Citrus Sinensis ID: 024878

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
MTSVRNNLMPPGLVSNLEQVLLNKKKKSKDNDDDGDDGTSKQSNEEANESTEPSTSDSTENVDSSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPLTNKVCPSKVVCEEY
ccccccccccHHHHHcHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHccccEEEEEccccccccccccccccccEEEEEEEccccEEEEEcccHHHHHHHHHHccccccccccEEEEcccccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccccccccEEEEEEEc
ccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHccccEEEEEccccccccccccccccccEEEEEEccccEEEEEEccccHHHHHHHHHHHccccccccEEEEEEcccccccccEEEcHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccHHccEEEEEcccccc
mtsvrnnlmppglvsNLEQVLLNKkkkskdndddgddgtskqsneeanestepstsdstenvdsskpvllvtngdgiespgLVYLVEALVREGlynvhvcapqsdksvsghsvTLRETIAVSSAeingatayevsgtpvdCVSLALSGalfswskpllvisginrgsscghhmFYSGVVAGAREALIcgvpslsislnwkkdesqesdfKDAVSVCLPLInaatrdigkgifprscllnveiptspltnkvcpskvvceey
mtsvrnnlmppglvsNLEQVLLNKkkkskdndddgddgtskqsneeanestepstsdstenvdssKPVLLVtngdgiesPGLVYLVEALVREGLYNVHVCapqsdksvsghsVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLnveiptspltnkvcpskvvceey
MTSVRNNLMPPGLVSNLEQVLLnkkkkskdndddgddgtskQSNEEANestepstsdsteNVDSSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPLTNKVCPSKVVCEEY
*******************************************************************VLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQ******GHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKK******DFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPLTNKVCPSKVV****
*********PPGLVSNLE*************************************************VLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPLTNKVCPSKVVCEEY
MTSVRNNLMPPGLVSNLEQVLLNKK***************************************SKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQS*********TLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWK*********KDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPLTNKVCPSKVVCEEY
*****NNLMPPGLVSNLEQVLLNK****************************************SKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPLTNKVCPSKVV****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTSVRNNLMPPGLVSNLEQVLLNKKKKSKDNDDDGDDGTSKQSNEEANESTEPSTSDSTENVDSSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPLTNKVCPSKVVCEEY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query261 2.2.26 [Sep-21-2011]
Q24WI0251 5'-nucleotidase SurE OS=D yes no 0.613 0.637 0.397 9e-26
B8FYS8251 5'-nucleotidase SurE OS=D yes no 0.613 0.637 0.397 9e-26
A1VY14258 5'-nucleotidase SurE OS=C yes no 0.678 0.686 0.371 8e-25
A8FK82258 5'-nucleotidase SurE OS=C yes no 0.678 0.686 0.371 8e-25
Q5HWH7258 5'-nucleotidase SurE OS=C yes no 0.678 0.686 0.371 9e-25
Q9PIK6258 5'-nucleotidase SurE OS=C yes no 0.678 0.686 0.371 9e-25
C0ZGV3265 5'-nucleotidase SurE OS=B yes no 0.674 0.664 0.360 1e-23
Q823A7283 5'-nucleotidase SurE 2 OS no no 0.536 0.494 0.398 1e-23
B8FC91253 5'-nucleotidase SurE OS=D yes no 0.636 0.656 0.381 8e-23
A6H213257 5'-nucleotidase SurE OS=F yes no 0.643 0.653 0.386 2e-22
>sp|Q24WI0|SURE_DESHY 5'-nucleotidase SurE OS=Desulfitobacterium hafniense (strain Y51) GN=surE PE=3 SV=1 Back     alignment and function desciption
 Score =  117 bits (293), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/181 (39%), Positives = 103/181 (56%), Gaps = 21/181 (11%)

Query: 69  LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEING 128
           +L+TN DG  +PGL  L   L   G Y+V + AP S KS +GHS+TL E + ++   ++ 
Sbjct: 3   ILLTNDDGYFAPGLQTLYTTLAEAG-YDVFIVAPDSQKSATGHSITLFEPLFITKHSLDR 61

Query: 129 ATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALIC 188
            T Y VSG P DCV LA+ G++    KP LVISGIN G + G  +FYSG V+ A E ++ 
Sbjct: 62  GTGYAVSGKPADCVKLAIQGSII--PKPDLVISGINNGPNLGTDVFYSGTVSAAMEGVLL 119

Query: 189 GVPSLSISLNWKKDESQESDFKDA---VSVCLPLINAATRDIGKGIFPRSCLLNVEIPTS 245
           GVP++++SL          D+K A   V++ LP +      +G G      L+N+ IP  
Sbjct: 120 GVPAIAVSLA----SFSAVDYKPAAQFVALSLPKLR-----LGPG------LININIPPL 164

