Citrus Sinensis ID: 024880

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
MPPSSSSGYSYANGSGGNSKGFNPRNAEDIFAEFFGSSPFGFGSAGPGKSTRFQSEGGGTFGGFGMGENIFRTYSDGSVPRKPPPVESKLPCSLEELYSGSTRKMKISRTVVDANGRQTPESEILTIDVKPGWKKGTKITFPDKGNEQPNQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDLNIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGLKRALGG
ccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccEEEEEEEEEEcccccEEEEEEEEEEEEccccccccEEEcccccccccccccccEEEEEccccccccEEEcccEEEEEEcccccccccEEEEEEcccccEEEEccccccccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHccc
ccccccccccccccccccEEEEccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHccccccHHHHHccccEEEEEEcEEEcccccEEEEEEEEEEEEccccccccEEEcccccccccccccccEEEEEEccccccEEEccccEEEEEEEEHHHHHcccEEEEEcccccEEEEEccccEccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHccc
mppssssgysyangsggnskgfnprnaedifaeffgsspfgfgsagpgkstrfqsegggtfggfgmgenifrtysdgsvprkpppvesklpcsleelysgstrkmkISRTVVdangrqtpeseiltidvkpgwkkgtkitfpdkgneqpnqlpadlvfvidekphdvykrdsndliVNHKVSLAEalggtsvslitldgrdlniavtdiispgfelgipgegmpiarepgnrgdlrikfevkfptkltpeQRAGLKRALGG
mppssssgysyaNGSGGNSKGFNPRNAEDIFAEFFGSSPFGFGSAGPGKSTRFQSEGGGTFGGFGMGENIFRTYSDgsvprkpppvesklpcsleelysgstrkmkisrtvvdangrqtpeseiltidvkpgwkkGTKItfpdkgneqpnQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDLNIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEvkfptkltpeqraglkralgg
MPPssssgysyangsggnsKGFNPRNAEDIfaeffgsspfgfgsagpgKSTRFQSEgggtfggfgmgENIFRTYSDGSVPRKPPPVESKLPCSLEELYSGSTRKMKISRTVVDANGRQTPESEILTIDVKPGWKKGTKITFPDKGNEQPNQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDLNIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGLKRALGG
*****************************IFAEFFG************************FGGFGMGENIFRT**************************************************ILTIDVKPGWKKGTKIT************PADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDLNIAVTDIISPGFELGIPGEGM***********LRIKFEVK*******************
***********************PRNAEDIFAEFF******************************************************LPCSLEELYSGSTRKMKIS**************EILTIDVKPGWKKGTKITFPDKGNEQPNQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDLNIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGLKRALGG
***************GGNSKGFNPRNAEDIFAEFFGSSPFGFGSAGPGKSTRFQSEGGGTFGGFGMGENIFRTYSDGSVPRKPPPVESKLPCSLEELYSGSTRKMKISRTVVDANGRQTPESEILTIDVKPGWKKGTKITFPDKGNEQPNQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDLNIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGLKRALGG
****************GNSKGFNPRNAEDIFAEFFGSSPFGFGSAGPGKSTRFQSEGGGTFGGFGM****************PPPVESKLPCSLEELYSGSTRKMKISRTVVDANGRQTPESEILTIDVKPGWKKGTKITFPDKGNEQPNQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDLNIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGLKRALGG
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPPSSSSGYSYANGSGGNSKGFNPRNAEDIFAEFFGSSPFGFGSAGPGKSTRFQSEGGGTFGGFGMGENIFRTYSDGSVPRKPPPVESKLPCSLEELYSGSTRKMKISRTVVDANGRQTPESEILTIDVKPGWKKGTKITFPDKGNEQPNQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDLNIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGLKRALGG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query261 2.2.26 [Sep-21-2011]
Q5R8J8337 DnaJ homolog subfamily B yes no 0.877 0.679 0.447 4e-47
Q9UDY4337 DnaJ homolog subfamily B yes no 0.877 0.679 0.447 6e-47
P25685340 DnaJ homolog subfamily B no no 0.854 0.655 0.432 8e-46
Q9D832337 DnaJ homolog subfamily B yes no 0.877 0.679 0.434 1e-45
Q9QYJ3340 DnaJ homolog subfamily B no no 0.873 0.670 0.429 2e-45
Q3MI00340 DnaJ homolog subfamily B yes no 0.854 0.655 0.432 2e-45
Q2KIT4337 DnaJ homolog subfamily B no no 0.877 0.679 0.438 3e-45
P59910316 DnaJ homolog subfamily B no no 0.816 0.674 0.417 2e-43
Q80Y75316 DnaJ homolog subfamily B no no 0.819 0.677 0.4 5e-43
O89114348 DnaJ homolog subfamily B no no 0.873 0.655 0.413 2e-41
>sp|Q5R8J8|DNJB4_PONAB DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2 SV=1 Back     alignment and function desciption
 Score =  188 bits (477), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 8/237 (3%)

Query: 31  FAEFFG-SSPFG--FGS-AGPGKSTRFQSEGGGTFGGFGMGENIF---RTYSDGSVPRKP 83
           FA FFG S+PF   FG   G G+ +      G  F  FG   N +   R     S  ++ 
Sbjct: 98  FAAFFGGSNPFEIFFGRRMGGGRDSEEMEMDGDPFSAFGFSMNGYPRDRNSVGPSRLKQD 157

Query: 84  PPVESKLPCSLEELYSGSTRKMKISRTVVDANGRQ-TPESEILTIDVKPGWKKGTKITFP 142
           PPV  +L  SLEE+YSG T++MKISR  ++A+GR    E +ILTI++K GWK+GTKITFP
Sbjct: 158 PPVIHELRVSLEEIYSGCTKRMKISRKRLNADGRSYRSEDKILTIEIKKGWKEGTKITFP 217

Query: 143 DKGNEQPNQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDL 202
            +G+E PN +PAD+VF+I +K H  +KRD +++I   K+SL EAL G S+++ TLDGR++
Sbjct: 218 REGDETPNSIPADIVFIIKDKDHPKFKRDGSNIIYTAKISLREALCGCSINVPTLDGRNI 277

Query: 203 NIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGLKRAL 259
            ++V DI+ PG    I G G+P  + P  RGDL I+FEV FP  ++   +  L++ L
Sbjct: 278 PMSVNDIVKPGMRRRIIGYGLPFPKNPDQRGDLLIEFEVSFPDTISSSSKEVLRKHL 334
Probable chaperone.
Pongo abelii (taxid: 9601)
>sp|Q9UDY4|DNJB4_HUMAN DnaJ homolog subfamily B member 4 OS=Homo sapiens GN=DNAJB4 PE=1 SV=1 Back     alignment and function description
>sp|P25685|DNJB1_HUMAN DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4 Back     alignment and function description
>sp|Q9D832|DNJB4_MOUSE DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2 SV=1 Back     alignment and function description
>sp|Q9QYJ3|DNJB1_MOUSE DnaJ homolog subfamily B member 1 OS=Mus musculus GN=Dnajb1 PE=2 SV=3 Back     alignment and function description
>sp|Q3MI00|DNJB1_BOVIN DnaJ homolog subfamily B member 1 OS=Bos taurus GN=DNAJB1 PE=2 SV=3 Back     alignment and function description
>sp|Q2KIT4|DNJB4_BOVIN DnaJ homolog subfamily B member 4 OS=Bos taurus GN=DNAJB4 PE=2 SV=1 Back     alignment and function description
>sp|P59910|DJB13_HUMAN DnaJ homolog subfamily B member 13 OS=Homo sapiens GN=DNAJB13 PE=2 SV=1 Back     alignment and function description
>sp|Q80Y75|DJB13_MOUSE DnaJ homolog subfamily B member 13 OS=Mus musculus GN=Dnajb13 PE=2 SV=1 Back     alignment and function description
>sp|O89114|DNJB5_MOUSE DnaJ homolog subfamily B member 5 OS=Mus musculus GN=Dnajb5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query261
449437112335 PREDICTED: dnaJ homolog subfamily B memb 0.900 0.701 0.835 1e-112
255551130293 Protein psi1, putative [Ricinus communis 0.904 0.805 0.814 1e-105
225430093339 PREDICTED: dnaJ homolog subfamily B memb 0.934 0.719 0.762 2e-99
15239455347 putative DNAJ heat shock protein [Arabid 0.977 0.734 0.691 5e-97
297812767347 predicted protein [Arabidopsis lyrata su 0.973 0.731 0.697 6e-97
449533932308 PREDICTED: dnaJ homolog subfamily B memb 0.796 0.675 0.823 9e-97
356518270311 PREDICTED: dnaJ homolog subfamily B memb 0.881 0.739 0.700 7e-95
357466371327 DnaJ homolog subfamily B member [Medicag 0.919 0.733 0.731 5e-93
242080673343 hypothetical protein SORBIDRAFT_07g00416 0.942 0.717 0.671 2e-88
148906823336 unknown [Picea sitchensis] 0.969 0.752 0.621 6e-85
>gi|449437112|ref|XP_004136336.1| PREDICTED: dnaJ homolog subfamily B member 5-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/237 (83%), Positives = 217/237 (91%), Gaps = 2/237 (0%)

Query: 25  RNAEDIFAEFFGSSPFGFGSAGPGKSTRFQSEGGGTFGGFGMGENIFRTYSDGSVPRKPP 84
           RNAEDIFAEFFGSSPFGFGS+GPGKS R+QSEG   FGGFG  ENIFRTYS+   P+KP 
Sbjct: 101 RNAEDIFAEFFGSSPFGFGSSGPGKSMRYQSEG--IFGGFGGSENIFRTYSENVTPKKPA 158

Query: 85  PVESKLPCSLEELYSGSTRKMKISRTVVDANGRQTPESEILTIDVKPGWKKGTKITFPDK 144
           PVESKLPC+LEELYSGSTRKMKISRTVVDANGRQ PE+EILTIDVKPGWKKGTKITFPDK
Sbjct: 159 PVESKLPCTLEELYSGSTRKMKISRTVVDANGRQVPETEILTIDVKPGWKKGTKITFPDK 218

Query: 145 GNEQPNQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDLNI 204
           GNEQPNQLPADLVFVIDEKPHDV+KRD ND+I+NH+V+LAEALGGT+++L TLDGR L+I
Sbjct: 219 GNEQPNQLPADLVFVIDEKPHDVFKRDGNDIIMNHRVTLAEALGGTTINLTTLDGRSLSI 278

Query: 205 AVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGLKRALGG 261
            V DI+SPG+EL I  EGMPI REPGNRGDLRIKF+VKFPT+LTPEQRAGLKRALGG
Sbjct: 279 PVIDIVSPGYELVIAREGMPIVREPGNRGDLRIKFDVKFPTRLTPEQRAGLKRALGG 335

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255551130|ref|XP_002516613.1| Protein psi1, putative [Ricinus communis] gi|223544433|gb|EEF45954.1| Protein psi1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225430093|ref|XP_002284572.1| PREDICTED: dnaJ homolog subfamily B member 13 isoform 1 [Vitis vinifera] gi|296081929|emb|CBI20934.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15239455|ref|NP_197935.1| putative DNAJ heat shock protein [Arabidopsis thaliana] gi|332006076|gb|AED93459.1| putative DNAJ heat shock protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297812767|ref|XP_002874267.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320104|gb|EFH50526.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449533932|ref|XP_004173924.1| PREDICTED: dnaJ homolog subfamily B member 4-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|356518270|ref|XP_003527802.1| PREDICTED: dnaJ homolog subfamily B member 4-like [Glycine max] Back     alignment and taxonomy information
>gi|357466371|ref|XP_003603470.1| DnaJ homolog subfamily B member [Medicago truncatula] gi|355492518|gb|AES73721.1| DnaJ homolog subfamily B member [Medicago truncatula] Back     alignment and taxonomy information
>gi|242080673|ref|XP_002445105.1| hypothetical protein SORBIDRAFT_07g004160 [Sorghum bicolor] gi|241941455|gb|EES14600.1| hypothetical protein SORBIDRAFT_07g004160 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|148906823|gb|ABR16557.1| unknown [Picea sitchensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query261
TAIR|locus:2179429347 AT5G25530 [Arabidopsis thalian 0.923 0.694 0.630 1.6e-79
TAIR|locus:2825170331 AT1G59725 [Arabidopsis thalian 0.701 0.552 0.655 4.3e-61
TAIR|locus:2054809337 AT2G20560 [Arabidopsis thalian 0.896 0.694 0.518 1.5e-60
TAIR|locus:2121368348 AT4G28480 [Arabidopsis thalian 0.915 0.686 0.481 4e-58
TAIR|locus:2179127335 AT5G01390 [Arabidopsis thalian 0.900 0.701 0.485 5.1e-58
TAIR|locus:2097638323 AT3G08910 [Arabidopsis thalian 0.720 0.582 0.563 1.4e-57
TAIR|locus:2097880350 AT3G47940 [Arabidopsis thalian 0.881 0.657 0.493 1.7e-57
TAIR|locus:2054799284 AT2G20550 [Arabidopsis thalian 0.689 0.633 0.588 3.3e-57
TAIR|locus:2012743349 AT1G10350 [Arabidopsis thalian 0.689 0.515 0.607 9.6e-57
TAIR|locus:2205856357 AT1G44160 [Arabidopsis thalian 0.712 0.521 0.491 6.4e-44
TAIR|locus:2179429 AT5G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 157/249 (63%), Positives = 188/249 (75%)

Query:    21 GFNPRNAEDIXXXXXXXXXXXXXXXXX-XKSTRFQSEXXXXXXXXX------XXENIFRT 73
             GFNPRNAEDI                   +S RFQS+                  NIFRT
Sbjct:    99 GFNPRNAEDIFAEFFGSSPFGFGSAGGPGRSMRFQSDGGGGMFGGFGGGNNGSENNIFRT 158

Query:    74 YSDGS-VPRKPPPVESKLPCSLEELYSGSTRKMKISRTVVDANGRQTPESEILTIDVKPG 132
             YS+G+  P+KPPPVESKLPCSLEELYSGSTRKMKISR++VDANGRQ  E+EILTI VKPG
Sbjct:   159 YSEGTPAPKKPPPVESKLPCSLEELYSGSTRKMKISRSIVDANGRQAQETEILTIVVKPG 218

Query:   133 WKKGTKITFPDKGNEQPNQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSV 192
             WKKGTKI FPDKGNEQ NQLPADLVFVIDEKPHD++ RD NDLI + +V+LAEA+GGT+V
Sbjct:   219 WKKGTKIKFPDKGNEQVNQLPADLVFVIDEKPHDLFTRDGNDLITSRRVTLAEAIGGTTV 278

Query:   193 SLITLDGRDLNIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQR 252
             ++ TLDGR+L + V +I+SPG+E  +PGEGMPIA+EP N+GDL+IKF+V+FP +LT EQ+
Sbjct:   279 NINTLDGRNLPVGVAEIVSPGYEFVVPGEGMPIAKEPRNKGDLKIKFDVQFPARLTTEQK 338

Query:   253 AGLKRALGG 261
             + LKR L G
Sbjct:   339 SALKRVLAG 347
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA;ISS
GO:0031072 "heat shock protein binding" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
TAIR|locus:2825170 AT1G59725 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2054809 AT2G20560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121368 AT4G28480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179127 AT5G01390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097638 AT3G08910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097880 AT3G47940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2054799 AT2G20550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012743 AT1G10350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205856 AT1G44160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032531001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (339 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00017724001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (538 aa)
  •     0.478
GSVIVG00017185001
SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (482 aa)
  •     0.478
GSVIVG00022013001
SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (667 aa)
  •     0.477
GSVIVG00018506001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (649 aa)
  •     0.471
GSVIVG00001482001
SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (103 aa)
  •     0.471
GSVIVG00022731001
SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (655 aa)
  •     0.469
GSVIVG00018481001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (650 aa)
  •     0.469
GSVIVG00037232001
SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (658 aa)
  •     0.467
GSVIVG00024357001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (652 aa)
  •     0.467
GSVIVG00004141001
SubName- Full=Chromosome undetermined scaffold_611, whole genome shotgun sequence; (468 aa)
  •     0.467

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
cd10747158 cd10747, DnaJ_C, C-terminal substrate binding doma 6e-49
PTZ00037421 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov 3e-30
COG0484371 COG0484, DnaJ, DnaJ-class molecular chaperone with 1e-26
pfam0155681 pfam01556, DnaJ_C, DnaJ C terminal domain 1e-26
TIGR02349354 TIGR02349, DnaJ_bact, chaperone protein DnaJ 5e-19
PRK14291382 PRK14291, PRK14291, chaperone protein DnaJ; Provis 4e-16
PRK14299291 PRK14299, PRK14299, chaperone protein DnaJ; Provis 2e-15
PRK14278378 PRK14278, PRK14278, chaperone protein DnaJ; Provis 5e-15
PRK14281397 PRK14281, PRK14281, chaperone protein DnaJ; Provis 1e-13
PRK14282369 PRK14282, PRK14282, chaperone protein DnaJ; Provis 5e-13
PRK14292371 PRK14292, PRK14292, chaperone protein DnaJ; Provis 9e-13
PRK14289386 PRK14289, PRK14289, chaperone protein DnaJ; Provis 2e-12
PRK14286372 PRK14286, PRK14286, chaperone protein DnaJ; Provis 1e-11
PRK14279392 PRK14279, PRK14279, chaperone protein DnaJ; Provis 4e-11
PRK14294366 PRK14294, PRK14294, chaperone protein DnaJ; Provis 5e-11
PRK14283378 PRK14283, PRK14283, chaperone protein DnaJ; Provis 5e-11
PRK10767371 PRK10767, PRK10767, chaperone protein DnaJ; Provis 1e-10
PRK14277386 PRK14277, PRK14277, chaperone protein DnaJ; Provis 9e-10
PRK14284391 PRK14284, PRK14284, chaperone protein DnaJ; Provis 2e-09
PRK14295389 PRK14295, PRK14295, chaperone protein DnaJ; Provis 4e-09
PRK14293374 PRK14293, PRK14293, chaperone protein DnaJ; Provis 8e-09
PRK14301373 PRK14301, PRK14301, chaperone protein DnaJ; Provis 3e-08
PRK14298377 PRK14298, PRK14298, chaperone protein DnaJ; Provis 5e-08
PRK14296372 PRK14296, PRK14296, chaperone protein DnaJ; Provis 7e-08
PRK14285365 PRK14285, PRK14285, chaperone protein DnaJ; Provis 5e-07
PRK14300372 PRK14300, PRK14300, chaperone protein DnaJ; Provis 2e-06
PRK14297380 PRK14297, PRK14297, chaperone protein DnaJ; Provis 3e-06
PRK10266306 PRK10266, PRK10266, curved DNA-binding protein Cbp 4e-06
PRK14290365 PRK14290, PRK14290, chaperone protein DnaJ; Provis 1e-05
PRK14280376 PRK14280, PRK14280, chaperone protein DnaJ; Provis 2e-05
PRK14276380 PRK14276, PRK14276, chaperone protein DnaJ; Provis 8e-05
PRK14287371 PRK14287, PRK14287, chaperone protein DnaJ; Provis 3e-04
>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40 Back     alignment and domain information 
 Score =  158 bits (402), Expect = 6e-49
 Identities = 59/165 (35%), Positives = 86/165 (52%), Gaps = 8/165 (4%)

Query: 84  PPVESKLPCSLEELYSGSTRKMKISRTVVDANGRQTPESEILTIDVKPGWKKGTKITFPD 143
             +   L  +LEE Y G  +++KI R V      +  E + LT+ +  G   G ++    
Sbjct: 1   ADLRYDLELTLEEAYFGKEKEIKIPRKVT-----RVREKKTLTVKIPAGVDDGQRLRLRG 55

Query: 144 KGNEQPNQLPA-DLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDL 202
           +G+  PN  P  DL  VI  KPH V++RD NDL     +SL EAL G  + + TL G  +
Sbjct: 56  EGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLYCEVPISLTEALLGGEIEVPTLGG-KV 114

Query: 203 NIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKL 247
            + +     PG  L + G+GMP  R  G RGDL ++ +V+FP KL
Sbjct: 115 KLKIPPGTQPGTVLRLKGKGMPRLR-GGGRGDLYVEVKVEFPKKL 158

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain Back     alignment and domain information
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ Back     alignment and domain information
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 261
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 100.0
PTZ00037421 DnaJ_C chaperone protein; Provisional 100.0
PRK14296372 chaperone protein DnaJ; Provisional 100.0
PRK14286372 chaperone protein DnaJ; Provisional 100.0
PRK14288369 chaperone protein DnaJ; Provisional 100.0
PRK14285365 chaperone protein DnaJ; Provisional 100.0
PRK14277386 chaperone protein DnaJ; Provisional 100.0
PRK14297380 chaperone protein DnaJ; Provisional 100.0
PRK14298377 chaperone protein DnaJ; Provisional 100.0
PRK14281397 chaperone protein DnaJ; Provisional 100.0
PRK14278378 chaperone protein DnaJ; Provisional 100.0
PRK14280376 chaperone protein DnaJ; Provisional 100.0
PRK14276380 chaperone protein DnaJ; Provisional 100.0
PRK14279392 chaperone protein DnaJ; Provisional 100.0
PRK14295389 chaperone protein DnaJ; Provisional 100.0
PRK14284391 chaperone protein DnaJ; Provisional 100.0
PRK14301373 chaperone protein DnaJ; Provisional 100.0
PRK14291382 chaperone protein DnaJ; Provisional 100.0
PRK14299291 chaperone protein DnaJ; Provisional 100.0
PRK14287371 chaperone protein DnaJ; Provisional 100.0
PRK14300372 chaperone protein DnaJ; Provisional 100.0
PRK14294366 chaperone protein DnaJ; Provisional 100.0
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 100.0
PRK14290365 chaperone protein DnaJ; Provisional 100.0
PRK14282369 chaperone protein DnaJ; Provisional 100.0
PRK14292371 chaperone protein DnaJ; Provisional 100.0
PRK10767371 chaperone protein DnaJ; Provisional 100.0
PRK10266306 curved DNA-binding protein CbpA; Provisional 100.0
PRK14293374 chaperone protein DnaJ; Provisional 100.0
PRK14283378 chaperone protein DnaJ; Provisional 100.0
PRK14289386 chaperone protein DnaJ; Provisional 100.0
TIGR03835871 termin_org_DnaJ terminal organelle assembly protei 100.0
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 100.0
PF0155681 CTDII: DnaJ C terminal domain; InterPro: IPR002939 99.9
KOG0713336 consensus Molecular chaperone (DnaJ superfamily) [ 99.42
KOG0714306 consensus Molecular chaperone (DnaJ superfamily) [ 99.29
PRK14282369 chaperone protein DnaJ; Provisional 99.17
PF0155681 CTDII: DnaJ C terminal domain; InterPro: IPR002939 99.1
PRK14290365 chaperone protein DnaJ; Provisional 99.1
PRK14299291 chaperone protein DnaJ; Provisional 99.09
PRK14294366 chaperone protein DnaJ; Provisional 99.04
PRK14284391 chaperone protein DnaJ; Provisional 99.02
PRK14285365 chaperone protein DnaJ; Provisional 99.02
PRK10767371 chaperone protein DnaJ; Provisional 98.97
PRK14298377 chaperone protein DnaJ; Provisional 98.97
PRK10266306 curved DNA-binding protein CbpA; Provisional 98.96
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 98.94
PRK14279392 chaperone protein DnaJ; Provisional 98.94
PRK14287371 chaperone protein DnaJ; Provisional 98.92
PRK14300372 chaperone protein DnaJ; Provisional 98.92
PRK14301373 chaperone protein DnaJ; Provisional 98.9
PRK14295389 chaperone protein DnaJ; Provisional 98.88
PRK14291382 chaperone protein DnaJ; Provisional 98.88
PRK14289386 chaperone protein DnaJ; Provisional 98.87
PRK14288369 chaperone protein DnaJ; Provisional 98.87
PRK14293374 chaperone protein DnaJ; Provisional 98.85
PRK14276380 chaperone protein DnaJ; Provisional 98.83
PRK14286372 chaperone protein DnaJ; Provisional 98.81
PRK14281397 chaperone protein DnaJ; Provisional 98.78
PRK14280376 chaperone protein DnaJ; Provisional 98.78
PRK14292371 chaperone protein DnaJ; Provisional 98.77
PRK14297380 chaperone protein DnaJ; Provisional 98.74
PRK14278378 chaperone protein DnaJ; Provisional 98.74
PRK14277386 chaperone protein DnaJ; Provisional 98.67
PRK14283378 chaperone protein DnaJ; Provisional 98.67
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 98.65
PRK14296372 chaperone protein DnaJ; Provisional 98.63
PTZ00037421 DnaJ_C chaperone protein; Provisional 98.61
KOG0715288 consensus Molecular chaperone (DnaJ superfamily) [ 98.49
TIGR03835871 termin_org_DnaJ terminal organelle assembly protei 98.46
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 97.25
COG2214237 CbpA DnaJ-class molecular chaperone [Posttranslati 92.01
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=8.5e-48  Score=351.15  Aligned_cols=180  Identities=28%  Similarity=0.525  Sum_probs=168.0

Q ss_pred             CCCCCCCeEEEEecChhhhhcCcEEEEEEEEEEEc----CCC--------------------------------------
Q 024880           79 VPRKPPPVESKLPCSLEELYSGSTRKMKISRTVVD----ANG--------------------------------------  116 (261)
Q Consensus        79 ~~~kg~di~~~l~lsLee~~~G~~k~i~~~r~~~~----g~G--------------------------------------  116 (261)
                      +++++.||.+.|+|||||||+|++++|.+++.+.|    |+|                                      
T Consensus       111 ~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~  190 (371)
T COG0484         111 RPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCN  190 (371)
T ss_pred             CcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCc
Confidence            47889999999999999999999999999999874    221                                      


Q ss_pred             ----------------ceecccEEEEEEeCCCCCCCceEEeCCCCCCCC-CCCCccEEEEEEEEcCCCccccccceEEEE
Q 024880          117 ----------------RQTPESEILTIDVKPGWKKGTKITFPDKGNEQP-NQLPADLVFVIDEKPHDVYKRDSNDLIVNH  179 (261)
Q Consensus       117 ----------------~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDl~v~i~~~~h~~f~R~G~DL~~~~  179 (261)
                                      .++.+.++|+|+||||+.+|++|+++|+|++.+ ++++|||||+|.+++|+.|.|+|+|||+++
T Consensus       191 G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~  270 (371)
T COG0484         191 GTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEV  270 (371)
T ss_pred             cceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEecc
Confidence                            168899999999999999999999999999987 568899999999999999999999999999


Q ss_pred             EecHHHHhCCCeEEEeccCCcEEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHh
Q 024880          180 KVSLAEALGGTSVSLITLDGRDLNIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGLKRAL  259 (261)
Q Consensus       180 ~I~l~~Al~G~~~~i~tldG~~l~v~i~~~~~pg~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~l~~~~~~~l~~~l  259 (261)
                      +|++.+|++|++++||||||+ ++|+||+++|+|+++||+|+|||..++ ..+|||||+++|++|++|+++|+++|+++.
T Consensus       271 ~Is~~~AalG~~i~vptl~g~-~~l~ip~Gtq~G~~~rl~gkG~p~~~~-~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~  348 (371)
T COG0484         271 PISFTEAALGGEIEVPTLDGR-VKLKIPAGTQTGEVFRLRGKGMPKLRS-GGRGDLYVRVKVETPKNLSDEQKELLEEFA  348 (371)
T ss_pred             ccCHHHHhcCCEEEEEecCCC-EEEecCCCCccCcEEEEcCCCccccCC-CCcCCEEEEEEEEcCCCCCHHHHHHHHHHH
Confidence            999999999999999999999 999999999999999999999998765 667999999999999999999999999986


Q ss_pred             C
Q 024880          260 G  260 (261)
Q Consensus       260 ~  260 (261)
                      .
T Consensus       349 ~  349 (371)
T COG0484         349 K  349 (371)
T ss_pred             H
Confidence            4

>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress Back     alignment and domain information
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
3agz_A190 Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi 2e-44
2qld_A183 Human Hsp40 Hdj1 Length = 183 2e-44
3agx_A181 Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi 2e-44
2q2g_A180 Crystal Structure Of Dimerization Domain Of Hsp40 F 9e-31
2b26_A173 The Crystal Structure Of The Protein Complex Of Yea 3e-25
1c3g_A170 S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 1 3e-25
1nlt_A248 The Crystal Structure Of Hsp40 Ydj1 Length = 248 2e-19
1xao_A121 Hsp40-Ydj1 Dimerization Domain Length = 121 1e-07
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 Length = 190 Back     alignment and structure 
Iteration: 1

 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/177 (48%), Positives = 124/177 (70%), Gaps = 1/177 (0%)
Query: 84  PPVESKLPCSLEELYSGSTRKMKISRTVVDANGRQT-PESEILTIDVKPGWKKGTKITFP 142
           PPV   L  SLEE+YSG T+KMKIS   ++ +G+    E +ILTI+VK GWK+GTKITFP
Sbjct: 12  PPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFP 71
Query: 143 DKGNEQPNQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDL 202
            +G++  N +PAD+VFV+ +KPH+++KRD +D+I   ++SL EAL G +V++ TLDGR +
Sbjct: 72  KEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTI 131
Query: 203 NIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGLKRAL 259
            +   D+I PG    +PGEG+P+ + P  RGDL I+FEV FP ++    R  L++ L
Sbjct: 132 PVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 188
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1 Length = 183 Back     alignment and structure
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Length = 181 Back     alignment and structure
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From Cryptosporidium Parvum, Cgd2_1800 Length = 180 Back     alignment and structure
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast Hsp40 Sis1 And Hsp70 Ssa1 Length = 173 Back     alignment and structure
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 170 Back     alignment and structure
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248 Back     alignment and structure
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain Length = 121 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 1e-93
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 2e-93
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 2e-85
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 5e-43
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 3e-04
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 3e-34
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 1e-29
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181 Back     alignment and structure
 Score =  272 bits (698), Expect = 1e-93
 Identities = 86/177 (48%), Positives = 124/177 (70%), Gaps = 1/177 (0%)

Query: 84  PPVESKLPCSLEELYSGSTRKMKISRTVVDANGRQT-PESEILTIDVKPGWKKGTKITFP 142
           PPV   L  SLEE+YSG T+KMKIS   ++ +G+    E +ILTI+VK GWK+GTKITFP
Sbjct: 3   PPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFP 62

Query: 143 DKGNEQPNQLPADLVFVIDEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDL 202
            +G++  N +PAD+VFV+ +KPH+++KRD +D+I   ++SL EAL G +V++ TLDGR +
Sbjct: 63  KEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTI 122

Query: 203 NIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTKLTPEQRAGLKRAL 259
            +   D+I PG    +PGEG+P+ + P  RGDL I+FEV FP ++    R  L++ L
Sbjct: 123 PVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 179
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180 Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170 Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248 Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248 Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query261
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 100.0
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 100.0
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 100.0
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 100.0
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 100.0
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 99.95
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 99.95
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 99.31
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 99.23
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 98.95
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 98.94
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 98.93
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 98.88
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 98.78
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 96.11
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Back     alignment and structure
Probab=100.00  E-value=2.9e-51  Score=344.66  Aligned_cols=178  Identities=39%  Similarity=0.738  Sum_probs=167.7

Q ss_pred             CCCCeEEEEecChhhhhcCcEEEEEEEEEEEcCCCceecccEEEEEEeCCCCCCCceEEeCCCCCC-CCCCCCccEEEEE
Q 024880           82 KPPPVESKLPCSLEELYSGSTRKMKISRTVVDANGRQTPESEILTIDVKPGWKKGTKITFPDKGNE-QPNQLPADLVFVI  160 (261)
Q Consensus        82 kg~di~~~l~lsLee~~~G~~k~i~~~r~~~~g~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~-~~~~~~GDl~v~i  160 (261)
                      +++|++++|+|||||||+||++++++.+.+.|++| ++.+.++++|+|||||++|++|+|+|+|++ .+++.+|||+|+|
T Consensus         2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g-~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i   80 (180)
T 2q2g_A            2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHK-VRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLII   80 (180)
T ss_dssp             --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTE-EEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEE
T ss_pred             CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCc-eEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEE
Confidence            37899999999999999999999999999999775 677889999999999999999999999999 6778999999999


Q ss_pred             EEEcCCCccccccceEEEEEecHHHHhCCCeEEEeccCCcEEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCCEEEEEE
Q 024880          161 DEKPHDVYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDLNIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFE  240 (261)
Q Consensus       161 ~~~~h~~f~R~G~DL~~~~~I~l~~Al~G~~~~i~tldG~~l~v~i~~~~~pg~~~~i~g~GmP~~~~~~~~GDL~I~~~  240 (261)
                      ++++|+.|+|+|+||+++++|+|++|+||++++|+||||+.++|++|++++||+++||+|+|||..++++.+|||||+|+
T Consensus        81 ~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~  160 (180)
T 2q2g_A           81 QTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFD  160 (180)
T ss_dssp             EECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEE
T ss_pred             EEEecccEEEcCCEEEEEEEcCHHHHhCCCEEEeeCCCCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEE
Confidence            99999999999999999999999999999999999999988999999999999999999999998766567899999999


Q ss_pred             EECCCCCCHHHHHHHHHHhC
Q 024880          241 VKFPTKLTPEQRAGLKRALG  260 (261)
Q Consensus       241 V~~P~~l~~~~~~~l~~~l~  260 (261)
                      |+||++||++|+++|+++||
T Consensus       161 V~~P~~Ls~~q~~~l~~~~p  180 (180)
T 2q2g_A          161 ICFPKSLTPEQKKLIKEALD  180 (180)
T ss_dssp             EECCSCCCHHHHHHHHHHC-
T ss_pred             EECCCCCCHHHHHHHHHhcC
Confidence            99999999999999999986
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Back     alignment and structure
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Back     alignment and structure
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 261
d1c3ga290 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba 5e-25
d1c3ga180 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba 2e-19
d1nlta280 b.4.1.1 (A:258-337) Mitochondrial protein import p 1e-17
d1nlta174 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei 5e-15
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90 Back     information, alignment and structure

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.1 bits (231), Expect = 5e-25
 Identities = 31/88 (35%), Positives = 50/88 (56%)

Query: 168 YKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDLNIAVTDIISPGFELGIPGEGMPIAR 227
           +KRD +DLI    +S  E+L G S ++ T+DGR L ++    + P      PG+GMP  +
Sbjct: 2   FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPK 61

Query: 228 EPGNRGDLRIKFEVKFPTKLTPEQRAGL 255
            P  RG+L +K++V +P  L   Q+  +
Sbjct: 62  NPSQRGNLIVKYKVDYPISLNDAQKRAI 89
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 Back     information, alignment and structure
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query261
d1c3ga290 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.95
d1nlta280 Mitochondrial protein import protein mas5 (Hsp40, 99.89
d1nlta174 Mitochondrial protein import protein mas5 (Hsp40, 99.83
d1c3ga180 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.81
d1nlta174 Mitochondrial protein import protein mas5 (Hsp40, 99.45
d1c3ga290 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.22
d1nlta280 Mitochondrial protein import protein mas5 (Hsp40, 99.1
d1c3ga180 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 98.98
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.6e-28  Score=181.91  Aligned_cols=90  Identities=34%  Similarity=0.655  Sum_probs=86.2

Q ss_pred             CccccccceEEEEEecHHHHhCCCeEEEeccCCcEEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEECCCC
Q 024880          167 VYKRDSNDLIVNHKVSLAEALGGTSVSLITLDGRDLNIAVTDIISPGFELGIPGEGMPIAREPGNRGDLRIKFEVKFPTK  246 (261)
Q Consensus       167 ~f~R~G~DL~~~~~I~l~~Al~G~~~~i~tldG~~l~v~i~~~~~pg~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~  246 (261)
                      .|+|+|+||+++++|+++||++|++++|+|+||+.+.|++|++++||++++|+|+|||..++++.+|||||+|+|.+|++
T Consensus         1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~   80 (90)
T d1c3ga2           1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPIS   80 (90)
T ss_dssp             SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSS
T ss_pred             CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCC
Confidence            48999999999999999999999999999999999999999999999999999999999877778999999999999999


Q ss_pred             CCHHHHHHHH
Q 024880          247 LTPEQRAGLK  256 (261)
Q Consensus       247 l~~~~~~~l~  256 (261)
                      ||++|+++|+
T Consensus        81 ls~~qk~~lE   90 (90)
T d1c3ga2          81 LNDAQKRAID   90 (90)
T ss_dssp             CCTTHHHHTC
T ss_pred             CCHHHHHhhC
Confidence            9999999874
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure