Citrus Sinensis ID: 024876

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEEEcccccccccccccccccccccEEEEEcccEEEEEEEcccccccccccEEEEEEEEEEccccEEEcccccccccEEEEccccccccHHHHHHHHccccccEEEEEEcccccccccccccccccccccEEEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEccccccccccccccccEccccHHHcccccccccccccccccEEEcccccEEEEEEEcccccccccccEEEEEEEEEEccccEEEcccccccccEEEEEcccccccHHHHHHHHHHccccEEEEEEccHHcccccccccccccccccEEEEEEEEEEEEccccccccccccHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
meevdgepksqapgevgeseivtedaafvrgeppqdgdgppkvdsEVEVLHEKVTKQIIkeghgqkpskystCFLHYRAWAestrhkfddtwleqqplEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGwelgygkegsfsfpnvspmaDLVYEVVLIGfdetkegkarsdMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMalavknpcHLNMAACLLKLKRYEEAIGQCSLVSK
Flexible Loop (DISEMBL)
meevdgepksqapgevgeSEIVTEDAAFVrgeppqdgdgppkVDSEVEVLHEKVTKqiikeghgqkpskystCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDetkegkarsdmtveerigaadrrkmdgnALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK
Low Complexity Region (SEG)
MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK
Disordered region (IsUnstruct)
********************************************************************KYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD***************************************MQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS****
Disordered Region (DISOPRED)
*EEVDGE*************************************SEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGK**S**TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDF***********ALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK
Disordered Region (DISEMBL)
*****************ESEIVTEDAAFVRG**************EVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK
Disordered Region (DISPRO)
***********************************DGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
Q9LDC0	365	Peptidyl-prolyl cis-trans	yes	no	0.927	0.663	0.822	1e-120
P0C1J7	385	FK506-binding protein 5 O	N/A	no	0.724	0.490	0.331	2e-18
Q9FJL3	578	Peptidyl-prolyl cis-trans	no	no	0.758	0.342	0.347	4e-17
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.773	0.361	0.325	1e-16
Q38931	551	Peptidyl-prolyl cis-trans	no	no	0.858	0.406	0.315	1e-16
P30416	458	Peptidyl-prolyl cis-trans	yes	no	0.540	0.307	0.306	2e-11
Q9QVC8	458	Peptidyl-prolyl cis-trans	yes	no	0.628	0.358	0.290	3e-11
Q9TRY0	459	Peptidyl-prolyl cis-trans	yes	no	0.628	0.357	0.284	5e-11
Q54Y27	366	FK506-binding protein 6 O	yes	no	0.735	0.524	0.241	6e-11
Q02790	459	Peptidyl-prolyl cis-trans	yes	no	0.628	0.357	0.284	6e-11

>sp|Q9LDC0|FKB42_ARATH Peptidyl-prolyl cis-trans isomerase FKBP42 OS=Arabidopsis thaliana GN=FKBP42 PE=1 SV=1

 Score =  429 bits (1104), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 199/242 (82%), Positives = 225/242 (92%)

Query: 18  ESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHY 77
           ESEIVTE +A V  EP Q+G+ PPKVDSE EVL EKV+KQIIKEGHG KPSKYSTCFLHY
Sbjct: 15  ESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHY 74

Query: 78  RAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGK 137
           RAW ++++HKF+DTW EQQP+E+VLGKEKKE+ GLAIGV+SMK+GE AL+HVGWEL YGK
Sbjct: 75  RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134

Query: 138 EGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEK 197
           EG+FSFPNV PMADL+YEV +IGFDETKEGKARSDMTVEERIGAADRRKMDGN+LFKEEK
Sbjct: 135 EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEK 194

Query: 198 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257
           LEEAMQQYEMAIAYMGDDFMFQL+GKY+DMALAVKNPCHLN+AACL+KLKRY+EAIG C+
Sbjct: 195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254

Query: 258 LV 259
           +V
Sbjct: 255 IV 256

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Modulates the uptake of MRP substrates into the vacuole; reduces metolachlor-GS (MOC-GS) and enhances 17-beta-estradiol 17-(beta-D-glucuronide) (E(2)17betaG) uptake. Regulates cell elongation and orientation. Functions as a positive regulator of PGP1-mediated auxin transport. Confers drug modulation of PGP1 efflux activity as interaction with NPA or flavonol quercetin prevents its physical and functional interaction with PGP1. Required for the proper localization of auxin-related ABCB transporters. Plays a role in brassinosteroid (BR) signaling pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|P0C1J7|FKBP5_RHIO9 FK506-binding protein 5 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=FKBP5 PE=3 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 104/205 (50%), Gaps = 16/205 (7%)

Query: 54  VTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLA 113
           VTK+IIK G GQ+P   +   +HY A+   T  KFD +          L ++ K +    
Sbjct: 10  VTKRIIKAGLGQRPEPTNFVSVHYDAYLLDTSEKFDSSRDRNTEFTFQL-RDSKVIEAWE 68

Query: 114 IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDM 173
           + + +M+ GE A +    + GYG +G      V P A L +EV LIGF E  +       
Sbjct: 69  LAIPTMQVGELAEIICTSDYGYGDQGRQYI--VPPRAQLRFEVELIGFWEKPK------- 119

Query: 174 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD--DFMFQLFGKYRDMALAV 231
           +  ERI  A+++K +GNALFK + +E A+  Y     Y+ D  D   +   + R + +++
Sbjct: 120 SASERIRLAEKKKNEGNALFKLDAIESALFAYRKGREYIQDLWDCEPEELEEARQLIVSI 179

Query: 232 KNPCHLNMAACLLKLKRYEEAIGQC 256
           +    LN+ AC LKLK Y+ AI  C
Sbjct: 180 Q----LNIGACHLKLKHYDHAIEVC 200

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (taxid: 246409)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 111/213 (52%), Gaps = 15/213 (7%)

Query: 47  VEVLHE-KVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQ--QPLEMVL 102
           VEV  + KV K+I+KEG G ++P++ +   L      +     F     E+  +P E  +
Sbjct: 274 VEVTDDRKVIKKILKEGEGYERPNEGAIVKLKLIGKLQDGTTVFVKKGHEEDEEPFEFKI 333

Query: 103 GKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGK-EGSFSFPNVSPMADLVYEVVLIGF 161
            +E+  + GL   V  MK GE AL+ +  E  +G  E       + P + + YEV L+ F
Sbjct: 334 DEEQV-IEGLEKAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVELVSF 392

Query: 162 DETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--Q 219
            + KE     DM  +ERI AA ++K +GN LFK  K   A ++YE  + Y+  D  F  +
Sbjct: 393 IKEKES---WDMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEE 449

Query: 220 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEA 252
              K +D+ +A    C+LN AAC LKLK Y+EA
Sbjct: 450 EKKKSKDLKIA----CNLNDAACKLKLKDYKEA 478

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 105/209 (50%), Gaps = 7/209 (3%)

Query: 52  EKVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
           +K+ K+++KE  G ++P++ +   +      +           EQ+P E    +E   + 
Sbjct: 274 KKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAV-IE 332

Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 170
           GL   V +MK GE AL+ +  E  YG   S     V P + ++YEV L+ F + KE    
Sbjct: 333 GLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKDKES--- 389

Query: 171 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 230
            D+   E+I AA  +K +GNALFK  K   A ++YE A  ++  D  F    K +   L 
Sbjct: 390 WDLNNSEKIEAAGTKKEEGNALFKSGKYARASKRYEKAAKFIEYDTSFSEDEKKQSKQLK 449

Query: 231 VKNPCHLNMAACLLKLKRYEEAIGQCSLV 259
           +   C+LN AAC LKLK Y++A   C+ V
Sbjct: 450 IT--CNLNNAACKLKLKDYKQAEKLCTKV 476

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 123/247 (49%), Gaps = 23/247 (9%)

Query: 30  RGEPPQDGDG--PPKVDSEV-----------EVLHE-KVTKQIIKEGHG-QKPSKYSTCF 74
           +G+P   G+G  PP    E+           EV  + KV K+++KEG G ++P++ +   
Sbjct: 235 KGKPASAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEGAVVK 294

Query: 75  LHYRA-WAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWEL 133
           +       + T          ++P E    +E+  + GL   V  MK GE AL+ +  E 
Sbjct: 295 VKLIGKLQDGTVFLKKGHGENEEPFEFKTDEEQV-VDGLDRAVMKMKKGEVALVTIDPEY 353

Query: 134 GYG-KEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNAL 192
            +G  E       V P + + YEV L+ FD+ +E     DM  EE+I AA ++K +GN+ 
Sbjct: 354 AFGSNESQQELAVVPPNSTVTYEVDLLTFDKERES---WDMNTEEKIEAASKKKEEGNSK 410

Query: 193 FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEA 252
           FK  K   A ++YE A+ ++  D  F    + +  A A+K  C+LN AAC LKLK Y++A
Sbjct: 411 FKGGKYSLASKRYEKAVKFIEYDTSFS--EEEKKQAKALKVACNLNDAACKLKLKDYKQA 468

Query: 253 IGQCSLV 259
              C+ V
Sbjct: 469 EKLCTKV 475

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30416|FKBP4_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 79/147 (53%), Gaps = 6/147 (4%)

Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 170
           GL   +  M+ GEH+++++     +G  G   F  + P A+L YEV L  F++ KE    
Sbjct: 203 GLEEAIQRMEKGEHSIVYLKPSYAFGSVGKERF-QIPPHAELRYEVRLKSFEKAKES--- 258

Query: 171 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 230
            +M+  E++  ++  K  G A FKE K ++A+ QY+  ++++  +  F   G+      A
Sbjct: 259 WEMSSAEKLEQSNIVKERGTAYFKEGKYKQALLQYKKIVSWLEYESSFS--GEEMQKVHA 316

Query: 231 VKNPCHLNMAACLLKLKRYEEAIGQCS 257
           ++   HLN+A C LKL+ +  AI  C+
Sbjct: 317 LRLASHLNLAMCHLKLQAFSAAIESCN 343

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9QVC8|FKBP4_RAT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Rattus norvegicus GN=Fkbp4 PE=1 SV=3

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 91/172 (52%), Gaps = 8/172 (4%)

Query: 88  FDDTWLEQQPLEMVLGK-EKKEM-TGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN 145
           ++D   +Q+ L   +G+ E  ++  GL   +  M+ GEH+++++     +G  G   F  
Sbjct: 178 YNDRLFDQRELCFEVGEGESLDLPCGLEEAIQRMEKGEHSIVYLKPSYAFGSVGKERF-Q 236

Query: 146 VSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQY 205
           + P A+L YEV L  F++    KA  +M  EE++  ++  K  G   FKE K ++A+ QY
Sbjct: 237 IPPHAELRYEVHLKSFEK---AKASWEMNSEEKLEQSNIVKERGTVYFKEGKYKQALLQY 293

Query: 206 EMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257
           +  ++++  +  F   G+      A++   HLN+A C LKL+ +  AI  C+
Sbjct: 294 KKIVSWLEYESSFS--GEEMQKVHALRLASHLNLAMCHLKLQAFSAAIESCN 343

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). Plays a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly. The PPIase activity controls neuronal growth cones via regulation of TRPC1 channel opening.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TRY0|FKBP4_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Bos taurus GN=FKBP4 PE=1 SV=4

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 91/172 (52%), Gaps = 8/172 (4%)

Query: 88  FDDTWLEQQPLEMVLGK-EKKEM-TGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN 145
           F D   +++ L   +G+ E  ++  GL   +  M+ GEH+++++     +G  G   F  
Sbjct: 178 FKDQVFDRRELRFEVGEGESMDLPCGLEKAIQRMEKGEHSIVYLKPRYAFGSAGKEKF-Q 236

Query: 146 VSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQY 205
           + P A+L YE+ L  F++ KE     +M+ EE++  +   K  G   FKE K ++A+ QY
Sbjct: 237 IPPNAELKYEIHLKSFEKAKES---WEMSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQY 293

Query: 206 EMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257
           +  ++++  +  F    +  + A A++   HLN+A C LKL+ +  AI  C+
Sbjct: 294 KKIVSWLEYESSFS--DEDAEKAQALRLASHLNLAMCHLKLQAFSAAIENCN 343

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q54Y27|FKBP6_DICDI FK506-binding protein 6 OS=Dictyostelium discoideum GN=fkbp6 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 15/207 (7%)

Query: 54  VTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLA 113
           + K+IIKEG+G+ P   S   +HY  +  S +  FD +     P    +G  K  +  + 
Sbjct: 107 LIKRIIKEGYGEIPPPRSIVTVHYEGYL-SNQVLFDSSVQRNSPFTFQMG-TKSVIDAIE 164

Query: 114 IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDM 173
           + +S+MK G+ A +       +GK G   F  + P   ++Y++ L+ +    + K+    
Sbjct: 165 LSISTMKVGQEAEIVTTQRYAFGKLGLPPF--IPPNVSVIYKIKLLSY----KLKSNDFT 218

Query: 174 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDD----FMFQLFGKYRDMAL 229
             E  I  +   K  GN  F++   +++++ Y  +I  + D      + ++  K     L
Sbjct: 219 NFESLINKSKEEKEIGNQFFQKSNYKKSIRHYVKSIWILNDPEQTLGLNEMENKLLKDTL 278

Query: 230 AVKNPCHLNMAACLLKLKRYEEAIGQC 256
            +    +LN+A+C +KLK  +  I  C
Sbjct: 279 II---LYLNLASCNIKLKDGKRGISNC 302

PPIases accelerate the folding of proteins by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Dictyostelium discoideum (taxid: 44689)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q02790|FKBP4_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3

 Score = 68.2 bits (165), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 89/172 (51%), Gaps = 8/172 (4%)

Query: 88  FDDTWLEQQPLEMVLGK-EKKEMT-GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN 145
           + D   +Q+ L   +G+ E  ++  GL   +  M+ GEH+++++     +G  G   F  
Sbjct: 178 YKDKLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKF-Q 236

Query: 146 VSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQY 205
           + P A+L YE+ L  F++ KE     +M  EE++  +   K  G   FKE K ++A+ QY
Sbjct: 237 IPPNAELKYELHLKSFEKAKES---WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQY 293

Query: 206 EMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257
           +  ++++  +  F    +    A A++   HLN+A C LKL+ +  AI  C+
Sbjct: 294 KKIVSWLEYESSFS--NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN 343

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening. Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
225450073	365	PREDICTED: 42 kDa peptidyl-prolyl isomer	0.988	0.706	0.861	1e-129
356531669	370	PREDICTED: 42 kDa peptidyl-prolyl isomer	0.992	0.7	0.819	1e-124
255645857	370	unknown [Glycine max]	0.992	0.7	0.819	1e-124
449464000	369	PREDICTED: peptidyl-prolyl cis-trans iso	0.980	0.693	0.829	1e-123
356542700	370	PREDICTED: 42 kDa peptidyl-prolyl isomer	0.992	0.7	0.819	1e-123
449516701	369	PREDICTED: peptidyl-prolyl cis-trans iso	0.980	0.693	0.825	1e-123
224104085	369	predicted protein [Populus trichocarpa]	0.969	0.685	0.818	1e-121
224059618	372	predicted protein [Populus trichocarpa]	0.988	0.693	0.803	1e-120
357470967	389	42 kDa peptidyl-prolyl isomerase [Medica	0.992	0.665	0.793	1e-118
357470971	372	42 kDa peptidyl-prolyl isomerase [Medica	0.992	0.696	0.793	1e-118

>gi|225450073|ref|XP_002277668.1| PREDICTED: 42 kDa peptidyl-prolyl isomerase isoform 2 [Vitis vinifera] gi|225450075|ref|XP_002277645.1| PREDICTED: 42 kDa peptidyl-prolyl isomerase isoform 1 [Vitis vinifera] gi|297736282|emb|CBI24920.3| unnamed protein product [Vitis vinifera]

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/259 (86%), Positives = 242/259 (93%), Gaps = 1/259 (0%)

Query: 1   MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIK 60
           ME+V+ E +SQ P +  E+EIVTE+AAFV GEP QDG GPPKVDSEVEVLHEKVTKQI+K
Sbjct: 1   MEDVE-ELQSQKPDQDDENEIVTENAAFVHGEPLQDGTGPPKVDSEVEVLHEKVTKQIMK 59

Query: 61  EGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMK 120
           EGHGQKPSKYSTCFLHYRAW EST+HKF+DTW EQ+P+E+V+GKEKKEMTGLAIGVS+MK
Sbjct: 60  EGHGQKPSKYSTCFLHYRAWTESTQHKFEDTWNEQRPVEIVIGKEKKEMTGLAIGVSNMK 119

Query: 121 AGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIG 180
           +GE ALLHVGWELGYGKEGSFSFPNV PMAD++YEV LIGFDETKEGKAR DMTVEERIG
Sbjct: 120 SGERALLHVGWELGYGKEGSFSFPNVPPMADILYEVELIGFDETKEGKARGDMTVEERIG 179

Query: 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 240
           AADRRKMDGN  FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA
Sbjct: 180 AADRRKMDGNVYFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 239

Query: 241 ACLLKLKRYEEAIGQCSLV 259
           ACL+KLKRYEEAIGQCS+V
Sbjct: 240 ACLIKLKRYEEAIGQCSIV 258

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531669|ref|XP_003534399.1| PREDICTED: 42 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/260 (81%), Positives = 235/260 (90%), Gaps = 1/260 (0%)

Query: 1   MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEP-PQDGDGPPKVDSEVEVLHEKVTKQII 59
           MEE+ G     + G+  E+E++TE +AFV+GEP P+    PPKVDSEVEVLHEKVTKQII
Sbjct: 1   MEELQGSQTQSSLGQEDENEVITESSAFVKGEPAPEFSSNPPKVDSEVEVLHEKVTKQII 60

Query: 60  KEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSM 119
           KEGHGQKPSKYSTCF HYRAWAE + HKF+DTWLEQ+P+EMVLGKEKKEMTGL++GV+SM
Sbjct: 61  KEGHGQKPSKYSTCFFHYRAWAEKSEHKFEDTWLEQRPIEMVLGKEKKEMTGLSVGVASM 120

Query: 120 KAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERI 179
           KAGE AL+ VGWELGYG+EGSFSFPNV P ADLVYEV LIGFDETKEGKARSDMTVEERI
Sbjct: 121 KAGERALVRVGWELGYGEEGSFSFPNVPPKADLVYEVELIGFDETKEGKARSDMTVEERI 180

Query: 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM 239
           GAADRRKMDGNAL++EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM
Sbjct: 181 GAADRRKMDGNALYQEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM 240

Query: 240 AACLLKLKRYEEAIGQCSLV 259
           AACL+KL RYEEAIGQC+ V
Sbjct: 241 AACLIKLNRYEEAIGQCNTV 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645857|gb|ACU23419.1| unknown [Glycine max]

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/260 (81%), Positives = 235/260 (90%), Gaps = 1/260 (0%)

Query: 1   MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEP-PQDGDGPPKVDSEVEVLHEKVTKQII 59
           MEE+ G     + G+  E+E++TE +AFV+GEP P+    PPKVDSEVEVLHEKVTKQII
Sbjct: 1   MEELQGSQTQSSLGQEDENEVITESSAFVKGEPAPEFSSNPPKVDSEVEVLHEKVTKQII 60

Query: 60  KEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSM 119
           KEGHGQKPSKYSTCF HYRAWAE + HKF+DTWLEQ+P+EMVLGKEKKEMTGL++GV+SM
Sbjct: 61  KEGHGQKPSKYSTCFFHYRAWAEKSEHKFEDTWLEQRPIEMVLGKEKKEMTGLSVGVASM 120

Query: 120 KAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERI 179
           KAGE AL+ VGWELGYG+EGSFSFPNV P ADLVYEV LIGFDETKEGKARSDMTVEERI
Sbjct: 121 KAGERALVRVGWELGYGEEGSFSFPNVPPKADLVYEVELIGFDETKEGKARSDMTVEERI 180

Query: 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM 239
           GAADRRKMDGNAL++EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM
Sbjct: 181 GAADRRKMDGNALYQEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM 240

Query: 240 AACLLKLKRYEEAIGQCSLV 259
           AACL+KL RYEEAIGQC+ V
Sbjct: 241 AACLIKLNRYEEAIGQCNTV 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464000|ref|XP_004149717.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42-like [Cucumis sativus]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/258 (82%), Positives = 234/258 (90%), Gaps = 2/258 (0%)

Query: 4   VDGEPKSQA--PGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKE 61
           +DGE + Q   PG+  E+EIV E A+ V GEPP D +GPPKVDSEVEVL EKVTKQI+KE
Sbjct: 1   MDGEQEQQTHNPGQDDENEIVAEGASVVHGEPPSDDNGPPKVDSEVEVLQEKVTKQIMKE 60

Query: 62  GHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKA 121
           GHGQ PSKYSTCFLHYRAW ESTRHKF+DTW E +PLE+VLGKEKKEMTGL+IGV+SMK+
Sbjct: 61  GHGQIPSKYSTCFLHYRAWTESTRHKFEDTWNELRPLELVLGKEKKEMTGLSIGVASMKS 120

Query: 122 GEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGA 181
           GE ALLHVGWEL YGKEG+FSFPNV PM+D++YEV LIGFDETKEGKARSDMTVEERIGA
Sbjct: 121 GERALLHVGWELAYGKEGNFSFPNVPPMSDVLYEVELIGFDETKEGKARSDMTVEERIGA 180

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
           ADRRKMDGN LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM+A
Sbjct: 181 ADRRKMDGNVLFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMSA 240

Query: 242 CLLKLKRYEEAIGQCSLV 259
           CL+KLKRYEEAI QCS+V
Sbjct: 241 CLIKLKRYEEAIAQCSMV 258

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542700|ref|XP_003539804.1| PREDICTED: 42 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/260 (81%), Positives = 234/260 (90%), Gaps = 1/260 (0%)

Query: 1   MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEP-PQDGDGPPKVDSEVEVLHEKVTKQII 59
           MEEV       + G+  E+E++TE +AFV+GEP P+    PPKVDSEVEVLHEKV+KQII
Sbjct: 1   MEEVQESQTQSSLGQEEENEVITESSAFVKGEPAPEFSSNPPKVDSEVEVLHEKVSKQII 60

Query: 60  KEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSM 119
           KEGHGQKPSKYSTCF HYRAWAE ++HKF+DTW EQ+P+EMVLGKEKKEMTGL IGV+SM
Sbjct: 61  KEGHGQKPSKYSTCFFHYRAWAEKSQHKFEDTWQEQRPIEMVLGKEKKEMTGLGIGVASM 120

Query: 120 KAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERI 179
           KAGE AL+ VGWELGYG+EGSFSFPNV P ADLVYEV LIGFDETKEGKARSDMTVEERI
Sbjct: 121 KAGERALVRVGWELGYGEEGSFSFPNVPPKADLVYEVELIGFDETKEGKARSDMTVEERI 180

Query: 180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM 239
           GAADRRKMDGNAL++EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM
Sbjct: 181 GAADRRKMDGNALYQEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM 240

Query: 240 AACLLKLKRYEEAIGQCSLV 259
           AACL+KL RYEEAIGQCS+V
Sbjct: 241 AACLIKLNRYEEAIGQCSIV 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516701|ref|XP_004165385.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42-like [Cucumis sativus]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/258 (82%), Positives = 233/258 (90%), Gaps = 2/258 (0%)

Query: 4   VDGEPKSQA--PGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKE 61
           +DGE + Q   PG+  E+EIV E A+ V GEPP D +GPPKVDSEVEVL EKVTKQI+KE
Sbjct: 1   MDGEQEQQTHNPGQDDENEIVAEGASVVHGEPPSDDNGPPKVDSEVEVLQEKVTKQIMKE 60

Query: 62  GHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKA 121
           GHGQ PSKYSTCFLHYRAW ESTRHKF+DTW E +PLE+VLGK KKEMTGL+IGV+SMK+
Sbjct: 61  GHGQIPSKYSTCFLHYRAWTESTRHKFEDTWNELRPLELVLGKRKKEMTGLSIGVASMKS 120

Query: 122 GEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGA 181
           GE ALLHVGWEL YGKEG+FSFPNV PM+D++YEV LIGFDETKEGKARSDMTVEERIGA
Sbjct: 121 GERALLHVGWELAYGKEGNFSFPNVPPMSDVLYEVELIGFDETKEGKARSDMTVEERIGA 180

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
           ADRRKMDGN LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM+A
Sbjct: 181 ADRRKMDGNVLFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMSA 240

Query: 242 CLLKLKRYEEAIGQCSLV 259
           CL+KLKRYEEAI QCS+V
Sbjct: 241 CLIKLKRYEEAIAQCSMV 258

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104085|ref|XP_002313312.1| predicted protein [Populus trichocarpa] gi|118485759|gb|ABK94729.1| unknown [Populus trichocarpa] gi|222849720|gb|EEE87267.1| predicted protein [Populus trichocarpa]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/253 (81%), Positives = 228/253 (90%)

Query: 7   EPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQK 66
           E  SQ+ G+  E+E   E+AA VRGEP QDG+ PPKV+S VE+L EKVTKQIIKEGHGQK
Sbjct: 3   EIPSQSIGKDDENERAMEEAAVVRGEPLQDGNHPPKVESAVEILQEKVTKQIIKEGHGQK 62

Query: 67  PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHAL 126
           P+KY+TCFLHYRAW EST+HKFDDTW EQ+P EMVLGKEK EM GLA+GVSSMKAGE AL
Sbjct: 63  PTKYATCFLHYRAWTESTQHKFDDTWHEQRPFEMVLGKEKNEMAGLAVGVSSMKAGERAL 122

Query: 127 LHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRK 186
           LHVGWELGYGKEG+FSFPNV PMAD++YEV LIGFDE KEGKAR DMT EERIGAADRRK
Sbjct: 123 LHVGWELGYGKEGNFSFPNVPPMADIIYEVELIGFDEVKEGKARGDMTAEERIGAADRRK 182

Query: 187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL 246
           MDGN+LFKEEKLEEAMQQYEMAIAY+GDDFMFQLFGKYRDMALAVKNPCHLNMAACL+KL
Sbjct: 183 MDGNSLFKEEKLEEAMQQYEMAIAYLGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKL 242

Query: 247 KRYEEAIGQCSLV 259
           +RYEEAI QC++V
Sbjct: 243 ERYEEAIAQCTIV 255

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059618|ref|XP_002299936.1| predicted protein [Populus trichocarpa] gi|222847194|gb|EEE84741.1| predicted protein [Populus trichocarpa]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/259 (80%), Positives = 230/259 (88%), Gaps = 1/259 (0%)

Query: 1   MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIK 60
           MEE+  E +SQ  G+  E EIV E AA V G+P Q GD PPKVDS VE+L EKVTKQ++K
Sbjct: 1   MEEIQ-EHESQTIGKDDEDEIVVEQAAGVHGDPVQHGDFPPKVDSAVEILQEKVTKQVVK 59

Query: 61  EGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMK 120
           EGHGQKP KY+TCFLHYRAW EST+HKF+DTW EQ+P EMVLGKEKKEM GLA+GVSSMK
Sbjct: 60  EGHGQKPCKYATCFLHYRAWTESTQHKFEDTWHEQRPFEMVLGKEKKEMAGLAVGVSSMK 119

Query: 121 AGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIG 180
           AGE ALLHVGWELGYGKEGSFSFPNV PMAD++YEV LIGFDE +EGKAR DMT EERIG
Sbjct: 120 AGERALLHVGWELGYGKEGSFSFPNVPPMADIIYEVELIGFDEVREGKARGDMTAEERIG 179

Query: 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 240
           AADRRKMDGN+LFK+EKLEEAMQQYEMAIAY+GDDFMFQLFGKYRDMALAVKNPCHLNMA
Sbjct: 180 AADRRKMDGNSLFKDEKLEEAMQQYEMAIAYLGDDFMFQLFGKYRDMALAVKNPCHLNMA 239

Query: 241 ACLLKLKRYEEAIGQCSLV 259
           ACL+KLKR+EEAI QC++V
Sbjct: 240 ACLIKLKRHEEAIAQCTIV 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470967|ref|XP_003605768.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula] gi|355506823|gb|AES87965.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/261 (79%), Positives = 230/261 (88%), Gaps = 2/261 (0%)

Query: 1   MEEV-DGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDG-DGPPKVDSEVEVLHEKVTKQI 58
           MEEV + +P+S+   E    E++ E++ + +GE P++    PPKVDSEVEVLHEKVTKQI
Sbjct: 18  MEEVQESQPQSKPGQENNVDEVIDENSEYEKGETPEELLSSPPKVDSEVEVLHEKVTKQI 77

Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           IKEGHGQKPSKYSTCF HYRAW+E+T HKF+DTW EQ+P EMV+GKEKKEMTGL IGV+S
Sbjct: 78  IKEGHGQKPSKYSTCFFHYRAWSENTEHKFEDTWQEQRPTEMVIGKEKKEMTGLGIGVAS 137

Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEER 178
           MKAGE ALL V WELGYG+EGSFSFPNV PMADLVYEV LIGFDETK+GKARSDMTVEER
Sbjct: 138 MKAGERALLRVSWELGYGQEGSFSFPNVPPMADLVYEVELIGFDETKDGKARSDMTVEER 197

Query: 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLN 238
           IGAADRRKMDGN LF+E KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLN
Sbjct: 198 IGAADRRKMDGNVLFQENKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLN 257

Query: 239 MAACLLKLKRYEEAIGQCSLV 259
            AACL+KL RYEEAIGQCS+V
Sbjct: 258 TAACLIKLNRYEEAIGQCSIV 278

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470971|ref|XP_003605770.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula] gi|355506825|gb|AES87967.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula] gi|388520749|gb|AFK48436.1| unknown [Medicago truncatula]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/261 (79%), Positives = 230/261 (88%), Gaps = 2/261 (0%)

Query: 1   MEEV-DGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDG-DGPPKVDSEVEVLHEKVTKQI 58
           MEEV + +P+S+   E    E++ E++ + +GE P++    PPKVDSEVEVLHEKVTKQI
Sbjct: 1   MEEVQESQPQSKPGQENNVDEVIDENSEYEKGETPEELLSSPPKVDSEVEVLHEKVTKQI 60

Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           IKEGHGQKPSKYSTCF HYRAW+E+T HKF+DTW EQ+P EMV+GKEKKEMTGL IGV+S
Sbjct: 61  IKEGHGQKPSKYSTCFFHYRAWSENTEHKFEDTWQEQRPTEMVIGKEKKEMTGLGIGVAS 120

Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEER 178
           MKAGE ALL V WELGYG+EGSFSFPNV PMADLVYEV LIGFDETK+GKARSDMTVEER
Sbjct: 121 MKAGERALLRVSWELGYGQEGSFSFPNVPPMADLVYEVELIGFDETKDGKARSDMTVEER 180

Query: 179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLN 238
           IGAADRRKMDGN LF+E KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLN
Sbjct: 181 IGAADRRKMDGNVLFQENKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLN 240

Query: 239 MAACLLKLKRYEEAIGQCSLV 259
            AACL+KL RYEEAIGQCS+V
Sbjct: 241 TAACLIKLNRYEEAIGQCSIV 261

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2089890	365	TWD1 "AT3G21640" [Arabidopsis	0.927	0.663	0.822	2.6e-109
UNIPROTKB|Q2QXS0	370	LOC_Os12g05090 "Os12g0145500 p	0.965	0.681	0.734	6e-103
UNIPROTKB|Q0IUM3	92	Os11g0148300 "Os11g0148300 pro	0.203	0.576	0.905	1.3e-22
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.766	0.346	0.345	5.9e-20
TAIR|locus:2090265	562	ROF1 "AT3G25230" [Arabidopsis	0.858	0.398	0.315	1.9e-19
UNIPROTKB|Q6K5Q1	682	P0579G08.8 "Putative peptidylp	0.777	0.297	0.328	1.3e-18
UNIPROTKB|Q7RM28	306	PY02360 "FK506-binding protein	0.758	0.647	0.327	3.6e-18
GENEDB_PFALCIPARUM|PFL2275c	304	PfFKBP35 "FK506-binding protei	0.758	0.651	0.325	7.5e-18
UNIPROTKB|Q8I4V8	304	FKBP35 "FK506-binding protein	0.758	0.651	0.325	7.5e-18
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.773	0.348	0.309	8.8e-18

TAIR|locus:2089890 TWD1 "AT3G21640" [Arabidopsis thaliana (taxid:3702)]

 Score = 1080 (385.2 bits), Expect = 2.6e-109, P = 2.6e-109
 Identities = 199/242 (82%), Positives = 225/242 (92%)

Query:    18 ESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHY 77
             ESEIVTE +A V  EP Q+G+ PPKVDSE EVL EKV+KQIIKEGHG KPSKYSTCFLHY
Sbjct:    15 ESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHY 74

Query:    78 RAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGK 137
             RAW ++++HKF+DTW EQQP+E+VLGKEKKE+ GLAIGV+SMK+GE AL+HVGWEL YGK
Sbjct:    75 RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134

Query:   138 EGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEK 197
             EG+FSFPNV PMADL+YEV +IGFDETKEGKARSDMTVEERIGAADRRKMDGN+LFKEEK
Sbjct:   135 EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEK 194

Query:   198 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257
             LEEAMQQYEMAIAYMGDDFMFQL+GKY+DMALAVKNPCHLN+AACL+KLKRY+EAIG C+
Sbjct:   195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254

Query:   258 LV 259
             +V
Sbjct:   255 IV 256

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IDA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=IEA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0048366 "leaf development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB|Q2QXS0 LOC_Os12g05090 "Os12g0145500 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
 Identities = 185/252 (73%), Positives = 217/252 (86%)

Query:     8 PKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKP 67
             P + +     + EI  E+ +FV  EPPQDG  PP V S++EVL++KV KQ+IKEGHG+KP
Sbjct:    12 PAADSTSGASDDEITVEETSFVHTEPPQDGTAPPVVTSDMEVLNDKVKKQVIKEGHGKKP 71

Query:    68 SKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALL 127
             S+++TCF+HYRAW + + HKF+DTW EQ  +E+VLGKEKKEMTGL IGVS+M++GE ALL
Sbjct:    72 SRFATCFVHYRAWVQGSSHKFEDTWQEQHSIELVLGKEKKEMTGLGIGVSNMRSGERALL 131

Query:   128 HVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKM 187
             HV WELGYGKEGSFSFPNV PMADLVYEV LIGFD+ KEGKARSDMTVEERI AADRRK+
Sbjct:   132 HVNWELGYGKEGSFSFPNVPPMADLVYEVELIGFDDVKEGKARSDMTVEERIEAADRRKI 191

Query:   188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK 247
             +GN  FKE+K EEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACL+KLK
Sbjct:   192 EGNEYFKEKKFEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLK 251

Query:   248 RYEEAIGQCSLV 259
             R++EAI QC++V
Sbjct:   252 RFDEAIAQCTIV 263

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q0IUM3 Os11g0148300 "Os11g0148300 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 48/53 (90%), Positives = 52/53 (98%)

Query:   208 AIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS 260
             AIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACL+KLKR++EAI QCS+VS
Sbjct:     9 AIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLKRFDEAIAQCSIVS 61

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 5.9e-20, P = 5.9e-20
 Identities = 73/211 (34%), Positives = 108/211 (51%)

Query:    47 VEVLHE-KVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQ--QPLEMVL 102
             VEV  + KV K+I+KEG G ++P++ +   L      +     F     E+  +P E  +
Sbjct:   274 VEVTDDRKVIKKILKEGEGYERPNEGAIVKLKLIGKLQDGTTVFVKKGHEEDEEPFEFKI 333

Query:   103 GKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGK-EGSFSFPNVSPMADLVYEVVLIGF 161
              +E+  + GL   V  MK GE AL+ +  E  +G  E       + P + + YEV L+ F
Sbjct:   334 DEEQV-IEGLEKAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVELVSF 392

Query:   162 DETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLF 221
              + KE     DM  +ERI AA ++K +GN LFK  K   A ++YE  + Y+  D  F   
Sbjct:   393 IKEKESW---DMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEE 449

Query:   222 GKYRDMALAVKNPCHLNMAACLLKLKRYEEA 252
              K +   L +   C+LN AAC LKLK Y+EA
Sbjct:   450 EKKKSKDLKIA--CNLNDAACKLKLKDYKEA 478

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 78/247 (31%), Positives = 123/247 (49%)

Query:    30 RGEPPQDGDG--PPKVDSEV-----------EVLHE-KVTKQIIKEGHG-QKPSKYSTCF 74
             +G+P   G+G  PP    E+           EV  + KV K+++KEG G ++P++ +   
Sbjct:   235 KGKPASAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEGAVVK 294

Query:    75 LHYRA-WAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWEL 133
             +       + T          ++P E    +E+  + GL   V  MK GE AL+ +  E 
Sbjct:   295 VKLIGKLQDGTVFLKKGHGENEEPFEFKTDEEQV-VDGLDRAVMKMKKGEVALVTIDPEY 353

Query:   134 GYGK-EGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNAL 192
              +G  E       V P + + YEV L+ FD+ +E     DM  EE+I AA ++K +GN+ 
Sbjct:   354 AFGSNESQQELAVVPPNSTVTYEVDLLTFDKERESW---DMNTEEKIEAASKKKEEGNSK 410

Query:   193 FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEA 252
             FK  K   A ++YE A+ ++  D  F    + +  A A+K  C+LN AAC LKLK Y++A
Sbjct:   411 FKGGKYSLASKRYEKAVKFIEYDTSFS--EEEKKQAKALKVACNLNDAACKLKLKDYKQA 468

Query:   253 IGQCSLV 259
                C+ V
Sbjct:   469 EKLCTKV 475

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

UNIPROTKB|Q6K5Q1 P0579G08.8 "Putative peptidylprolyl isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 216 (81.1 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 69/210 (32%), Positives = 104/210 (49%)

Query:    52 EKVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
             +K+ K+I+ EG G ++PS  +   +      E             +P E     E + + 
Sbjct:   327 KKILKKILHEGEGYERPSDCTLVRVKLIGKLEDGTIFVTRGHDGDEPFEFKTD-EDQVVE 385

Query:   111 GLAIGVSSMKAGEHALLHVGWELGYGK-EGSFSFPNVSPMADLVYEVVLIGFDETKEGKA 169
             GL   V SMK GE AL+ +  E  +G  E       V P + + YEV L+ FD+ KE   
Sbjct:   386 GLDKAVLSMKKGEVALVTIPPEYAFGSDETRQDLSVVPPNSTVYYEVELVSFDKEKESWD 445

Query:   170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMAL 229
               + T  E+I AA ++K +GNA FK EK   A ++Y  A+ ++  D  F    + + ++ 
Sbjct:   446 MKENT--EKIEAAAKKKDEGNAWFKMEKYARASKRYGKALNFIQYDSSFS--EEEKQLSK 501

Query:   230 AVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259
              +K  C LN AAC LKLK Y+EA   C+ V
Sbjct:   502 PLKVSCKLNNAACKLKLKDYKEAKELCTEV 531

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q7RM28 PY02360 "FK506-binding protein" [Plasmodium yoelii yoelii (taxid:73239)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 70/214 (32%), Positives = 109/214 (50%)

Query:    54 VTKQIIKEG-HGQK--PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
             V K I+++G  G++  P K +   +HY    ES    FD +     P +  LG  +  + 
Sbjct:    21 VIKTILRKGDEGEENVPKKGNEVTVHYVGKLESDGSIFDSSRQRDVPFKFHLGNGEV-IK 79

Query:   111 GLAIGVSSMKAGEHALLHVGWELGYGKEG-SFSFPNVSPMADLVYEVVLIGFDETKEGKA 169
             G  I V+SMK  E   + +  + GYGKEG   + P  S    L++E+ L+ F E K  K 
Sbjct:    80 GWDICVASMKKNEKCSVRLDSKYGYGKEGCGETIPGNSV---LIFEIELLSFKEAK--KN 134

Query:   170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM--GDDFMFQLFGKYRDM 227
               D T EE+I AA   K +GN  FK+ ++ EA+ +Y+ A+ Y    D++  +L  K +++
Sbjct:   135 IYDYTDEEKIQAAFELKDEGNEFFKKNEINEAIAKYKEALDYFMHTDEWEDELLEKKQNI 194

Query:   228 ALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261
              +     C+LN++ C  K K Y  AI   S V K
Sbjct:   195 QII----CNLNLSTCYNKNKDYPNAIEHASKVLK 224

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

GENEDB_PFALCIPARUM|PFL2275c PfFKBP35 "FK506-binding protein (FKBP)-type peptidyl-propyl isomerase" [Plasmodium falciparum (taxid:5833)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 70/215 (32%), Positives = 114/215 (53%)

Query:    54 VTKQIIKEG-HGQK--PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
             V K I+K+G  G++  P K +   +HY    EST   FD ++    P +  L ++ + + 
Sbjct:    18 VIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHL-EQGEVIK 76

Query:   111 GLAIGVSSMKAGEHALLHVGWELGYGKEG-SFSFPNVSPMADLVYEVVLIGFDETKEGKA 169
             G  I VSSM+  E  L+ +    GYG EG   S P  S    L++E+ L+ F E K  K+
Sbjct:    77 GWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSV---LLFEIELLSFREAK--KS 131

Query:   170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM--GDDFMFQ-LFGKYRD 226
               D T EE++ +A   K +GN  FK+ ++ EA+ +Y+ A+ +    +++  Q L  K ++
Sbjct:   132 IYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 191

Query:   227 MALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261
             + ++    C+LN+A C  K K Y +AI   S V K
Sbjct:   192 IEIS----CNLNLATCYNKNKDYPKAIDHASKVLK 222

GO:0005528 "FK506 binding" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q8I4V8 FKBP35 "FK506-binding protein (FKBP)-type peptidyl-propyl isomerase" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 70/215 (32%), Positives = 114/215 (53%)

Query:    54 VTKQIIKEG-HGQK--PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
             V K I+K+G  G++  P K +   +HY    EST   FD ++    P +  L ++ + + 
Sbjct:    18 VIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHL-EQGEVIK 76

Query:   111 GLAIGVSSMKAGEHALLHVGWELGYGKEG-SFSFPNVSPMADLVYEVVLIGFDETKEGKA 169
             G  I VSSM+  E  L+ +    GYG EG   S P  S    L++E+ L+ F E K  K+
Sbjct:    77 GWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSV---LLFEIELLSFREAK--KS 131

Query:   170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM--GDDFMFQ-LFGKYRD 226
               D T EE++ +A   K +GN  FK+ ++ EA+ +Y+ A+ +    +++  Q L  K ++
Sbjct:   132 IYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 191

Query:   227 MALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261
             + ++    C+LN+A C  K K Y +AI   S V K
Sbjct:   192 IEIS----CNLNLATCYNKNKDYPKAIDHASKVLK 222

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 207 (77.9 bits), Expect = 8.8e-18, Sum P(2) = 8.8e-18
 Identities = 65/210 (30%), Positives = 104/210 (49%)

Query:    52 EKVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
             +K+ K+++ EG G ++P++ +   +      +           E +P E    +E+  + 
Sbjct:   278 KKILKKVLTEGTGYERPNEGAVVKVKITGKLQDGTIFTKKGHDEPEPFEFKTDEEEV-ID 336

Query:   111 GLAIGVSSMKAGEHALLHVGWELGYGK-EGSFSFPNVSPMADLVYEVVLIGFDETKEGKA 169
             G+   V +MK GE AL+ +  E  +G  E       V P + ++YEV L+ F + KE   
Sbjct:   337 GIDRAVLNMKNGEVALVTIPPEYAFGSTESKQDLAVVPPNSTVIYEVELVSFVKDKESW- 395

Query:   170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMAL 229
               D+   E+I  A  +K +GNALFK  K   A ++YE A  ++  D  F    K +   L
Sbjct:   396 --DLNNTEKIETAGAKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSKQL 453

Query:   230 AVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259
              V   C+LN AAC LKLK Y++A   C+ V
Sbjct:   454 KVT--CNLNNAACKLKLKDYKQAEKLCTKV 481

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LDC0	FKB42_ARATH	5, ., 2, ., 1, ., 8	0.8223	0.9272	0.6630	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.963
4th Layer	5.2.1.8	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028766001 SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (365 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	1e-13
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	5e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-05

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 66  KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHA 125
           K  K  T  +HY    E     FD +    +P E  LG  +  + G   G+  MK GE  
Sbjct: 4   KAKKGDTVTVHYTGKLEDGT-VFDSSKDRGKPFEFTLGSGQV-IPGWDEGLLGMKVGEKR 61

Query: 126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
            L +  EL YG+EG      + P A LV+EV L+
Sbjct: 62  KLTIPPELAYGEEGLAG-GVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 47  VEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEK 106
           V+ L   +  +++K G G  P K  T  +HY          FD ++   QP E  LG   
Sbjct: 96  VKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGT-VFDSSYDRGQPAEFPLGGVI 154

Query: 107 KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
               G   G+  MK G    L +  EL YG+ G      + P + LV+EV L+  
Sbjct: 155 P---GWDEGLQGMKVGGKRKLTIPPELAYGERG--VPGVIPPNSTLVFEVELLDV 204

Length = 205

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 18/77 (23%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
           A+  K  GNALFK    +EA++ YE A+    D+                    + N+A 
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAE-----------------AYYNLAL 45

Query: 242 CLLKL-KRYEEAIGQCS 257
             LKL K YEEA+    
Sbjct: 46  AYLKLGKDYEEALEDLE 62

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 17/73 (23%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           GN  +K    +EA++ YE A+         +L     D         + N+AA   KL +
Sbjct: 7   GNLYYKLGDYDEALEYYEKAL---------ELDPDNAD--------AYYNLAAAYYKLGK 49

Query: 249 YEEAIGQCSLVSK 261
           YEEA+       +
Sbjct: 50  YEEALEDYEKALE 62

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.97
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.97
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.96
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.93
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.92
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.91
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.9
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.89
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.84
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.65
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.52
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.5
KOG4234	271	consensus TPR repeat-containing protein [General f	99.42
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.29
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.22
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.15
KOG0553	304	consensus TPR repeat-containing protein [General f	99.09
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.02
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	99.01
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.97
PRK01490	435	tig trigger factor; Provisional	98.87
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.86
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	98.81
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.7
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.66
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.6
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.24
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	98.21
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.95
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.93
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.85
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.8
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.61
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.6
PF13371	73	TPR_9: Tetratricopeptide repeat	97.56
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.56
PRK15359	144	type III secretion system chaperone protein SscB;	97.48
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.15
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.02
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.96
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.94
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.94
PRK15359	144	type III secretion system chaperone protein SscB;	96.92
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.91
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	96.88
KOG4555	175	consensus TPR repeat-containing protein [Function	96.76
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.72
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.7
KOG2003	840	consensus TPR repeat-containing protein [General f	96.68
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.63
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.6
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.59
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.58
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.58
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.51
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.34
KOG1310	758	consensus WD40 repeat protein [General function pr	96.33
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.33
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.26
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.1
PRK11189	296	lipoprotein NlpI; Provisional	96.06
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	96.0
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.0
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	95.98
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.95
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.91
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	95.89
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	95.68
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.62
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.59
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.57
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.51
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	95.5
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.46
PRK11189	296	lipoprotein NlpI; Provisional	95.45
PF13431	34	TPR_17: Tetratricopeptide repeat	95.41
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	95.19
PRK10803	263	tol-pal system protein YbgF; Provisional	95.11
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.97
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	94.87
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.78
PRK10370	198	formate-dependent nitrite reductase complex subuni	94.65
PRK12370	553	invasion protein regulator; Provisional	94.62
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	94.6
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	94.58
KOG1125	579	consensus TPR repeat-containing protein [General f	94.49
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.46
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.38
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.33
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.32
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.32
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.31
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	94.22
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	94.19
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	94.08
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	94.08
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	94.05
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	93.97
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	93.7
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	93.58
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.56
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	93.53
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	93.44
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	93.38
PF12688	120	TPR_5: Tetratrico peptide repeat	93.29
PF03704	146	BTAD: Bacterial transcriptional activator domain;	93.25
PRK15331	165	chaperone protein SicA; Provisional	93.15
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.15
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	92.94
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	92.71
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	92.7
PRK10370	198	formate-dependent nitrite reductase complex subuni	92.62
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	92.3
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	92.11
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	92.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	91.98
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	91.93
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	91.9
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	91.8
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	91.76
PRK11788	389	tetratricopeptide repeat protein; Provisional	91.61
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	91.56
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	91.52
PF13512	142	TPR_18: Tetratricopeptide repeat	91.51
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	91.44
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	91.42
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	91.39
PRK10803	263	tol-pal system protein YbgF; Provisional	91.34
KOG1129	478	consensus TPR repeat-containing protein [General f	91.14
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	91.13
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	91.05
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	90.96
PF04212	69	MIT: MIT (microtubule interacting and transport) d	90.77
KOG2003	840	consensus TPR repeat-containing protein [General f	90.3
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	90.09
PRK11788	389	tetratricopeptide repeat protein; Provisional	90.07
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	89.65
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	89.5
KOG4648	536	consensus Uncharacterized conserved protein, conta	89.44
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	89.28
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	89.16
PF13428	44	TPR_14: Tetratricopeptide repeat	88.53
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	88.42
PRK12370	553	invasion protein regulator; Provisional	88.42
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	88.3
PRK15331	165	chaperone protein SicA; Provisional	87.99
KOG4234	271	consensus TPR repeat-containing protein [General f	87.96
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	87.93
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	87.82
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	87.79
KOG0553	304	consensus TPR repeat-containing protein [General f	87.56
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	87.36
KOG2076	895	consensus RNA polymerase III transcription factor	87.28
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	87.15
COG4105	254	ComL DNA uptake lipoprotein [General function pred	86.46
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	85.98
cd02656	75	MIT MIT: domain contained within Microtubule Inter	85.62
COG4783	484	Putative Zn-dependent protease, contains TPR repea	85.59
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	85.23
KOG3785	557	consensus Uncharacterized conserved protein [Funct	85.09
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	84.54
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	84.35
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	84.14
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	83.87
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	83.86
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	83.57
KOG1125	579	consensus TPR repeat-containing protein [General f	83.42
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	83.26
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	82.41
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	81.49
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	81.28
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	81.21
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	80.84
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	80.21

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-42  Score=302.20  Aligned_cols=204  Identities=40%  Similarity=0.605  Sum_probs=183.4

Q ss_pred             eeEeCCcEEEEEEecCCC-C-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcE
Q 024876           47 VEVLHEKVTKQIIKEGHG-Q-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEH  124 (261)
Q Consensus        47 ~~~~~~gi~k~vl~~G~G-~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~  124 (261)
                      +.+++++|.|+||++|.| . +|..|..|+|||.|++.+ + +|+++.   ..|.|.+|++..+|.||+.+|..|++||+
T Consensus        79 ~el~Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~-~-~f~~~~---~~fe~~~Ge~~~vi~Gle~al~~M~~GE~  153 (397)
T KOG0543|consen   79 VELLDGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELED-G-VFDQRE---LRFEFGEGEDIDVIEGLEIALRMMKVGEV  153 (397)
T ss_pred             ecccCCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECC-c-ceeccc---cceEEecCCccchhHHHHHHHHhcCccce
Confidence            445599999999999999 3 999999999999999986 4 777653   34888888833799999999999999999


Q ss_pred             EEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc-cCccccccCCCchhhHhhhhcccchhhHHhhhhhhHHHHHH
Q 024876          125 ALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD-ETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQ  203 (261)
Q Consensus       125 ~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~-~~~~~~e~~~l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~  203 (261)
                      +.|+|+|.|+||..+.. ++.|||+++|.|+|+|++|. +...   .|.+..++++..|.+.|+.||.+||+|+|..|..
T Consensus       154 a~v~i~~~YayG~~~~~-~p~IPPnA~l~yEVeL~~f~~~~~~---s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~  229 (397)
T KOG0543|consen  154 ALVTIDPKYAYGEEGGE-PPLIPPNATLLYEVELLDFELKEDE---SWKMFAEERLEAADRKKERGNVLFKEGKFKLAKK  229 (397)
T ss_pred             EEEEeCcccccCCCCCC-CCCCCCCceEEEEEEEEeeecCccc---ccccchHHHHHHHHHHHHhhhHHHhhchHHHHHH
Confidence            99999999999954432 68999999999999999999 5554   9999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          204 QYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       204 ~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .|.||+.+|+++.+++  +++.+.+..+++.||+|+|+||+|+++|..|+..|++||+
T Consensus       230 ~Yerav~~l~~~~~~~--~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  230 RYERAVSFLEYRRSFD--EEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE  285 (397)
T ss_pred             HHHHHHHHhhccccCC--HHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            9999999999876554  4778889999999999999999999999999999999985

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1e-30  Score=182.39  Aligned_cols=106  Identities=32%  Similarity=0.537  Sum_probs=101.8

Q ss_pred             cEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeC
Q 024876           53 KVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGW  131 (261)
Q Consensus        53 gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~  131 (261)
                      |+.+++|..|+|. .|+.|++|++||++.+.| |+.|||+.+++.||.|.+|.+ ++|.||++++..|.+||+++++|+|
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~d-G~kfDSs~dr~kPfkf~IGkg-eVIkGwdegv~qmsvGekakLti~p   79 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQD-GKKFDSSRDRGKPFKFKIGKG-EVIKGWDEGVAQMSVGEKAKLTISP   79 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecC-CcEeecccccCCCeeEEecCc-ceeechhhcchhccccccceeeecc
Confidence            7899999999997 999999999999999988 899999999999999999999 9999999999999999999999999


Q ss_pred             CCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876          132 ELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (261)
Q Consensus       132 ~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~  162 (261)
                      +|+||..|.  +..||||++|+|+|||+++.
T Consensus        80 d~aYG~~G~--p~~IppNatL~FdVEll~v~  108 (108)
T KOG0544|consen   80 DYAYGPRGH--PGGIPPNATLVFDVELLKVN  108 (108)
T ss_pred             ccccCCCCC--CCccCCCcEEEEEEEEEecC
Confidence            999999996  67899999999999999873

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.1e-31  Score=218.82  Aligned_cols=211  Identities=22%  Similarity=0.304  Sum_probs=177.6

Q ss_pred             eCCcEEEEEEecCCCC--CCCCCCEEEEEEEEEEeCC-CeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEE
Q 024876           50 LHEKVTKQIIKEGHGQ--KPSKYSTCFLHYRAWAEST-RHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHAL  126 (261)
Q Consensus        50 ~~~gi~k~vl~~G~G~--~p~~g~~V~v~y~~~~~~~-g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~  126 (261)
                      .-.||.|+||..|+|.  .-.+|.+|++||.....++ ++++|+|+..++|+.+++|.-| -.+.|+.+|.+|+++|.+.
T Consensus         8 ~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkF-kL~VwE~il~tM~v~Evaq   86 (329)
T KOG0545|consen    8 NVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKF-KLEVWEIILTTMRVHEVAQ   86 (329)
T ss_pred             cchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeecccc-ccHHHHHHHHHHhhhhHHH
Confidence            3579999999999999  4568999999999987654 6799999999999999999984 5899999999999999999


Q ss_pred             EEEeCCC--------------CcCCCCCC-----------------CCC----CCCCCCceEEEEEEeecccCccc-ccc
Q 024876          127 LHVGWEL--------------GYGKEGSF-----------------SFP----NVSPMADLVYEVVLIGFDETKEG-KAR  170 (261)
Q Consensus       127 ~~i~~~~--------------~yg~~g~~-----------------~~~----~ip~~~~l~~~iel~~v~~~~~~-~e~  170 (261)
                      |+|.-..              +-|.....                 +..    -....++|+|.|+|+.|..+..+ ++.
T Consensus        87 F~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~  166 (329)
T KOG0545|consen   87 FWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRET  166 (329)
T ss_pred             hhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhcccc
Confidence            9887421              11221000                 000    01245789999999999999885 679


Q ss_pred             CCCchhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhcccccccc-chhHHHHHHHhhhhhhhHHHHHHHHhhCH
Q 024876          171 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-FGKYRDMALAVKNPCHLNMAACLLKLKRY  249 (261)
Q Consensus       171 ~~l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~-~~~~~~~~~~l~~~~~~N~A~c~lKl~~~  249 (261)
                      |.|+.++|+..+..++++||.+|+.|+|++|..+|+.|+.++.+....+. .+.+|.++..+...+++|+|.|+++.++|
T Consensus       167 WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~  246 (329)
T KOG0545|consen  167 WQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY  246 (329)
T ss_pred             ccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH
Confidence            99999999999999999999999999999999999999999987643332 24689999999999999999999999999


Q ss_pred             HHHHHHHHhhcC
Q 024876          250 EEAIGQCSLVSK  261 (261)
Q Consensus       250 ~~ai~~c~~aL~  261 (261)
                      .+++.+|+++|+
T Consensus       247 yevleh~seiL~  258 (329)
T KOG0545|consen  247 YEVLEHCSEILR  258 (329)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999984

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.4e-29  Score=200.33  Aligned_cols=112  Identities=30%  Similarity=0.475  Sum_probs=105.7

Q ss_pred             cceeEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcE
Q 024876           45 SEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEH  124 (261)
Q Consensus        45 ~~~~~~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~  124 (261)
                      ..+.++++|++|++++.|+|..|..|++|+|||+|++.+ |++|||++.+++|+.|.||   .+|+||.++|.+|++|++
T Consensus        94 ~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~-G~vFDsS~~rg~p~~f~l~---~vI~Gw~egl~~M~vG~k  169 (205)
T COG0545          94 KGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLID-GTVFDSSYDRGQPAEFPLG---GVIPGWDEGLQGMKVGGK  169 (205)
T ss_pred             CCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCC-CCccccccccCCCceeecC---CeeehHHHHHhhCCCCce
Confidence            356789999999999999999999999999999999998 9999999999999999999   699999999999999999


Q ss_pred             EEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876          125 ALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (261)
Q Consensus       125 ~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~  162 (261)
                      ++++|||.++||..|.  ++.||||++|+|+|+|++|.
T Consensus       170 ~~l~IP~~laYG~~g~--~g~Ippns~LvFeVeLl~v~  205 (205)
T COG0545         170 RKLTIPPELAYGERGV--PGVIPPNSTLVFEVELLDVK  205 (205)
T ss_pred             EEEEeCchhccCcCCC--CCCCCCCCeEEEEEEEEecC
Confidence            9999999999999997  35599999999999999873

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=4.8e-25  Score=173.38  Aligned_cols=112  Identities=26%  Similarity=0.455  Sum_probs=99.9

Q ss_pred             CCcEEEEEEecCC-C-CCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEE
Q 024876           51 HEKVTKQIIKEGH-G-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLH  128 (261)
Q Consensus        51 ~~gi~k~vl~~G~-G-~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~  128 (261)
                      .+.+...+++.-. - .+.+.||.+.+||++.+.| |++||||+..++|++|+||.+ ++|+|||.+|.+|++||++.++
T Consensus        67 ~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leD-Gt~fdSS~~rg~P~~f~LG~g-qVIkG~Dqgl~gMCvGEkRkl~  144 (188)
T KOG0549|consen   67 DEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLED-GTKFDSSYSRGAPFTFTLGTG-QVIKGWDQGLLGMCVGEKRKLI  144 (188)
T ss_pred             CCceeEEEEECCccccccccCCCEEEEEEEEEecC-CCEEeeeccCCCCEEEEeCCC-ceeccHhHHhhhhCcccceEEe
Confidence            3556666666632 2 2788999999999998887 999999999999999999999 9999999999999999999999


Q ss_pred             EeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecccCcc
Q 024876          129 VGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE  166 (261)
Q Consensus       129 i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~~~~  166 (261)
                      |||+++||++|.  ++.||++++|+|+|+|+++.....
T Consensus       145 IPp~LgYG~~G~--~~~IP~~A~LiFdiELv~i~~~~~  180 (188)
T KOG0549|consen  145 IPPHLGYGERGA--PPKIPGDAVLIFDIELVKIERGPP  180 (188)
T ss_pred             cCccccCccCCC--CCCCCCCeeEEEEEEEEEeecCCC
Confidence            999999999998  567999999999999999988753

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.92  E-value=8.9e-25  Score=180.55  Aligned_cols=112  Identities=22%  Similarity=0.390  Sum_probs=105.1

Q ss_pred             cceeEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcE
Q 024876           45 SEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEH  124 (261)
Q Consensus        45 ~~~~~~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~  124 (261)
                      ..+..+++|++|+|+++|+|..|..||.|+|||++++.+ |++|++++..+.|+.|.+|   .+++||+++|.+|++|++
T Consensus        95 ~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~d-G~vfdss~~~g~P~~f~l~---~vipG~~eaL~~M~~G~k  170 (206)
T PRK11570         95 EGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLID-GTVFDSSVARGEPAEFPVN---GVIPGWIEALTLMPVGSK  170 (206)
T ss_pred             CCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECC-CCEEEeccCCCCCeEEEee---chhhHHHHHHcCCCCCCE
Confidence            357889999999999999999999999999999999986 8999999988899999997   689999999999999999


Q ss_pred             EEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876          125 ALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (261)
Q Consensus       125 ~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~  162 (261)
                      +.|+||++++||..|.  .+.|||+++|+|+|+|++|.
T Consensus       171 ~~~~IP~~lAYG~~g~--~~~Ipp~s~Lif~veLl~i~  206 (206)
T PRK11570        171 WELTIPHELAYGERGA--GASIPPFSTLVFEVELLEIL  206 (206)
T ss_pred             EEEEECHHHcCCCCCC--CCCcCCCCeEEEEEEEEEEC
Confidence            9999999999999987  47899999999999999873

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.5e-23  Score=172.43  Aligned_cols=110  Identities=26%  Similarity=0.492  Sum_probs=103.4

Q ss_pred             eEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcE-EecCCccchhHHHHHHhhcCCCCcEEE
Q 024876           48 EVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLE-MVLGKEKKEMTGLAIGVSSMKAGEHAL  126 (261)
Q Consensus        48 ~~~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~-~~lG~~~~~i~gle~~l~~Mk~Ge~~~  126 (261)
                      .++++||+|+-++-|+|..+..|++|.+||.+++...|++|++++ .+.|+. |.+|.+ .+|+||+.+|.+|++|.+++
T Consensus       116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~-~~kp~~~f~lg~g-~VIkG~d~gv~GMkvGGkRr  193 (226)
T KOG0552|consen  116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNF-GGKPFKLFRLGSG-EVIKGWDVGVEGMKVGGKRR  193 (226)
T ss_pred             eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeeccc-CCCCccccccCCC-CCCchHHHhhhhhccCCeeE
Confidence            478999999999999999999999999999999996699999986 456888 999999 99999999999999999999


Q ss_pred             EEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876          127 LHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (261)
Q Consensus       127 ~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~  162 (261)
                      |+|||.++||..+.   +.||||++|+|+|+|+.|.
T Consensus       194 viIPp~lgYg~~g~---~~IppnstL~fdVEL~~v~  226 (226)
T KOG0552|consen  194 VIIPPELGYGKKGV---PEIPPNSTLVFDVELLSVK  226 (226)
T ss_pred             EEeCccccccccCc---CcCCCCCcEEEEEEEEecC
Confidence            99999999999996   7999999999999999873

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.90  E-value=4.3e-23  Score=166.61  Aligned_cols=113  Identities=19%  Similarity=0.212  Sum_probs=102.3

Q ss_pred             cceeEeCCcEEEEEEec--CCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCC
Q 024876           45 SEVEVLHEKVTKQIIKE--GHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAG  122 (261)
Q Consensus        45 ~~~~~~~~gi~k~vl~~--G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~G  122 (261)
                      .....+++|++|.+++.  |+|..|..||.|++||++++.+ |++|++++. ..|+.|.+|.+ .+++||+++|.+|++|
T Consensus        62 ~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~d-G~v~~ss~~-~~P~~f~vg~~-~vi~Gl~e~L~~Mk~G  138 (177)
T TIGR03516        62 VKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALD-GDVIYSEEE-LGPQTYKVDQQ-DLFSGLRDGLKLMKEG  138 (177)
T ss_pred             CCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCC-CCEEEeCCC-CCCEEEEeCCc-chhHHHHHHHcCCCCC
Confidence            34578899999999977  5566999999999999999987 899999876 45999999998 8999999999999999


Q ss_pred             cEEEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876          123 EHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (261)
Q Consensus       123 e~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~  162 (261)
                      |++.|++|++++||..|.  .+.||||++|+|+|+|++|.
T Consensus       139 e~~~~~iP~~~AYG~~g~--~~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       139 ETATFLFPSHKAYGYYGD--QNKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             CEEEEEECHHHcCCCCCC--CCCcCcCCcEEEEEEEEEec
Confidence            999999999999999986  46799999999999999985

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.89  E-value=1.7e-22  Score=172.83  Aligned_cols=114  Identities=25%  Similarity=0.473  Sum_probs=105.7

Q ss_pred             ceeEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEE
Q 024876           46 EVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHA  125 (261)
Q Consensus        46 ~~~~~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~  125 (261)
                      .+..+++|++|+|+++|+|..|..||.|+|||++++.+ |++|++++..+.|+.|.++   .+++||+++|.+|++|+++
T Consensus       140 gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~d-G~vfdss~~~g~p~~f~l~---~vipG~~EaL~~Mk~Gek~  215 (269)
T PRK10902        140 GVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLID-GKEFDNSYTRGEPLSFRLD---GVIPGWTEGLKNIKKGGKI  215 (269)
T ss_pred             CcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCC-CCEeeccccCCCceEEecC---CcchHHHHHHhcCCCCcEE
Confidence            46688999999999999999999999999999999876 8999999988899999997   6899999999999999999


Q ss_pred             EEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecccCcc
Q 024876          126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE  166 (261)
Q Consensus       126 ~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~~~~  166 (261)
                      .|+||+.++||..+.   +.|||+++|+|+|+|++|.....
T Consensus       216 ~l~IP~~laYG~~g~---~gIppns~LvfeVeLl~V~~~~~  253 (269)
T PRK10902        216 KLVIPPELAYGKAGV---PGIPANSTLVFDVELLDVKPAPK  253 (269)
T ss_pred             EEEECchhhCCCCCC---CCCCCCCcEEEEEEEEEeccCcc
Confidence            999999999999985   68999999999999999986553

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.84  E-value=2.3e-20  Score=136.16  Aligned_cols=91  Identities=33%  Similarity=0.557  Sum_probs=84.6

Q ss_pred             CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCCCC
Q 024876           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN  145 (261)
Q Consensus        66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~~~  145 (261)
                      .|+.||.|+|||++++.+ |++|++++..+.|++|.+|.+ .+++||+.+|.+|++||++.|.||+.++||..+.. .+.
T Consensus         4 ~~~~gd~V~i~y~~~~~~-g~~~~~~~~~~~~~~~~~g~~-~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~-~~~   80 (94)
T PF00254_consen    4 TPKEGDTVTIHYTGRLED-GKVFDSSYQEGEPFEFRLGSG-QVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLE-PPK   80 (94)
T ss_dssp             SBSTTSEEEEEEEEEETT-SEEEEETTTTTSEEEEETTSS-SSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBC-TTT
T ss_pred             cCCCCCEEEEEEEEEECC-CcEEEEeeecCcceeeeeccC-ccccchhhhcccccCCCEeeeEeCChhhcCccccC-CCC
Confidence            689999999999999985 999999988889999999999 89999999999999999999999999999998863 245


Q ss_pred             CCCCCceEEEEEEe
Q 024876          146 VSPMADLVYEVVLI  159 (261)
Q Consensus       146 ip~~~~l~~~iel~  159 (261)
                      ||++++|+|+|+|+
T Consensus        81 ip~~~~l~f~Iell   94 (94)
T PF00254_consen   81 IPPNSTLVFEIELL   94 (94)
T ss_dssp             BTTTSEEEEEEEEE
T ss_pred             cCCCCeEEEEEEEC
Confidence            99999999999996

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.65  E-value=6.2e-16  Score=122.66  Aligned_cols=71  Identities=17%  Similarity=0.249  Sum_probs=66.7

Q ss_pred             CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCC
Q 024876           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKE  138 (261)
Q Consensus        66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~  138 (261)
                      .++.|+.|++||++++.+ |++|+||+..+.|+.|.+|.+ .+++||+.+|.+|++|+++.|.|||+.+||..
T Consensus         4 ~i~~~~~V~v~Y~~~~~d-G~v~dst~~~~~P~~f~~G~g-~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~   74 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDD-GSTAESTRNNGKPALFRLGDG-SLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP   74 (156)
T ss_pred             ccCCCCEEEEEEEEEeCC-CCEEEECCCCCCCEEEEeCCC-CccHHHHHHHcCCCCCCEEEEEEChHHhcCCC
Confidence            478899999999999976 899999987788999999999 89999999999999999999999999999985

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=7.4e-14  Score=110.70  Aligned_cols=71  Identities=24%  Similarity=0.279  Sum_probs=66.8

Q ss_pred             CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCC
Q 024876           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKE  138 (261)
Q Consensus        66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~  138 (261)
                      ++..|+.|++||++++.+ |++||+|.....|+.|.+|.+ ++++||+.||.+|.+|++..|.|||+.|||..
T Consensus         2 ~i~k~~~V~i~Y~~~~~d-g~v~Dtt~e~~~P~~~i~G~g-~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~   72 (174)
T COG1047           2 KIEKGDVVSLHYTLKVED-GEVVDTTDENYGPLTFIVGAG-QLIPGLEEALLGKEVGEEFTVEIPPEDAFGEY   72 (174)
T ss_pred             cccCCCEEEEEEEEEecC-CcEEEcccccCCCeEEEecCC-CcchhHHHHHhCCCCCceeEEEeCchHhcCCC
Confidence            467899999999999998 999999977578999999999 99999999999999999999999999999986

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.50  E-value=8.7e-14  Score=113.48  Aligned_cols=70  Identities=23%  Similarity=0.338  Sum_probs=64.8

Q ss_pred             CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCC
Q 024876           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKE  138 (261)
Q Consensus        66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~  138 (261)
                      ++..++.|+|+|++++.+ |++|++|.. ..|++|++|.+ .++|+|+.+|.+|.+|++..|+|+|+.+||..
T Consensus         2 kI~~~~vV~l~Y~l~~~d-G~v~dst~~-~~Pl~~~~G~g-~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~   71 (196)
T PRK10737          2 KVAKDLVVSLAYQVRTED-GVLVDESPV-SAPLDYLHGHG-SLISGLETALEGHEVGDKFDVAVGANDAYGQY   71 (196)
T ss_pred             ccCCCCEEEEEEEEEeCC-CCEEEecCC-CCCeEEEeCCC-cchHHHHHHHcCCCCCCEEEEEEChHHhcCCC
Confidence            367899999999999976 899999964 67999999999 99999999999999999999999999999886

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.42  E-value=2.3e-13  Score=109.68  Aligned_cols=73  Identities=34%  Similarity=0.445  Sum_probs=66.0

Q ss_pred             hHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHH
Q 024876          177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC  256 (261)
Q Consensus       177 e~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c  256 (261)
                      ..+..+.++|..||.+|+.|.|..|..+|+.||..+....            .+++..||+|+|+|.+||+.|..||.+|
T Consensus        90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~------------~e~rsIly~Nraaa~iKl~k~e~aI~dc  157 (271)
T KOG4234|consen   90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS------------TEERSILYSNRAAALIKLRKWESAIEDC  157 (271)
T ss_pred             HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc------------HHHHHHHHhhhHHHHHHhhhHHHHHHHH
Confidence            3488999999999999999999999999999999987542            3567899999999999999999999999


Q ss_pred             HhhcC
Q 024876          257 SLVSK  261 (261)
Q Consensus       257 ~~aL~  261 (261)
                      ++||+
T Consensus       158 sKaie  162 (271)
T KOG4234|consen  158 SKAIE  162 (271)
T ss_pred             HhhHh
Confidence            99974

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=4.3e-12  Score=112.15  Aligned_cols=81  Identities=35%  Similarity=0.565  Sum_probs=74.7

Q ss_pred             ecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCC
Q 024876           60 KEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKE  138 (261)
Q Consensus        60 ~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~  138 (261)
                      ++|.|. .|..|+.|.+||++++.+ |+.||||.+ +.|+.|.+|.| .+|.||+.++.+|+.              |..
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~d-gt~fdss~d-~~~~~~~lg~g-~vi~~~~~gv~tm~~--------------g~~   63 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLD-GTKFDSSRD-GDPFKFDLGKG-SVIKGWDLGVATMKK--------------GEA   63 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecC-CeecccccC-CCceeeecCCC-ccccccccccccccc--------------ccc
Confidence            479999 999999999999999998 999999988 88999999999 999999999999998              555


Q ss_pred             CCCCCCCCCCCCceEEEEEEe
Q 024876          139 GSFSFPNVSPMADLVYEVVLI  159 (261)
Q Consensus       139 g~~~~~~ip~~~~l~~~iel~  159 (261)
                      +.  ||.||++++|.|+|+|+
T Consensus        64 ~~--pp~ip~~a~l~fe~el~   82 (397)
T KOG0543|consen   64 GS--PPKIPSNATLLFEVELL   82 (397)
T ss_pred             CC--CCCCCCCcceeeeeccc
Confidence            55  78899999999999984

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=1.4e-11  Score=110.82  Aligned_cols=75  Identities=32%  Similarity=0.474  Sum_probs=68.4

Q ss_pred             cCCCchhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCH
Q 024876          170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY  249 (261)
Q Consensus       170 ~~~l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~  249 (261)
                      ...++.+++++.+..+|.+||.+|+.|+|..||++|..||.++...                 ...|+|+|+||..+|+|
T Consensus       103 ~~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e-----------------piFYsNraAcY~~lgd~  165 (606)
T KOG0547|consen  103 KKAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE-----------------PIFYSNRAACYESLGDW  165 (606)
T ss_pred             hhccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC-----------------chhhhhHHHHHHHHhhH
Confidence            3456788999999999999999999999999999999999987531                 47999999999999999


Q ss_pred             HHHHHHHHhhcC
Q 024876          250 EEAIGQCSLVSK  261 (261)
Q Consensus       250 ~~ai~~c~~aL~  261 (261)
                      .+++.+|++||+
T Consensus       166 ~~Vied~TkALE  177 (606)
T KOG0547|consen  166 EKVIEDCTKALE  177 (606)
T ss_pred             HHHHHHHHHHhh
Confidence            999999999985

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=4.9e-11  Score=102.82  Aligned_cols=69  Identities=29%  Similarity=0.408  Sum_probs=61.8

Q ss_pred             hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      +.|...|+.||.+||.++|+.|...|.++|+--..+             ..+.+.||+|+|+|++-+|+|..||.+|+.|
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-------------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a  145 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD-------------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAA  145 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-------------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            388999999999999999999999999999764322             4577899999999999999999999999999


Q ss_pred             cC
Q 024876          260 SK  261 (261)
Q Consensus       260 L~  261 (261)
                      |.
T Consensus       146 l~  147 (390)
T KOG0551|consen  146 LK  147 (390)
T ss_pred             Hh
Confidence            74

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.09  E-value=1.7e-10  Score=98.44  Aligned_cols=72  Identities=32%  Similarity=0.415  Sum_probs=64.2

Q ss_pred             CchhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHH
Q 024876          173 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEA  252 (261)
Q Consensus       173 l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~a  252 (261)
                      .+..+-...|+++|.+||.+.+.++|..|+.+|.+||.+...+                 ...|+|+|++|++||+|..|
T Consensus        72 ~~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n-----------------AVyycNRAAAy~~Lg~~~~A  134 (304)
T KOG0553|consen   72 LTPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN-----------------AVYYCNRAAAYSKLGEYEDA  134 (304)
T ss_pred             cChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-----------------chHHHHHHHHHHHhcchHHH
Confidence            3344778999999999999999999999999999999986432                 47999999999999999999


Q ss_pred             HHHHHhhcC
Q 024876          253 IGQCSLVSK  261 (261)
Q Consensus       253 i~~c~~aL~  261 (261)
                      +++|..||.
T Consensus       135 VkDce~Al~  143 (304)
T KOG0553|consen  135 VKDCESALS  143 (304)
T ss_pred             HHHHHHHHh
Confidence            999999873

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.02  E-value=2.5e-10  Score=99.11  Aligned_cols=70  Identities=31%  Similarity=0.418  Sum_probs=62.1

Q ss_pred             chhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHH
Q 024876          174 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  253 (261)
Q Consensus       174 ~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai  253 (261)
                      -.++.+..+..+|++||.+||+|+|.+|+.+|.+++....+                 ....|.|+|++|+|++.|..|.
T Consensus        89 I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~-----------------NpV~~~NRA~AYlk~K~FA~AE  151 (536)
T KOG4648|consen   89 IAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH-----------------NPVYHINRALAYLKQKSFAQAE  151 (536)
T ss_pred             HHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCC-----------------CccchhhHHHHHHHHHHHHHHH
Confidence            35677888999999999999999999999999999987543                 2478999999999999999999


Q ss_pred             HHHHhhc
Q 024876          254 GQCSLVS  260 (261)
Q Consensus       254 ~~c~~aL  260 (261)
                      .+|+.||
T Consensus       152 ~DC~~Ai  158 (536)
T KOG4648|consen  152 EDCEAAI  158 (536)
T ss_pred             HhHHHHH
Confidence            9999986

>TIGR00115 tig trigger factor

Probab=99.01  E-value=1.5e-08  Score=92.87  Aligned_cols=88  Identities=17%  Similarity=0.288  Sum_probs=76.9

Q ss_pred             CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCCCC
Q 024876           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN  145 (261)
Q Consensus        66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~~~  145 (261)
                      .+..||.|+++|+++.  +|..|+++.  ..++.|.+|.+ .+++||+.+|.+|++|++..|.++....|+....     
T Consensus       146 ~~~~gD~V~v~~~~~~--dg~~~~~~~--~~~~~~~lg~~-~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----  215 (408)
T TIGR00115       146 AAEKGDRVTIDFEGFI--DGEAFEGGK--AENFSLELGSG-QFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----  215 (408)
T ss_pred             ccCCCCEEEEEEEEEE--CCEECcCCC--CCCeEEEECCC-CcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----
Confidence            5788999999999976  488888763  46899999999 8999999999999999999999998888876543     


Q ss_pred             CCCCCceEEEEEEeecccCc
Q 024876          146 VSPMADLVYEVVLIGFDETK  165 (261)
Q Consensus       146 ip~~~~l~~~iel~~v~~~~  165 (261)
                        +|.++.|.|+|.+|....
T Consensus       216 --~gk~~~f~v~i~~I~~~~  233 (408)
T TIGR00115       216 --AGKEATFKVTVKEVKEKE  233 (408)
T ss_pred             --CCCeEEEEEEEEEeccCC
Confidence              588999999999998775

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.97  E-value=9.5e-10  Score=105.78  Aligned_cols=96  Identities=23%  Similarity=0.279  Sum_probs=81.9

Q ss_pred             CCCCCCCceEEEEEEeecccCccccccCCCchhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchh
Q 024876          144 PNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGK  223 (261)
Q Consensus       144 ~~ip~~~~l~~~iel~~v~~~~~~~e~~~l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~  223 (261)
                      +.+|++.++...+++.++....    .|.++.+++...+..+|+.||.+|+.|+|..|+..|++||.+...         
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~---------  159 (615)
T TIGR00990        93 STAPKNAPVEPADELPEIDESS----VANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD---------  159 (615)
T ss_pred             CCCCCCCCCCccccccccchhh----cccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---------
Confidence            4566777777777777666543    799999999999999999999999999999999999999986431         


Q ss_pred             HHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          224 YRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       224 ~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                               ...|+|+|.||+++++|++|+.+|++||+
T Consensus       160 ---------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~  188 (615)
T TIGR00990       160 ---------PVYYSNRAACHNALGDWEKVVEDTTAALE  188 (615)
T ss_pred             ---------hHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                     14699999999999999999999999974

>PRK01490 tig trigger factor; Provisional

Probab=98.87  E-value=5.9e-08  Score=89.68  Aligned_cols=88  Identities=16%  Similarity=0.280  Sum_probs=76.1

Q ss_pred             CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCCCC
Q 024876           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN  145 (261)
Q Consensus        66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~~~  145 (261)
                      .+..||.|+|+|+++.  +|+.|+++  ...++.|.+|.+ .+++||+.+|.||++|++..|.++....|+....     
T Consensus       157 ~~~~gD~V~vd~~~~~--~g~~~~~~--~~~~~~~~lg~~-~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----  226 (435)
T PRK01490        157 PAENGDRVTIDFVGSI--DGEEFEGG--KAEDFSLELGSG-RFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----  226 (435)
T ss_pred             cCCCCCEEEEEEEEEE--CCEECcCC--CCCceEEEEcCC-CcchhHHHHhCCCCCCCeeEEEecCccccccccC-----
Confidence            4789999999999997  47888876  346899999999 8999999999999999999999988777765443     


Q ss_pred             CCCCCceEEEEEEeecccCc
Q 024876          146 VSPMADLVYEVVLIGFDETK  165 (261)
Q Consensus       146 ip~~~~l~~~iel~~v~~~~  165 (261)
                        +|.++.|.|+|.+|....
T Consensus       227 --agk~~~f~v~v~~V~~~~  244 (435)
T PRK01490        227 --AGKEATFKVTVKEVKEKE  244 (435)
T ss_pred             --CCCeEEEEEEEEEeccCC
Confidence              578899999999998765

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=2.9e-09  Score=96.93  Aligned_cols=64  Identities=33%  Similarity=0.445  Sum_probs=56.5

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+...|++||.+|+.|+|..|++.|.+||..-..+                 ..+|+|+|+||+||+.+..|+.+|..++
T Consensus       357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D-----------------a~lYsNRAac~~kL~~~~~aL~Da~~~i  419 (539)
T KOG0548|consen  357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED-----------------ARLYSNRAACYLKLGEYPEALKDAKKCI  419 (539)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch-----------------hHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            46778899999999999999999999999764221                 3799999999999999999999999987


Q ss_pred             C
Q 024876          261 K  261 (261)
Q Consensus       261 ~  261 (261)
                      +
T Consensus       420 e  420 (539)
T KOG0548|consen  420 E  420 (539)
T ss_pred             h
Confidence            4

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=2.1e-07  Score=85.49  Aligned_cols=87  Identities=15%  Similarity=0.264  Sum_probs=73.7

Q ss_pred             CCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCCCCC
Q 024876           67 PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNV  146 (261)
Q Consensus        67 p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~~~i  146 (261)
                      +..||+|+|.|.|+.  +|..|...  ....+.|.||.| ++||||+.+|.||+.|+...|.+.....|.....      
T Consensus       158 a~~gD~v~IDf~g~i--Dg~~fegg--~ae~~~l~lGs~-~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------  226 (441)
T COG0544         158 AENGDRVTIDFEGSV--DGEEFEGG--KAENFSLELGSG-RFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------  226 (441)
T ss_pred             cccCCEEEEEEEEEE--cCeeccCc--cccCeEEEEcCC-CchhhHHhhhccCcCCCeeEEEEEcccccchhHh------
Confidence            889999999999966  47888775  345799999999 9999999999999999999987776666665443      


Q ss_pred             CCCCceEEEEEEeecccCc
Q 024876          147 SPMADLVYEVVLIGFDETK  165 (261)
Q Consensus       147 p~~~~l~~~iel~~v~~~~  165 (261)
                       .|.+..|.|+|..|....
T Consensus       227 -aGK~a~F~V~vkeVk~~e  244 (441)
T COG0544         227 -AGKEATFKVKVKEVKKRE  244 (441)
T ss_pred             -CCCceEEEEEEEEEeecC
Confidence             578899999999998876

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=7.6e-09  Score=85.79  Aligned_cols=65  Identities=28%  Similarity=0.395  Sum_probs=57.8

Q ss_pred             hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      ..+.++|+.||.+|..++|..|+.+|.+||..-.                 .-++-+.|+|+||+|+++|+.+..+|..|
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP-----------------~~~~Y~tnralchlk~~~~~~v~~dcrra   70 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINP-----------------TVASYYTNRALCHLKLKHWEPVEEDCRRA   70 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCC-----------------CcchhhhhHHHHHHHhhhhhhhhhhHHHH
Confidence            5678899999999999999999999999996532                 23578999999999999999999999999


Q ss_pred             cC
Q 024876          260 SK  261 (261)
Q Consensus       260 L~  261 (261)
                      |+
T Consensus        71 lq   72 (284)
T KOG4642|consen   71 LQ   72 (284)
T ss_pred             Hh
Confidence            74

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.66  E-value=3.4e-08  Score=67.04  Aligned_cols=63  Identities=29%  Similarity=0.360  Sum_probs=54.8

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhh-CHHHHHHHHHhhc
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVS  260 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~-~~~~ai~~c~~aL  260 (261)
                      +......|+.+|..|+|..|+..|++|+.+...                 ...++.|+|.|+++++ +|.+|+.++.+||
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-----------------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-----------------NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-----------------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            455678999999999999999999999997432                 1359999999999999 7999999999997


Q ss_pred             C
Q 024876          261 K  261 (261)
Q Consensus       261 ~  261 (261)
                      +
T Consensus        66 ~   66 (69)
T PF13414_consen   66 K   66 (69)
T ss_dssp             H
T ss_pred             H
Confidence            3

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=3.1e-08  Score=87.93  Aligned_cols=71  Identities=24%  Similarity=0.253  Sum_probs=60.6

Q ss_pred             HhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHH
Q 024876          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (261)
Q Consensus       178 ~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~  257 (261)
                      ..+.....|+.||..||+|+|..|..+|..||.+-...             ....+.||.|+|++.+++++..+||.+|+
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n-------------~~~naklY~nra~v~~rLgrl~eaisdc~  311 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN-------------KKTNAKLYGNRALVNIRLGRLREAISDCN  311 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-------------cchhHHHHHHhHhhhcccCCchhhhhhhh
Confidence            35677889999999999999999999999999863321             34457899999999999999999999999


Q ss_pred             hhcC
Q 024876          258 LVSK  261 (261)
Q Consensus       258 ~aL~  261 (261)
                      .||+
T Consensus       312 ~Al~  315 (486)
T KOG0550|consen  312 EALK  315 (486)
T ss_pred             hhhh
Confidence            9874

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.24  E-value=1.9e-06  Score=59.82  Aligned_cols=71  Identities=18%  Similarity=0.156  Sum_probs=56.5

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+..+...|..++..|+|.+|+..|++|+.+.... ..         -....+.++.|+|.|+..+|++++|+....+||
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~---------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQL-GD---------DHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-TT---------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-CC---------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34556778999999999999999999999984321 10         023347899999999999999999999999987


Q ss_pred             C
Q 024876          261 K  261 (261)
Q Consensus       261 ~  261 (261)
                      +
T Consensus        74 ~   74 (78)
T PF13424_consen   74 D   74 (78)
T ss_dssp             H
T ss_pred             h
Confidence            3

...

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=3.1e-07  Score=80.23  Aligned_cols=87  Identities=20%  Similarity=0.211  Sum_probs=72.7

Q ss_pred             chhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchh--H-HHHHHHhhhhhhhHHHHHHHHhhCHH
Q 024876          174 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGK--Y-RDMALAVKNPCHLNMAACLLKLKRYE  250 (261)
Q Consensus       174 ~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~--~-~~~~~~l~~~~~~N~A~c~lKl~~~~  250 (261)
                      +....+..+..+|+.||..|++++|..|..+|.++++++.. ++.+...+  + ...+..++..++.|+|+|-+|++.|.
T Consensus       214 ~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~-~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~  292 (372)
T KOG0546|consen  214 DFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSE-QSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRG  292 (372)
T ss_pred             ccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcc-cccccccccccccccccccccccccchHHhcccccCCC
Confidence            45667889999999999999999999999999999999985 22222122  1 34578899999999999999999999


Q ss_pred             HHHHHHHhhcC
Q 024876          251 EAIGQCSLVSK  261 (261)
Q Consensus       251 ~ai~~c~~aL~  261 (261)
                      .|+..|..+|+
T Consensus       293 ~a~~~~~~~~~  303 (372)
T KOG0546|consen  293 GARFRTNEALR  303 (372)
T ss_pred             cceeccccccc
Confidence            99999988764

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=8.4e-06  Score=74.75  Aligned_cols=62  Identities=26%  Similarity=0.289  Sum_probs=54.4

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +...|++||..|..|+|..|++.|..||.+-..                 ...+|+|+++||.++++|.+|+.++++..
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~-----------------nhvlySnrsaa~a~~~~~~~al~da~k~~   63 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPT-----------------NHVLYSNRSAAYASLGSYEKALKDATKTR   63 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCC-----------------ccchhcchHHHHHHHhhHHHHHHHHHHHH
Confidence            457899999999999999999999999986332                 25799999999999999999999988764

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.93  E-value=1.5e-05  Score=71.90  Aligned_cols=61  Identities=16%  Similarity=0.220  Sum_probs=43.8

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..++..|+.+|..|+|..|+..|.+||.+-...                 ..+|+|+|.||+++++|.+|+.++.+||
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-----------------~~a~~~~a~~~~~~g~~~eAl~~~~~Al   63 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-----------------AELYADRAQANIKLGNFTEAVADANKAI   63 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            457788999999999999999999999864321                 2355566666666666666666665554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.85  E-value=4.3e-05  Score=51.31  Aligned_cols=52  Identities=29%  Similarity=0.393  Sum_probs=43.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          192 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       192 ~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +++.|+|..|+..|++++.....+                 ..++.++|.|++++|++++|...+.+++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~-----------------~~~~~~la~~~~~~g~~~~A~~~l~~~~   52 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDN-----------------PEARLLLAQCYLKQGQYDEAEELLERLL   52 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTS-----------------HHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            478999999999999999875432                 3577899999999999999999998775

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.80  E-value=4.6e-05  Score=50.82  Aligned_cols=57  Identities=21%  Similarity=0.300  Sum_probs=48.7

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..|..+++.|+|..|+..|+++++....                 ...++.+++.|++.+|+|++|+....++|
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   58 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPD-----------------NPEAWYLLGRILYQQGRYDEALAYYERAL   58 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTT-----------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4688999999999999999999986422                 24689999999999999999999998876

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.61  E-value=3.8e-05  Score=69.88  Aligned_cols=64  Identities=20%  Similarity=0.227  Sum_probs=55.8

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+...|.++|.+|+.+.|..|+..|.|||++=.++                 +..+.|+|+.++|.++|..|+.+|++|+
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnc-----------------a~~~anRa~a~lK~e~~~~Al~Da~kai   65 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNC-----------------AIYFANRALAHLKVESFGGALHDALKAI   65 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcc-----------------eeeechhhhhheeechhhhHHHHHHhhh
Confidence            46788999999999999999999999999864332                 4678899999999999999999999987


Q ss_pred             C
Q 024876          261 K  261 (261)
Q Consensus       261 ~  261 (261)
                      +
T Consensus        66 e   66 (476)
T KOG0376|consen   66 E   66 (476)
T ss_pred             h
Confidence            5

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=5.7e-05  Score=67.56  Aligned_cols=70  Identities=31%  Similarity=0.467  Sum_probs=61.5

Q ss_pred             chhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHH
Q 024876          174 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  253 (261)
Q Consensus       174 ~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai  253 (261)
                      ..++--..++..|++||.++++++|..|+..|..||+.+..+                 +.-|.|+|+|++.+++|++|+
T Consensus        41 ~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~-----------------a~yy~nRAa~~m~~~~~~~a~  103 (486)
T KOG0550|consen   41 FSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN-----------------ASYYSNRAATLMMLGRFEEAL  103 (486)
T ss_pred             ccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc-----------------hhhhchhHHHHHHHHhHhhcc
Confidence            345667889999999999999999999999999999987532                 578999999999999999999


Q ss_pred             HHHHhhc
Q 024876          254 GQCSLVS  260 (261)
Q Consensus       254 ~~c~~aL  260 (261)
                      -++.+.+
T Consensus       104 ~dar~~~  110 (486)
T KOG0550|consen  104 GDARQSV  110 (486)
T ss_pred             cchhhhe
Confidence            9887654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.56  E-value=0.00022  Score=48.52  Aligned_cols=56  Identities=30%  Similarity=0.430  Sum_probs=48.4

Q ss_pred             hHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       189 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .+-++++++|..|+..+.+++.+...                 ...++.++|.|+.++|+|.+|+..++.+|+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-----------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPD-----------------DPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcc-----------------cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            35678999999999999999987432                 246899999999999999999999998873

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.56  E-value=0.00012  Score=66.81  Aligned_cols=68  Identities=18%  Similarity=0.209  Sum_probs=55.7

Q ss_pred             hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      ..+....+.|+.+|+.|+|..|+..|++||.+-...              .....+|+|+|.||.++|++++|+.+..+|
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~--------------aeA~~A~yNLAcaya~LGr~dEAla~LrrA  138 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP--------------DEAQAAYYNKACCHAYREEGKKAADCLRTA  138 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            445666778999999999999999999999874321              001146899999999999999999999998


Q ss_pred             cC
Q 024876          260 SK  261 (261)
Q Consensus       260 L~  261 (261)
                      |+
T Consensus       139 Le  140 (453)
T PLN03098        139 LR  140 (453)
T ss_pred             HH
Confidence            74

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.48  E-value=0.0003  Score=55.03  Aligned_cols=59  Identities=12%  Similarity=0.026  Sum_probs=37.9

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ...|..+.+.|+|..|+..|.+++.+-.                 -....++|++.|+.++|++++|+..+..||+
T Consensus        62 ~~lg~~~~~~g~~~~A~~~y~~Al~l~p-----------------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~  120 (144)
T PRK15359         62 IALAGTWMMLKEYTTAINFYGHALMLDA-----------------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIK  120 (144)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCC-----------------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3344444555555555555555554321                 1235788999999999999999999888863

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.15  E-value=0.00044  Score=39.75  Aligned_cols=28  Identities=21%  Similarity=0.306  Sum_probs=25.0

Q ss_pred             hhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          234 PCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .+++|++.||+.+++|.+|+.+|.+||+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            4789999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.02  E-value=0.0018  Score=45.40  Aligned_cols=55  Identities=31%  Similarity=0.414  Sum_probs=40.2

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      ..|.-+|+.|+|.+|+..+++ +..-.                 -...++.-+|.|++++++|++|+..-.+|
T Consensus        30 ~la~~~~~~~~y~~A~~~~~~-~~~~~-----------------~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   30 NLAQCYFQQGKYEEAIELLQK-LKLDP-----------------SNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHC-HTHHH-----------------CHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHH-hCCCC-----------------CCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            368889999999999999988 43211                 11245555699999999999999887654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.96  E-value=0.0018  Score=51.67  Aligned_cols=69  Identities=17%  Similarity=0.012  Sum_probs=55.9

Q ss_pred             hhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (261)
Q Consensus       179 ~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~  258 (261)
                      ...+...-..|..++..++|..|+..|++|+.+....              .....++.|+|.++.+++++++|+..+.+
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--------------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~   97 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP--------------YDRSYILYNIGLIHTSNGEHTKALEYYFQ   97 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc--------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3456666777999999999999999999999874321              01234899999999999999999999999


Q ss_pred             hcC
Q 024876          259 VSK  261 (261)
Q Consensus       259 aL~  261 (261)
                      ||.
T Consensus        98 Al~  100 (168)
T CHL00033         98 ALE  100 (168)
T ss_pred             HHH
Confidence            873

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.94  E-value=0.00015  Score=63.62  Aligned_cols=71  Identities=21%  Similarity=0.333  Sum_probs=63.3

Q ss_pred             chhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHH
Q 024876          174 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  253 (261)
Q Consensus       174 ~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai  253 (261)
                      ..++.+..++.+|-.+-+.|..|.+..|+..|.+||.+-..                 ...+|.+++.+++||+.+..||
T Consensus       106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~-----------------~a~l~~kr~sv~lkl~kp~~ai  168 (377)
T KOG1308|consen  106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPP-----------------LAILYAKRASVFLKLKKPNAAI  168 (377)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCc-----------------hhhhcccccceeeeccCCchhh
Confidence            36788999999999999999999999999999999976322                 2468999999999999999999


Q ss_pred             HHHHhhcC
Q 024876          254 GQCSLVSK  261 (261)
Q Consensus       254 ~~c~~aL~  261 (261)
                      ++|+.||+
T Consensus       169 rD~d~A~e  176 (377)
T KOG1308|consen  169 RDCDFAIE  176 (377)
T ss_pred             hhhhhhhc
Confidence            99999874

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.00076  Score=53.97  Aligned_cols=58  Identities=22%  Similarity=0.352  Sum_probs=44.9

Q ss_pred             EecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecccC
Q 024876          100 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET  164 (261)
Q Consensus       100 ~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~~  164 (261)
                      |++|.+ .+|+|.+.++.+|+.||++++.+||+++||..+..      .-..++|.+.++.+...
T Consensus         1 ~~~g~~-~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~------~~~~~~~~~~l~~~~~~   58 (188)
T KOG0549|consen    1 FTLGQG-FVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG------DLNILVITILLVLLFRA   58 (188)
T ss_pred             Ccccce-EEecCHHHHhhhhhccccceeccCCcccccccccc------cccceEEEeeeeehhhh
Confidence            467888 79999999999999999999999999999955431      12335666666655443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=96.92  E-value=0.0024  Score=49.84  Aligned_cols=60  Identities=18%  Similarity=0.186  Sum_probs=50.9

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ....|..++..|+|..|+..|++++.+-..                 ....+.|+|.|+.++|+|.+|+..+.+||+
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-----------------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-----------------SWRAHIALAGTWMMLKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            335689999999999999999999975322                 136889999999999999999999999873

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.91  E-value=0.002  Score=51.69  Aligned_cols=70  Identities=17%  Similarity=0.105  Sum_probs=55.5

Q ss_pred             HhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHH
Q 024876          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (261)
Q Consensus       178 ~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~  257 (261)
                      +...+......|..++..|+|..|+..|++++.......              ....++.|+|.|+.++|+|++|+....
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~la~~~~~~g~~~~A~~~~~   96 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN--------------DRSYILYNMGIIYASNGEHDKALEYYH   96 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--------------hHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            344555677888999999999999999999998632210              023588999999999999999999998


Q ss_pred             hhcC
Q 024876          258 LVSK  261 (261)
Q Consensus       258 ~aL~  261 (261)
                      ++|+
T Consensus        97 ~al~  100 (172)
T PRK02603         97 QALE  100 (172)
T ss_pred             HHHH
Confidence            8863

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=96.88  E-value=0.0015  Score=61.29  Aligned_cols=73  Identities=19%  Similarity=0.129  Sum_probs=60.3

Q ss_pred             hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      ..+..++..|+-+-..++|.+|+..|++|+.+....+...         ..-....+.|||..|.+.|+|.+|..+|..|
T Consensus       239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~---------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A  309 (508)
T KOG1840|consen  239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED---------HPAVAATLNNLAVLYYKQGKFAEAEEYCERA  309 (508)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            3444556789999999999999999999999987654322         2345678999999999999999999999999


Q ss_pred             cC
Q 024876          260 SK  261 (261)
Q Consensus       260 L~  261 (261)
                      ++
T Consensus       310 l~  311 (508)
T KOG1840|consen  310 LE  311 (508)
T ss_pred             HH
Confidence            74

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.76  E-value=0.0038  Score=47.77  Aligned_cols=69  Identities=19%  Similarity=0.194  Sum_probs=59.8

Q ss_pred             hhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHH
Q 024876          176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ  255 (261)
Q Consensus       176 ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~  255 (261)
                      ...++....+.-+|-.+-..|+...|+.+|.++|.++..                 +.+.|+|+|.++--.++..+|+.+
T Consensus        37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~-----------------raSayNNRAQa~RLq~~~e~ALdD   99 (175)
T KOG4555|consen   37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPE-----------------RASAYNNRAQALRLQGDDEEALDD   99 (175)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc-----------------chHhhccHHHHHHHcCChHHHHHH
Confidence            345677777888888899999999999999999988643                 358999999999999999999999


Q ss_pred             HHhhcC
Q 024876          256 CSLVSK  261 (261)
Q Consensus       256 c~~aL~  261 (261)
                      .++||+
T Consensus       100 Ln~Ale  105 (175)
T KOG4555|consen  100 LNKALE  105 (175)
T ss_pred             HHHHHH
Confidence            999874

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.72  E-value=0.0037  Score=47.54  Aligned_cols=27  Identities=30%  Similarity=0.335  Sum_probs=18.5

Q ss_pred             hhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          234 PCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..+.|+|.|++.+|+++.|+.....++
T Consensus        86 ~~~~~la~~~~~~g~~~~A~~~~~~al  112 (135)
T TIGR02552        86 RPYFHAAECLLALGEPESALKALDLAI  112 (135)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456677777777777777777666654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.70  E-value=0.0051  Score=41.86  Aligned_cols=27  Identities=26%  Similarity=0.343  Sum_probs=16.8

Q ss_pred             hhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          234 PCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .++.+++.+++.++++..|...+..++
T Consensus        69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~   95 (100)
T cd00189          69 KAYYNLGLAYYKLGKYEEALEAYEKAL   95 (100)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            355566666666666666666665554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.68  E-value=0.00052  Score=62.37  Aligned_cols=63  Identities=19%  Similarity=0.307  Sum_probs=53.7

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      .-..||-+|++.+|..|++.|+-||..+...            -+.+++++++|+...+++.|+|+.||...+..
T Consensus       240 kmnigni~~kkr~fskaikfyrmaldqvpsi------------nk~~rikil~nigvtfiq~gqy~dainsfdh~  302 (840)
T KOG2003|consen  240 KMNIGNIHFKKREFSKAIKFYRMALDQVPSI------------NKDMRIKILNNIGVTFIQAGQYDDAINSFDHC  302 (840)
T ss_pred             eeeecceeeehhhHHHHHHHHHHHHhhcccc------------chhhHHHHHhhcCeeEEecccchhhHhhHHHH
Confidence            4467999999999999999999999876542            15788999999999999999999999865543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.63  E-value=0.0044  Score=48.95  Aligned_cols=60  Identities=13%  Similarity=0.150  Sum_probs=35.8

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      ..+-..|..+|..|+|..|.+.|+-.+.+-...                 ..-+.|+++|+..+|+|.+||.....|
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-----------------~~y~~gLG~~~Q~~g~~~~AI~aY~~A   95 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-----------------FDYWFRLGECCQAQKHWGEAIYAYGRA   95 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----------------HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            445667788888888888888887776552221                 234455555555555555555444443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.60  E-value=0.0045  Score=55.83  Aligned_cols=61  Identities=18%  Similarity=0.103  Sum_probs=51.9

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .+-.+|..+++.|+|..|+..|.+|+.+-..                 ...+|++++.+++++|+|.+|+..+.++|+
T Consensus        38 a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-----------------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~   98 (356)
T PLN03088         38 LYADRAQANIKLGNFTEAVADANKAIELDPS-----------------LAKAYLRKGTACMKLEEYQTAKAALEKGAS   98 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3456788899999999999999999986432                 135799999999999999999999998873

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.59  E-value=0.0048  Score=43.22  Aligned_cols=49  Identities=24%  Similarity=0.405  Sum_probs=39.0

Q ss_pred             hhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876          195 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (261)
Q Consensus       195 ~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~  258 (261)
                      +++|..|+..|.+++..-...              . ....++++|.|++++++|.+|+..+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~--------------~-~~~~~~~la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTN--------------P-NSAYLYNLAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGT--------------H-HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred             CccHHHHHHHHHHHHHHCCCC--------------h-hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            589999999999999864321              0 235788899999999999999998865

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.58  E-value=0.0048  Score=48.73  Aligned_cols=55  Identities=22%  Similarity=0.172  Sum_probs=42.2

Q ss_pred             hHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       189 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      |--+=..|+|..|+..|.+|+.+-.++                 ...+.|++.|++++|+...|+.....||
T Consensus        76 G~~~Q~~g~~~~AI~aY~~A~~L~~dd-----------------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai  130 (157)
T PRK15363         76 GECCQAQKHWGEAIYAYGRAAQIKIDA-----------------PQAPWAAAECYLACDNVCYAIKALKAVV  130 (157)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCCC-----------------chHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            333335789999999999999764322                 2589999999999999888777666654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.58  E-value=0.0056  Score=45.05  Aligned_cols=75  Identities=15%  Similarity=0.096  Sum_probs=40.2

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhcccccc--------------ccchhHHHHHHH---------hhhhhhhHHHHH
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--------------QLFGKYRDMALA---------VKNPCHLNMAAC  242 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~--------------~~~~~~~~~~~~---------l~~~~~~N~A~c  242 (261)
                      -..|..+++.|+|..|+..|.+++.........              +..+.-...++.         ....++.+++.|
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~   85 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS   85 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence            355677777777777877777777643221000              000000001111         112346677777


Q ss_pred             HHHhhCHHHHHHHHHhhc
Q 024876          243 LLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       243 ~lKl~~~~~ai~~c~~aL  260 (261)
                      +.+++++.+|+...++++
T Consensus        86 ~~~~~~~~~A~~~~~~~~  103 (119)
T TIGR02795        86 LQELGDKEKAKATLQQVI  103 (119)
T ss_pred             HHHhCChHHHHHHHHHHH
Confidence            777777777777766654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.51  E-value=0.008  Score=45.69  Aligned_cols=61  Identities=28%  Similarity=0.455  Sum_probs=51.5

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..+...|..+++.|+|..|+..|++++.....                 ....+.|+|.|++++++|.+|+..+.+++
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~   78 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-----------------NSRYWLGLAACCQMLKEYEEAIDAYALAA   78 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667889999999999999999999876322                 13688899999999999999999988875

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.34  E-value=0.0086  Score=52.15  Aligned_cols=70  Identities=26%  Similarity=0.252  Sum_probs=53.3

Q ss_pred             hhhcccchhhHHhhhh-hhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876          180 GAADRRKMDGNALFKE-EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (261)
Q Consensus       180 ~~a~~~K~~Gn~~fk~-~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~  258 (261)
                      ..+..++..|.-+.+. +++..|+..|++|+.++....           .......|+.++|.++.++++|.+|+....+
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-----------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~  180 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-----------SPHSAAECLLKAADLYARLGRYEEAIEIYEE  180 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-----------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            4556677778877788 899999999999999986421           1234567999999999999999999998877


Q ss_pred             hc
Q 024876          259 VS  260 (261)
Q Consensus       259 aL  260 (261)
                      +.
T Consensus       181 ~~  182 (282)
T PF14938_consen  181 VA  182 (282)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.33  E-value=0.0051  Score=57.03  Aligned_cols=70  Identities=26%  Similarity=0.245  Sum_probs=59.2

Q ss_pred             hhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhh---CHHH
Q 024876          175 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK---RYEE  251 (261)
Q Consensus       175 ~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~---~~~~  251 (261)
                      .-+..+.++..|+.||..|-.+....|+..|.+++.+..                 ..+.||.|+|++++|.+   +...
T Consensus       367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~-----------------~~~~~l~nraa~lmkRkW~~d~~~  429 (758)
T KOG1310|consen  367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVP-----------------DAIYLLENRAAALMKRKWRGDSYL  429 (758)
T ss_pred             hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhcc-----------------chhHHHHhHHHHHHhhhccccHHH
Confidence            356678889999999999999999999999999998753                 34578999999999965   6778


Q ss_pred             HHHHHHhhcC
Q 024876          252 AIGQCSLVSK  261 (261)
Q Consensus       252 ai~~c~~aL~  261 (261)
                      |+.+|..||+
T Consensus       430 AlrDch~Alr  439 (758)
T KOG1310|consen  430 ALRDCHVALR  439 (758)
T ss_pred             HHHhHHhhcc
Confidence            8899988874

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.33  E-value=0.0089  Score=43.94  Aligned_cols=29  Identities=14%  Similarity=0.213  Sum_probs=24.6

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMG  213 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~  213 (261)
                      ....|..+++.++|..|+..|++++....
T Consensus        42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p   70 (119)
T TIGR02795        42 HYWLGEAYYAQGKYADAAKAFLAVVKKYP   70 (119)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence            34478899999999999999999997643

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=0.01  Score=56.21  Aligned_cols=69  Identities=19%  Similarity=0.244  Sum_probs=55.3

Q ss_pred             hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      -.-.-+...+..+|+.++|..|++.|...++++..+       .+    ...-.++.-|++.||+++.+.+.|+....+|
T Consensus       352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D-------~~----~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EA  420 (872)
T KOG4814|consen  352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD-------NY----SDRFAKIQRALQVCYLKLEQLDNAVEVYQEA  420 (872)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch-------hh----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            344456778899999999999999999999987643       11    1222688999999999999999999887765

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.10  E-value=0.0079  Score=35.11  Aligned_cols=26  Identities=19%  Similarity=0.129  Sum_probs=23.1

Q ss_pred             hhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          235 CHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       235 ~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +++|+|.+|.++|+|++|+..+.++|
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            47899999999999999999999976

>PRK11189 lipoprotein NlpI; Provisional

Probab=96.06  E-value=0.014  Score=51.11  Aligned_cols=28  Identities=29%  Similarity=0.120  Sum_probs=23.9

Q ss_pred             hhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          233 NPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       233 ~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ...++|++.++..+|+|++|+..+.++|
T Consensus       132 ~~a~~~lg~~l~~~g~~~eA~~~~~~al  159 (296)
T PRK11189        132 NYAYLNRGIALYYGGRYELAQDDLLAFY  159 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3578899999999999999999988876

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.00  E-value=0.011  Score=56.07  Aligned_cols=30  Identities=17%  Similarity=0.109  Sum_probs=26.1

Q ss_pred             hhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          232 KNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       232 ~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ....++|+|..|-.+|++++|+.+..+||.
T Consensus       387 ~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr  416 (966)
T KOG4626|consen  387 FAAAHNNLASIYKQQGNLDDAIMCYKEALR  416 (966)
T ss_pred             hhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence            356789999999999999999999998874

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.00  E-value=0.028  Score=38.05  Aligned_cols=59  Identities=31%  Similarity=0.379  Sum_probs=49.4

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +...|..++..|+|..|+..|.+++......                 ..++.+++.|+..+++++.|+..+..++
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~   61 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN-----------------ADAYYNLAAAYYKLGKYEEALEDYEKAL   61 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457888999999999999999999864321                 1578899999999999999999998875

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=95.98  E-value=0.013  Score=49.06  Aligned_cols=67  Identities=16%  Similarity=0.163  Sum_probs=54.2

Q ss_pred             hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      ..+..+...|..+++.|+|..|+..|++++......              ......++++|.|++++++|.+|+..+.++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~--------------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~   96 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS--------------PYAEQAQLDLAYAYYKSGDYAEAIAAADRF   96 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            334466788899999999999999999999865421              112346889999999999999999999987


Q ss_pred             c
Q 024876          260 S  260 (261)
Q Consensus       260 L  260 (261)
                      +
T Consensus        97 l   97 (235)
T TIGR03302        97 I   97 (235)
T ss_pred             H
Confidence            6

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.95  E-value=0.012  Score=33.39  Aligned_cols=28  Identities=21%  Similarity=0.258  Sum_probs=24.4

Q ss_pred             hhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          234 PCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ..+.++|.|++++++|++|+..+.++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999873

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.91  E-value=0.012  Score=51.20  Aligned_cols=64  Identities=25%  Similarity=0.323  Sum_probs=53.9

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+..+.+.|--+||.|+|..|.++|+.|+..-.+.                 ..+-.|+|+|+...++|..|+++.++.+
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-----------------pllAYniALaHy~~~qyasALk~iSEIi  205 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-----------------PLLAYNLALAHYSSRQYASALKHISEII  205 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhcCCC-----------------chhHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            34456778889999999999999999999875442                 3577899999999999999999998875


Q ss_pred             C
Q 024876          261 K  261 (261)
Q Consensus       261 ~  261 (261)
                      +
T Consensus       206 e  206 (459)
T KOG4340|consen  206 E  206 (459)
T ss_pred             H
Confidence            3

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=95.89  E-value=0.021  Score=48.68  Aligned_cols=62  Identities=10%  Similarity=-0.001  Sum_probs=51.2

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .-..|..+|++|+|..|+..|++.+......              .+.....+++|.+|+++++|.+|+....+.+
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s--------------~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi   96 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG--------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFI   96 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            5567788999999999999999999865432              2233567899999999999999999998876

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=95.68  E-value=0.037  Score=42.98  Aligned_cols=59  Identities=25%  Similarity=0.309  Sum_probs=46.4

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~  258 (261)
                      -..|+.+|..|+|..|...|+.++..-..              ..++..+.+++|.|++.+++|++|+.....
T Consensus        52 l~lA~~~~~~g~~~~A~~~l~~~~~~~~d--------------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   52 LQLAKAAYEQGDYDEAKAALEKALANAPD--------------PELKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCCC--------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            34678889999999999999999974311              244556788899999999999999887654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.62  E-value=0.032  Score=46.11  Aligned_cols=64  Identities=20%  Similarity=0.219  Sum_probs=49.7

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..+-..|..+|..|+|..|+..|++.+......              .+.....+.+|.++.+.++|..|+..+...|
T Consensus         6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s--------------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi   69 (203)
T PF13525_consen    6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNS--------------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFI   69 (203)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS--------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            445677899999999999999999999876542              2223577899999999999999999887654

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.59  E-value=0.087  Score=39.67  Aligned_cols=69  Identities=19%  Similarity=0.241  Sum_probs=51.3

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..|...+..|-|..|...|++|+..-....+.+-.+.     ..+-.-||--|+.++.+|++|++|+..+..+|
T Consensus        14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh-----~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL   82 (144)
T PF12968_consen   14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDH-----DGFDAFCHAGLSGALAGLGRYDECLQSADRAL   82 (144)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---H-----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhccc-----ccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            4567778899999999999999987654332221121     34556799999999999999999999999887

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.57  E-value=0.018  Score=34.15  Aligned_cols=28  Identities=25%  Similarity=0.192  Sum_probs=24.7

Q ss_pred             hhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          233 NPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       233 ~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +.+++|+|.+|..+|+|.+|+..+.+++
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            3689999999999999999999999886

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.51  E-value=0.0081  Score=57.96  Aligned_cols=75  Identities=32%  Similarity=0.479  Sum_probs=63.1

Q ss_pred             CchhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhh--CHH
Q 024876          173 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK--RYE  250 (261)
Q Consensus       173 l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~--~~~  250 (261)
                      .+...-+..+...+++||.+|.++.|..|.-.|..++.++..+             .-....+++|++.|++.++  +|.
T Consensus        44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~-------------~~~~a~~~~~~~s~~m~~~l~~~~  110 (748)
T KOG4151|consen   44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKD-------------HHVVATLRSNQASCYMQLGLGEYP  110 (748)
T ss_pred             cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheecccc-------------chhhhhHHHHHHHHHhhcCccchh
Confidence            3456678889999999999999999999999999999987643             2334689999999998755  899


Q ss_pred             HHHHHHHhhc
Q 024876          251 EAIGQCSLVS  260 (261)
Q Consensus       251 ~ai~~c~~aL  260 (261)
                      .++..|+-|+
T Consensus       111 ~~~~E~~la~  120 (748)
T KOG4151|consen  111 KAIPECELAL  120 (748)
T ss_pred             hhcCchhhhh
Confidence            9999998876

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=95.50  E-value=0.026  Score=54.50  Aligned_cols=25  Identities=8%  Similarity=0.161  Sum_probs=13.9

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHh
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAY  211 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~  211 (261)
                      ..|..++..|+|..|+..|.+++..
T Consensus       370 ~la~~~~~~g~~~eA~~~~~~al~~  394 (615)
T TIGR00990       370 KRASMNLELGDPDKAEEDFDKALKL  394 (615)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            4455555555555555555555544

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.46  E-value=0.032  Score=50.57  Aligned_cols=81  Identities=12%  Similarity=0.250  Sum_probs=56.8

Q ss_pred             hhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhcccccccc-chhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHH
Q 024876          176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-FGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG  254 (261)
Q Consensus       176 ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~-~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~  254 (261)
                      ++.++.|   -..+-.+|++++|..|+-+|+-||.++......+. .......+..+..-+..-++.|||++++.+.|+.
T Consensus       173 Dkwl~vA---L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALn  249 (569)
T PF15015_consen  173 DKWLQVA---LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALN  249 (569)
T ss_pred             HHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHH
Confidence            3444444   34677889999999999999999999865422111 1222334555556677788999999999998888


Q ss_pred             HHHhh
Q 024876          255 QCSLV  259 (261)
Q Consensus       255 ~c~~a  259 (261)
                      +.-+.
T Consensus       250 h~hrs  254 (569)
T PF15015_consen  250 HSHRS  254 (569)
T ss_pred             HHhhh
Confidence            76554

>PRK11189 lipoprotein NlpI; Provisional

Probab=95.45  E-value=0.035  Score=48.66  Aligned_cols=61  Identities=13%  Similarity=0.005  Sum_probs=52.0

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      -.-..|..+...|++..|+..|++++.+-...                 ...++|++.++..+++|++|+...++||+
T Consensus        66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-----------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~  126 (296)
T PRK11189         66 LHYERGVLYDSLGLRALARNDFSQALALRPDM-----------------ADAYNYLGIYLTQAGNFDAAYEAFDSVLE  126 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            35577888999999999999999999863321                 36899999999999999999999999874

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.41  E-value=0.018  Score=33.20  Aligned_cols=33  Identities=33%  Similarity=0.362  Sum_probs=26.7

Q ss_pred             HHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHH
Q 024876          204 QYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  253 (261)
Q Consensus       204 ~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai  253 (261)
                      +|+|||++-..                 ....|+|+|.++...|++++|+
T Consensus         1 ~y~kAie~~P~-----------------n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPN-----------------NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCC-----------------CHHHHHHHHHHHHHCcCHHhhc
Confidence            37888876432                 2469999999999999999986

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=95.19  E-value=0.055  Score=43.91  Aligned_cols=75  Identities=12%  Similarity=0.001  Sum_probs=42.0

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHHHHHH--------HhhhhhhhHHHHHHHHh
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYRDMAL--------AVKNPCHLNMAACLLKL  246 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~~~~~--------~l~~~~~~N~A~c~lKl  246 (261)
                      ...|.-++..|++..|+..|++++........           ....++-...+.        ......+.|++.|+.++
T Consensus        69 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  148 (234)
T TIGR02521        69 LALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA  148 (234)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc
Confidence            34566667777777777777777765432100           000000000000        11223567788888888


Q ss_pred             hCHHHHHHHHHhhc
Q 024876          247 KRYEEAIGQCSLVS  260 (261)
Q Consensus       247 ~~~~~ai~~c~~aL  260 (261)
                      +++.+|+..+.+++
T Consensus       149 g~~~~A~~~~~~~~  162 (234)
T TIGR02521       149 GDFDKAEKYLTRAL  162 (234)
T ss_pred             CCHHHHHHHHHHHH
Confidence            88888888877765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.11  E-value=0.041  Score=47.47  Aligned_cols=62  Identities=8%  Similarity=0.048  Sum_probs=46.4

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .--.|.-+|..|+|..|+..|++++......              ......+.+++.|+.++|+++.|+..+.+++
T Consensus       183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s--------------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi  244 (263)
T PRK10803        183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKS--------------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVI  244 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--------------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455777788888888888888888765432              1123467788999999999999999888775

>smart00028 TPR Tetratricopeptide repeats

Probab=94.97  E-value=0.037  Score=29.62  Aligned_cols=28  Identities=25%  Similarity=0.344  Sum_probs=25.0

Q ss_pred             hhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          234 PCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .++.++|.|++.++++..|+....++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~   29 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALE   29 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            4688999999999999999999988863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=94.87  E-value=0.067  Score=43.42  Aligned_cols=79  Identities=22%  Similarity=0.204  Sum_probs=50.1

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHHH---HH---HHhhhhhhhHHHHHHH
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYRD---MA---LAVKNPCHLNMAACLL  244 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~~---~~---~~l~~~~~~N~A~c~l  244 (261)
                      +......|..++..|+|..|+..|.+++........           .+..++-.+   +.   ..-....+.|++.+++
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            445556789999999999999999999876432100           000000000   01   1112245678888888


Q ss_pred             HhhCHHHHHHHHHhhc
Q 024876          245 KLKRYEEAIGQCSLVS  260 (261)
Q Consensus       245 Kl~~~~~ai~~c~~aL  260 (261)
                      .+|+|++|+..+.+++
T Consensus       111 ~~g~~~~A~~~~~~~~  126 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAI  126 (234)
T ss_pred             HcccHHHHHHHHHHHH
Confidence            8888888888887765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.78  E-value=0.035  Score=31.31  Aligned_cols=28  Identities=25%  Similarity=0.325  Sum_probs=23.8

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      ....|..+|+.|+|..|+..|++++.+.
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            3467899999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=94.65  E-value=0.079  Score=43.65  Aligned_cols=78  Identities=15%  Similarity=0.167  Sum_probs=55.5

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc----------c--cc--chhHHH------HHHHhhhhhhhHHHHHH
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM----------F--QL--FGKYRD------MALAVKNPCHLNMAACL  243 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~----------~--~~--~~~~~~------~~~~l~~~~~~N~A~c~  243 (261)
                      .....|.-+...|+|..|+..|.+|+++-..+..          .  +.  .++-..      +...-....++|+|.++
T Consensus        75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~  154 (198)
T PRK10370         75 QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDA  154 (198)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            3556688888999999999999999987643210          0  00  011111      12233456899999999


Q ss_pred             HHhhCHHHHHHHHHhhcC
Q 024876          244 LKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       244 lKl~~~~~ai~~c~~aL~  261 (261)
                      +++|+|++|+..+.++|+
T Consensus       155 ~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370        155 FMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHcCCHHHHHHHHHHHHh
Confidence            999999999999999874

>PRK12370 invasion protein regulator; Provisional

Probab=94.62  E-value=0.072  Score=50.89  Aligned_cols=56  Identities=13%  Similarity=-0.051  Sum_probs=36.4

Q ss_pred             hHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       189 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      |.-++..|+|..|+..|++|+.+-..                 ....+++++.+++.+|++++|+..+.++|+
T Consensus       345 g~~~~~~g~~~~A~~~~~~Al~l~P~-----------------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~  400 (553)
T PRK12370        345 GLINTIHSEYIVGSLLFKQANLLSPI-----------------SADIKYYYGWNLFMAGQLEEALQTINECLK  400 (553)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            44445555555566666655554221                 124678888888888888888888887763

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=94.60  E-value=0.049  Score=37.23  Aligned_cols=30  Identities=23%  Similarity=0.257  Sum_probs=26.2

Q ss_pred             hhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          232 KNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       232 ~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ...+++|+|.||..+++|++|+..+.+||+
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~   33 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALD   33 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            457899999999999999999999999873

...

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=94.58  E-value=0.078  Score=49.91  Aligned_cols=71  Identities=20%  Similarity=0.053  Sum_probs=56.3

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+..+.+.+..+-..++|..|...|+++++++.+.+...         +......+.|+|.+|+++|+|.+|.....+||
T Consensus       324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~---------~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai  394 (508)
T KOG1840|consen  324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED---------NVNLAKIYANLAELYLKMGKYKEAEELYKKAI  394 (508)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc---------chHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            444566667777889999999999999999987332211         23456789999999999999999999888876

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.49  E-value=0.032  Score=52.20  Aligned_cols=73  Identities=15%  Similarity=0.193  Sum_probs=52.0

Q ss_pred             hhHHhhhhhhHHHHHHHHHHHHHhhccccc-c-----cc--chhHHH---------HHHHhhhhhhhHHHHHHHHhhCHH
Q 024876          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFM-F-----QL--FGKYRD---------MALAVKNPCHLNMAACLLKLKRYE  250 (261)
Q Consensus       188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-~-----~~--~~~~~~---------~~~~l~~~~~~N~A~c~lKl~~~~  250 (261)
                      .|--++-.++|.+|+.+|+.||..-..+.. .     .+  .+...+         ++..-.+-..+||+.|++.+|.|+
T Consensus       436 LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~yk  515 (579)
T KOG1125|consen  436 LGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYK  515 (579)
T ss_pred             hHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHH
Confidence            588889999999999999999976443210 0     00  001111         122333456889999999999999


Q ss_pred             HHHHHHHhhc
Q 024876          251 EAIGQCSLVS  260 (261)
Q Consensus       251 ~ai~~c~~aL  260 (261)
                      +|+.+.-.||
T Consensus       516 EA~~hlL~AL  525 (579)
T KOG1125|consen  516 EAVKHLLEAL  525 (579)
T ss_pred             HHHHHHHHHH
Confidence            9999998887

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.46  E-value=0.04  Score=35.30  Aligned_cols=27  Identities=30%  Similarity=0.455  Sum_probs=23.7

Q ss_pred             hhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          235 CHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       235 ~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      |+..+|..+.|+++|..|...|+.+|+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~   29 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLE   29 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            677899999999999999999999874

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.38  E-value=0.045  Score=31.84  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=22.2

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHh
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAY  211 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~  211 (261)
                      ...|+-+++.|+|.+|+..|+++|.+
T Consensus         3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    3 NNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45789999999999999999998855

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.33  E-value=0.034  Score=31.07  Aligned_cols=26  Identities=31%  Similarity=0.462  Sum_probs=23.5

Q ss_pred             hhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          235 CHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       235 ~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +++++|.|+.++|++++|+....+++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~   27 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLI   27 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            57899999999999999999988775

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.32  E-value=0.15  Score=36.61  Aligned_cols=62  Identities=16%  Similarity=0.138  Sum_probs=46.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          192 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       192 ~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ..+.++|..|+....+..++........   .     .......++|+|.++..+|++++|+..+.+|++
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~---~-----~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~   69 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSS---S-----NSGLAYALLNLAELHRRFGHYEEALQALEEAIR   69 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccch---h-----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3578999999999999888764321100   0     122344689999999999999999999999863

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.32  E-value=0.17  Score=40.96  Aligned_cols=63  Identities=17%  Similarity=0.091  Sum_probs=51.5

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      ..+.+.|+.+++.|++..|++.|.++..++..              ...++.+++|+..+.+-+++|..+..+.++|
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~--------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS--------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC--------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            44667899999999999999999999987643              2445678888888888888998888877765

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.31  E-value=0.047  Score=30.96  Aligned_cols=28  Identities=32%  Similarity=0.364  Sum_probs=23.9

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      .-..|..++..++|..|+..|++|+++-
T Consensus         4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    4 YYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            4467999999999999999999999863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=94.22  E-value=0.15  Score=40.43  Aligned_cols=67  Identities=12%  Similarity=-0.142  Sum_probs=48.1

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .....|.-++..|++..|+..|.+|+..-...          .........++.|++..++++|++..|+..+.+++
T Consensus        74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~----------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~  140 (168)
T CHL00033         74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFL----------PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA  140 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence            45667888899999999999999999763211          01122334556666666669999999988888764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=94.19  E-value=0.1  Score=53.21  Aligned_cols=78  Identities=10%  Similarity=0.024  Sum_probs=51.8

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHHH------HHHHhhhhhhhHHHHHHHHh
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYRD------MALAVKNPCHLNMAACLLKL  246 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~~------~~~~l~~~~~~N~A~c~lKl  246 (261)
                      .....|..+.+.|++..|+..|++++..-.....           ....++-..      ++..-...++.|+|.|+.++
T Consensus       611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l  690 (987)
T PRK09782        611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL  690 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            3556788888888888888888888876533210           000011000      11122345689999999999


Q ss_pred             hCHHHHHHHHHhhcC
Q 024876          247 KRYEEAIGQCSLVSK  261 (261)
Q Consensus       247 ~~~~~ai~~c~~aL~  261 (261)
                      |++++|+..+.+||+
T Consensus       691 Gd~~eA~~~l~~Al~  705 (987)
T PRK09782        691 DDMAATQHYARLVID  705 (987)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999998864

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=94.08  E-value=0.12  Score=43.14  Aligned_cols=58  Identities=14%  Similarity=0.170  Sum_probs=47.5

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~  258 (261)
                      ..|..+|++|+|..|+..|++++......              ......+.+++.++.++|++.+|+.....
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~--------------~~~~~a~~~l~~~~~~lg~~~~A~~~~~~  228 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDT--------------PATEEALARLVEAYLKLGLKDLAQDAAAV  228 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCC--------------cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            56788899999999999999999876532              12246888999999999999999986544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.08  E-value=0.066  Score=50.14  Aligned_cols=67  Identities=21%  Similarity=0.235  Sum_probs=51.1

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+++.|...|+.+.|..|...+++++..+.....     +   .  ....+..+|++..+-|++.|.+||...++||
T Consensus       416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-----e---~--~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL  482 (611)
T KOG1173|consen  416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-----E---K--IFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL  482 (611)
T ss_pred             hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-----c---c--cchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            4678888889999999999999999854432110     0   0  0345788999999999999999999988887

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=94.05  E-value=0.092  Score=44.06  Aligned_cols=65  Identities=26%  Similarity=0.252  Sum_probs=51.7

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      +..+.+-|.-+..+|+|..|...|.+|+.-=.+.               .....+-|+..|.+|.|+++.|..+..++|+
T Consensus       103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~---------------~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~  167 (250)
T COG3063         103 GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYG---------------EPSDTLENLGLCALKAGQFDQAEEYLKRALE  167 (250)
T ss_pred             cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCC---------------CcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence            3446677888889999999999999999642221               1135788999999999999999999998874

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=93.97  E-value=0.11  Score=44.24  Aligned_cols=59  Identities=19%  Similarity=0.203  Sum_probs=41.0

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ++..|..+|..|+|..|+..++++...-..++                 ..++=+++||.++|+++.|.....++|
T Consensus       103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~-----------------~~~~~lgaaldq~Gr~~~Ar~ay~qAl  161 (257)
T COG5010         103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW-----------------EAWNLLGAALDQLGRFDEARRAYRQAL  161 (257)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhccCCCCh-----------------hhhhHHHHHHHHccChhHHHHHHHHHH
Confidence            34489999999999999999999998654332                 244555555666666555555555554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=93.70  E-value=0.084  Score=29.77  Aligned_cols=28  Identities=21%  Similarity=0.227  Sum_probs=25.0

Q ss_pred             hhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          234 PCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .++.+++.|+.+++++++|+....++++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4688999999999999999999988863

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=93.58  E-value=0.21  Score=39.83  Aligned_cols=49  Identities=14%  Similarity=0.042  Sum_probs=38.1

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhC
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR  248 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~  248 (261)
                      ......|..+++.|+|..|+..|.+++......                 ...+.+++.|+..+++
T Consensus        73 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~lg~~~~~~g~  121 (172)
T PRK02603         73 YILYNMGIIYASNGEHDKALEYYHQALELNPKQ-----------------PSALNNIAVIYHKRGE  121 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----------------HHHHHHHHHHHHHcCC
Confidence            345677899999999999999999999864321                 2456788888888776

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.56  E-value=0.32  Score=33.75  Aligned_cols=64  Identities=14%  Similarity=0.233  Sum_probs=50.0

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~  258 (261)
                      .+...-++|-.+|.+.+...|++++++++.-....              ..+-.++.=++.+|.-.|+|.+++..+..
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~--------------~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDR--------------EDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556688999999999999999999999865431              12345666678889999999999987654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=93.53  E-value=0.073  Score=47.25  Aligned_cols=82  Identities=16%  Similarity=0.200  Sum_probs=55.1

Q ss_pred             hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccch---hHHHHHHHh---hhhhhhHHHHH
Q 024876          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFG---KYRDMALAV---KNPCHLNMAAC  242 (261)
Q Consensus       180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~---~~~~~~~~l---~~~~~~N~A~c  242 (261)
                      ..+.+.-+.|+.+|.++.|..|+..|-.|+..-...+.           ...+.   .+...+.++   -.....-++.+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v  115 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence            34566778999999999999999999888865322110           00000   011222222   23456778889


Q ss_pred             HHHhhCHHHHHHHHHhhcC
Q 024876          243 LLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       243 ~lKl~~~~~ai~~c~~aL~  261 (261)
                      +||+|++++|..+.+.||+
T Consensus       116 llK~Gele~A~~DF~~vl~  134 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQ  134 (504)
T ss_pred             hhhcccHHHHHHHHHHHHh
Confidence            9999999999999988874

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=93.44  E-value=0.16  Score=46.47  Aligned_cols=57  Identities=18%  Similarity=0.289  Sum_probs=46.2

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~  258 (261)
                      +-.++.-+.++++|+.|+...++|+.+....                 ..++..||.||+++|+|+.|+...+.
T Consensus       237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~-----------------f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  237 LNLQAEFLLSKKKYELALEIAKKAVELSPSE-----------------FETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCchh-----------------HHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            4446777788899999999999998875432                 35888999999999999999987764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.38  E-value=0.08  Score=50.40  Aligned_cols=65  Identities=22%  Similarity=0.149  Sum_probs=53.3

Q ss_pred             hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      +-++..-..||.+=.+|++.+|+..|+.++++-.                 -.+-.|.|+|+|+...++...|...|.+|
T Consensus       114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p-----------------~fida~inla~al~~~~~~~~a~~~~~~a  176 (966)
T KOG4626|consen  114 QGAEAYSNLANILKERGQLQDALALYRAAIELKP-----------------KFIDAYINLAAALVTQGDLELAVQCFFEA  176 (966)
T ss_pred             hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc-----------------hhhHHHhhHHHHHHhcCCCcccHHHHHHH
Confidence            3445566678888889999999999999997622                 23468999999999999999999999988


Q ss_pred             cC
Q 024876          260 SK  261 (261)
Q Consensus       260 L~  261 (261)
                      |.
T Consensus       177 lq  178 (966)
T KOG4626|consen  177 LQ  178 (966)
T ss_pred             Hh
Confidence            73

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=93.29  E-value=0.3  Score=36.88  Aligned_cols=60  Identities=27%  Similarity=0.205  Sum_probs=42.0

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +.+..+-..|+..+|+..|++++..--.       +       ..+..++.+++.++..+|++++|+..-++++
T Consensus         6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~-------~-------~~~~~a~i~lastlr~LG~~deA~~~L~~~~   65 (120)
T PF12688_consen    6 ELAWAHDSLGREEEAIPLYRRALAAGLS-------G-------ADRRRALIQLASTLRNLGRYDEALALLEEAL   65 (120)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCC-------c-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4556667789999999999999974211       1       1223467778888888888888877666543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=93.25  E-value=0.63  Score=35.83  Aligned_cols=73  Identities=23%  Similarity=0.227  Sum_probs=55.0

Q ss_pred             hhHHhhhhhhHHHHHHHHHHHHHhhcccccc-----ccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-----QLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~-----~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .|...-..++...++..|.+++.+..-.+..     ......+..++...+.++..++..++..++|..|+..|..+|
T Consensus        12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l   89 (146)
T PF03704_consen   12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL   89 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            3445556678889999999999887544322     223456778999999999999999999999999999999876

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=93.15  E-value=0.21  Score=39.77  Aligned_cols=60  Identities=15%  Similarity=0.216  Sum_probs=40.6

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~  258 (261)
                      ...+-..|-.+|.+|+|..|...|+-...+ +..                ...-++.||+|+.-+++|++|+.....
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-d~~----------------n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~   96 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIY-DFY----------------NPDYTMGLAAVCQLKKQFQKACDLYAV   96 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcC----------------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566788899999999999999766543 221                012456777777777777777765443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.15  E-value=0.15  Score=44.21  Aligned_cols=85  Identities=15%  Similarity=0.084  Sum_probs=65.9

Q ss_pred             CCchhhHhhhhcccchhhHHhhhhh-hHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHH
Q 024876          172 DMTVEERIGAADRRKMDGNALFKEE-KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYE  250 (261)
Q Consensus       172 ~l~~ee~~~~a~~~K~~Gn~~fk~~-~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~  250 (261)
                      .++++.....+..+-+.|..+++++ +|..|....++|+++++..   ...+.......+++..++.-+|.||+..+.++
T Consensus        25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~---~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~  101 (278)
T PF08631_consen   25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP---GKMDKLSPDGSELRLSILRLLANAYLEWDTYE  101 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh---hhccccCCcHHHHHHHHHHHHHHHHHcCCChH
Confidence            4567777888999999999999999 9999999999999998642   00112223457889999999999999999876


Q ss_pred             HHHHHHHhhc
Q 024876          251 EAIGQCSLVS  260 (261)
Q Consensus       251 ~ai~~c~~aL  260 (261)
                      .... |..+|
T Consensus       102 ~~~k-a~~~l  110 (278)
T PF08631_consen  102 SVEK-ALNAL  110 (278)
T ss_pred             HHHH-HHHHH
Confidence            5544 55543

It is also involved in sporulation [].

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=92.94  E-value=0.22  Score=46.74  Aligned_cols=60  Identities=23%  Similarity=0.224  Sum_probs=51.3

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      -.-..|-.+=|.++|..|+..|++||.....+                 ...|.-+|.||..+|+++.|+.+..+||
T Consensus       457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~-----------------~~~~asig~iy~llgnld~Aid~fhKaL  516 (611)
T KOG1173|consen  457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD-----------------ASTHASIGYIYHLLGNLDKAIDHFHKAL  516 (611)
T ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc-----------------hhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            34566777789999999999999999875432                 3688899999999999999999999987

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=92.71  E-value=0.19  Score=49.40  Aligned_cols=61  Identities=15%  Similarity=0.154  Sum_probs=43.8

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ......|+.++++|+|..|+..|++++..-...                 ..++..++.+++++|+|++|+....+++
T Consensus        23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~   83 (899)
T TIGR02917        23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPND-----------------AEARFLLGKIYLALGDYAAAEKELRKAL   83 (899)
T ss_pred             HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345677889999999999999999998753321                 1356667777777777777777666654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=92.70  E-value=0.22  Score=51.84  Aligned_cols=58  Identities=21%  Similarity=0.239  Sum_probs=49.0

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ..|..+++.|++..|+..|++++..-...                 ...+.+++.+++++|+|++|+..+.+||+
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~-----------------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~  413 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDNTD-----------------SYAVLGLGDVAMARKDYAAAERYYQQALR  413 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45778889999999999999999863321                 24788999999999999999999999873

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=92.62  E-value=0.29  Score=40.32  Aligned_cols=64  Identities=6%  Similarity=-0.062  Sum_probs=36.3

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHH-HHhhC--HHHHHHHHHhhc
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACL-LKLKR--YEEAIGQCSLVS  260 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~-lKl~~--~~~ai~~c~~aL  260 (261)
                      .....++..|.+-.+...|..|+..+....          .+..-...+++|+|.|+ ...|+  +.+|+...+++|
T Consensus        71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al----------~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al  137 (198)
T PRK10370         71 QNSEQWALLGEYYLWRNDYDNALLAYRQAL----------QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKAL  137 (198)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            445556666666666666666666654321          11222345667777764 55565  367777666665

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=92.30  E-value=0.3  Score=47.93  Aligned_cols=59  Identities=12%  Similarity=-0.021  Sum_probs=36.2

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .-..++.+++.+++.+|+..+++++..-.+                 ....++++|.|+.++|+|++|+...+++|
T Consensus       123 ~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-----------------~~~~~~~~a~~l~~~g~~~~A~~~y~~~~  181 (694)
T PRK15179        123 FILMLRGVKRQQGIEAGRAEIELYFSGGSS-----------------SAREILLEAKSWDEIGQSEQADACFERLS  181 (694)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhhcCCC-----------------CHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            344456666666666666666666654322                 23456667777777777777777666665

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.11  E-value=0.39  Score=33.12  Aligned_cols=59  Identities=17%  Similarity=-0.030  Sum_probs=38.8

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHH
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA  240 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A  240 (261)
                      .+..+-.++.+.=+.|+|..|+.+|..|++++-..... ..+..+...-..++.=|+++|
T Consensus         5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~-e~~~~~k~~ir~K~~eYl~RA   63 (75)
T cd02677           5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQG-DSSPERREAVKRKIAEYLKRA   63 (75)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHH
Confidence            34444455666667899999999999999998643211 233445555555666676666

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=92.00  E-value=0.15  Score=46.32  Aligned_cols=74  Identities=19%  Similarity=0.298  Sum_probs=57.4

Q ss_pred             hhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHH
Q 024876          176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ  255 (261)
Q Consensus       176 ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~  255 (261)
                      ..++.+....-..||.+|--|+|..|+...+.-|.+...   +..        +.-.-..|+|++.||+=+++|..|+.+
T Consensus       189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e---fGD--------rAaeRRA~sNlgN~hiflg~fe~A~eh  257 (639)
T KOG1130|consen  189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE---FGD--------RAAERRAHSNLGNCHIFLGNFELAIEH  257 (639)
T ss_pred             hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH---hhh--------HHHHHHhhcccchhhhhhcccHhHHHH
Confidence            345666777888899999999999999999888876432   111        112235899999999999999999999


Q ss_pred             HHhhc
Q 024876          256 CSLVS  260 (261)
Q Consensus       256 c~~aL  260 (261)
                      ....|
T Consensus       258 YK~tl  262 (639)
T KOG1130|consen  258 YKLTL  262 (639)
T ss_pred             HHHHH
Confidence            87765

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=91.98  E-value=0.35  Score=47.59  Aligned_cols=58  Identities=17%  Similarity=0.160  Sum_probs=44.9

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ..|.-++..|++..|+..|++++..-..                 ...++.|++.++.+.|++++|+....++|+
T Consensus       842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  899 (899)
T TIGR02917       842 TLGWLLVEKGEADRALPLLRKAVNIAPE-----------------AAAIRYHLALALLATGRKAEARKELDKLLN  899 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence            3466667777788888888877765321                 136888999999999999999999998875

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=91.93  E-value=0.65  Score=39.96  Aligned_cols=76  Identities=20%  Similarity=0.162  Sum_probs=51.1

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccc---------c--ccchhHHHHHHHh------hhhhhhHHHHHHHHhh
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM---------F--QLFGKYRDMALAV------KNPCHLNMAACLLKLK  247 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~---------~--~~~~~~~~~~~~l------~~~~~~N~A~c~lKl~  247 (261)
                      +...|+-+.+.|++..|++.|++|++....+..         .  +..++-++.+..+      ...++..+|.+++.+|
T Consensus       149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg  228 (280)
T PF13429_consen  149 WLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLG  228 (280)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc
Confidence            445677778899999999999999998754311         0  1111111122222      2356789999999999


Q ss_pred             CHHHHHHHHHhhc
Q 024876          248 RYEEAIGQCSLVS  260 (261)
Q Consensus       248 ~~~~ai~~c~~aL  260 (261)
                      ++++|+....+++
T Consensus       229 ~~~~Al~~~~~~~  241 (280)
T PF13429_consen  229 RYEEALEYLEKAL  241 (280)
T ss_dssp             -HHHHHHHHHHHH
T ss_pred             ccccccccccccc
Confidence            9999999988875

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=91.90  E-value=0.26  Score=49.06  Aligned_cols=67  Identities=18%  Similarity=0.232  Sum_probs=45.4

Q ss_pred             hhhhHHHHHHHHHHHHHhhccc-c-------------ccccchhHHHHHHHhhh---hhhhHHHHHHHHhhCHHHHHHHH
Q 024876          194 KEEKLEEAMQQYEMAIAYMGDD-F-------------MFQLFGKYRDMALAVKN---PCHLNMAACLLKLKRYEEAIGQC  256 (261)
Q Consensus       194 k~~~~~~A~~~Y~kal~~l~~~-~-------------~~~~~~~~~~~~~~l~~---~~~~N~A~c~lKl~~~~~ai~~c  256 (261)
                      .++.+.+|+.+|.++|+.-... +             .+...-+....+++-..   ..++|+|.||+-+++|..||...
T Consensus       624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY  703 (1018)
T KOG2002|consen  624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY  703 (1018)
T ss_pred             HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence            3677889999999998865321 1             01111122333333333   67899999999999999999988


Q ss_pred             Hhhc
Q 024876          257 SLVS  260 (261)
Q Consensus       257 ~~aL  260 (261)
                      ..+|
T Consensus       704 e~~l  707 (1018)
T KOG2002|consen  704 ENCL  707 (1018)
T ss_pred             HHHH
Confidence            7765

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=91.80  E-value=0.83  Score=34.59  Aligned_cols=71  Identities=13%  Similarity=0.032  Sum_probs=54.2

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~  258 (261)
                      --.|+..|+.+++-+|+-.|+.|+.+.+....  ..+.+.+++..+++...-|||.-+-.+|+-+-.+++-.-
T Consensus         5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~--~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLql   75 (140)
T PF10952_consen    5 TLLADQAFKEADPLRSILHYQQALSLSEEIDE--SNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQL   75 (140)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc--cccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHH
Confidence            34688999999999999999999998765421  123344566777778888999999999998777776543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=91.76  E-value=0.36  Score=47.19  Aligned_cols=25  Identities=20%  Similarity=0.313  Sum_probs=15.1

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHh
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAY  211 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~  211 (261)
                      ..|..+++.|+|..|+..|++++..
T Consensus       289 ~lg~~l~~~g~~~eA~~~l~~al~l  313 (656)
T PRK15174        289 LYADALIRTGQNEKAIPLLQQSLAT  313 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3455566666666666666666654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=91.61  E-value=0.5  Score=42.39  Aligned_cols=25  Identities=12%  Similarity=0.190  Sum_probs=17.4

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHH
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIA  210 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~  210 (261)
                      ...|+-++..|+|..|+..|++++.
T Consensus        73 ~~la~~~~~~g~~~~A~~~~~~~l~   97 (389)
T PRK11788         73 LALGNLFRRRGEVDRAIRIHQNLLS   97 (389)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHhc
Confidence            4456677777777777777777665

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.56  E-value=0.37  Score=33.40  Aligned_cols=59  Identities=15%  Similarity=0.081  Sum_probs=37.8

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHH
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAAC  242 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c  242 (261)
                      ..+-.++..+=+.|+|..|+.+|..||.+|....... .+.....+-.-++.-|.++|--
T Consensus         7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e-~d~~~k~~~r~ki~eY~~RAE~   65 (77)
T cd02683           7 KEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGT-KDEAKKKNLRQKISEYMDRAEA   65 (77)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHHHH
Confidence            3444556777789999999999999999986432111 2233344444555566666643

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=91.52  E-value=0.36  Score=50.33  Aligned_cols=58  Identities=12%  Similarity=0.061  Sum_probs=49.5

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ..|..++..|+|..|+..|++++..-..+                 ..++.+++.++++++++++|+....++|+
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~-----------------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~  331 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKD-----------------SEALGALGQAYSQQGDRARAVAQFEKALA  331 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45888899999999999999999863321                 25788999999999999999999998873

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=91.51  E-value=0.63  Score=36.21  Aligned_cols=62  Identities=21%  Similarity=0.209  Sum_probs=47.9

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      .+-..|-..+++|+|..|+..++....-...    +          ...-...++++-+|++.++|.+|+.....=
T Consensus        12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~----g----------~ya~qAqL~l~yayy~~~~y~~A~a~~~rF   73 (142)
T PF13512_consen   12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPF----G----------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRF   73 (142)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----C----------cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            4456678889999999999888877765432    2          222357889999999999999999987654

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.44  E-value=0.39  Score=33.06  Aligned_cols=61  Identities=16%  Similarity=0.087  Sum_probs=37.8

Q ss_pred             hhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHH
Q 024876          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA  240 (261)
Q Consensus       179 ~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A  240 (261)
                      +..+..+-.+|...=+.|+|..|+.+|..||.+|....-.+ .+......-.-++.-|+++|
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e-~~~~~k~~lr~k~~eyl~RA   63 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYE-TDAQRKEALRQKVLQYVSRA   63 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHH
Confidence            34455555666777789999999999999999985432112 22233333334444555553

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=91.42  E-value=0.49  Score=40.37  Aligned_cols=63  Identities=11%  Similarity=0.111  Sum_probs=51.6

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +.|.++|+.|+|..|++.|+.+...+...           .=..+...++.++..|+.++++.+..+..|-+.|
T Consensus       183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~e-----------gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  183 EMAEEYFRLGDYDKALKLLEPAASSYRRE-----------GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhC-----------CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            67999999999999999999996554321           1135556789999999999999999999997765

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=91.39  E-value=0.5  Score=41.88  Aligned_cols=73  Identities=15%  Similarity=0.067  Sum_probs=40.5

Q ss_pred             hhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHHHHH----------HHhhhhhhhHHHHHHHHh
Q 024876          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYRDMA----------LAVKNPCHLNMAACLLKL  246 (261)
Q Consensus       188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~~~~----------~~l~~~~~~N~A~c~lKl  246 (261)
                      .|..+...|+|.+|...|++++..-..+..           .+..++-...+          ..+...++.++|.|++.+
T Consensus       120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~  199 (355)
T cd05804         120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER  199 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence            445666777888888888887765432100           00000000000          011223455788888888


Q ss_pred             hCHHHHHHHHHhhc
Q 024876          247 KRYEEAIGQCSLVS  260 (261)
Q Consensus       247 ~~~~~ai~~c~~aL  260 (261)
                      |++++|+....+++
T Consensus       200 G~~~~A~~~~~~~~  213 (355)
T cd05804         200 GDYEAALAIYDTHI  213 (355)
T ss_pred             CCHHHHHHHHHHHh
Confidence            88888887776653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=91.34  E-value=0.54  Score=40.58  Aligned_cols=59  Identities=10%  Similarity=0.088  Sum_probs=46.3

Q ss_pred             hhHHh-hhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          188 DGNAL-FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       188 ~Gn~~-fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+-.+ ++.|+|..|+..|++.+......              .+....+.-++.+|+..++|++|+.....++
T Consensus       148 ~A~~l~~~~~~y~~Ai~af~~fl~~yP~s--------------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv  207 (263)
T PRK10803        148 AAIALVQDKSRQDDAIVAFQNFVKKYPDS--------------TYQPNANYWLGQLNYNKGKKDDAAYYFASVV  207 (263)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHCcCC--------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444 66799999999999999876432              1222467889999999999999999998876

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.14  E-value=0.31  Score=43.19  Aligned_cols=59  Identities=12%  Similarity=0.127  Sum_probs=43.7

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +--.|..+|-.++-..|++.|+|.|..-..+                 -.+++|+++|++--++|+-++.....||
T Consensus       327 iAcia~~yfY~~~PE~AlryYRRiLqmG~~s-----------------peLf~NigLCC~yaqQ~D~~L~sf~RAl  385 (478)
T KOG1129|consen  327 IACIAVGYFYDNNPEMALRYYRRILQMGAQS-----------------PELFCNIGLCCLYAQQIDLVLPSFQRAL  385 (478)
T ss_pred             eeeeeeccccCCChHHHHHHHHHHHHhcCCC-----------------hHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence            3344666777777777888887777653221                 2589999999999999998888777765

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=91.13  E-value=0.17  Score=33.55  Aligned_cols=29  Identities=21%  Similarity=0.242  Sum_probs=26.1

Q ss_pred             hhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          233 NPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       233 ~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ...+.++|.|++.+++|.+|+..++++|+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~   31 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE   31 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35789999999999999999999999873

...

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.05  E-value=0.42  Score=33.01  Aligned_cols=60  Identities=18%  Similarity=-0.035  Sum_probs=36.3

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccc-cchhHHHHHHHhhhhhhhHHHHH
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ-LFGKYRDMALAVKNPCHLNMAAC  242 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~-~~~~~~~~~~~l~~~~~~N~A~c  242 (261)
                      +..+-.++.++=+.|+|.+|+..|..|+.+|-.-...+ .++...+.+ ..++.=|+++|-.
T Consensus         6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~i-r~K~~eYl~RAE~   66 (76)
T cd02681           6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTI-QEKSNEYLDRAQA   66 (76)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH-HHHHHHHHHHHHH
Confidence            34444556666689999999999999999985421111 112222222 4455556666654

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=90.96  E-value=0.47  Score=48.52  Aligned_cols=22  Identities=9%  Similarity=0.101  Sum_probs=17.9

Q ss_pred             HhhhhhhHHHHHHHHHHHHHhh
Q 024876          191 ALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       191 ~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      .++..|+|..|+..|++|+..-
T Consensus       585 ~l~~~Gr~~eAl~~~~~AL~l~  606 (987)
T PRK09782        585 QRYIPGQPELALNDLTRSLNIA  606 (987)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC
Confidence            3345599999999999999764

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=90.77  E-value=0.49  Score=31.79  Aligned_cols=34  Identities=24%  Similarity=0.210  Sum_probs=25.7

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccc
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDD  215 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~  215 (261)
                      +..+-..|..+=+.|+|..|+..|..|+.+|...
T Consensus         5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~   38 (69)
T PF04212_consen    5 AIELIKKAVEADEAGNYEEALELYKEAIEYLMQA   38 (69)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            3344455555567899999999999999998643

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.30  E-value=0.26  Score=45.32  Aligned_cols=28  Identities=25%  Similarity=0.363  Sum_probs=25.1

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHh
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAY  211 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~  211 (261)
                      .+-.+||..|..|+|..|+..|+.||+-
T Consensus       492 a~~nkgn~~f~ngd~dka~~~ykeal~n  519 (840)
T KOG2003|consen  492 ALTNKGNIAFANGDLDKAAEFYKEALNN  519 (840)
T ss_pred             HhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence            4667899999999999999999999864

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.09  E-value=0.72  Score=39.62  Aligned_cols=58  Identities=17%  Similarity=0.208  Sum_probs=44.1

Q ss_pred             hHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       189 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      |..+|.+|+|..|...|.++++-.....-              ..-.++-++.|+..+++.++|+....+++
T Consensus       185 Ge~~y~qg~y~~Aa~~f~~~~k~~P~s~K--------------ApdallKlg~~~~~l~~~d~A~atl~qv~  242 (262)
T COG1729         185 GESLYAQGDYEDAAYIFARVVKDYPKSPK--------------APDALLKLGVSLGRLGNTDEACATLQQVI  242 (262)
T ss_pred             HHHHHhcccchHHHHHHHHHHHhCCCCCC--------------ChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            77778888888888888888875443210              01367789999999999999999888875

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=90.07  E-value=0.78  Score=41.14  Aligned_cols=84  Identities=8%  Similarity=0.005  Sum_probs=52.9

Q ss_pred             HhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHHHHHHH----------hhhhhh
Q 024876          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYRDMALA----------VKNPCH  236 (261)
Q Consensus       178 ~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~~~~~~----------l~~~~~  236 (261)
                      ....+...-..|..+...|++..|+..|++++..-.....           .+..++-...++.          .....+
T Consensus        31 ~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~  110 (389)
T PRK11788         31 ESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL  110 (389)
T ss_pred             hhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            3445555556788888999999999999999986432110           0000000001111          122467


Q ss_pred             hHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          237 LNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       237 ~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .+++.++.+.|+|+.|+....++++
T Consensus       111 ~~La~~~~~~g~~~~A~~~~~~~l~  135 (389)
T PRK11788        111 QELGQDYLKAGLLDRAEELFLQLVD  135 (389)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHc
Confidence            7888888888999998888877753

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=89.65  E-value=0.77  Score=40.66  Aligned_cols=29  Identities=10%  Similarity=-0.009  Sum_probs=24.1

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMG  213 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~  213 (261)
                      ....|.-++..|++.+|+..|.+++....
T Consensus       151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         151 VHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            34567888999999999999999998653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=89.50  E-value=0.69  Score=40.16  Aligned_cols=70  Identities=21%  Similarity=0.069  Sum_probs=47.4

Q ss_pred             hhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (261)
Q Consensus       179 ~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~  258 (261)
                      -..+......||.+-..++|.+|...|.+|..+.....      .     ......+|.+.+.|+.+. ++.+|+....+
T Consensus        32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~------~-----~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~   99 (282)
T PF14938_consen   32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG------D-----KFEAAKAYEEAANCYKKG-DPDEAIECYEK   99 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHHT-THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC------C-----HHHHHHHHHHHHHHHHhh-CHHHHHHHHHH
Confidence            34455666667766678888899999999887754310      0     122346777888887776 88888888777


Q ss_pred             hc
Q 024876          259 VS  260 (261)
Q Consensus       259 aL  260 (261)
                      |+
T Consensus       100 A~  101 (282)
T PF14938_consen  100 AI  101 (282)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=89.44  E-value=1  Score=40.24  Aligned_cols=59  Identities=20%  Similarity=0.105  Sum_probs=50.4

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      -+++-.||+.++|..|..-...|+.+                 ....++.|+.++++...|+...+|..+|..||+
T Consensus       135 ~NRA~AYlk~K~FA~AE~DC~~AiaL-----------------d~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~  193 (536)
T KOG4648|consen  135 INRALAYLKQKSFAQAEEDCEAAIAL-----------------DKLYVKAYSRRMQARESLGNNMEAKKDCETVLA  193 (536)
T ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHh-----------------hHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHh
Confidence            34567789999999888888888865                 456688999999999999999999999999974

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=89.28  E-value=0.94  Score=45.25  Aligned_cols=62  Identities=15%  Similarity=0.123  Sum_probs=51.1

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      --.+|.+|-+|+|..+...+.-|+.....              ..++.-.+.++|.||..+|+|++|..+.-++++
T Consensus       274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~--------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k  335 (1018)
T KOG2002|consen  274 NHLANHFYFKKDYERVWHLAEHAIKNTEN--------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK  335 (1018)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhhhh--------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence            33479999999999999999999976422              345567899999999999999999999888763

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=89.16  E-value=0.68  Score=45.53  Aligned_cols=62  Identities=10%  Similarity=-0.079  Sum_probs=50.3

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ..+...|-.+-+.|+|.+|+..|++++... .+                ....+.|+|.++.++|+.++|...+.+||+
T Consensus       155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~----------------~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        155 REILLEAKSWDEIGQSEQADACFERLSRQH-PE----------------FENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CC----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345566777788999999999999999732 11                125899999999999999999999999873

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=88.53  E-value=0.59  Score=28.22  Aligned_cols=27  Identities=19%  Similarity=0.094  Sum_probs=24.5

Q ss_pred             hhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          235 CHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       235 ~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .+.++|.+|..+|++++|+....++|+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            578899999999999999999998874

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=88.42  E-value=0.84  Score=44.66  Aligned_cols=26  Identities=19%  Similarity=0.056  Sum_probs=14.1

Q ss_pred             hhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          235 CHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       235 ~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ++.|++.+++++++|++|+..+.++|
T Consensus       286 a~~~lg~~l~~~g~~~eA~~~l~~al  311 (656)
T PRK15174        286 IVTLYADALIRTGQNEKAIPLLQQSL  311 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            44555555555555555555555543

>PRK12370 invasion protein regulator; Provisional

Probab=88.42  E-value=1.1  Score=42.89  Aligned_cols=76  Identities=16%  Similarity=-0.004  Sum_probs=52.1

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhcccccc-----------ccchhHHHHHHHh-------hhhhhhHHHHHHHHh
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-----------QLFGKYRDMALAV-------KNPCHLNMAACLLKL  246 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~-----------~~~~~~~~~~~~l-------~~~~~~N~A~c~lKl  246 (261)
                      .-..|.-++..|++.+|+..|.+++++-......           ...++-...++..       ....+.|++.|+..+
T Consensus       375 ~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~  454 (553)
T PRK12370        375 KYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLK  454 (553)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhC
Confidence            4567899999999999999999999875432100           0001111112221       233588999999999


Q ss_pred             hCHHHHHHHHHhhc
Q 024876          247 KRYEEAIGQCSLVS  260 (261)
Q Consensus       247 ~~~~~ai~~c~~aL  260 (261)
                      |++++|+..+.+++
T Consensus       455 G~~~eA~~~~~~~~  468 (553)
T PRK12370        455 GKHELARKLTKEIS  468 (553)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999887654

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.30  E-value=1.5  Score=30.21  Aligned_cols=63  Identities=14%  Similarity=0.052  Sum_probs=40.2

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHH
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLL  244 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~l  244 (261)
                      .|..+-.++.++=+.|+|.+|+.+|+.|+..|-.... ..++.....+-..++.=|.|+|-..-
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~-~~pD~~~k~~yr~ki~eY~~Rae~Lk   67 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK-NYPDSPTRLIYEQMINEYKRRIEVLE   67 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455666777899999999999999998854211 11123333444556666777776543

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PRK15331 chaperone protein SicA; Provisional

Probab=87.99  E-value=1.4  Score=35.15  Aligned_cols=55  Identities=16%  Similarity=0.285  Sum_probs=39.8

Q ss_pred             hHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       189 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      |--+=..++|..|+..|..|..+-..+.                 .-+...+.||+.+++...|+.....|+
T Consensus        78 aa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp-----------------~p~f~agqC~l~l~~~~~A~~~f~~a~  132 (165)
T PRK15331         78 AAVCQLKKQFQKACDLYAVAFTLLKNDY-----------------RPVFFTGQCQLLMRKAAKARQCFELVN  132 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccCCC-----------------CccchHHHHHHHhCCHHHHHHHHHHHH
Confidence            3333457888899999988886533221                 236678999999999999998766654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=87.96  E-value=1.3  Score=36.74  Aligned_cols=62  Identities=23%  Similarity=0.193  Sum_probs=49.8

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ..+-.+|-.+.|.+++..|+.-..+||.+-..                 ....+..+|-.|-|+..|++|+.+..++|+
T Consensus       135 Ily~Nraaa~iKl~k~e~aI~dcsKaiel~pt-----------------y~kAl~RRAeayek~ek~eealeDyKki~E  196 (271)
T KOG4234|consen  135 ILYSNRAAALIKLRKWESAIEDCSKAIELNPT-----------------YEKALERRAEAYEKMEKYEEALEDYKKILE  196 (271)
T ss_pred             HHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-----------------hHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            34556788889999999999999999986332                 124556789999999999999999988864

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=87.93  E-value=0.53  Score=27.44  Aligned_cols=32  Identities=22%  Similarity=0.156  Sum_probs=25.4

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhcc
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  214 (261)
                      ..+...|+.++..|+|.+|...|++++.+...
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   34 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIRER   34 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence            34567789999999999999999999987654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=87.82  E-value=0.42  Score=42.62  Aligned_cols=37  Identities=8%  Similarity=0.102  Sum_probs=28.6

Q ss_pred             hhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876          176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       176 ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      -.+++.+.+.-+........++|..++..|++.++.-
T Consensus       263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e  299 (504)
T KOG0624|consen  263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE  299 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            3446666677777788888899999999999988753

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.79  E-value=1.1  Score=30.64  Aligned_cols=61  Identities=16%  Similarity=0.131  Sum_probs=37.1

Q ss_pred             hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHH
Q 024876          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA  241 (261)
Q Consensus       180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~  241 (261)
                      ..+..+-.+|...=+.|+|..|+..|..|+.+|-....... +......-..++.-|+++|-
T Consensus         4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~-~~~~k~~~~~k~~eyl~RaE   64 (75)
T cd02678           4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEK-NPKSKESIRAKCTEYLDRAE   64 (75)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHHH
Confidence            44455556667777899999999999999998854211111 22233333444445555543

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=87.56  E-value=1.3  Score=38.62  Aligned_cols=58  Identities=22%  Similarity=0.201  Sum_probs=45.3

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .++-.+-+-|.|..|++-.++||.+-                 .-....|.-|.++|+-+|+|.+|+....+||+
T Consensus       120 NRAAAy~~Lg~~~~AVkDce~Al~iD-----------------p~yskay~RLG~A~~~~gk~~~A~~aykKaLe  177 (304)
T KOG0553|consen  120 NRAAAYSKLGEYEDAVKDCESALSID-----------------PHYSKAYGRLGLAYLALGKYEEAIEAYKKALE  177 (304)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcC-----------------hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc
Confidence            44555666777777777777777652                 22347899999999999999999999999985

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=87.36  E-value=0.67  Score=25.88  Aligned_cols=28  Identities=21%  Similarity=0.165  Sum_probs=24.0

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      .-..|..+.+.|++..|+..|++++++-
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            3456888899999999999999999863

...

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=87.28  E-value=1.1  Score=44.29  Aligned_cols=64  Identities=25%  Similarity=0.215  Sum_probs=50.3

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      +.-+.+.+..+-..|+|+.|++.|..++..-.+.                ..-++.++|.||+.+++|++|+....+||.
T Consensus       414 ~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~----------------~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~  477 (895)
T KOG2076|consen  414 VDLYLDLADALTNIGKYKEALRLLSPITNREGYQ----------------NAFVWYKLARCYMELGEYEEAIEFYEKVLI  477 (895)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc----------------chhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3445566777778899999999998887542211                146899999999999999999999999874

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=87.15  E-value=1.6  Score=40.93  Aligned_cols=60  Identities=23%  Similarity=0.316  Sum_probs=46.1

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      ..|.-+..+|+...|+..|++|+..             ..+.+++...|+..++.|++-+.+|.+|..+...-
T Consensus       272 ~~gR~~~~~g~~~~Ai~~~~~a~~~-------------q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L  331 (468)
T PF10300_consen  272 FEGRLERLKGNLEEAIESFERAIES-------------QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL  331 (468)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhccc-------------hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence            3455556678888888888887732             12356778899999999999999999999876654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=86.46  E-value=1.7  Score=37.05  Aligned_cols=65  Identities=17%  Similarity=0.172  Sum_probs=50.5

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      -+..+-+.|....+.|+|..|++.|.+...-....              .+.-...+.++-+++|-++|.+|+...++=
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s--------------~~~~qa~l~l~yA~Yk~~~y~~A~~~~drF   97 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS--------------PYSEQAQLDLAYAYYKNGEYDLALAYIDRF   97 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------------cccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            34667788899999999999999999887543322              111256778999999999999999987653

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=85.98  E-value=1.2  Score=23.63  Aligned_cols=23  Identities=26%  Similarity=0.192  Sum_probs=20.7

Q ss_pred             hhhHHHHHHHHhhCHHHHHHHHH
Q 024876          235 CHLNMAACLLKLKRYEEAIGQCS  257 (261)
Q Consensus       235 ~~~N~A~c~lKl~~~~~ai~~c~  257 (261)
                      +++|+|..+..+|++++|...+.
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            67899999999999999998765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.62  E-value=1.9  Score=29.37  Aligned_cols=58  Identities=19%  Similarity=0.095  Sum_probs=34.4

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHH
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA  240 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A  240 (261)
                      +..+-..|...=+.|+|..|+..|..|+..|-...... .+......-.-++.-|+++|
T Consensus         6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~-~~~~~k~~l~~k~~~yl~Ra   63 (75)
T cd02656           6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAE-KEPKLRKLLRKKVKEYLDRA   63 (75)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHH
Confidence            33444455666677999999999999999886432112 12222233334444555554

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=85.59  E-value=2.1  Score=39.72  Aligned_cols=55  Identities=29%  Similarity=0.331  Sum_probs=42.2

Q ss_pred             hHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       189 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      |--+++.+++++|+..+++++......                 ..+..|+|.+++++|++.+|+...+..+
T Consensus       347 ~~i~~~~nk~~~A~e~~~kal~l~P~~-----------------~~l~~~~a~all~~g~~~eai~~L~~~~  401 (484)
T COG4783         347 GDILLEANKAKEAIERLKKALALDPNS-----------------PLLQLNLAQALLKGGKPQEAIRILNRYL  401 (484)
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCc-----------------cHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence            344456788888888888888765431                 3688999999999999999998766543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=85.23  E-value=1.9  Score=43.01  Aligned_cols=28  Identities=7%  Similarity=0.065  Sum_probs=23.9

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      +...|..+.+.|++..|+..|++++..-
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~   79 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSLE   79 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4556778899999999999999999864

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.09  E-value=1.6  Score=39.15  Aligned_cols=54  Identities=26%  Similarity=0.375  Sum_probs=41.8

Q ss_pred             hHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       189 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      |--+|.-|+|++|+..|+-+..-  .+.               -..+..|+|-|++=+|.|.+|.....+|
T Consensus        64 a~C~fhLgdY~~Al~~Y~~~~~~--~~~---------------~~el~vnLAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   64 AHCYFHLGDYEEALNVYTFLMNK--DDA---------------PAELGVNLACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHhhccHHHHHHHHHHHhcc--CCC---------------CcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence            34568999999999999887752  111               1358899999999999999998866554

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.54  E-value=3.6  Score=28.64  Aligned_cols=53  Identities=13%  Similarity=0.151  Sum_probs=38.9

Q ss_pred             hhhhHHHHHHHHHHHHHhhcccc--c--cccchhHHHHHHHhhhhhhhHHHHHHHHh
Q 024876          194 KEEKLEEAMQQYEMAIAYMGDDF--M--FQLFGKYRDMALAVKNPCHLNMAACLLKL  246 (261)
Q Consensus       194 k~~~~~~A~~~Y~kal~~l~~~~--~--~~~~~~~~~~~~~l~~~~~~N~A~c~lKl  246 (261)
                      ..|....|+..|++|++.+..-.  +  .....++++.++.++-++..|+..+.-.|
T Consensus        20 E~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL   76 (79)
T cd02679          20 EWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL   76 (79)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34788899999999999986532  1  13345778888888888888877765544

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.35  E-value=1.8  Score=39.37  Aligned_cols=60  Identities=15%  Similarity=0.168  Sum_probs=48.5

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      .+.|-.+...|++..|++.|.|+..|+-..              +--+..++|+-.+-+-+++|-....+.++|
T Consensus       154 ~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~--------------khvInm~ln~i~VSI~~~nw~hv~sy~~~A  213 (466)
T KOG0686|consen  154 EDLGDHYLDCGQLDNALRCYSRARDYCTSA--------------KHVINMCLNLILVSIYMGNWGHVLSYISKA  213 (466)
T ss_pred             HHHHHHHHHhccHHHHHhhhhhhhhhhcch--------------HHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence            345777788999999999999999987542              233567888888889999999998887776

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=84.14  E-value=3.7  Score=28.00  Aligned_cols=34  Identities=24%  Similarity=0.251  Sum_probs=25.7

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhcc
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  214 (261)
                      .+..+-.+|...=+.|+|..|+..|..|+..|..
T Consensus         7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~   40 (77)
T smart00745        7 KAKELISKALKADEAGDYEEALELYKKAIEYLLE   40 (77)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3344445556665689999999999999998865

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=83.87  E-value=2.2  Score=37.98  Aligned_cols=53  Identities=23%  Similarity=0.322  Sum_probs=42.8

Q ss_pred             HhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          191 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       191 ~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..|--|||..|+.-.++|+.+-                 .-.++++..-|.|++.|++|.+|+..|.+.|
T Consensus       128 a~~~l~NyRs~l~Dcs~al~~~-----------------P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~  180 (390)
T KOG0551|consen  128 AQLYLGNYRSALNDCSAALKLK-----------------PTHLKAYIRGAKCLLELERFAEAVNWCEEGL  180 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC-----------------cchhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence            3344588888888888888752                 2236899999999999999999999998765

>smart00028 TPR Tetratricopeptide repeats

Probab=83.86  E-value=1.5  Score=22.74  Aligned_cols=26  Identities=35%  Similarity=0.428  Sum_probs=22.8

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHh
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAY  211 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~  211 (261)
                      ...|..++..++|..|...|++++..
T Consensus         5 ~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        5 YNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            45688899999999999999999875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=83.57  E-value=3.1  Score=35.08  Aligned_cols=82  Identities=18%  Similarity=0.064  Sum_probs=51.6

Q ss_pred             hhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc--------------cccchhHHHH---HHHhhhhhhhHHHH
Q 024876          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM--------------FQLFGKYRDM---ALAVKNPCHLNMAA  241 (261)
Q Consensus       179 ~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~--------------~~~~~~~~~~---~~~l~~~~~~N~A~  241 (261)
                      -..+...-+.|-.++.+|++..|....++||..-.....              .+..++.-..   +..-.-.++||...
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~  111 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence            345556677889999999999999999999986433210              0000111111   11112246777777


Q ss_pred             HHHHhhCHHHHHHHHHhhc
Q 024876          242 CLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       242 c~lKl~~~~~ai~~c~~aL  260 (261)
                      -...+|+|++|.....+||
T Consensus       112 FLC~qg~~~eA~q~F~~Al  130 (250)
T COG3063         112 FLCAQGRPEEAMQQFERAL  130 (250)
T ss_pred             HHHhCCChHHHHHHHHHHH
Confidence            7777778877777777765

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=83.42  E-value=1.9  Score=40.82  Aligned_cols=49  Identities=16%  Similarity=0.163  Sum_probs=34.1

Q ss_pred             HHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          203 QQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       203 ~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      +.|.||++++..-....          .--..+++-|.+.+..-.+..+||...++||+
T Consensus       444 ~efdraiDcf~~AL~v~----------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq  492 (579)
T KOG1125|consen  444 GEFDRAVDCFEAALQVK----------PNDYLLWNRLGATLANGNRSEEAISAYNRALQ  492 (579)
T ss_pred             hHHHHHHHHHHHHHhcC----------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence            45777777765421111          11136788889999999999999999999974

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=83.26  E-value=2.7  Score=41.89  Aligned_cols=27  Identities=7%  Similarity=-0.128  Sum_probs=20.0

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYMG  213 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~  213 (261)
                      ..|..+...|++..|+..+++++....
T Consensus       364 ~~a~~l~~~g~~~eA~~~l~~al~~~P  390 (765)
T PRK10049        364 LLSQVAKYSNDLPQAEMRARELAYNAP  390 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            355666778888888888888877643

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=82.41  E-value=1.9  Score=37.12  Aligned_cols=58  Identities=24%  Similarity=0.185  Sum_probs=32.3

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ...|..++..|++..|+..|+++++.-..+                 ...+.++|-++.+.|++++|...-.+++
T Consensus       218 ~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-----------------~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  218 DALAAAYLQLGRYEEALEYLEKALKLNPDD-----------------PLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHSTT------------------HHHHHHHHHHHT----------------
T ss_pred             HHHHHHhccccccccccccccccccccccc-----------------cccccccccccccccccccccccccccc
Confidence            445788888999999999999988754322                 3678899999999999999998877765

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=81.49  E-value=2.2  Score=26.12  Aligned_cols=25  Identities=20%  Similarity=0.205  Sum_probs=22.4

Q ss_pred             hhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          236 HLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       236 ~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+|+|..|+++|+++.|..--.++|
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHH
Confidence            4789999999999999999888776

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=81.28  E-value=2.7  Score=35.65  Aligned_cols=55  Identities=20%  Similarity=0.202  Sum_probs=42.6

Q ss_pred             hHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHH-hhCHHHHHHHHHhhc
Q 024876          197 KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK-LKRYEEAIGQCSLVS  260 (261)
Q Consensus       197 ~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lK-l~~~~~ai~~c~~aL  260 (261)
                      -...|...|+.|+.+.....+.         ...+++.+.+|.|..|.. +++..+|+.-+.+|+
T Consensus       141 ~~~~a~~aY~~A~~~a~~~L~~---------~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af  196 (236)
T PF00244_consen  141 AAEKALEAYEEALEIAKKELPP---------THPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF  196 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCT---------TSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHhcccCC---------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            3468999999999987653221         146888999999998866 899999999998875

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=81.21  E-value=1.9  Score=37.74  Aligned_cols=28  Identities=29%  Similarity=0.296  Sum_probs=23.9

Q ss_pred             hhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          234 PCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .+++-+|.|++.+++|++|.....+||+
T Consensus       202 ~~lng~A~~~l~~~~~~eAe~~L~~al~  229 (290)
T PF04733_consen  202 KLLNGLAVCHLQLGHYEEAEELLEEALE  229 (290)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4577799999999999999999998874

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=80.84  E-value=7.6  Score=29.46  Aligned_cols=64  Identities=20%  Similarity=0.182  Sum_probs=47.3

Q ss_pred             HHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          190 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       190 n~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      ..+-+-|+|..++..-.+||.|++..-...  .++    -++.+..-.|+|..+--+|+.++|+...+.+
T Consensus        63 ~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~--qde----GklWIaaVfsra~Al~~~Gr~~eA~~~fr~a  126 (144)
T PF12968_consen   63 GALAGLGRYDECLQSADRALRYFNRRGELH--QDE----GKLWIAAVFSRAVALEGLGRKEEALKEFRMA  126 (144)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHHHHHH--TT--STH----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHhhccccc--ccc----chhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            345578999999999999999997531111  111    4667888999999999999999999987665

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=80.21  E-value=3.1  Score=22.66  Aligned_cols=26  Identities=15%  Similarity=0.226  Sum_probs=22.4

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      ..|.-+++.|++..|+..|++.+...
T Consensus         5 ~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    5 RLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            46778889999999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	261
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		1e-121
2f4e_A	180	N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia		3e-76
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		5e-12
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		2e-10
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		8e-10
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		4e-09
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		7e-07
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		2e-06
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		2e-06
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		3e-06
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		4e-06
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		7e-06
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		7e-06
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		7e-06
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		7e-06
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		7e-06
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		1e-05
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		1e-05
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		2e-05
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		3e-05
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-05
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		4e-05
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-05
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		5e-05
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		5e-05
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		5e-05
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		5e-05
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		5e-05
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		5e-05
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		5e-05
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		1e-04
2ke0_A	117	Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso		1e-04
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		1e-04
4dz3_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		1e-04
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		1e-04
2y78_A	133	Crystal Structure Of Bpss1823, A Mip-Like Chaperone		1e-04
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		2e-04
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		2e-04
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		2e-04
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		3e-04
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-04
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		3e-04

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score =  431 bits (1107), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 199/242 (82%), Positives = 225/242 (92%)
Query: 18  ESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHY 77
           ESEIVTE +A V  EP Q+G+ PPKVDSE EVL EKV+KQIIKEGHG KPSKYSTCFLHY
Sbjct: 15  ESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHY 74
Query: 78  RAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGK 137
           RAW ++++HKF+DTW EQQP+E+VLGKEKKE+ GLAIGV+SMK+GE AL+HVGWEL YGK
Sbjct: 75  RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134
Query: 138 EGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEK 197
           EG+FSFPNV PMADL+YEV +IGFDETKEGKARSDMTVEERIGAADRRKMDGN+LFKEEK
Sbjct: 135 EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEK 194
Query: 198 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257
           LEEAMQQYEMAIAYMGDDFMFQL+GKY+DMALAVKNPCHLN+AACL+KLKRY+EAIG C+
Sbjct: 195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254
Query: 258 LV 259
           +V
Sbjct: 255 IV 256

>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score =  281 bits (718), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 132/166 (79%), Positives = 150/166 (90%)
Query: 18  ESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHY 77
           ESEIVTE +A V  EP Q+G+ PPKVDSE EVL EKV+KQIIKEGHG KPSKYSTCFLHY
Sbjct: 15  ESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHY 74
Query: 78  RAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGK 137
           RAW ++++HKF+DTW EQQP+E+VLGKEKKE+ GLAIGV+SMK+GE AL+HVGWEL YGK
Sbjct: 75  RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134
Query: 138 EGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAAD 183
           EG+FSFPNV PMADL+YEV +IGFDETKEGKARSDMTVEERIGAAD
Sbjct: 135 EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAAD 180

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 89/172 (51%), Gaps = 8/172 (4%)
Query: 88  FDDTWLEQQPLEMVLGK-EKKEM-TGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN 145
           + D   +Q+ L   +G+ E  ++  GL   +  M+ GEH+++++     +G  G   F  
Sbjct: 55  YKDKLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKF-Q 113
Query: 146 VSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQY 205
           + P A+L YE+ L  F++ KE     +M  EE++  +   K  G   FKE K ++A+ QY
Sbjct: 114 IPPNAELKYELHLKSFEKAKES---WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQY 170
Query: 206 EMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257
           +  ++++  +  F    +    A A++   HLN+A C LKL+ +  AI  C+
Sbjct: 171 KKIVSWLEYESSFS--NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN 220

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 87/172 (50%), Gaps = 8/172 (4%)
Query: 88  FDDTWLEQQPLEMVLGK-EKKEM-TGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN 145
           + D   +Q+ L   +G+ E  ++  GL   +   + GEH+++++     +G  G   F  
Sbjct: 55  YKDKLFDQRELRFEIGEGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSVGKEKF-Q 113
Query: 146 VSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQY 205
           + P A+L YE+ L  F++ KE     +   EE++  +   K  G   FKE K ++A+ QY
Sbjct: 114 IPPNAELKYELHLKSFEKAKES---WEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQY 170
Query: 206 EMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 257
           +  ++++  +  F    +    A A++   HLN+A C LKL+ +  AI  C+
Sbjct: 171 KKIVSWLEYESSFS--NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN 220

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 170
           G+   +  M+  E  +LH+G   G+G+ G   F  + P A+L+YEV L  F++ KE    
Sbjct: 201 GIDKALEKMQREEQCILHLGPRYGFGEAGKPKF-GIEPNAELIYEVTLKSFEKAKES--- 256
Query: 171 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 230
            +M  +E++  A   K  G   FK  K  +A+ QY   ++++  +  + L  K    + +
Sbjct: 257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWL--EMEYGLSEKESKASES 314
Query: 231 VKNPCHLNMAACLLKLKRYEEAIGQC 256
                 LN+A C LKL+ Y +A+  C
Sbjct: 315 FLLAAFLNLAMCYLKLREYTKAVECC 340

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 170
           G+   +  M+  E  +L++G   G+G+ G   F  + P A+L+YEV L  F++ KE    
Sbjct: 201 GIDKALEKMQREEQCILYLGPRYGFGEAGKPKF-GIEPNAELIYEVTLKSFEKAKES--- 256
Query: 171 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 230
            +M  +E++  A   K  G   FK  K  +A+ QY   ++++  +  + L  K    + +
Sbjct: 257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASES 314
Query: 231 VKNPCHLNMAACLLKLKRYEEAIGQC 256
                 LN+A C LKL+ Y +A+  C
Sbjct: 315 FLLAAFLNLAMCYLKLREYTKAVECC 340

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +    +P + +LGK++  + GL
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQEV-IRGL 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +    +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQE-VIRGW 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           A GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  AEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +    +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQEV-IRGF 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +    +P + VLGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFVLGKQEV-IRGW 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A L+++V L+
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPNATLIFDVELL 104

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 54  VTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLA 113
           V K +I+EG G   +  ++  + Y  + E     FD  +  + P  M LG E   + G+ 
Sbjct: 28  VLKDVIREGAGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLG-EDITLWGME 86
Query: 114 IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
           +G+ SM+ GE A         YG  G    P + P   +++E+ L+ F
Sbjct: 87  LGLLSMRRGELARFLFKPNYAYGTLG--CPPLIPPNTTVLFEIELLDF 132

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +    +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQE-VIRGW 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  QEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +    +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQEV-IRGW 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +    +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQEV-IRGW 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +    +P + +LGK++  + G 
Sbjct: 4   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQEV-IRGW 61
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 62  EEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 106

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +  + +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDKNKPFKFMLGKQE-VIRGW 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGVPGI--IPPHATLVFDVELL 104

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           + EG G +     T  +HY  W  +   KFD +     P E VLG     + G   GV  
Sbjct: 111 LTEGSGAEARAGQTVSVHYTGWL-TDGQKFDSSKDRNDPFEFVLGG-GMVIKGWDEGVQG 168
Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           MK G    L +  +LGYG  G+     + P A LV+EV L+
Sbjct: 169 MKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 207

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 52  EKVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
           E V K I +EG G + P      F+HY  W      KFD +   +      LGK  + + 
Sbjct: 30  EGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGT-KFDSSLDRKDKFSFDLGK-GEVIK 87
Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
              I V++MK GE   +    E  YG  G  S P + P A LV+EV L  F
Sbjct: 88  AWDIAVATMKVGELCRITCKPEYAYGSAG--SPPKIPPNATLVFEVELFEF 136

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P    TC +HY    E  + KFD +    +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKAGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQEV-IRGW 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 60/144 (41%), Gaps = 12/144 (8%)
Query: 52  EKVTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
           E V K I +EG G + P      F+HY  W      KFD +   +      LGK  + + 
Sbjct: 51  EGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGT-KFDSSLDRKDKFSFDLGK-GEVIK 108
Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 170
              I +++MK GE   +    E  YG  G  S P + P A LV+EV L  F         
Sbjct: 109 AWDIAIATMKVGEVCHITCKPEYAYGSAG--SPPKIPPNATLVFEVELFEF-------KG 159
Query: 171 SDMTVEERIGAADRRKMDGNALFK 194
            D+T EE  G   R +  G    K
Sbjct: 160 EDLTEEEDGGIIRRIQTRGEGYAK 183

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           + EG G +     T  +HY  W  +   KFD +     P   VLG     + G   GV  
Sbjct: 111 LTEGSGAEARAGQTVSVHYTGWL-TDGQKFDSSKDRNDPFAFVLGG-GMVIKGWDEGVQG 168
Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           MK G    L +  +LGYG  G+     + P A LV+EV L+
Sbjct: 169 MKVGGVRRLTIPPQLGYGARGAAGV--IPPNATLVFEVELL 207

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + K D +    +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KMDSSRDRNKPFKFMLGKQEV-IRGW 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           + EG G +     T  +HY  W  +   KFD +     P   VLG     + G   GV  
Sbjct: 111 LTEGSGAEARAGQTVSVHYTGWL-TDGQKFDSSKDRNDPFAFVLGG-GMVIKGWDEGVQG 168
Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           MK G    L +  +LGYG  G+     + P A LV+EV L+
Sbjct: 169 MKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 207

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           + EG G +     T  +HY  W  +   KFD +     P   VLG     + G   GV  
Sbjct: 111 LTEGSGAEARAGQTVSVHYTGWL-TDGQKFDSSKDRNDPFAFVLGG-GMVIKGWDEGVQG 168
Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           MK G    L +  +LGYG  G+     + P A LV+EV L+
Sbjct: 169 MKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 207

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 52  EKVTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
           E V K I +EG G + P      F+HY  W      KFD +   +      LGK  + + 
Sbjct: 31  EGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGT-KFDSSLDRKDKFSFDLGK-GEVIK 88
Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
              I +++MK GE   +    E  YG  G  S P + P A LV+EV L  F
Sbjct: 89  AWDIAIATMKVGEVCHITCKPEYAYGSAG--SPPKIPPNATLVFEVELFEF 137

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 50  LHEKVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKE 108
           +  ++ K+++  G G  KP       +HY       +  FD +    +P +  LG   + 
Sbjct: 22  MSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQ-FDSSRSRGKPFQFTLG-AGEV 79
Query: 109 MTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           + G   GV++M  GE AL  + ++L YG+ G    P + P A LV+EV L+
Sbjct: 80  IKGWDQGVATMTLGEKALFTIPYQLAYGERG--YPPVIPPKATLVFEVELL 128

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + K D +    +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KVDSSRDRNKPFKFMLGKQEV-IRGW 59
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 54  VTKQIIK---EGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
           V K I+K   EG    P K +   +HY    EST   FD ++    P +  L ++ + + 
Sbjct: 18  VIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHL-EQGEVIK 76
Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSF-SFPNVSPMADLVYEVVLIGFDE 163
           G  I VSSM+  E  L+ +    GYG EG   S P  S    L++E+ L+ F E
Sbjct: 77  GWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSV---LLFEIELLSFRE 127

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 54  VTKQIIK---EGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
           V K I+K   EG    P K +   +HY    EST   FD ++    P +  L ++ + + 
Sbjct: 18  VIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHL-EQGEVIK 76
Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSF-SFPNVSPMADLVYEVVLIGFDE 163
           G  I VSSM+  E  L+ +    GYG EG   S P  S    L++E+ L+ F E
Sbjct: 77  GWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSV---LLFEIELLSFRE 127

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 52  EKVTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
           E V K I +EG G + P      F+HY  W      KFD +   +      LGK  + + 
Sbjct: 35  EGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGT-KFDSSLDRKDKFSFDLGK-GEVIK 92
Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
              I +++MK GE   +    E  YG  G  S P + P A LV+EV L  F
Sbjct: 93  AWDIAIATMKVGEVCHITCKPEYAYGSAG--SPPKIPPNATLVFEVELFEF 141

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 54  VTKQIIKEGHG---QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
           V K I+++G G     P K +   +HY    ES+   FD +     P +  LG + + + 
Sbjct: 17  VVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLG-QGEVIK 75
Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSF-SFPNVSPMADLVYEVVLIGFDE 163
           G  I V+SM   E   + +  + GYG+EG   S P  S    L++E+ LI F E
Sbjct: 76  GWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSV---LIFEIELISFRE 126

>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           + EG G +     T  +HY  W  +   KFD +     P   VLG     + G   GV  
Sbjct: 19  LTEGSGAEARAGQTVSVHYTGWL-TDGQKFDSSKDRNDPFAFVLGG-GMVIKGWDEGVQG 76
Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           MK G    L +  +LGYG  G+     + P A LV+EV L+
Sbjct: 77  MKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 115

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 11/99 (11%)
Query: 168 KARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM-----GDDFMFQLFG 222
           K+  D T EE++ +A   K +GN  FK+ ++ EA+ +Y+ A+ +       DD +  L  
Sbjct: 24  KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI--LLD 81
Query: 223 KYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK 261
           K +++ ++    C+LN+A C  K K Y +AI   S V K
Sbjct: 82  KKKNIEIS----CNLNLATCYNKNKDYPKAIDHASKVLK 116

>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           + EG G +     T  +HY  W  +   KFD +     P   VLG     + G   GV  
Sbjct: 15  LTEGSGAEARAGQTVSVHYTGWL-TDGQKFDSSKDRNDPFAFVLGG-GHVIKGWDEGVQG 72
Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           MK G    L +  +LGYG  G+     + P A LV+EV L+
Sbjct: 73  MKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 111

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K + + G+G++ P      ++HY+    S   KFD +    +P    LGK  + +   
Sbjct: 37  VLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHDRNEPFVFSLGK-GQVIKAW 94
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
            IGV++MK GE   L    E  YG  G  S P +   A L +E+ L+ F
Sbjct: 95  DIGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 141

>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           + EG G +     T  +HY  W  +   KFD +     P   VLG     + G   GV  
Sbjct: 35  LTEGSGAEARAGQTVSVHYTGWL-TDGQKFDSSKDRNDPFAFVLGG-GMVIKGWDEGVQG 92
Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           MK G    L +  +LGYG  G+     + P A LV+EV L+
Sbjct: 93  MKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 131

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K + + G+G++ P      ++HY+    S   KFD +    +P    LGK  + +   
Sbjct: 37  VLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHDRNEPFVFSLGK-GQVIKAW 94
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
            IGV++MK GE   L    E  YG  G  S P +   A L +E+ L+ F
Sbjct: 95  DIGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 141

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K + + G+G++ P      ++HY+    S   KFD +    +P    LGK  + +   
Sbjct: 37  VLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHDRNEPFVFSLGK-GQVIKAW 94
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
            IGV++MK GE   L    E  YG  G  S P +   A L +E+ L+ F
Sbjct: 95  DIGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 141

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K + + G+G++ P      ++HY+    S   KFD +    +P    LGK  + +   
Sbjct: 21  VLKIVKRVGNGEETPMIGDKVYVHYKG-KLSNGKKFDSSHDRNEPFVFSLGK-GQVIKAW 78
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
            IGV++MK GE   L    E  YG  G  S P +   A L +E+ L+ F
Sbjct: 79  DIGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 125

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K + + G+G++ P      ++HY+    S   KFD +    +P    LGK  + +   
Sbjct: 21  VLKIVKRVGNGEETPMIGDKVYVHYKG-KLSNGKKFDSSHDRNEPFVFSLGK-GQVIKAW 78
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
            IGV++MK GE   L    E  YG  G  S P +   A L +E+ L+ F
Sbjct: 79  DIGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 125

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 59  IKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS 118
           + EG G +     T  +HY  W  +   KF  +     P   VLG     + G   GV  
Sbjct: 111 LTEGSGAEARAGQTVSVHYTGWL-TDGQKFGSSKDRNDPFAFVLGG-GMVIKGWDEGVQG 168
Query: 119 MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
           MK G    L +  +LGYG  G+     + P A LV+EV L+
Sbjct: 169 MKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 207

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 54  VTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K I KEG G  KP+  +T  +HY    E+   KFD +          LG+    + G 
Sbjct: 16  VLKLIKKEGQGVVKPTTGTTVKVHYVGTLENG-TKFDSSRDRGDQFSFNLGR-GNVIKGW 73
Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 159
            +GV++M  GE A   +  + GYG  G  S P +   A L++EV L 
Sbjct: 74  DLGVATMTKGEVAEFTIRSDYGYGDAG--SPPKIPGGATLIFEVELF 118

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-72
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	4e-58
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-45
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	5e-37
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-18
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	3e-23
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-23
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	6e-17
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	4e-15
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	5e-15
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	1e-14
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	1e-13
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	7e-08
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	2e-14
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	2e-13
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	6e-13
2ppn_A	107	FK506-binding protein 1A; high resolution protein	1e-12
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-12
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	2e-12
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	4e-11
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	5e-12
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	6e-12
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	9e-12
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	1e-11
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	1e-11
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	3e-11
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	6e-11
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	3e-10
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	1e-09
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	2e-09
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-09
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	3e-09
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	4e-09
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	7e-09
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	2e-08
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-08
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	4e-08
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-07
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	1e-07
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-07
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-07
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-04
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	5e-07
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	7e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-04
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-04
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	4e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	8e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-04
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	3e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	8e-04

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  224 bits (571), Expect = 2e-72
 Identities = 202/259 (77%), Positives = 230/259 (88%), Gaps = 3/259 (1%)

Query: 1   MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIK 60
           M+E     + Q      ESEIVTE +A V  EP Q+G+ PPKVDSE EVL EKV+KQIIK
Sbjct: 1   MDE---SLEHQTQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIK 57

Query: 61  EGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMK 120
           EGHG KPSKYSTCFLHYRAW ++++HKF+DTW EQQP+E+VLGKEKKE+ GLAIGV+SMK
Sbjct: 58  EGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMK 117

Query: 121 AGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIG 180
           +GE AL+HVGWEL YGKEG+FSFPNV PMADL+YEV +IGFDETKEGKARSDMTVEERIG
Sbjct: 118 SGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIG 177

Query: 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 240
           AADRRKMDGN+LFKEEKLEEAMQQYEMAIAYMGDDFMFQL+GKY+DMALAVKNPCHLN+A
Sbjct: 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIA 237

Query: 241 ACLLKLKRYEEAIGQCSLV 259
           ACL+KLKRY+EAIG C++V
Sbjct: 238 ACLIKLKRYDEAIGHCNIV 256

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score =  182 bits (463), Expect = 4e-58
 Identities = 135/183 (73%), Positives = 155/183 (84%), Gaps = 3/183 (1%)

Query: 1   MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIK 60
           M+E     + Q      ESEIVTE +A V  EP Q+G+ PPKVDSE EVL EKV+KQIIK
Sbjct: 1   MDE---SLEHQTQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIK 57

Query: 61  EGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMK 120
           EGHG KPSKYSTCFLHYRAW ++++HKF+DTW EQQP+E+VLGKEKKE+ GLAIGV+SMK
Sbjct: 58  EGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMK 117

Query: 121 AGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIG 180
           +GE AL+HVGWEL YGKEG+FSFPNV PMADL+YEV +IGFDETKEGKARSDMTVEERIG
Sbjct: 118 SGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIG 177

Query: 181 AAD 183
           AAD
Sbjct: 178 AAD 180

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  153 bits (389), Expect = 4e-45
 Identities = 53/210 (25%), Positives = 100/210 (47%), Gaps = 16/210 (7%)

Query: 53  KVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKK--EM 109
            + ++I   G G  KP++ +   +    +       + D   +Q+ L   +G+ +     
Sbjct: 26  GIIRRIQTRGEGYAKPNEGAIVEVALEGY-------YKDKLFDQRELRFEIGEGENLDLP 78

Query: 110 TGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKA 169
            GL   +  M+ GEH+++++     +G  G   F  + P A+L YE+ L  F++ KE   
Sbjct: 79  YGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKF-QIPPNAELKYELHLKSFEKAKE--- 134

Query: 170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMAL 229
             +M  EE++  +   K  G   FKE K ++A+ QY+  ++++  +  F    +    A 
Sbjct: 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS--NEEAQKAQ 192

Query: 230 AVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259
           A++   HLN+A C LKL+ +  AI  C+  
Sbjct: 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKA 222

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  134 bits (339), Expect = 5e-37
 Identities = 54/257 (21%), Positives = 99/257 (38%), Gaps = 23/257 (8%)

Query: 15  EVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVL------------HEKVTKQIIKEG 62
           + GE   +     +  G        P       E+                + +   K  
Sbjct: 98  KRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGE 157

Query: 63  HGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAG 122
               P++ +T  +H           FD   +      +  G++     G+   +  M+  
Sbjct: 158 GYSNPNEGATVEIHLEGRCGGR--MFDCRDV---AFTVGEGEDHDIPIGIDKALEKMQRE 212

Query: 123 EHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAA 182
           E  +L++G   G+G+ G   F  + P A+L+YEV L  F++ KE     +M  +E++  A
Sbjct: 213 EQCILYLGPRYGFGEAGKPKF-GIEPNAELIYEVTLKSFEKAKE---SWEMDTKEKLEQA 268

Query: 183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAAC 242
              K  G   FK  K  +A+ QY   ++++  +  + L  K    + +      LN+A C
Sbjct: 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMC 326

Query: 243 LLKLKRYEEAIGQCSLV 259
            LKL+ Y +A+  C   
Sbjct: 327 YLKLREYTKAVECCDKA 343

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 83.6 bits (206), Expect = 2e-18
 Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 6/168 (3%)

Query: 23  TEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHG-QKPSKYSTCFLHYRAWA 81
           T++ A    E P         D   +     V K + + G+G + P      ++HY+   
Sbjct: 3   TDEGAKNNEESPTATVAEQGEDITSKK-DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 61

Query: 82  ESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSF 141
            +   KFD +    +P    LGK  + +    IGV++MK GE   L    E  YG  G  
Sbjct: 62  SN-GKKFDSSHDRNEPFVFSLGK-GQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAG-- 117

Query: 142 SFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDG 189
           S P +   A L +E+ L+ F      +    +   +R G       +G
Sbjct: 118 SLPKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEG 165

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 92.9 bits (231), Expect = 3e-23
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 158 LIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM 217
            + F   K  K+  D T EE++ +A   K +GN  FK+ ++ EA+ +Y+ A+ +      
Sbjct: 16  NLYFQGAK--KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE 73

Query: 218 FQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 259
           +       D    ++  C+LN+A C  K K Y +AI   S V
Sbjct: 74  WD-DQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 91.3 bits (227), Expect = 4e-23
 Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 173 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMAL-AV 231
              ++++ + +  +  GN LF ++  +EA+  Y  A+  +    + +  G+   + L   
Sbjct: 2   NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61

Query: 232 KNPCHLNMAACLLKLKRYEEAIGQCSLV 259
             P + NM+ C L +    EA    S V
Sbjct: 62  NIPLYANMSQCYLNIGDLHEAEETSSEV 89

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 74.2 bits (183), Expect = 6e-17
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 3/108 (2%)

Query: 54  VTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLA 113
           V K +I+EG G   +  ++  + Y  + E     FD  +  + P  M LG++   + G+ 
Sbjct: 28  VLKDVIREGAGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDIT-LWGME 86

Query: 114 IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
           +G+ SM+ GE A         YG  G    P + P   +++E+ L+ F
Sbjct: 87  LGLLSMRRGELARFLFKPNYAYGTLG--CPPLIPPNTTVLFEIELLDF 132

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 69.8 bits (171), Expect = 4e-15
 Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 16/161 (9%)

Query: 11  QAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEK-VTKQIIKEGHG--QKP 67
           Q P E  E+E     A         +    P  +  +++L    + K+ +  G     +P
Sbjct: 3   QPPAE--EAEQPGALAREFLAAMEPEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRP 60

Query: 68  SKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEK--KEMTGLAIGVSSMKAGEHA 125
            K     +H +   E    +      E+  L   LG     +    L + V  M  GE A
Sbjct: 61  VKGQVVTVHLQTSLE-NGTRVQ----EEPELVFTLGDCDVIQ---ALDLSVPLMDVGETA 112

Query: 126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 166
           ++    +  YG +GS S P + P A L  EV L    + + 
Sbjct: 113 MVTADSKYCYGPQGSRS-PYIPPHAALCLEVTLKTAVDLEH 152

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 68.9 bits (169), Expect = 5e-15
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 9/115 (7%)

Query: 54  VTKQIIKEGHG--QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTG 111
           + K+ +  G     +P K     +H +   E    +      E+  L   LG     +  
Sbjct: 19  LRKKTLVPGPPGSSRPVKGQVVTVHLQTSLE-NGTRVQ----EEPELVFTLGDCDV-IQA 72

Query: 112 LAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 166
           L + V  M  GE A++    +  YG +GS S P + P A L  EV L    +  +
Sbjct: 73  LDLSVPLMDVGETAMVTADSKYCYGPQGSRS-PYIPPHAALCLEVTLKTAVDRPD 126

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 71.8 bits (176), Expect = 1e-14
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 5/146 (3%)

Query: 42  KVDSEVEVLHEKVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEM 100
           KV  E E+  + + K+++KEG G   P       +HY       + KFD +       + 
Sbjct: 1   KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGK-KFDSSRDRDDTFKF 59

Query: 101 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIG 160
            LG+ +  + G   G+ +MK GE+AL  +  EL YG+ G  S P +   A L ++V L+ 
Sbjct: 60  KLGQGQV-IKGWDQGIKTMKKGENALFTIPPELAYGESG--SPPTIPANATLQFDVELLS 116

Query: 161 FDETKEGKARSDMTVEERIGAADRRK 186
           +   ++      +  +          
Sbjct: 117 WTSVRDIAKDGGIFKKILKEGDKWEN 142

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 69.1 bits (169), Expect = 1e-13
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 19/165 (11%)

Query: 16  VGESEIVT---EDAAFVRGEPPQDGDG--PP--KVDSEVEVLHEKVTKQ----------- 57
            GE  ++    +      G P     G  PP   +  ++E++  K   +           
Sbjct: 191 KGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKV 250

Query: 58  IIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVS 117
           + +    ++P++ +   +      +           EQ+P E    +E   + GL   V 
Sbjct: 251 LKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAV-IEGLDRAVL 309

Query: 118 SMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162
           +MK GE AL+ +  E  YG   S     V P + ++YEV L+ F 
Sbjct: 310 NMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFV 354

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 51.7 bits (124), Expect = 7e-08
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 9/117 (7%)

Query: 51  HEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMT 110
                K + +    + P      F+ Y A  E        +    + +E  +        
Sbjct: 127 GGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGT-VVSKS----EGVEFTVKDGHL-CP 180

Query: 111 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSF---PNVSPMADLVYEVVLIGFDET 164
            LA  V +MK GE  LL V  + G+G+ G  +      V P A LV ++ L+ +   
Sbjct: 181 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTV 237

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 14/114 (12%)

Query: 54  VTKQIIKEGHG--QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEK--KEM 109
           + K+ +  G     +P K     +H +   E+   +      E+  L   LG     +  
Sbjct: 15  LRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT-RVQ----EEPELVFTLGDCDVIQ-- 67

Query: 110 TGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE 163
             L + V  M  GE A++    +  YG +G    P + P A L  EV L    +
Sbjct: 68  -ALDLSVPLMDVGETAMVTADSKYCYGPQG--RSPYIPPHAALCLEVTLKTAVD 118

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 10/117 (8%)

Query: 54  VTKQIIKEGH---GQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEK--KE 108
           V K I+K+G       P K +   +HY    EST   FD ++    P +  L + +  K 
Sbjct: 18  VIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIK- 76

Query: 109 MTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETK 165
             G  I VSSM+  E  L+ +    GYG EG     ++   + L++E+ L+ F E +
Sbjct: 77  --GWDICVSSMRKNEKCLVRIESMYGYGDEG--CGESIPGNSVLLFEIELLSFRELE 129

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 63.1 bits (154), Expect = 6e-13
 Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 53  KVTKQIIKEGHG-QKPSKYSTCFLHYRAWAE------STRHKFDDTWLEQQPLEMVLGKE 105
           K TK I+K+G     P K       Y           +            +PL   +G  
Sbjct: 5   KYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVG 64

Query: 106 KKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162
           K  + G    + +M  GE A L +  E  YGK+G      + P   L++EV L+  D
Sbjct: 65  KV-IRGWDEALLTMSKGEKARLEIEPEWAYGKKG-QPDAKIPPNTKLIFEVELVDID 119

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 5/110 (4%)

Query: 54  VTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G   P +  TC +HY    E  + KFD +    +P + +LGK++  + G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQEV-IRGW 59

Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+  +
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATG--HPGIIPPHATLVFDVELLKLE 107

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 14/82 (17%)

Query: 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPC 235
                + ++ + +GN LFK      A+  Y  A+                D     +   
Sbjct: 22  TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--------------DATPQDQAVL 67

Query: 236 HLNMAACLLKLKRYEEAIGQCS 257
           H N AAC LKL+ Y++A  + S
Sbjct: 68  HRNRAACHLKLEDYDKAETEAS 89

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 45/163 (27%), Positives = 61/163 (37%), Gaps = 12/163 (7%)

Query: 18  ESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHG-QKPSKYSTCFLH 76
           E    TE  A     P +  D  PK D         V K I +EG G + P      F+H
Sbjct: 24  EEMKATESGAQSAPLPMEGVDISPKQDE-------GVLKVIKREGTGTEMPMIGDRVFVH 76

Query: 77  YRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYG 136
           Y  W      KFD +   +      LGK +  +    I +++MK GE   +    E  YG
Sbjct: 77  YTGWLLDGT-KFDSSLDRKDKFSFDLGKGEV-IKAWDIAIATMKVGEVCHITCKPEYAYG 134

Query: 137 KEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERI 179
             G  S P + P A LV+EV L  F      +      +    
Sbjct: 135 SAG--SPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQ 175

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 60.6 bits (147), Expect = 4e-11
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 18/133 (13%)

Query: 46  EVEVLH------------EKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWL 93
           EVE+                + +   +     KP++ +   +    + +     FD   L
Sbjct: 151 EVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDK--LFDQREL 208

Query: 94  EQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLV 153
                E+  G+      GL   +  M+ GEH+++++     +G  G      + P A+L 
Sbjct: 209 R---FEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGK-EKFQIPPNAELK 264

Query: 154 YEVVLIGFDETKE 166
           YE+ L  F++ KE
Sbjct: 265 YELHLKSFEKAKE 277

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 60.8 bits (148), Expect = 5e-12
 Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 5/109 (4%)

Query: 54  VTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K I KEG G  KP+  +T  +HY    E+   KFD +          LG+    + G 
Sbjct: 16  VLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGT-KFDSSRDRGDQFSFNLGRGNV-IKGW 73

Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
            +GV++M  GE A   +  + GYG  G  S P +   A L++EV L  +
Sbjct: 74  DLGVATMTKGEVAEFTIRSDYGYGDAG--SPPKIPGGATLIFEVELFEW 120

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 60.5 bits (147), Expect = 6e-12
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 9/127 (7%)

Query: 42  KVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMV 101
               E  V    +       G+G +  K      HY    E+ +  FD ++   +PL   
Sbjct: 2   TTSCEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGK-VFDSSYNRGKPLTFR 60

Query: 102 LGKEK-----KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG---SFSFPNVSPMADLV 153
           +G  +      +    + G+  M  G    L +  EL YG  G         + P + L+
Sbjct: 61  IGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLL 120

Query: 154 YEVVLIG 160
           +++  IG
Sbjct: 121 FDIEYIG 127

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 63.2 bits (154), Expect = 9e-12
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 172 DMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAV 231
              V++ +  ++  K  GN  FK +  E A+++Y   + Y+ +                V
Sbjct: 213 LKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV-EGSRAAAEDADGAKLQPV 271

Query: 232 KNPCHLNMAACLLKLKRYEEAIGQCSLV 259
              C LN+ AC LK+  ++ A+  C   
Sbjct: 272 ALSCVLNIGACKLKMSDWQGAVDSCLEA 299

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 59.1 bits (144), Expect = 1e-11
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 48  EVLHEKVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEK 106
           EV+   V    I  G G   P       +HY    E+ + KFD +     P +  +G  +
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQ-KFDSSVDRGSPFQCNIGVGQ 60

Query: 107 KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162
             + G  +G+  +  GE A L +     YG  G      + P + LV++V L+  +
Sbjct: 61  V-IKGWDVGIPKLSVGEKARLTIPGPYAYGPRG--FPGLIPPNSTLVFDVELLKVN 113

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 5/109 (4%)

Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K + + G+G++ P      ++HY+    + + KFD +    +P    LGK +  +   
Sbjct: 21  VLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGK-KFDSSHDRNEPFVFSLGKGQV-IKAW 78

Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
            IGV++MK GE   L    E  YG  G  S P +   A L +E+ L+ F
Sbjct: 79  DIGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 125

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 13/127 (10%)

Query: 37  GDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWL--E 94
           G   P+ + ++EVL +            +K        +HY  + E     F  T     
Sbjct: 6   GALIPEPEVKIEVLQKP-------FICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNN 58

Query: 95  QQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVY 154
            QP+   LG   + + G   G+  M  GE   L +   LGYGKEG      + P + L++
Sbjct: 59  GQPIWFTLGI-LEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGK---GKIPPESTLIF 114

Query: 155 EVVLIGF 161
            + L+  
Sbjct: 115 NIDLLEI 121

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 56.8 bits (138), Expect = 6e-11
 Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 8/107 (7%)

Query: 62  GHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEK--KEMTGLAIGVSSM 119
           G   K  K     +HY    E    +FD +  + QP    LG  +  K   G   G+  M
Sbjct: 1   GSPIKSRKGDVLHMHYTGKLEDGT-EFDSSLPQNQPFVFSLGTGQVIK---GWDQGLLGM 56

Query: 120 KAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 166
             GE   L +  ELGYG+ G  + P +   A LV+EV L+  +   E
Sbjct: 57  CEGEKRKLVIPSELGYGERG--APPKIPGGATLVFEVELLKIERRTE 101

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 5/109 (4%)

Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K + + G+G++ P      ++HY+    + + KFD +    +P    LGK  + +   
Sbjct: 37  VLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGK-KFDSSHDRNEPFVFSLGK-GQVIKAW 94

Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
            IGV++MK GE   L    E  YG  G  S P +   A L +E+ L+ F
Sbjct: 95  DIGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 141

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 57  QIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGV 116
           Q+++ G G+ P    T  ++Y+      + +FD+++   +PL   L      + G   G+
Sbjct: 126 QVVEAGKGEAPKDSDTVVVNYKGTLIDGK-EFDNSYTRGEPLSFRLD---GVIPGWTEGL 181

Query: 117 SSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIG 160
            ++K G    L +  EL YGK G    P + P + LV++V L+ 
Sbjct: 182 KNIKKGGKIKLVIPPELAYGKAGV---PGIPPNSTLVFDVELLD 222

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 9/117 (7%)

Query: 47  VEVLHEKVTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKE 105
              +  ++ K+++  G G  KP       +HY       + +FD +    +P +  LG  
Sbjct: 19  PGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGK-QFDSSRSRGKPFQFTLGAG 77

Query: 106 K--KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIG 160
           +  K   G   GV++M  GE AL  + ++L YG+ G    P + P A LV+EV L+ 
Sbjct: 78  EVIK---GWDQGVATMTLGEKALFTIPYQLAYGERG--YPPVIPPKATLVFEVELLA 129

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 17/82 (20%)

Query: 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPC 235
                AA   K  GNA +K++  E+A   Y+ AI     +  F                 
Sbjct: 2   NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITF----------------- 44

Query: 236 HLNMAACLLKLKRYEEAIGQCS 257
           + N AA   + K++ E +  C 
Sbjct: 45  YNNKAAVYFEEKKFAECVQFCE 66

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 17/76 (22%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
            +++K  GN+LFK+    EA+  Y+  I     + +                  + N A 
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVG-----------------YSNKAM 46

Query: 242 CLLKLKRYEEAIGQCS 257
            L+KL  Y +AI  C 
Sbjct: 47  ALIKLGEYTQAIQMCQ 62

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 53.0 bits (128), Expect = 3e-09
 Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 16/113 (14%)

Query: 54  VTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLA 113
           +  + + EG G +     T  +HY  W    + KFD +     P   VLG       G+ 
Sbjct: 30  LKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQ-KFDSSKDRNDPFAFVLGG------GMV 82

Query: 114 I-----GVSSMKAGEHALLHVGWELGYGKEGSFSFPNV-SPMADLVYEVVLIG 160
           I     GV  MK G    L +  +LGYG  G+     V  P A LV+EV L+ 
Sbjct: 83  IKGWDEGVQGMKVGGVRRLTIPPQLGYGARGA---GGVIPPNATLVFEVELLD 132

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 14/143 (9%)

Query: 23  TEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAE 82
           T +   +      +        S V      +  + + EG G +     T  +HY  W  
Sbjct: 75  TPEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT 134

Query: 83  STRHKFDDTWLEQQPLEMVLGKEKKEMTGLAI-----GVSSMKAGEHALLHVGWELGYGK 137
             + KFD +     P   VLG       G+ I     GV  MK G    L +  +LGYG 
Sbjct: 135 DGQ-KFDSSKDRNDPFAFVLGG------GMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGA 187

Query: 138 EGSFSFPNVSPMADLVYEVVLIG 160
            G  +   + P A LV+EV L+ 
Sbjct: 188 RG--AAGVIPPNATLVFEVELLD 208

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 52.8 bits (127), Expect = 7e-09
 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 7/132 (5%)

Query: 57  QIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIG 115
           Q I  G G++ P+    C +HY          FD +    +P      +  K   G    
Sbjct: 42  QRIARGSGKRAPAIDDKCEVHYTGRLRDGT-VFDSSRERGKPTTFRPNEVIK---GWTEA 97

Query: 116 VSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTV 175
           +  M+ G+   L + ++L YG  G      + P + L ++V LI   +  +G+   ++  
Sbjct: 98  LQLMREGDRWRLFIPYDLAYGVTG--GGGMIPPYSPLEFDVELISIKDGGKGRTAEEVDE 155

Query: 176 EERIGAADRRKM 187
             R    DR  M
Sbjct: 156 ILRKAEEDREDM 167

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 57  QIIKEGHGQKPSKYSTCFLHYRAW-AESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIG 115
           ++I  G+G KP K  T  + Y     + T   FD T    +P    +    + + G    
Sbjct: 111 KVINSGNGVKPGKSDTVTVEYTGRLIDGTV--FDSTEKTGKPATFQVS---QVIPGWTEA 165

Query: 116 VSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIG 160
           +  M AG    ++V   L YG         + P   L++++ LI 
Sbjct: 166 LQLMPAGSTWEIYVPSGLAYGPRS--VGGPIGPNETLIFKIHLIS 208

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 17/76 (22%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
           A + K  GN  +K++  + A++ Y+ A      +  +                   N AA
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY-----------------ITNQAA 46

Query: 242 CLLKLKRYEEAIGQCS 257
              +   Y +    C 
Sbjct: 47  VYFEKGDYNKCRELCE 62

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 17/85 (20%)

Query: 173 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVK 232
           +  EE    A+R K +GN   K E  E A+  Y  AI     + ++              
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY-------------- 48

Query: 233 NPCHLNMAACLLKLKRYEEAIGQCS 257
                N AA   KL  Y  A+  C 
Sbjct: 49  ---FCNRAAAYSKLGNYAGAVQDCE 70

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 17/76 (22%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
           A   K  GN  FK+     AM+ Y  A+    ++              A+    + N AA
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN--------------AI---LYSNRAA 55

Query: 242 CLLKLKRYEEAIGQCS 257
           CL KL  ++ A+  C 
Sbjct: 56  CLTKLMEFQRALDDCD 71

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 9/107 (8%)

Query: 57  QIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGV 116
             +  G G KP       + Y       +  FD +    QP    L      ++G    +
Sbjct: 122 TELTPGTGPKPDANGRVEVRYVGRLPDGK-IFDQS---TQPQWFRLD---SVISGWTSAL 174

Query: 117 SSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE 163
            +M  G    L +  +  YG EG  +   + P   LV+E+ LI   +
Sbjct: 175 QNMPTGAKWRLVIPSDQAYGAEG--AGDLIDPFTPLVFEIELIAVSQ 219

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 17/82 (20%)

Query: 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPC 235
             +  +A   K  GN LF   K  EA   Y  AI       ++                 
Sbjct: 3   HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY----------------- 45

Query: 236 HLNMAACLLKLKRYEEAIGQCS 257
           + N A C LK+++ E+A+  C 
Sbjct: 46  YTNRALCYLKMQQPEQALADCR 67

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 17/76 (22%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
            +  K  GN       +++A+Q Y  AI     + +                  + N +A
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVL-----------------YSNRSA 46

Query: 242 CLLKLKRYEEAIGQCS 257
              K   Y++A     
Sbjct: 47  AYAKKGDYQKAYEDGC 62

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 17/76 (22%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
           A+  +++G   F +     A++ Y   I    +D                    + N AA
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG-----------------YSNRAA 46

Query: 242 CLLKLKRYEEAIGQCS 257
            L KL  + EAI  C+
Sbjct: 47  ALAKLMSFPEAIADCN 62

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 13/80 (16%)

Query: 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHL 237
           ++   ++       L ++ +  +A  +YE  +        +                   
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEY-------------TVRSKE 276

Query: 238 NMAACLLKLKRYEEAIGQCS 257
            +  C  K ++  EAI  CS
Sbjct: 277 RICHCFSKDEKPVEAIRICS 296

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 17/89 (19%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLFGKYR------DM 227
            ++    G  L    +L +A+ Q+  A+    D+++        F   GK +        
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 228 ALAVK--NPC-HLNMAACLLKLKRYEEAI 253
            +A+K       L     LLK  + +EA 
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAE 91

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 8/65 (12%), Positives = 13/65 (20%), Gaps = 17/65 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
               F       A+   +  +     D                        A C +K   
Sbjct: 127 ALDAFDGADYTAAITFLDKILEVCVWDAEL-----------------RELRAECFIKEGE 169

Query: 249 YEEAI 253
             +AI
Sbjct: 170 PRKAI 174

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 8/65 (12%), Positives = 19/65 (29%), Gaps = 5/65 (7%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
               ++    E ++ +    +    D         +       K    +  A  L++  R
Sbjct: 195 STLYYQLGDHELSLSEVRECLKLDQDHKRC-----FAHYKQVKKLNKLIESAEELIRDGR 249

Query: 249 YEEAI 253
           Y +A 
Sbjct: 250 YTDAT 254

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 17/82 (20%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYRD--------MALAVK 232
           G   ++  K ++A + ++            ++G     Q  G Y            + + 
Sbjct: 25  GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84

Query: 233 NP-CHLNMAACLLKLKRYEEAI 253
            P    + A C L+L   + A 
Sbjct: 85  EPRFPFHAAECHLQLGDLDGAE 106

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 46.7 bits (112), Expect = 3e-07
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 15/65 (23%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G AL+  E+ EEA+  Y   I  + D++                       A  L  ++ 
Sbjct: 47  GKALYNLERYEEAVDCYNYVINVIEDEY----------NKDV-----WAAKADALRYIEG 91

Query: 249 YEEAI 253
            E   
Sbjct: 92  KEVEA 96

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 44.4 bits (106), Expect = 3e-06
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 17/65 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G   +      E++  +E AI    ++            +        L     L  L+R
Sbjct: 13  GVLQYDAGNYTESIDLFEKAIQLDPEE------------SKY-----WLMKGKALYNLER 55

Query: 249 YEEAI 253
           YEEA+
Sbjct: 56  YEEAV 60

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 13/80 (16%)

Query: 178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHL 237
           ++   ++       L ++ +  +A  +YE  +        +                   
Sbjct: 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEY-------------TVRSKE 299

Query: 238 NMAACLLKLKRYEEAIGQCS 257
            +  C  K ++  EAI  CS
Sbjct: 300 RICHCFSKDEKPVEAIRVCS 319

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 19/96 (19%)

Query: 176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLFGKYR-- 225
            + +   ++    G  L    +L +A+ Q+  A+    D+++        F   GK +  
Sbjct: 20  FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA 79

Query: 226 ----DMALAVKNP----CHLNMAACLLKLKRYEEAI 253
                  + +         L     LLK  + +EA 
Sbjct: 80  LPDLTKVIQL-KMDFTAARLQRGHLLLKQGKLDEAE 114

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 14/81 (17%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMAL-----AVK-NP----CHLN 238
           G  L  E    ++M   E  +  +G   +    G+  D AL     AV  +P     +  
Sbjct: 10  GVDLGTENLYFQSMADVEKHLE-LGKKLLAA--GQLAD-ALSQFHAAVDGDPDNYIAYYR 65

Query: 239 MAACLLKLKRYEEAIGQCSLV 259
            A   L + + + A+   + V
Sbjct: 66  RATVFLAMGKSKAALPDLTKV 86

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 8/65 (12%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G   F+  + + A + +  A+  +          K+         P   N+     KLK+
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW--------EPLLNNLGHVCRKLKK 251

Query: 249 YEEAI 253
           Y EA+
Sbjct: 252 YAEAL 256

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 17/82 (20%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDD--------FMFQLFGKYR------DMALAVK-- 232
           G+   K +K  EA+  +  A+  +  +        ++  L G +         AL ++  
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302

Query: 233 -NPCHLNMAACLLKLKRYEEAI 253
                  +  C+       EA 
Sbjct: 303 DTFSVTMLGHCIEMYIGDSEAY 324

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 19/83 (22%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLFGKYR------DMALAVKNP 234
           G++   E + ++AM  Y  A   M             + L    +        AL++  P
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI-AP 190

Query: 235 ----CHLNMAACLLKLKRYEEAI 253
                   +     +   ++ A 
Sbjct: 191 EDPFVMHEVGVVAFQNGEWKTAE 213

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 48.7 bits (117), Expect = 5e-07
 Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 17/65 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G   F +     A++ Y   I    +D            A       + N AA L KL  
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIKRAPED------------ARG-----YSNRAAALAKLMS 188

Query: 249 YEEAI 253
           + EAI
Sbjct: 189 FPEAI 193

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 44.9 bits (107), Expect = 9e-06
 Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 24/71 (33%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP---CHLNMAACLLK 245
           GN  +K  + +EA++ Y  A                        +       N AA   +
Sbjct: 12  GNKFYKARQFDEAIEHYNKAWEL---------------------HKDITYLNNRAAAEYE 50

Query: 246 LKRYEEAIGQC 256
              YE AI   
Sbjct: 51  KGEYETAISTL 61

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 17/66 (25%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
             A +++ + E A+     A+             + R+M        +  ++    ++  
Sbjct: 45  AAAEYEKGEYETAISTLNDAVE------------QGREMRAD-----YKVISKSFARIGN 87

Query: 249 YEEAIG 254
               +G
Sbjct: 88  AYHKLG 93

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 46.8 bits (112), Expect = 5e-07
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 17/76 (22%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
           A   K  GN  F++    +AM+ Y  AI     D                    + N AA
Sbjct: 16  ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL-----------------YSNRAA 58

Query: 242 CLLKLKRYEEAIGQCS 257
           C  KL  ++ A+  C 
Sbjct: 59  CYTKLLEFQLALKDCE 74

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 17/88 (19%)

Query: 170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMAL 229
           R +   +  +  A+  K   N  FK +  E A++ Y  AI     + ++           
Sbjct: 1   RDEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY----------- 49

Query: 230 AVKNPCHLNMAACLLKLKRYEEAIGQCS 257
                 + N +   L+ + Y  A+G  +
Sbjct: 50  ------YGNRSLAYLRTECYGYALGDAT 71

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 47.6 bits (114), Expect = 9e-07
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 15/65 (23%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G  L+++++ EEA Q+   A               Y + +         N+    L++K+
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTL----------YPERSRV-----FENLGLVSLQMKK 156

Query: 249 YEEAI 253
             +A 
Sbjct: 157 PAQAK 161

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 17/65 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G    + +K  +A + +E ++               R+          L MA  L K + 
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLN------------RNQPSV-----ALEMADLLYKERE 190

Query: 249 YEEAI 253
           Y  A 
Sbjct: 191 YVPAR 195

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 21/84 (25%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYRD------MALAVK 232
           G    +    E+A      A+        A+  +    +FQ   + +        ALA  
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALA--VVFQTEMEPKLADEEYRKALASD 101

Query: 233 --NP-CHLNMAACLLKLKRYEEAI 253
             N     N    L + KRYEEA 
Sbjct: 102 SRNARVLNNYGGFLYEQKRYEEAY 125

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 17/76 (22%)

Query: 182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 241
           +D+ K +GNA    ++  +A+  Y  A++    + ++                   N AA
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIY-----------------LSNRAA 53

Query: 242 CLLKLKRYEEAIGQCS 257
                 ++E+A     
Sbjct: 54  AYSASGQHEKAAEDAE 69

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 16/66 (24%)

Query: 189 GNALFKE-EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK 247
           G  L     +  E+M  ++ A+A             Y    +A     +LN   C  K  
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALADPT----------YPTPYIA-----NLNKGICSAKQG 127

Query: 248 RYEEAI 253
           ++  A 
Sbjct: 128 QFGLAE 133

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 7/65 (10%), Positives = 16/65 (24%), Gaps = 17/65 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G    K+ +   A    + ++A                   A        +A   +   +
Sbjct: 120 GICSAKQGQFGLAEAYLKRSLAAQ------------PQFPPA-----FKELARTKMLAGQ 162

Query: 249 YEEAI 253
             +A 
Sbjct: 163 LGDAD 167

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 17/82 (20%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLFGKYRD--------MALAVK 232
               + + ++EEA   +     Y   +         ++Q+  +++          AL   
Sbjct: 43  AYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102

Query: 233 NPC-HLNMAACLLKLKRYEEAI 253
           +     +   C L+LK   +A 
Sbjct: 103 DYTPVFHTGQCQLRLKAPLKAK 124

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 17/65 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           GN  F  +   EA++ Y+ AI    ++ +F                 + N++AC +    
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIELDPNEPVF-----------------YSNISACYISTGD 74

Query: 249 YEEAI 253
            E+ I
Sbjct: 75  LEKVI 79

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 23/85 (27%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYRDMALAV------K 232
           G   F  +  + A + ++ A          Y  +    +    GK+   + A       K
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA--CLLYKQGKF-TESEAFFNETKLK 373

Query: 233 NP----CHLNMAACLLKLKRYEEAI 253
            P         A  L     ++ AI
Sbjct: 374 FPTLPEVPTFFAEILTDRGDFDTAI 398

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 35/99 (35%)

Query: 189 GNALFKEEKLEEAMQQYEMAI------------------------AYMGDDFMFQLFGKY 224
              L      + A++QY++A                              D       K+
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444

Query: 225 RDMAL-----AVK-NP----CHLNMAACLLKLKRYEEAI 253
            + A+     A + +P      + +A   L++++ +EAI
Sbjct: 445 -NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAI 482

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 23/85 (27%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYR------DMALAVK 232
              L  +E  +E  + ++ A+         Y   G   M+ +   Y+        A ++ 
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQ--MYFILQDYKNAKEDFQKAQSL- 339

Query: 233 NP----CHLNMAACLLKLKRYEEAI 253
           NP     ++ +A  L K  ++ E+ 
Sbjct: 340 NPENVYPYIQLACLLYKQGKFTESE 364

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 18/65 (27%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G   F +  L +A    + +I                   L      ++ +A  L   + 
Sbjct: 250 GIFHFLKNNLLDAQVLLQESIN------------------LHPTPNSYIFLALTLADKEN 291

Query: 249 YEEAI 253
            +E  
Sbjct: 292 SQEFF 296

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.0 bits (110), Expect = 4e-06
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 23/85 (27%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYR------DMALAVK 232
           GN    +E  +EA   +E A+         +  +G   +     + +        A+ + 
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL--EQPKLALPYLQRAVEL- 154

Query: 233 NP----CHLNMAACLLKLKRYEEAI 253
           N            CL      +EA+
Sbjct: 155 NENDTEARFQFGMCLANEGMLDEAL 179

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 23/85 (27%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYRDMAL-----AVK- 232
           G  L K E+ + A+   + A+        A    G        G   D AL       + 
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG--MCLANEGML-DEALSQFAAVTEQ 188

Query: 233 NP----CHLNMAACLLKLKRYEEAI 253
           +P       N        +  E+A+
Sbjct: 189 DPGHADAFYNAGVTYAYKENREKAL 213

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 23/85 (27%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYR------DMALAVK 232
            N L    +LE A+  Y+ A+        AY   G   ++ +   Y+      + AL   
Sbjct: 64  ANLLSSVNELERALAFYDKALELDSSAATAYYGAG--NVYVVKEMYKEAKDMFEKALRA- 120

Query: 233 NP----CHLNMAACLLKLKRYEEAI 253
                     +   L+KL++ + A+
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLAL 145

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 39.0 bits (92), Expect = 6e-04
 Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 17/65 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
                +    E+A + +  AI    +D +                  ++N A  L  +  
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAI-----------------PYINFANLLSSVNE 72

Query: 249 YEEAI 253
            E A+
Sbjct: 73  LERAL 77

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 17/77 (22%)

Query: 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 240
           +A   K  GN LF   K  EA   Y  AI       ++                 + N A
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY-----------------YTNRA 45

Query: 241 ACLLKLKRYEEAIGQCS 257
            C LK+++ E+A+  C 
Sbjct: 46  LCYLKMQQPEQALADCR 62

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 43.9 bits (105), Expect = 5e-06
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 23/85 (27%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYRDMAL-----AVK- 232
           GNA +K+   +EA++ Y+ A+        A+  +G+ +  Q  G Y D A+     A++ 
Sbjct: 42  GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ--GDY-DEAIEYYQKALEL 98

Query: 233 NP----CHLNMAACLLKLKRYEEAI 253
           +P       N+     K   Y+EAI
Sbjct: 99  DPRSAEAWYNLGNAYYKQGDYDEAI 123

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 43.5 bits (104), Expect = 8e-06
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 23/85 (27%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYR------DMALAVK 232
           GNA +K+   +EA++ Y+ A+        A+  +G+ +  Q  G Y         AL + 
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELD 65

Query: 233 NP----CHLNMAACLLKLKRYEEAI 253
            P       N+     K   Y+EAI
Sbjct: 66  -PRSAEAWYNLGNAYYKQGDYDEAI 89

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDF---MFQLFGKYRDMALAVKNPCHLNMAACLLK 245
           G   ++ EK + A++  + A+  +  +       L  +++  A  V      N+A    K
Sbjct: 78  GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLY----NIAFMYAK 133

Query: 246 LKRYEEAI 253
            + +++A 
Sbjct: 134 KEEWKKAE 141

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 10/83 (12%), Positives = 21/83 (25%), Gaps = 19/83 (22%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLF--------GKYRDMAL-----AVK-NP 234
            ++   E + ++A+  Y  A        +  LF        G    +A      +     
Sbjct: 414 AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNI-LLANEYLQSSYALFQ 472

Query: 235 ----CHLNMAACLLKLKRYEEAI 253
                   +          + AI
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAI 495

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G   F +  ++ A+  ++ A+  +      +     +  A         N+     KLK 
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNE-----KPWAAT-----WANLGHAYRKLKM 531

Query: 249 YEEAI 253
           Y+ AI
Sbjct: 532 YDAAI 536

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 17/65 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G+A  K +  + A+      +    +D            A       H  +A   L  K 
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLLLSTND------------ANV-----HTAIALVYLHKKI 565

Query: 249 YEEAI 253
              AI
Sbjct: 566 PGLAI 570

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 44.8 bits (107), Expect = 6e-06
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 22/84 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAI-------AY--MGDDFMFQLFGKYRDMAL-----AVK-N 233
           G       + ++A    + A+           + + ++    G+  D AL     A++  
Sbjct: 125 GLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSM--GRL-DEALAQYAKALEQA 181

Query: 234 P----CHLNMAACLLKLKRYEEAI 253
           P      +  A+ LL   + EEA 
Sbjct: 182 PKDLDLRVRYASALLLKGKAEEAA 205

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 12/94 (12%), Positives = 22/94 (23%), Gaps = 30/94 (31%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MG---------DDFMFQLFGKYR---- 225
                K   +  A++  +  +         Y  +           +   +  G       
Sbjct: 46  ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105

Query: 226 --DMALAVKNP----CHLNMAACLLKLKRYEEAI 253
               A  V NP     HL        L   ++A 
Sbjct: 106 VLKDAERV-NPRYAPLHLQRGLVYALLGERDKAE 138

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 25/69 (36%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP----CHLNMAACLL 244
           G  L+   + + A+  +E A+                       NP        +A   L
Sbjct: 12  GVQLYALGRYDAALTLFERALKE---------------------NPQDPEALYWLARTQL 50

Query: 245 KLKRYEEAI 253
           KL     A+
Sbjct: 51  KLGLVNPAL 59

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.6 bits (109), Expect = 6e-06
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 19/83 (22%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLFGKYRDMAL-----AVK-NP 234
           GN L +    + A+  Y  A++   +  +        +   G   D+A+     A++  P
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI-DLAIDTYRRAIELQP 268

Query: 235 ----CHLNMAACLLKLKRYEEAI 253
                + N+A  L +     EA 
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAE 291

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.6 bits (109), Expect = 7e-06
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 19/83 (22%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLFGKYR------DMALAVKNP 234
            NAL ++  + EA   Y  A+                 +  G           AL V  P
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FP 336

Query: 235 ----CHLNMAACLLKLKRYEEAI 253
                H N+A+ L +  + +EA+
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEAL 359

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 23/85 (27%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYR------DMALAVK 232
           GN L    +LEEA   Y  AI        A+  +G  F  Q  G+        + A+ + 
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ--GEIWLAIHHFEKAVTL- 198

Query: 233 NP----CHLNMAACLLKLKRYEEAI 253
           +P     ++N+   L + + ++ A+
Sbjct: 199 DPNFLDAYINLGNVLKEARIFDRAV 223

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 19/83 (22%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLFGKYRDMALAV------KNP 234
             AL     +E A+Q Y  A+ Y  D +        + +  G+  + A A         P
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL-EEAKACYLKAIETQP 166

Query: 235 ----CHLNMAACLLKLKRYEEAI 253
                  N+            AI
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAI 189

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 23/85 (27%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYR------DMALAVK 232
           G     + ++  A+  +E A+        AY  +G+         +         AL++ 
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA--RIFDRAVAAYLRALSL- 232

Query: 233 NP----CHLNMAACLLKLKRYEEAI 253
           +P     H N+A    +    + AI
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAI 257

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 19/83 (22%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDD--------FMFQLFGKYR------DMALAVKNP 234
           GN   +  +L+EA++ Y  A+    D               G           AL   NP
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY-NP 132

Query: 235 ----CHLNMAACLLKLKRYEEAI 253
                  ++   L  L R EEA 
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAK 155

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 19/83 (22%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLFGKYRDMAL-----AVK-NP 234
            +  ++    E A +          D+               +  D +      A+K NP
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRL-DRSAHFSTLAIKQNP 64

Query: 235 ----CHLNMAACLLKLKRYEEAI 253
                + N+     +  + +EAI
Sbjct: 65  LLAEAYSNLGNVYKERGQLQEAI 87

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.0 bits (105), Expect = 1e-05
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 23/85 (27%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYR------DMALAVK 232
           G    + +K + A+                   +G        G++        +AL + 
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG--VALDNLGRFDEAIDSFKIALGL- 139

Query: 233 NP----CHLNMAACLLKLKRYEEAI 253
            P     H  +A    ++ R+EEA+
Sbjct: 140 RPNEGKVHRAIAFSYEQMGRHEEAL 164

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 23/85 (27%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYRDMAL-----AVK- 232
           G A  K   ++   +  E ++            +G  ++     KY D+A+       + 
Sbjct: 49  GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV--QKY-DLAVPLLIKVAEA 105

Query: 233 NP----CHLNMAACLLKLKRYEEAI 253
           NP        +   L  L R++EAI
Sbjct: 106 NPINFNVRFRLGVALDNLGRFDEAI 130

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 42.4 bits (101), Expect = 4e-05
 Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 23/85 (27%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYR------DMALAVK 232
           G +  K  +  +A+   E               +G    +   G         + +LA  
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLG--IAYVKTGAVDRGTELLERSLADA 72

Query: 233 NP----CHLNMAACLLKLKRYEEAI 253
            P        +    +++++Y+ A+
Sbjct: 73  -PDNVKVATVLGLTYVQVQKYDLAV 96

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 24/68 (35%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP---CHLNMAACLLK 245
           GN  F+ +K ++A++ Y  A+                             + N++AC + 
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALEL---------------------KEDPVFYSNLSACYVS 51

Query: 246 LKRYEEAI 253
           +   ++ +
Sbjct: 52  VGDLKKVV 59

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 19/83 (22%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYRDMALAV------KNP 234
           G   F  +  ++A + ++ A          Y+    +     K+ D    +      K P
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKF-DDCETLFSEAKRKFP 369

Query: 235 ----CHLNMAACLLKLKRYEEAI 253
                    A  L     +++A+
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKAL 392

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 26/91 (28%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AYM---------GDDFMFQLFGKYR------ 225
              L  +   ++A++QY++AI         Y+                    +       
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438

Query: 226 DMALAVKNPC---HLNMAACLLKLKRYEEAI 253
           + A  +        + +A   L+ +  +EAI
Sbjct: 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAI 469

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 5/65 (7%), Positives = 16/65 (24%), Gaps = 17/65 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
              +       E    ++ A+                + +       + +       L+ 
Sbjct: 277 ALIMADRNDSTEYYNYFDKALK------------LDSNNSSV-----YYHRGQMNFILQN 319

Query: 249 YEEAI 253
           Y++A 
Sbjct: 320 YDQAG 324

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 9/68 (13%), Positives = 16/68 (23%), Gaps = 18/68 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G   F +     A +  + AI                   L  +   ++ MA  +     
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIE------------------LFPRVNSYIYMALIMADRND 285

Query: 249 YEEAIGQC 256
             E     
Sbjct: 286 STEYYNYF 293

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 42.4 bits (101), Expect = 2e-05
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 23/85 (27%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYRDMAL-----AVK- 232
           GNA +K+   +EA++ Y+ A+        A+  +G+ +  Q  G Y D A+     A++ 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ--GDY-DEAIEYYQKALEL 72

Query: 233 NP----CHLNMAACLLKLKRYEEAI 253
           +P       N+     K   Y+EAI
Sbjct: 73  DPNNAEAWYNLGNAYYKQGDYDEAI 97

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 23/85 (27%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYRDMALAV------K 232
           G  L K+ +   A+QQY+ A+         Y  +G    F   G +  +A+         
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGS--YFYNKGNF-PLAIQYMEKQIRP 137

Query: 233 NP----CHLNMAACLLKLKRYEEAI 253
                     +       K Y +A 
Sbjct: 138 TTTDPKVFYELGQAYYYNKEYVKAD 162

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 17/65 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
            + LFK     EA++ +                     +        +   A C  +L +
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLE---------AKKYNSPYI--------YNRRAVCYYELAK 52

Query: 249 YEEAI 253
           Y+ A 
Sbjct: 53  YDLAQ 57

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 5/84 (5%)

Query: 173 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVK 232
           M   + +  A     D        + +EA      A+         + F      A    
Sbjct: 2   MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAF--- 58

Query: 233 NPCHLNMAACLLKLKRYEEAIGQC 256
             CH  +A  L  L+ ++EA+   
Sbjct: 59  --CHAGLAEALAGLRSFDEALHSA 80

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 12/83 (14%), Positives = 22/83 (26%), Gaps = 19/83 (22%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLFGKYR------DMALAVKNP 234
                   +  E       A+    +D         ++ L   Y         A+ +  P
Sbjct: 145 DFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-RP 203

Query: 235 ----CHLNMAACLLKLKRYEEAI 253
                   + A L    R +EA+
Sbjct: 204 DDAQLWNKLGATLANGNRPQEAL 226

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 25/69 (36%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP----CHLNMAACLL 244
           G  L    + +EA+  Y  A+                       NP       NMA    
Sbjct: 213 GATLANGNRPQEALDAYNRALDI---------------------NPGYVRVMYNMAVSYS 251

Query: 245 KLKRYEEAI 253
            + +Y+ A 
Sbjct: 252 NMSQYDLAA 260

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 13/83 (15%), Positives = 22/83 (26%), Gaps = 19/83 (22%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLFGKYRDMAL-----AVK-NP 234
           G ++ K   L EA   +E       +                K   +A+     A   +P
Sbjct: 28  GLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKD-GLAIIALNHARMLDP 86

Query: 235 ----CHLNMAACLLKLKRYEEAI 253
                H  +A           A+
Sbjct: 87  KDIAVHAALAVSHTNEHNANAAL 109

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 23/85 (27%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYR------DMALAVK 232
           G           A   +  A+         +  +G        G +       D  L + 
Sbjct: 50  GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLG--IYLTQAGNFDAAYEAFDSVLEL- 106

Query: 233 NP----CHLNMAACLLKLKRYEEAI 253
           +P     HLN    L    R + A 
Sbjct: 107 DPTYNYAHLNRGIALYYGGRDKLAQ 131

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 17/65 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G        L+ A   +++A+A    +F+                  H      L  L +
Sbjct: 222 GKYYLSLGDLDSATALFKLAVANNVHNFV-----------------EHRYALLELSLLGQ 264

Query: 249 YEEAI 253
            ++ +
Sbjct: 265 DQDDL 269

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 19/83 (22%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDD--------FMFQLFGKYR------DMALAVKNP 234
            + L ++ KL+EA+  Y+ AI                 +     +        A+ + NP
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-NP 108

Query: 235 ----CHLNMAACLLKLKRYEEAI 253
                H N+A+         EAI
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAI 131

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 17/65 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
            N   ++  +EEA++ Y  A+    +                     H N+A+ L +  +
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAA-----------------AHSNLASVLQQQGK 58

Query: 249 YEEAI 253
            +EA+
Sbjct: 59  LQEAL 63

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 25/69 (36%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP----CHLNMAACLL 244
           G  L    + EEA+  Y  A+                        P       N+    +
Sbjct: 258 GATLANGNQSEEAVAAYRRALEL---------------------QPGYIRSRYNLGISCI 296

Query: 245 KLKRYEEAI 253
            L  + EA+
Sbjct: 297 NLGAHREAV 305

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 10/83 (12%), Positives = 22/83 (26%), Gaps = 19/83 (22%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLFGKYRDMAL-----AVK-NP 234
           G    +E  L  A+  +E A+                     +   +A+      ++  P
Sbjct: 71  GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE-LLAISALRRCLELKP 129

Query: 235 ----CHLNMAACLLKLKRYEEAI 253
                 + +A          +A 
Sbjct: 130 DNQTALMALAVSFTNESLQRQAC 152

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 17/65 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G       + ++A+  +  A++   +D             L         + A L    +
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPND------------YLL-----WNKLGATLANGNQ 266

Query: 249 YEEAI 253
            EEA+
Sbjct: 267 SEEAV 271

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 25/69 (36%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP----CHLNMAACLL 244
           G  L   ++ EEA++ Y  A+                        P       N+    +
Sbjct: 254 GATLANGDRSEEAVEAYTRALEI---------------------QPGFIRSRYNLGISCI 292

Query: 245 KLKRYEEAI 253
            L  Y EA+
Sbjct: 293 NLGAYREAV 301

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 5/65 (7%), Positives = 16/65 (24%), Gaps = 17/65 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           G    + E  + A+   +  +    ++                     + +A        
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNNL-----------------KALMALAVSYTNTSH 148

Query: 249 YEEAI 253
            ++A 
Sbjct: 149 QQDAC 153

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 9/83 (10%), Positives = 18/83 (21%), Gaps = 19/83 (22%)

Query: 189 GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYR------DMALAVKNP 234
           G      E ++  +     A         A    D   Q     +        A  +  P
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL-TP 375

Query: 235 ----CHLNMAACLLKLKRYEEAI 253
                  +       L+  +  +
Sbjct: 376 EQVVAIASNGGGKQALETVQRLL 398

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 17/65 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
           GNA +K+   +EA++ Y+ A+    ++            A A       N+     K   
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPNN------------AEA-----WYNLGNAYYKQGD 58

Query: 249 YEEAI 253
           Y+EAI
Sbjct: 59  YDEAI 63

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
            +A  +  +  +A+  +   IA +  D     +    D    + +     +A    K + 
Sbjct: 11  VSAAIEAGQNGQAVSYFRQTIA-LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69

Query: 249 YEEAI 253
           Y++A 
Sbjct: 70  YDKAY 74

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 17/65 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
                K +    A+  +E  +                D         + ++     +L R
Sbjct: 14  AQEHLKHDNASRALALFEELVE------------TDPDYVGT-----YYHLGKLYERLDR 56

Query: 249 YEEAI 253
            ++AI
Sbjct: 57  TDDAI 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	100.0
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	100.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.97
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.94
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.94
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.94
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.94
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.94
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.93
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.93
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.93
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.93
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.93
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.93
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.93
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.93
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.92
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.92
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.92
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.92
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.92
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.92
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.92
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.91
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	99.88
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.88
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	99.85
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.85
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	99.85
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	99.83
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.7
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.68
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.67
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.64
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.64
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.63
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.63
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.62
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.53
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.37
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	99.2
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.15
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.91
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.9
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.84
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.81
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.6
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.34
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.33
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.07
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	98.06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.9
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.88
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.87
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.87
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.86
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.86
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.83
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.79
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.79
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.75
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.74
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.72
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.7
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.69
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.68
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.68
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.68
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.65
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.63
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.6
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.59
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.59
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.57
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.56
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.52
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.51
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.5
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.5
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.49
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.48
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.47
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.45
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.45
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.45
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.44
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.44
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.41
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.37
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.36
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.33
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.32
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.28
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.28
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.26
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.25
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.22
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.2
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.2
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.19
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.19
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.18
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.16
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.14
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.1
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.09
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.08
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.07
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.07
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.06
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.05
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.05
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.04
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.04
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.02
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.01
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.0
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.98
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.98
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.98
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	96.95
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	96.95
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.93
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.92
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	96.92
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	96.91
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	96.9
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.87
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.86
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.86
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.85
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.84
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.8
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.8
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	96.8
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.78
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.78
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	96.76
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	96.73
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	96.72
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.72
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	96.7
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	96.69
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.67
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.66
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	96.65
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.65
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.64
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.63
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	96.6
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	96.53
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	96.52
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.52
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	96.48
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	96.46
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.45
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.42
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	96.4
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	96.4
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	96.35
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	96.33
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.3
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	96.3
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	96.29
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	96.28
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	96.27
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	96.24
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	96.24
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.23
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	96.22
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.2
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.19
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	96.18
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	96.16
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.16
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	96.16
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.12
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	96.05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	96.02
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	96.0
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	95.98
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	95.96
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	95.95
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	95.95
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	95.95
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	95.94
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	95.93
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	95.92
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	95.75
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	95.73
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	95.7
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	95.65
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	95.54
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	95.47
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	95.36
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.09
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	95.07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	94.96
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	94.87
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	94.86
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	94.72
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	94.67
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	94.6
2l6j_A	111	TPR repeat-containing protein associated with HSP;	94.58
2kat_A	115	Uncharacterized protein; NESG, structure, structur	94.57
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	94.44
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	94.35
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	94.25
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	94.22
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	93.73
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	93.68
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	93.68
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	93.35
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	93.21
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	92.78
4g1t_A	472	Interferon-induced protein with tetratricopeptide	92.59
1klx_A	138	Cysteine rich protein B; structural genomics, heli	92.56
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	92.5
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	92.49
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	92.48
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	92.38
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	92.32
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	92.26
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	91.83
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	91.17
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	91.05
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	90.91
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	90.25
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	89.99
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	89.91
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	89.64
1klx_A	138	Cysteine rich protein B; structural genomics, heli	89.63
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	89.24
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	89.04
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	89.01
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	87.68
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	86.88
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	86.39
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	86.29
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	83.59
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	83.58
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	83.17
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	82.87
2vkj_A	106	TM1634; membrane protein, TPR motif joint center f	81.93
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	81.0
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	80.97
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	80.51
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	80.2

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=100.00  E-value=3.5e-42  Score=305.38  Aligned_cols=258  Identities=78%  Similarity=1.247  Sum_probs=201.4

Q ss_pred             CCccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCcceeEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEE
Q 024876            1 MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAW   80 (261)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~   80 (261)
                      |+|+++-+.   ...+++++...+.++.+.+.|..+...||++..++.++++||.|+|+++|.|..|..||.|+|||+++
T Consensus         1 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~gd~v~v~y~g~   77 (338)
T 2if4_A            1 MDESLEHQT---QTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHYRAW   77 (338)
T ss_dssp             -------------------------------------CCCCCCCSCCEEEETTEEEEEEECCBSCCCCTTCEEEEEEEEE
T ss_pred             Chhhhhhhc---cccCccchhhhhhhccCCCCCCcccCCCCCCCcCceeCCCCeEEEEEeCCCCCCCCCCCEEEEEEEEE
Confidence            667766655   55666788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEee
Q 024876           81 AESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIG  160 (261)
Q Consensus        81 ~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~  160 (261)
                      +.++|++|++++..+.|++|++|.+..+|+||+.+|.+|++||++.|+||+.++||..+...++.||++++++|.|+|++
T Consensus        78 ~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~  157 (338)
T 2if4_A           78 TKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIG  157 (338)
T ss_dssp             ETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEEEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEE
T ss_pred             EcCCCcEeecccCCCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEEEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEE
Confidence            98769999999877789999999863599999999999999999999999999999988644478999999999999999


Q ss_pred             cccCccccccCCCchhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHH
Q 024876          161 FDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA  240 (261)
Q Consensus       161 v~~~~~~~e~~~l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A  240 (261)
                      +....+....|.++.++++..+..++..|+.+|+.|+|..|+..|++|+.+...........+..+....++..+|+|+|
T Consensus       158 ~~~~~e~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla  237 (338)
T 2if4_A          158 FDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIA  237 (338)
T ss_dssp             EECCCCCBTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHH
T ss_pred             ecCCccccccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHH
Confidence            99888777789999999999999999999999999999999999999999875432222233444566777788999999


Q ss_pred             HHHHHhhCHHHHHHHHHhhcC
Q 024876          241 ACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       241 ~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .||+++++|.+|+.+|++||+
T Consensus       238 ~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          238 ACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999873

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=100.00  E-value=4.5e-34  Score=231.28  Aligned_cols=179  Identities=75%  Similarity=1.182  Sum_probs=121.1

Q ss_pred             CCccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCcceeEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEE
Q 024876            1 MEEVDGEPKSQAPGEVGESEIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAW   80 (261)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~   80 (261)
                      |+|+++.   +....++++++..++++...+.|.+...+|++...++.++++|++|+++++|+|..|..||.|+|||+++
T Consensus         1 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~gl~~~vl~~G~G~~~~~Gd~V~v~Y~g~   77 (180)
T 2f4e_A            1 MDESLEH---QTQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHYRAW   77 (180)
T ss_dssp             ------------------------------------CCSCCCCCSCCEEEETTEEEEEEECCBSCCBCTTCEEEEEEEEE
T ss_pred             ChhHhhh---hhccCCccchhhhhhccccccCCCCcccCCcccCCCcEECCCceEEEEEeCCCCCCCCCCCEEEEEEEEE
Confidence            5666655   3477888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEee
Q 024876           81 AESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIG  160 (261)
Q Consensus        81 ~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~  160 (261)
                      +.++|++|++++..+.|+.|.+|.+..+++||+.+|.+|++|++++|+||+.++||..+...++.||++++|+|+|+|++
T Consensus        78 l~~dG~~fdss~~~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~  157 (180)
T 2f4e_A           78 TKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIG  157 (180)
T ss_dssp             ETTTCCEEEETTTTTCCEEEETTSCCGGGHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEE
T ss_pred             ECCCCcEEeccCccCCCEEEEeCCCCchhHHHHHHHhCCCCCCEEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEE
Confidence            98669999999888889999999752489999999999999999999999999999988532367999999999999999


Q ss_pred             cccCccccccCCCchhhHhhhh
Q 024876          161 FDETKEGKARSDMTVEERIGAA  182 (261)
Q Consensus       161 v~~~~~~~e~~~l~~ee~~~~a  182 (261)
                      |....+.+..|.|+.+|++..|
T Consensus       158 v~~~~e~~~~~~mt~eErl~~A  179 (180)
T 2f4e_A          158 FDETKEGKARSDMTVEERIGAA  179 (180)
T ss_dssp             ESCBCCC---------------
T ss_pred             EecCccccccccCCHHHHHhhc
Confidence            9988866668999999999876

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=3.2e-32  Score=250.60  Aligned_cols=206  Identities=29%  Similarity=0.473  Sum_probs=155.3

Q ss_pred             eCCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEE
Q 024876           50 LHEKVTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLH  128 (261)
Q Consensus        50 ~~~gi~k~vl~~G~G~~-p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~  128 (261)
                      +++||.|+|+++|+|.. |..||.|+|||++++.+ |++|++|+..+.|+.|++|.+ .+|+||+.+|.+|++||++.|+
T Consensus        29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~-g~~~dss~~~~~p~~~~~g~~-~~i~g~~~~l~~m~~Ge~~~~~  106 (457)
T 1kt0_A           29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSN-GKKFDSSHDRNEPFVFSLGKG-QVIKAWDIGVATMKRGEICHLL  106 (457)
T ss_dssp             ----CEEEC--------CCCBTCEEEEEEEEEC------CBC------CEEEETTST-TSCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECC-CCEEeccCCCCCCeEEEeCCc-chhhHHHHHHhhCCCCCEEEEE
Confidence            57999999999999995 99999999999999865 899999988788999999999 8999999999999999999999


Q ss_pred             EeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecccCc----------------------cc-------------------
Q 024876          129 VGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETK----------------------EG-------------------  167 (261)
Q Consensus       129 i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~~~----------------------~~-------------------  167 (261)
                      |||.++||..|.  ++.||++++++|+|+|++|....                      .+                   
T Consensus       107 i~~~~~yg~~g~--~~~i~~~~~l~~~v~l~~~~~~~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~~g~~f~~~  184 (457)
T 1kt0_A          107 CKPEYAYGSAGS--LPKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRMFDCR  184 (457)
T ss_dssp             ECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEECEETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEETTEEEEEE
T ss_pred             EChHHhccccCC--CCCCCCCCcEEEEEeeceeecccccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEeCCeEEecC
Confidence            999999999887  57899999999999999876420                      00                   


Q ss_pred             ---------------------------------------------------------------------cccCCCchhhH
Q 024876          168 ---------------------------------------------------------------------KARSDMTVEER  178 (261)
Q Consensus       168 ---------------------------------------------------------------------~e~~~l~~ee~  178 (261)
                                                                                           ...|.+..+.+
T Consensus       185 ~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~  264 (457)
T 1kt0_A          185 DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEK  264 (457)
T ss_dssp             EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHH
T ss_pred             ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHH
Confidence                                                                                 00011222334


Q ss_pred             hhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (261)
Q Consensus       179 ~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~  258 (261)
                      ...+..++..|+.+|+.|+|..|+..|++|+.+......  ..++...++..++..+|+|+|.||+++++|++|+.+|++
T Consensus       265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  342 (457)
T 1kt0_A          265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--LSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK  342 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--CChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            456667888999999999999999999999998765422  234556678888999999999999999999999999999


Q ss_pred             hcC
Q 024876          259 VSK  261 (261)
Q Consensus       259 aL~  261 (261)
                      ||+
T Consensus       343 al~  345 (457)
T 1kt0_A          343 ALG  345 (457)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            973

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.97  E-value=8.3e-29  Score=219.10  Aligned_cols=199  Identities=26%  Similarity=0.420  Sum_probs=177.5

Q ss_pred             EeCCcEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccc---hhHHHHHHhhcCCCCcE
Q 024876           49 VLHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKK---EMTGLAIGVSSMKAGEH  124 (261)
Q Consensus        49 ~~~~gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~---~i~gle~~l~~Mk~Ge~  124 (261)
                      ..++||.|+|+++|.|. +|..|+.|+|||++++ + |++||++     |+.|.+|.| .   ++++|+.+|..|++||+
T Consensus        22 ~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~-g~~fd~~-----~~~f~lG~g-~~~~~~~~~e~al~~~~~Ge~   93 (336)
T 1p5q_A           22 EEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-K-DKLFDQR-----ELRFEIGEG-ENLDLPYGLERAIQRMEKGEH   93 (336)
T ss_dssp             CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-T-TEEEEEE-----EEEEETTCG-GGGTCCHHHHHHHTTCCTTCE
T ss_pred             cCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-C-CEEEecC-----CeEEEeCCC-CccccchHHHHHHhcCCCCCe
Confidence            44789999999999999 8999999999999998 4 8999987     899999988 5   58999999999999999


Q ss_pred             EEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecccCccccccCCCchhhHhhhhcccchhhHHhhhhhhHHHHHHH
Q 024876          125 ALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQ  204 (261)
Q Consensus       125 ~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~~~~~~e~~~l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~  204 (261)
                      +.|.|+|.++||..|.. ...||+++++.|++.|.++.....   .+.+..+.....+..++..|+.+|+.|+|..|+..
T Consensus        94 ~~l~i~p~~ayg~~g~~-~~~i~~~~~l~f~~~L~~~~~A~~---~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~  169 (336)
T 1p5q_A           94 SIVYLKPSYAFGSVGKE-KFQIPPNAELKYELHLKSFEKAKE---SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQ  169 (336)
T ss_dssp             EEEEECTTTTTTTTCBG-GGTBCSSCCEEEEEEEEEEECCCC---GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             EEEEECCccccCcCCCC-ccCCCCCCeEEEEEEEeecccccc---hhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999862 126999999999999999998876   78888888888999999999999999999999999


Q ss_pred             HHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          205 YEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       205 Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      |++|+.+......  ...+...++..+...+++|+|.|++++++|.+|+..|++||+
T Consensus       170 y~~Al~~~p~~~~--~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  224 (336)
T 1p5q_A          170 YKKIVSWLEYESS--FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE  224 (336)
T ss_dssp             HHHHHHHTTTCCC--CCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccc--CChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999998765422  223455677888899999999999999999999999999873

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.94  E-value=3.2e-26  Score=171.80  Aligned_cols=111  Identities=26%  Similarity=0.453  Sum_probs=103.2

Q ss_pred             eEeCCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEE
Q 024876           48 EVLHEKVTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHAL  126 (261)
Q Consensus        48 ~~~~~gi~k~vl~~G~G~~-p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~  126 (261)
                      +++++|++|+++++|+|.. |..||.|+|||++++.+ |++|++++..+.|+.|.+|.+ .+++||+.+|.+|++|+++.
T Consensus         2 ~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~d-G~~~d~s~~~~~p~~f~lG~~-~~i~g~e~~l~gm~~Ge~~~   79 (113)
T 1yat_A            2 EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLEN-GQKFDSSVDRGSPFQCNIGVG-QVIKGWDVGIPKLSVGEKAR   79 (113)
T ss_dssp             EECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETT-SCEEEESTTTTCCEEEETTSS-SSCHHHHHHGGGCCTTCEEE
T ss_pred             CCCCCCeEEEEEECCCCcccCCCCCEEEEEEEEEECC-CCEEEecCCCCCcEEEEeCCC-CccHHHHHHHhCCCCCCEEE
Confidence            4678999999999999996 99999999999999865 899999987778999999999 89999999999999999999


Q ss_pred             EEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876          127 LHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (261)
Q Consensus       127 ~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~  162 (261)
                      |.|||.++||..+.  ++.||+|++|+|+|+|++|+
T Consensus        80 v~ip~~~ayG~~~~--~~~Ip~~~~l~f~vel~~ik  113 (113)
T 1yat_A           80 LTIPGPYAYGPRGF--PGLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             EEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEC
T ss_pred             EEECHHHCcCCCCC--CCCcCCCCeEEEEEEEEEeC
Confidence            99999999999886  46799999999999999874

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.94  E-value=3.9e-26  Score=172.83  Aligned_cols=110  Identities=29%  Similarity=0.412  Sum_probs=100.5

Q ss_pred             eCCcEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCC-------CcCcEEecCCccchhHHHHHHhhcCCC
Q 024876           50 LHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLE-------QQPLEMVLGKEKKEMTGLAIGVSSMKA  121 (261)
Q Consensus        50 ~~~gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~-------~~~~~~~lG~~~~~i~gle~~l~~Mk~  121 (261)
                      +|+|++|+|+++|+|. .|..||.|+|||++++.+ |++|++++..       +.|+.|.+|.+ .+++||+.+|.+|++
T Consensus         2 ~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~d-G~~fdss~~~~~~~~~~~~p~~f~lG~~-~~i~G~e~~l~gm~~   79 (119)
T 3kz7_A            2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPD-GTVFDTNIQTSSKKKKNAKPLSFKVGVG-KVIRGWDEALLTMSK   79 (119)
T ss_dssp             CSCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTT-SCEEEECCCCSSSTTTTCCCEEEETTSS-SSCHHHHHHHTTCCT
T ss_pred             CCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECC-CCEEEeccccccccccCCCCEEEEECCC-ChhHHHHHHHhCCCC
Confidence            5799999999999997 799999999999999876 8999999753       47999999999 899999999999999


Q ss_pred             CcEEEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876          122 GEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (261)
Q Consensus       122 Ge~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~  162 (261)
                      |+++.|.|||.++||..+.. ...|||+++|+|+|+|++|.
T Consensus        80 Ge~~~v~ip~~~aYG~~g~~-~~~Ip~~~~l~f~veL~~i~  119 (119)
T 3kz7_A           80 GEKARLEIEPEWAYGKKGQP-DAKIPPNTKLIFEVELVDID  119 (119)
T ss_dssp             TCEEEEEECGGGTTCTTCBG-GGTBCTTCCEEEEEEEEEEC
T ss_pred             CCEEEEEECcHHhcCCCCCC-CCccCcCCeEEEEEEEEEeC
Confidence            99999999999999999862 12799999999999999874

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.94  E-value=4.4e-26  Score=178.07  Aligned_cols=110  Identities=30%  Similarity=0.526  Sum_probs=103.5

Q ss_pred             eCCcEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEE
Q 024876           50 LHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLH  128 (261)
Q Consensus        50 ~~~gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~  128 (261)
                      .++||+|+++++|+|. .|..||.|+|||++++.+ |++|++++..+.|+.|.+|.+ .+|+||+.+|.+|++||+++|+
T Consensus        33 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~d-G~~fdss~~~~~p~~f~lG~g-~~i~G~e~~l~gm~~Ge~~~v~  110 (144)
T 3o5e_A           33 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSN-GKKFDSSHDRNEPFVFSLGKG-QVIKAWDIGVATMKKGEICHLL  110 (144)
T ss_dssp             CSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTT-SCEEEESGGGTSCEEEETTSS-SSCHHHHHHHTTCCBTCEEEEE
T ss_pred             CCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECC-CCEEEeecccCCCeEEEeCCC-cccHHHHHHHhCCCCCCEEEEE
Confidence            3699999999999998 899999999999999876 899999988888999999999 8999999999999999999999


Q ss_pred             EeCCCCcCCCCCCCCCCCCCCCceEEEEEEeeccc
Q 024876          129 VGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE  163 (261)
Q Consensus       129 i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~  163 (261)
                      |||.++||..+.  ++.|||+++|+|+|+|++|+.
T Consensus       111 ipp~~aYG~~g~--~~~Ipp~~~L~f~VeL~~ikg  143 (144)
T 3o5e_A          111 CKPEYAYGSAGS--LPKIPSNATLFFEIELLDFKG  143 (144)
T ss_dssp             ECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEEC
T ss_pred             EChHHCcCCCCC--CCCcCCCCeEEEEEEEEEecC
Confidence            999999999987  578999999999999999863

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.94  E-value=3e-26  Score=182.75  Aligned_cols=124  Identities=23%  Similarity=0.371  Sum_probs=110.6

Q ss_pred             ceeEeCCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcE
Q 024876           46 EVEVLHEKVTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEH  124 (261)
Q Consensus        46 ~~~~~~~gi~k~vl~~G~G~~-p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~  124 (261)
                      .+.++++|++|+++++|+|.. |..||.|+|||++++.+ |++|++++..+.|++|.+|   .+|+||+.+|.+|++|++
T Consensus        31 ~~~~~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~d-G~~fdss~~~g~p~~f~lg---~vI~G~eeaL~gMk~Ge~  106 (167)
T 1jvw_A           31 DAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRD-GTVFDSSRERGKPTTFRPN---EVIKGWTEALQLMREGDR  106 (167)
T ss_dssp             TEEECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTT-SCEEEEHHHHTSCEEECGG---GSCHHHHHHHTTCCTTCE
T ss_pred             CcEECCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEECC-CCEEeeccccCCCEEEEeC---chhHHHHHHHcCCCCCCE
Confidence            467889999999999999996 99999999999999876 8999999876789999995   799999999999999999


Q ss_pred             EEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecccCccccccCCCchhhHhh
Q 024876          125 ALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIG  180 (261)
Q Consensus       125 ~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~~~~~~e~~~l~~ee~~~  180 (261)
                      ++|.|||.++||..+.  ++.||||++|+|+|+|++|.+.     .|.++.++..+
T Consensus       107 ~~~~Ip~~laYG~~g~--~~~Ipp~s~LiF~VeL~~i~~~-----~~~~~~~e~~~  155 (167)
T 1jvw_A          107 WRLFIPYDLAYGVTGG--GGMIPPYSPLEFDVELISIKDG-----GKGRTAEEVDE  155 (167)
T ss_dssp             EEEEECGGGTTTTTCS--SSSSCTTCCEEEEEEEEEEGGG-----CCSCBHHHHHH
T ss_pred             EEEEECchhhCCCCCC--CCCcCCCCeEEEEEEEEEEEcC-----CCCCCHHHHHH
Confidence            9999999999999986  4689999999999999999864     45566665443

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.94  E-value=4.4e-27  Score=186.32  Aligned_cols=118  Identities=19%  Similarity=0.321  Sum_probs=100.4

Q ss_pred             eEeCCcEEEEEEecCCCCCC--CCCCEEEEEEEEEEeC-CCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcE
Q 024876           48 EVLHEKVTKQIIKEGHGQKP--SKYSTCFLHYRAWAES-TRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEH  124 (261)
Q Consensus        48 ~~~~~gi~k~vl~~G~G~~p--~~g~~V~v~y~~~~~~-~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~  124 (261)
                      .++++||+|+||++|+|..|  ..|+.|+|||++++.+ +|++||||+.++.|++|.+|.+ .+|+||+.+|.+|++||+
T Consensus         6 ~~~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~P~~f~lG~g-~vI~Gwd~gl~~M~~Ge~   84 (165)
T 2lkn_A            6 RLREDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKK-FKLPVWETIVCTMREGEI   84 (165)
T ss_dssp             HHHTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTTTTCCEEEESSSS-CSCSHHHHHHTTCCTTCE
T ss_pred             cccCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEecccCCCCEEEEecCC-CccHHHHHHHhcCccCce
Confidence            46789999999999999844  5799999999999864 5899999999999999999999 899999999999999999


Q ss_pred             EEEEEeCCCCcCC-----------CCCCCCC------------------------CCCCCCceEEEEEEeecccCcc
Q 024876          125 ALLHVGWELGYGK-----------EGSFSFP------------------------NVSPMADLVYEVVLIGFDETKE  166 (261)
Q Consensus       125 ~~~~i~~~~~yg~-----------~g~~~~~------------------------~ip~~~~l~~~iel~~v~~~~~  166 (261)
                      ++|+|||+++||.           .+...+.                        .|+++++|+|+|||++|+.+.+
T Consensus        85 ~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~e  161 (165)
T 2lkn_A           85 AQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGT  161 (165)
T ss_dssp             EEEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTT
T ss_pred             EEEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCcc
Confidence            9999999999982           0110000                        0334578999999999998875

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.93  E-value=1.6e-25  Score=172.50  Aligned_cols=112  Identities=30%  Similarity=0.479  Sum_probs=104.2

Q ss_pred             ceeEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEE
Q 024876           46 EVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHA  125 (261)
Q Consensus        46 ~~~~~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~  125 (261)
                      .+..+++|++|+++++|+|..|..||.|+|||++++.+ |++|++++..+.|+.|.+|.+ .+++||+++|.+|++||++
T Consensus        22 ~~~~~~~gl~~~~l~~G~G~~~~~gd~V~v~Y~g~~~d-G~~fdss~~~~~p~~f~lG~g-~vi~G~eeaL~gmk~Ge~~   99 (133)
T 2y78_A           22 TVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGG-MVIKGWDEGVQGMKVGGVR   99 (133)
T ss_dssp             CCEECTTSCEEEEEECCSSCBCCTTSEEEEEEEEEETT-SCEEEETTTTTCCEEEETTSS-SSCHHHHHHSTTCBTTCEE
T ss_pred             CcEECCCCEEEEEEEcCCCCCCCCCCEEEEEEEEEECC-CCEEeccCcCCCCEEEEeCCC-ChhHHHHHHHcCCCCCCEE
Confidence            35678999999999999999999999999999999865 899999987778999999999 8999999999999999999


Q ss_pred             EEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeec
Q 024876          126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF  161 (261)
Q Consensus       126 ~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v  161 (261)
                      +|.||+.++||..+.  ++.|||+++|+|+|+|++|
T Consensus       100 ~v~ip~~~aYG~~~~--~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          100 RLTIPPQLGYGARGA--GGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             EEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEC
T ss_pred             EEEECcHHhCCCCCC--CCCCCCCCeEEEEEEEEEC
Confidence            999999999999886  4579999999999999975

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.93  E-value=6.9e-26  Score=173.61  Aligned_cols=110  Identities=30%  Similarity=0.526  Sum_probs=103.2

Q ss_pred             eCCcEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEE
Q 024876           50 LHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLH  128 (261)
Q Consensus        50 ~~~gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~  128 (261)
                      .++|++|+++++|+|. .|..||.|+|||++++.+ |++|++++..+.|+.|.+|.+ .+++||+.+|.+|++|++++|.
T Consensus        17 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~d-G~~fdss~~~~~p~~f~lG~g-~~i~G~e~~l~gm~~Ge~~~v~   94 (128)
T 3o5q_A           17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSN-GKKFDSSHDRNEPFVFSLGKG-QVIKAWDIGVATMKKGEICHLL   94 (128)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETT-SCEEEEHHHHTSCEEEETTSS-SSCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECC-CCEEEecCCCCCCEEEEECCC-CccHHHHHHHhcCCCCCEEEEE
Confidence            5699999999999998 799999999999999976 899999987778999999999 8999999999999999999999


Q ss_pred             EeCCCCcCCCCCCCCCCCCCCCceEEEEEEeeccc
Q 024876          129 VGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE  163 (261)
Q Consensus       129 i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~  163 (261)
                      |||.++||..+.  ++.|||+++|+|+|+|++|+.
T Consensus        95 ip~~~aYG~~g~--~~~Ip~~~~l~f~vel~~i~~  127 (128)
T 3o5q_A           95 CKPEYAYGSAGS--LPKIPSNATLFFEIELLDFKG  127 (128)
T ss_dssp             ECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEEC
T ss_pred             EChHHcCCCCCC--CCCcCCCCEEEEEEEEEEecC
Confidence            999999999987  478999999999999999863

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.93  E-value=2.9e-26  Score=177.02  Aligned_cols=110  Identities=26%  Similarity=0.495  Sum_probs=96.0

Q ss_pred             eCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEE
Q 024876           50 LHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHV  129 (261)
Q Consensus        50 ~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i  129 (261)
                      +++||+|+++++|+|..+..||.|+|||++++.++|++|++++..+.|+.|.+|.+ .+++||+.+|.+|++||++.|+|
T Consensus        24 ~~~gl~~~vl~~G~g~~~~~gd~V~v~Y~g~l~~~G~~fdss~~~~~p~~f~lG~g-~~i~G~e~aL~gm~~Ge~~~v~i  102 (134)
T 3b7x_A           24 GDRGVLKDVIREGAGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGED-ITLWGMELGLLSMRRGELARFLF  102 (134)
T ss_dssp             SSSSEEEEEEECCEEEECCTTCEEEEEEEEECTTCSSCSEEC-------CEEC-CC-CCCHHHHHHHHTCEETCEEEEEE
T ss_pred             CCCCEEEEEEEcCCCCCCCCCCEEEEEEEEEECCCCeEEEecCCCCCCEEEEcCCc-chhHHHHHHHhCCCCCCEEEEEE
Confidence            57999999999999998889999999999998755899999987778999999999 89999999999999999999999


Q ss_pred             eCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876          130 GWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (261)
Q Consensus       130 ~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~  162 (261)
                      ||.++||..+.  ++.||||++|+|+|+|++|.
T Consensus       103 p~~~aYG~~~~--~~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A          103 KPNYAYGTLGC--PPLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             CGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEC
T ss_pred             CHHHCcCCCCC--CCCcCcCCeEEEEEEEEEEe
Confidence            99999999886  46799999999999999985

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.93  E-value=4.1e-25  Score=174.39  Aligned_cols=118  Identities=23%  Similarity=0.369  Sum_probs=107.4

Q ss_pred             CCCCcceeEeCCcE-EEEEEecCCCC--CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhh
Q 024876           41 PKVDSEVEVLHEKV-TKQIIKEGHGQ--KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVS  117 (261)
Q Consensus        41 ~~~~~~~~~~~~gi-~k~vl~~G~G~--~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~  117 (261)
                      +...+|..++++|+ +|+++++|+|.  .|..||.|+|||++++.+ |++|+++    .|++|.+|.+ .+|+||+.+|.
T Consensus        31 ~~~~~~~~~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~d-G~~fds~----~p~~f~lG~g-~vi~G~eeaL~  104 (157)
T 2jwx_A           31 PAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLEN-GTRVQEE----PELVFTLGDC-DVIQALDLSVP  104 (157)
T ss_dssp             CCCCSCEESSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTT-SCEEEEE----EEEEEETTTT-SSCHHHHHHTT
T ss_pred             ccccccceECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECC-CCEeecC----CCEEEEeCCC-ChhHHHHHHHc
Confidence            34567889999996 89999999997  899999999999999876 8999984    7999999999 89999999999


Q ss_pred             cCCCCcEEEEEEeCCCCcCCCC-CCCCCCCCCCCceEEEEEEeecccCcc
Q 024876          118 SMKAGEHALLHVGWELGYGKEG-SFSFPNVSPMADLVYEVVLIGFDETKE  166 (261)
Q Consensus       118 ~Mk~Ge~~~~~i~~~~~yg~~g-~~~~~~ip~~~~l~~~iel~~v~~~~~  166 (261)
                      +|++|++++|+||+.++||..+ .  .+.|||+++|+|+|+|++|.....
T Consensus       105 gMk~Ge~~~v~IP~~~aYG~~g~~--~~~IPp~stLiF~VeL~~i~~~~~  152 (157)
T 2jwx_A          105 LMDVGETAMVTADSKYCYGPQGSR--SPYIPPHAALCLEVTLKTAVDLEH  152 (157)
T ss_dssp             TSCTTCEEEEEECGGGTTTTTCCS--SSCCCTTCCEEEEEEEEEEEECSC
T ss_pred             CCCCCCEEEEEECchhcCCccccc--CCCcCCCCeEEEEEEEEEEEcccc
Confidence            9999999999999999999988 5  467999999999999999987654

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.93  E-value=1.3e-25  Score=171.40  Aligned_cols=115  Identities=23%  Similarity=0.415  Sum_probs=105.2

Q ss_pred             ceeEeCCcEEEEEEecCC--CCCCCCCCEEEEEEEEEEeCCCeEEecCcC--CCcCcEEecCCccchhHHHHHHhhcCCC
Q 024876           46 EVEVLHEKVTKQIIKEGH--GQKPSKYSTCFLHYRAWAESTRHKFDDTWL--EQQPLEMVLGKEKKEMTGLAIGVSSMKA  121 (261)
Q Consensus        46 ~~~~~~~gi~k~vl~~G~--G~~p~~g~~V~v~y~~~~~~~g~~~~st~~--~~~~~~~~lG~~~~~i~gle~~l~~Mk~  121 (261)
                      .+.++++|++|+++++|+  |..|..||.|+|||++++.++|++|++++.  .+.|+.|.+|.+ .+++||+.+|.+|++
T Consensus         6 ~~~~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~-~~i~G~e~~l~gm~~   84 (125)
T 4dip_A            6 GALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGIL-EALKGWDQGLKGMCV   84 (125)
T ss_dssp             GGGCCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSC-SSCHHHHHHSTTCCT
T ss_pred             ceEECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCC-ChhHHHHHHHhCCCC
Confidence            455678999999999999  669999999999999999844999999874  468999999999 899999999999999


Q ss_pred             CcEEEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecccC
Q 024876          122 GEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET  164 (261)
Q Consensus       122 Ge~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~~  164 (261)
                      |+++.|.|||.++||..+.   +.|||+++|+|+|+|++|.+.
T Consensus        85 Ge~~~~~ip~~~aYG~~g~---~~Ip~~~~l~f~vel~~i~~~  124 (125)
T 4dip_A           85 GEKRKLIIPPALGYGKEGK---GKIPPESTLIFNIDLLEIRNG  124 (125)
T ss_dssp             TCEEEEEECGGGTTTTTCB---TTBCTTCCEEEEEEEEEEECC
T ss_pred             CCEEEEEEChHHhcCCCCC---CCCCCCCeEEEEEEEEEEEcC
Confidence            9999999999999999985   589999999999999999764

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.93  E-value=1.9e-25  Score=165.92  Aligned_cols=106  Identities=31%  Similarity=0.594  Sum_probs=98.8

Q ss_pred             cEEEEEEecCCCCC-CCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeC
Q 024876           53 KVTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGW  131 (261)
Q Consensus        53 gi~k~vl~~G~G~~-p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~  131 (261)
                      ||+|+++++|+|.. |..||.|+|||++++.+ |++|++++..+.|++|.+|.+ .+++||+.+|.+|++|++++|.|||
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~d-G~~~d~s~~~~~p~~f~lG~~-~~i~g~~~~l~gm~~Ge~~~~~ip~   78 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLED-GKKFDSSRDRNKPFKFMLGKQ-EVIRGWEEGVAQMSVGQRAKLTISP   78 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETT-SCEEEEHHHHTSCEEEETTSC-CSCHHHHHHHTTCCTTCEEEEEECG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECC-CCEEEecCCCCCCEEEEeCCC-ChHHHHHHHHhCCCCCCEEEEEECH
Confidence            78999999999995 99999999999999875 899999976667999999999 8999999999999999999999999


Q ss_pred             CCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876          132 ELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (261)
Q Consensus       132 ~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~  162 (261)
                      .++||..+.  ++.||++++|+|+|+|++|+
T Consensus        79 ~~ayG~~~~--~~~Ip~~~~l~f~v~l~~v~  107 (107)
T 2ppn_A           79 DYAYGATGH--PGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             GGTTTTTCB--TTTBCTTCCEEEEEEEEEEC
T ss_pred             HHccCCCCC--CCCcCCCCeEEEEEEEEEeC
Confidence            999999886  46799999999999999874

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.93  E-value=3.7e-25  Score=167.19  Aligned_cols=112  Identities=23%  Similarity=0.359  Sum_probs=103.7

Q ss_pred             CCcceeEeCCc-EEEEEEecCCCC--CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcC
Q 024876           43 VDSEVEVLHEK-VTKQIIKEGHGQ--KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSM  119 (261)
Q Consensus        43 ~~~~~~~~~~g-i~k~vl~~G~G~--~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~M  119 (261)
                      ..+|+.++++| ++|+++++|+|.  .|..||.|+|||++++.+ |++|+++    .|+.|.+|.+ .+++||+.+|.+|
T Consensus         3 ~~~~~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~d-G~~~ds~----~p~~f~lG~~-~~i~g~e~~l~gm   76 (118)
T 2awg_A            3 PEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLEN-GTRVQEE----PELVFTLGDC-DVIQALDLSVPLM   76 (118)
T ss_dssp             TTCEEESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTT-SCEEEEE----EEEEEETTSS-CSCHHHHHHGGGS
T ss_pred             cccceEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECC-CCEEECC----CCEEEEECCC-ChhHHHHHHHhCC
Confidence            45788999999 999999999997  899999999999999865 8999984    7999999999 8999999999999


Q ss_pred             CCCcEEEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876          120 KAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (261)
Q Consensus       120 k~Ge~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~  162 (261)
                      ++|+++.|.||+.++||..+.  ++.||++++|+|+|+|+++.
T Consensus        77 ~~Ge~~~~~ip~~~ayG~~~~--~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           77 DVGETAMVTADSKYCYGPQGR--SPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             CTTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEE
T ss_pred             CCCCEEEEEEChHHccCCCCC--CCccCCCCeEEEEEEEEEec
Confidence            999999999999999999886  46799999999999999985

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.93  E-value=2.9e-25  Score=170.46  Aligned_cols=111  Identities=27%  Similarity=0.499  Sum_probs=102.0

Q ss_pred             eeEeCCcEEEE--EEecCCCCC-CCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCc
Q 024876           47 VEVLHEKVTKQ--IIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGE  123 (261)
Q Consensus        47 ~~~~~~gi~k~--vl~~G~G~~-p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge  123 (261)
                      ...+++|++++  ++++|+|.. |..||.|+|||++++.+ |++|++++..+.|+.|.+|.+ .+++||+.+|.+|++||
T Consensus        17 ~~~~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~d-G~~fdss~~~~~p~~f~lG~g-~vi~G~e~aL~gm~~Ge   94 (130)
T 2lgo_A           17 QGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPD-GKQFDSSRSRGKPFQFTLGAG-EVIKGWDQGVATMTLGE   94 (130)
T ss_dssp             CSSSSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTT-SCEEECTTTTTCCEEEETTST-TSCHHHHHHHHHSCTTE
T ss_pred             ceeCCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECC-CCEEEccCcCCCCEEEEeCCC-CccHHHHHHHhCCCCCC
Confidence            34567998888  999999996 99999999999999865 899999987778999999999 89999999999999999


Q ss_pred             EEEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeec
Q 024876          124 HALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF  161 (261)
Q Consensus       124 ~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v  161 (261)
                      ++.|.|||.++||..+.  ++.|||+++|+|+|+|++|
T Consensus        95 ~~~v~ip~~~aYG~~~~--~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           95 KALFTIPYQLAYGERGY--PPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             EEEEEECTTTSTTTTCC--STTSCSSCCEEEEEEEEEC
T ss_pred             EEEEEECcHHHCCCCCC--CCCcCCCCeEEEEEEEEEC
Confidence            99999999999999886  4679999999999999975

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.92  E-value=3.7e-25  Score=171.00  Aligned_cols=111  Identities=32%  Similarity=0.504  Sum_probs=103.0

Q ss_pred             eCCcEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEE
Q 024876           50 LHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLH  128 (261)
Q Consensus        50 ~~~gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~  128 (261)
                      +++|++|+++++|+|. .|..||.|+|||++++.+ |++|++++..+.|++|.+|.+ .+++||+.+|.+|++|+++.|+
T Consensus        12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~d-G~~fdss~~~~~p~~f~lG~~-~vi~G~e~~l~gm~~Ge~~~v~   89 (135)
T 1r9h_A           12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLEN-GTKFDSSRDRGDQFSFNLGRG-NVIKGWDLGVATMTKGEVAEFT   89 (135)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETT-SCEEEEHHHHTSCEEEETTTT-SSCHHHHHHHTTCCBTCEEEEE
T ss_pred             CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECC-CCEEEecCcCCCCEEEEeCCC-CccHHHHHHHhcCCCCCEEEEE
Confidence            4699999999999998 799999999999999866 899999876668999999999 8999999999999999999999


Q ss_pred             EeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecccC
Q 024876          129 VGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET  164 (261)
Q Consensus       129 i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~~  164 (261)
                      |||.++||..+.  ++.||++++|+|+|+|++|...
T Consensus        90 ip~~~aYG~~g~--~~~Ip~~~~l~f~v~l~~i~~~  123 (135)
T 1r9h_A           90 IRSDYGYGDAGS--PPKIPGGATLIFEVELFEWSAE  123 (135)
T ss_dssp             ECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEEC-
T ss_pred             EChHHcCCCCCC--CCCcCcCCcEEEEEEEEEeecC
Confidence            999999999887  5789999999999999999764

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.92  E-value=4.8e-25  Score=182.28  Aligned_cols=108  Identities=24%  Similarity=0.385  Sum_probs=101.2

Q ss_pred             ceeEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEE
Q 024876           46 EVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHA  125 (261)
Q Consensus        46 ~~~~~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~  125 (261)
                      .+.++++|++|+++++|+|..|..||.|+|||++++.+ |++|++|   +.|++|.+|   .+|+||+.+|.+|++|+++
T Consensus       111 gv~~~~sGl~y~vl~~G~G~~p~~gd~V~V~Y~g~l~d-G~vfDss---~~P~~f~lG---~vI~G~eeaL~gMk~Gek~  183 (219)
T 3oe2_A          111 GVKELADGILMTELTPGTGPKPDANGRVEVRYVGRLPD-GKIFDQS---TQPQWFRLD---SVISGWTSALQNMPTGAKW  183 (219)
T ss_dssp             TCEECGGGCEEEEEECCCSCCCCTTSEEEEEEEEECTT-SCEEEEC---SSCEEEEGG---GSCHHHHHHHTTCCTTCEE
T ss_pred             CcEECCCCeEEEEEecCCCccCCCCCEEEEEEEEEECC-CCEeecc---CCcEEEEec---chhHHHHHHHhCCCCCCEE
Confidence            36688999999999999999999999999999999886 8999998   789999998   6899999999999999999


Q ss_pred             EEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876          126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (261)
Q Consensus       126 ~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~  162 (261)
                      +|+|||.++||..|.  ++.|||+++|+|+|+|++|+
T Consensus       184 ~v~IPp~lAYG~~g~--~~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          184 RLVIPSDQAYGAEGA--GDLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             EEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEE
T ss_pred             EEEECchhcCCCCCC--CCCCCCCCeEEEEEEEEEEe
Confidence            999999999999987  45699999999999999985

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.92  E-value=1.1e-24  Score=167.16  Aligned_cols=117  Identities=31%  Similarity=0.483  Sum_probs=102.6

Q ss_pred             cceeEeCCc-EEEEEEecC-C--CCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCC
Q 024876           45 SEVEVLHEK-VTKQIIKEG-H--GQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMK  120 (261)
Q Consensus        45 ~~~~~~~~g-i~k~vl~~G-~--G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk  120 (261)
                      .++.++++| ++|+|+++| .  |..|..||.|+|||++++..+|++|++++..+.|++|.+|.+ .+++||+.+|.+|+
T Consensus         8 ~~~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~~~~p~~f~lG~g-~~i~g~e~~l~gm~   86 (129)
T 2vn1_A            8 EKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQG-EVIKGWDICVSSMR   86 (129)
T ss_dssp             EEEECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGGTTCCEEEETTSS-SSCHHHHHHHTTCC
T ss_pred             CCcEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCCCCccEEEEeCCC-CcCHHHHHHHhCCC
Confidence            356677777 456799976 4  569999999999999998334899999987778999999999 89999999999999


Q ss_pred             CCcEEEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecccC
Q 024876          121 AGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET  164 (261)
Q Consensus       121 ~Ge~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~~  164 (261)
                      +|+++.|.|||.++||..+.  ++.||||++|+|+|+|++|...
T Consensus        87 ~Ge~~~v~ip~~~aYG~~~~--~~~Ip~~~~l~f~vel~~v~~~  128 (129)
T 2vn1_A           87 KNEKCLVRIESMYGYGDEGC--GESIPGNSVLLFEIELLSFREL  128 (129)
T ss_dssp             TTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEECC
T ss_pred             CCCEEEEEEChHHcCCCCCC--CCCcCCCCeEEEEEEEEEEecC
Confidence            99999999999999999886  4679999999999999999753

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.92  E-value=3.6e-25  Score=171.12  Aligned_cols=118  Identities=22%  Similarity=0.356  Sum_probs=107.8

Q ss_pred             CCCCcceeEeCCc-EEEEEEecCCCC--CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhh
Q 024876           41 PKVDSEVEVLHEK-VTKQIIKEGHGQ--KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVS  117 (261)
Q Consensus        41 ~~~~~~~~~~~~g-i~k~vl~~G~G~--~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~  117 (261)
                      +...+|+.++++| ++|+++++|+|.  .|..||.|+|||++++.+ |++|++    ..|+.|.+|.+ .+++||+.+|.
T Consensus         5 ~~~~~~~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~d-G~~fds----~~p~~f~lG~g-~~i~G~e~~L~   78 (135)
T 2d9f_A            5 SSGEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLEN-GTRVQE----EPELVFTLGDC-DVIQALDLSVP   78 (135)
T ss_dssp             CCCSSCEESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESS-SCEEEE----EEEEEEETTSC-CSCTTTTTTGG
T ss_pred             CCcccCcEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECC-CCEEec----CCCEEEEeCCC-ChhHHHHHHHh
Confidence            3456788999988 999999999997  899999999999999876 899997    37999999999 89999999999


Q ss_pred             cCCCCcEEEEEEeCCCCcCCCC-CCCCCCCCCCCceEEEEEEeecccCcc
Q 024876          118 SMKAGEHALLHVGWELGYGKEG-SFSFPNVSPMADLVYEVVLIGFDETKE  166 (261)
Q Consensus       118 ~Mk~Ge~~~~~i~~~~~yg~~g-~~~~~~ip~~~~l~~~iel~~v~~~~~  166 (261)
                      +|++|++++|.||+.++||..+ .  ++.|||+++|+|+|+|+++....+
T Consensus        79 gm~~Ge~~~v~ip~~~aYG~~~~~--~~~Ip~~~~l~f~vel~~v~~~~~  126 (135)
T 2d9f_A           79 LMDVGETAMVTADSKYCYGPQGSR--SPYIPPHAALCLEVTLKTAVDRPD  126 (135)
T ss_dssp             GSCTTCEEEEEECHHHHTCTTCCS--SSCCCTTCCEEEEEEEEEEESSCS
T ss_pred             CCCCCCEEEEEEChhHccCcCCcC--CCccCCCCeEEEEEEEEEeecCCc
Confidence            9999999999999999999988 4  467999999999999999998765

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.92  E-value=7.4e-25  Score=181.12  Aligned_cols=112  Identities=24%  Similarity=0.347  Sum_probs=104.4

Q ss_pred             ceeEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEE
Q 024876           46 EVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHA  125 (261)
Q Consensus        46 ~~~~~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~  125 (261)
                      .+.++++|++|+|+++|+|..|..||.|+|||++++.+ |++|++++..+.|++|.+|   .+|+||+++|.+|++|+++
T Consensus       100 ~v~~~~sGl~y~vl~~G~G~~p~~gD~V~V~Y~g~l~d-G~vfdss~~~g~p~~f~lg---~vI~G~eeaL~gMk~Gek~  175 (213)
T 1fd9_A          100 GVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLID-GTVFDSTEKTGKPATFQVS---QVIPGWTEALQLMPAGSTW  175 (213)
T ss_dssp             TEEECTTSCEEEEEECCCSCCCCTTCEEEEEEEEEETT-SCEEEEHHHHCSCEEEEGG---GSCHHHHHHHTTCCTTCEE
T ss_pred             CcEECCCccEEEEEecCCCccCCCCCEEEEEEEEEECC-CCEEeeccccCCCEEEEcC---chhhHHHHHHcCCCCCCEE
Confidence            36788999999999999999999999999999999886 8999999877789999995   7999999999999999999


Q ss_pred             EEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeeccc
Q 024876          126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE  163 (261)
Q Consensus       126 ~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~  163 (261)
                      +|+|||.++||..+.  ++.||||++|+|+|+|++|.+
T Consensus       176 ~v~IP~~laYG~~g~--~~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          176 EIYVPSGLAYGPRSV--GGPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             EEEECGGGTTTTCCC--SSSCCTTCCEEEEEEEEEEEC
T ss_pred             EEEECchhccCccCC--CCCCCCCCeEEEEEEEEEEEc
Confidence            999999999999886  467999999999999999975

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.92  E-value=1.2e-24  Score=179.94  Aligned_cols=112  Identities=30%  Similarity=0.487  Sum_probs=105.2

Q ss_pred             ceeEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEE
Q 024876           46 EVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHA  125 (261)
Q Consensus        46 ~~~~~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~  125 (261)
                      .+.++++|++|+++++|+|..|..||.|+|||++++.+ |++|++++..+.|+.|.+|.+ .+++||+.+|.+|++|+++
T Consensus        98 t~~~~~sGl~~~vl~~G~G~~~~~gd~V~v~Y~g~l~d-G~~fdss~~~~~P~~f~lG~g-~vi~G~eeaL~gM~~Ge~~  175 (209)
T 3uf8_A           98 TVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGG-MVIKGWDEGVQGMKVGGVR  175 (209)
T ss_dssp             CCEECTTSCEEEEEECCCSCBCCTTCEEEEEEEEEETT-SCEEEESGGGTCCEEEETTSS-SSCHHHHHHHTTCBTTCEE
T ss_pred             cccCCCCceEEEEEEcCCCCcCCCCCEEEEEEEEEECC-CCEEEEccccCCCEEEEeCCC-ccchhHHHHHhCCCCCCEE
Confidence            46678999999999999999999999999999999976 899999988888999999999 8999999999999999999


Q ss_pred             EEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeec
Q 024876          126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF  161 (261)
Q Consensus       126 ~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v  161 (261)
                      .|.|||.++||..+.  ++.|||+++|+|+|+|++|
T Consensus       176 ~v~Ipp~~aYG~~g~--~~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          176 RLTIPPQLGYGARGA--AGVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             EEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEC
T ss_pred             EEEECcHHhCCCCCC--CCCcCCCCeEEEEEEEEEC
Confidence            999999999999987  4569999999999999975

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.92  E-value=7.1e-25  Score=168.19  Aligned_cols=115  Identities=23%  Similarity=0.315  Sum_probs=103.8

Q ss_pred             cceeEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhc------
Q 024876           45 SEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSS------  118 (261)
Q Consensus        45 ~~~~~~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~------  118 (261)
                      ..+..+++|++|+++++|+|..|..||.|+|||++++.+ |++|++++..+.|+.|.+|.+ .+++||+.+|.+      
T Consensus         5 ~~~~~~~~Gl~~~~l~~G~G~~~~~gd~V~v~Y~g~~~d-G~~fdss~~~~~p~~f~lG~~-~~i~G~~~~L~G~~~~~~   82 (129)
T 1u79_A            5 CEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLEN-GKVFDSSYNRGKPLTFRIGVG-EVIKGWDQGILGSDGIPP   82 (129)
T ss_dssp             CCCEECTTSCEEEEEECCSSCBCCTTCEEEEEEEEECTT-SCEEEEHHHHTSCEEEETTSS-SSCHHHHHHHHCBTTBCC
T ss_pred             CccEECCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEECC-CCEEEecCCCCCCEEEEeCCC-CccHHHHHHhcccccccc
Confidence            346788999999999999999999999999999999876 899999976668999999998 899999999998      


Q ss_pred             CCCCcEEEEEEeCCCCcCCCCCC---CCCCCCCCCceEEEEEEeec
Q 024876          119 MKAGEHALLHVGWELGYGKEGSF---SFPNVSPMADLVYEVVLIGF  161 (261)
Q Consensus       119 Mk~Ge~~~~~i~~~~~yg~~g~~---~~~~ip~~~~l~~~iel~~v  161 (261)
                      |++|++++|.|||.++||..+..   .++.||||++|+|+|+|++|
T Consensus        83 m~~Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           83 MLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             CBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             cCCCCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            99999999999999999998741   12479999999999999986

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.91  E-value=3.2e-24  Score=178.51  Aligned_cols=110  Identities=26%  Similarity=0.519  Sum_probs=102.1

Q ss_pred             ceeEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEE
Q 024876           46 EVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHA  125 (261)
Q Consensus        46 ~~~~~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~  125 (261)
                      .+.++++|++|+++++|+|..|..||.|+|||++++.+ |++|++++..+.|++|.+|   .+|+||+++|.+|++|+++
T Consensus       115 ~v~~~~sGl~y~vl~~G~G~~p~~gD~V~V~Y~g~l~d-G~vfdss~~~g~p~~f~lg---~vI~G~eeaL~gMk~Gek~  190 (224)
T 1q6h_A          115 GVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLID-GKEFDNSYTRGEPLSFRLD---GVIPGWTEGLKNIKKGGKI  190 (224)
T ss_dssp             TEEECTTSCEEEEEECCSSCCCCTTCEEEEEEEEEETT-SCEEEEGGGGTSCEEEEGG---GSCHHHHHHGGGSCTTCEE
T ss_pred             CeEECCCceEEEEEecccCccccCCCEEEEEEEEEeCC-CCEEeeccccCCCEEEEcC---CcchhHHHHHcCCCCCCEE
Confidence            35678999999999999999999999999999999886 8999999887789999996   7999999999999999999


Q ss_pred             EEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876          126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (261)
Q Consensus       126 ~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~  162 (261)
                      +|+|||.++||..+.   +.||||++|+|+|+|++|.
T Consensus       191 ~v~IP~~laYG~~g~---~~IPp~stLiF~VeL~~ik  224 (224)
T 1q6h_A          191 KLVIPPELAYGKAGV---PGIPPNSTLVFDVELLDVK  224 (224)
T ss_dssp             EEEECGGGTTTTTCB---TTBCTTCCEEEEEEEEEEC
T ss_pred             EEEECchhhcCcCCC---CCCCCCCEEEEEEEEEEeC
Confidence            999999999999886   4599999999999999874

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=99.88  E-value=3.1e-22  Score=172.62  Aligned_cols=111  Identities=33%  Similarity=0.549  Sum_probs=103.6

Q ss_pred             eCCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEE
Q 024876           50 LHEKVTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLH  128 (261)
Q Consensus        50 ~~~gi~k~vl~~G~G~~-p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~  128 (261)
                      +++||+|+|+++|+|.. |..||.|+|||++++.+ |++|++++..+.|+.|.+|.+ .+++||+.+|.+|++|+++.|+
T Consensus        49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~d-G~~fdss~~~~~p~~f~lG~g-~vi~G~e~aL~gm~~Ge~~~v~  126 (280)
T 1q1c_A           49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLD-GTKFDSSLDRKDKFSFDLGKG-EVIKAWDIAIATMKVGEVCHIT  126 (280)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETT-SCEEEESTTSSSCEEEETTTT-SSCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECC-CCEEEecccCCCCEEEEECCc-ChhHHHHHHHhcCCCCCEEEEE
Confidence            46899999999999995 99999999999999866 899999987778999999999 8999999999999999999999


Q ss_pred             EeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecccC
Q 024876          129 VGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET  164 (261)
Q Consensus       129 i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~~  164 (261)
                      |||.++||..+.  ++.||++++|+|+|+|++|...
T Consensus       127 ipp~~aYG~~g~--~~~Ip~~~~lvf~Vel~~i~~~  160 (280)
T 1q1c_A          127 CKPEYAYGSAGS--PPKIPPNATLVFEVELFEFKGE  160 (280)
T ss_dssp             ECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEECE
T ss_pred             ECcHHhCCCcCc--cCCCCCCCcEEEEEEeeeeccc
Confidence            999999999887  5789999999999999998753

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.88  E-value=2.9e-22  Score=147.39  Aligned_cols=98  Identities=31%  Similarity=0.481  Sum_probs=89.7

Q ss_pred             CCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCC
Q 024876           64 GQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSF  143 (261)
Q Consensus        64 G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~  143 (261)
                      |..++.||.|+|||++++.+ |++|++++..+.|+.|.+|.+ .+++||+.+|.+|++|+++.|.||+.++||..+.  +
T Consensus         3 g~~~~~gd~V~v~y~~~~~d-G~~~d~s~~~~~p~~f~lG~~-~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~--~   78 (102)
T 2pbc_A            3 PIKSRKGDVLHMHYTGKLED-GTEFDSSLPQNQPFVFSLGTG-QVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGA--P   78 (102)
T ss_dssp             CCCCCTTCEEEEEEEEECTT-SCEEEESTTTTCCEEEETTSS-SSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCB--T
T ss_pred             CCcCCCCCEEEEEEEEEECC-CCEEEeCCCCCCCEEEEeCCC-CccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCC--C
Confidence            34789999999999999865 899999987778999999999 8999999999999999999999999999999886  4


Q ss_pred             CCCCCCCceEEEEEEeecccCc
Q 024876          144 PNVSPMADLVYEVVLIGFDETK  165 (261)
Q Consensus       144 ~~ip~~~~l~~~iel~~v~~~~  165 (261)
                      +.||++++|+|+|+|+++....
T Consensus        79 ~~Ip~~~~l~f~v~l~~v~~~~  100 (102)
T 2pbc_A           79 PKIPGGATLVFEVELLKIERRT  100 (102)
T ss_dssp             TTBCTTCCEEEEEEEEEEGGGC
T ss_pred             CCcCcCCeEEEEEEEEEecccC
Confidence            6799999999999999998654

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=99.85  E-value=3.1e-23  Score=185.00  Aligned_cols=118  Identities=29%  Similarity=0.509  Sum_probs=2.9

Q ss_pred             cceeEeCCcEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCc
Q 024876           45 SEVEVLHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGE  123 (261)
Q Consensus        45 ~~~~~~~~gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge  123 (261)
                      ....++++||+|+|+++|+|. .|..||.|+|||++++.+ |++|++++..+.|+.|.+|.+ .+|+||+.+|.+|++|+
T Consensus         4 ~~~~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~d-G~~fdss~~~~~p~~~~lG~g-~~i~g~e~~l~gm~~Ge   81 (356)
T 3jxv_A            4 EENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLD-GKKFDSSRDRDDTFKFKLGQG-QVIKGWDQGIKTMKKGE   81 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccceECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECC-CCEEEEcccCCCcEEEEeCCC-ccchHHHHHHhcCCCCC
Confidence            345678999999999999995 899999999999999986 899999988888999999999 89999999999999999


Q ss_pred             EEEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecccCcc
Q 024876          124 HALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE  166 (261)
Q Consensus       124 ~~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~~~~  166 (261)
                      ++.|+|||+++||..+.  ++.||++++|+|+|+|+++....+
T Consensus        82 ~~~~~ip~~~aYG~~g~--~~~Ip~~~~l~f~vel~~~~~~~d  122 (356)
T 3jxv_A           82 NALFTIPPELAYGESGS--PPTIPANATLQFDVELLSWTSVRD  122 (356)
T ss_dssp             --------------------------------------CCEEE
T ss_pred             EEEEEEChHHhCCCCCC--CCCcCCCCEEEEEeeEEeeecccc
Confidence            99999999999999987  568999999999999999976543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.85  E-value=7.1e-20  Score=168.20  Aligned_cols=186  Identities=18%  Similarity=0.281  Sum_probs=150.5

Q ss_pred             CCcEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCcc--chhHHHHHHhhcCCCCcEEEE
Q 024876           51 HEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEK--KEMTGLAIGVSSMKAGEHALL  127 (261)
Q Consensus        51 ~~gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~--~~i~gle~~l~~Mk~Ge~~~~  127 (261)
                      ++++.+++++.|.|. +|..|+.|+|||++++ + |++|+++     +++|.+|.|.  .++++|+.|+..|+.||++.|
T Consensus       145 dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~-~-g~~f~~~-----~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l  217 (457)
T 1kt0_A          145 DGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-G-GRMFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQREEQCIL  217 (457)
T ss_dssp             SSSEEEEEEECCBCSCCCCTTCEEEEEEEEEE-T-TEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEE
T ss_pred             CcceEEEEEecCCCCCCCCCCCEEEEEEEEEe-C-CeEEecC-----ceEEEeCCCccccCChHHHHHHHhCCCCCEEEE
Confidence            568999999999998 8999999999999998 4 8999974     6999999761  378999999999999999999


Q ss_pred             EEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecccCccccc-cC-------------------CCchh-------hHhh
Q 024876          128 HVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKA-RS-------------------DMTVE-------ERIG  180 (261)
Q Consensus       128 ~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~~~~~~e-~~-------------------~l~~e-------e~~~  180 (261)
                      .++|.++|+..|... ..||+++.+.|.+.+..+.+....-. ..                   .-..+       +.+.
T Consensus       218 ~i~P~~ay~~~g~~~-~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~  296 (457)
T 1kt0_A          218 YLGPRYGFGEAGKPK-FGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS  296 (457)
T ss_dssp             EECGGGTTCSSCBGG-GTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             EECcccccCCCCCcc-cCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            999999999988631 36999999999999999887764100 00                   00000       0011


Q ss_pred             h-------------------hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHH
Q 024876          181 A-------------------ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA  241 (261)
Q Consensus       181 ~-------------------a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~  241 (261)
                      .                   +..+...|..+++.++|..|+..|++||.+-..                 ...+|+|+|.
T Consensus       297 ~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~a~~~~g~  359 (457)
T 1kt0_A          297 WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-----------------NEKGLYRRGE  359 (457)
T ss_dssp             HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------------CHHHHHHHHH
T ss_pred             HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-----------------cHHHHHHHHH
Confidence            1                   233457789999999999999999999986432                 2468999999


Q ss_pred             HHHHhhCHHHHHHHHHhhcC
Q 024876          242 CLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       242 c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ||+++++|++|+.++.+||+
T Consensus       360 a~~~~g~~~~A~~~~~~al~  379 (457)
T 1kt0_A          360 AQLLMNEFESAKGDFEKVLE  379 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHccCHHHHHHHHHHHHH
Confidence            99999999999999999874

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=99.85  E-value=6.2e-21  Score=170.09  Aligned_cols=111  Identities=29%  Similarity=0.403  Sum_probs=101.2

Q ss_pred             CCcEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCc-CCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEE
Q 024876           51 HEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTW-LEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLH  128 (261)
Q Consensus        51 ~~gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~-~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~  128 (261)
                      +++++++++++|.|. .|..||.|+|||++++.+ |++|+++. ..+.|+.|.+|.+ .+|+||+.+|.+|++||++.|+
T Consensus       243 d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~d-G~~fd~~~~~~~~p~~f~~G~g-~~i~G~e~~l~gm~~Ge~~~v~  320 (356)
T 3jxv_A          243 DKKILKKVLKEXEGYERPNEGAVVTVKITGKLQD-GTVFLKKGHDEQEPFEFKTDEE-AVIEGLDRAVLNMKKGEVALVT  320 (356)
T ss_dssp             TCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESS-SCEEEEESCTTSCCCEEETTTT-SSCHHHHHHHTTCCBTCEEEEE
T ss_pred             ccceeEEeeecccccCCCCCCCEEEEEEEEEECC-CCEEeeccccCCcCEEEEECCC-ccchHHHHHHhCCCCCCEEEEE
Confidence            578999999999995 999999999999999987 89999873 5578999999999 8999999999999999999999


Q ss_pred             EeCCCCcCCCCCCCCCCCCCCCceEEEEEEeeccc
Q 024876          129 VGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE  163 (261)
Q Consensus       129 i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~  163 (261)
                      |||+++||..+....+.||++++|+|+|+|++|.+
T Consensus       321 ip~~~aYG~~~~~~~~~Ip~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          321 IPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             ECGGGTTTTSCEESSSEECTTCCEEEEEEEEEEEC
T ss_pred             EChHHccCCCCcCCCCcCCcCCeEEEEEEEEEEEc
Confidence            99999999987532467999999999999999874

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=99.83  E-value=5.8e-20  Score=158.35  Aligned_cols=110  Identities=24%  Similarity=0.423  Sum_probs=98.0

Q ss_pred             eCCcEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccc---hhHHHHHHhhcCCCCcEE
Q 024876           50 LHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKK---EMTGLAIGVSSMKAGEHA  125 (261)
Q Consensus        50 ~~~gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~---~i~gle~~l~~Mk~Ge~~  125 (261)
                      .++|+.|+++++|+|. .|..||.|+|||++++ + |++|++     .++.|.+|.+ .   +|+||+.+|.+|++||++
T Consensus       166 ~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~-d-G~~fd~-----~~~~f~lG~g-~~~~~i~G~e~~l~gmk~Ge~~  237 (280)
T 1q1c_A          166 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-K-DKLFDQ-----RELRFEIGEG-ENLDLPYGLERAIQRMEKGEHS  237 (280)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-T-TEEEEE-----EEEEEETTCG-GGGTCCHHHHHHHTTCCTTCEE
T ss_pred             cccceeEEeeecccccccccCCceEEEEEEEEe-C-CEEEec-----CCeEEEecCC-cccccchhHHHHHhCCCCCcEE
Confidence            4688999999999999 7999999999999998 4 899997     3899999998 6   599999999999999999


Q ss_pred             EEEEeCCCCcCCCCCCCCC-CCCCCCceEEEEEEeecccCccccccCC
Q 024876          126 LLHVGWELGYGKEGSFSFP-NVSPMADLVYEVVLIGFDETKEGKARSD  172 (261)
Q Consensus       126 ~~~i~~~~~yg~~g~~~~~-~ip~~~~l~~~iel~~v~~~~~~~e~~~  172 (261)
                      .|+|||.++||..+.  +. .||+|++++|+|+|++|.+.++   .|+
T Consensus       238 ~v~ip~~~~yG~~~~--~~~~IP~~~~l~f~V~L~~i~~~~~---~W~  280 (280)
T 1q1c_A          238 IVYLKPSYAFGSVGK--EKFQIPPNAELKYELHLKSFEKAKE---SWE  280 (280)
T ss_dssp             EEEECGGGTTTTTCB--GGGTBCTTCCEEEEEEEEEEECCCC------
T ss_pred             EEEEChhHcCCcCCC--ccCccCCCCeEEEEEEEEEEeCCCC---CCC
Confidence            999999999999875  23 5999999999999999998886   663

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.70  E-value=2.7e-17  Score=130.75  Aligned_cols=72  Identities=15%  Similarity=0.249  Sum_probs=67.0

Q ss_pred             CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCC
Q 024876           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG  139 (261)
Q Consensus        66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g  139 (261)
                      .++.|+.|+|||++++.+ |++|++|+..+.|+.|.+|.+ .+|+||+.+|.+|++|+++.|.|||.++||...
T Consensus        24 ~i~~gd~V~v~Y~g~l~d-G~vfDss~~~~~P~~f~lG~g-~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~   95 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDD-GTTAESTRNNGKPALFRLGDA-SLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPS   95 (169)
T ss_dssp             SCCTTCEEEEEEEEEETT-SCEEEEHHHHTSCEEEETTSS-SSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCC
T ss_pred             cCCCCCEEEEEEEEEECC-CCEEEecCCCCCCEEEEECCC-CccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            578999999999999876 899999987668999999999 899999999999999999999999999999853

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.68  E-value=7e-17  Score=120.48  Aligned_cols=87  Identities=17%  Similarity=0.311  Sum_probs=74.8

Q ss_pred             CCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCC
Q 024876           64 GQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSF  143 (261)
Q Consensus        64 G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~  143 (261)
                      +..++.||.|+|||++++ + |++|+++.  +.|+.|.+|.+ .+|+||+.+|.+|++|+++.|.|++...||..+.   
T Consensus        27 ~~~~~~gD~V~v~Y~g~~-d-G~~fdss~--~~p~~f~lG~g-~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~Yg~~~~---   98 (113)
T 1hxv_A           27 DKKLANGDIAIIDFTGIV-D-NKKLASAS--AQNYELTIGSN-SFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL---   98 (113)
T ss_dssp             --CCCSSEEEEEEEEEEE-T-TEECSTTC--CSEEEEEETSS-CSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG---
T ss_pred             CCCCCCCCEEEEEEEEEE-C-CEEcccCC--ccCEEEEECCC-ChhHHHHHHHCCCCCCCEEEEEEeCchhhCcCCC---
Confidence            447899999999999998 5 99999984  67999999999 8999999999999999999999973333887552   


Q ss_pred             CCCCCCCceEEEEEEeecc
Q 024876          144 PNVSPMADLVYEVVLIGFD  162 (261)
Q Consensus       144 ~~ip~~~~l~~~iel~~v~  162 (261)
                          ++++++|+|+|++|+
T Consensus        99 ----~g~~l~F~V~l~~Vk  113 (113)
T 1hxv_A           99 ----QSKPVTFEVVLKAIK  113 (113)
T ss_dssp             ----GSCCCEEEEEECCBC
T ss_pred             ----CCCEEEEEEEEEEEC
Confidence                579999999999874

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.67  E-value=9.8e-17  Score=126.23  Aligned_cols=70  Identities=23%  Similarity=0.332  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEEEEEEeCCCeEEecCcCC-------------CcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCC
Q 024876           67 PSKYSTCFLHYRAWAESTRHKFDDTWLE-------------QQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWEL  133 (261)
Q Consensus        67 p~~g~~V~v~y~~~~~~~g~~~~st~~~-------------~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~  133 (261)
                      ++.||.|+|||++++ + |++|++|+..             +.|+.|.+|.+ .+|+||+.+|.+|++|+++.|.|||.+
T Consensus         2 i~~Gd~V~v~Y~g~l-d-G~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g-~vi~G~eeaL~gm~~Ge~~~v~Ipp~~   78 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-D-GKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEG-QVLPGLDEAILEMDVGEEREVVLPPEK   78 (157)
T ss_dssp             CCTTCEEEEEEEEEE-T-TEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSS-SSCHHHHHHHHHCCTTCEEEEEECGGG
T ss_pred             CCCCCEEEEEEEEEE-C-CEEEEeccccccccccccccccCCCCEEEEECCC-cHHHHHHHHHcCCCCCCEEEEEECcHH
Confidence            678999999999999 5 9999999752             37999999999 899999999999999999999999999


Q ss_pred             CcCCCC
Q 024876          134 GYGKEG  139 (261)
Q Consensus       134 ~yg~~g  139 (261)
                      +||..+
T Consensus        79 aYG~~~   84 (157)
T 3pr9_A           79 AFGKRD   84 (157)
T ss_dssp             TTCCCC
T ss_pred             hcCCCC
Confidence            999865

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.64  E-value=1e-15  Score=120.01  Aligned_cols=72  Identities=21%  Similarity=0.340  Sum_probs=65.6

Q ss_pred             CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCC
Q 024876           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG  139 (261)
Q Consensus        66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g  139 (261)
                      .++.|+.|++||++++..+|++|++|+. ..|+.|.+|.+ .+++||+.+|.+|++|+++.|.|||..+||..+
T Consensus         6 ~i~~gd~V~v~Y~g~~~~dG~~fdss~~-~~p~~f~~G~g-~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~   77 (151)
T 2kr7_A            6 LESIKQAALIEYEVREQGSSIVLDSNIS-KEPLEFIIGTN-QIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE   77 (151)
T ss_dssp             CTTSCCEEEEEEEEEESSCSCEEEESTT-TCCEEEETTCC-CSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC
T ss_pred             CCCCCCEEEEEEEEEECCCCCEEEeCCC-CcCEEEEECCC-CccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC
Confidence            5789999999999998734899999965 46999999999 899999999999999999999999999999864

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.64  E-value=2.5e-16  Score=123.49  Aligned_cols=73  Identities=26%  Similarity=0.370  Sum_probs=65.7

Q ss_pred             CCCCCCEEEEEEEEEEeCCCeEEecCcC-------------CCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCC
Q 024876           66 KPSKYSTCFLHYRAWAESTRHKFDDTWL-------------EQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWE  132 (261)
Q Consensus        66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~-------------~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~  132 (261)
                      .++.||.|++||++++.+ |++|++|+.             ...|+.|.+|.+ .+++||+.+|.+|++|+++.|.|||+
T Consensus         1 ~i~~gd~V~v~Y~g~~~d-G~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g-~vi~G~eeaL~gm~~Ge~~~v~ipp~   78 (151)
T 1ix5_A            1 MVDKGVKIKVDYIGKLES-GDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEG-QLIQGFEEAVLDMEVGDEKTVKIPAE   78 (151)
T ss_dssp             CCCTTCEEEECCEECCTT-SCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTT-CSCHHHHHHHHTCCTTCCCEEEECTT
T ss_pred             CCCCCCEEEEEEEEEECC-CCEEEecchhhcccccccccccCCCCEEEEECCC-ChhHHHHHHHcCCCCCCEEEEEECcH
Confidence            367899999999999865 899999963             346999999999 89999999999999999999999999


Q ss_pred             CCcCCCCC
Q 024876          133 LGYGKEGS  140 (261)
Q Consensus       133 ~~yg~~g~  140 (261)
                      .+||..+.
T Consensus        79 ~aYG~~~~   86 (151)
T 1ix5_A           79 KAYGNRNE   86 (151)
T ss_dssp             TSSCSCCS
T ss_pred             HHCCCCCc
Confidence            99998653

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.63  E-value=6.1e-16  Score=128.66  Aligned_cols=97  Identities=21%  Similarity=0.296  Sum_probs=82.3

Q ss_pred             CCCCCEEEEEEEEEEeCCCeEEecCcCC-------------CcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCC
Q 024876           67 PSKYSTCFLHYRAWAESTRHKFDDTWLE-------------QQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWEL  133 (261)
Q Consensus        67 p~~g~~V~v~y~~~~~~~g~~~~st~~~-------------~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~  133 (261)
                      ++.||.|+|||++++ + |++|++|+..             +.|+.|.+|.+ .+++||+.+|.+|++|+++.|.|||.+
T Consensus         2 i~~Gd~V~v~Y~g~l-d-G~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g-~vIpG~eeaL~Gm~vGek~~v~Ippe~   78 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-D-GKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEG-QVLPGLDEAILEMDVGEEREVVLPPEK   78 (231)
T ss_dssp             CCTTCEEEEEEEEEE-T-TEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSS-SSCHHHHHHHHTCCTTCEEEEEECGGG
T ss_pred             CCCCCEEEEEEEEEE-C-CEEEEeccchhcccccccccccCCCCEEEEeCCC-cHHHHHHHHHcCCCCCCEEEEEeCcHH
Confidence            578999999999999 5 9999999752             37999999999 899999999999999999999999999


Q ss_pred             CcCCCCCCC--------------CC---------------------------CCC-CCCceEEEEEEeecccCcc
Q 024876          134 GYGKEGSFS--------------FP---------------------------NVS-PMADLVYEVVLIGFDETKE  166 (261)
Q Consensus       134 ~yg~~g~~~--------------~~---------------------------~ip-~~~~l~~~iel~~v~~~~~  166 (261)
                      +||..+...              .+                           +.| +|.+|.|+|+|+++.....
T Consensus        79 AYGe~~~~lv~~vp~~~f~~~~~~~~vG~~~~~~~~~g~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~v~eat~  153 (231)
T 3prb_A           79 AFGKRDPSKIKLIPLSEFTKRGIKPIKGLTITIDGIPGKIVSINSGRVLVDFNHELAGKEVKYRIKIEEVVDDKK  153 (231)
T ss_dssp             TTCCCCGGGEEEEETHHHHTTTCCCCTTCEEEETTEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEECCSHH
T ss_pred             hcCCCChHHEEecCHHHCCcccCCCCCCcEEEecCCCEEEEEEcCCEEEEeCCCccCCCEEEEEEEEEEEecCCH
Confidence            999864200              00                           112 6999999999999987764

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.63  E-value=2e-15  Score=122.75  Aligned_cols=70  Identities=21%  Similarity=0.323  Sum_probs=64.4

Q ss_pred             CCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCC
Q 024876           67 PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG  139 (261)
Q Consensus        67 p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g  139 (261)
                      ++.|+.|+|||++++.+ |++|++|+. ..|++|.+|.+ .+|+||+.+|.+|++|+++.|.|||..+||..+
T Consensus         3 i~~gd~V~v~Y~g~~~d-G~~fdss~~-~~P~~f~lG~g-~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~   72 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTED-GVLVDESPV-SAPLDYLHGHG-SLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (196)
T ss_dssp             CCSSCEEEEEEEEEETT-TEEEEECCT-TSCCEEESSSS-SSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC
T ss_pred             CCCCCEEEEEEEEEECC-CCEEEecCC-CCCEEEEECCC-CcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC
Confidence            67899999999999755 899999965 37999999999 899999999999999999999999999999864

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.62  E-value=3e-15  Score=119.44  Aligned_cols=70  Identities=21%  Similarity=0.323  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCC
Q 024876           67 PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG  139 (261)
Q Consensus        67 p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g  139 (261)
                      ++.|+.|+|+|++++.+ |++|++|+. ..|+.|.+|.+ .+++||+.+|.+|++|+++.|.|||..+||..+
T Consensus         3 i~~gd~V~v~Y~g~~~d-G~~fdss~~-~~P~~f~lG~g-~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~   72 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTED-GVLVDESPV-SAPLDYLHGHG-SLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (171)
T ss_dssp             CCTTEEEEEEEEEEETT-SCEEEECCS-SSCEEEETTSC-SSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC
T ss_pred             CCCCCEEEEEEEEEECC-CCEEeeccC-CcCEEEEECCC-CcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC
Confidence            67899999999999865 899999965 36999999999 899999999999999999999999999999874

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.53  E-value=1.7e-14  Score=113.63  Aligned_cols=65  Identities=20%  Similarity=0.246  Sum_probs=60.5

Q ss_pred             CCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCC
Q 024876           67 PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG  139 (261)
Q Consensus        67 p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g  139 (261)
                      ++.||.|+|||+++ .+ |++|++|+     +.|.+|.+ .+++||+.+|.+|++|+++.|.|||..+||..+
T Consensus         3 i~~gd~V~v~Y~g~-~d-G~~fdss~-----~~f~~G~g-~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~   67 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VE-GEVLDQGE-----LSYLHGHR-NLIPGLEEALEGREEGEAFQAHVPAEKAYGPHD   67 (158)
T ss_dssp             CCTTEEEEEEEEEE-ET-TEEEEEEE-----EEEETTSS-SSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCC
T ss_pred             CCCCCEEEEEEEEE-EC-CEEEEeeE-----EEEEECCC-CcChHHHHHHcCCCCCCEEEEEECcHHHcCCCC
Confidence            67899999999999 55 89999986     99999999 899999999999999999999999999999864

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.37  E-value=3.8e-12  Score=115.81  Aligned_cols=90  Identities=14%  Similarity=0.241  Sum_probs=80.6

Q ss_pred             CCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCC
Q 024876           64 GQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSF  143 (261)
Q Consensus        64 G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~  143 (261)
                      +..+..||.|++||+++.  +|+.|++++  +.|+.|.+|.| .+++||+.+|.+|++|+++.|.+++..+||..+.   
T Consensus       155 ~~~~~~gD~V~i~y~g~~--dG~~fd~~~--~~~~~~~lG~g-~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l---  226 (432)
T 1w26_A          155 DGAVEAEDRVTIDFTGSV--DGEEFEGGK--ASDFVLAMGQG-RMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL---  226 (432)
T ss_dssp             SSCCCTTCEEEECEEEES--SSCBCSSCC--CSSEEEETTSC-CSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT---
T ss_pred             CCCCCCCCEEEEEEEEee--CCeEccCCC--ccceEEEeCCC-CcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC---
Confidence            446899999999999984  489999986  67999999999 8999999999999999999999999999997653   


Q ss_pred             CCCCCCCceEEEEEEeecccCc
Q 024876          144 PNVSPMADLVYEVVLIGFDETK  165 (261)
Q Consensus       144 ~~ip~~~~l~~~iel~~v~~~~  165 (261)
                          +|.+++|.|+|++|....
T Consensus       227 ----ag~~~~F~V~v~~v~~~~  244 (432)
T 1w26_A          227 ----KGKAAKFAINLKKVEERE  244 (432)
T ss_dssp             ----SSCEEEEEEECCEECCEE
T ss_pred             ----CCceEEEEEEEEEEeccC
Confidence                578999999999998653

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=99.20  E-value=6.3e-12  Score=113.01  Aligned_cols=88  Identities=9%  Similarity=0.192  Sum_probs=77.2

Q ss_pred             CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCCCC
Q 024876           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN  145 (261)
Q Consensus        66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~~~  145 (261)
                      .+..||.|+|||+++.  +|+.|+++  .+.++.|.+|.| .+|+||+.+|.+|++|+++.|.++....||..+.     
T Consensus       160 ~~~~gD~V~i~y~g~~--dG~~fd~~--~~~~~~~~lG~g-~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~l-----  229 (392)
T 1t11_A          160 AAENGKRVSIDFVGSI--DGVEFEGG--KAENFPLEMGAG-RMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL-----  229 (392)
T ss_dssp             CCCTTCEEEEEEEEES--SSSCCTTC--EEEEEEEETTSC-CBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT-----
T ss_pred             CCCCCCEEEEEEEEEE--CCEEccCC--CccceEEEecCC-CcchhHHHHhCCCCCCCEEEEEEeCccccccCCC-----
Confidence            6899999999999984  48999987  357999999999 9999999999999999999999987677876432     


Q ss_pred             CCCCCceEEEEEEeecccCc
Q 024876          146 VSPMADLVYEVVLIGFDETK  165 (261)
Q Consensus       146 ip~~~~l~~~iel~~v~~~~  165 (261)
                        +|.+++|+|+|++|....
T Consensus       230 --aGk~~~F~V~v~~i~~~~  247 (392)
T 1t11_A          230 --KGKAAKFAIKVNKVEARE  247 (392)
T ss_dssp             --SSCEEEECCCEEEEEEEE
T ss_pred             --CCCeEEEEEEEEEEEcCC
Confidence              689999999999998654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.15  E-value=5.5e-11  Score=92.70  Aligned_cols=87  Identities=21%  Similarity=0.243  Sum_probs=70.7

Q ss_pred             hhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-cccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHH
Q 024876          175 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-FQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  253 (261)
Q Consensus       175 ~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai  253 (261)
                      .++++..+..+++.|+.+|+.|+|..|+..|.+|+.++..... ....+.++..+......+|+|+|.|++++++|.+|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            4678899999999999999999999999999999998754321 122234556678888999999999999999999999


Q ss_pred             HHHHhhcC
Q 024876          254 GQCSLVSK  261 (261)
Q Consensus       254 ~~c~~aL~  261 (261)
                      .+|++||+
T Consensus        84 ~~~~~al~   91 (162)
T 3rkv_A           84 ETSSEVLK   91 (162)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999873

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.91  E-value=1.4e-09  Score=81.81  Aligned_cols=66  Identities=27%  Similarity=0.320  Sum_probs=57.6

Q ss_pred             hhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (261)
Q Consensus       179 ~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~  258 (261)
                      .+.+...++.||.+|++|+|..|+..|++|+.+-..                 ...+|+|+|.||+++++|++|+.+|.+
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-----------------~~~~~~nlg~~~~~~~~~~~A~~~~~~   67 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-----------------NITFYNNKAAVYFEEKKFAECVQFCEK   67 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence            456777899999999999999999999999986332                 146899999999999999999999999


Q ss_pred             hcC
Q 024876          259 VSK  261 (261)
Q Consensus       259 aL~  261 (261)
                      ||+
T Consensus        68 al~   70 (127)
T 4gcn_A           68 AVE   70 (127)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            873

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.90  E-value=2.9e-09  Score=83.65  Aligned_cols=79  Identities=15%  Similarity=0.119  Sum_probs=62.7

Q ss_pred             HhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHH
Q 024876          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (261)
Q Consensus       178 ~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~  257 (261)
                      ....+..++..||.+|+.|+|..|+.+|++||++........  ..   ........+|+|++.|+.++|+|++|+.+|+
T Consensus         7 ~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~--a~---~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~   81 (159)
T 2hr2_A            7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE--AF---DHAGFDAFCHAGLAEALAGLRSFDEALHSAD   81 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS--CC---CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh--hh---hhccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            366788899999999999999999999999999876521110  00   0112334599999999999999999999999


Q ss_pred             hhcC
Q 024876          258 LVSK  261 (261)
Q Consensus       258 ~aL~  261 (261)
                      +||+
T Consensus        82 kAL~   85 (159)
T 2hr2_A           82 KALH   85 (159)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9984

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.84  E-value=1.2e-08  Score=81.80  Aligned_cols=105  Identities=28%  Similarity=0.316  Sum_probs=77.1

Q ss_pred             eEEEEEEeecccCccccccCCCchhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHh
Q 024876          152 LVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAV  231 (261)
Q Consensus       152 l~~~iel~~v~~~~~~~e~~~l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l  231 (261)
                      ......+..+.+..+   .|.++.+++...+..++..|+.+|+.|+|..|+..|.+++.+.......... ........+
T Consensus        11 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~   86 (198)
T 2fbn_A           11 SSGRENLYFQGAKKS---IYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-ILLDKKKNI   86 (198)
T ss_dssp             -----------CCCS---GGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH-HHHHHHHHH
T ss_pred             hhhhhhhhhccccCc---hhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh-hHHHHHHHH
Confidence            344455566777766   9999999999999999999999999999999999999999986543211110 112233555


Q ss_pred             hhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          232 KNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       232 ~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ...++.|+|.|++++++|.+|+..|.++|
T Consensus        87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al  115 (198)
T 2fbn_A           87 EISCNLNLATCYNKNKDYPKAIDHASKVL  115 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            67899999999999999999999999886

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.81  E-value=5.4e-09  Score=78.51  Aligned_cols=64  Identities=30%  Similarity=0.444  Sum_probs=46.7

Q ss_pred             hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      +.+...+++||.+|++|+|..|+..|++|+.+-...                 ..++.|+|.|++++|+|.+|+.++.+|
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~~~~~~~~~~~~~~A~~~~~~a   73 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN-----------------AILYSNRAACLTKLMEFQRALDDCDTC   73 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence            356678899999999999999999999999874321                 235556666666666666666666555


Q ss_pred             c
Q 024876          260 S  260 (261)
Q Consensus       260 L  260 (261)
                      |
T Consensus        74 l   74 (126)
T 4gco_A           74 I   74 (126)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.60  E-value=5e-08  Score=86.84  Aligned_cols=87  Identities=23%  Similarity=0.359  Sum_probs=70.8

Q ss_pred             chhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHH
Q 024876          174 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  253 (261)
Q Consensus       174 ~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai  253 (261)
                      +.++.+..+..++..|+.+|+.|+|..|+..|++|+.++.... .....+....+......+++|+|.|++++++|++|+
T Consensus       215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~  293 (370)
T 1ihg_A          215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAV  293 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-cccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence            5778889999999999999999999999999999999765421 011112222356667889999999999999999999


Q ss_pred             HHHHhhcC
Q 024876          254 GQCSLVSK  261 (261)
Q Consensus       254 ~~c~~aL~  261 (261)
                      .+|++||+
T Consensus       294 ~~~~~al~  301 (370)
T 1ihg_A          294 DSCLEALE  301 (370)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99999984

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.34  E-value=8.4e-07  Score=65.38  Aligned_cols=63  Identities=27%  Similarity=0.419  Sum_probs=45.5

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+..+...|+.+|+.|+|..|+..|.+++.+....                 ..++.|+|.|++++++|++|+..+.++|
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-----------------ARGYSNRAAALAKLMSFPEAIADCNKAI   65 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----------------hHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34567889999999999999999999999874321                 2456666666666666666666666554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.33  E-value=8.5e-07  Score=63.26  Aligned_cols=63  Identities=30%  Similarity=0.421  Sum_probs=54.3

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      +......|+.+|+.|+|..|+..|++++......                 ..++.|++.|++++|+|++|+..+.++|+
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   66 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN-----------------PVGYSNKAMALIKLGEYTQAIQMCQQGLR   66 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            4456778999999999999999999999874321                 35789999999999999999999999874

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.07  E-value=6.1e-06  Score=63.73  Aligned_cols=65  Identities=22%  Similarity=0.245  Sum_probs=43.5

Q ss_pred             hhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (261)
Q Consensus       179 ~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~  258 (261)
                      ...+..+...|+.+|+.|+|..|+..|++++.+....                 ..+++|++.|++++++|++|+..+.+
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~   70 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN-----------------PIYLSNRAAAYSASGQHEKAAEDAEL   70 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC-----------------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3456678889999999999999999999999875321                 23445555555555555555555544


Q ss_pred             hc
Q 024876          259 VS  260 (261)
Q Consensus       259 aL  260 (261)
                      +|
T Consensus        71 al   72 (164)
T 3sz7_A           71 AT   72 (164)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=98.06  E-value=6.7e-06  Score=74.64  Aligned_cols=76  Identities=5%  Similarity=0.046  Sum_probs=63.1

Q ss_pred             CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCCCC
Q 024876           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN  145 (261)
Q Consensus        66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~~~  145 (261)
                      .+..||.|+|+|+++.  +|..|+++.  +.++.|.+|.+ .  + |+.+|.||++|+...|.+..              
T Consensus       154 ~a~~gD~V~id~~~~~--dG~~~~~~~--~~~~~l~~g~~-~--~-fe~~liG~k~Ge~~~~~vtF--------------  211 (433)
T 3gty_X          154 PAEAGDLVRVNMEVYN--EEGKKLTSR--EYEYVISEDED-R--P-FVKDLVGKKKGDVVEIEREY--------------  211 (433)
T ss_dssp             CCCTTSEEEEEEEEEC--TTSCEEEEE--EEEEECCSSCC-C--T-THHHHTTCCTTCEEEEEEEE--------------
T ss_pred             ccCCCCEEEEEEEEEE--CCEECcCCC--CCCeEEEecCC-c--h-HHHHhCCCCCCceEEEEEee--------------
Confidence            4778999999999874  488998763  36788899988 5  3 99999999999999999843              


Q ss_pred             CCCCCceEEEEEEeecccCc
Q 024876          146 VSPMADLVYEVVLIGFDETK  165 (261)
Q Consensus       146 ip~~~~l~~~iel~~v~~~~  165 (261)
                        +|.+..|.|+|.+|....
T Consensus       212 --aGk~a~F~VtV~~Ik~~~  229 (433)
T 3gty_X          212 --EGKKYTYKLEVEEVYKRT  229 (433)
T ss_dssp             --TTEEEEEEEEEEEEEEEC
T ss_pred             --CCCeEEEEEEEEEEEEec
Confidence              356799999999998764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.90  E-value=1.7e-05  Score=61.28  Aligned_cols=78  Identities=15%  Similarity=0.140  Sum_probs=44.1

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhcccccc--c------cchhHHH---------HHHHhhhhhhhHHHHHHHH
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--Q------LFGKYRD---------MALAVKNPCHLNMAACLLK  245 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~--~------~~~~~~~---------~~~~l~~~~~~N~A~c~lK  245 (261)
                      ..+...|..+|+.|+|..|+..|++++.+-......  .      ......+         .+..-....++|++.|+++
T Consensus        37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~  116 (151)
T 3gyz_A           37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR  116 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            345566777777777777777777777653221000  0      0000000         1111223567788888888


Q ss_pred             hhCHHHHHHHHHhhc
Q 024876          246 LKRYEEAIGQCSLVS  260 (261)
Q Consensus       246 l~~~~~ai~~c~~aL  260 (261)
                      +|++++|+..+.+||
T Consensus       117 lg~~~eA~~~~~~al  131 (151)
T 3gyz_A          117 LKAPLKAKECFELVI  131 (151)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            888888888777775

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.88  E-value=3.3e-05  Score=53.99  Aligned_cols=58  Identities=16%  Similarity=0.127  Sum_probs=50.3

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhh-hhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP-CHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~-~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      -..|..+++.|+|..|+..|++++..-...                 .. ++.|+|.|++++++|++|+..+.++|
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al   62 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVG-----------------KDEAYYLMGNAYRKLGDWQKALNNYQSAI   62 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSST-----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            457899999999999999999999863321                 24 89999999999999999999999886

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.87  E-value=2.4e-05  Score=60.45  Aligned_cols=63  Identities=8%  Similarity=-0.067  Sum_probs=45.7

Q ss_pred             hhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ....+|..|..-.....|..|+.++....          .+..-....++|++.|+.++|+|++|+..+.+||
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al----------~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al   97 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLC----------IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF   97 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            34556666666666667778887765321          1122335689999999999999999999999986

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.87  E-value=3.3e-05  Score=54.76  Aligned_cols=60  Identities=15%  Similarity=0.124  Sum_probs=51.7

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .....|..+++.|+|..|+..|++++..-...                 ...+.|++.|+.++|+|++|+....++|
T Consensus         9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            9 TRYALAQEHLKHDNASRALALFEELVETDPDY-----------------VGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----------------THHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34567899999999999999999999864321                 3589999999999999999999999886

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.86  E-value=4e-05  Score=55.10  Aligned_cols=66  Identities=9%  Similarity=-0.024  Sum_probs=53.6

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .-..|+.+|+.++|..|+..|+.|++........          ...+..++.|+|.|+.++|++..|+....+||
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~----------~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al   73 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEIS----------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL   73 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC----------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC----------cccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            4467999999999999999999999987532110          01234688999999999999999999998886

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.86  E-value=2.5e-05  Score=57.66  Aligned_cols=32  Identities=38%  Similarity=0.360  Sum_probs=25.7

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG  213 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~  213 (261)
                      +..+...|+.+|+.|+|..|+..|++++....
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~   40 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP   40 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc
Confidence            45567788888999999999999999887643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.83  E-value=2.6e-05  Score=66.22  Aligned_cols=63  Identities=32%  Similarity=0.352  Sum_probs=48.3

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      +..++..|+.+|+.|+|..|+..|++|+......                 ..+++|+|.|++++++|++|+..+.+||+
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~la~~~~~~~~~~~A~~~~~~al~   66 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----------------AVYYTNRALCYLKMQQPEQALADCRRALE   66 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc-----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3457788999999999999999999999864321                 24677777777777777777777777653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.79  E-value=3.8e-05  Score=57.13  Aligned_cols=66  Identities=29%  Similarity=0.400  Sum_probs=47.3

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+......|..++..|+|..|+..|++++......              .....++.|+|.|++++++|++|+..+.+++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~   92 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP--------------QDQAVLHRNRAACHLKLEDYDKAETEASKAI   92 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc--------------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            34567788999999999999999999999764321              1224566667777777777777776666654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.79  E-value=3.9e-05  Score=57.03  Aligned_cols=61  Identities=15%  Similarity=0.158  Sum_probs=52.4

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .....|..+++.|+|..|+..|++|+.+-..                 ...+|.|+|.|++++|+|++|+..+.+||+
T Consensus        49 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           49 LYSNRAACLTKLMEFQRALDDCDTCIRLDSK-----------------FIKGYIRKAACLVAMREWSKAQRAYEDALQ  109 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-----------------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4556799999999999999999999986322                 135899999999999999999999999873

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.75  E-value=6.3e-05  Score=54.61  Aligned_cols=61  Identities=13%  Similarity=0.103  Sum_probs=52.6

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ......|..+++.|+|..|+..|++++......                 ..++.|++.|+.++|+|++|+..+.++|
T Consensus        28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~al   88 (117)
T 3k9i_A           28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-----------------QALRVFYAMVLYNLGRYEQGVELLLKII   88 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----------------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            445677899999999999999999999874321                 3588999999999999999999999886

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.74  E-value=4.7e-05  Score=58.23  Aligned_cols=59  Identities=8%  Similarity=-0.039  Sum_probs=48.1

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .-..|+-+|+.|+|..|+..|++++.+-...                 ..++.|++.|+.++++|++|+..+.++|
T Consensus        34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-----------------~~a~~~lg~~~~~~~~~~~A~~~~~~al   92 (150)
T 4ga2_A           34 GFYFAKLYYEAKEYDLAKKYICTYINVQERD-----------------PKAHRFLGLLYELEENTDKAVECYRRSV   92 (150)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            3457999999999999999999999874321                 3578888888888888888888888776

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.72  E-value=7e-05  Score=56.77  Aligned_cols=39  Identities=26%  Similarity=0.370  Sum_probs=33.3

Q ss_pred             hhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876          175 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG  213 (261)
Q Consensus       175 ~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~  213 (261)
                      .......+..+...|+.++..|+|..|+..|.+++....
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   44 (166)
T 1a17_A            6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNP   44 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            355677888899999999999999999999999998643

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.70  E-value=7.1e-05  Score=52.95  Aligned_cols=78  Identities=22%  Similarity=0.112  Sum_probs=40.5

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchh---HHHH---HHHhhhhhhhHHHHHHHH
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGK---YRDM---ALAVKNPCHLNMAACLLK  245 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~---~~~~---~~~l~~~~~~N~A~c~lK  245 (261)
                      ..+...|..++..|+|..|+..|.+++........           ....++   ...+   ...-...++.|+|.|+.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34555667777777777777777777765322100           000000   0000   001113456667777777


Q ss_pred             hhCHHHHHHHHHhhc
Q 024876          246 LKRYEEAIGQCSLVS  260 (261)
Q Consensus       246 l~~~~~ai~~c~~aL  260 (261)
                      ++++.+|+....+++
T Consensus        85 ~~~~~~A~~~~~~~~   99 (118)
T 1elw_A           85 LNRFEEAKRTYEEGL   99 (118)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHH
Confidence            777777777666654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.69  E-value=9.2e-05  Score=54.92  Aligned_cols=67  Identities=13%  Similarity=0.051  Sum_probs=54.9

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+...|..+++.|+|..|+..|++|+.+......          .......+|.|++.|+.++++|++|+..+.++|
T Consensus        44 ~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~----------~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal  110 (127)
T 4gcn_A           44 FYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA----------DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL  110 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch----------hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4567899999999999999999999987543211          023345789999999999999999999999887

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.68  E-value=0.00011  Score=50.01  Aligned_cols=61  Identities=23%  Similarity=0.324  Sum_probs=51.5

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ......|..++..++|..|+..|++++......                 ...+.|++.|++++++|++|+..+.+++
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~   70 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-----------------AEAWYNLGNAYYKQGDYDEAIEYYQKAL   70 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            345567899999999999999999999863221                 2578899999999999999999999886

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.68  E-value=6.1e-05  Score=58.86  Aligned_cols=72  Identities=18%  Similarity=0.071  Sum_probs=54.0

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ..-.+|..+.+.|+|.+|+..|.+||.+++..-..+  ++.    -...+..++|++.|+.++++|++|+.++++||+
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~--pd~----~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN--QDE----GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT--STH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC--Cch----HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            677889999999999999999999999743211000  000    111223449999999999999999999999974

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.68  E-value=6.3e-05  Score=58.63  Aligned_cols=60  Identities=12%  Similarity=-0.019  Sum_probs=50.8

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ....|..+++.|+|..|+..|++++.+-..                 ...++.|+|.|+.++|+|++|+..+.+||+
T Consensus       110 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  169 (184)
T 3vtx_A          110 YYKLGLVYDSMGEHDKAIEAYEKTISIKPG-----------------FIRAYQSIGLAYEGKGLRDEAVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHHhcch-----------------hhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            455688899999999999999999986322                 135899999999999999999999999874

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.65  E-value=8.8e-05  Score=56.64  Aligned_cols=77  Identities=13%  Similarity=0.070  Sum_probs=43.5

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchh---HHH---HHHHhhhhhhhHHHHHHHHh
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGK---YRD---MALAVKNPCHLNMAACLLKL  246 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~---~~~---~~~~l~~~~~~N~A~c~lKl  246 (261)
                      .+...|..++..|+|..|+..|++++..-.....           ....++   ...   .+..-....++|++.|++.+
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~  102 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX  102 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence            3456678888888888888888888765432100           000000   000   01112234567777777777


Q ss_pred             hCHHHHHHHHHhhc
Q 024876          247 KRYEEAIGQCSLVS  260 (261)
Q Consensus       247 ~~~~~ai~~c~~aL  260 (261)
                      |++++|+....++|
T Consensus       103 g~~~~A~~~~~~al  116 (148)
T 2vgx_A          103 GELAEAESGLFLAQ  116 (148)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            77777777776665

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.63  E-value=0.00011  Score=53.01  Aligned_cols=62  Identities=21%  Similarity=0.287  Sum_probs=53.1

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +..+...|..++..|+|..|+..|.+++......                 ..+++|+|.|++.+++|.+|+..+.+++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------------~~~~~~la~~~~~~~~~~~A~~~~~~~~   65 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-----------------MTYITNQAAVYFEKGDYNKCRELCEKAI   65 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-----------------HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4556778999999999999999999999864321                 3578999999999999999999999876

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.60  E-value=0.00012  Score=51.30  Aligned_cols=27  Identities=15%  Similarity=-0.091  Sum_probs=16.2

Q ss_pred             hhhhHHHHHHHHh-hCHHHHHHHHHhhc
Q 024876          234 PCHLNMAACLLKL-KRYEEAIGQCSLVS  260 (261)
Q Consensus       234 ~~~~N~A~c~lKl-~~~~~ai~~c~~aL  260 (261)
                      .++.|+|.|++++ +++++|+....+++
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~  104 (112)
T 2kck_A           77 DVWAAKADALRYIEGKEVEAEIAEARAK  104 (112)
T ss_dssp             HHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            3556666666666 66666666655554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.59  E-value=0.00012  Score=53.49  Aligned_cols=61  Identities=18%  Similarity=0.124  Sum_probs=52.3

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ......|..+++.|+|..|+..|++++.+-..                 ...++.|+|.|++++|+|++|+....++|
T Consensus        39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al   99 (126)
T 3upv_A           39 RGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-----------------FVRAYIRKATAQIAVKEYASALETLDAAR   99 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----------------cHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            34566789999999999999999999986332                 13589999999999999999999999886

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.59  E-value=0.00013  Score=54.86  Aligned_cols=77  Identities=16%  Similarity=0.116  Sum_probs=43.9

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc--------cccchhHHHH---------HHHhhhhhhhHHHHHHHHh
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLFGKYRDM---------ALAVKNPCHLNMAACLLKL  246 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~--------~~~~~~~~~~---------~~~l~~~~~~N~A~c~lKl  246 (261)
                      .+...|..+++.|+|..|+..|++++..-.....        ........+.         +..-....++|++.|++.+
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   99 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL   99 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            3456677778888888888888887765332100        0000000000         1111234567777777777


Q ss_pred             hCHHHHHHHHHhhc
Q 024876          247 KRYEEAIGQCSLVS  260 (261)
Q Consensus       247 ~~~~~ai~~c~~aL  260 (261)
                      |+|++|+..+.++|
T Consensus       100 g~~~~A~~~~~~al  113 (142)
T 2xcb_A          100 GDLDGAESGFYSAR  113 (142)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            77777777777665

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.57  E-value=0.00015  Score=56.48  Aligned_cols=60  Identities=10%  Similarity=0.093  Sum_probs=48.8

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      -.-..|+.++++|+|..|+..|++|+++-...                 ..++.++|.|+.++++|++|+..+.+++
T Consensus         7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~la~~~~~~~~~~~a~~~~~~~~   66 (184)
T 3vtx_A            7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN-----------------VETLLKLGKTYMDIGLPNDAIESLKKFV   66 (184)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34568999999999999999999999863321                 3578888888888898888888887764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.56  E-value=0.00014  Score=53.49  Aligned_cols=78  Identities=14%  Similarity=0.044  Sum_probs=46.3

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchh---HHH---HHHHhhhhhhhHHHHHHHH
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGK---YRD---MALAVKNPCHLNMAACLLK  245 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~---~~~---~~~~l~~~~~~N~A~c~lK  245 (261)
                      ...-..|..+++.|+|..|+..|++++..-.....           .+..++   ..+   ++..-....+.|++.|+.+
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            44567788889999999999999999876432210           000000   000   0111123456677777777


Q ss_pred             hhCHHHHHHHHHhhc
Q 024876          246 LKRYEEAIGQCSLVS  260 (261)
Q Consensus       246 l~~~~~ai~~c~~aL  260 (261)
                      +|++.+|+..+.++|
T Consensus        98 ~g~~~~A~~~~~~al  112 (121)
T 1hxi_A           98 EHNANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            777777777776665

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.52  E-value=0.00015  Score=55.24  Aligned_cols=29  Identities=10%  Similarity=-0.071  Sum_probs=24.9

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMG  213 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~  213 (261)
                      ....|..++..|+|..|+..|++++.+-.
T Consensus        58 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A           58 FLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            44678889999999999999999998754

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.51  E-value=0.00012  Score=61.98  Aligned_cols=68  Identities=16%  Similarity=0.103  Sum_probs=55.6

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..+...|+.++..|+|..|+..|++|+..+.....          .......+++|++.||.++++|++|+..+.+||
T Consensus       156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al  223 (293)
T 3u3w_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHD----------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            34667788999999999999999999987653211          023456799999999999999999999999987

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.50  E-value=0.00016  Score=55.50  Aligned_cols=60  Identities=12%  Similarity=0.020  Sum_probs=52.0

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+...|..+++.|+|..|+..|++++.+-..                 ...+++|++.|++++++|++|+..+.++|
T Consensus        47 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al  106 (164)
T 3sz7_A           47 YLSNRAAAYSASGQHEKAAEDAELATVVDPK-----------------YSKAWSRLGLARFDMADYKGAKEAYEKGI  106 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3566789999999999999999999987432                 14689999999999999999999999886

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.50  E-value=7.7e-05  Score=67.71  Aligned_cols=74  Identities=22%  Similarity=0.303  Sum_probs=62.3

Q ss_pred             cCCCchhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCH
Q 024876          170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY  249 (261)
Q Consensus       170 ~~~l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~  249 (261)
                      ...++.+++...+..+...|+.+|+.|+|..|+..|++++......                 ..+++|+|.|++++|+|
T Consensus        13 ~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~la~~~~~~g~~   75 (537)
T 3fp2_A           13 LKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE-----------------PVFYSNISACYISTGDL   75 (537)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHHTCH
T ss_pred             hcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC-----------------cHHHHHHHHHHHHcCCH
Confidence            4567788888899999999999999999999999999999864321                 36788899999999999


Q ss_pred             HHHHHHHHhhc
Q 024876          250 EEAIGQCSLVS  260 (261)
Q Consensus       250 ~~ai~~c~~aL  260 (261)
                      .+|+..+.++|
T Consensus        76 ~~A~~~~~~al   86 (537)
T 3fp2_A           76 EKVIEFTTKAL   86 (537)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999888876

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.49  E-value=0.00022  Score=54.55  Aligned_cols=62  Identities=11%  Similarity=0.024  Sum_probs=53.3

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +..+...|..+++.|+|..|+..|.+|+.+-..                 ...+|+++|.|++.+|+|++|+.++.+||
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-----------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al  124 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREET-----------------NEKALFRRAKARIAAWKLDEAEEDLKLLL  124 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-----------------chHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence            345667899999999999999999999986321                 14689999999999999999999999887

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.48  E-value=0.00024  Score=53.31  Aligned_cols=29  Identities=17%  Similarity=-0.048  Sum_probs=24.9

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMG  213 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~  213 (261)
                      ....|..+++.|+|..|+..|++++.+-.
T Consensus        55 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p   83 (142)
T 2xcb_A           55 FLGLGACRQSLGLYEQALQSYSYGALMDI   83 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            44568889999999999999999998754

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.47  E-value=8.3e-05  Score=54.01  Aligned_cols=79  Identities=23%  Similarity=0.143  Sum_probs=45.4

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHH---HH---HHHhhhhhhhHHHHHHH
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYR---DM---ALAVKNPCHLNMAACLL  244 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~---~~---~~~l~~~~~~N~A~c~l  244 (261)
                      ...+...|+.++..|+|..|+..|.+++........           ....++-.   ++   +..-...++.|+|.|++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~   95 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            345556677777777777777777777765322100           00000000   00   01112356778888888


Q ss_pred             HhhCHHHHHHHHHhhc
Q 024876          245 KLKRYEEAIGQCSLVS  260 (261)
Q Consensus       245 Kl~~~~~ai~~c~~aL  260 (261)
                      ++++|++|+..+.+++
T Consensus        96 ~~~~~~~A~~~~~~~~  111 (133)
T 2lni_A           96 AMKDYTKAMDVYQKAL  111 (133)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHH
Confidence            8888888888887765

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.45  E-value=0.0003  Score=50.51  Aligned_cols=82  Identities=21%  Similarity=0.184  Sum_probs=44.8

Q ss_pred             hhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchh---HHHH---HHHhhhhhhhHHHH
Q 024876          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGK---YRDM---ALAVKNPCHLNMAA  241 (261)
Q Consensus       179 ~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~---~~~~---~~~l~~~~~~N~A~  241 (261)
                      ...+......|..++..|+|..|+..|++++........           ....++   ....   .......++.++|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   88 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence            344556667778888888888888888888765432100           000000   0000   01111335666667


Q ss_pred             HHHHhhCHHHHHHHHHhhc
Q 024876          242 CLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       242 c~lKl~~~~~ai~~c~~aL  260 (261)
                      |+.++++|++|+....+++
T Consensus        89 ~~~~~~~~~~A~~~~~~~~  107 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKAL  107 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHH
Confidence            7777777777766666654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.45  E-value=0.00014  Score=65.29  Aligned_cols=65  Identities=20%  Similarity=0.319  Sum_probs=50.5

Q ss_pred             HhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHH
Q 024876          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (261)
Q Consensus       178 ~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~  257 (261)
                      +...+..+...|+.+|+.|+|..|+..|++++..-..                  ..++.++|.|++++|+|++|+..+.
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~la~~~~~~g~~~~A~~~~~   63 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED------------------PVFYSNLSACYVSVGDLKKVVEMST   63 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC------------------HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc------------------HHHHHhHHHHHHHHhhHHHHHHHHH
Confidence            4567788999999999999999999999999986421                  2456677777777777777777776


Q ss_pred             hhc
Q 024876          258 LVS  260 (261)
Q Consensus       258 ~aL  260 (261)
                      ++|
T Consensus        64 ~al   66 (514)
T 2gw1_A           64 KAL   66 (514)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            664

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.45  E-value=0.00031  Score=50.48  Aligned_cols=60  Identities=12%  Similarity=0.017  Sum_probs=51.0

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .....|..++..|+|..|+..|++++.....                 ....+.|+|.|+.++|++.+|+....+++
T Consensus        21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A           21 LRFTLGKTYAEHEQFDAALPHLRAALDFDPT-----------------YSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3456788999999999999999999986432                 13578999999999999999999998876

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.44  E-value=0.00023  Score=57.44  Aligned_cols=31  Identities=16%  Similarity=0.326  Sum_probs=26.1

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMG  213 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~  213 (261)
                      ..+...|+.+|+.|+|..|+..|++++....
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~   38 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTN   38 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccC
Confidence            4566789999999999999999999998753

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.44  E-value=0.00023  Score=51.70  Aligned_cols=28  Identities=14%  Similarity=0.009  Sum_probs=20.3

Q ss_pred             hhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          233 NPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       233 ~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..++.++|.|+.++|++++|+....+++
T Consensus        76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~  103 (129)
T 2xev_A           76 AGGLLKLGLSQYGEGKNTEAQQTLQQVA  103 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4457777777777777777777777665

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.41  E-value=0.00013  Score=66.72  Aligned_cols=33  Identities=30%  Similarity=0.410  Sum_probs=23.8

Q ss_pred             hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      +.+..+...|+.+++.|+|..|+..|++|+..-
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~   36 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN   36 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            445566777777777777777777777777653

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.37  E-value=0.00033  Score=51.42  Aligned_cols=29  Identities=17%  Similarity=-0.062  Sum_probs=25.0

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMG  213 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~  213 (261)
                      ....|..++..|++..|+..|++|+.+-.
T Consensus        54 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P   82 (121)
T 1hxi_A           54 WRSLGLTQAENEKDGLAIIALNHARMLDP   82 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            45678889999999999999999998743

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.36  E-value=0.00027  Score=59.75  Aligned_cols=69  Identities=16%  Similarity=0.101  Sum_probs=54.5

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +......|..++..|+|..|+..|++|+.+......     .     ..+...+++|+|.||.++++|++|+..+.+||
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-----~-----~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-----N-----EEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-----C-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-----c-----ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            344567799999999999999999999977643211     0     12224789999999999999999999999886

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.33  E-value=0.00033  Score=56.30  Aligned_cols=57  Identities=12%  Similarity=0.055  Sum_probs=50.4

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..|..+++.|+|..|+..|++++.+-...                 ..+++|++.|++++|+|++|+..+.++|
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~lg~~~~~~g~~~~A~~~~~~al  115 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKAPNN-----------------VDCLEACAEMQVCRGQEKDALRMYEKIL  115 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            38999999999999999999999874321                 3689999999999999999999999987

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.32  E-value=0.00051  Score=50.37  Aligned_cols=60  Identities=20%  Similarity=0.314  Sum_probs=51.4

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .....|.-++..|+|..|+..|++++.+...                 ...++.|+|.|++++++|++|+..+.++|
T Consensus        45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           45 YYTNRALCYLKMQQPEQALADCRRALELDGQ-----------------SVKAHFFLGQCQLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-----------------hHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3556788899999999999999999986432                 13589999999999999999999999886

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.28  E-value=0.00053  Score=50.94  Aligned_cols=66  Identities=20%  Similarity=0.108  Sum_probs=40.9

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .....|..++..|+|..|+..|.+++.+......           ......++.|+|.++..+++|++|+..+.++|
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  116 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-----------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  116 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4556788888888888888888888877643210           11223455556666666666666655555543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.28  E-value=0.00048  Score=51.14  Aligned_cols=70  Identities=13%  Similarity=0.013  Sum_probs=57.4

Q ss_pred             hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      ..+......|..++..|+|..|+..|.+++.+......           ......++.|++.+++.+++|++|+..+.++
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   75 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----------KAAERIAYSNLGNAYIFLGEFETASEYYKKT   75 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-----------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44556778899999999999999999999998653210           2334578999999999999999999999987


Q ss_pred             c
Q 024876          260 S  260 (261)
Q Consensus       260 L  260 (261)
                      +
T Consensus        76 ~   76 (164)
T 3ro3_A           76 L   76 (164)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.26  E-value=0.00052  Score=49.77  Aligned_cols=63  Identities=10%  Similarity=0.032  Sum_probs=52.2

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+-..|..++..|+|..|+..|++++......              .....++.+++.|++++|+|++|+..+.++|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~   66 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG--------------VYTPNALYWLGESYYATRNFQLAEAQFRDLV   66 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS--------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC--------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34567899999999999999999999875432              1223588999999999999999999998764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.25  E-value=0.00037  Score=48.67  Aligned_cols=61  Identities=23%  Similarity=0.370  Sum_probs=52.2

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ......|..++..|+|..|+..|++++......                 ..++.|+|.|++++++|++|+..+.+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~   67 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE-----------------SKYWLMKGKALYNLERYEEAVDCYNYVI   67 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC-----------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            345678899999999999999999999875321                 2478899999999999999999999886

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.22  E-value=0.00033  Score=67.59  Aligned_cols=79  Identities=15%  Similarity=0.064  Sum_probs=46.2

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchh---HHH---HHHHhhhhhhhHHHHHHH
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGK---YRD---MALAVKNPCHLNMAACLL  244 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~---~~~---~~~~l~~~~~~N~A~c~l  244 (261)
                      +..+...|+.+++.|+|.+|+..|++|+.+-.....           .+..++   .-+   ++..-...+|+|++.|+.
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~   88 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK   88 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            445566777777777777787777777765432100           000000   000   111122456778888888


Q ss_pred             HhhCHHHHHHHHHhhc
Q 024876          245 KLKRYEEAIGQCSLVS  260 (261)
Q Consensus       245 Kl~~~~~ai~~c~~aL  260 (261)
                      ++++|++|+..+.+||
T Consensus        89 ~~g~~~~A~~~~~kAl  104 (723)
T 4gyw_A           89 EMQDVQGALQCYTRAI  104 (723)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHH
Confidence            8888888888777775

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.20  E-value=0.00069  Score=53.69  Aligned_cols=60  Identities=12%  Similarity=0.008  Sum_probs=47.7

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .....|..+++.|+|..|+..|.+++.+...                 ...+++|+|.|++++++|++|+..+.+++
T Consensus        39 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al   98 (213)
T 1hh8_A           39 ICFNIGCMYTILKNMTEAEKAFTRSINRDKH-----------------LAVAYFQRGMLYYQTEKYDLAIKDLKEAL   98 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----------------chHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            4556677788888888888888888875321                 13578999999999999999999998876

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.20  E-value=0.00034  Score=62.57  Aligned_cols=68  Identities=12%  Similarity=-0.055  Sum_probs=53.4

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ....|..++..|+|.+|+..|++|+.++........        ..-.+..|.|+|.+|..+|+|++|+.++.+||
T Consensus        54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~--------~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~  121 (472)
T 4g1t_A           54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQA--------EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK  121 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC--------TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc--------chHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            345688899999999999999999998653211110        12235679999999999999999999998876

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.19  E-value=0.00035  Score=57.74  Aligned_cols=65  Identities=11%  Similarity=0.166  Sum_probs=54.6

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +..+-..|..+|+.|+|..|+..|++++......              .....++.++|.|++++|+|.+|+..+.++|
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l   79 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH--------------EWAADAQFYLARAYYQNKEYLLAASEYERFI   79 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS--------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--------------cchHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            3456788999999999999999999999864321              1224689999999999999999999999886

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.19  E-value=0.001  Score=46.64  Aligned_cols=29  Identities=10%  Similarity=0.000  Sum_probs=24.2

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMG  213 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~  213 (261)
                      ....|..++..|+|..|+..|++++....
T Consensus        41 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~   69 (118)
T 1elw_A           41 YSNRSAAYAKKGDYQKAYEDGCKTVDLKP   69 (118)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhCc
Confidence            45568888899999999999999998743

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.0005  Score=55.61  Aligned_cols=62  Identities=29%  Similarity=0.390  Sum_probs=54.7

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+..+...|+.++..|+|..|+..|.+++... ..                 ..++.++|.|++.+++|++|+..+.+++
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~-----------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~   65 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD-----------------ITYLNNRAAAEYEKGEYETAISTLNDAV   65 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC-----------------THHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc-----------------HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            45678889999999999999999999999874 21                 3589999999999999999999999886

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.16  E-value=0.00097  Score=48.12  Aligned_cols=28  Identities=14%  Similarity=0.062  Sum_probs=21.4

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      ....|..++..|+|..|+..|.+++...
T Consensus        53 ~~~la~~~~~~~~~~~A~~~~~~a~~~~   80 (133)
T 2lni_A           53 YSNRAACYTKLLEFQLALKDCEECIQLE   80 (133)
T ss_dssp             HHHHHHHHTTTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            4456777788888888888888888764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.14  E-value=0.0007  Score=57.74  Aligned_cols=67  Identities=16%  Similarity=0.147  Sum_probs=45.8

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +..+...|.-+.. |+|..|+..|++|+.+......           ......+++|++.++.++|+|++|+..+.++|
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~-----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  182 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER-----------LRQAAELIGKASRLLVRQQKFDEAAASLQKEK  182 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC-----------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445566777766 8888888888888877542100           11234677888888888888888888877775

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.10  E-value=0.00055  Score=53.49  Aligned_cols=75  Identities=17%  Similarity=0.218  Sum_probs=48.3

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhcccccccc------c--hhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHH
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL------F--GKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG  254 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~------~--~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~  254 (261)
                      ..+--.|+.+|.+++|.+|...|++||.+.........      +  ......-..--..+...+|.||++++++.+|+.
T Consensus        64 ~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~  143 (167)
T 3ffl_A           64 QLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIA  143 (167)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHH
Confidence            34456799999999999999999999987653210000      0  000000000012467789999999999999998


Q ss_pred             HHH
Q 024876          255 QCS  257 (261)
Q Consensus       255 ~c~  257 (261)
                      .-.
T Consensus       144 ~Le  146 (167)
T 3ffl_A          144 ILD  146 (167)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            643

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.09  E-value=0.0016  Score=52.41  Aligned_cols=67  Identities=9%  Similarity=-0.046  Sum_probs=48.8

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ....|..++..|+|..|+..|++++......          ..+......++.|++.|++++++|++|+..+.+||+
T Consensus        79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  145 (228)
T 4i17_A           79 YIGKSAAYRDMKNNQEYIATLTEGIKAVPGN----------ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD  145 (228)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----------HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence            4455666677777777777777777653321          122334456899999999999999999999999974

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.09  E-value=0.00054  Score=54.98  Aligned_cols=78  Identities=14%  Similarity=0.083  Sum_probs=52.9

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ..+..+|..++..|+|..|+..|++++..-...... ...........+...+++|+|.|+.++|+|++|+..+.++|+
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEM-YYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHH-HHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH-HHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            445678999999999999999999999863221000 000000000112234556699999999999999999999873

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.08  E-value=0.00064  Score=59.07  Aligned_cols=62  Identities=11%  Similarity=0.049  Sum_probs=53.0

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +......|..+++.|+|..|+..|++|+.+-..                 ...+++|+|.|++++++|++|+..+.+||
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al  257 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSN-----------------NEKGLSRRGEAHLAVNDFELARADFQKVL  257 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            355677899999999999999999999987432                 13688999999999999999999999886

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.07  E-value=0.00075  Score=54.69  Aligned_cols=63  Identities=10%  Similarity=-0.003  Sum_probs=52.0

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..-..|..+|+.|+|..|+..|++++......              ......+++++.|++++++|++|+....++|
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~--------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l   68 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFG--------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFI   68 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS--------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            34567899999999999999999999864321              1123588999999999999999999998876

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.07  E-value=0.00051  Score=62.24  Aligned_cols=72  Identities=7%  Similarity=-0.063  Sum_probs=57.6

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+..+...|..+..+|+|.+|+..|+++|.......+.+.         ......++|+|..|..+|+|++|+....+||
T Consensus       339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H---------p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS---------LNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC---------hHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            3445566788899999999999999999988764433221         2335789999999999999999999999987


Q ss_pred             C
Q 024876          261 K  261 (261)
Q Consensus       261 ~  261 (261)
                      +
T Consensus       410 ~  410 (433)
T 3qww_A          410 A  410 (433)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.06  E-value=0.00081  Score=56.90  Aligned_cols=69  Identities=13%  Similarity=0.001  Sum_probs=52.3

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+..+...|+.+...|+|..|+..|.+|+.+.....      .     ......+|+|++.||.++|+|++|+..+.+||
T Consensus        36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~------~-----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al  104 (292)
T 1qqe_A           36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG------N-----EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI  104 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT------C-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC------C-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            334455557777788999999999999988753210      0     11235689999999999999999999999887

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.05  E-value=0.0013  Score=47.18  Aligned_cols=66  Identities=12%  Similarity=0.102  Sum_probs=52.6

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ....|..++..|+|..|+..|.+++........    .      ......++.|+|.++.++++|++|+....+++
T Consensus        41 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  106 (131)
T 1elr_A           41 ITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE----D------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL  106 (131)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT----C------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhccccch----h------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            456788899999999999999999987542110    0      12235689999999999999999999998876

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.05  E-value=0.00053  Score=52.17  Aligned_cols=57  Identities=12%  Similarity=0.007  Sum_probs=45.2

Q ss_pred             hhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .|+-+..+|++.+|+..|++++..-.                 -....++++|.||+++++|++|+..+.++|+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p-----------------~~~~~~~~la~~y~~~~~~~~A~~~~~~al~   59 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPR-----------------QKSIKGFYFAKLYYEAKEYDLAKKYICTYIN   59 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHH-----------------HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCc-----------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            46777889999999999999986421                 2246788999999999999999999999873

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.04  E-value=0.0012  Score=52.04  Aligned_cols=62  Identities=8%  Similarity=-0.010  Sum_probs=52.9

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +......|..+++.|+|..|+..|.+++.+...                 ...+++|+|.|++++++|++|+..+.++|
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al  149 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-----------------NVKALYKLGVANMYFGFLEEAKENLYKAA  149 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-----------------cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            345667899999999999999999999987322                 13588999999999999999999999886

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.04  E-value=0.0011  Score=61.10  Aligned_cols=77  Identities=14%  Similarity=-0.025  Sum_probs=60.5

Q ss_pred             hhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHH
Q 024876          176 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ  255 (261)
Q Consensus       176 ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~  255 (261)
                      .+.++.+...-+....+..+|+|.+|+..|+++|.........+         ....+..++|+|.+|..+|+|++|+..
T Consensus       303 ~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~---------Hp~~a~~~~nLa~~y~~~g~~~eA~~~  373 (490)
T 3n71_A          303 KEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT---------NLYVLRLLSIASEVLSYLQAYEEASHY  373 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT---------SHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            34455666666677777889999999999999998876543322         123467899999999999999999999


Q ss_pred             HHhhcC
Q 024876          256 CSLVSK  261 (261)
Q Consensus       256 c~~aL~  261 (261)
                      +.++|+
T Consensus       374 ~~~aL~  379 (490)
T 3n71_A          374 ARRMVD  379 (490)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999873

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.02  E-value=0.0016  Score=47.95  Aligned_cols=61  Identities=20%  Similarity=0.144  Sum_probs=50.9

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ......|..++..++|..|+..|.+++......                 ..++.|+|.|++.+++|++|+..+.++|
T Consensus        66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~a~~~~~~~~~~~A~~~~~~al  126 (148)
T 2dba_A           66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-----------------VKALYRRSQALEKLGRLDQAVLDLQRCV  126 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344556888899999999999999999863321                 3578999999999999999999999886

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.01  E-value=0.00081  Score=58.50  Aligned_cols=61  Identities=11%  Similarity=0.104  Sum_probs=52.3

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .+...|..+++.++|..|+..|++++.+-..                 ...+++|+|.||+.+++|++|+.++.+||+
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~  292 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-----------------NPKALFRRGKAKAELGQMDSARDDFRKAQK  292 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3456788899999999999999999986322                 136899999999999999999999999874

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.00  E-value=0.00092  Score=56.56  Aligned_cols=68  Identities=24%  Similarity=0.258  Sum_probs=53.8

Q ss_pred             hcccchhhHHhhhh-hhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          182 ADRRKMDGNALFKE-EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       182 a~~~K~~Gn~~fk~-~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +..+...|..+... |+|..|+..|++|+.+.....      .     ......+++|++.+++++|+|++|+..+.+++
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~------~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  185 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ------S-----VALSNKCFIKCADLKALDGQYIEASDIYSKLI  185 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT------C-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC------C-----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            34566778888886 999999999999999864210      0     11224689999999999999999999999886

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.98  E-value=0.001  Score=58.08  Aligned_cols=68  Identities=13%  Similarity=0.191  Sum_probs=46.0

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +......|..++..|+|..|+..|.+|+.+......           ......+++|+|.||..+|+|++|+..+.+||
T Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  251 (383)
T 3ulq_A          184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ-----------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI  251 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344566788889999999999999999987643210           12234466666666666666666666666654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.98  E-value=0.00097  Score=56.25  Aligned_cols=68  Identities=22%  Similarity=0.198  Sum_probs=55.0

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhh-CHHHHHHHHHhhc
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVS  260 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~-~~~~ai~~c~~aL  260 (261)
                      +..+...|..+++.|+|..|+..|.+|+.+......           ......+|.|++.|+.++| .+++|+..+.+||
T Consensus       196 ~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-----------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-----------CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc-----------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            335567899999999999999999999988643211           1233579999999999999 5799999999987

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.98  E-value=0.0014  Score=53.73  Aligned_cols=28  Identities=21%  Similarity=0.217  Sum_probs=21.6

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      +-..|..+|+.|+|..|+..|++++...
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~   33 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKK   33 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            4456778888888888888888888764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=96.95  E-value=0.0012  Score=53.33  Aligned_cols=60  Identities=18%  Similarity=0.151  Sum_probs=51.6

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .....|..+++.|+|..|+..|++++..-...                 ...+.|++.|++++|++++|+..+.++|
T Consensus         7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~a~~~lg~~~~~~g~~~~A~~~~~~al   66 (217)
T 2pl2_A            7 NPLRLGVQLYALGRYDAALTLFERALKENPQD-----------------PEALYWLARTQLKLGLVNPALENGKTLV   66 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34567999999999999999999999863321                 3589999999999999999999999886

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=96.95  E-value=0.0017  Score=51.29  Aligned_cols=77  Identities=14%  Similarity=0.094  Sum_probs=54.2

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .....|..+++.|+|..|+..|++++............. ...........++.|+|.|+.++|+|++|+..+.++|+
T Consensus        73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI-LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG-GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHH-hccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            355679999999999999999999998764321000000 00000011236899999999999999999999998874

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.93  E-value=0.0018  Score=50.49  Aligned_cols=68  Identities=9%  Similarity=-0.032  Sum_probs=56.2

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +......|..++..|+|..|+..|.+++.+......           ......+++|++.+++.+|+|++|+..+.++|
T Consensus        26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   93 (203)
T 3gw4_A           26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-----------HTAEHRALHQVGMVERMAGNWDAARRCFLEER   93 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            445667899999999999999999999998754211           22345789999999999999999999999886

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.92  E-value=0.0014  Score=57.25  Aligned_cols=69  Identities=12%  Similarity=-0.021  Sum_probs=49.0

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+......|..++..|+|..|+..|.+|+.+......           ......+++|+|.|+..+|+|++|+..+.+||
T Consensus       181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  249 (378)
T 3q15_A          181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN-----------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAA  249 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3445557788999999999999999999987643200           12334567777777777777777777777665

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=96.92  E-value=0.0014  Score=52.92  Aligned_cols=57  Identities=19%  Similarity=0.162  Sum_probs=41.9

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ...|.-++..|+|.+|+..|++|+.+- .                 ...+++|++.|+..+|+|++|+..+.++|
T Consensus       122 ~~lg~~~~~~g~~~~A~~~~~~al~~~-~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al  178 (217)
T 2pl2_A          122 LQRGLVYALLGERDKAEASLKQALALE-D-----------------TPEIRSALAELYLSMGRLDEALAQYAKAL  178 (217)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-C-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcc-c-----------------chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345666777777777777777777653 1                 12467888888888888888888888776

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=96.91  E-value=0.0021  Score=48.33  Aligned_cols=59  Identities=17%  Similarity=0.057  Sum_probs=48.9

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ....|..++..|+|..|+..|.+++......                 ..++.|+|.|+.++++|++|+..+.+++
T Consensus        50 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~  108 (166)
T 1a17_A           50 YGNRSLAYLRTECYGYALGDATRAIELDKKY-----------------IKGYYRRAASNMALGKFRAALRDYETVV  108 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----------------HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4556888899999999999999999864321                 2578899999999999999999988876

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=96.90  E-value=0.0024  Score=45.08  Aligned_cols=77  Identities=21%  Similarity=0.230  Sum_probs=43.5

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHHH---HHH---HhhhhhhhHHHHHHHHh
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYRD---MAL---AVKNPCHLNMAACLLKL  246 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~~---~~~---~l~~~~~~N~A~c~lKl  246 (261)
                      .....|..++..|+|..|+..|.+++........           ....++-..   +..   .-...++.+++.++.++
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   90 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ   90 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence            3455677788888888888888888875432100           000000000   000   11234566777777777


Q ss_pred             hCHHHHHHHHHhhc
Q 024876          247 KRYEEAIGQCSLVS  260 (261)
Q Consensus       247 ~~~~~ai~~c~~aL  260 (261)
                      +++.+|+..+.+++
T Consensus        91 ~~~~~A~~~~~~~~  104 (125)
T 1na0_A           91 GDYDEAIEYYQKAL  104 (125)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence            77777777776664

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.87  E-value=0.00094  Score=61.47  Aligned_cols=72  Identities=10%  Similarity=-0.075  Sum_probs=57.5

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+..+...|..+..+|+|.+|+..|+++|.......+.+         .......++|+|..|..+|+|++|+..+.+||
T Consensus       350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~---------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN---------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT---------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            444566678888899999999999999998865433322         12345789999999999999999999999987


Q ss_pred             C
Q 024876          261 K  261 (261)
Q Consensus       261 ~  261 (261)
                      +
T Consensus       421 ~  421 (490)
T 3n71_A          421 A  421 (490)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=96.86  E-value=0.0027  Score=45.26  Aligned_cols=28  Identities=25%  Similarity=0.039  Sum_probs=21.2

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      ....|..++..|+|..|+..|.+++...
T Consensus        49 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~   76 (131)
T 2vyi_A           49 FCNRAAAYSKLGNYAGAVQDCERAICID   76 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhcC
Confidence            3455777778888888888888888764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.86  E-value=0.0018  Score=56.58  Aligned_cols=62  Identities=10%  Similarity=-0.024  Sum_probs=52.7

Q ss_pred             hhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .|..++..|+|..|+..|++|+.++.....           ......++.|+|.|+..++++..|+..+.+||
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al  170 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKD-----------RIEKAEFFFKMSESYYYMKQTYFSMDYARQAY  170 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            799999999999999999999998654211           12345789999999999999999999999987

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.85  E-value=0.0018  Score=56.55  Aligned_cols=65  Identities=15%  Similarity=0.045  Sum_probs=53.9

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..-.|..+|..|+|..|+..|++|+.++.....           ......++.|+|.++..++++..|+..+.+||
T Consensus       104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al  168 (378)
T 3q15_A          104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD-----------DIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL  168 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC-----------hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            334688889999999999999999998764211           13346789999999999999999999999987

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.84  E-value=0.0013  Score=58.19  Aligned_cols=60  Identities=15%  Similarity=0.083  Sum_probs=51.3

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+...|..+++.++|..|+..|++|+.+-..                 ...+++|+|.||+++++|++|+.+..+||
T Consensus       275 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al  334 (370)
T 1ihg_A          275 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-----------------NTKALYRRAQGWQGLKEYDQALADLKKAQ  334 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCch-----------------hHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3456788899999999999999999986321                 24689999999999999999999999886

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.80  E-value=0.0012  Score=59.64  Aligned_cols=72  Identities=14%  Similarity=-0.005  Sum_probs=57.4

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+..+...|..+..+|+|.+|+..|+++|.......+..         .......++|+|..|..+|+|++|+....+||
T Consensus       328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~---------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS---------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS---------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC---------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            344556668888899999999999999998875433322         12346789999999999999999999999987


Q ss_pred             C
Q 024876          261 K  261 (261)
Q Consensus       261 ~  261 (261)
                      +
T Consensus       399 ~  399 (429)
T 3qwp_A          399 D  399 (429)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.80  E-value=0.0012  Score=55.76  Aligned_cols=66  Identities=23%  Similarity=0.194  Sum_probs=52.4

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHH-HHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEA-IGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~a-i~~c~~aL  260 (261)
                      .....|..+++.|+|..|+..|++|+.+......           ......+|+|++.|+.++|++++| ..+..+||
T Consensus       198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~-----------~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-----------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-----------CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-----------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            4557789999999999999999999987532100           123457899999999999999999 66677775

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=96.80  E-value=0.002  Score=51.97  Aligned_cols=60  Identities=27%  Similarity=0.413  Sum_probs=37.9

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .....|..++..|+|..|+..|++++......                 ..+++|+|.|++++++|++|+..+.++|
T Consensus       141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------------~~~~~~l~~~~~~~~~~~~A~~~~~~al  200 (258)
T 3uq3_A          141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-----------------ARGYSNRAAALAKLMSFPEAIADCNKAI  200 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc-----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            34567888888999999999999998764321                 1344455555555555555555554443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.78  E-value=0.0012  Score=51.37  Aligned_cols=61  Identities=13%  Similarity=0.163  Sum_probs=48.2

Q ss_pred             ccchhhHHhhhhhhH----------HHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhh------
Q 024876          184 RRKMDGNALFKEEKL----------EEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK------  247 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~----------~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~------  247 (261)
                      .+...|+.+...++|          .+|+..|++||.+-..                 ....++|++.+|.+++      
T Consensus        38 a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-----------------~~~A~~~LG~ay~~lg~l~P~~  100 (158)
T 1zu2_A           38 NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-----------------KDEAVWCIGNAYTSFAFLTPDE  100 (158)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-----------------cHHHHHHHHHHHHHhcccCcch
Confidence            355567777777665          5999999999986332                 2468999999999985      


Q ss_pred             -----CHHHHHHHHHhhcC
Q 024876          248 -----RYEEAIGQCSLVSK  261 (261)
Q Consensus       248 -----~~~~ai~~c~~aL~  261 (261)
                           +|++|+..+.+||+
T Consensus       101 ~~a~g~~~eA~~~~~kAl~  119 (158)
T 1zu2_A          101 TEAKHNFDLATQFFQQAVD  119 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccHHHHHHHHHHHHH
Confidence                 89999999999873

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.78  E-value=0.0024  Score=57.84  Aligned_cols=72  Identities=13%  Similarity=-0.010  Sum_probs=53.8

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+...-+.+...-+.|+|.+|+..|+++|.........+         ....+..++|+|.+|..+|+|++|+..+.++|
T Consensus       297 ~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~---------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL  367 (433)
T 3qww_A          297 YARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS---------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKII  367 (433)
T ss_dssp             HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT---------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh---------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            333444444444556899999999999998876543222         12346789999999999999999999999987


Q ss_pred             C
Q 024876          261 K  261 (261)
Q Consensus       261 ~  261 (261)
                      +
T Consensus       368 ~  368 (433)
T 3qww_A          368 K  368 (433)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=96.76  E-value=0.0017  Score=62.69  Aligned_cols=78  Identities=21%  Similarity=0.085  Sum_probs=54.5

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchh---HHH---HHHHhhhhhhhHHHHHHHHh
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGK---YRD---MALAVKNPCHLNMAACLLKL  246 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~---~~~---~~~~l~~~~~~N~A~c~lKl  246 (261)
                      .+...|+.+++.|+|.+|+..|++|+++-.....           ....++   ..+   ++..-...+|+|+|.++.++
T Consensus        45 a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~  124 (723)
T 4gyw_A           45 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS  124 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3556788899999999999999999886432110           000011   011   12223456899999999999


Q ss_pred             hCHHHHHHHHHhhcC
Q 024876          247 KRYEEAIGQCSLVSK  261 (261)
Q Consensus       247 ~~~~~ai~~c~~aL~  261 (261)
                      |++++|+..+.+||+
T Consensus       125 g~~~eAi~~~~~Al~  139 (723)
T 4gyw_A          125 GNIPEAIASYRTALK  139 (723)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999999873

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=96.73  E-value=0.0023  Score=54.15  Aligned_cols=29  Identities=21%  Similarity=0.304  Sum_probs=21.2

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      .+...|+.++..|+|..|+..|++++...
T Consensus         5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~   33 (359)
T 3ieg_A            5 KHLELGKKLLAAGQLADALSQFHAAVDGD   33 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            34566777788888888888888877653

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=96.72  E-value=0.0042  Score=43.82  Aligned_cols=28  Identities=29%  Similarity=0.407  Sum_probs=22.0

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      ....|..++..|+|..|+..|++++...
T Consensus        46 ~~~la~~~~~~~~~~~A~~~~~~~~~~~   73 (125)
T 1na0_A           46 WYNLGNAYYKQGDYDEAIEYYQKALELD   73 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            3456777888889999999998888764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.72  E-value=0.0037  Score=48.67  Aligned_cols=66  Identities=14%  Similarity=0.009  Sum_probs=53.1

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .....|..++..|+|..|+..|.+++.+......           ......++.|++.++..+|+|++|+....++|
T Consensus       109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADD-----------QVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc-----------hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            3556688889999999999999999987543210           12335678999999999999999999998886

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=96.70  E-value=0.0034  Score=51.61  Aligned_cols=76  Identities=12%  Similarity=0.035  Sum_probs=54.0

Q ss_pred             cchhhHHhhh--------hhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHH
Q 024876          185 RKMDGNALFK--------EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC  256 (261)
Q Consensus       185 ~K~~Gn~~fk--------~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c  256 (261)
                      +...|..+|+        .|+|..|+..|++++............-.....+.......+.++|.|++++|+|.+|+..+
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  171 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY  171 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            4456888888        99999999999999987543211100001112223333445689999999999999999999


Q ss_pred             Hhhc
Q 024876          257 SLVS  260 (261)
Q Consensus       257 ~~aL  260 (261)
                      .++|
T Consensus       172 ~~~l  175 (261)
T 3qky_A          172 EAVF  175 (261)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9886

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=96.69  E-value=0.0029  Score=53.84  Aligned_cols=68  Identities=12%  Similarity=0.007  Sum_probs=54.1

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +..+...|.-+++.|+|..|+..|++++.+......           ......+++|++.|++.++++.+|+..+.++|
T Consensus       155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN-----------YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-----------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            345567789999999999999999999987643210           11223488999999999999999999999875

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.67  E-value=0.0032  Score=54.98  Aligned_cols=33  Identities=12%  Similarity=0.153  Sum_probs=27.7

Q ss_pred             hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      ..+..+...|..++..|+|..|+..|++++...
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~   78 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAG   78 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence            445566688999999999999999999999863

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.66  E-value=0.0034  Score=52.31  Aligned_cols=29  Identities=17%  Similarity=0.275  Sum_probs=23.1

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      .+...|..++..|+|..|+..|++++...
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~   35 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVG   35 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC
Confidence            44556888888888999998888888763

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=96.65  E-value=0.0025  Score=51.91  Aligned_cols=70  Identities=19%  Similarity=0.084  Sum_probs=55.5

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +..+...|..++..|+|..|+..|.+++.+.......+         ......++.|+|.|+..+++|++|+..+.++|
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  112 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD---------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL  112 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT---------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc---------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            44566789999999999999999999998763211000         12345689999999999999999999999886

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.65  E-value=0.00094  Score=48.17  Aligned_cols=53  Identities=21%  Similarity=0.091  Sum_probs=39.3

Q ss_pred             hhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          194 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       194 k~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..|+|..|+..|++++..-..              ......++.|++.|++++++|++|+..+.++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~--------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al   54 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQ--------------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGV   54 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCC--------------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            358899999999999975210              01124689999999999999999999999986

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.64  E-value=0.004  Score=50.93  Aligned_cols=59  Identities=17%  Similarity=0.144  Sum_probs=43.9

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ...|..++..|+|..|+..|++++.....                 ...++.|+|.|++++++|++|+..+.++|+
T Consensus        78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  136 (272)
T 3u4t_A           78 EYYGKILMKKGQDSLAIQQYQAAVDRDTT-----------------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIR  136 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCcc-----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            45667777777777777777777764321                 235788899999999999999998888864

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.63  E-value=0.0018  Score=50.22  Aligned_cols=60  Identities=17%  Similarity=0.236  Sum_probs=51.1

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..-..|..++..|+|..|+..|++++..-..                 ....+.|+|.+++++|+|++|+..+.+++
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-----------------~~~a~~~la~~~~~~g~~~~A~~~~~~a~   67 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS-----------------RGDVKLAKADCLLETKQFELAQELLATIP   67 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-----------------SHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence            4556788999999999999999999975322                 24689999999999999999999998876

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=96.60  E-value=0.0021  Score=52.42  Aligned_cols=70  Identities=14%  Similarity=-0.148  Sum_probs=55.5

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +......|..++..|+|..|+..|.+++.+........         ......++.|+|.|+..+++|++|+..+.++|
T Consensus        85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  154 (283)
T 3edt_B           85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF---------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL  154 (283)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC---------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44566779999999999999999999998864321100         12335789999999999999999999999886

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=96.53  E-value=0.0035  Score=51.16  Aligned_cols=77  Identities=18%  Similarity=-0.076  Sum_probs=43.1

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchh---HHHH---HHHhhhhhhhHHHHHHHHh
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGK---YRDM---ALAVKNPCHLNMAACLLKL  246 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~---~~~~---~~~l~~~~~~N~A~c~lKl  246 (261)
                      .....|..++..|+|..|+..|++++........           ....++   ...+   +..-...++.|+|.|++++
T Consensus        45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  124 (275)
T 1xnf_A           45 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG  124 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh
Confidence            3445677778888888888888888876432100           000000   0000   0111234666777777777


Q ss_pred             hCHHHHHHHHHhhc
Q 024876          247 KRYEEAIGQCSLVS  260 (261)
Q Consensus       247 ~~~~~ai~~c~~aL  260 (261)
                      |+|++|+..+.+++
T Consensus       125 g~~~~A~~~~~~a~  138 (275)
T 1xnf_A          125 GRDKLAQDDLLAFY  138 (275)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHH
Confidence            77777777766654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=96.52  E-value=0.0029  Score=53.27  Aligned_cols=60  Identities=20%  Similarity=0.314  Sum_probs=51.2

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .....|.-+++.|+|..|+..|++|+.+-..                 ...+++|+|.++.++|+|++|+....++|
T Consensus        40 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al   99 (281)
T 2c2l_A           40 YYTNRALCYLKMQQPEQALADCRRALELDGQ-----------------SVKAHFFLGQCQLEMESYDEAIANLQRAY   99 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3456789999999999999999999986322                 13689999999999999999999998886

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.52  E-value=0.004  Score=56.24  Aligned_cols=69  Identities=12%  Similarity=-0.066  Sum_probs=53.4

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .+...-..++++|+|.+|+..|++++.........+         ....+..++|+|.+|..+|+|++|+..+.++|+
T Consensus       289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~---------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~  357 (429)
T 3qwp_A          289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI---------NIYQLKVLDCAMDACINLGLLEEALFYGTRTME  357 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT---------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc---------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            333444567788999999999999998755432211         233567999999999999999999999999873

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=96.48  E-value=0.005  Score=52.01  Aligned_cols=28  Identities=14%  Similarity=0.274  Sum_probs=22.4

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMG  213 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~  213 (261)
                      ...|+.+++.|+|..|+..|++++....
T Consensus       238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~  265 (359)
T 3ieg_A          238 IESAEELIRDGRYTDATSKYESVMKTEP  265 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            3457888889999999999999887653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=96.46  E-value=0.0048  Score=53.00  Aligned_cols=78  Identities=13%  Similarity=-0.064  Sum_probs=44.5

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchh---HHHH---HHHhhhhhhhHHHHHHHH
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGK---YRDM---ALAVKNPCHLNMAACLLK  245 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~---~~~~---~~~l~~~~~~N~A~c~lK  245 (261)
                      ......|..+++.|+|..|+..|++++........           .+..++   ...+   +..-...+++|++.|+.+
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN  145 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence            34556677777788888888888877765432100           000000   0000   011123467777777878


Q ss_pred             hhCHHHHHHHHHhhc
Q 024876          246 LKRYEEAIGQCSLVS  260 (261)
Q Consensus       246 l~~~~~ai~~c~~aL  260 (261)
                      +|+|++|+..+.++|
T Consensus       146 ~g~~~~A~~~~~~al  160 (365)
T 4eqf_A          146 TSHQQDACEALKNWI  160 (365)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHH
Confidence            888887777777765

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.45  E-value=0.0036  Score=57.11  Aligned_cols=61  Identities=16%  Similarity=0.029  Sum_probs=51.9

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ......|..+++.|+|.+|+..|++|+.+-..                 ...+++|+|.+|+++++|++|+....+||
T Consensus        41 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-----------------~~~~~~~lg~~~~~~g~~~eA~~~~~~al  101 (477)
T 1wao_1           41 IYYGNRSLAYLRTECYGYALGDATRAIELDKK-----------------YIKGYYRRAASNMALGKFRAALRDYETVV  101 (477)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34566789999999999999999999986321                 13588999999999999999999999886

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.42  E-value=0.0054  Score=52.92  Aligned_cols=29  Identities=17%  Similarity=0.275  Sum_probs=22.3

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      .+...|..+++.|+|..|+..|++++...
T Consensus        11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~   39 (406)
T 3sf4_A           11 ELALEGERLCKSGDCRAGVSFFEAAVQVG   39 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence            34566788888888888888888888763

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=96.40  E-value=0.0078  Score=48.54  Aligned_cols=61  Identities=7%  Similarity=-0.013  Sum_probs=49.8

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ...|..+++.|+|..|+..|++++......              .....++.+++.|+.++|++++|+.....++
T Consensus       151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--------------~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~  211 (225)
T 2yhc_A          151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDT--------------QATRDALPLMENAYRQMQMNAQAEKVAKIIA  211 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTTS--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHCcCC--------------CccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            456888999999999999999999875432              1123578999999999999999999887653

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=96.40  E-value=0.005  Score=50.22  Aligned_cols=77  Identities=10%  Similarity=-0.114  Sum_probs=45.0

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHHHHHHHh---hh--hhhhHHHHHHHHhh
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYRDMALAV---KN--PCHLNMAACLLKLK  247 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~~~~~~l---~~--~~~~N~A~c~lKl~  247 (261)
                      .....|..++..|+|..|+..|++++........           .+..++-...++..   ..  ........+.+..+
T Consensus        79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  158 (275)
T 1xnf_A           79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL  158 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc
Confidence            3455788889999999999999999986543210           00001101111111   00  11122334447789


Q ss_pred             CHHHHHHHHHhhc
Q 024876          248 RYEEAIGQCSLVS  260 (261)
Q Consensus       248 ~~~~ai~~c~~aL  260 (261)
                      ++.+|+..+.+++
T Consensus       159 ~~~~A~~~~~~~~  171 (275)
T 1xnf_A          159 DEKQAKEVLKQHF  171 (275)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999988765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=96.35  E-value=0.0045  Score=54.96  Aligned_cols=78  Identities=12%  Similarity=0.042  Sum_probs=43.4

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------ccc-chhHHH------HHHHhhhhhhhHHHHHHH
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQL-FGKYRD------MALAVKNPCHLNMAACLL  244 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~-~~~~~~------~~~~l~~~~~~N~A~c~l  244 (261)
                      ..+...|..+++.|+|.+|+..|+++|.+-.....           ... .++...      ++..-...+++|++.|+.
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~  177 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE  177 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            33555778888888899999999988876432100           000 000000      011112245666666666


Q ss_pred             HhhCHHHHHHHHHhhc
Q 024876          245 KLKRYEEAIGQCSLVS  260 (261)
Q Consensus       245 Kl~~~~~ai~~c~~aL  260 (261)
                      ++++|.+|+..+++||
T Consensus       178 ~~g~~~eAl~~~~kal  193 (382)
T 2h6f_A          178 WLRDPSQELEFIADIL  193 (382)
T ss_dssp             HHTCCTTHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHH
Confidence            6666666666666665

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=96.33  E-value=0.007  Score=53.34  Aligned_cols=28  Identities=14%  Similarity=0.274  Sum_probs=23.8

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMG  213 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~  213 (261)
                      ...|+.+++.|+|..|+..|++++....
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p  288 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTEP  288 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            4458999999999999999999998643

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.30  E-value=0.0047  Score=51.20  Aligned_cols=72  Identities=8%  Similarity=-0.075  Sum_probs=57.6

Q ss_pred             hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      ..+..+...|..++..|+|..|+..|++++.+........         ......++.++|.|+..+++|++|+..+.++
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a   95 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD---------HPDVATMLNILALVYRDQNKYKDAANLLNDA   95 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS---------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4556677889999999999999999999998764321000         1234578999999999999999999999888


Q ss_pred             c
Q 024876          260 S  260 (261)
Q Consensus       260 L  260 (261)
                      |
T Consensus        96 l   96 (311)
T 3nf1_A           96 L   96 (311)
T ss_dssp             H
T ss_pred             H
Confidence            6

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=96.30  E-value=0.0038  Score=56.73  Aligned_cols=63  Identities=16%  Similarity=0.005  Sum_probs=53.5

Q ss_pred             hcccchhhHHhhhhhhH-HHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          182 ADRRKMDGNALFKEEKL-EEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~-~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +..+...|..++..|+| ..|+..|++|+.+-..                 ...+++|+|.||+++++|++|+..+.+||
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al  164 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-----------------LVEAWNQLGEVYWKKGDVTSAHTCFSGAL  164 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34466779999999999 9999999999986332                 13589999999999999999999999987


Q ss_pred             C
Q 024876          261 K  261 (261)
Q Consensus       261 ~  261 (261)
                      +
T Consensus       165 ~  165 (474)
T 4abn_A          165 T  165 (474)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=96.29  E-value=0.0029  Score=56.17  Aligned_cols=78  Identities=12%  Similarity=0.037  Sum_probs=54.6

Q ss_pred             ccchhhHHhhhhhh-HHHHHHHHHHHHHhhccccc-----------cccchhHHH------HHHHhhhhhhhHHHHHHHH
Q 024876          184 RRKMDGNALFKEEK-LEEAMQQYEMAIAYMGDDFM-----------FQLFGKYRD------MALAVKNPCHLNMAACLLK  245 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~-~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~~------~~~~l~~~~~~N~A~c~lK  245 (261)
                      ....+|..+++.|+ |..|+..|++|+.+-.....           ....++...      ++..-...+++|++.|+.+
T Consensus       133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~  212 (382)
T 2h6f_A          133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE  212 (382)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH
Confidence            35567888889997 99999999999986533210           000111111      1222335679999999999


Q ss_pred             hhCHHHHHHHHHhhcC
Q 024876          246 LKRYEEAIGQCSLVSK  261 (261)
Q Consensus       246 l~~~~~ai~~c~~aL~  261 (261)
                      +|+|++|+..++++|+
T Consensus       213 ~g~~~eAl~~~~~al~  228 (382)
T 2h6f_A          213 FKLWDNELQYVDQLLK  228 (382)
T ss_dssp             HTCCTTHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHH
Confidence            9999999999999873

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=96.28  E-value=0.0053  Score=54.15  Aligned_cols=80  Identities=18%  Similarity=0.173  Sum_probs=47.0

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHH---HHH---HHhhhhhhhHHHHHH
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYR---DMA---LAVKNPCHLNMAACL  243 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~---~~~---~~l~~~~~~N~A~c~  243 (261)
                      .+......|+.+++.|+|..|+..|++++........           ....++-.   .++   ..-...++++++.|+
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  104 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL  104 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            3455667788888889999999999888875322100           00000000   000   111234667777777


Q ss_pred             HHhhCHHHHHHHHHhhc
Q 024876          244 LKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       244 lKl~~~~~ai~~c~~aL  260 (261)
                      .++|++++|+..+.+++
T Consensus       105 ~~~g~~~~A~~~~~~~~  121 (450)
T 2y4t_A          105 LKQGKLDEAEDDFKKVL  121 (450)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH
Confidence            77777777777776665

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=96.27  E-value=0.0079  Score=50.27  Aligned_cols=61  Identities=13%  Similarity=0.057  Sum_probs=52.0

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .....|..+++.|+|..|+..|++++.....                 ...++.|+|.|+.++|++.+|+..+.++|+
T Consensus       238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  298 (330)
T 3hym_B          238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-----------------NASTYSAIGYIHSLMGNFENAVDYFHTALG  298 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------------CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-----------------chHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence            4456788899999999999999999986432                 136889999999999999999999999874

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=96.24  E-value=0.008  Score=45.48  Aligned_cols=27  Identities=22%  Similarity=0.233  Sum_probs=21.4

Q ss_pred             hhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          234 PCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .++.++|.++.++|++++|+..+.+++
T Consensus       145 ~~~~~la~~~~~~~~~~~A~~~~~~~~  171 (186)
T 3as5_A          145 KVHRAIAFSYEQMGRHEEALPHFKKAN  171 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            567788888888888888888877765

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=96.24  E-value=0.0071  Score=51.66  Aligned_cols=30  Identities=20%  Similarity=0.210  Sum_probs=21.7

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      ......|..+++.|+|..|+..|++++...
T Consensus        65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~   94 (368)
T 1fch_A           65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD   94 (368)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            344567777888888888888888887653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.23  E-value=0.0071  Score=50.11  Aligned_cols=68  Identities=16%  Similarity=0.102  Sum_probs=53.7

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .....|..++..|+|..|+..|++++.++.......         ......++.++|.|++++|+|++|+..+.++|
T Consensus       155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  222 (311)
T 3nf1_A          155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD---------DPNVAKTKNNLASCYLKQGKFKQAETLYKEIL  222 (311)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            355668888999999999999999998864321111         12235689999999999999999999999886

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=96.22  E-value=0.0071  Score=51.93  Aligned_cols=28  Identities=11%  Similarity=0.179  Sum_probs=20.8

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      ....|..++..|+|..|+..|++++...
T Consensus       216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~  243 (365)
T 4eqf_A          216 QTGLGVLFHLSGEFNRAIDAFNAALTVR  243 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            3455777778888888888888887754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.20  E-value=0.007  Score=53.22  Aligned_cols=76  Identities=11%  Similarity=0.035  Sum_probs=52.9

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .-++|..+++.|+|.+|+..|.++++........................++.|++..|.++|+|++|+....+++
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~   82 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST   82 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3456788999999999999999999876543111100000001122334678999999999999999999887765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.19  E-value=0.0086  Score=51.63  Aligned_cols=66  Identities=14%  Similarity=0.020  Sum_probs=42.4

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .....|..++..|+|..|+..|.+++.+......           ......+++|+|.+++.+|+|++|+..+.++|
T Consensus       189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  254 (406)
T 3sf4_A          189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----------KAAERRAYSNLGNAYIFLGEFETASEYYKKTL  254 (406)
T ss_dssp             HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC-----------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            4566788899999999999999999987643210           11223355555555555555555555555543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=96.18  E-value=0.011  Score=41.93  Aligned_cols=27  Identities=22%  Similarity=0.252  Sum_probs=22.8

Q ss_pred             hhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          234 PCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .++.+++.++..+++|.+|+..+.+++
T Consensus        70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~   96 (136)
T 2fo7_A           70 EAWYNLGNAYYKQGDYDEAIEYYQKAL   96 (136)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            467889999999999999998888765

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=96.16  E-value=0.012  Score=41.67  Aligned_cols=75  Identities=19%  Similarity=0.185  Sum_probs=48.6

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHHHHHH------HhhhhhhhHHHHHHHHhhC
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYRDMAL------AVKNPCHLNMAACLLKLKR  248 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~~~~~------~l~~~~~~N~A~c~lKl~~  248 (261)
                      ...|..++..|++..|+..|.+++........           ....++-...+.      .-...++.+++.++.++++
T Consensus        39 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  118 (136)
T 2fo7_A           39 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD  118 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc
Confidence            34577778888999999998888875432100           000011011111      1124568899999999999


Q ss_pred             HHHHHHHHHhhc
Q 024876          249 YEEAIGQCSLVS  260 (261)
Q Consensus       249 ~~~ai~~c~~aL  260 (261)
                      +++|+....+++
T Consensus       119 ~~~A~~~~~~~~  130 (136)
T 2fo7_A          119 YDEAIEYYQKAL  130 (136)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988875

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.16  E-value=0.0089  Score=45.86  Aligned_cols=77  Identities=14%  Similarity=0.156  Sum_probs=52.4

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc------------cccc--hhHHHHH------HHhhhhhhhHHHHHH
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM------------FQLF--GKYRDMA------LAVKNPCHLNMAACL  243 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~------------~~~~--~~~~~~~------~~l~~~~~~N~A~c~  243 (261)
                      .....|..++..|+|..|+..|.+++.+......            ....  ++-...+      ..-...++.|+|.++
T Consensus        46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  125 (177)
T 2e2e_A           46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDA  125 (177)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            4566788899999999999999999987543210            0110  1111111      112245788999999


Q ss_pred             HHhhCHHHHHHHHHhhc
Q 024876          244 LKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       244 lKl~~~~~ai~~c~~aL  260 (261)
                      +++|+|++|+..+.++|
T Consensus       126 ~~~g~~~~A~~~~~~al  142 (177)
T 2e2e_A          126 FMQANYAQAIELWQKVM  142 (177)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHH
Confidence            99999999999888876

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=96.16  E-value=0.01  Score=46.58  Aligned_cols=27  Identities=15%  Similarity=-0.004  Sum_probs=20.8

Q ss_pred             hhhhHHHHHHHHh-hCHHHHHHHHHhhc
Q 024876          234 PCHLNMAACLLKL-KRYEEAIGQCSLVS  260 (261)
Q Consensus       234 ~~~~N~A~c~lKl-~~~~~ai~~c~~aL  260 (261)
                      .++.+++.|+..+ ++|++|+..+.+++
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~  104 (225)
T 2vq2_A           77 EINNNYGWFLCGRLNRPAESMAYFDKAL  104 (225)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            4667788888888 88888888777765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.12  E-value=0.0095  Score=51.88  Aligned_cols=66  Identities=20%  Similarity=0.099  Sum_probs=54.6

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+...|..++..|+|..|+..|++++.+......           ......++.+++.++..+|+|.+|+..+.++|
T Consensus        88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  153 (411)
T 4a1s_A           88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-----------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHL  153 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-----------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4567789999999999999999999988643210           23446789999999999999999999999886

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.11  E-value=0.0079  Score=46.17  Aligned_cols=28  Identities=7%  Similarity=0.064  Sum_probs=20.0

Q ss_pred             cchhhHH-hhhhhhH--HHHHHHHHHHHHhh
Q 024876          185 RKMDGNA-LFKEEKL--EEAMQQYEMAIAYM  212 (261)
Q Consensus       185 ~K~~Gn~-~fk~~~~--~~A~~~Y~kal~~l  212 (261)
                      ....|.. ++..|+|  ..|+..|.+++...
T Consensus        81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~~  111 (177)
T 2e2e_A           81 YAALATVLYYQASQHMTAQTRAMIDKALALD  111 (177)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHhC
Confidence            3445666 5677887  88888888888764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=96.05  E-value=0.015  Score=43.87  Aligned_cols=27  Identities=22%  Similarity=0.402  Sum_probs=22.8

Q ss_pred             hhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          234 PCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .++.++|.++.++++|++|+..+.+++
T Consensus       111 ~~~~~~a~~~~~~~~~~~A~~~~~~~~  137 (186)
T 3as5_A          111 NVRFRLGVALDNLGRFDEAIDSFKIAL  137 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            567888999999999999998888775

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.05  E-value=0.014  Score=47.12  Aligned_cols=27  Identities=19%  Similarity=0.052  Sum_probs=18.3

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      ...|..++..|+|..|+..|.+++...
T Consensus        75 ~~la~~~~~~~~~~~A~~~~~~a~~~~  101 (252)
T 2ho1_A           75 AALAVVFQTEMEPKLADEEYRKALASD  101 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            345666677777777777777777653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.02  E-value=0.012  Score=49.91  Aligned_cols=28  Identities=25%  Similarity=0.156  Sum_probs=25.3

Q ss_pred             hhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          233 NPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       233 ~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..+++|+|.|++++|+|++|+....+||
T Consensus       200 ~~~~~~la~~~~~~g~~~eA~~~l~~al  227 (291)
T 3mkr_A          200 LLLLNGQAACHMAQGRWEAAEGVLQEAL  227 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3578999999999999999999999886

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=96.00  E-value=0.012  Score=50.11  Aligned_cols=76  Identities=11%  Similarity=0.022  Sum_probs=41.3

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHH---HH---HHHhhhhhhhHHHHHHHHhh
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYR---DM---ALAVKNPCHLNMAACLLKLK  247 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~---~~---~~~l~~~~~~N~A~c~lKl~  247 (261)
                      ....|..+++.|+|..|+..|++++........           .+..++-.   .+   +..-...++.|++.|++++|
T Consensus       220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  299 (368)
T 1fch_A          220 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG  299 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            445677778888888888888888875432100           00000000   00   11112345666666666666


Q ss_pred             CHHHHHHHHHhhc
Q 024876          248 RYEEAIGQCSLVS  260 (261)
Q Consensus       248 ~~~~ai~~c~~aL  260 (261)
                      +|.+|+..+.++|
T Consensus       300 ~~~~A~~~~~~al  312 (368)
T 1fch_A          300 AHREAVEHFLEAL  312 (368)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            6666666666554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=95.98  E-value=0.011  Score=49.05  Aligned_cols=68  Identities=18%  Similarity=0.088  Sum_probs=55.1

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      +..+...|..++..|+|..|+..|.+++.+......           ......++.+++.++..+|+|++|+..+.+++
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  110 (338)
T 3ro2_A           43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-----------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL  110 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc-----------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            344567799999999999999999999987643210           22345789999999999999999999998876

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=95.96  E-value=0.0091  Score=55.18  Aligned_cols=78  Identities=12%  Similarity=-0.070  Sum_probs=46.5

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHH---H---HHHHhhhhhhhHHHHHHHH
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYR---D---MALAVKNPCHLNMAACLLK  245 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~---~---~~~~l~~~~~~N~A~c~lK  245 (261)
                      ......|..++..|+|..|+..|++++.+-.....           .+..++-.   +   ++..-...+++|+|.|+++
T Consensus        24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  103 (568)
T 2vsy_A           24 VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED  103 (568)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            34556788888888999999999888876432100           00000000   0   0111123467777777777


Q ss_pred             hhCHHHHHHHHHhhc
Q 024876          246 LKRYEEAIGQCSLVS  260 (261)
Q Consensus       246 l~~~~~ai~~c~~aL  260 (261)
                      +++|++|+..+.++|
T Consensus       104 ~g~~~~A~~~~~~al  118 (568)
T 2vsy_A          104 AGQAEAAAAAYTRAH  118 (568)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            777777777777765

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=95.95  E-value=0.014  Score=45.74  Aligned_cols=76  Identities=11%  Similarity=-0.041  Sum_probs=46.8

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhcccc-----------cc-ccchhHHHHHHHh--------hhhhhhHHHHHHH
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDF-----------MF-QLFGKYRDMALAV--------KNPCHLNMAACLL  244 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~-----------~~-~~~~~~~~~~~~l--------~~~~~~N~A~c~l  244 (261)
                      ....|..++..|+|..|+..|.+++.......           .. +..++-...++..        ...++.|++.|+.
T Consensus        45 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  124 (225)
T 2vq2_A           45 WLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA  124 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHH
Confidence            34456677777888888888887776543210           01 1111111111111        1357889999999


Q ss_pred             HhhCHHHHHHHHHhhc
Q 024876          245 KLKRYEEAIGQCSLVS  260 (261)
Q Consensus       245 Kl~~~~~ai~~c~~aL  260 (261)
                      +++++++|+..+.+++
T Consensus       125 ~~~~~~~A~~~~~~~~  140 (225)
T 2vq2_A          125 KQGQFGLAEAYLKRSL  140 (225)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHH
Confidence            9999999999888875

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=95.95  E-value=0.011  Score=53.79  Aligned_cols=62  Identities=23%  Similarity=0.170  Sum_probs=49.8

Q ss_pred             cchhhHHhhhh--------hhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHH
Q 024876          185 RKMDGNALFKE--------EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC  256 (261)
Q Consensus       185 ~K~~Gn~~fk~--------~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c  256 (261)
                      ....|+.++..        |+|..|+..|++|+.+-..              ......+++|+|.||.++|+|++|+..+
T Consensus       216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~  281 (474)
T 4abn_A          216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK--------------ASSNPDLHLNRATLHKYEESYGEALEGF  281 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG--------------GGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC--------------cccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34567788888        9999999999999986321              0012468999999999999999999999


Q ss_pred             Hhhc
Q 024876          257 SLVS  260 (261)
Q Consensus       257 ~~aL  260 (261)
                      .+||
T Consensus       282 ~~al  285 (474)
T 4abn_A          282 SQAA  285 (474)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9886

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=95.95  E-value=0.012  Score=49.56  Aligned_cols=60  Identities=18%  Similarity=0.203  Sum_probs=51.2

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .....|..++..|++..|+..|++++..-...                 ...+.|+|.+++.+|++++|+....+++
T Consensus       119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-----------------~~a~~~la~~~~~~g~~~~A~~~l~~~~  178 (287)
T 3qou_A          119 LXAQQAMQLMQESNYTDALPLLXDAWQLSNQN-----------------GEIGLLLAETLIALNRSEDAEAVLXTIP  178 (287)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-----------------HHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-----------------hhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            35678899999999999999999999864321                 3589999999999999999999988875

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=95.94  E-value=0.016  Score=46.23  Aligned_cols=56  Identities=20%  Similarity=0.187  Sum_probs=30.1

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      ..|..++..|+|..|+..|++++......                 ..++.+++.|++++++|++|+..+.++
T Consensus        96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~a~~~~~~~~~~~A~~~~~~~  151 (243)
T 2q7f_A           96 GAGNVYVVKEMYKEAKDMFEKALRAGMEN-----------------GDLFYMLGTVLVKLEQPKLALPYLQRA  151 (243)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTCCS-----------------HHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            34555566666666666666666543221                 123455555555555555555555544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=95.93  E-value=0.013  Score=46.79  Aligned_cols=61  Identities=16%  Similarity=0.080  Sum_probs=50.8

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ......|..+++.|+|..|+..|++++.....                 ...++.++|.+++++++|++|+..+.+++
T Consensus        58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~  118 (243)
T 2q7f_A           58 IPYINFANLLSSVNELERALAFYDKALELDSS-----------------AATAYYGAGNVYVVKEMYKEAKDMFEKAL  118 (243)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-----------------chHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34556788899999999999999999976321                 13678999999999999999999998876

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=95.92  E-value=0.01  Score=56.56  Aligned_cols=59  Identities=17%  Similarity=0.074  Sum_probs=47.1

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ....|..++..|+|..|+..|++++..-..+                 ..+++|++.+++++++|++|+..+.+||
T Consensus       436 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~a~~~lg~~~~~~g~~~~A~~~~~~al  494 (681)
T 2pzi_A          436 PLMEVRALLDLGDVAKATRKLDDLAERVGWR-----------------WRLVWYRAVAELLTGDYDSATKHFTEVL  494 (681)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhccCcch-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455888899999999999999999864321                 3577888888888888888888888776

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=95.75  E-value=0.013  Score=54.09  Aligned_cols=76  Identities=9%  Similarity=-0.058  Sum_probs=51.6

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHH---HH---HHHhhhhhhhHHHHHHHHh-
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYR---DM---ALAVKNPCHLNMAACLLKL-  246 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~---~~---~~~l~~~~~~N~A~c~lKl-  246 (261)
                      ....|.-++..|+|.+|+..|++++..-.....           ....++-.   ++   +..-...++.|++.|+.++ 
T Consensus        60 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  139 (568)
T 2vsy_A           60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC  139 (568)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence            455678888889999999999999876433210           00001101   11   1112345789999999999 


Q ss_pred             --hCHHHHHHHHHhhc
Q 024876          247 --KRYEEAIGQCSLVS  260 (261)
Q Consensus       247 --~~~~~ai~~c~~aL  260 (261)
                        +++++|+..+.++|
T Consensus       140 ~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A          140 DWRALDVLSAQVRAAV  155 (568)
T ss_dssp             CCTTHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHH
Confidence              99999999999886

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=95.73  E-value=0.022  Score=45.86  Aligned_cols=27  Identities=30%  Similarity=0.308  Sum_probs=17.3

Q ss_pred             hhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          234 PCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .++.++|.++++++++++|+..+.+++
T Consensus       176 ~~~~~la~~~~~~g~~~~A~~~~~~~~  202 (252)
T 2ho1_A          176 SVALEMADLLYKEREYVPARQYYDLFA  202 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345666666666666666666666554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=95.70  E-value=0.02  Score=47.62  Aligned_cols=77  Identities=16%  Similarity=-0.007  Sum_probs=46.6

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHHH---H---HHHhhhhhhhHHHHHHHHh
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYRD---M---ALAVKNPCHLNMAACLLKL  246 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~~---~---~~~l~~~~~~N~A~c~lKl  246 (261)
                      .....|..+++.|+|..|+..|++++........           ....++-..   +   ...-...++.+++.|++++
T Consensus       174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  253 (327)
T 3cv0_A          174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM  253 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            3455677778888888888888888765432100           000000000   1   0111235678888888888


Q ss_pred             hCHHHHHHHHHhhc
Q 024876          247 KRYEEAIGQCSLVS  260 (261)
Q Consensus       247 ~~~~~ai~~c~~aL  260 (261)
                      |+|++|+..+.+++
T Consensus       254 g~~~~A~~~~~~a~  267 (327)
T 3cv0_A          254 SQYDLAAKQLVRAI  267 (327)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHH
Confidence            88888888887775

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=95.65  E-value=0.023  Score=47.28  Aligned_cols=79  Identities=13%  Similarity=0.022  Sum_probs=43.0

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchh---HHHH---HHHhhhhhhhHHHHHHH
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGK---YRDM---ALAVKNPCHLNMAACLL  244 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~---~~~~---~~~l~~~~~~N~A~c~l  244 (261)
                      +...-..|..++..|+|..|+..|++++........           ....++   ..++   +..-...++.++|.|+.
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  100 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT  100 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence            344456666777777777777777777654321100           000000   0000   01112346777888888


Q ss_pred             HhhCHHHHHHHHHhhc
Q 024876          245 KLKRYEEAIGQCSLVS  260 (261)
Q Consensus       245 Kl~~~~~ai~~c~~aL  260 (261)
                      ++++|.+|+..+.+++
T Consensus       101 ~~~~~~~A~~~~~~~~  116 (327)
T 3cv0_A          101 NEHNANAALASLRAWL  116 (327)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHH
Confidence            8888888887777765

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=95.54  E-value=0.028  Score=46.84  Aligned_cols=76  Identities=11%  Similarity=-0.039  Sum_probs=40.2

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHHHHHH------HhhhhhhhHHHHHHHHhh
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYRDMAL------AVKNPCHLNMAACLLKLK  247 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~~~~~------~l~~~~~~N~A~c~lKl~  247 (261)
                      ....|..++..|+|..|+..|++++........           ....++-...++      .....++.+++.++++++
T Consensus       128 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~  207 (330)
T 3hym_B          128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG  207 (330)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence            445567777777888888888777776432100           000000000000      111245566666666666


Q ss_pred             CHHHHHHHHHhhc
Q 024876          248 RYEEAIGQCSLVS  260 (261)
Q Consensus       248 ~~~~ai~~c~~aL  260 (261)
                      +|++|+..+.+++
T Consensus       208 ~~~~A~~~~~~a~  220 (330)
T 3hym_B          208 EWKTAEKWFLDAL  220 (330)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            6666666666654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=95.47  E-value=0.016  Score=50.20  Aligned_cols=77  Identities=18%  Similarity=0.043  Sum_probs=46.3

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHHHH------HHHhhhhhhhHHHHHHHHh
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYRDM------ALAVKNPCHLNMAACLLKL  246 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~~~------~~~l~~~~~~N~A~c~lKl  246 (261)
                      .....|+.+++.|+|..|+..|++++..-.....           .+..++-...      +..-....+.+++.++..+
T Consensus        69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  148 (388)
T 1w3b_A           69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKAL  148 (388)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            4567788999999999999999999986432100           0000000000      1111233566777777777


Q ss_pred             hCHHHHHHHHHhhc
Q 024876          247 KRYEEAIGQCSLVS  260 (261)
Q Consensus       247 ~~~~~ai~~c~~aL  260 (261)
                      |+|++|+....+++
T Consensus       149 g~~~~A~~~~~~al  162 (388)
T 1w3b_A          149 GRLEEAKACYLKAI  162 (388)
T ss_dssp             SCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence            77777777766654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=95.36  E-value=0.028  Score=48.59  Aligned_cols=25  Identities=16%  Similarity=0.256  Sum_probs=13.5

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHh
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAY  211 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~  211 (261)
                      ..|..+++.|++..|+..|++++..
T Consensus       242 ~l~~~~~~~g~~~~A~~~~~~al~~  266 (388)
T 1w3b_A          242 NLACVYYEQGLIDLAIDTYRRAIEL  266 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3455555555555555555555543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.09  E-value=0.037  Score=42.58  Aligned_cols=29  Identities=21%  Similarity=0.230  Sum_probs=26.7

Q ss_pred             hhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          233 NPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       233 ~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ..|+.|+|..|+|+++|..|+.+|+.+|+
T Consensus        71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            46899999999999999999999999874

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=95.07  E-value=0.0091  Score=56.90  Aligned_cols=76  Identities=8%  Similarity=-0.017  Sum_probs=55.1

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccc--------------cccchhHHHH---HHHhhhhhhhHHHHHHHHhh
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM--------------FQLFGKYRDM---ALAVKNPCHLNMAACLLKLK  247 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~--------------~~~~~~~~~~---~~~l~~~~~~N~A~c~lKl~  247 (261)
                      ....|..+++.|+|.+|+..|++|+.+-.....              .+. ...-++   +..-...+++|+|.|++++|
T Consensus       470 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g  548 (681)
T 2pzi_A          470 VWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEG  548 (681)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcC
Confidence            445688899999999999999999987543210              111 111111   22234567999999999999


Q ss_pred             CHHHHHHHHHhhcC
Q 024876          248 RYEEAIGQCSLVSK  261 (261)
Q Consensus       248 ~~~~ai~~c~~aL~  261 (261)
                      +|++|+..+++||+
T Consensus       549 ~~~~A~~~~~~al~  562 (681)
T 2pzi_A          549 DRVGAVRTLDEVPP  562 (681)
T ss_dssp             CHHHHHHHHHTSCT
T ss_pred             CHHHHHHHHHhhcc
Confidence            99999999999874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=94.96  E-value=0.046  Score=48.68  Aligned_cols=60  Identities=15%  Similarity=0.093  Sum_probs=50.9

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .....|..+++.|+|..|+..|++++..-..                 ...++++++.|++++|+|++|+....+++
T Consensus        41 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  100 (514)
T 2gw1_A           41 FYSNLSACYVSVGDLKKVVEMSTKALELKPD-----------------YSKVLLRRASANEGLGKFADAMFDLSVLS  100 (514)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHhccChH-----------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4556789999999999999999999986322                 13688999999999999999999988875

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=94.87  E-value=0.032  Score=42.86  Aligned_cols=61  Identities=8%  Similarity=-0.124  Sum_probs=49.1

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ....|..++..|+|..|+..|+++++.-...               .....+.|++.++..+|++++|+..+.++|
T Consensus       111 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~a~~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A          111 ACELAVQYNQVGRDEEALELLWNILKVNLGA---------------QDGEVKKTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT---------------TTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCccc---------------ChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            4556888899999999999999999763210               012478899999999999999999999886

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=94.86  E-value=0.057  Score=46.43  Aligned_cols=66  Identities=8%  Similarity=-0.037  Sum_probs=51.3

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .....|..++..|+|..|...|.+++.+......           ......+++|++.+++.+|+|.+|+..+.++|
T Consensus        55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al  120 (373)
T 1hz4_A           55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV-----------WHYALWSLIQQSEILFAQGFLQTAWETQEKAF  120 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc-----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3455678888899999999999999987543100           12235678999999999999999999999886

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.72  E-value=0.048  Score=47.75  Aligned_cols=66  Identities=6%  Similarity=-0.021  Sum_probs=53.7

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .....|+-++..|+|..|+..|++++..+.....           +...+.+++|++.+|+.+++|.+|....++++
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  202 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDD-----------KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR  202 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC-----------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc-----------chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            3456789999999999999999999987654211           12346789999999999999999999988775

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=94.67  E-value=0.031  Score=43.31  Aligned_cols=51  Identities=18%  Similarity=0.079  Sum_probs=42.1

Q ss_pred             hhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCH----------HHHHHHHHhhcC
Q 024876          194 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY----------EEAIGQCSLVSK  261 (261)
Q Consensus       194 k~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~----------~~ai~~c~~aL~  261 (261)
                      +-+.|..|+..|++++.+-..                 ....++|++.|++.++++          ++|+..+.+||+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~-----------------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~   74 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPL-----------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL   74 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCC-----------------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH
Confidence            557899999999999986432                 135899999999999876          599999999873

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=94.60  E-value=0.033  Score=38.27  Aligned_cols=37  Identities=24%  Similarity=0.230  Sum_probs=32.1

Q ss_pred             HhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhcc
Q 024876          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (261)
Q Consensus       178 ~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  214 (261)
                      .+..|..+-.++.+.=+.|+|.+|+.+|..|+.+|-.
T Consensus         7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   43 (83)
T 2v6y_A            7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ   43 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            5667777888888889999999999999999998854

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=94.58  E-value=0.017  Score=40.08  Aligned_cols=62  Identities=11%  Similarity=0.128  Sum_probs=47.0

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHH
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC  256 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c  256 (261)
                      .....|..+++.|+|..|+..|++++.+.....      .     ......++.+++.|+..++++..|+...
T Consensus        40 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           40 GYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE------H-----VAIRSKLQYRLELAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT------S-----HHHHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc------H-----HHHHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence            355678999999999999999999998643210      0     1224568899999999999887776543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=94.57  E-value=0.058  Score=38.05  Aligned_cols=44  Identities=9%  Similarity=0.137  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          200 EAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       200 ~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .|+..|++++..-...                 ..++.|+|.+++.+++|++|+..+.++|
T Consensus         3 ~a~~~~~~al~~~p~~-----------------~~~~~~lg~~~~~~g~~~~A~~~~~~al   46 (115)
T 2kat_A            3 AITERLEAMLAQGTDN-----------------MLLRFTLGKTYAEHEQFDAALPHLRAAL   46 (115)
T ss_dssp             CHHHHHHHHHTTTCCC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCc-----------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            5788899998753321                 2588999999999999999999999886

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=94.44  E-value=0.06  Score=48.37  Aligned_cols=55  Identities=18%  Similarity=0.244  Sum_probs=46.1

Q ss_pred             hHHhhhh----------hhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876          189 GNALFKE----------EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (261)
Q Consensus       189 Gn~~fk~----------~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~  258 (261)
                      |..++..          |+|..|+..|++++......                 ..++.+++.|+.++|++.+|+..+.+
T Consensus       425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~  487 (537)
T 3fp2_A          425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS-----------------EQAKIGLAQLKLQMEKIDEAIELFED  487 (537)
T ss_dssp             HHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            5666666          99999999999999864321                 25789999999999999999999998


Q ss_pred             hc
Q 024876          259 VS  260 (261)
Q Consensus       259 aL  260 (261)
                      ++
T Consensus       488 al  489 (537)
T 3fp2_A          488 SA  489 (537)
T ss_dssp             HH
T ss_pred             HH
Confidence            86

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=94.35  E-value=0.058  Score=44.21  Aligned_cols=76  Identities=13%  Similarity=0.074  Sum_probs=44.0

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccc--------cc-----cccchh----HHHHHHHhhhhhhhHHHHHHHH--
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDD--------FM-----FQLFGK----YRDMALAVKNPCHLNMAACLLK--  245 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~--------~~-----~~~~~~----~~~~~~~l~~~~~~N~A~c~lK--  245 (261)
                      ....|..++..++|..|+..|++++..-...        ..     ....++    -.+.+..-....+.|++.++..  
T Consensus         9 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~   88 (273)
T 1ouv_A            9 LVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQ   88 (273)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCC
Confidence            4456788888888888888888887621100        00     000000    0001111134567777888887  


Q ss_pred             --hhCHHHHHHHHHhhc
Q 024876          246 --LKRYEEAIGQCSLVS  260 (261)
Q Consensus       246 --l~~~~~ai~~c~~aL  260 (261)
                        .+++.+|+....+++
T Consensus        89 ~~~~~~~~A~~~~~~a~  105 (273)
T 1ouv_A           89 GVSQNTNKALQYYSKAC  105 (273)
T ss_dssp             SSCCCHHHHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHHH
Confidence              788888887777765

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=94.25  E-value=0.062  Score=49.09  Aligned_cols=61  Identities=18%  Similarity=0.088  Sum_probs=51.4

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ......|..+++.|++..|+..|++++..-...                 ..++.+++.+|.++|+|++|+....++|
T Consensus       517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~l  577 (597)
T 2xpi_A          517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTND-----------------ANVHTAIALVYLHKKIPGLAITHLHESL  577 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----------------hHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            345567888899999999999999999863211                 3688999999999999999999999886

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=94.22  E-value=0.071  Score=45.80  Aligned_cols=67  Identities=19%  Similarity=0.127  Sum_probs=41.8

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ....|..++..|+|..|+..|++++...........         .....++.|++.++..+|+|++|+..+.++|
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  162 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL---------PMHEFLVRIRAQLLWAWARLDEAEASARSGI  162 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC---------cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            345688889999999999999999987642110000         0122345556666666666666655555543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=93.73  E-value=0.08  Score=43.36  Aligned_cols=76  Identities=13%  Similarity=0.057  Sum_probs=50.6

Q ss_pred             cchhhHHhhh----hhhHHHHHHHHHHHHHhhcccc--------c-----cccchh----HHHHHHHhhhhhhhHHHHHH
Q 024876          185 RKMDGNALFK----EEKLEEAMQQYEMAIAYMGDDF--------M-----FQLFGK----YRDMALAVKNPCHLNMAACL  243 (261)
Q Consensus       185 ~K~~Gn~~fk----~~~~~~A~~~Y~kal~~l~~~~--------~-----~~~~~~----~~~~~~~l~~~~~~N~A~c~  243 (261)
                      ....|..++.    .+++..|+..|++++..-....        .     ....++    -...+..-...+++|++.++
T Consensus        41 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~  120 (273)
T 1ouv_A           41 CFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIY  120 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence            4456777788    8999999999999887531100        0     000010    01112222346789999999


Q ss_pred             HH----hhCHHHHHHHHHhhc
Q 024876          244 LK----LKRYEEAIGQCSLVS  260 (261)
Q Consensus       244 lK----l~~~~~ai~~c~~aL  260 (261)
                      .+    .+++++|+..+.+|+
T Consensus       121 ~~~~~~~~~~~~A~~~~~~a~  141 (273)
T 1ouv_A          121 HDGKVVTRDFKKAVEYFTKAC  141 (273)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHH
T ss_pred             HcCCCcccCHHHHHHHHHHHH
Confidence            99    999999999999886

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=93.68  E-value=0.083  Score=38.70  Aligned_cols=44  Identities=25%  Similarity=0.239  Sum_probs=35.6

Q ss_pred             CCCchh-hHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhcc
Q 024876          171 SDMTVE-ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (261)
Q Consensus       171 ~~l~~e-e~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  214 (261)
                      ..|+.. ..+..|..+-.++...=+.++|..|+.+|..|+.+|-.
T Consensus         6 ~~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~   50 (117)
T 2cpt_A            6 SGMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   50 (117)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            345544 56777777888888888999999999999999998754

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=93.68  E-value=0.033  Score=50.44  Aligned_cols=51  Identities=18%  Similarity=0.269  Sum_probs=29.8

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      .....|+.+|..|+|..|...|.++                         .-+.++|.|+.++|+|++|+..+.+|
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a-------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV-------------------------SNFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             -------------CTTTHHHHHHHT-------------------------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-------------------------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence            6778899999999999999999866                         25667778888888888877777665

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.35  E-value=0.21  Score=34.63  Aligned_cols=59  Identities=19%  Similarity=0.144  Sum_probs=44.7

Q ss_pred             chhhHHhhhhhh---HHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          186 KMDGNALFKEEK---LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       186 K~~Gn~~fk~~~---~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      -..|..+|-.++   ...|...+++|+.+-..+                 ...++.++..+++.|+|.+|+....++|+
T Consensus        10 ~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-----------------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A           10 AAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN-----------------EAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             HHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            345666654444   689999999999863321                 35677789999999999999999888774

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=93.21  E-value=0.079  Score=39.32  Aligned_cols=30  Identities=20%  Similarity=0.239  Sum_probs=26.8

Q ss_pred             hhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          232 KNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       232 ~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      +--|+..+|..++|+|+|..|+.+|+..|+
T Consensus        73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           73 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            346899999999999999999999998873

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=92.78  E-value=0.19  Score=45.86  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=14.3

Q ss_pred             hhHHhhhhhhHHHHHHHHHHHHHh
Q 024876          188 DGNALFKEEKLEEAMQQYEMAIAY  211 (261)
Q Consensus       188 ~Gn~~fk~~~~~~A~~~Y~kal~~  211 (261)
                      .|..+++.|++..|+..|.+++..
T Consensus       379 l~~~~~~~g~~~~A~~~~~~~~~~  402 (597)
T 2xpi_A          379 VGIYYLCVNKISEARRYFSKSSTM  402 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh
Confidence            355556666666666666666553

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=92.59  E-value=0.19  Score=44.34  Aligned_cols=62  Identities=16%  Similarity=0.053  Sum_probs=45.6

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHH-HHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA-CLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~-c~lKl~~~~~ai~~c~~aL  260 (261)
                      ....|+.++..|+|.+|+..|++++..-..       ..       ....++++++. ++.+++++++|+.++.+||
T Consensus       337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal  399 (472)
T 4g1t_A          337 CSILASLHALADQYEEAEYYFQKEFSKELT-------PV-------AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV  399 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCCC-------HH-------HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhccHHHHHHHHHHHHhcCCC-------Ch-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            446789999999999999999999975221       11       11235566654 4567899999999999886

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=92.56  E-value=0.19  Score=37.20  Aligned_cols=55  Identities=16%  Similarity=0.126  Sum_probs=38.2

Q ss_pred             hhhHHhhh----hhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHH----hhCHHHHHHHHHh
Q 024876          187 MDGNALFK----EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK----LKRYEEAIGQCSL  258 (261)
Q Consensus       187 ~~Gn~~fk----~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lK----l~~~~~ai~~c~~  258 (261)
                      ..|.-++.    .+++.+|+..|++|...-                   ....+.|++.+|..    .+++.+|+....+
T Consensus        62 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-------------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~  122 (138)
T 1klx_A           62 FLGDFYENGKYVKKDLRKAAQYYSKACGLN-------------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEK  122 (138)
T ss_dssp             HHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCccHHHHHHHHHHHHcCC-------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence            34444444    566666666666666431                   13578899999999    8999999998887


Q ss_pred             hc
Q 024876          259 VS  260 (261)
Q Consensus       259 aL  260 (261)
                      |.
T Consensus       123 Aa  124 (138)
T 1klx_A          123 AC  124 (138)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=92.50  E-value=0.16  Score=42.46  Aligned_cols=76  Identities=13%  Similarity=-0.081  Sum_probs=51.5

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------cccchhHHHH------HHHhhhhhhhHHHHHHHHhh
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLFGKYRDM------ALAVKNPCHLNMAACLLKLK  247 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~~~~~------~~~l~~~~~~N~A~c~lKl~  247 (261)
                      ....|.-+...|++..|+..|++++..-.....           .....+....      ...-...+++|+|.+++.+|
T Consensus       154 ~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g  233 (287)
T 3qou_A          154 GLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVG  233 (287)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcc
Confidence            445699999999999999999998764321000           0000000111      11223467999999999999


Q ss_pred             CHHHHHHHHHhhc
Q 024876          248 RYEEAIGQCSLVS  260 (261)
Q Consensus       248 ~~~~ai~~c~~aL  260 (261)
                      ++++|+....++|
T Consensus       234 ~~~~A~~~l~~~l  246 (287)
T 3qou_A          234 RNEEALELLFGHL  246 (287)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            9999999998876

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=92.49  E-value=0.2  Score=42.11  Aligned_cols=56  Identities=13%  Similarity=0.032  Sum_probs=34.7

Q ss_pred             hhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHH-HHHHHhhc
Q 024876          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEA-IGQCSLVS  260 (261)
Q Consensus       188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~a-i~~c~~aL  260 (261)
                      .|.-+++.|+|..|...|++++..-.                 -....++|++.++..+|++.++ ....++++
T Consensus       206 la~~~~~~g~~~eA~~~l~~al~~~p-----------------~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~  262 (291)
T 3mkr_A          206 QAACHMAQGRWEAAEGVLQEALDKDS-----------------GHPETLINLVVLSQHLGKPPEVTNRYLSQLK  262 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            34444455555555555555554321                 1234789999999999999875 45656654

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=92.48  E-value=0.096  Score=35.89  Aligned_cols=43  Identities=23%  Similarity=0.242  Sum_probs=35.3

Q ss_pred             CCch-hhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhcc
Q 024876          172 DMTV-EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (261)
Q Consensus       172 ~l~~-ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  214 (261)
                      .|++ ...++.|..+-.+|.+.=+.|+|.+|+.+|..|+.+|..
T Consensus         8 ~~~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   51 (83)
T 2w2u_A            8 HMSAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ   51 (83)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3443 346788888888999999999999999999999998854

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=92.38  E-value=0.26  Score=41.42  Aligned_cols=57  Identities=9%  Similarity=-0.053  Sum_probs=38.6

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhh-hhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP-CHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~-~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..|+-+.+.|++..|...|++++.+-...                 .. +++|++.++.+++++++|+....+|+
T Consensus       104 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  161 (308)
T 2ond_A          104 AYADYEESRMKYEKVHSIYNRLLAIEDID-----------------PTLVYIQYMKFARRAEGIKSGRMIFKKAR  161 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSSSSC-----------------THHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccccC-----------------ccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34555566778888888888888742211                 11 67777777777777777777777765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=92.32  E-value=0.12  Score=41.09  Aligned_cols=80  Identities=13%  Similarity=0.025  Sum_probs=52.3

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccc--------cccc-cchhHH-------HHHHHhhhhhhhHHHHHHHH
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDD--------FMFQ-LFGKYR-------DMALAVKNPCHLNMAACLLK  245 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~--------~~~~-~~~~~~-------~~~~~l~~~~~~N~A~c~lK  245 (261)
                      +......|..++..+++.+|+..|++|+..-...        .... ...+..       ..++.-....++|++.+|+.
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~   97 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVN   97 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence            3456677888899999999999999998642110        0011 000111       12233344567888999888


Q ss_pred             ----hhCHHHHHHHHHhhcC
Q 024876          246 ----LKRYEEAIGQCSLVSK  261 (261)
Q Consensus       246 ----l~~~~~ai~~c~~aL~  261 (261)
                          .+++.+|+....+|++
T Consensus        98 g~g~~~d~~~A~~~~~~A~~  117 (212)
T 3rjv_A           98 RQAGATDVAHAITLLQDAAR  117 (212)
T ss_dssp             GGGSSCCHHHHHHHHHHHTS
T ss_pred             CCCCccCHHHHHHHHHHHHH
Confidence                8889999988888763

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=92.26  E-value=0.21  Score=32.85  Aligned_cols=46  Identities=22%  Similarity=0.289  Sum_probs=36.2

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhh
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK  247 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~  247 (261)
                      ....|..+++.|+|..|+..|++++......                 ...+.|++.++.++|
T Consensus        46 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-----------------~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNN-----------------AEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHhcC
Confidence            4567888999999999999999999863221                 256788999888764

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=91.83  E-value=0.2  Score=34.56  Aligned_cols=34  Identities=21%  Similarity=0.163  Sum_probs=26.6

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhcc
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  214 (261)
                      .+..+-.++...=+.|+|..|+.+|..|+.+|-.
T Consensus        15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~   48 (86)
T 4a5x_A           15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ   48 (86)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3444555667777899999999999999998754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=91.17  E-value=0.24  Score=50.95  Aligned_cols=52  Identities=17%  Similarity=0.256  Sum_probs=43.5

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+...|+.+|..|+|..|+..|.+|-                         -|..+|.|+.++|+|+.|+..+.+|.
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA~-------------------------ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNVS-------------------------NFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhh-------------------------HHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence            34468999999999999999999863                         46678899999999999999888774

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=91.05  E-value=0.29  Score=41.47  Aligned_cols=27  Identities=15%  Similarity=0.104  Sum_probs=19.9

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHh
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAY  211 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~  211 (261)
                      .-..|..+|+.++|..|+..|++++.+
T Consensus       138 ~~~~a~l~~~~~r~~dA~~~l~~a~~~  164 (282)
T 4f3v_A          138 AWMKAVVYGAAERWTDVIDQVKSAGKW  164 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence            345667788888888888888766553

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=90.91  E-value=0.23  Score=33.98  Aligned_cols=38  Identities=16%  Similarity=0.091  Sum_probs=30.5

Q ss_pred             hHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhcc
Q 024876          177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (261)
Q Consensus       177 e~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  214 (261)
                      ..+..+..+-.++...=+.|+|..|+.+|..|+.+|-.
T Consensus         8 ~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~   45 (85)
T 2v6x_A            8 DFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML   45 (85)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            34556666667777777899999999999999998754

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=90.25  E-value=0.84  Score=35.41  Aligned_cols=69  Identities=9%  Similarity=0.002  Sum_probs=55.0

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+.+....+|..+.|..|+..+..++.+.+.+...- +       -.++...+..+|..++..++|..|...+.+||
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~-s-------p~~~~~~l~~ladalf~~~eyrrA~~~y~qAL   90 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELF-S-------PPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL   90 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSS-C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccc-c-------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            456677888999999999999999998865431110 0       24456788999999999999999999999987

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=89.99  E-value=0.48  Score=45.70  Aligned_cols=55  Identities=24%  Similarity=0.338  Sum_probs=45.5

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHH
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  257 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~  257 (261)
                      -.++.-+.++|+|+.|+..-++|+.+....+                 .++.+||.||+++++|+.|+-.-|
T Consensus       341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF-----------------~tW~~La~vYi~l~d~e~ALLtLN  395 (754)
T 4gns_B          341 NIQTNFLLNRGDYELALGVSNTSTELALDSF-----------------ESWYNLARCHIKKEEYEKALFAIN  395 (754)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH-----------------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhccCcHHHHHHHHHHHHhcCchhh-----------------HHHHHHHHHHHHhccHHHHHHHHh
Confidence            3345556789999999999999999876532                 588999999999999999997654

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=89.91  E-value=0.4  Score=33.48  Aligned_cols=64  Identities=16%  Similarity=0.022  Sum_probs=41.0

Q ss_pred             HhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHH
Q 024876          178 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAAC  242 (261)
Q Consensus       178 ~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c  242 (261)
                      .+..|..+-.++..+=+.|+|..|+.+|..|+.+|-...... .+......-.-++.-|+++|-.
T Consensus        11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e-~~~~~k~~l~~K~~eYl~RAE~   74 (93)
T 1wfd_A           11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGT-KESSKRCVLRTKISGYMDRAEN   74 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHH
Confidence            455666677777888889999999999999999875431111 1222233333444556666544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=89.64  E-value=0.23  Score=34.25  Aligned_cols=28  Identities=14%  Similarity=0.017  Sum_probs=25.8

Q ss_pred             hhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          233 NPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       233 ~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..++.|+|.|++++|+|++|+..+.++|
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al   34 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELV   34 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3578999999999999999999999986

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=89.63  E-value=0.5  Score=34.83  Aligned_cols=54  Identities=9%  Similarity=-0.117  Sum_probs=43.1

Q ss_pred             hhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHH----hhCHHHHHHHHHhhc
Q 024876          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK----LKRYEEAIGQCSLVS  260 (261)
Q Consensus       188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lK----l~~~~~ai~~c~~aL  260 (261)
                      .|.-++..+.+.+|+..|++|...-                   ....++|++.+|..    .+++.+|+....+|.
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g-------------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa   88 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN-------------------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC   88 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC-------------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence            6666677777778888888888641                   13688999999999    899999999888774

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=89.24  E-value=0.58  Score=39.61  Aligned_cols=62  Identities=13%  Similarity=-0.022  Sum_probs=47.4

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .-..|.-+-..|+|..|+..|.+++.--. . +            .......+|+++|+.++|+.++|+...++++
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~-~-P------------~~~~da~~~~glaL~~lGr~deA~~~l~~a~  235 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEANDSPA-G-E------------ACARAIAWYLAMARRSQGNESAAVALLEWLQ  235 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSTT-T-T------------TTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCC-C-c------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34457788889999999999999984210 0 0            0023578999999999999999999888775

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=89.04  E-value=0.67  Score=38.77  Aligned_cols=27  Identities=15%  Similarity=-0.029  Sum_probs=19.0

Q ss_pred             hhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          234 PCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       234 ~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+++|++..+.++|++++|+....+||
T Consensus       204 ~~~~~~~~~~~~~g~~~~A~~~~~~al  230 (308)
T 2ond_A          204 EYVLAYIDYLSHLNEDNNTRVLFERVL  230 (308)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            456777777777777777777766664

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=89.01  E-value=0.47  Score=37.52  Aligned_cols=28  Identities=7%  Similarity=-0.142  Sum_probs=25.7

Q ss_pred             hhhhhHHHHHHHH----hhCHHHHHHHHHhhc
Q 024876          233 NPCHLNMAACLLK----LKRYEEAIGQCSLVS  260 (261)
Q Consensus       233 ~~~~~N~A~c~lK----l~~~~~ai~~c~~aL  260 (261)
                      ...++|++.+|..    .+++.+|+....+|+
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            5789999999999    899999999998876

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=87.68  E-value=0.46  Score=35.48  Aligned_cols=30  Identities=17%  Similarity=0.216  Sum_probs=27.0

Q ss_pred             hhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          232 KNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       232 ~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      +--|+.-+|..+.|+|+|..|+..|+..|+
T Consensus        77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            346889999999999999999999998874

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=86.88  E-value=0.35  Score=36.59  Aligned_cols=29  Identities=17%  Similarity=0.193  Sum_probs=26.2

Q ss_pred             hhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          233 NPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       233 ~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      --|+..+|..+.|+++|..|..+|+..|+
T Consensus        77 RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~  105 (144)
T 1y8m_A           77 RECLYYLTIGCYKLGEYSMAKRYVDTLFE  105 (144)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            45889999999999999999999998873

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=86.39  E-value=0.81  Score=40.98  Aligned_cols=28  Identities=11%  Similarity=0.143  Sum_probs=23.3

Q ss_pred             hhhhhHHHHHHHH----hhCHHHHHHHHHhhc
Q 024876          233 NPCHLNMAACLLK----LKRYEEAIGQCSLVS  260 (261)
Q Consensus       233 ~~~~~N~A~c~lK----l~~~~~ai~~c~~aL  260 (261)
                      ...+.|++.+|.+    .+++.+|+..+.+|+
T Consensus       399 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  430 (490)
T 2xm6_A          399 SAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS  430 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            4577889999998    889999998888775

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.29  E-value=0.65  Score=41.58  Aligned_cols=63  Identities=10%  Similarity=-0.078  Sum_probs=52.1

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      ......|..+++.|+|..|++.|.++..++...              ..++.++++...+++..++|..|....+++
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~--------------~~kid~~l~~irl~l~~~d~~~~~~~~~ka  194 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST--------------GAKIDVMLTIARLGFFYNDQLYVKEKLEAV  194 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC--------------CSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh--------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            346678999999999999999999998876432              234678888999999999999999888776

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=83.59  E-value=0.47  Score=42.47  Aligned_cols=73  Identities=15%  Similarity=0.003  Sum_probs=41.3

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhhccccc---------cccc---hh----HHHHHHHhhhhhhhHHHHHHHHhh---
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFM---------FQLF---GK----YRDMALAVKNPCHLNMAACLLKLK---  247 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~---------~~~~---~~----~~~~~~~l~~~~~~N~A~c~lKl~---  247 (261)
                      ..|+.++++|+|..|+..|++++..-...-.         ....   ++    -+..+.. ....+.|++.++...+   
T Consensus         8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~   86 (452)
T 3e4b_A            8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGAT   86 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC-----------------------------CHHHHHHHHHTC--CC
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCC
Confidence            3688899999999999999999865221100         0000   00    0011222 4556778888555554   


Q ss_pred             --CHHHHHHHHHhhc
Q 024876          248 --RYEEAIGQCSLVS  260 (261)
Q Consensus       248 --~~~~ai~~c~~aL  260 (261)
                        ++.+|+....+|+
T Consensus        87 ~~~~~~A~~~~~~Aa  101 (452)
T 3e4b_A           87 EAEHHEAESLLKKAF  101 (452)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHH
Confidence              7788888777765

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.58  E-value=3.5  Score=29.80  Aligned_cols=58  Identities=16%  Similarity=0.111  Sum_probs=44.3

Q ss_pred             hhhhHHHHHHHHHHHHHhhccc--cc---cccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHH
Q 024876          194 KEEKLEEAMQQYEMAIAYMGDD--FM---FQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEE  251 (261)
Q Consensus       194 k~~~~~~A~~~Y~kal~~l~~~--~~---~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~  251 (261)
                      ..|+-..|+.+|+++|..|..-  .+   .+...+.|++.+.|..+...||..+.-.|+....
T Consensus        34 E~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~   96 (116)
T 2dl1_A           34 ELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEK   96 (116)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3577788889999988887542  11   1244678999999999999999999988875443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=83.17  E-value=0.73  Score=31.78  Aligned_cols=30  Identities=13%  Similarity=0.199  Sum_probs=25.5

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMG  213 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~  213 (261)
                      ...-.|+.+|+.|+|..|+..|++++....
T Consensus        45 A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A           45 ALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            345569999999999999999999997643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=82.87  E-value=0.99  Score=46.57  Aligned_cols=25  Identities=8%  Similarity=0.117  Sum_probs=14.4

Q ss_pred             hhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          235 CHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       235 ~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      .|.+++.|+.++|+|++|+.....|
T Consensus      1136 ay~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A         1136 SYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4555666666666666666655443

>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*

Probab=81.93  E-value=3.2  Score=28.53  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=29.6

Q ss_pred             hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG  213 (261)
Q Consensus       180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~  213 (261)
                      ..+..+-.+|..+|+.+||..|+..++++...-+
T Consensus        51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te   84 (106)
T 2vkj_A           51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSD   84 (106)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence            5667778899999999999999999999997644

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=81.00  E-value=1.2  Score=30.88  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=30.8

Q ss_pred             hhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhcc
Q 024876          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  214 (261)
Q Consensus       179 ~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~  214 (261)
                      +..|...--++..+.+.|+|..||.++++|..+|..
T Consensus        12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e   47 (97)
T 2crb_A           12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   47 (97)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            455666777788899999999999999999999865

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=80.97  E-value=2  Score=38.75  Aligned_cols=23  Identities=17%  Similarity=0.114  Sum_probs=18.5

Q ss_pred             hHHhhhhhhHHHHHHHHHHHHHh
Q 024876          189 GNALFKEEKLEEAMQQYEMAIAY  211 (261)
Q Consensus       189 Gn~~fk~~~~~~A~~~Y~kal~~  211 (261)
                      |.-+.+.|++.+|...|++++..
T Consensus       328 ~~~~~~~g~~~~A~~~~~~al~~  350 (530)
T 2ooe_A          328 ADYEESRMKYEKVHSIYNRLLAI  350 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHhcCCHHHHHHHHHHHhCc
Confidence            45556788999999999999975

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=80.51  E-value=2.1  Score=28.53  Aligned_cols=30  Identities=27%  Similarity=0.274  Sum_probs=25.6

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMG  213 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~  213 (261)
                      .....|..+++.|+|..|+..|++++.+-.
T Consensus        37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   66 (99)
T 2kc7_A           37 AYYLMGNAYRKLGDWQKALNNYQSAIELNP   66 (99)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            445678899999999999999999998743

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=80.20  E-value=2.4  Score=39.26  Aligned_cols=15  Identities=7%  Similarity=0.087  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHhh
Q 024876          198 LEEAMQQYEMAIAYM  212 (261)
Q Consensus       198 ~~~A~~~Y~kal~~l  212 (261)
                      |.+|+..|.+++..-
T Consensus        89 ~~~eL~~~~~~l~~~  103 (567)
T 1dce_A           89 VKAELGFLESCLRVN  103 (567)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhC
Confidence            888888888888654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	261
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	2e-12
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	2e-11
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	3e-11
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	4e-11
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-10
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	2e-10
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	1e-09
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	2e-09
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	6e-09
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	3e-08
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	1e-07
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	3e-07
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	6e-07
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	9e-06
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	1e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.002

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 2e-12
 Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 53  KVTKQIIKEGHG-QKPSKYSTCFLHYRAWAE------STRHKFDDTWLEQQPLEMVLGKE 105
           K TK ++K+G     P K       Y    +      +            +PL   +   
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKV-GV 60

Query: 106 KKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162
            K + G    + +M  GE A L +  E  YGK+G      + P A L +EV L+  D
Sbjct: 61  GKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQ-PDAKIPPNAKLTFEVELVDID 116

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 57.6 bits (138), Expect = 2e-11
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 7/111 (6%)

Query: 57  QIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFD----DTWLEQQPLEMVLGKEKKEMTGL 112
                G+G +  K      HY    E+ +           L  +     + K   +    
Sbjct: 13  CDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILG 72

Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGS---FSFPNVSPMADLVYEVVLIG 160
           + G+  M  G    L +  EL YG  G+        + P + L++++  IG
Sbjct: 73  SDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIG 123

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (137), Expect = 3e-11
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 7/114 (6%)

Query: 54  VTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           + ++I   G G  KP++ +   +    + +            +   E+  G+      GL
Sbjct: 10  IIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF-----DQRELRFEIGEGENLDLPYGL 64

Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 166
              +  M+ GEH+++++     +G  G      + P A+L YE+ L  F++ KE
Sbjct: 65  ERAIQRMEKGEHSIVYLKPSYAFGSVGK-EKFQIPPNAELKYELHLKSFEKAKE 117

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 56.6 bits (136), Expect = 4e-11
 Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 12/125 (9%)

Query: 38  DGPPKVDSEVEVLHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQ 96
           D  PK D         V K I KEG G  KP+  +T  +HY    E+   KFD +     
Sbjct: 3   DITPKKDG-------GVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGT-KFDSSRDRGD 54

Query: 97  PLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEV 156
                LG+         +GV++M  GE A   +  + GYG  GS   P +   A L++EV
Sbjct: 55  QFSFNLGRGNVIKGW-DLGVATMTKGEVAEFTIRSDYGYGDAGSP--PKIPGGATLIFEV 111

Query: 157 VLIGF 161
            L  +
Sbjct: 112 ELFEW 116

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 57.2 bits (137), Expect = 1e-10
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 7/120 (5%)

Query: 42  KVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMV 101
             +  V+     +  Q+++ G G+ P    T  ++Y+      + +FD+++   +PL   
Sbjct: 97  AKEKGVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGK-EFDNSYTRGEPLSFR 155

Query: 102 LGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
           L        G   G+ ++K G    L +  EL YGK G    P + P + LV++V L+  
Sbjct: 156 LDGVIP---GWTEGLKNIKKGGKIKLVIPPELAYGKAGV---PGIPPNSTLVFDVELLDV 209

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 54.7 bits (131), Expect = 2e-10
 Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 7/111 (6%)

Query: 54  VTKQIIKEGHG-QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           + ++  + G G   P++ +   +H                       +  G++     G+
Sbjct: 10  IIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVF-----DCRDVAFTVGEGEDHDIPIGI 64

Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE 163
              +  M+  E  +LH+G   G+G+ G      + P A+L+YEV L  F++
Sbjct: 65  DKALEKMQREEQCILHLGPRYGFGEAGK-PKFGIEPNAELIYEVTLKSFEK 114

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (125), Expect = 1e-09
 Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 5/116 (4%)

Query: 48  EVLHEKVTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEK 106
           EV+   V    I  G G   P       +HY    E    KFD +     P +       
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLE-NGQKFDSSVDRGSPFQCN-IGVG 59

Query: 107 KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162
           + + G  +G+  +  GE A L +     YG  G      + P + LV++V L+  +
Sbjct: 60  QVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRG--FPGLIPPNSTLVFDVELLKVN 113

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 2e-09
 Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 14/126 (11%)

Query: 38  DGPPKVDSEVEVLHEKVTKQIIKEGHG-QKPSKYSTCFLHYRAWAES-TRHKFDDTWLEQ 95
           D  PK D         V K I +EG G + P      F+HY  W    T+        ++
Sbjct: 4   DISPKQDE-------GVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDK 56

Query: 96  QPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYE 155
              ++  G+  K           MK GE   +    E  YG  GS   P + P A LV+E
Sbjct: 57  FSFDLGKGEVIKAWDIAIAT---MKVGEVCHITCKPEYAYGSAGSP--PKIPPNATLVFE 111

Query: 156 VVLIGF 161
           V L  F
Sbjct: 112 VELFEF 117

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 6e-09
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 5/110 (4%)

Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V  + I  G G+  P +  TC +HY    E  + KFD +    +P + +LGK++      
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNKPFKFMLGKQEVIRG-W 59

Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162
             GV+ M  G+ A L +  +  YG  G      + P A LV++V L+  +
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHP--GIIPPHATLVFDVELLKLE 107

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 48.6 bits (115), Expect = 3e-08
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 5/109 (4%)

Query: 54  VTKQIIKEGHGQK-PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112
           V K + + GHG++ P      ++HY     + + KFD +    +P    +G + + +   
Sbjct: 6   VLKIVKRVGHGEETPMIGDRVYVHYNGKLANGK-KFDSSHDRNEPFVFSIG-KGQVIKAW 63

Query: 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
            IGV++MK GE   L    E  YG  GS   P +   A L +EV L+ F
Sbjct: 64  DIGVATMKKGEICHLLCKPEYAYGATGSL--PKIPSNATLFFEVELLDF 110

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 168 KARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDM 227
           K+  D T EE++ +A   K +GN  FK+ ++ EA+ +Y+ A+ +      +       D 
Sbjct: 3   KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD-DQILLDK 61

Query: 228 ALAVKNPCHLNMAACLLKLKRYEEAIGQC 256
              ++  C+LN+A C  K K Y +AI   
Sbjct: 62  KKNIEISCNLNLATCYNKNKDYPKAIDHA 90

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 47.5 bits (112), Expect = 3e-07
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 6/123 (4%)

Query: 42  KVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMV 101
           K    V VL   +  ++I  G+G KP K  T  + Y                  +P    
Sbjct: 88  KNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEK-TGKPATFQ 146

Query: 102 LGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 161
           + +     T     +  M AG    ++V   L YG         + P   L++++ LI  
Sbjct: 147 VSQVIPGWT---EALQLMPAGSTWEIYVPSGLAYGPRS--VGGPIGPNETLIFKIHLISV 201

Query: 162 DET 164
            ++
Sbjct: 202 KKS 204

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 46.1 bits (108), Expect = 6e-07
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 172 DMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAV 231
           +M  +E++  A   K  G   FK  K  +A+ QY   ++++  +  + L  K    + + 
Sbjct: 5   EMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEME--YGLSEKESKASESF 62

Query: 232 KNPCHLNMAACLLKLKRYEEAIGQC 256
                LN+A C LKL+ Y +A+  C
Sbjct: 63  LLAAFLNLAMCYLKLREYTKAVECC 87

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 9e-06
 Identities = 17/71 (23%), Positives = 34/71 (47%)

Query: 172 DMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAV 231
           +M  EE++  +   K  G   FKE K ++A+ QY+  ++++  +  F      +  AL +
Sbjct: 3   EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL 62

Query: 232 KNPCHLNMAAC 242
            +  +L M   
Sbjct: 63  ASHLNLAMCHL 73

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 5/80 (6%)

Query: 177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCH 236
           + +  A     D        + +EA      A+         + F             CH
Sbjct: 4   KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFD-----AFCH 58

Query: 237 LNMAACLLKLKRYEEAIGQC 256
             +A  L  L+ ++EA+   
Sbjct: 59  AGLAEALAGLRSFDEALHSA 78

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 17/90 (18%)

Query: 181 AADRRKMDGNALFKEEKLEEAMQQYEMAIA----------------YMGDDFMFQLFGKY 224
           +A   K  GN LF   K  EA   Y  AI                          L    
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 225 RDMALAVKNP-CHLNMAACLLKLKRYEEAI 253
           R + L  ++   H  +  C L+++ Y+EAI
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAI 92

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 5/65 (7%), Positives = 17/65 (26%), Gaps = 17/65 (26%)

Query: 189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 248
            +  ++    E A +          D+                     L +++   + +R
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNT-----------------GVLLLLSSIHFQCRR 48

Query: 249 YEEAI 253
            + + 
Sbjct: 49  LDRSA 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.96
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.96
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.95
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.95
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.95
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.95
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.95
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.94
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.93
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.92
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.89
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.65
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.59
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.58
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.56
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.53
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.06
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	99.05
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.98
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.95
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.95
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.89
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.88
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.64
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.51
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.07
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.91
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.86
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.84
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.78
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.73
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.71
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.64
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.6
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.55
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.54
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.46
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.43
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.4
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.38
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.36
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.35
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.3
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.23
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.08
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	96.97
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	96.86
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	96.72
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.44
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	95.87
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.76
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	95.68
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	95.52
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	95.49
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	95.19
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	95.12
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	94.74
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	94.47
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	93.84
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	92.57
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	91.35
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	90.16
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	90.13
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	88.51
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	86.6
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	84.25

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.6e-29  Score=185.85  Aligned_cols=109  Identities=34%  Similarity=0.556  Sum_probs=103.2

Q ss_pred             CCcEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEE
Q 024876           51 HEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHV  129 (261)
Q Consensus        51 ~~gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i  129 (261)
                      ++||+|+|+++|+|. .|..||.|+|||++++.+ |++|++|+..+.|+.|.+|.+ .+++||+.+|.+|++||+++|.|
T Consensus        10 d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~d-G~~fdss~~~~~p~~f~~g~~-~~i~G~~~~l~~M~~Ge~~~~~i   87 (120)
T d1q1ca1          10 DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLD-GTKFDSSLDRKDKFSFDLGKG-EVIKAWDIAIATMKVGEVCHITC   87 (120)
T ss_dssp             SSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETT-SCEEEESTTSSSCEEEETTTT-SSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             CCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcC-CCEEEeccccccceeeecCCC-ceeeeeeeeeccccCCcEEEEEE
Confidence            499999999999997 799999999999999987 899999998889999999999 89999999999999999999999


Q ss_pred             eCCCCcCCCCCCCCCCCCCCCceEEEEEEeeccc
Q 024876          130 GWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE  163 (261)
Q Consensus       130 ~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~  163 (261)
                      ||+++||..+.  ++.|||+++|+|+|+|++|+.
T Consensus        88 p~~laYG~~g~--~~~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          88 KPEYAYGSAGS--PPKIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             CGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEEC
T ss_pred             CHHHhCCCcCC--CCCCCcCCcEEEEEEEEEEeC
Confidence            99999999987  578999999999999999863

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=9.5e-29  Score=184.87  Aligned_cols=109  Identities=33%  Similarity=0.514  Sum_probs=102.7

Q ss_pred             eCCcEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEE
Q 024876           50 LHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLH  128 (261)
Q Consensus        50 ~~~gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~  128 (261)
                      .++||+|+|+++|+|. .|..||.|+|||++++.+ |++|++|+..+.|++|.+|.+ .+++||+++|.+|++||+++|+
T Consensus         8 ~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~d-G~v~dss~~~~~p~~f~~g~~-~vi~G~~~~l~~M~~Ge~~~~~   85 (118)
T d1r9ha_           8 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLEN-GTKFDSSRDRGDQFSFNLGRG-NVIKGWDLGVATMTKGEVAEFT   85 (118)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETT-SCEEEEHHHHTSCEEEETTTT-SSCHHHHHHHTTCCBTCEEEEE
T ss_pred             CCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcC-CCEEEEccccceeeeeeccCc-ceeeeeeeeeeeecCCceEEEE
Confidence            3589999999999997 799999999999999987 899999988889999999999 8999999999999999999999


Q ss_pred             EeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876          129 VGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (261)
Q Consensus       129 i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~  162 (261)
                      |||+++||..|.  ++.|||+++|+|+|+|++|.
T Consensus        86 ipp~laYG~~g~--~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          86 IRSDYGYGDAGS--PPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             ECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEE
T ss_pred             ECHHHhCCcCCC--CCccCcCCcEEEEEEEEEEe
Confidence            999999999997  46799999999999999974

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.6e-28  Score=179.94  Aligned_cols=110  Identities=26%  Similarity=0.440  Sum_probs=104.0

Q ss_pred             eEeCCcEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEE
Q 024876           48 EVLHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHAL  126 (261)
Q Consensus        48 ~~~~~gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~  126 (261)
                      +++++||+++++++|+|. .|+.||.|+|||++++.| |++|++++....++.|.+|.+ .+++||+++|.+|++|++++
T Consensus         2 ~~~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~d-G~~~ds~~~~~~~~~~~~~~~-~~i~G~~~~l~~M~~G~~~~   79 (113)
T d1yata_           2 EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLEN-GQKFDSSVDRGSPFQCNIGVG-QVIKGWDVGIPKLSVGEKAR   79 (113)
T ss_dssp             EECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETT-SCEEEESTTTTCCEEEETTSS-SSCHHHHHHGGGCCTTCEEE
T ss_pred             cCccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEec-CcEEeccccCCceEeeeeccC-ceeeehhhhcccccCCCEEE
Confidence            467899999999999998 699999999999999987 899999998889999999999 89999999999999999999


Q ss_pred             EEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeec
Q 024876          127 LHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF  161 (261)
Q Consensus       127 ~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v  161 (261)
                      |.|||++|||..|.  ++.||++++|+|+|+|++|
T Consensus        80 ~~iP~~laYG~~g~--~~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          80 LTIPGPYAYGPRGF--PGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             EEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEE
T ss_pred             EEechHHeecCcCC--CCccCcCCeEEEEEEEEEe
Confidence            99999999999997  4679999999999999987

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.95  E-value=4.2e-29  Score=184.93  Aligned_cols=109  Identities=31%  Similarity=0.534  Sum_probs=84.0

Q ss_pred             eCCcEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEE
Q 024876           50 LHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLH  128 (261)
Q Consensus        50 ~~~gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~  128 (261)
                      +++||+|+|+++|+|. .|..||.|+|||++++.+ |++|++|+..+.|++|.+|.+ .+++||+.+|.+|++||+++|+
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~d-G~~~dss~~~~~p~~f~lg~~-~~i~G~~~~l~~M~~Ge~~~~~   79 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLAN-GKKFDSSHDRNEPFVFSIGKG-QVIKAWDIGVATMKKGEICHLL   79 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC-------------CEEEETTSS-SSCHHHHHSTTTCCTTCCEEEE
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECC-CCEEEEEEecceeeeeecCCC-cEEeeeeeeehhccCCcEEEEE
Confidence            4699999999999998 799999999999999886 899999998889999999999 8999999999999999999999


Q ss_pred             EeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876          129 VGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (261)
Q Consensus       129 i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~  162 (261)
                      |||++|||..|.  ++.|||+++|+|+|+|++|+
T Consensus        80 ip~~layG~~g~--~~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          80 CKPEYAYGATGS--LPKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             C----CCCTTTC--TTTSCTTCCCEEEEEEEEEE
T ss_pred             ECHHHhCCCCCC--CCcCCcCCeEEEEEEEEEEC
Confidence            999999999987  57899999999999999984

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.9e-28  Score=178.02  Aligned_cols=106  Identities=31%  Similarity=0.583  Sum_probs=100.3

Q ss_pred             cEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeC
Q 024876           53 KVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGW  131 (261)
Q Consensus        53 gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~  131 (261)
                      ||+|+++++|+|. .|..||.|+|||++++.+ |++|++++..+.|+.|.+|.+ .+++||+.+|.+|++|++++|+|||
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~d-G~~~d~s~~~~~p~~~~~g~~-~~i~G~~~~l~~M~~Ge~~~~~ip~   78 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLED-GKKFDSSRDRNKPFKFMLGKQ-EVIRGWEEGVAQMSVGQRAKLTISP   78 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETT-SCEEEEHHHHTSCEEEETTSC-CSCHHHHHHHTTCCTTCEEEEEECG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecC-CeEEEeeeccceeeeEeeCcc-hhheeehhhhcCccCCCEEEEEECH
Confidence            7999999999998 689999999999999986 899999988889999999999 8999999999999999999999999


Q ss_pred             CCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876          132 ELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (261)
Q Consensus       132 ~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~  162 (261)
                      +++||..+.  ++.|||+++|+|+|+|++|+
T Consensus        79 ~laYG~~g~--~~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          79 DYAYGATGH--PGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             GGTTTTTCB--TTTBCTTCCEEEEEEEEEEC
T ss_pred             HHhCCCCCC--CCCCCcCCeEEEEEEEEEEC
Confidence            999999987  56799999999999999984

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=7.2e-28  Score=196.84  Aligned_cols=112  Identities=24%  Similarity=0.347  Sum_probs=105.8

Q ss_pred             ceeEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEE
Q 024876           46 EVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHA  125 (261)
Q Consensus        46 ~~~~~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~  125 (261)
                      .+..+++||+|+|+++|+|.+|..||.|+|||++++.+ |++|++|+..+.|++|.+|   .+|+||+++|.+|++|+++
T Consensus        92 ~v~~~~sGl~y~v~~~G~G~~p~~~d~v~v~y~g~l~d-g~~f~~s~~~~~p~~~~~~---~~i~G~~e~l~~m~~G~~~  167 (204)
T d1fd9a_          92 GVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLID-GTVFDSTEKTGKPATFQVS---QVIPGWTEALQLMPAGSTW  167 (204)
T ss_dssp             TEEECTTSCEEEEEECCCSCCCCTTCEEEEEEEEEETT-SCEEEEHHHHCSCEEEEGG---GSCHHHHHHHTTCCTTCEE
T ss_pred             ceEEecCccEEEEeecCCCcccCCCCEEEEEEEEEECC-CCEecccccCCCCceecCC---ccchhHHHHhcCCCCCCEE
Confidence            46788999999999999999999999999999999998 8999999888899999888   6899999999999999999


Q ss_pred             EEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeeccc
Q 024876          126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE  163 (261)
Q Consensus       126 ~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~  163 (261)
                      +|+|||+++||..|.  ++.||||++|+|+|+|++|++
T Consensus       168 ~~~iP~~laYG~~g~--~~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         168 EIYVPSGLAYGPRSV--GGPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             EEEECGGGTTTTCCC--SSSCCTTCCEEEEEEEEEEEC
T ss_pred             EEEEChHHCcCCCCC--CCCcCcCCcEEEEEEEEEEEc
Confidence            999999999999997  577999999999999999976

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.5e-27  Score=194.36  Aligned_cols=110  Identities=26%  Similarity=0.519  Sum_probs=104.5

Q ss_pred             ceeEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEE
Q 024876           46 EVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHA  125 (261)
Q Consensus        46 ~~~~~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~  125 (261)
                      .+..+++|++|+|+++|+|..|..||.|+|||++++.+ |++|++|+..+.|+.|.+|   .+|+||+++|.+|++|+++
T Consensus       101 ~v~~~~sGl~y~v~~~G~G~~p~~gd~v~v~y~g~l~d-G~~fd~s~~~~~p~~~~~~---~vi~g~~e~l~~m~~G~k~  176 (210)
T d1q6ha_         101 GVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLID-GKEFDNSYTRGEPLSFRLD---GVIPGWTEGLKNIKKGGKI  176 (210)
T ss_dssp             TEEECTTSCEEEEEECCSSCCCCTTCEEEEEEEEEETT-SCEEEEGGGGTSCEEEEGG---GSCHHHHHHGGGSCTTCEE
T ss_pred             ceEEccCceEEEEeeCCCCCCCCCCceEEEEEEEEEcC-CCEEeecccCCCcceeccC---ccchhHHHHHhhccCCCEE
Confidence            46789999999999999999999999999999999987 8999999998999999997   6899999999999999999


Q ss_pred             EEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876          126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (261)
Q Consensus       126 ~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~  162 (261)
                      +|+|||+++||..|.   +.||||++|+|+|+|++|+
T Consensus       177 ~~~iP~~laYG~~g~---~~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         177 KLVIPPELAYGKAGV---PGIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             EEEECGGGTTTTTCB---TTBCTTCCEEEEEEEEEEC
T ss_pred             EEEECHHHCcCCCCC---CCCCcCCcEEEEEEEEEEC
Confidence            999999999999996   6799999999999999984

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.94  E-value=6.9e-27  Score=183.61  Aligned_cols=115  Identities=22%  Similarity=0.399  Sum_probs=103.0

Q ss_pred             ceeEeCCcEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcE
Q 024876           46 EVEVLHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEH  124 (261)
Q Consensus        46 ~~~~~~~gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~  124 (261)
                      .+..+++||+|+|+++|.|. .|..||.|+|||++++.+ |++|++++....|+.+  +.+ .+|+||+.+|.+|++|++
T Consensus        28 ~~~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~d-G~~fds~~~~~~p~~~--~~~-~~i~G~~e~l~~M~~Ge~  103 (160)
T d1jvwa_          28 DAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRD-GTVFDSSRERGKPTTF--RPN-EVIKGWTEALQLMREGDR  103 (160)
T ss_dssp             TEEECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTT-SCEEEEHHHHTSCEEE--CGG-GSCHHHHHHHTTCCTTCE
T ss_pred             CCEECCCCCEEEEEECcccccCCCCCcceEEEEEEEEcc-CCeeeeeccccCcccc--Ccc-ccchhHHHHhcCccccce
Confidence            46788999999999999998 799999999999999887 8999998776666555  555 799999999999999999


Q ss_pred             EEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecccCcc
Q 024876          125 ALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE  166 (261)
Q Consensus       125 ~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~~~~  166 (261)
                      ++|+|||+++||..|.  ++.|||+++|+|+|+|++|++...
T Consensus       104 ~~v~iPp~laYG~~g~--~~~IPp~s~LifeIeLl~i~~~~~  143 (160)
T d1jvwa_         104 WRLFIPYDLAYGVTGG--GGMIPPYSPLEFDVELISIKDGGK  143 (160)
T ss_dssp             EEEEECGGGTTTTTCS--SSSSCTTCCEEEEEEEEEEGGGCC
T ss_pred             eEEEeCHHHCcCCCCC--CCCcCcCCcEEEEEEEEEEecCCC
Confidence            9999999999999986  467999999999999999986653

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.3e-26  Score=171.40  Aligned_cols=107  Identities=30%  Similarity=0.446  Sum_probs=97.4

Q ss_pred             cEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcC-------CCcCcEEecCCccchhHHHHHHhhcCCCCcE
Q 024876           53 KVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWL-------EQQPLEMVLGKEKKEMTGLAIGVSSMKAGEH  124 (261)
Q Consensus        53 gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~-------~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~  124 (261)
                      .+.|+|+++|+|. .|+.||.|+|||++++.| |++||+|+.       ...|+.|.+|.+ .+++||+++|.+|++||+
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~d-G~~fdss~~~~~~~~~~~~p~~f~lg~~-~~i~Gl~~~v~~M~~Ge~   79 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQD-GTVFDTNIQTSAKKKKNAKPLSFKVGVG-KVIRGWDEALLTMSKGEK   79 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTT-SCEEEECCCSSCCTTTSSCCEEEETTTT-SSCHHHHHHHTTCCTTCE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECC-CCEeecccccccccccCCCceeeeeccc-ccccchheechhhcCCcE
Confidence            4789999999997 799999999999999987 899999864       346999999999 899999999999999999


Q ss_pred             EEEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024876          125 ALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD  162 (261)
Q Consensus       125 ~~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~  162 (261)
                      ++|+|||+++||..+.. ...|||+++|+|+|+|++|+
T Consensus        80 ~~~~ip~~~ayG~~g~~-~~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          80 ARLEIEPEWAYGKKGQP-DAKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             EEEEECGGGTTTTTCBG-GGTBCTTCCEEEEEEEEEEC
T ss_pred             EEEEECHHHhCCccCCC-CCCcCcCCeEEEEEEEEEEC
Confidence            99999999999998863 14699999999999999984

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=2.9e-26  Score=173.21  Aligned_cols=113  Identities=23%  Similarity=0.309  Sum_probs=102.8

Q ss_pred             eeEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhh------cCC
Q 024876           47 VEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVS------SMK  120 (261)
Q Consensus        47 ~~~~~~gi~k~vl~~G~G~~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~------~Mk  120 (261)
                      ..++++||+|+++++|+|..|..||.|+|||++++.+ |++|++|+..+.|+.|.+|.+ .++++|+.++.      .|+
T Consensus         3 ~~~~psGl~y~~~~~G~G~~p~~gd~V~v~y~g~l~~-G~~fdss~~~~~p~~~~~g~~-~~i~g~~~~i~g~~~l~~M~   80 (125)
T d1u79a_           3 FSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLEN-GKVFDSSYNRGKPLTFRIGVG-EVIKGWDQGILGSDGIPPML   80 (125)
T ss_dssp             CEECTTSCEEEEEECCSSCBCCTTCEEEEEEEEECTT-SCEEEEHHHHTSCEEEETTSS-SSCHHHHHHHHCBTTBCCCB
T ss_pred             cEECCCCCEEEEEEeccCCCCCCCCEEEEEEEeeecC-CcEEecccccCcceeEecCcc-ccccchhhhccchhhccccc
Confidence            5688999999999999999999999999999999887 899999988888999999999 89999999875      499


Q ss_pred             CCcEEEEEEeCCCCcCCCCCC---CCCCCCCCCceEEEEEEeec
Q 024876          121 AGEHALLHVGWELGYGKEGSF---SFPNVSPMADLVYEVVLIGF  161 (261)
Q Consensus       121 ~Ge~~~~~i~~~~~yg~~g~~---~~~~ip~~~~l~~~iel~~v  161 (261)
                      +|++++|+|||+++||+.|..   ..+.|||+++|+|+|+|+.+
T Consensus        81 ~G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          81 TGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             TTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            999999999999999998741   13459999999999999976

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.92  E-value=1.6e-24  Score=161.17  Aligned_cols=108  Identities=22%  Similarity=0.447  Sum_probs=93.6

Q ss_pred             EeCCcEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCc--cchhHHHHHHhhcCCCCcEE
Q 024876           49 VLHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKE--KKEMTGLAIGVSSMKAGEHA  125 (261)
Q Consensus        49 ~~~~gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~--~~~i~gle~~l~~Mk~Ge~~  125 (261)
                      +.++||.|+|+++|+|. .|..||.|+|||++++ + |++|+++     ++.|.++.+  ..+|+||+.+|.+|++||++
T Consensus         5 ~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~-g~~~~~~-----~~~~~~~~~~~~~vi~G~~~~l~~M~~Ge~~   77 (115)
T d1kt1a3           5 LEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-G-GRVFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQREEQC   77 (115)
T ss_dssp             TSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-T-TEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEE
T ss_pred             ccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-C-Ccccccc-----ccCceeeeccccccCchhHhhhccchhhcee
Confidence            35799999999999996 8999999999999997 3 6888765     566777653  15899999999999999999


Q ss_pred             EEEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecccC
Q 024876          126 LLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET  164 (261)
Q Consensus       126 ~~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~~  164 (261)
                      +|+|||+++||..|.. +..|||+++|+|+|+|++|++.
T Consensus        78 ~v~ip~~~ayG~~g~~-~~~Ipp~a~l~f~ieLl~~~ka  115 (115)
T d1kt1a3          78 ILHLGPRYGFGEAGKP-KFGIEPNAELIYEVTLKSFEKA  115 (115)
T ss_dssp             EEEECGGGSSCTTCBT-TTTBCTTCCEEEEEEEEEEECC
T ss_pred             EEEeCHHHCcCCCCCC-CCCcCcCCeEEEEEEEEEEEeC
Confidence            9999999999999873 2369999999999999999863

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.5e-23  Score=155.05  Aligned_cols=108  Identities=23%  Similarity=0.401  Sum_probs=91.7

Q ss_pred             eCCcEEEEEEecCCCC-CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCc--cchhHHHHHHhhcCCCCcEEE
Q 024876           50 LHEKVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKE--KKEMTGLAIGVSSMKAGEHAL  126 (261)
Q Consensus        50 ~~~gi~k~vl~~G~G~-~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~--~~~i~gle~~l~~Mk~Ge~~~  126 (261)
                      .++||.|+|+++|.|. +|..||.|+|||++++.+ | .|+++     +..|..+.+  ..+++||+.+|.+|++|++++
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~-~-~~~~~-----~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~~   78 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKD-K-LFDQR-----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSI   78 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETT-E-EEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCC-C-cEeec-----cccceeeecceeeeCcHHHHhhhcchhhCeEE
Confidence            3599999999999997 899999999999999865 4 45544     345555542  158999999999999999999


Q ss_pred             EEEeCCCCcCCCCCCCCCCCCCCCceEEEEEEeecccCc
Q 024876          127 LHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETK  165 (261)
Q Consensus       127 ~~i~~~~~yg~~g~~~~~~ip~~~~l~~~iel~~v~~~~  165 (261)
                      |+|||++|||..|.. +..|||+++|+|+|+|++|.+.+
T Consensus        79 i~ip~~~ayG~~g~~-~~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          79 VYLKPSYAFGSVGKE-KFQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             EEECGGGTTTTTCBG-GGTBCTTCCEEEEEEEEEEECCC
T ss_pred             EEECHHHhCcccCCC-CCccCcCCeEEEEEEEEEEEeCC
Confidence            999999999998863 23799999999999999998765

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.65  E-value=5.4e-17  Score=125.31  Aligned_cols=71  Identities=27%  Similarity=0.386  Sum_probs=65.0

Q ss_pred             CCCCCEEEEEEEEEEeCCCeEEecCcC-------------CCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCC
Q 024876           67 PSKYSTCFLHYRAWAESTRHKFDDTWL-------------EQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWEL  133 (261)
Q Consensus        67 p~~g~~V~v~y~~~~~~~g~~~~st~~-------------~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~  133 (261)
                      ++.|+.|++||++++.+ |++|+||+.             .+.|++|++|.+ .+++||+.+|.+|++|+++.|.|||+.
T Consensus         2 v~~G~~V~v~Y~~~~~~-G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g-~~ipglE~al~gm~~Ge~~~v~i~p~~   79 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLES-GDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEG-QLIQGFEEAVLDMEVGDEKTVKIPAEK   79 (151)
T ss_dssp             CCTTCEEEECCEECCTT-SCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTT-CSCHHHHHHHHTCCTTCCCEEEECTTT
T ss_pred             ccCCCEEEEEEEEEECC-CCEEEeCchHhcccccccccccCCCCEEEEecCC-CccHHHHHHHHhhcCCceeEEEeCHHH
Confidence            57899999999999976 899999863             346999999999 899999999999999999999999999


Q ss_pred             CcCCCC
Q 024876          134 GYGKEG  139 (261)
Q Consensus       134 ~yg~~g  139 (261)
                      +||...
T Consensus        80 ayG~~d   85 (151)
T d1ix5a_          80 AYGNRN   85 (151)
T ss_dssp             SSCSCC
T ss_pred             hccccc
Confidence            999764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.59  E-value=1.8e-15  Score=118.46  Aligned_cols=91  Identities=25%  Similarity=0.391  Sum_probs=81.7

Q ss_pred             ccCCCchhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhC
Q 024876          169 ARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR  248 (261)
Q Consensus       169 e~~~l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~  248 (261)
                      +.|.|+.+|++..+..+++.||.+|+.|+|..|+..|++||.+++...  ....+.......+...+|+|+|.||+++++
T Consensus         2 e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~   79 (168)
T d1kt1a1           2 ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEY--GLSEKESKASESFLLAAFLNLAMCYLKLRE   79 (168)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC--SCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh--ccchhhhhhcchhHHHHHHhHHHHHHHhhh
Confidence            589999999999999999999999999999999999999999987543  233455667888899999999999999999


Q ss_pred             HHHHHHHHHhhcC
Q 024876          249 YEEAIGQCSLVSK  261 (261)
Q Consensus       249 ~~~ai~~c~~aL~  261 (261)
                      |.+|+.+|++||+
T Consensus        80 ~~~Ai~~~~~al~   92 (168)
T d1kt1a1          80 YTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhh
Confidence            9999999999973

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.58  E-value=2.1e-15  Score=116.47  Aligned_cols=92  Identities=30%  Similarity=0.404  Sum_probs=80.3

Q ss_pred             ccCCCchhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhC
Q 024876          169 ARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR  248 (261)
Q Consensus       169 e~~~l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~  248 (261)
                      +.|+|+.++++..+..+++.||.+|+.|+|..|+..|++|+.++...... ...........+.+.+|+|+|.||+++++
T Consensus         4 ~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~~Nla~~~~~l~~   82 (153)
T d2fbna1           4 SIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW-DDQILLDKKKNIEISCNLNLATCYNKNKD   82 (153)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC-CCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             chhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh-hhHHHHHhhhhHHHHHHhhHHHHHHHhcc
Confidence            48999999999999999999999999999999999999999988754322 22334556677888999999999999999


Q ss_pred             HHHHHHHHHhhcC
Q 024876          249 YEEAIGQCSLVSK  261 (261)
Q Consensus       249 ~~~ai~~c~~aL~  261 (261)
                      |.+|+.+|.+||+
T Consensus        83 ~~~Al~~~~~al~   95 (153)
T d2fbna1          83 YPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cchhhhhhhcccc
Confidence            9999999999973

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.56  E-value=4.7e-15  Score=103.21  Aligned_cols=85  Identities=18%  Similarity=0.312  Sum_probs=75.5

Q ss_pred             CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCCCC
Q 024876           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN  145 (261)
Q Consensus        66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~~~  145 (261)
                      ++..||.|+|+|+++. + |+.|+++.  ...+.|++|.+ .++|||+.+|.+|++|++..|.+++...|+....     
T Consensus         1 k~a~GD~V~idy~g~~-d-G~~~~~~~--~~~~~~~lg~~-~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~l-----   70 (85)
T d1hxva_           1 KLANGDIAIIDFTGIV-D-NKKLASAS--AQNYELTIGSN-SFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL-----   70 (85)
T ss_dssp             CCCSSEEEEEEEEEEE-T-TEECSTTC--CSEEEEEETSS-CSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG-----
T ss_pred             CCCCCCEEEEEEEEEE-C-CEEccccc--ccCCCEEECCc-ccCchHHHHhccCcCCCeEEEEEEChhhcCcccC-----
Confidence            4788999999999997 4 89999864  45788999999 8999999999999999999999999999987653     


Q ss_pred             CCCCCceEEEEEEeecc
Q 024876          146 VSPMADLVYEVVLIGFD  162 (261)
Q Consensus       146 ip~~~~l~~~iel~~v~  162 (261)
                        +|.++.|+|+|++|+
T Consensus        71 --aGk~~~f~V~v~~Vk   85 (85)
T d1hxva_          71 --QSKPVTFEVVLKAIK   85 (85)
T ss_dssp             --GSCCCEEEEEECCBC
T ss_pred             --CCCcEEEEEEEEEeC
Confidence              688999999999874

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1e-14  Score=114.43  Aligned_cols=90  Identities=28%  Similarity=0.447  Sum_probs=80.9

Q ss_pred             cCCCchhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCH
Q 024876          170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY  249 (261)
Q Consensus       170 ~~~l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~  249 (261)
                      .|+|+.+++++.+..++++||.+|++|+|..|+..|++||.++.....  ........+..++..+|+|+|.||+++++|
T Consensus         1 ~~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~nla~~y~k~~~~   78 (170)
T d1p5qa1           1 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--FSNEEAQKAQALRLASHLNLAMCHLKLQAF   78 (170)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--CCSHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--cchHHHhhhchhHHHHHHHHHHHHHhhhhc
Confidence            599999999999999999999999999999999999999999875432  234566778889999999999999999999


Q ss_pred             HHHHHHHHhhcC
Q 024876          250 EEAIGQCSLVSK  261 (261)
Q Consensus       250 ~~ai~~c~~aL~  261 (261)
                      .+|+.+|++||+
T Consensus        79 ~~A~~~~~~al~   90 (170)
T d1p5qa1          79 SAAIESCNKALE   90 (170)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             ccccchhhhhhh
Confidence            999999999973

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.06  E-value=1.1e-10  Score=90.48  Aligned_cols=88  Identities=23%  Similarity=0.348  Sum_probs=72.1

Q ss_pred             CchhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHH
Q 024876          173 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEA  252 (261)
Q Consensus       173 l~~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~a  252 (261)
                      .+.+..+..+..++..||.+|+.|+|..|+..|++||.++...... ........+..+...+++|+|.|++++++|.+|
T Consensus        18 ~~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A   96 (169)
T d1ihga1          18 KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAA-AEDADGAKLQPVALSCVLNIGACKLKMSDWQGA   96 (169)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH-SCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh-hhhHHHHHhChhhHHHHHHHHHHHHhhcccchh
Confidence            3567778889999999999999999999999999999987643211 112223345677888999999999999999999


Q ss_pred             HHHHHhhcC
Q 024876          253 IGQCSLVSK  261 (261)
Q Consensus       253 i~~c~~aL~  261 (261)
                      +.+|++||+
T Consensus        97 i~~~~~al~  105 (169)
T d1ihga1          97 VDSCLEALE  105 (169)
T ss_dssp             HHHHHHHHT
T ss_pred             hhhhhhhhh
Confidence            999999985

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=1.7e-10  Score=82.94  Aligned_cols=88  Identities=15%  Similarity=0.270  Sum_probs=73.2

Q ss_pred             CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCCCC
Q 024876           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN  145 (261)
Q Consensus        66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~~~  145 (261)
                      .+..||.|+|+|+++. + |+.+.+.  ....+.|.+|.+ .+++||+.+|.+|++|+...|.+.....|....      
T Consensus        14 ~a~~GD~v~id~~~~~-d-G~~~~~~--~~~~~~~~lg~~-~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~~------   82 (106)
T d1l1pa_          14 AVEAEDRVTIDFTGSV-D-GEEFEGG--KASDFVLAMGQG-RMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAEN------   82 (106)
T ss_dssp             SCCTTEEEEEEEECCS-S-SSCCSTT--EEEEEEEEETTS-CCCTTHHHHTTSCCTTCCEEEEECCCSSCCCTT------
T ss_pred             cccCCCEEEEEEEEEE-C-CEECCCC--cccceEEEecCC-CccchHHHHhcCCCCCceEEEEEEeCCCCCchh------
Confidence            5678999999999975 3 7777654  234689999999 899999999999999999999998777775433      


Q ss_pred             CCCCCceEEEEEEeecccCc
Q 024876          146 VSPMADLVYEVVLIGFDETK  165 (261)
Q Consensus       146 ip~~~~l~~~iel~~v~~~~  165 (261)
                       -+|.++.|.|+|++|....
T Consensus        83 -laGK~v~f~V~v~~i~~~~  101 (106)
T d1l1pa_          83 -LKGKAAKFAINLKKVEERE  101 (106)
T ss_dssp             -TTTCCEEEEEEEEEEECCC
T ss_pred             -hCCCEEEEEEEEEEecccc
Confidence             3688999999999998765

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.5e-10  Score=84.61  Aligned_cols=65  Identities=20%  Similarity=0.266  Sum_probs=57.5

Q ss_pred             hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      +.|.+.|+.||.+|+.|+|..|+.+|+++|.+...                 ...+++|+|.||+++++|.+|+.+|.+|
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a   64 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-----------------NMTYITNQAAVYFEKGDYNKCRELCEKA   64 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----------------cHHHHHhHHHHHHHcCchHHHHHHHHHH
Confidence            35778899999999999999999999999987432                 1369999999999999999999999998


Q ss_pred             cC
Q 024876          260 SK  261 (261)
Q Consensus       260 L~  261 (261)
                      |+
T Consensus        65 l~   66 (128)
T d1elra_          65 IE   66 (128)
T ss_dssp             HH
T ss_pred             HH
Confidence            73

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.95  E-value=1.4e-10  Score=84.33  Aligned_cols=88  Identities=9%  Similarity=0.192  Sum_probs=73.6

Q ss_pred             CCCCCCEEEEEEEEEEeCCCeEEecCcCCCcCcEEecCCccchhHHHHHHhhcCCCCcEEEEEEeCCCCcCCCCCCCCCC
Q 024876           66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN  145 (261)
Q Consensus        66 ~p~~g~~V~v~y~~~~~~~g~~~~st~~~~~~~~~~lG~~~~~i~gle~~l~~Mk~Ge~~~~~i~~~~~yg~~g~~~~~~  145 (261)
                      .+..||.|+|+|+++.  +|+.+...  ....+.|.+|.+ .++++|+.+|.+|++|+...|.+.....|.....     
T Consensus        23 ~a~~gD~v~id~~~~~--dG~~~~~~--~~~~~~~~lg~~-~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~l-----   92 (113)
T d1t11a3          23 AAENGKRVSIDFVGSI--DGVEFEGG--KAENFPLEMGAG-RMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL-----   92 (113)
T ss_dssp             CCCTTCEEEEEEEEES--SSSCCTTC--EEEEEEEETTSC-CBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT-----
T ss_pred             cccCCCEEEEEEEEEE--CCEEccCC--ccceEEEEeccc-cccccHHHhhcCCcCCCEEEEEEeCCCcCCcccc-----
Confidence            4789999999999986  37777654  335789999999 8999999999999999999999987777765432     


Q ss_pred             CCCCCceEEEEEEeecccCc
Q 024876          146 VSPMADLVYEVVLIGFDETK  165 (261)
Q Consensus       146 ip~~~~l~~~iel~~v~~~~  165 (261)
                        +|.++.|.|+|++|+...
T Consensus        93 --aGk~~~f~v~v~~Ik~~~  110 (113)
T d1t11a3          93 --KGKAAKFAIKVNKVEARE  110 (113)
T ss_dssp             --SSCEEEECCCEEEEEEEE
T ss_pred             --CCCeEEEEEEEEEEEecc
Confidence              688999999999997653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=4.5e-10  Score=88.23  Aligned_cols=63  Identities=32%  Similarity=0.358  Sum_probs=55.3

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      +..+|+.||.+|+.|+|..|+..|++||.+-..                 ...+|+|+|.||+++|+|++|+.+|.+||+
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-----------------~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~   66 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-----------------VAVYYTNRALCYLKMQQPEQALADCRRALE   66 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CHHHHHhHHHHHhhhhhhhhhhHHHHHHHH
Confidence            567899999999999999999999999987432                 146899999999999999999999999874

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=9.9e-10  Score=84.01  Aligned_cols=69  Identities=22%  Similarity=0.274  Sum_probs=57.7

Q ss_pred             hhhHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHH
Q 024876          175 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG  254 (261)
Q Consensus       175 ~ee~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~  254 (261)
                      .+.-++.+..++.+||.+|+.|+|..|+..|++|+.+-..                 ...+|+|++.|++++|+|.+|+.
T Consensus         3 ~~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~-----------------~~~~~~~lg~~~~~~~~~~~A~~   65 (159)
T d1a17a_           3 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-----------------NAIYYGNRSLAYLRTECYGYALG   65 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchh-----------------hhhhhhhhHHHHHhccccchHHH
Confidence            3556789999999999999999999999999999987432                 13577888888888888888888


Q ss_pred             HHHhhc
Q 024876          255 QCSLVS  260 (261)
Q Consensus       255 ~c~~aL  260 (261)
                      .+.+||
T Consensus        66 ~~~kal   71 (159)
T d1a17a_          66 DATRAI   71 (159)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888776

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=9.9e-10  Score=79.94  Aligned_cols=63  Identities=21%  Similarity=0.216  Sum_probs=49.1

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+..++++||.+|+.|+|.+|+..|.++|..-..+                 ..+++|+|.||+++++|.+|+..|.++|
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~-----------------~~~~~~~a~~~~~~~~~~~A~~~~~~al   64 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-----------------HVLYSNRSAAYAKKGDYQKAYEDGCKTV   64 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-----------------hhhhhcccccccccccccccchhhhhHH
Confidence            45678999999999999999999999999874432                 2467777777777777777777776665

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.64  E-value=3.6e-08  Score=74.91  Aligned_cols=77  Identities=17%  Similarity=0.155  Sum_probs=60.4

Q ss_pred             hhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHh
Q 024876          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  258 (261)
Q Consensus       179 ~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~  258 (261)
                      +..+......|+.+|..|+|..|+..|++||.+..........     ........+|+|++.||.++|+|++|+.+|++
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~-----~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~   80 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAF-----DHAGFDAFCHAGLAEALAGLRSFDEALHSADK   80 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCC-----CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhc-----ccchhHHHHHHHHHHHHHHcCccchhhHhhhh
Confidence            4556667778999999999999999999999987653211100     11233467999999999999999999999999


Q ss_pred             hc
Q 024876          259 VS  260 (261)
Q Consensus       259 aL  260 (261)
                      +|
T Consensus        81 al   82 (156)
T d2hr2a1          81 AL   82 (156)
T ss_dssp             HH
T ss_pred             hh
Confidence            87

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=6.5e-08  Score=67.41  Aligned_cols=68  Identities=9%  Similarity=-0.002  Sum_probs=55.9

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ..-+.|+.+|+.|+|..|+..|++|++.........          .-+..+|.|++.|+.++|+|++|+....+||+
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~----------~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEIST----------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS----------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC----------ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            345789999999999999999999999875431111          12347899999999999999999999999874

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=3e-06  Score=66.24  Aligned_cols=59  Identities=12%  Similarity=0.021  Sum_probs=52.1

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ....|+.+++.|+|..|+..|++||++-..                 ...+|+|++.|+.++++|.+|+.+|.+||
T Consensus        39 ~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-----------------~~~a~~~~g~~~~~~g~~~~A~~~~~kAl   97 (192)
T d1hh8a_          39 CFNIGCMYTILKNMTEAEKAFTRSINRDKH-----------------LAVAYFQRGMLYYQTEKYDLAIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchhHHHHHHHHHHHhhh-----------------hhhhHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            457899999999999999999999986322                 24699999999999999999999999986

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.2e-05  Score=57.44  Aligned_cols=61  Identities=21%  Similarity=0.049  Sum_probs=53.0

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .....|+.+++.|+|..|+..|.+++.+-...                 ...|.|++.|+.++++|++|+....++|+
T Consensus        39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~~~g~~~~~~~~~~~A~~~~~~a~~   99 (117)
T d1elwa_          39 LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-----------------GKGYSRKAAALEFLNRFEEAKRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hhhcccccccccccccccchhhhhHHHhccch-----------------hhHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            45667999999999999999999999874321                 35899999999999999999999999874

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.86  E-value=2.2e-05  Score=60.60  Aligned_cols=82  Identities=15%  Similarity=0.133  Sum_probs=67.9

Q ss_pred             hhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhcccccc-----ccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHH
Q 024876          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-----QLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  253 (261)
Q Consensus       179 ~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~-----~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai  253 (261)
                      +.....+...|+.++..|++..|+..|.+|+.+.......     .........+....+.++.|++.+++++|+|.+|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            4456677889999999999999999999999986433211     12235677888999999999999999999999999


Q ss_pred             HHHHhhc
Q 024876          254 GQCSLVS  260 (261)
Q Consensus       254 ~~c~~aL  260 (261)
                      ..|.++|
T Consensus        88 ~~~~~al   94 (179)
T d2ff4a2          88 AELEALT   94 (179)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999986

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.84  E-value=2e-05  Score=55.75  Aligned_cols=63  Identities=13%  Similarity=0.051  Sum_probs=39.2

Q ss_pred             hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      ......-..|..++++|+|..|+..|++++..-...                 ..++.+++.|+.++++|.+|+....+|
T Consensus        14 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~a~~~lg~~~~~~~~~~~A~~~~~~a   76 (112)
T d1hxia_          14 MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPER-----------------EEAWRSLGLTQAENEKDGLAIIALNHA   76 (112)
T ss_dssp             GGCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHhhhccccccc-----------------chhhhhhhhhhhhhhhHHHhhcccccc
Confidence            334445567888999999999999999998764321                 234444445555555555444444444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=1.3e-05  Score=64.01  Aligned_cols=63  Identities=14%  Similarity=0.000  Sum_probs=47.5

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+..+...|..+++.|+|..|+..|++||.+-...                 ..+++|+|.|++++|+|++|+..+.+||
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~-----------------~~a~~~lg~~~~~~g~~~~A~~~~~~al   98 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-----------------PEVFNYLGIYLTQAGNFDAAYEAFDSVL   98 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC-----------------HHHHhhhchHHHHHHHHHHhhhhhhHHH
Confidence            34556788999999999999999999999864321                 2456677777777777777777776665

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.73  E-value=2.2e-05  Score=58.86  Aligned_cols=74  Identities=19%  Similarity=0.069  Sum_probs=57.3

Q ss_pred             hcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          182 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       182 a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      +..+...|..+++.|+|..|+..|.+++.+.........  .    .......+|+|++.||.++|+|++|+.+..+||+
T Consensus        55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~--~----~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ--D----EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS--T----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc--c----ccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667899999999999999999999998753211111  1    1223346799999999999999999999999873

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=1.9e-05  Score=60.79  Aligned_cols=60  Identities=20%  Similarity=0.314  Sum_probs=51.7

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      -+-..|..+++.|+|..|+..|++|+.+-..                 ...+|.|+|.||+++++|++|+....+||
T Consensus        40 ~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-----------------~~~a~~~lg~~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          40 YYTNRALCYLKMQQPEQALADCRRALELDGQ-----------------SVKAHFFLGQCQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4556799999999999999999999976332                 13579999999999999999999999886

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.64  E-value=3.8e-05  Score=57.38  Aligned_cols=60  Identities=8%  Similarity=-0.009  Sum_probs=52.0

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..-..|.-+++.++|..|+..|.+||.+-..                 ...+|.|+|.|+.++|+|++|+.++.+||
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-----------------~~ka~~~~g~~~~~lg~~~~A~~~~~~al  128 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-----------------NVKALYKLGVANMYFGFLEEAKENLYKAA  128 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccch-----------------hhhhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence            3456888999999999999999999986322                 13689999999999999999999999987

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=1.5e-05  Score=62.19  Aligned_cols=61  Identities=13%  Similarity=0.073  Sum_probs=50.0

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .+.++..+|..++.+|+|..|+..|.++.   +.                 ...+++|++.||+++|+|++|+.++++||
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i~---~~-----------------~~~~~~nlG~~~~~~g~~~~A~~~~~kAl   63 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAVQ---DP-----------------HSRICFNIGCMYTILKNMTEAEKAFTRSI   63 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS---SC-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhcC---CC-----------------CHHHHHHHHHHHHHcCCchhHHHHHHHHH
Confidence            44567789999999999999999997632   11                 01368899999999999999999999997


Q ss_pred             C
Q 024876          261 K  261 (261)
Q Consensus       261 ~  261 (261)
                      +
T Consensus        64 ~   64 (192)
T d1hh8a_          64 N   64 (192)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.55  E-value=5.3e-05  Score=57.30  Aligned_cols=61  Identities=15%  Similarity=0.089  Sum_probs=51.5

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .+...|..+++.|+|..|+..|.+||.+-..                 ...+|+|+|.|++++++|++|+.+..+||+
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-----------------~~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-----------------NTKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhhhhh-----------------hhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            3445688899999999999999999986321                 136799999999999999999999999873

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00013  Score=52.39  Aligned_cols=76  Identities=16%  Similarity=0.061  Sum_probs=51.9

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhccccc---------c--ccchhHHHH---HHH--------hhhhhhhHHHHHH
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM---------F--QLFGKYRDM---ALA--------VKNPCHLNMAACL  243 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~---------~--~~~~~~~~~---~~~--------l~~~~~~N~A~c~  243 (261)
                      -+..|.++..++|.+|.+.|++++.+-.....         .  ...++..+.   ++.        ....++.|+|.||
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            35678888899999999999999886433210         0  011111111   121        2234789999999


Q ss_pred             HHhhCHHHHHHHHHhhcC
Q 024876          244 LKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       244 lKl~~~~~ai~~c~~aL~  261 (261)
                      .++|+|.+|+.++.++|+
T Consensus        83 ~~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHH
Confidence            999999999999999873

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.46  E-value=0.00012  Score=55.43  Aligned_cols=59  Identities=14%  Similarity=0.091  Sum_probs=51.5

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .-..|..+++.++|..|+..|.+++.+-..                 ...++.|+|.|+..+|+|.+|+.++.+||
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-----------------~~~a~~~~~~~~~~l~~~~~A~~~~~~al  125 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLDSA-----------------NEKGLYRRGEAQLLMNEFESAKGDFEKVL  125 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhhcccc-----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            445788899999999999999999986322                 24689999999999999999999999987

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.43  E-value=0.00011  Score=51.69  Aligned_cols=61  Identities=13%  Similarity=-0.010  Sum_probs=52.3

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ......|.-+++.+++..|+..|++|+.+-..                 ...++.|+|.||.++|++.+|+...++.|
T Consensus        51 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----------------~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          51 EAWRSLGLTQAENEKDGLAIIALNHARMLDPK-----------------DIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhHHHhhcccccccccccc-----------------cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            34566799999999999999999999987432                 13688999999999999999999988876

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00012  Score=55.52  Aligned_cols=60  Identities=12%  Similarity=0.068  Sum_probs=51.7

Q ss_pred             cchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          185 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       185 ~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .-..|..+++.|+|..|+..|.+||.+-..                 ...++.++|.|+.++|+|.+|+.++.+||+
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~-----------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELDSN-----------------NEKGLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhcccc-----------------chhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            445788899999999999999999987322                 246899999999999999999999999863

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00011  Score=60.76  Aligned_cols=58  Identities=10%  Similarity=0.078  Sum_probs=38.2

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      -+.|+.+|+.|+|..|+..|+++++.....                 ..++.++|.|++++|+|++|+..+.+||
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~-----------------~~~~~~la~~~~~~~~~~~A~~~~~~al   60 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPDN-----------------TGVLLLLSSIHFQCRRLDRSAHFSTLAI   60 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            367899999999999999999999764321                 1244455555555555555555555443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00018  Score=53.56  Aligned_cols=60  Identities=17%  Similarity=0.050  Sum_probs=51.8

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .....|..+++.|++..|+..|.+|+.+-..                 ...++.|+|.|++.+|+|++|+..+.+++
T Consensus        46 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-----------------~~~a~~~~g~~~~~~g~~~eA~~~~~~a~  105 (159)
T d1a17a_          46 YYGNRSLAYLRTECYGYALGDATRAIELDKK-----------------YIKGYYRRAASNMALGKFRAALRDYETVV  105 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHhccccchHHHHHHHHHHHccc-----------------chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3456799999999999999999999987432                 13678999999999999999999999886

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=0.0001  Score=60.62  Aligned_cols=70  Identities=13%  Similarity=-0.017  Sum_probs=56.1

Q ss_pred             hhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          180 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       180 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      +.+......||.+...++|.+|+..|.+|+.+......           ......+|.|++.||.++++|++|+....++
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~-----------~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a  103 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN-----------EDEAGNTYVEAYKCFKSGGNSVNAVDSLENA  103 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC-----------CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHh
Confidence            33556777888888999999999999999987543210           1223679999999999999999999999988


Q ss_pred             c
Q 024876          260 S  260 (261)
Q Consensus       260 L  260 (261)
                      +
T Consensus       104 ~  104 (290)
T d1qqea_         104 I  104 (290)
T ss_dssp             H
T ss_pred             h
Confidence            6

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00015  Score=59.66  Aligned_cols=58  Identities=14%  Similarity=0.036  Sum_probs=41.3

Q ss_pred             chhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          186 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       186 K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      -++|..+|+.|+|..|+..|+++++.-...                 ..++.++|.|+.++++|++|+..+.+||
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-----------------~~a~~~lg~~~~~~~~~~~A~~~~~~al   80 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-----------------MEAWQYLGTTQAENEQELLAISALRRCL   80 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCChHHHHHHHHhhh
Confidence            467999999999999999999999864321                 2355556666666666666666655554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00022  Score=51.33  Aligned_cols=68  Identities=12%  Similarity=0.089  Sum_probs=55.1

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..+...|+.+++.|+|..|+..|.+|+.+-....          ........+|.+++.++..+++|++|+....++|
T Consensus        39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~----------~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal  106 (128)
T d1elra_          39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR----------EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL  106 (128)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST----------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH----------HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4566789999999999999999999998743321          1123445789999999999999999999988875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00035  Score=57.25  Aligned_cols=28  Identities=14%  Similarity=0.095  Sum_probs=23.4

Q ss_pred             hhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          233 NPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       233 ~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..++.|++.|+.++|+|++|+....+||
T Consensus       240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al  267 (323)
T d1fcha_         240 IRSRYNLGISCINLGAHREAVEHFLEAL  267 (323)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3468888889999999988888888876

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00054  Score=54.18  Aligned_cols=60  Identities=17%  Similarity=0.071  Sum_probs=51.7

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      .....|..+++.|+|..|+..|++++.+-..                 ....+.|++.|+..+|+|.+|+..+.++|
T Consensus        73 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al  132 (259)
T d1xnfa_          73 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-----------------YNYAHLNRGIALYYGGRDKLAQDDLLAFY  132 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-----------------hhhhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3557899999999999999999999986332                 13578999999999999999999999886

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00047  Score=56.79  Aligned_cols=57  Identities=21%  Similarity=0.269  Sum_probs=40.0

Q ss_pred             hhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .|+.+++.|+|..|+..|++++.....                 ...++.|+|.|+.++|+|++|+..+.+||+
T Consensus       311 l~~~~~~~~~~~~A~~~~~~al~~~p~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  367 (388)
T d1w3ba_         311 LANIKREQGNIEEAVRLYRKALEVFPE-----------------FAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHTTSCTT-----------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344555555555555555555543211                 135789999999999999999999999874

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.0012  Score=53.75  Aligned_cols=67  Identities=22%  Similarity=0.215  Sum_probs=52.1

Q ss_pred             cccchhhHHhhh-hhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          183 DRRKMDGNALFK-EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       183 ~~~K~~Gn~~fk-~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..+...|..++. .++|..|+..|++|+.+......           ......+++|+|.++.++|+|.+|+..+.+++
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~-----------~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~  185 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-----------VALSNKCFIKCADLKALDGQYIEASDIYSKLI  185 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc-----------hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence            345566767766 49999999999999987643210           23345689999999999999999999998875

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.0027  Score=51.17  Aligned_cols=61  Identities=7%  Similarity=0.061  Sum_probs=49.7

Q ss_pred             hhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          188 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       188 ~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ++..++..|+|..|+..|++++.......            ...+..++++++.|+..+|+|++|+....+++
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~------------~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   78 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGW------------FYSRIVATSVLGEVLHCKGELTRSLALMQQTE   78 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTC------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCC------------cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            58888999999999999999998754321            12345678899999999999999999888775

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0062  Score=53.59  Aligned_cols=62  Identities=10%  Similarity=-0.108  Sum_probs=53.5

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ..+-..|.-+..+++|..|+..|++|+.+....                 ...|+|+|.++...+++.+|+.++.+||.
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~-----------------~~~~~~Lg~~~~~~~~~~~A~~~y~ral~  214 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN-----------------GQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-----------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-----------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            345567999999999999999999999875432                 36899999999999999999999999873

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.76  E-value=0.0086  Score=42.66  Aligned_cols=29  Identities=17%  Similarity=0.193  Sum_probs=26.7

Q ss_pred             hhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          233 NPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       233 ~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      .-|+.|+|.+|.|+|+|..|+.+|..+|+
T Consensus        73 rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          73 RECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            36999999999999999999999999874

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0022  Score=53.14  Aligned_cols=77  Identities=9%  Similarity=0.032  Sum_probs=44.6

Q ss_pred             ccchhhHHhhhhh-hHHHHHHHHHHHHHhhccccc-----------cccchh---HHH---HHHHhhhhhhhHHHHHHHH
Q 024876          184 RRKMDGNALFKEE-KLEEAMQQYEMAIAYMGDDFM-----------FQLFGK---YRD---MALAVKNPCHLNMAACLLK  245 (261)
Q Consensus       184 ~~K~~Gn~~fk~~-~~~~A~~~Y~kal~~l~~~~~-----------~~~~~~---~~~---~~~~l~~~~~~N~A~c~lK  245 (261)
                      ....+|+-+.+.+ +|..|+..|.+++..-.....           ....++   ...   ++..-...+++|++.|+.+
T Consensus        79 a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~  158 (315)
T d2h6fa1          79 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE  158 (315)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH
Confidence            3466677766654 477888888877765432100           000000   000   1122235567788888888


Q ss_pred             hhCHHHHHHHHHhhc
Q 024876          246 LKRYEEAIGQCSLVS  260 (261)
Q Consensus       246 l~~~~~ai~~c~~aL  260 (261)
                      +++|++|+..++++|
T Consensus       159 ~~~~~~Al~~~~~al  173 (315)
T d2h6fa1         159 FKLWDNELQYVDQLL  173 (315)
T ss_dssp             HTCCTTHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHH
Confidence            888888888877776

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.011  Score=47.45  Aligned_cols=63  Identities=13%  Similarity=-0.139  Sum_probs=49.6

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..|..++..|+|..|+..|++++.......           .......++.++|.+|.++|++++|+....+||
T Consensus       256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         256 NIARAQILLGEFEPAEIVLEELNENARSLR-----------LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL  318 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhhcc-----------cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            357778888999999999999887654210           123345689999999999999999999999886

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.49  E-value=0.0064  Score=44.30  Aligned_cols=56  Identities=18%  Similarity=0.028  Sum_probs=43.3

Q ss_pred             hHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhh----------CHHHHHHHHHh
Q 024876          189 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK----------RYEEAIGQCSL  258 (261)
Q Consensus       189 Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~----------~~~~ai~~c~~  258 (261)
                      ++.+=+.+.|.+|+..|++|+.+-..+                 ..+++|++.|++.++          .+++|+..+.+
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~P~~-----------------~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~k   66 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSNPLD-----------------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEE   66 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhCCcc-----------------hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence            445556788999999999999874322                 368999999998654          45789999988


Q ss_pred             hcC
Q 024876          259 VSK  261 (261)
Q Consensus       259 aL~  261 (261)
                      ||+
T Consensus        67 Al~   69 (145)
T d1zu2a1          67 ALL   69 (145)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            873

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.19  E-value=0.012  Score=44.43  Aligned_cols=62  Identities=11%  Similarity=0.085  Sum_probs=51.5

Q ss_pred             hhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhh
Q 024876          181 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  259 (261)
Q Consensus       181 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~a  259 (261)
                      ........++.+.+.|+|..|+..+++++.+-..                 .-.+|.++..++.++|++.+|+..+.++
T Consensus        66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-----------------~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPY-----------------REPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------------CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-----------------cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3345667899999999999999999999986332                 2369999999999999999999877654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.011  Score=48.67  Aligned_cols=77  Identities=10%  Similarity=-0.005  Sum_probs=47.4

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc---------cccc---hhHHH------HHHHhhhhhhhHHHHHHHH
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM---------FQLF---GKYRD------MALAVKNPCHLNMAACLLK  245 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~---------~~~~---~~~~~------~~~~l~~~~~~N~A~c~lK  245 (261)
                      .+-..|..+-+.+++.+|+..|.+||.+-.....         ....   ++...      ++..-...++.|++.|+.+
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~  124 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW  124 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh
Confidence            3444567777889999999999999987543210         0000   11110      1222334467777777777


Q ss_pred             hhCHHHHHHHHHhhc
Q 024876          246 LKRYEEAIGQCSLVS  260 (261)
Q Consensus       246 l~~~~~ai~~c~~aL  260 (261)
                      +|++.+|+..+++||
T Consensus       125 l~~~~eAl~~~~kal  139 (315)
T d2h6fa1         125 LRDPSQELEFIADIL  139 (315)
T ss_dssp             HTCCTTHHHHHHHHH
T ss_pred             hccHHHHHHHHhhhh
Confidence            777777777777765

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.019  Score=38.35  Aligned_cols=48  Identities=8%  Similarity=0.068  Sum_probs=36.2

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhh
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK  247 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~  247 (261)
                      ..+...|+.+++.|+|.+|+..|+++|++-...                 ..++.|++.+..-++
T Consensus        47 ~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~-----------------~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          47 SVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH-----------------QRANGNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC-----------------HHHHHHHHHHHHHhC
Confidence            445668999999999999999999999874321                 247778777655443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.47  E-value=0.024  Score=40.99  Aligned_cols=50  Identities=12%  Similarity=0.155  Sum_probs=37.8

Q ss_pred             hhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhC-----------HHHHHHHHHhhc
Q 024876          194 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR-----------YEEAIGQCSLVS  260 (261)
Q Consensus       194 k~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~-----------~~~ai~~c~~aL  260 (261)
                      ..+.+.+|+..|++|+++-..                 ...++.|++.+|..+++           |.+|+....+||
T Consensus        53 ~~~~~~~Ai~~~~kAl~l~P~-----------------~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal  113 (145)
T d1zu2a1          53 AKQMIQEAITKFEEALLIDPK-----------------KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV  113 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcch-----------------hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccc
Confidence            356678899999999976322                 13588999999988764           688888877776

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.84  E-value=0.03  Score=37.64  Aligned_cols=66  Identities=15%  Similarity=0.030  Sum_probs=47.3

Q ss_pred             hHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHH
Q 024876          177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACL  243 (261)
Q Consensus       177 e~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~  243 (261)
                      ..+..|..+-.++..+=+.|+|..|+.+|..|+.+|-..... ..+......-.-++.-|+++|-..
T Consensus        10 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~-e~~~~~k~~l~~k~~eYl~RAE~L   75 (93)
T d1wfda_          10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKG-TKESSKRCVLRTKISGYMDRAENI   75 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHHHH
Confidence            346677777888899999999999999999999988653221 123344445555667778887664

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.57  E-value=0.016  Score=37.51  Aligned_cols=66  Identities=20%  Similarity=0.158  Sum_probs=41.6

Q ss_pred             hHhhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHH
Q 024876          177 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAAC  242 (261)
Q Consensus       177 e~~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c  242 (261)
                      ..++.|..+-.++..+=+.|+|..|+.+|..|+.+|-.....+..++.....-.-++.-|+++|-.
T Consensus         6 ~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~~e~~~~~~k~~l~~k~~~Yl~RAE~   71 (77)
T d1wr0a1           6 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEK   71 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTGGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            345666777777888788999999999999999987543111111122222333445566666643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.35  E-value=0.065  Score=43.53  Aligned_cols=58  Identities=9%  Similarity=-0.123  Sum_probs=41.8

Q ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHHhhCHHHHHHHHHhhcC
Q 024876          187 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       187 ~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lKl~~~~~ai~~c~~aL~  261 (261)
                      ..|+.+...+++..|+..|.+++..-                 .-...++.++|.|+..++++++|+.++.+|++
T Consensus       247 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----------------p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~  304 (334)
T d1dcea1         247 LSVEKSTVLQSELESCKELQELEPEN-----------------KWCLLTIILLMRALDPLLYEKETLQYFSTLKA  304 (334)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhC-----------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34555555666666666666665431                 12346889999999999999999999999863

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.16  E-value=0.1  Score=33.70  Aligned_cols=37  Identities=22%  Similarity=0.348  Sum_probs=30.8

Q ss_pred             hhhhcccchhhHHhhhhhhHHHHHHHHHHHHHhhccc
Q 024876          179 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDD  215 (261)
Q Consensus       179 ~~~a~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~  215 (261)
                      +..|...--++..+.+.|+|.+|+.+|++|..++..-
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA   41 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA   41 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            4555666677888999999999999999999998653

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=90.13  E-value=0.22  Score=38.63  Aligned_cols=56  Identities=18%  Similarity=0.169  Sum_probs=38.5

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhhccccccccchhHHHHHHHhhhhhhhHHHHHHHH----hhCHHHHHHHHHh
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK----LKRYEEAIGQCSL  258 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~l~~~~~~N~A~c~lK----l~~~~~ai~~c~~  258 (261)
                      .+-..|..+|++++|.+|+..|++|.+.=+                   ..++.||+.+|++    ..++..|+.....
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~-------------------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~   63 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDLKE-------------------NSGCFNLGVLYYQGQGVEKNLKKAASFYAK   63 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHcCCCcchhHHHHHHhhcc
Confidence            344568899999999999999999986411                   1355666666665    4456555554443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.51  E-value=0.1  Score=45.45  Aligned_cols=28  Identities=7%  Similarity=0.070  Sum_probs=25.7

Q ss_pred             hhhhhHHHHHHHHhhCHHHHHHHHHhhc
Q 024876          233 NPCHLNMAACLLKLKRYEEAIGQCSLVS  260 (261)
Q Consensus       233 ~~~~~N~A~c~lKl~~~~~ai~~c~~aL  260 (261)
                      ..++.|++.++..+++|++|+.++.+|+
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~  179 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAA  179 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            3589999999999999999999999986

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.60  E-value=0.48  Score=37.99  Aligned_cols=79  Identities=4%  Similarity=-0.061  Sum_probs=46.4

Q ss_pred             cccchhhHHhhhhhhHHHHHHHHHHHHHhhccccc-----------ccc--chhHH---HHHHHh---hhh-hhhHHHHH
Q 024876          183 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQL--FGKYR---DMALAV---KNP-CHLNMAAC  242 (261)
Q Consensus       183 ~~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l~~~~~-----------~~~--~~~~~---~~~~~l---~~~-~~~N~A~c  242 (261)
                      ..+...|+..+..+.+..|+..|++++..-.....           ...  .++..   ...-.+   ... .+.+++.+
T Consensus        74 ~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~  153 (334)
T d1dcea1          74 QHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA  153 (334)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHH
Confidence            34455667778888899999999999875432110           000  01111   111111   122 34566677


Q ss_pred             HHHhhCHHHHHHHHHhhcC
Q 024876          243 LLKLKRYEEAIGQCSLVSK  261 (261)
Q Consensus       243 ~lKl~~~~~ai~~c~~aL~  261 (261)
                      +...+.+..|+..++++|+
T Consensus       154 ~~~~~~~~~Al~~~~~~i~  172 (334)
T d1dcea1         154 AQAAVAPAEELAFTDSLIT  172 (334)
T ss_dssp             HHTCCCHHHHHHHHHTTTT
T ss_pred             HHhccccHHHHHHHHHHHH
Confidence            7778888888888887763

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.25  E-value=0.5  Score=32.60  Aligned_cols=29  Identities=7%  Similarity=-0.055  Sum_probs=25.9

Q ss_pred             ccchhhHHhhhhhhHHHHHHHHHHHHHhh
Q 024876          184 RRKMDGNALFKEEKLEEAMQQYEMAIAYM  212 (261)
Q Consensus       184 ~~K~~Gn~~fk~~~~~~A~~~Y~kal~~l  212 (261)
                      .+...|..+++.|+|..|++.|+++|.+-
T Consensus        74 ~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          74 YVFYLAVGNYRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhC
Confidence            45678999999999999999999999863