Query: 246 P 246
           P
Sbjct: 165 P 165
Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates.
Desulfitobacterium hafniense (strain Y51) (taxid: 138119)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 5
>sp|B8FYS8|SURE_DESHD 5'-nucleotidase SurE OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|A1VY14|SURE_CAMJJ 5'-nucleotidase SurE OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|A8FK82|SURE_CAMJ8 5'-nucleotidase SurE OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q5HWH7|SURE_CAMJR 5'-nucleotidase SurE OS=Campylobacter jejuni (strain RM1221) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q9PIK6|SURE_CAMJE 5'-nucleotidase SurE OS=Campylobacter jejuni subsp. jejuni serotype O:2 (strain NCTC 11168) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|C0ZGV3|SURE_BREBN 5'-nucleotidase SurE OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q823A7|SURE2_CHLCV 5'-nucleotidase SurE 2 OS=Chlamydophila caviae (strain GPIC) GN=surE2 PE=3 SV=2 Back     alignment and function description
>sp|B8FC91|SURE_DESAA 5'-nucleotidase SurE OS=Desulfatibacillum alkenivorans (strain AK-01) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|A6H213|SURE_FLAPJ 5'-nucleotidase SurE OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=surE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query261
225442198 384 PREDICTED: 5'-nucleotidase surE [Vitis v 0.911 0.619 0.777 1e-109
224134587 390 predicted protein [Populus trichocarpa] 0.938 0.628 0.756 1e-103
449458159 388 PREDICTED: 5'-nucleotidase SurE-like [Cu 0.919 0.618 0.757 1e-102
307135867 388 acid phosphatase [Cucumis melo subsp. me 0.919 0.618 0.75 1e-101
118484339 394 unknown [Populus trichocarpa] 0.915 0.606 0.730 1e-101
356556819 372 PREDICTED: 5'-nucleotidase surE-like [Gl 0.873 0.612 0.730 1e-99
359807197 375 uncharacterized protein LOC100779772 [Gl 0.892 0.621 0.724 3e-99
224128690 386 predicted protein [Populus trichocarpa] 0.888 0.601 0.733 1e-98
357454581 377 5'-nucleotidase surE [Medicago truncatul 0.877 0.607 0.689 9e-94
297842033 381 hypothetical protein ARALYDRAFT_476423 [ 0.911 0.624 0.695 5e-91
>gi|225442198|ref|XP_002276942.1| PREDICTED: 5'-nucleotidase surE [Vitis vinifera] gi|297743037|emb|CBI35904.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/252 (77%), Positives = 221/252 (87%), Gaps = 14/252 (5%)

Query: 2   TSVRNNLMPPGLVSNLEQVLLNKKKKSKDNDDDGDDGTSKQSNEEANESTEPSTSDSTE- 60
           TSV+NN +PPGLVSNL++VLLN+K  S+++    +D           EST+PS+SD+ E 
Sbjct: 3   TSVKNNFLPPGLVSNLQEVLLNRKGGSENDPSKSND-----------ESTQPSSSDAVEA 51

Query: 61  --NVDSSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRET 118
             + + SKPV+LVTN DGIE+PGL +LVEALVR+GL NVHVCAPQSDKSVSGHSVTLRET
Sbjct: 52  NSDTECSKPVVLVTNADGIEAPGLNFLVEALVRDGLCNVHVCAPQSDKSVSGHSVTLRET 111

Query: 119 IAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGV 178
           +AV+SAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGV
Sbjct: 112 VAVTSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGV 171

Query: 179 VAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLL 238
           VAGAREAL CGVPS+SISLNWKKDESQESDFKDAV+VCLPLINAA RDI KG+FP+SCLL
Sbjct: 172 VAGAREALFCGVPSMSISLNWKKDESQESDFKDAVTVCLPLINAAIRDIEKGVFPKSCLL 231

Query: 239 NVEIPTSPLTNK 250
           N+EIP SPLTNK
Sbjct: 232 NIEIPASPLTNK 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224134587|ref|XP_002327441.1| predicted protein [Populus trichocarpa] gi|222835995|gb|EEE74416.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449458159|ref|XP_004146815.1| PREDICTED: 5'-nucleotidase SurE-like [Cucumis sativus] gi|449476647|ref|XP_004154795.1| PREDICTED: 5'-nucleotidase SurE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307135867|gb|ADN33735.1| acid phosphatase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|118484339|gb|ABK94047.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356556819|ref|XP_003546718.1| PREDICTED: 5'-nucleotidase surE-like [Glycine max] Back     alignment and taxonomy information
>gi|359807197|ref|NP_001241615.1| uncharacterized protein LOC100779772 [Glycine max] gi|255641206|gb|ACU20880.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224128690|ref|XP_002329066.1| predicted protein [Populus trichocarpa] gi|222839737|gb|EEE78060.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357454581|ref|XP_003597571.1| 5'-nucleotidase surE [Medicago truncatula] gi|355486619|gb|AES67822.1| 5'-nucleotidase surE [Medicago truncatula] Back     alignment and taxonomy information
>gi|297842033|ref|XP_002888898.1| hypothetical protein ARALYDRAFT_476423 [Arabidopsis lyrata subsp. lyrata] gi|297334739|gb|EFH65157.1| hypothetical protein ARALYDRAFT_476423 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query261
TAIR|locus:2032652 385 AT1G72880 "AT1G72880" [Arabido 0.931 0.631 0.653 9.7e-80
TAIR|locus:2129510 315 AT4G14930 "AT4G14930" [Arabido 0.720 0.596 0.476 2.8e-43
TIGR_CMR|CJE_0339258 CJE_0339 "acid phosphatase Sur 0.670 0.678 0.386 3.6e-25
TIGR_CMR|GSU_1523262 GSU_1523 "stationary-phase sur 0.628 0.625 0.376 3.8e-23
TIGR_CMR|CHY_0957264 CHY_0957 "acid phosphatase Sur 0.655 0.647 0.370 4.8e-23
UNIPROTKB|Q9KI21258 surE "5'-nucleotidase SurE" [C 0.624 0.631 0.353 1.5e-19
TIGR_CMR|CBU_1671258 CBU_1671 "stationary-phase sur 0.624 0.631 0.353 1.5e-19
TIGR_CMR|DET_0797265 DET_0797 "acid phosphatase Sur 0.643 0.633 0.351 5.1e-19
UNIPROTKB|P0A840253 surE "broad specificity 5'(3') 0.620 0.640 0.35 3.6e-18
UNIPROTKB|Q9KUI9250 surE "5'-nucleotidase SurE" [V 0.624 0.652 0.357 5.8e-18
TAIR|locus:2032652 AT1G72880 "AT1G72880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 164/251 (65%), Positives = 186/251 (74%)

Query:     1 MTSVRNNLMPPGLVSNLEQVLLXXXXXXXXXXXXXXXXXXXQSNEEA-NXXXXXXXXXXX 59
             MTS +NN +   LVSNL+ VL                     S EEA +           
Sbjct:     1 MTS-KNNGLSAALVSNLQDVL------SKRKVGNEEKVGSDGSAEEAPSTSDSVDVASVE 53

Query:    60 XNVDSSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETI 119
               +D S+P++LVTNGDGI+SPGLV LVEALV EGLYNVHVCAPQ+DKS S HS T  ETI
Sbjct:    54 EEIDDSRPIVLVTNGDGIDSPGLVSLVEALVLEGLYNVHVCAPQTDKSASAHSTTPGETI 113

Query:   120 AVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVV 179
             AVSS ++ GATA+EVSGTPVDC+SL LSGALF+WSKP+LVISGIN+GSSCGH MFYSG V
Sbjct:   114 AVSSVKLKGATAFEVSGTPVDCISLGLSGALFAWSKPILVISGINQGSSCGHQMFYSGAV 173

Query:   180 AGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLN 239
             AG REALI GVPSLSISLNWKK+ESQES FKDAV VCLPLINA  RDI KG+FP+ C LN
Sbjct:   174 AGGREALISGVPSLSISLNWKKNESQESHFKDAVGVCLPLINATIRDIAKGVFPKDCSLN 233

Query:   240 VEIPTSPLTNK 250
             +EIPTSP +NK
Sbjct:   234 IEIPTSPSSNK 244
GO:0003993 "acid phosphatase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0016787 "hydrolase activity" evidence=IEA
TAIR|locus:2129510 AT4G14930 "AT4G14930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0339 CJE_0339 "acid phosphatase SurE" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1523 GSU_1523 "stationary-phase survival protein SurE" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0957 CHY_0957 "acid phosphatase SurE" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KI21 surE "5'-nucleotidase SurE" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1671 CBU_1671 "stationary-phase survival protein SurE" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0797 DET_0797 "acid phosphatase SurE" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|P0A840 surE "broad specificity 5'(3')-nucleotidase and polyphosphatase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KUI9 surE "5'-nucleotidase SurE" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3LOW CONFIDENCE prediction!
3rd Layer3.1.3.5LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00034123001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (384 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00002094001
SubName- Full=Chromosome chr19 scaffold_126, whole genome shotgun sequence; (578 aa)
     •  0.907
GSVIVG00025551001
RecName- Full=Adenylosuccinate synthetase; EC=6.3.4.4;; Plays an important role in the de novo [...] (489 aa)
•    •  0.903
GSVIVG00006894001
SubName- Full=Putative uncharacterized protein (Chromosome chr10 scaffold_179, whole genome sho [...] (355 aa)
     •  0.901
GSVIVG00000429001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (534 aa)
•    •  0.901
GSVIVG00038865001
SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (825 aa)
     •  0.899
GSVIVG00036953001
SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (417 aa)
     •  0.899
GSVIVG00036692001
SubName- Full=Chromosome chr15 scaffold_82, whole genome shotgun sequence; (252 aa)
     •  0.899
GSVIVG00036344001
RecName- Full=Thymidylate synthase; EC=2.1.1.45; (284 aa)
     •  0.899
GSVIVG00035062001
SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (221 aa)
     •  0.899
GSVIVG00034853001
SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (250 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
pfam01975188 pfam01975, SurE, Survival protein SurE 7e-63
PRK00346250 PRK00346, surE, 5'(3')-nucleotidase/polyphosphatas 3e-44
COG0496252 COG0496, SurE, Predicted acid phosphatase [General 4e-40
TIGR00087244 TIGR00087, surE, 5'/3'-nucleotidase SurE 1e-34
PRK13933253 PRK13933, PRK13933, stationary phase survival prot 3e-33
PRK13935253 PRK13935, PRK13935, stationary phase survival prot 4e-31
PRK13932257 PRK13932, PRK13932, stationary phase survival prot 5e-29
PRK13934266 PRK13934, PRK13934, stationary phase survival prot 4e-20
PRK13931261 PRK13931, PRK13931, stationary phase survival prot 1e-15
>gnl|CDD|216821 pfam01975, SurE, Survival protein SurE Back     alignment and domain information 
 Score =  195 bits (497), Expect = 7e-63
 Identities = 74/188 (39%), Positives = 97/188 (51%), Gaps = 16/188 (8%)

Query: 70  LVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGA 129
           L+TN DGI +PG+  L EAL   G   V V AP  ++S  GHS+TL   + V   +    
Sbjct: 4   LLTNDDGIHAPGIRALAEALKALG--EVTVVAPDREQSGVGHSITLHRPLRV---KKVDP 58

Query: 130 TAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICG 189
            AY V+GTP DCV L L+G L    KP LV+SGIN G++ G  + YSG V  A EA + G
Sbjct: 59  GAYAVNGTPADCVKLGLNG-LLDDKKPDLVVSGINHGANLGTDVLYSGTVGAAMEAALLG 117

Query: 190 VPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPLTN 249
           +PS+++SL         S+ KD       L+      + K   P   LLNV IP  P + 
Sbjct: 118 IPSIAVSLAGN------SEEKDDFETAAKLVRRLVEKLLKNGLPPGTLLNVNIPDLPPSE 171

Query: 250 ----KVCP 253
               KV  
Sbjct: 172 IKGIKVTR 179

E. coli cells with the surE gene disrupted are found to survive poorly in stationary phase. It is suggested that SurE may be involved in stress response. Yeast also contains a member of the family, probable tubulin-tyrosine ligase PBY1. Yarrowia lipolytica PHO2 can complement a mutation in acid phosphatase, suggesting that members of this family could be phosphatases. Length = 188
>gnl|CDD|234732 PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional Back     alignment and domain information
>gnl|CDD|223570 COG0496, SurE, Predicted acid phosphatase [General function prediction only] Back     alignment and domain information
>gnl|CDD|232819 TIGR00087, surE, 5'/3'-nucleotidase SurE Back     alignment and domain information
>gnl|CDD|184406 PRK13933, PRK13933, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|237566 PRK13935, PRK13935, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|172445 PRK13932, PRK13932, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|237565 PRK13934, PRK13934, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|184405 PRK13931, PRK13931, stationary phase survival protein SurE; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 261
PF01975196 SurE: Survival protein SurE; InterPro: IPR002828 T 100.0
PRK13932257 stationary phase survival protein SurE; Provisiona 100.0
PRK13931261 stationary phase survival protein SurE; Provisiona 100.0
PRK13933253 stationary phase survival protein SurE; Provisiona 100.0
TIGR00087244 surE 5'/3'-nucleotidase SurE. E. coli SurE is Reco 100.0
PRK13935253 stationary phase survival protein SurE; Provisiona 100.0
COG0496252 SurE Predicted acid phosphatase [General function 100.0
PRK00346250 surE 5'(3')-nucleotidase/polyphosphatase; Provisio 100.0
PRK13934266 stationary phase survival protein SurE; Provisiona 100.0
cd03784 401 GT1_Gtf_like This family includes the Gtfs, a grou 91.89
PLN02846 462 digalactosyldiacylglycerol synthase 90.15
PF04007 335 DUF354: Protein of unknown function (DUF354); Inte 88.99
cd03814 364 GT1_like_2 This family is most closely related to 85.07
TIGR00661 321 MJ1255 conserved hypothetical protein. This model 84.92
PRK00726 357 murG undecaprenyldiphospho-muramoylpentapeptide be 84.36
TIGR01133 348 murG undecaprenyldiphospho-muramoylpentapeptide be 84.22
PF14336291 DUF4392: Domain of unknown function (DUF4392) 84.07
cd03785 350 GT1_MurG MurG is an N-acetylglucosaminyltransferas 82.8
TIGR01426 392 MGT glycosyltransferase, MGT family. This model de 81.85
PF13439177 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 81.25
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family Back     alignment and domain information 
Probab=100.00  E-value=4.2e-65  Score=447.57  Aligned_cols=188  Identities=41%  Similarity=0.635  Sum_probs=154.2

Q ss_pred             CeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEee----eCCceeEEecCChHHHH
Q 024878           67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAE----INGATAYEVSGTPVDCV  142 (261)
Q Consensus        67 ~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~----~~g~~~y~V~GTPaDCV  142 (261)
                      |||||||||||+||||++|+++|++.| |+|+||||++||||+||++|+++|++++++.    ..+.++|+|+|||+|||
T Consensus         1 M~ILlTNDDGi~a~Gi~aL~~~L~~~g-~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv   79 (196)
T PF01975_consen    1 MRILLTNDDGIDAPGIRALAKALSALG-HDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV   79 (196)
T ss_dssp             SEEEEE-SS-TTSHHHHHHHHHHTTTS-SEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHhcC-CeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence            899999999999999999999998887 8999999999999999999999999998875    35678999999999999


Q ss_pred             HHHHhcccCCCCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeecccCCCCCCccHHHHHHHHHHHHHH
Q 024878          143 SLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINA  222 (261)
Q Consensus       143 ~laL~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~~~~~~~~~~d~~~aa~~~~~li~~  222 (261)
                      ++||+++++ +.+|||||||||+|.|+|.+++||||||||+||+++||||||||++.... ....+|+.+++++.+++++
T Consensus        80 ~~al~~~~~-~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~~~~-~~~~~~~~aa~~~~~~i~~  157 (196)
T PF01975_consen   80 KLALDGLLP-DKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDSDSE-SKDPDFETAARFAVKLIEK  157 (196)
T ss_dssp             HHHHHCTST-TSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESSST--SSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhc-cCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccccCC-CcHHHHHHHHHHHHHHHHH
Confidence            999998764 45699999999999999999999999999999999999999999987532 2334799999998888887


Q ss_pred             HHHHhhcCCCCCCcEEEecCCCCCC-CCCCeeEeeeeecC
Q 024878          223 ATRDIGKGIFPRSCLLNVEIPTSPL-TNKVCPSKVVCEEY  261 (261)
Q Consensus       223 l~~~~~~~~lp~~~~LNVN~P~~~~-~~kg~k~t~~~~~~  261 (261)
                      +.    +..+|++++||||||..+. +.+|+|+|+++|.+
T Consensus       158 ~~----~~~~~~~~~lNVN~P~~~~~~~~g~~~t~~g~~~  193 (196)
T PF01975_consen  158 LL----KNPLPPGVVLNVNFPSVPCEEIKGIKVTRLGRRR  193 (196)
T ss_dssp             HH----HSGSSTTSEEEEEEESS-GGG-SEEEE-B--CCS
T ss_pred             Hh----hcCCCCCcEEEEEcCCCCcccCCCEEEEECCcce
Confidence            65    4567999999999999874 68999999999864

This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
>PRK13932 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>PRK13931 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>PRK13933 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>TIGR00087 surE 5'/3'-nucleotidase SurE Back     alignment and domain information
>PRK13935 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>COG0496 SurE Predicted acid phosphatase [General function prediction only] Back     alignment and domain information
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional Back     alignment and domain information
>PRK13934 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin Back     alignment and domain information
>PLN02846 digalactosyldiacylglycerol synthase Back     alignment and domain information
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length Back     alignment and domain information
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR00661 MJ1255 conserved hypothetical protein Back     alignment and domain information
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>PF14336 DUF4392: Domain of unknown function (DUF4392) Back     alignment and domain information
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis Back     alignment and domain information
>TIGR01426 MGT glycosyltransferase, MGT family Back     alignment and domain information
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
2wqk_A251 Crystal Structure Of Sure Protein From Aquifex Aeol 8e-20
1j9j_A247 Crystal Structure Analysis Of Sure Protein From T.M 2e-19
3ty2_A261 Structure Of A 5'-Nucleotidase (Sure) From Coxiella 4e-18
1ilv_A247 Crystal Structure Analysis Of The Tm107 Length = 24 6e-18
2e69_A244 Crystal Structure Of The Stationary Phase Survival 1e-17
2e6h_A244 Crystal Structure Of E37a Mutant Of The Stationary 3e-17
2v4o_A267 Crystal Structure Of Salmonella Typhimurium Sure At 3e-17
2v4n_A254 Crystal Structure Of Salmonella Typhimurium Sure At 4e-17
1l5x_A280 The 2.0-Angstrom Resolution Crystal Structure Of A 7e-13
>pdb|2WQK|A Chain A, Crystal Structure Of Sure Protein From Aquifex Aeolicus Length = 251 Back     alignment and structure 
Iteration: 1

 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 67  PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEI 126
           P  L+ N DG  SPG+  L EAL  + L  V V AP  + S  GHS+T  E + +   + 
Sbjct: 2   PTFLLVNDDGYFSPGINALREAL--KSLGRVVVVAPDRNLSGVGHSLTFTEPLKMRKIDT 59
Query: 127 NGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREAL 186
           +  T   + GTP DCV L     +    KP LV+SGIN G + G  + YSG V+GA E  
Sbjct: 60  DFYTV--IDGTPADCVHLGYR-VILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGR 116
Query: 187 ICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIP 243
           I G+PS++ S   +++      F++   VC+ ++      + +GI P    LNV IP
Sbjct: 117 ILGIPSIAFSAFGRENIM----FEEIAKVCVDIVKKV---LNEGI-PEDTYLNVNIP 165
>pdb|1J9J|A Chain A, Crystal Structure Analysis Of Sure Protein From T.Maritima Length = 247 Back     alignment and structure
>pdb|3TY2|A Chain A, Structure Of A 5'-Nucleotidase (Sure) From Coxiella Burnetii Length = 261 Back     alignment and structure
>pdb|1ILV|A Chain A, Crystal Structure Analysis Of The Tm107 Length = 247 Back     alignment and structure
>pdb|2E69|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein Sure From Thermus Thermophilus Hb8 In Complex With Sulfate Length = 244 Back     alignment and structure
>pdb|2E6H|A Chain A, Crystal Structure Of E37a Mutant Of The Stationary Phase Survival Protein Sure From Thermus Thermophilus Hb8 Cocrystallized With Manganese And Amp Length = 244 Back     alignment and structure
>pdb|2V4O|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 2.75 Angstrom Resolution In Monoclinic Form Length = 267 Back     alignment and structure
>pdb|2V4N|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 1.7 Angstrom Resolution In Orthorhombic Form Length = 254 Back     alignment and structure
>pdb|1L5X|A Chain A, The 2.0-Angstrom Resolution Crystal Structure Of A Survival Protein E (Sure) Homolog From Pyrobaculum Aerophilum Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
1j9j_A247 Stationary phase surviVal protein; SURE protein, u 2e-47
2phj_A251 5'-nucleotidase SURE; SURE protein, putative acid 3e-47
3ty2_A261 5'-nucleotidase SURE; surviVal protein, phosphatas 3e-47
1l5x_A280 SurviVal protein E; structural genomics, putative 9e-47
2e6c_A244 5'-nucleotidase SURE; SURE protein, cowith mangane 3e-46
2v4n_A254 Multifunctional protein SUR E; hydrolase, surviVal 5e-45
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A* Length = 247 Back     alignment and structure
 Score =  157 bits (399), Expect = 2e-47
 Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 14/186 (7%)

Query: 70  LVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEIN-G 128
           LVTN DGI+S G++ L E L     + V V AP  ++S +GHS+T+   + +    I+  
Sbjct: 4   LVTNDDGIQSKGIIVLAELL--SEEHEVFVVAPDKERSATGHSITIHVPLWMKKVFISER 61

Query: 129 ATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALIC 188
             AY  +GTP DCV LA +  +    +  L++SG+NRG + G  + +SG V+GA E  + 
Sbjct: 62  VVAYSTTGTPADCVKLAYNVVM--DKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMM 119

Query: 189 GVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSPLT 248
            +PS++IS        +  DF+ A    +  +    ++    +     +LN+ +P   + 
Sbjct: 120 NIPSIAISS----ANYESPDFEGAARFLIDFL----KEFDFSLLDPFTMLNINVPAGEIK 171

Query: 249 N-KVCP 253
             +   
Sbjct: 172 GWRFTR 177
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} Length = 261 Back     alignment and structure
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1 Length = 280 Back     alignment and structure
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A Length = 244 Back     alignment and structure
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A Length = 254 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query261
1j9j_A247 Stationary phase surviVal protein; SURE protein, u 100.0
2phj_A251 5'-nucleotidase SURE; SURE protein, putative acid 100.0
2wqk_A251 5'-nucleotidase SURE; SURE protein, putative acid 100.0
3ty2_A261 5'-nucleotidase SURE; surviVal protein, phosphatas 100.0
2v4n_A254 Multifunctional protein SUR E; hydrolase, surviVal 100.0
2e6c_A244 5'-nucleotidase SURE; SURE protein, cowith mangane 100.0
1l5x_A280 SurviVal protein E; structural genomics, putative 100.0
3oti_A 398 CALG3; calicheamicin, TDP, structural genomics, PS 96.2
4fzr_A 398 SSFS6; structural genomics, PSI-biology, protein s 95.89
3tsa_A 391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 94.9
3rsc_A 415 CALG2; TDP, enediyne, structural genomics, PSI-2, 94.81
3otg_A 412 CALG1; calicheamicin, TDP, structural genomics, PS 94.57
3fro_A 439 GLGA glycogen synthase; glycosyltransferase family 94.48
3ia7_A 402 CALG4; glycosysltransferase, calicheamicin, enediy 94.13
3h4t_A 404 Glycosyltransferase GTFA, glycosyltransferase; van 93.58
2iya_A 424 OLEI, oleandomycin glycosyltransferase; carbohydra 93.12
2iyf_A 430 OLED, oleandomycin glycosyltransferase; antibiotic 91.46
4amg_A 400 Snogd; transferase, polyketide biosynthesis, GT1 f 86.72
2iuy_A 342 Avigt4, glycosyltransferase; antibiotics, family G 81.77
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A* Back     alignment and structure
Probab=100.00  E-value=2.1e-64  Score=455.86  Aligned_cols=180  Identities=32%  Similarity=0.497  Sum_probs=162.2

Q ss_pred             CeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeC-CceeEEecCChHHHHHHH
Q 024878           67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEIN-GATAYEVSGTPVDCVSLA  145 (261)
Q Consensus        67 ~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~-g~~~y~V~GTPaDCV~la  145 (261)
                      |||||||||||+||||++|+++|++.|  +|+||||++||||+||++|+++||++++++.. +...|+|+|||+|||++|
T Consensus         1 M~ILlTNDDGi~apGi~aL~~~l~~~g--~V~VVAP~~~~Sg~g~siTl~~pl~~~~~~~~~~~~~~~v~GTPaDCV~la   78 (247)
T 1j9j_A            1 MRILVTNDDGIQSKGIIVLAELLSEEH--EVFVVAPDKERSATGHSITIHVPLWMKKVFISERVVAYSTTGTPADCVKLA   78 (247)
T ss_dssp             CEEEEECSSCTTCHHHHHHHHHHTTTS--EEEEEEESSCCTTCTTCCCCSSCCCEEECCCSSSEEEEEESSCHHHHHHHH
T ss_pred             CeEEEEcCCCCCcHhHHHHHHHHHhCC--CEEEEecCCCCcCCcccccCCCCeEEEEeccCCCCceEEECCcHHHHHHHH
Confidence            799999999999999999999999976  99999999999999999999999999998643 336799999999999999


Q ss_pred             HhcccCCCCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeecccCCCCCCccHHHHHHHHHHHHHHHHH
Q 024878          146 LSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATR  225 (261)
Q Consensus       146 L~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~~~~~~~~~~d~~~aa~~~~~li~~l~~  225 (261)
                      |++++.  .+|||||||||+|.|+|.+++|||||||||||+++||||||||+.+..    ..+|+.|++++.+|+++++ 
T Consensus        79 l~~l~~--~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~~~~----~~~~~~aa~~~~~lv~~l~-  151 (247)
T 1j9j_A           79 YNVVMD--KRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANYE----SPDFEGAARFLIDFLKEFD-  151 (247)
T ss_dssp             HHTTST--TCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEESCSS----SCCHHHHHHHHHHHHHHCC-
T ss_pred             HHhhcc--CCCCEEEECCccCCCCCcCeecchhHHHHHHHHhcCCCeEEEecCCCC----CCCHHHHHHHHHHHHHHHH-
Confidence            998763  589999999999999999999999999999999999999999996421    3489999999888887764 


Q ss_pred             HhhcCCCCCCcEEEecCCCCCCCCCCeeEeeeeec
Q 024878          226 DIGKGIFPRSCLLNVEIPTSPLTNKVCPSKVVCEE  260 (261)
Q Consensus       226 ~~~~~~lp~~~~LNVN~P~~~~~~kg~k~t~~~~~  260 (261)
                         +..||++++||||||  ..++||+|+|++.+.
T Consensus       152 ---~~~lp~~~~lNVN~P--~~~~~g~~~tr~~~~  181 (247)
T 1j9j_A          152 ---FSLLDPFTMLNINVP--AGEIKGWRFTRQSRR  181 (247)
T ss_dssp             ---GGGSCTTCEEEEEEC--SSCCCEEEECBCCCC
T ss_pred             ---HcCCCcccEEEecCC--ccccCceEEEECCCc
Confidence               556899999999999  567999999998763
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus} Back     alignment and structure
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0 Back     alignment and structure
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A Back     alignment and structure
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A Back     alignment and structure
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1 Back     alignment and structure
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* Back     alignment and structure
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 261
d1l5xa_276 c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) { 7e-37
d1j9ja_247 c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga mar 1e-35
>d1l5xa_ c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SurE-like
superfamily: SurE-like
family: SurE-like
domain: SurE homolog PAE2908 (SurE-alpha)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score =  129 bits (325), Expect = 7e-37
 Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 6/178 (3%)

Query: 70  LVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGA 129
           LVTN DG+ SPGL  L +  +  G  +V V AP+S KS +G  +TL + + +   ++ G 
Sbjct: 4   LVTNDDGVHSPGLRLLYQFALSLG--DVDVVAPESPKSATGLGITLHKPLRMYEVDLCGF 61

Query: 130 TAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMFY-SGVVAGAREALIC 188
            A   SGTP D V LA         K  +V+SGIN G +    +   SG +  A +A + 
Sbjct: 62  RAIATSGTPSDTVYLATF---GLGRKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALL 118

Query: 189 GVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVEIPTSP 246
           G+P+L+ S   +      ++ +    +   + + A+  +  G+     +++V  P   
Sbjct: 119 GIPALAYSAYLENWNELLNNKEAVEIMGAVVSSTASYVLKNGMPQGVDVISVNFPRRL 176
>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima [TaxId: 2336]} Length = 247 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query261
d1j9ja_247 SurE homolog TM1662 {Thermotoga maritima [TaxId: 2 100.0
d1l5xa_276 SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyroba 100.0
d2bisa1 437 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 89.27
d1pn3a_ 391 TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi 85.78
d1rzua_ 477 Glycogen synthase 1, GlgA {Agrobacterium tumefacie 85.33
>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SurE-like
superfamily: SurE-like
family: SurE-like
domain: SurE homolog TM1662
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.4e-63  Score=442.60  Aligned_cols=179  Identities=31%  Similarity=0.490  Sum_probs=160.4

Q ss_pred             CeEEEecCCCCCCccHHHHHHHHHhcCCCeEEEEeeCCCCcccccccCCCCceEEEEeeeC-CceeEEecCChHHHHHHH
Q 024878           67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEIN-GATAYEVSGTPVDCVSLA  145 (261)
Q Consensus        67 ~~ILlTNDDGi~SpGi~aL~~aL~~~G~~~V~VvAP~~~qSg~g~siT~~~pl~v~~v~~~-g~~~y~V~GTPaDCV~la  145 (261)
                      |||||||||||+||||++|+++|++ + |+|+||||++||||+|||+|+++|++++++... +.++|+|+|||||||++|
T Consensus         1 M~ILltNDDGi~s~gl~~L~~~l~~-~-~~V~vvAP~~~~S~~g~ait~~~~l~~~~~~~~~~~~~~~v~GTPaDcv~~a   78 (247)
T d1j9ja_           1 MRILVTNDDGIQSKGIIVLAELLSE-E-HEVFVVAPDKERSATGHSITIHVPLWMKKVFISERVVAYSTTGTPADCVKLA   78 (247)
T ss_dssp             CEEEEECSSCTTCHHHHHHHHHHTT-T-SEEEEEEESSCCTTCTTCCCCSSCCCEEECCCSSSEEEEEESSCHHHHHHHH
T ss_pred             CeEEEEcCCCCCChHHHHHHHHHhc-C-CeEEEEecCCCCcCCcccccCCCCcceEEeecCCCceEEEeCCchHHHHHHh
Confidence            8999999999999999999999976 4 799999999999999999999999999998653 567899999999999999


Q ss_pred             HhcccCCCCCCcEEEecCCCCCCCCCcccccchHHHHHHHHHcCCCeeEEeecccCCCCCCccHHHHHHHHHHHHHHHHH
Q 024878          146 LSGALFSWSKPLLVISGINRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLINAATR  225 (261)
Q Consensus       146 L~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EA~~~GIPAIAvS~~~~~~~~~~~d~~~aa~~~~~li~~l~~  225 (261)
                      |++++  +.+|||||||||+|.|+|.+++||||||||+||+++||||||||+.+.    ...+|+.+++++.++++++  
T Consensus        79 l~~l~--~~~pDlVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~gipsiA~S~~~~----~~~~~~~a~~~~~~li~~l--  150 (247)
T d1j9ja_          79 YNVVM--DKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANY----ESPDFEGAARFLIDFLKEF--  150 (247)
T ss_dssp             HHTTS--TTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEESCS----SSCCHHHHHHHHHHHHHHC--
T ss_pred             hhhcc--cCcccEEEecccCCCccchhhhhHHHHHHHHHHHhcCCCcceehhhhh----cccchhHHHHHHHHHHHHH--
Confidence            99754  358999999999999999999999999999999999999999999754    2458999999887777664  


Q ss_pred             HhhcCCCCCCcEEEecCCCCCCCCCCeeEeeeee
Q 024878          226 DIGKGIFPRSCLLNVEIPTSPLTNKVCPSKVVCE  259 (261)
Q Consensus       226 ~~~~~~lp~~~~LNVN~P~~~~~~kg~k~t~~~~  259 (261)
                        .+..+|.+++||||||.  .++||+|+|+..+
T Consensus       151 --~~~~~p~~~~lNVN~P~--~~~kG~k~t~~g~  180 (247)
T d1j9ja_         151 --DFSLLDPFTMLNINVPA--GEIKGWRFTRQSR  180 (247)
T ss_dssp             --CGGGSCTTCEEEEEECS--SCCCEEEECBCCC
T ss_pred             --HhcCCcccccccCCCCh--hhccCceeeeecc
Confidence              45678999999999996  3689999998765
>d1l5xa_ c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure