Citrus Sinensis ID: 024890

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSRICCVWES
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccccccEEEEEEcccccccccccccEEEccccccccHHHHHHccccccccccccccccccccccccccEEEEcccccccccccccccHHHHHcHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccHHHcccccc
Coil and Loop (DISEMBL)
MGLASVIysgvqaphkfdslllrfsptstsqvpkltsllhfcnsqaptfysvshnrrgqyspllacakgteqeddlstsevgrsssqshendntshspttvddaerqiegresytsSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFklfaseeddtdlsdnfIVKTcqrfipvtsriccvwes
Flexible Loop (DISEMBL)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVgrsssqshendntshspttvddaerqIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTcqrfipvtsriccvwes
Low Complexity Region (SEG)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSRICCVWES
Disordered region (IsUnstruct)
*****VIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLAC**************************************************SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSRICCVW**
Disordered Region (DISOPRED)
***ASVIYSGVQAPHKFDSLLLRFS**STSQVPKLTSLLHFCNSQAP***********************EQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFA***********FIVKTCQRFIPVTSRI**V***
Disordered Region (DISEMBL)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAK************************************ERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSRICCVWES
Disordered Region (DISPRO)
*GLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTE*****STSEVGRS*********TSHSPTTVDD*E*QIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSRICCVW**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSRICCVWES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
P96554	319	Uncharacterized membrane	yes	no	0.501	0.410	0.389	6e-21
Q52356	346	Tellurium resistance prot	N/A	no	0.544	0.410	0.380	9e-19
Q8Z3L5	322	Inner membrane protein al	N/A	no	0.432	0.350	0.380	6e-17
Q8ZLX2	322	Inner membrane protein al	yes	no	0.432	0.350	0.380	6e-17
P42601	321	Inner membrane protein al	N/A	no	0.432	0.352	0.362	6e-17
P18780	346	Tellurium resistance prot	N/A	no	0.498	0.375	0.374	7e-17
Q83Q35	320	Inner membrane protein al	yes	no	0.432	0.353	0.362	7e-17
Q8XAJ0	321	Inner membrane protein al	N/A	no	0.432	0.352	0.362	7e-17
Q8FDE1	321	Inner membrane protein al	yes	no	0.432	0.352	0.362	7e-17
Q92GA4	301	Uncharacterized membrane	yes	no	0.536	0.465	0.328	1e-16

>sp|P96554|Y319_MYXXA Uncharacterized membrane protein STKORF319 OS=Myxococcus xanthus PE=3 SV=1

 Score =  101 bits (251), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 76/131 (58%)

Query: 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNR 181
           A  VS A+ FG GV +  G     +F  GY++E+SLSVDN+FVFV+IF   ++P +YQ+R
Sbjct: 48  ALWVSLALVFGAGVWWKFGPEPGLQFITGYLIEKSLSVDNIFVFVVIFSALRIPALYQHR 107

Query: 182 VLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFI 241
           VL +GI  A+  R  +I  G A L RF  +  V  G L+ +  KLF     + +  +  +
Sbjct: 108 VLFWGILSALALRAIMIFAGVAMLARFHWLIYVFGGFLIITGVKLFLQRNKEDNPEEGAL 167

Query: 242 VKTCQRFIPVT 252
           ++  +R IP T
Sbjct: 168 MRLARRTIPST 178

Myxococcus xanthus (taxid: 34)

>sp|Q52356|TERC_SERMA Tellurium resistance protein TerC OS=Serratia marcescens GN=terC PE=3 SV=1

 Score = 94.0 bits (232), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 88/155 (56%), Gaps = 13/155 (8%)

Query: 111 RESYTSSVKTVA----FCVSTAVAFGLGVGFI---EGASKASEFFAGYILEQSLSVDNLF 163
           R+    S+K+ A    F V  A+AF    GF+    GA  AS F  GY LE+ LSVDNLF
Sbjct: 32  RDDKPISLKSAALWSVFWVVVAMAFA---GFLYIHHGAEVASLFVTGYALEKVLSVDNLF 88

Query: 164 VFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSS 223
           V + IF +F VP  Y++RVL +GI GAIVFR   + +GT+ L     V +V A I+ +++
Sbjct: 89  VMMAIFSWFAVPDRYRHRVLYWGIIGAIVFRGIFVAIGTSLLSLGPYVEVVFAIIVAWTA 148

Query: 224 FKLFASEEDDTDLSD---NFIVKTCQRFIPVTSRI 255
             +  S +DD ++ D   +   +  +RF P+  ++
Sbjct: 149 VMMLKSGDDDDEIEDYSQHLAYRMVKRFFPIWPKL 183

Could conceivably alter the intracellular level of tellurium in a manner leading to resistance. Alternatively its presence in the membrane may provide a barrier to entry of the tellurium ions.

Serratia marcescens (taxid: 615)

>sp|Q8Z3L5|ALX_SALTI Inner membrane protein alx OS=Salmonella typhi GN=alx PE=3 SV=1

 Score = 88.2 bits (217), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 71/113 (62%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  GT
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPPALQRRVLVYGVLGAIVLRTIMIFAGT 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSRI 255
             + +FE +  V    LLF+  K+  ++ED++ + +  +V+  +  + +T  I
Sbjct: 135 WLITQFEWLLYVFGAFLLFTGVKMALAKEDESGIGEKPMVRWLRGHLRMTDTI 187

Salmonella typhi (taxid: 90370)

>sp|Q8ZLX2|ALX_SALTY Inner membrane protein alx OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=alx PE=3 SV=1

 Score = 87.8 bits (216), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 71/113 (62%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  GT
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPPALQRRVLVYGVLGAIVLRTIMIFAGT 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSRI 255
             + +FE +  V    LLF+  K+  ++ED++ + +  +V+  +  + +T  I
Sbjct: 135 WLITQFEWLLYVFGAFLLFTGVKMALAKEDESGIGEKPMVRWLRGHLRMTDTI 187

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|P42601|ALX_ECOLI Inner membrane protein alx OS=Escherichia coli (strain K12) GN=alx PE=1 SV=2

 Score = 87.8 bits (216), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 70/113 (61%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSRI 255
             + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T  I
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTI 187

Escherichia coli (strain K12) (taxid: 83333)

>sp|P18780|TERC_ALCSP Tellurium resistance protein TerC OS=Alcaligenes sp. GN=terC PE=3 SV=1

 Score = 87.8 bits (216), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 77/139 (55%), Gaps = 9/139 (6%)

Query: 123 FCVSTAVAFGLGVGFI---EGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
           F V  A+AF    GF+    GA  AS F  GY LE+ LSVDNLFV + IF +F VP  Y+
Sbjct: 48  FWVVVAMAFA---GFLYVHHGAEVASLFVTGYALEKVLSVDNLFVMMAIFSWFSVPDRYR 104

Query: 180 NRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSD- 238
           +R L +GI GAIVFR   + +GT  L     V L+ A ++ +++  +     DD ++ D 
Sbjct: 105 HRGLYWGIIGAIVFRGIFVAIGTGLLSLGPYVELIFAVVVAWTAVMMLKGGGDDDEIEDY 164

Query: 239 --NFIVKTCQRFIPVTSRI 255
             +   +  +RF P+  ++
Sbjct: 165 SQHLAYRLVKRFFPIWPKL 183

Could conceivably alter the intracellular level of tellurium in a manner leading to resistance. Alternatively its presence in the membrane may provide a barrier to entry of the tellurium ions.

Alcaligenes sp (taxid: 512)

>sp|Q83Q35|ALX_SHIFL Inner membrane protein alx OS=Shigella flexneri GN=alx PE=3 SV=1

 Score = 87.8 bits (216), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 70/113 (61%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSRI 255
             + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T  I
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTI 187

Shigella flexneri (taxid: 623)

>sp|Q8XAJ0|ALX_ECO57 Inner membrane protein alx OS=Escherichia coli O157:H7 GN=alx PE=3 SV=1

 Score = 87.8 bits (216), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 70/113 (61%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSRI 255
             + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T  I
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTI 187

Escherichia coli O157:H7 (taxid: 83334)

>sp|Q8FDE1|ALX_ECOL6 Inner membrane protein alx OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=alx PE=3 SV=1

 Score = 87.8 bits (216), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 70/113 (61%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSRI 255
             + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T  I
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTI 187

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|Q92GA4|Y1219_RICCN Uncharacterized membrane protein RC1219 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC1219 PE=3 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 82/140 (58%)

Query: 113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYF 172
           S+  SV    F +  A  FG+ V +  GA  A E++  +++E+++S+DN+FV  +IF++F
Sbjct: 29  SFKESVLFSLFYLVIACLFGIYVYYNTGADHAREYYTCFLIEKAMSLDNIFVISIIFQFF 88

Query: 173 KVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEED 232
           K+P  YQ+RVL +GI G I+FR  +I  G   + +F  +  + A IL+ +  K F     
Sbjct: 89  KIPWQYQHRVLFFGIIGVIIFRAVMIYGGIILINKFAWLLYIFAVILIATGIKTFYVSHK 148

Query: 233 DTDLSDNFIVKTCQRFIPVT 252
             D+ +++I K+  + + +T
Sbjct: 149 TFDIQNSYIYKSIIKNLNIT 168

Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
224068600	372	predicted protein [Populus trichocarpa]	0.919	0.645	0.649	1e-82
255568464	327	Protein alx, putative [Ricinus communis]	0.846	0.675	0.605	1e-71
356536907	363	PREDICTED: uncharacterized membrane prot	0.888	0.639	0.602	9e-69
388522347	261	unknown [Medicago truncatula]	0.881	0.881	0.586	8e-68
449448697	362	PREDICTED: uncharacterized membrane prot	0.854	0.616	0.561	2e-67
225439789	389	PREDICTED: uncharacterized membrane prot	0.923	0.619	0.582	3e-67
297807259	374	PDE149 [Arabidopsis lyrata subsp. lyrata	0.919	0.641	0.596	9e-67
21592518	384	transmembrane transport protein-like pro	0.938	0.638	0.573	1e-65
18416778	384	TerC integral membrane domain-containing	0.938	0.638	0.573	1e-65
356548192	352	PREDICTED: uncharacterized membrane prot	0.846	0.627	0.582	6e-65

>gi|224068600|ref|XP_002326155.1| predicted protein [Populus trichocarpa] gi|222833348|gb|EEE71825.1| predicted protein [Populus trichocarpa]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 167/257 (64%), Positives = 198/257 (77%), Gaps = 17/257 (6%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQY 60
           M L SVI++    P     L L+ SP +       T  + F +   P+F SV   RRGQ 
Sbjct: 1   MRLTSVIHNNSIIP-----LSLKVSPAN------YTYSVQFSHPHFPSFNSVISKRRGQN 49

Query: 61  SPLLACAKGTEQEDDLSTSEVGRSSSQSHENDN---TSHSPTTVDDAERQIEGRESYTSS 117
           SP+ +CA+GTEQEDDLS SE  ++SSQ+ ++ +   TS +P +VD AE +++G  +Y +S
Sbjct: 50  SPI-SCARGTEQEDDLSPSEAVKTSSQTRDDVSKFITSTAPPSVDKAEEKVKG--NYKTS 106

Query: 118 VKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVM 177
           +KTVA CV TAVAFG G+G  +G  KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVP+M
Sbjct: 107 IKTVALCVCTAVAFGFGIGLKDGVGKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPLM 166

Query: 178 YQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLS 237
           YQNRVLSYGIAGAI+FRLSLILLGTATLQRFEAVNL LA ILL+SSFKLFA+EEDD+DLS
Sbjct: 167 YQNRVLSYGIAGAIIFRLSLILLGTATLQRFEAVNLFLATILLYSSFKLFATEEDDSDLS 226

Query: 238 DNFIVKTCQRFIPVTSR 254
           DNFIVKTCQRFIPVTS 
Sbjct: 227 DNFIVKTCQRFIPVTSN 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568464|ref|XP_002525206.1| Protein alx, putative [Ricinus communis] gi|223535503|gb|EEF37172.1| Protein alx, putative [Ricinus communis]

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 155/256 (60%), Positives = 181/256 (70%), Gaps = 35/256 (13%)

Query: 1   MGLASVIYS--GVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRG 58
           M LASVI++   +Q P    SL LR SP      PK +   HF         S+ H  R 
Sbjct: 1   MSLASVIHTINTIQPPL---SLTLRVSP------PKCSPRFHFSPPHFTPLLSLPH--RL 49

Query: 59  QYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSV 118
            Y   +AC+ G +Q+ DLSTSE                +P +VD  E       +YT+SV
Sbjct: 50  PYP--IACSGGAQQDPDLSTSE----------------APHSVDKPE----AHGNYTTSV 87

Query: 119 KTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMY 178
           KTVAFCV  AVAFG+G+GF +G  KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVP+MY
Sbjct: 88  KTVAFCVCAAVAFGIGIGFKDGVGKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPLMY 147

Query: 179 QNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSD 238
           QNRVLSYGIAGAI+FRLSLILLG+ATLQRFEAVNL LA ILL+SS KLFASE+D+TDLSD
Sbjct: 148 QNRVLSYGIAGAIIFRLSLILLGSATLQRFEAVNLFLAAILLYSSVKLFASEDDETDLSD 207

Query: 239 NFIVKTCQRFIPVTSR 254
           NFIVKTCQ++IP+TS+
Sbjct: 208 NFIVKTCQKYIPITSK 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536907|ref|XP_003536974.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Glycine max]

 Score =  266 bits (679), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 153/254 (60%), Positives = 183/254 (72%), Gaps = 22/254 (8%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQY 60
           MGLASV+++GV+ P   + +    +P      P   S LH   S   +F SV H R    
Sbjct: 1   MGLASVVHNGVRIPFNLEHI---HTP------PFRCSALHHPIS---SFCSVYHYRPPHR 48

Query: 61  SPLLACAKGTEQEDDLSTSEVGRSSSQSHEN-DNTSHSPTTVDDAERQIEGRESYTSSVK 119
            PLL C++     +    SEV R S+Q +++      SPT      ++  G E Y+SSV+
Sbjct: 49  FPLL-CSRRIGHHN--YASEVKRISAQQNDDIGKVEKSPT------QESLGNEDYSSSVR 99

Query: 120 TVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
           TVA  V TAVAFG+G+GF EG  KASEFFAGYILEQSLSVDNLFVFVLIF YFKVPV YQ
Sbjct: 100 TVALWVCTAVAFGVGLGFKEGFDKASEFFAGYILEQSLSVDNLFVFVLIFNYFKVPVAYQ 159

Query: 180 NRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDN 239
           NRVLSYGIAGA+VFRL+LIL+GTATLQRFEAVNL+LA ILLFSSFKLFASEED++DLSDN
Sbjct: 160 NRVLSYGIAGAVVFRLTLILIGTATLQRFEAVNLLLAAILLFSSFKLFASEEDESDLSDN 219

Query: 240 FIVKTCQRFIPVTS 253
           F+VKTCQ+FIPVT+
Sbjct: 220 FVVKTCQKFIPVTT 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522347|gb|AFK49235.1| unknown [Medicago truncatula]

 Score =  263 bits (671), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 149/254 (58%), Positives = 178/254 (70%), Gaps = 24/254 (9%)

Query: 1   MGLASVIYSGVQAP-HKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQ 59
           M LASV+++G+Q P +  D + +R S + TS        L F +    +F SV H  R  
Sbjct: 1   MSLASVVHNGIQTPLNHTDLIRIRASHSKTST-------LQFLHRPISSFSSVYHLHRPL 53

Query: 60  YSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVK 119
             PL  C+K   Q     TS+V R ++Q              DD     E  ES +S+V+
Sbjct: 54  RLPL-PCSKPIRQVHPFHTSDVKRITAQR-------------DDEISSTE--ESQSSAVR 97

Query: 120 TVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
           TVA  V  AVAFG+GVGF EG  KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV+YQ
Sbjct: 98  TVALWVCAAVAFGVGVGFTEGYEKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVLYQ 157

Query: 180 NRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDN 239
           NRVLSYGIAGA+VFRL +ILLGTAT+QRFEAVNL+LA ILLFSSFKLFASEE+++DLSDN
Sbjct: 158 NRVLSYGIAGAVVFRLIIILLGTATIQRFEAVNLLLAAILLFSSFKLFASEEEESDLSDN 217

Query: 240 FIVKTCQRFIPVTS 253
           F+VKTCQ+ IPVT+
Sbjct: 218 FLVKTCQKLIPVTT 231

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448697|ref|XP_004142102.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Cucumis sativus]

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 146/260 (56%), Positives = 175/260 (67%), Gaps = 37/260 (14%)

Query: 3   LASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHF--------CNSQAPTFYSVSH 54
           +AS+I++G+Q   K DS             PK++S LHF         ++  P F  V  
Sbjct: 1   MASIIHNGLQISSKLDS-----------PWPKVSSHLHFHPRAWVEAVHNHVPQFSPVIL 49

Query: 55  NRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESY 114
           N R     L+ C+   E+E D ST+E  R+SS                     IEG ES 
Sbjct: 50  NCRPSPRSLVRCSSRIEREGDPSTAEANRTSS-----------------VRGTIEGSESK 92

Query: 115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKV 174
            SS++ VA CV+TAVAFG+GVG  +G  KASEFFAGY+LEQSLSVDNLFVFVLIFKYFKV
Sbjct: 93  VSSIRNVALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKV 152

Query: 175 PVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFAS-EEDD 233
           P  YQNRVL+YGI+GAIVFRL++ILLG ATLQRFEAVNL+LA ILLFSSF+LFAS EEDD
Sbjct: 153 PTEYQNRVLTYGISGAIVFRLTIILLGAATLQRFEAVNLLLAAILLFSSFQLFASNEEDD 212

Query: 234 TDLSDNFIVKTCQRFIPVTS 253
            DLSDNF+VKTCQ+ IPVT+
Sbjct: 213 GDLSDNFVVKTCQQLIPVTA 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439789|ref|XP_002276398.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Vitis vinifera]

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 152/261 (58%), Positives = 181/261 (69%), Gaps = 20/261 (7%)

Query: 7   IYSGVQAPHKFDSLLLRFSPTSTS------QVPKLTSLLHFCNSQA--PTFYSVS--HNR 56
           IY GV+ P KFDS       TSTS      Q  K T+       +   P F  +S   N 
Sbjct: 7   IYYGVRTPLKFDS-------TSTSTRVFSFQALKWTTTRSTTRLRFTFPHFPPLSAVRNA 59

Query: 57  RGQYSPLLACAKGTEQ-EDDLSTSEVGRSSSQSHENDNTS--HSPTTVDDAERQIEGRES 113
            G     LAC++ T+Q ED LSTSE  R S+      N +  H+  +  + E   +G E+
Sbjct: 60  GGARCSPLACSRRTQQGEDGLSTSEGERISAPYDGLSNVAVPHNCISAGNPEEITQGPET 119

Query: 114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFK 173
           Y SS++TVA  V  AV FG+GVGF +G  KASEFFAGY+LEQSLSVDNLFVFVLIFKYF+
Sbjct: 120 YVSSIRTVALWVCMAVIFGVGVGFKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFQ 179

Query: 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDD 233
           VP MYQ RVLSYGIAGAI+FRLSLILLGTATLQRFEAVNL+ A ILLFSSFKLFA++ED+
Sbjct: 180 VPTMYQGRVLSYGIAGAIIFRLSLILLGTATLQRFEAVNLLFAAILLFSSFKLFAADEDE 239

Query: 234 TDLSDNFIVKTCQRFIPVTSR 254
           TDLS+NF+VKTCQ+FIPVT+ 
Sbjct: 240 TDLSNNFVVKTCQKFIPVTAN 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807259|ref|XP_002871513.1| PDE149 [Arabidopsis lyrata subsp. lyrata] gi|297317350|gb|EFH47772.1| PDE149 [Arabidopsis lyrata subsp. lyrata]

 Score =  259 bits (662), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 152/255 (59%), Positives = 181/255 (70%), Gaps = 15/255 (5%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSH-NRRGQ 59
           M LASVI+ G+ AP K D + L         +P +             F  VS  NRR  
Sbjct: 1   MSLASVIHHGIFAPAKSDRIFL--------TIPVVPPDFRARGWTESRFSLVSAANRRLS 52

Query: 60  YSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE-RQIEGRESYTSSV 118
           + P +AC++  +QEDD  + E+       H+ND  + S ++VD       +  E+Y +S 
Sbjct: 53  HLPPIACSREIDQEDDKESREL-----LPHKNDENASSSSSVDSGGLNDYQQEETYKTSF 107

Query: 119 KTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMY 178
           KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFKVP MY
Sbjct: 108 KTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKVPPMY 167

Query: 179 QNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSD 238
           QN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDDTDLSD
Sbjct: 168 QNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDDTDLSD 227

Query: 239 NFIVKTCQRFIPVTS 253
           NFIVKTCQRFIPVTS
Sbjct: 228 NFIVKTCQRFIPVTS 242

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592518|gb|AAM64468.1| transmembrane transport protein-like protein [Arabidopsis thaliana]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 149/260 (57%), Positives = 183/260 (70%), Gaps = 15/260 (5%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLR---FSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRR 57
           M LASVI+ G+  P K D + L    F P   ++    +      N   P+  S + NRR
Sbjct: 1   MSLASVIHHGILPPAKSDRIFLTIPVFPPDFRARGWTKSPFSLLIN---PSLASAA-NRR 56

Query: 58  GQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE----RQIEGRES 113
             + P +AC++G +QED+   S         H+ND  + +  +    +    +  +  E+
Sbjct: 57  LSHLPPIACSRGIDQEDEEKESR----ELLPHKNDENATTSRSSSSVDSGGLKDYQQEET 112

Query: 114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFK 173
           Y +S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFK
Sbjct: 113 YKTSFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFK 172

Query: 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDD 233
           VP+MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDD
Sbjct: 173 VPLMYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDD 232

Query: 234 TDLSDNFIVKTCQRFIPVTS 253
           TDLSDNFIVKTCQRFIPVTS
Sbjct: 233 TDLSDNFIVKTCQRFIPVTS 252

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416778|ref|NP_568257.1| TerC integral membrane domain-containing protein [Arabidopsis thaliana] gi|332004383|gb|AED91766.1| TerC integral membrane domain-containing protein [Arabidopsis thaliana]

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 149/260 (57%), Positives = 183/260 (70%), Gaps = 15/260 (5%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLR---FSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRR 57
           M LASVI+ G+  P K D + L    F P   ++    +      N   P+  S + NRR
Sbjct: 1   MSLASVIHHGILPPAKSDRIFLTIPVFPPDFRARGWTKSPFSLLIN---PSLASAA-NRR 56

Query: 58  GQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE----RQIEGRES 113
             + P +AC++G +QED+   S         H+ND  + +  +    +    +  +  E+
Sbjct: 57  LSHLPPIACSRGIDQEDEEKESR----ELLPHKNDENATTSRSSSSVDSGGLKDYQQEET 112

Query: 114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFK 173
           Y +S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFK
Sbjct: 113 YKTSFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFK 172

Query: 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDD 233
           VP+MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDD
Sbjct: 173 VPLMYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDD 232

Query: 234 TDLSDNFIVKTCQRFIPVTS 253
           TDLSDNFIVKTCQRFIPVTS
Sbjct: 233 TDLSDNFIVKTCQRFIPVTS 252

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548192|ref|XP_003542487.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Glycine max]

 Score =  253 bits (646), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 148/254 (58%), Positives = 178/254 (70%), Gaps = 33/254 (12%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQY 60
           MGLASV++  + AP                  P   S+LH   S   +F SV H R  + 
Sbjct: 1   MGLASVVH--IHAP------------------PFRCSVLHHPIS---SFCSVYHYRPPRR 37

Query: 61  SPLLACAKGTEQEDDLSTSEVGRSSSQSHEN-DNTSHSPTTVDDAERQIEGRESYTSSVK 119
            PLL C++    ++    SEV R S+Q +++      SPT      ++  G E Y SSV+
Sbjct: 38  FPLL-CSRRIGHDN--YASEVKRISAQQNDDIGKVEKSPT------QESLGNEGYNSSVR 88

Query: 120 TVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
           TVA  V TAVAFG+G+GF EG  KASEFFAGYILEQSLSVDNLFVFVLIF YFKVPV YQ
Sbjct: 89  TVALWVCTAVAFGVGLGFKEGFDKASEFFAGYILEQSLSVDNLFVFVLIFNYFKVPVTYQ 148

Query: 180 NRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDN 239
           NRVLSYGIAGA+VFRL++IL+GTATLQRFEAVNL+LA ILL+SS KLFASEED++DLSDN
Sbjct: 149 NRVLSYGIAGAVVFRLTIILIGTATLQRFEAVNLLLAAILLYSSSKLFASEEDESDLSDN 208

Query: 240 FIVKTCQRFIPVTS 253
           F+VKTCQ+FIPVT+
Sbjct: 209 FVVKTCQKFIPVTT 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2177053	384	PDE149 "PIGMENT DEFECTIVE 149"	0.950	0.645	0.595	1.4e-69
UNIPROTKB|Q74EV4	311	GSU0855 "Membrane protein, Ter	0.555	0.466	0.409	9.7e-25
TIGR_CMR|GSU_0855	311	GSU_0855 "membrane protein, Te	0.555	0.466	0.409	9.7e-25
UNIPROTKB|Q74CV1	314	GSU1570 "Membrane protein, Ter	0.563	0.468	0.397	1.4e-23
TIGR_CMR|GSU_1570	314	GSU_1570 "membrane protein, Te	0.563	0.468	0.397	1.4e-23
UNIPROTKB|Q8EG61	325	SO_1747 "Tellurium ion resista	0.509	0.409	0.384	3.5e-20
TIGR_CMR|SO_1747	325	SO_1747 "membrane protein, put	0.509	0.409	0.384	3.5e-20
UNIPROTKB|Q8E9J8	325	SO_4279 "Tellurium ion resista	0.509	0.409	0.384	4.4e-20
TIGR_CMR|SO_4279	325	SO_4279 "membrane protein, put	0.509	0.409	0.384	4.4e-20
UNIPROTKB|P42601	321	alx "predicted membrane-bound	0.432	0.352	0.362	5.8e-18

TAIR|locus:2177053 PDE149 "PIGMENT DEFECTIVE 149" [Arabidopsis thaliana (taxid:3702)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 153/257 (59%), Positives = 186/257 (72%)

Query:     1 MGLASVIYSGVQAPHKFDSLLLR---FSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRR 57
             M LASVI+ G+  P K D + L    F P   ++    +      N   P+  S + NRR
Sbjct:     1 MSLASVIHHGILPPAKSDRIFLTIPVFPPDFRARGWTKSPFSLLIN---PSLASAA-NRR 56

Query:    58 GQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE-RQIEGRESYTS 116
               + P +AC++G +QED+   S       ++ EN  TS S ++VD    +  +  E+Y +
Sbjct:    57 LSHLPPIACSRGIDQEDEEKESRE-LLPHKNDENATTSRSSSSVDSGGLKDYQQEETYKT 115

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFKVP+
Sbjct:   116 SFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKVPL 175

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDL 236
             MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDDTDL
Sbjct:   176 MYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDDTDL 235

Query:   237 SDNFIVKTCQRFIPVTS 253
             SDNFIVKTCQRFIPVTS
Sbjct:   236 SDNFIVKTCQRFIPVTS 252

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

UNIPROTKB|Q74EV4 GSU0855 "Membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 61/149 (40%), Positives = 94/149 (63%)

Query:   107 QIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFV 166
             +I+ RE+ T    T+ + VS A++F   + F  G +KA EFF GY++EQSLSVDNLFVF+
Sbjct:    32 EIKFREALTW---TLVW-VSLALSFNAWIYFEMGPTKAMEFFTGYLIEQSLSVDNLFVFI 87

Query:   167 LIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 226
             +IF YF +  ++Q ++L +GI GA+V R   IL G   ++RF  +  V  GIL+ + FK+
Sbjct:    88 MIFTYFHITKVHQPKILKWGIIGALVLRAIFILAGIELIERFHWMIYVFGGILVVTGFKM 147

Query:   227 FASEEDDTDLSDNFIVKTCQRFIPVTSRI 255
                 E+  +   N IV+  ++ +P+T RI
Sbjct:   148 AFGGEEKIEPEKNPIVRLVRKLVPITKRI 176

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0855 GSU_0855 "membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 61/149 (40%), Positives = 94/149 (63%)

Query:   107 QIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFV 166
             +I+ RE+ T    T+ + VS A++F   + F  G +KA EFF GY++EQSLSVDNLFVF+
Sbjct:    32 EIKFREALTW---TLVW-VSLALSFNAWIYFEMGPTKAMEFFTGYLIEQSLSVDNLFVFI 87

Query:   167 LIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 226
             +IF YF +  ++Q ++L +GI GA+V R   IL G   ++RF  +  V  GIL+ + FK+
Sbjct:    88 MIFTYFHITKVHQPKILKWGIIGALVLRAIFILAGIELIERFHWMIYVFGGILVVTGFKM 147

Query:   227 FASEEDDTDLSDNFIVKTCQRFIPVTSRI 255
                 E+  +   N IV+  ++ +P+T RI
Sbjct:   148 AFGGEEKIEPEKNPIVRLVRKLVPITKRI 176

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q74CV1 GSU1570 "Membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 60/151 (39%), Positives = 93/151 (61%)

Query:   111 RESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFK 170
             R S+  ++      V  A+AF +G+ F+ G  KA EF  GY++E+SLSVDNLFVF++IF 
Sbjct:    31 RVSFKEALGWSILWVGLALAFNVGIYFVLGQQKALEFLTGYLIEKSLSVDNLFVFIMIFT 90

Query:   171 YFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL-F-A 228
              F V    Q RVL +GI GA++ R+  I LG   L+RF+ +  +   +L++++ K+ F A
Sbjct:    91 VFGVRGELQARVLKWGILGALIMRVVFIFLGAELLERFQWLFYIFGAVLIYTASKMAFGA 150

Query:   229 SEEDDTDLSDNFIVKTCQRFIPVTSRICCVW 259
             SEE D D   N +V+  ++ +P+T +I   W
Sbjct:   151 SEEMDPD--KNLMVRLARKVLPMTRKIRGDW 179

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1570 GSU_1570 "membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 60/151 (39%), Positives = 93/151 (61%)

Query:   111 RESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFK 170
             R S+  ++      V  A+AF +G+ F+ G  KA EF  GY++E+SLSVDNLFVF++IF 
Sbjct:    31 RVSFKEALGWSILWVGLALAFNVGIYFVLGQQKALEFLTGYLIEKSLSVDNLFVFIMIFT 90

Query:   171 YFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL-F-A 228
              F V    Q RVL +GI GA++ R+  I LG   L+RF+ +  +   +L++++ K+ F A
Sbjct:    91 VFGVRGELQARVLKWGILGALIMRVVFIFLGAELLERFQWLFYIFGAVLIYTASKMAFGA 150

Query:   229 SEEDDTDLSDNFIVKTCQRFIPVTSRICCVW 259
             SEE D D   N +V+  ++ +P+T +I   W
Sbjct:   151 SEEMDPD--KNLMVRLARKVLPMTRKIRGDW 179

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q8EG61 SO_1747 "Tellurium ion resistance family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 53/138 (38%), Positives = 84/138 (60%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFKLFASEEDDTD 235
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K+  S ++  D
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIKMLFSNDEHGD 164

Query:   236 LSDNFIVKTCQ---RFIP 250
             + DN   K  +   RF P
Sbjct:   165 IQDNKFYKWLRSKMRFTP 182

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1747 SO_1747 "membrane protein, putative" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 53/138 (38%), Positives = 84/138 (60%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFKLFASEEDDTD 235
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K+  S ++  D
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIKMLFSNDEHGD 164

Query:   236 LSDNFIVKTCQ---RFIP 250
             + DN   K  +   RF P
Sbjct:   165 IQDNKFYKWLRSKMRFTP 182

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q8E9J8 SO_4279 "Tellurium ion resistance family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 53/138 (38%), Positives = 84/138 (60%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFKLFASEEDDTD 235
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K+  S ++  D
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIKVLFSNDEHGD 164

Query:   236 LSDNFIVKTCQ---RFIP 250
             + DN   K  +   RF P
Sbjct:   165 IQDNKFYKWLRSKMRFTP 182

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_4279 SO_4279 "membrane protein, putative" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 53/138 (38%), Positives = 84/138 (60%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFKLFASEEDDTD 235
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K+  S ++  D
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIKVLFSNDEHGD 164

Query:   236 LSDNFIVKTCQ---RFIP 250
             + DN   K  +   RF P
Sbjct:   165 IQDNKFYKWLRSKMRFTP 182

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|P42601 alx "predicted membrane-bound redox modulator that is induced by high pH" [Escherichia coli K-12 (taxid:83333)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 41/113 (36%), Positives = 70/113 (61%)

Query:   143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
             +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct:    75 QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query:   203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSRI 255
               + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T  I
Sbjct:   135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTI 187

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_601243.1	annotation not avaliable (374 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_900032.1	annotation not avaliable (176 aa)	•								0.431

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
TIGR03718	302	TIGR03718, R_switched_Alx, integral membrane prote	1e-48
pfam03741	184	pfam03741, TerC, Integral membrane protein TerC fa	1e-28
COG0861	254	COG0861, TerC, Membrane protein TerC, possibly inv	1e-17
TIGR03716	215	TIGR03716, R_switched_YkoY, integral membrane prot	5e-05

>gnl|CDD|234327 TIGR03718, R_switched_Alx, integral membrane protein, TerC family

 Score =  162 bits (412), Expect = 1e-48
 Identities = 59/139 (42%), Positives = 85/139 (61%)

Query: 117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
           ++   A  VS A+ FG GV F  G   A EF  GY++E+SLSVDNLFVF+LIF YF VP 
Sbjct: 35  ALLWSAVWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPR 94

Query: 177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDL 236
            YQ+RVL +GI GA+V R   I  G A +++F  V  +    LL++  K+    +++ D 
Sbjct: 95  EYQHRVLFWGILGALVLRAIFIAAGAALIEQFHWVLYIFGAFLLYTGIKMLFEGDEEDDP 154

Query: 237 SDNFIVKTCQRFIPVTSRI 255
            +N +V+  +R +PVT + 
Sbjct: 155 ENNPLVRLVRRVLPVTDKY 173

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader. Length = 302

>gnl|CDD|217707 pfam03741, TerC, Integral membrane protein TerC family

 Score =  106 bits (268), Expect = 1e-28
 Identities = 46/106 (43%), Positives = 68/106 (64%), Gaps = 4/106 (3%)

Query: 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR 207
              Y+LE SLSVDN FV  LIF+  K+P   Q + L +GI GA+V R+ LILLG+A L+ 
Sbjct: 1   LTLYLLEISLSVDNAFVIALIFR--KLPPEQQKKALFWGIIGALVLRIILILLGSALLEL 58

Query: 208 FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTS 253
           F+ + L+    LL+++ KL    E+D +  +N IV+  ++ +PVTS
Sbjct: 59  FDWILLIGGAFLLYTAIKLLRENEEDDE--ENKIVRELKKVLPVTS 102

This family contains a number of integral membrane proteins that also contains the TerC protein. TerC has been implicated in resistance to tellurium. This protein may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of the group of clinical isolates for antibiotics and heavy metal ion resistance. Determinant of the tellurite resistance of the strain was located on a large conjugative plasmid. Analyses showed, the genes terB, terC, terD and terE are essential for conservation of the resistance. The members of the family contain a number of conserved aspartates that could be involved in binding to metal ions. Length = 184

>gnl|CDD|223930 COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

 Score = 79.2 bits (196), Expect = 1e-17
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL 205
                 +LE  L +DN  V  ++      P   + + L  G+AGA+V R+ L+   +  L
Sbjct: 19  ALLTLILLEIVLGIDNAIVIAILASKL--PPKQRKKALFIGLAGALVLRIILLASISWLL 76

Query: 206 QRFEAVNLVLAGILLFSSFKLFASEEDD 233
              + +  +    LL+   KL       
Sbjct: 77  TLTQPLLYIFGLYLLWRDIKLLLGGLFL 104

Length = 254

>gnl|CDD|234326 TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAV 211
           ILE  LS DN  V  ++ K+  +P   + + L YG+ GA VFR   + L +  L +F  +
Sbjct: 2   ILEGLLSADNALVLAVMVKH--LPEKQRKKALFYGLIGAYVFRFIALFLAS-FLIKFWWI 58

Query: 212 NLVLAGILLFSSFKLFASEEDD 233
             + A  LL+ + K F  ++  
Sbjct: 59  KAIGALYLLYLAIKHFRKKKKG 80

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed. Length = 215

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	100.0
PF03741	183	TerC: Integral membrane protein TerC family; Inter	99.92
COG0861	254	TerC Membrane protein TerC, possibly involved in t	99.9
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	99.89
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	99.83
PRK14013	338	hypothetical protein; Provisional	99.74
COG2899	346	Uncharacterized protein conserved in bacteria [Fun	99.69
PF04332	294	DUF475: Protein of unknown function (DUF475); Inte	98.9
PF03741	183	TerC: Integral membrane protein TerC family; Inter	97.3
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	97.15
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	97.14
PRK10995	221	inner membrane protein; Provisional	97.12
COG0861	254	TerC Membrane protein TerC, possibly involved in t	96.88
PRK10323	195	cysteine/O-acetylserine exporter; Provisional	96.88
PF01914	203	MarC: MarC family integral membrane protein; Inter	96.82
TIGR00427	201	membrane protein, MarC family. MarC is a protein t	96.79
PRK10739	197	putative antibiotic transporter; Provisional	96.6
PRK11111	214	hypothetical protein; Provisional	96.56
COG2095	203	MarC Multiple antibiotic transporter [Intracellula	96.34
PRK10229	206	threonine efflux system; Provisional	96.06
COG1280	208	RhtB Putative threonine efflux protein [Amino acid	95.91
PRK09304	207	arginine exporter protein; Provisional	95.9
TIGR00948	177	2a75 L-lysine exporter.	95.71
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	95.68
PRK10520	205	rhtB homoserine/homoserine lactone efflux protein;	95.48
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	94.79
PRK10958	212	leucine export protein LeuE; Provisional	94.7
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	94.69
TIGR00949	185	2A76 The Resistance to Homoserine/Threonine (RhtB)	94.56
COG1971	190	Predicted membrane protein [Function unknown]	94.3
COG1279	202	Lysine efflux permease [General function predictio	93.19
PRK11469	188	hypothetical protein; Provisional	92.29
PRK11469	188	hypothetical protein; Provisional	91.99
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	91.51
COG1971	190	Predicted membrane protein [Function unknown]	90.74
COG2119	190	Predicted membrane protein [Function unknown]	89.9
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	88.86
TIGR00779	193	cad cadmium resistance transporter (or sequestrati	88.23
COG4300	205	CadD Predicted permease, cadmium resistance protei	87.82
TIGR00900	365	2A0121 H+ Antiporter protein.	87.78
TIGR00901	356	2A0125 AmpG-related permease.	84.24
PRK14013	338	hypothetical protein; Provisional	81.36
TIGR00920	886	2A060605 3-hydroxy-3-methylglutaryl-coenzyme A red	80.8

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=100.00  E-value=2.5e-45  Score=339.50  Aligned_cols=149  Identities=42%  Similarity=0.683  Sum_probs=144.7

Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHhHHHhhcChhhHHHHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHH
Q 024890          110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG  189 (261)
Q Consensus       110 ~~~s~keAl~wS~~wV~LAllFg~~i~~~~G~~~a~eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~g  189 (261)
                      .++++|||+.||++|+++|++||+++|++.|.+.+.||+|||++|++||+||+|||+++|++|++|+++|||+|+||++|
T Consensus        28 ~~~~~kea~~ws~~~v~la~~F~~~i~~~~g~~~~~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~g  107 (302)
T TIGR03718        28 HVVSFKEALLWSAFWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILG  107 (302)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccCCCCCCCccHHHHHhhhccccccCccce
Q 024890          190 AIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSRICCV  258 (261)
Q Consensus       190 Aiv~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~~~eee~d~~~n~ivr~irk~lPvT~~y~~~  258 (261)
                      |++||++||++|++++++|+|++++||+||+|+|+|++++++|++|+++|..+|++||++|+|++||+-
T Consensus       108 AlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~  176 (302)
T TIGR03718       108 ALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTGIKMLFEGDEEDDPENNPLVRLLRRVLPVTDKYHGD  176 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCccccHHHHHHHhhcCCCccccCC
Confidence            999999999999999999999999999999999999999887777889999999999999999999983

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=99.92  E-value=2e-25  Score=193.14  Aligned_cols=104  Identities=35%  Similarity=0.537  Sum_probs=95.0

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhh
Q 024890          148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF  227 (261)
Q Consensus       148 ltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~  227 (261)
                      +|+|++|++||+||++|+++++++  +|+++|+|+++||++||+++|++|+++++++++.|+|++++||+||+|+|+|++
T Consensus         1 ltl~~lE~~Ls~DN~~vi~~~~~~--lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~~~i~~igG~~Ll~~a~k~~   78 (183)
T PF03741_consen    1 LTLVLLEIVLSIDNAFVIAMIFRK--LPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIFPWILLIGGLFLLYIAIKLL   78 (183)
T ss_pred             CchhhhhHHHHhhHHHHHHHHHhC--CCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999995  999999999999999999999999999999999779999999999999999999


Q ss_pred             hccCCCCCCCccHHHHHhhhccccccCc
Q 024890          228 ASEEDDTDLSDNFIVKTCQRFIPVTSRI  255 (261)
Q Consensus       228 ~~~eee~d~~~n~ivr~irk~lPvT~~y  255 (261)
                      ++++ ++|+ +|...+..++..|.++++
T Consensus        79 ~~~~-~~d~-~~~~~~~~~~~~~~~~~~  104 (183)
T PF03741_consen   79 HEER-DEDP-ENAEVEEEKKFFPVSKSS  104 (183)
T ss_pred             Hhcc-cccc-chhhhhhhhccccchhHH
Confidence            9876 4455 888888888888877654

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=99.90  E-value=1.3e-23  Score=190.87  Aligned_cols=101  Identities=23%  Similarity=0.272  Sum_probs=90.0

Q ss_pred             HHhHHHhhcChh--hHHHHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024890          131 FGLGVGFIEGAS--KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF  208 (261)
Q Consensus       131 Fg~~i~~~~G~~--~a~eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f  208 (261)
                      |+...|+..+.+  .+.+|+|++++|++||+||++|+++++++  +|++||||+++||++||++||+++++.++++++.+
T Consensus         2 f~~~~~~~~~~~~~~~~~l~tl~~lE~vL~iDN~iviai~~~~--Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~   79 (254)
T COG0861           2 FGIALYMEWLADPAAWVALLTLILLEIVLGIDNAIVIAILASK--LPPKQRKKALFIGLAGALVLRIILLASISWLLTLT   79 (254)
T ss_pred             chHHHHHHHhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455555555444  44699999999999999999999999995  89999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhhhhccCCC
Q 024890          209 EAVNLVLAGILLFSSFKLFASEEDD  233 (261)
Q Consensus       209 ~~I~~ifG~fLLytgiK~~~~~eee  233 (261)
                      +|++++||++|+|+++||+.+++++
T Consensus        80 ~~l~~~fg~~L~~~~~~ll~~~~~~  104 (254)
T COG0861          80 QPLLYIFGLYLLWRDIKLLLGGLFL  104 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhH
Confidence            9999999999999999999886544

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=99.89  E-value=3.4e-23  Score=184.29  Aligned_cols=80  Identities=31%  Similarity=0.503  Sum_probs=75.3

Q ss_pred             HHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccC
Q 024890          152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEE  231 (261)
Q Consensus       152 lLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~~~e  231 (261)
                      ++|++||+||++|++++++  ++|+++|+|+++||++||+++|++|+++|+++++ ++|++++||+||+|+|+|++++++
T Consensus         2 ~lE~vLS~DN~~via~~~~--~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~-~~~l~~iGG~~Ll~~~~k~l~~~~   78 (215)
T TIGR03716         2 ILEGLLSADNALVLAVMVK--HLPEKQRKKALFYGLIGAYVFRFIALFLASFLIK-FWWIKAIGALYLLYLAIKHFRKKK   78 (215)
T ss_pred             chhHHHHhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6899999999999999999  5999999999999999999999999999999997 889999999999999999999865


Q ss_pred             CCC
Q 024890          232 DDT  234 (261)
Q Consensus       232 ee~  234 (261)
                      +++
T Consensus        79 ~~~   81 (215)
T TIGR03716        79 KGK   81 (215)
T ss_pred             ccc
Confidence            443

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=99.83  E-value=5.5e-20  Score=158.66  Aligned_cols=86  Identities=26%  Similarity=0.419  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 024890          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL  226 (261)
Q Consensus       147 FltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~  226 (261)
                      +++..++|.+||+||++|++++.+  ++|+++|+|++.||+++|+++|++|+++|.++++ ++|+.++||++|+|+|+||
T Consensus         2 ~~~li~le~vLs~DN~~vi~~~t~--~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~-~~~~~iaGGllLl~ia~~m   78 (176)
T TIGR03717         2 LLQIIAIDLVLGGDNAVVIALAAR--NLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA-IPFLKLIGGLLLLWIGWKL   78 (176)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence            567889999999999999999877  7999999999999999999999999999999997 8999999999999999999


Q ss_pred             hhccCCCCC
Q 024890          227 FASEEDDTD  235 (261)
Q Consensus       227 ~~~~eee~d  235 (261)
                      ++++++++|
T Consensus        79 l~~~~~~~~   87 (176)
T TIGR03717        79 LLEEEEEQG   87 (176)
T ss_pred             Hhccccccc
Confidence            987654444

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>PRK14013 hypothetical protein; Provisional

Probab=99.74  E-value=2.3e-17  Score=155.60  Aligned_cols=115  Identities=24%  Similarity=0.246  Sum_probs=100.3

Q ss_pred             hhhhHHHHHHHHHHHHHHhHHHhhcChhhHHHHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHH-HH
Q 024890          115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VF  193 (261)
Q Consensus       115 keAl~wS~~wV~LAllFg~~i~~~~G~~~a~eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAi-v~  193 (261)
                      .+.++||++++.++++.+.++++   .......++..++|++||+||++|++.+.+  ++|+++|+|+|.||+++|+ .|
T Consensus         3 ~~~f~~s~~~t~~~l~~~~~~g~---~~~~~~~~~L~vLEisLsfDNaIvnA~vl~--~m~~~wq~~fl~~Gi~iAvFgm   77 (338)
T PRK14013          3 LRYFRWSFIVTVIGLVLAAWLGG---LSALFIVAILAVLEISLSFDNAVVNATVLK--RMSPKWQKRFLTWGILIAVFGM   77 (338)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999998887764   456667888899999999999999999999  6999999999999999998 89


Q ss_pred             HHHHHHHHHHHHHh----------------h--------hHHHHHHHHHHHHHHhhhhhccCCCC
Q 024890          194 RLSLILLGTATLQR----------------F--------EAVNLVLAGILLFSSFKLFASEEDDT  234 (261)
Q Consensus       194 RiIfI~~G~~Ll~~----------------f--------~~I~~ifG~fLLytgiK~~~~~eee~  234 (261)
                      |++|+++.+++...                |        +.+..+||+||++.+.+.+.++|+|.
T Consensus        78 Rlvfp~~iv~i~a~~~p~~~~~~a~s~~~~Y~~~l~~ah~~I~~fGG~FLlmvfL~f~fd~ek~~  142 (338)
T PRK14013         78 RLVFPLLIVAVAAGLGPIEALKLALNDPDEYAEILTDAHPQIAAFGGTFLLMVFLNFFFDEEKDV  142 (338)
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHcCCchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCcCCCc
Confidence            99999998888762                1        24788999999999999999766554

>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.69  E-value=1.6e-16  Score=148.12  Aligned_cols=120  Identities=24%  Similarity=0.293  Sum_probs=102.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhHHHhhcChhhHHHH-HHH--HHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHH
Q 024890          113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEF-FAG--YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG  189 (261)
Q Consensus       113 s~keAl~wS~~wV~LAllFg~~i~~~~G~~~a~eF-ltg--ylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~g  189 (261)
                      +..+.+.||.+.+++|++.+.|.+|.+|++.+..+ ++.  .++|+|||.||++|+|-+.+  ++.+.||||.|.|||++
T Consensus         2 ~~~r~F~~s~i~Tvi~L~~a~w~gy~~~G~~~~~l~i~~vLavLEiSLSFDNAIvNA~iLk--~MS~~Wqk~FLT~GIlI   79 (346)
T COG2899           2 TAFRYFGWSFIVTVIALALAAWLGYEYGGTMWTALFICAVLAVLEISLSFDNAIVNAAILK--DMSPFWQKRFLTWGILI   79 (346)
T ss_pred             chHhhcchHHHHHHHHHHHHHHHhHhhcCchHHHHHHHHHHHHhhhheechHHHhhHHHHH--hccHHHHHHHHHHHHHH
Confidence            45788999999999999999999998887655443 333  58999999999999999999  59999999999999999


Q ss_pred             HHH-HHHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHhhhhhccCCCC
Q 024890          190 AIV-FRLSLILLGTATLQR------------------------FEAVNLVLAGILLFSSFKLFASEEDDT  234 (261)
Q Consensus       190 Aiv-~RiIfI~~G~~Ll~~------------------------f~~I~~ifG~fLLytgiK~~~~~eee~  234 (261)
                      |++ ||++|.++-++.-..                        .+.|-.+||.||++.+.+++.+.|+|.
T Consensus        80 AVFGMRlvFPl~IV~vaa~~~pi~a~~lAl~~P~~Y~~ii~~aH~~IAAFGG~FLlMv~L~fffd~erd~  149 (346)
T COG2899          80 AVFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITDAHPQIAAFGGTFLLMVFLDFFFDHERDV  149 (346)
T ss_pred             HHHhhHHHHHHHHHHHhcCCChHHHHHHHccCcHHHHHHHHhcCchhhhhhhHHHHHHHHHHhcCccccc
Confidence            995 999999987766542                        234788999999999999999866554

>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains

Probab=98.90  E-value=2.5e-09  Score=99.99  Aligned_cols=72  Identities=26%  Similarity=0.373  Sum_probs=63.2

Q ss_pred             hhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHh----------------h--------hHHHH
Q 024890          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQR----------------F--------EAVNL  213 (261)
Q Consensus       159 vDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Ll~~----------------f--------~~I~~  213 (261)
                      .||++|+|.+.+  ++.+.||++.|.|||+.|++ ||++|+++.+++...                |        +.+..
T Consensus         1 FDNAVVNA~vLk--~Ms~~Wq~~FLtwGIlIAVFGMRlvFPllIV~~~a~lgp~ea~~lA~~~p~~Y~~~l~~ah~~Iaa   78 (294)
T PF04332_consen    1 FDNAVVNATVLK--RMSPFWQRRFLTWGILIAVFGMRLVFPLLIVWVTAGLGPIEALRLALNDPPQYAEILEDAHPQIAA   78 (294)
T ss_pred             CCchhhhHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHhCCHHHHHHHHHhhhHHHHH
Confidence            599999999999  59999999999999999995 999999998887652                1        23788


Q ss_pred             HHHHHHHHHHhhhhhccCC
Q 024890          214 VLAGILLFSSFKLFASEED  232 (261)
Q Consensus       214 ifG~fLLytgiK~~~~~ee  232 (261)
                      +||.||++.+.+.+.++++
T Consensus        79 FGG~FLlmvfL~f~f~~~k   97 (294)
T PF04332_consen   79 FGGMFLLMVFLDFFFDEEK   97 (294)
T ss_pred             HhHHHHHHHHHheeecCCc
Confidence            9999999999999997655

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=97.30  E-value=0.0033  Score=55.03  Aligned_cols=71  Identities=24%  Similarity=0.240  Sum_probs=57.8

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhh
Q 024890          149 AGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF  227 (261)
Q Consensus       149 tgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~  227 (261)
                      +.-+.+.+.|+||+.....+.+        +--.+..|.+.|+. ||...-. -+.++++|+++.+.++++|.|+|.||+
T Consensus       111 ~I~~~DlvfSlDSV~a~~~it~--------~~~iv~~g~i~si~~m~~~~~~-~~~~l~~~p~l~~~~~~~L~~ig~~li  181 (183)
T PF03741_consen  111 QIELADLVFSLDSVLAAVGITD--------DFFIVITGNIISILLMRFLSFL-LAKLLERFPYLKYLAAAILGFIGVKLI  181 (183)
T ss_pred             HHHHHHHHHHHhHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3457899999999998887763        55678889888884 7766544 556778999999999999999999997


Q ss_pred             h
Q 024890          228 A  228 (261)
Q Consensus       228 ~  228 (261)
                      .
T Consensus       182 ~  182 (183)
T PF03741_consen  182 L  182 (183)
T ss_pred             h
Confidence            5

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=97.15  E-value=0.0044  Score=55.98  Aligned_cols=74  Identities=19%  Similarity=0.261  Sum_probs=60.2

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 024890          148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL  226 (261)
Q Consensus       148 ltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAi-v~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~  226 (261)
                      .+..+.+.+.|+||+.....+.+        ..-.+..|.+.++ +||..--.+ +.++++|+++.+.+.++|.|+|.||
T Consensus       100 ~~I~~~DlvFSlDSV~A~~git~--------~~~ii~~g~~~sIl~lr~~s~~l-~~li~r~p~L~~~~~~iL~~ig~kL  170 (215)
T TIGR03716       100 LKVELMDIAFSVDSILAAVALSG--------QFWVVFLGGIIGILIMRFAATIF-VKLLERFPELETAAFLLIGWIGVKL  170 (215)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcc--------ChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34457899999999988877754        3457888888888 588776665 6688899999999999999999999


Q ss_pred             hhcc
Q 024890          227 FASE  230 (261)
Q Consensus       227 ~~~~  230 (261)
                      +.+.
T Consensus       171 il~~  174 (215)
T TIGR03716       171 LLET  174 (215)
T ss_pred             HHHH
Confidence            8864

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=97.14  E-value=0.0062  Score=53.12  Aligned_cols=74  Identities=16%  Similarity=0.135  Sum_probs=55.8

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhh
Q 024890          149 AGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFA  228 (261)
Q Consensus       149 tgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~  228 (261)
                      ...+.+.+.|+||+.....+.+.       +-.++..|+..++.+=...--.-..++++|+++.+.++++|.|+|.||+.
T Consensus       102 ~I~~~D~~fS~DsV~a~~~~~~~-------~~~li~~g~~i~i~~m~~~s~~~~~~~~~~p~l~~~~~~~L~~ig~kl~~  174 (176)
T TIGR03717       102 TIVIADAVMSLDNVLAVAGAAHG-------HLGLLIFGLLLSIPIIVWGSTLILKLMDRFPWIIYIGAALLGYVAGEMIV  174 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33577999999999887766652       44577888877774333333345667779999999999999999999986


Q ss_pred             c
Q 024890          229 S  229 (261)
Q Consensus       229 ~  229 (261)
                      +
T Consensus       175 ~  175 (176)
T TIGR03717       175 T  175 (176)
T ss_pred             C
Confidence            3

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>PRK10995 inner membrane protein; Provisional

Probab=97.12  E-value=0.0046  Score=55.15  Aligned_cols=70  Identities=11%  Similarity=0.192  Sum_probs=61.7

Q ss_pred             hhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024890          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (261)
Q Consensus       159 vDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f----~~I~~ifG~fLLytgiK~~~~~  230 (261)
                      +.|+-+|....+  +.++++|+|+..-..+.|.+.=+++.+.|..+++-|    +.....||++|++.|++|++++
T Consensus        22 ~g~~pif~~lt~--~~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~   95 (221)
T PRK10995         22 LTTVALFLGLSG--NMTPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQ   95 (221)
T ss_pred             hhhHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            568888999988  589999999999999999998899999999999843    4689999999999999999764

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=96.88  E-value=0.02  Score=53.03  Aligned_cols=71  Identities=24%  Similarity=0.273  Sum_probs=59.9

Q ss_pred             HHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhc
Q 024890          151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFAS  229 (261)
Q Consensus       151 ylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAi-v~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~~  229 (261)
                      .+++.+-|+||+.....+.+        +.-+++.|.+.|+ +||...-. -+.++++++++.+.+.++|+|+|.||+.+
T Consensus       141 ~i~D~vFSlDSV~Aa~g~~~--------~~~im~~a~i~aI~~m~~aa~~-l~~ll~r~p~l~~~~~~iL~~IG~kli~~  211 (254)
T COG0861         141 ELADLVFSLDSVIAAVGMAG--------HPFVMVTAVIFAILVMRFAAFL-LARLLERHPTLKYLALVILLFIGVKLILE  211 (254)
T ss_pred             HHHHHHHhhhHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHH-HHHHHHHchHHHHHHHHHHHHHHHHHHHh
Confidence            57899999999998887774        4567999999999 57776544 45678899999999999999999999987


Q ss_pred             c
Q 024890          230 E  230 (261)
Q Consensus       230 ~  230 (261)
                      +
T Consensus       212 ~  212 (254)
T COG0861         212 G  212 (254)
T ss_pred             h
Confidence            5

>PRK10323 cysteine/O-acetylserine exporter; Provisional

Probab=96.88  E-value=0.021  Score=49.30  Aligned_cols=70  Identities=11%  Similarity=0.045  Sum_probs=48.4

Q ss_pred             hhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhH----HHHHHHHHHHHHHhhhhhcc
Q 024890          157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVLAGILLFSSFKLFASE  230 (261)
Q Consensus       157 LSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~-~Ll~~f~~----I~~ifG~fLLytgiK~~~~~  230 (261)
                      =+-||++++..-.++ +.   .+--....|+..+.+.=+++...|. .+++++++    ++++|++||+|.|+|+++.+
T Consensus        20 PGP~~~~v~~~~~~~-G~---r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s~   94 (195)
T PRK10323         20 PGPNNILALSSATSH-GF---RQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSP   94 (195)
T ss_pred             CChHHHHHHHHHHHh-CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            377999999887763 11   1122355677777666555555555 56655554    78999999999999999864

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=96.82  E-value=0.0098  Score=52.64  Aligned_cols=71  Identities=17%  Similarity=0.261  Sum_probs=63.0

Q ss_pred             hhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024890          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (261)
Q Consensus       158 SvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f----~~I~~ifG~fLLytgiK~~~~~  230 (261)
                      -..|+.+|....+  +.++++|+|+..-..+.|.+.=.+|.++|-.+++-|    +-....||+.|+..|++|+..+
T Consensus        17 P~g~ip~f~~lt~--~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~   91 (203)
T PF01914_consen   17 PIGNIPIFLSLTK--GMSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGS   91 (203)
T ss_pred             HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3578889999998  589999999999999999999999999999999854    3589999999999999999764

These proteins may be transporters. ; GO: 0016021 integral to membrane

>TIGR00427 membrane protein, MarC family

Probab=96.79  E-value=0.01  Score=52.54  Aligned_cols=71  Identities=14%  Similarity=0.319  Sum_probs=62.7

Q ss_pred             hhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024890          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (261)
Q Consensus       158 SvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f----~~I~~ifG~fLLytgiK~~~~~  230 (261)
                      -..|+-+|....+  +.++++|+|+.....+.|.+.=++|.++|-.+++-|    +-....||+.|+.+|++|+..+
T Consensus        20 Pig~ipvfl~lt~--~~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~   94 (201)
T TIGR00427        20 PIGNIPIFISLTE--YYTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGE   94 (201)
T ss_pred             cchHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4678999999998  589999999999999999999999999999999844    3589999999999999998653

MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.

>PRK10739 putative antibiotic transporter; Provisional

Probab=96.60  E-value=0.016  Score=51.48  Aligned_cols=71  Identities=18%  Similarity=0.295  Sum_probs=62.7

Q ss_pred             hhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024890          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (261)
Q Consensus       158 SvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f----~~I~~ifG~fLLytgiK~~~~~  230 (261)
                      -..|+-+|..+.+  +.++++|+|+..-..+.|.+.=++|.++|-.+++-|    +-....||+.|+..|++|+.++
T Consensus        17 Pig~ipiflslt~--~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~   91 (197)
T PRK10739         17 PLGNLPIFMSVLK--HLEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPS   91 (197)
T ss_pred             HhhHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4578899999998  589999999999999999988889999999999854    3589999999999999999765

>PRK11111 hypothetical protein; Provisional

Probab=96.56  E-value=0.018  Score=51.71  Aligned_cols=69  Identities=14%  Similarity=0.190  Sum_probs=60.7

Q ss_pred             hhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhc
Q 024890          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFAS  229 (261)
Q Consensus       159 vDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f----~~I~~ifG~fLLytgiK~~~~  229 (261)
                      +.|+-+|....+  +.++++|+|+.....+.|.+.=++|.++|-++++-|    +-....||+.|+.+|++|+..
T Consensus        24 ig~ipiflslt~--~~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g   96 (214)
T PRK11111         24 VGILPVFISMTS--HQTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISG   96 (214)
T ss_pred             chhHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            568888999988  579999999999999999988889999999999844    358999999999999999965

>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]

Probab=96.34  E-value=0.025  Score=50.72  Aligned_cols=73  Identities=23%  Similarity=0.295  Sum_probs=64.0

Q ss_pred             HhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHhhhhhcc
Q 024890          156 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE----AVNLVLAGILLFSSFKLFASE  230 (261)
Q Consensus       156 sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~----~I~~ifG~fLLytgiK~~~~~  230 (261)
                      +=...|+-+|..+.+  +.|+++|+|+..-..+.|.+.=.+|.++|-++++-|.    -....||+.|.+.|++|+..+
T Consensus        18 ~dP~G~ipvf~slt~--~~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~~   94 (203)
T COG2095          18 IDPIGNLPVFISLTK--GLSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFGP   94 (203)
T ss_pred             hCCCchhHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhcCC
Confidence            445789999999999  5899999999999999999999999999999998443    478999999999999998764

>PRK10229 threonine efflux system; Provisional

Probab=96.06  E-value=0.08  Score=45.55  Aligned_cols=77  Identities=14%  Similarity=0.148  Sum_probs=52.1

Q ss_pred             HHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhh----HHHHHHHHHHHHHHh
Q 024890          150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQRFE----AVNLVLAGILLFSSF  224 (261)
Q Consensus       150 gylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~-Ll~~f~----~I~~ifG~fLLytgi  224 (261)
                      +.++-.+=+-||++++..-.++ +   ..+--....|+..|...=.++..+|.. +++.++    .++++|++||+|.|+
T Consensus        12 ~~~~~~sPGP~~~~vi~~~~~~-G---~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~   87 (206)
T PRK10229         12 HIVALMSPGPDFFFVSQTAVSR-S---RKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGY   87 (206)
T ss_pred             HHHHhcCCCchhHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            4456666778999999887774 1   112223445565565666666566664 555544    478999999999999


Q ss_pred             hhhhcc
Q 024890          225 KLFASE  230 (261)
Q Consensus       225 K~~~~~  230 (261)
                      ++++++
T Consensus        88 ~~~~~~   93 (206)
T PRK10229         88 QMLRGA   93 (206)
T ss_pred             HHHHhc
Confidence            999864

>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]

Probab=95.91  E-value=0.099  Score=45.97  Aligned_cols=76  Identities=25%  Similarity=0.294  Sum_probs=49.7

Q ss_pred             HHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHh----hhHHHHHHHHHHHHHHhh
Q 024890          151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQR----FEAVNLVLAGILLFSSFK  225 (261)
Q Consensus       151 ylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~-~Ll~~----f~~I~~ifG~fLLytgiK  225 (261)
                      .++-.+=+=||+.|++.-.++    -..+--....|+..+.+.=.++..+|. .++..    |..++++|++||+|.|+|
T Consensus        14 ~~~~~~PGP~~~~v~~~~~~~----G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~   89 (208)
T COG1280          14 LVLAATPGPDNLLVLARSLSR----GRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLGWK   89 (208)
T ss_pred             HHHhcCCCccHHHHHHHHHHh----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            445555677999998887762    111222333444444555556666663 55554    455899999999999999


Q ss_pred             hhhcc
Q 024890          226 LFASE  230 (261)
Q Consensus       226 ~~~~~  230 (261)
                      +++.+
T Consensus        90 ~~ra~   94 (208)
T COG1280          90 ALRAG   94 (208)
T ss_pred             HHhcc
Confidence            99864

>PRK09304 arginine exporter protein; Provisional

Probab=95.90  E-value=0.15  Score=44.30  Aligned_cols=78  Identities=18%  Similarity=0.144  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhH----HHHHHHHHHHH
Q 024890          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQRFEA----VNLVLAGILLF  221 (261)
Q Consensus       147 FltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~-Ll~~f~~----I~~ifG~fLLy  221 (261)
                      ++.|+.+-..=+-||++++..-.+.      .+.-....|+..+.++=.....+|.. +++.+++    ++++|++||+|
T Consensus         9 ~~~g~~~~~tPGP~~~~v~~~~~~~------~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLly   82 (207)
T PRK09304          9 FALGAAMILPLGPQNAFVMNQGIRR------QYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLW   82 (207)
T ss_pred             HHHHHHHHhccChHHHHHHHHHHcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556667777778999999876551      12334555666666666565556664 4666665    78999999999


Q ss_pred             HHhhhhhcc
Q 024890          222 SSFKLFASE  230 (261)
Q Consensus       222 tgiK~~~~~  230 (261)
                      .|+|+++++
T Consensus        83 Lg~~~~rs~   91 (207)
T PRK09304         83 YGFGAFKTA   91 (207)
T ss_pred             HHHHHHHHh
Confidence            999999864

>TIGR00948 2a75 L-lysine exporter

Probab=95.71  E-value=0.11  Score=43.69  Aligned_cols=67  Identities=15%  Similarity=0.071  Sum_probs=47.2

Q ss_pred             hhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHh----hhHHHHHHHHHHHHHHhhhhhcc
Q 024890          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQR----FEAVNLVLAGILLFSSFKLFASE  230 (261)
Q Consensus       158 SvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~-Ll~~----f~~I~~ifG~fLLytgiK~~~~~  230 (261)
                      +-||++++..-.+.     + +--....|+..+...=+++..+|.. +++.    +..++++||+||+|.|+|+++++
T Consensus         6 GP~~~~vi~~~~~~-----~-~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~   77 (177)
T TIGR00948         6 GAQNAFVLRQGIRR-----E-HVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTA   77 (177)
T ss_pred             cchHHHHHHHHHcc-----c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56888888887762     1 2233455666666666666666665 5554    34589999999999999999864

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=95.68  E-value=0.044  Score=52.08  Aligned_cols=70  Identities=23%  Similarity=0.193  Sum_probs=57.2

Q ss_pred             HHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhc
Q 024890          151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFAS  229 (261)
Q Consensus       151 ylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAi-v~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~~  229 (261)
                      -+.+.+-|+||+..+..+.+.        .-+.+.|-+.|+ .+|.+..+ -..++++|+++.+.++++|.++|+||+.+
T Consensus       199 e~~DlvFslDSIpAi~aiT~d--------~~iV~tsnifaIlgLR~lyf~-l~~ll~rf~~L~~~~a~iL~fIGvkmll~  269 (302)
T TIGR03718       199 ETTDLIFAVDSIPAIFAITQD--------PFIVFTSNIFAILGLRSLYFL-LAGLLERFHYLKYGLAVILVFIGVKMLLH  269 (302)
T ss_pred             HHHHHHHhhccHHHHHHhhcC--------CeEEehHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            467899999999998888763        335666666666 59988655 56778899999999999999999999885

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional

Probab=95.48  E-value=0.27  Score=42.38  Aligned_cols=73  Identities=11%  Similarity=0.147  Sum_probs=48.2

Q ss_pred             HHHHHhhhhhHHHHHHHhccCCCChhhhhHHHH--HHHHHHHHHHHHHHHHHHH-HHHhhh----HHHHHHHHHHHHHHh
Q 024890          152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLS--YGIAGAIVFRLSLILLGTA-TLQRFE----AVNLVLAGILLFSSF  224 (261)
Q Consensus       152 lLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~--~GI~gAiv~RiIfI~~G~~-Ll~~f~----~I~~ifG~fLLytgi  224 (261)
                      ++=.+=+-||+.++..-.++      -+++.+.  .|+..+...=+++..+|.. +++.++    .++++|++||+|.|+
T Consensus        15 ~~~~sPGP~~~~v~~~~~~~------G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~   88 (205)
T PRK10520         15 ILSLSPGSGAINTMSTSISH------GYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGI   88 (205)
T ss_pred             HHhcCCchhHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            34445566888888776552      2334433  3555555666666666654 445444    489999999999999


Q ss_pred             hhhhcc
Q 024890          225 KLFASE  230 (261)
Q Consensus       225 K~~~~~  230 (261)
                      |+++.+
T Consensus        89 ~~~~s~   94 (205)
T PRK10520         89 QQWRAA   94 (205)
T ss_pred             HHHhCC
Confidence            999864

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=94.79  E-value=0.25  Score=41.54  Aligned_cols=68  Identities=24%  Similarity=0.202  Sum_probs=43.2

Q ss_pred             hhhhhHHHHHHHhccCCCChhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHh-h----hHHHHHHHHHHHHHHhhhhhc
Q 024890          157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSY--GIAGAIVFRLSLILLGTATLQR-F----EAVNLVLAGILLFSSFKLFAS  229 (261)
Q Consensus       157 LSvDNafVfa~If~~FkvP~~~Q~RvL~~--GI~gAiv~RiIfI~~G~~Ll~~-f----~~I~~ifG~fLLytgiK~~~~  229 (261)
                      .+-+|+.++..-.++      -+++.+..  |...+...=+++..+|...+-+ .    .++.++||+||+|.|++++++
T Consensus         7 PGP~~~~~i~~~~~~------G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~   80 (191)
T PF01810_consen    7 PGPVNLLVISNGLRK------GFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRS   80 (191)
T ss_pred             CCHHHHHHHHHHHHh------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            356788888776652      23344433  3333334445555555555532 3    458999999999999999987


Q ss_pred             c
Q 024890          230 E  230 (261)
Q Consensus       230 ~  230 (261)
                      +
T Consensus        81 ~   81 (191)
T PF01810_consen   81 K   81 (191)
T ss_pred             c
Confidence            4

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>PRK10958 leucine export protein LeuE; Provisional

Probab=94.70  E-value=0.38  Score=42.19  Aligned_cols=70  Identities=17%  Similarity=0.145  Sum_probs=47.3

Q ss_pred             HHhhhhhHHHHHHHhccCCCChhhhhHHHH--HHHHHHHHHHHHHHHHHHH-HHHhh----hHHHHHHHHHHHHHHhhhh
Q 024890          155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLS--YGIAGAIVFRLSLILLGTA-TLQRF----EAVNLVLAGILLFSSFKLF  227 (261)
Q Consensus       155 ~sLSvDNafVfa~If~~FkvP~~~Q~RvL~--~GI~gAiv~RiIfI~~G~~-Ll~~f----~~I~~ifG~fLLytgiK~~  227 (261)
                      .+=+-||++++..-.++      -+++.+.  .|+..+.+.=++...+|.. +++.+    ..++++||+||+|.|+|.+
T Consensus        22 ~sPGP~~~~v~~~~~~~------G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~   95 (212)
T PRK10958         22 LLPGPNSLYVLSTAARR------GVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKML   95 (212)
T ss_pred             cCCchHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677999998887663      2344444  4555555555555555654 34344    4489999999999999999


Q ss_pred             hcc
Q 024890          228 ASE  230 (261)
Q Consensus       228 ~~~  230 (261)
                      +++
T Consensus        96 ~~~   98 (212)
T PRK10958         96 RAA   98 (212)
T ss_pred             Hhh
Confidence            864

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=94.69  E-value=0.18  Score=45.06  Aligned_cols=72  Identities=22%  Similarity=0.272  Sum_probs=46.3

Q ss_pred             hhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHhhhhhccC
Q 024890          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR--FEAVNLVLAGILLFSSFKLFASEE  231 (261)
Q Consensus       158 SvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~--f~~I~~ifG~fLLytgiK~~~~~e  231 (261)
                      .+|.++|....|+.  .+.+.|+|-..+|=..+...=++.-+++...+..  =+|+.-+.|+.=++.|+|.+.++|
T Consensus         5 niDd~~iL~~~F~~--~~~~~~~~~I~~GqylG~~~Lv~~Sl~~~~~l~~ip~~wiLGlLGliPI~lGi~~l~~~~   78 (191)
T PF03596_consen    5 NIDDIVILLLFFAQ--VKTRFRRRQIVIGQYLGFTILVLASLLGAFGLLFIPPEWILGLLGLIPIYLGIKALFSGE   78 (191)
T ss_pred             cHHHHHHHHHHHhc--ccCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            68999999999995  5555567777777333332222222222222222  268888899999999999776543

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein

Probab=94.56  E-value=0.35  Score=40.59  Aligned_cols=65  Identities=15%  Similarity=0.184  Sum_probs=43.2

Q ss_pred             hhhHHHHHHHhccCCCChhhhhHHH--HHHHHHHHHHHHHHHHHHH-HHHHhhh----HHHHHHHHHHHHHHhhhhhc
Q 024890          159 VDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFSSFKLFAS  229 (261)
Q Consensus       159 vDNafVfa~If~~FkvP~~~Q~RvL--~~GI~gAiv~RiIfI~~G~-~Ll~~f~----~I~~ifG~fLLytgiK~~~~  229 (261)
                      -||++++..-.++      -+++++  ..|+..+.+.=+++..+|. .+++.++    .+.++||+||+|.|++++++
T Consensus         4 P~~~~~~~~~~~~------G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~   75 (185)
T TIGR00949         4 PNFFVVMQTSLSS------GRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK   75 (185)
T ss_pred             cchHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4777777766552      133444  4455666666555555555 3554444    47999999999999999985

>COG1971 Predicted membrane protein [Function unknown]

Probab=94.30  E-value=0.41  Score=43.09  Aligned_cols=81  Identities=16%  Similarity=0.135  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHH
Q 024890          146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-----EAVNLVLAGILL  220 (261)
Q Consensus       146 eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f-----~~I~~ifG~fLL  220 (261)
                      ++++..++-..+|.||..|=.. -.--+.+.+ -+..|..|+...+ +-+++.++|..+=+-+     .|-.+++++.|+
T Consensus         2 ~~~sllllA~alsmDAFav~l~-~G~~~~k~~-~~~~L~ia~~fG~-f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~   78 (190)
T COG1971           2 NIISLLLLAIALSMDAFAVSLG-KGLAKHKIR-FKEALVIALIFGV-FQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLI   78 (190)
T ss_pred             cHHHHHHHHHHHhhHHHHHHHH-hhhhhcccc-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677888999999999755322 111122222 2445555555443 4556666665544322     366789999999


Q ss_pred             HHHhhhhhc
Q 024890          221 FSSFKLFAS  229 (261)
Q Consensus       221 ytgiK~~~~  229 (261)
                      +.|.+|+.+
T Consensus        79 ~lG~~mI~e   87 (190)
T COG1971          79 ILGLKMIIE   87 (190)
T ss_pred             HHHHHHHHH
Confidence            999999876

>COG1279 Lysine efflux permease [General function prediction only]

Probab=93.19  E-value=1  Score=40.92  Aligned_cols=75  Identities=23%  Similarity=0.270  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhH----HHHHHHHH
Q 024890          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT----ATLQRFEA----VNLVLAGI  218 (261)
Q Consensus       147 FltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~----~Ll~~f~~----I~~ifG~f  218 (261)
                      |+-|.-+=..+++.|+||+-.-.+        |+++|..-+. +.+.=+++|.+|+    .++++-+|    +.+.|.+|
T Consensus         9 fll~~~LI~pIGaQNaFVl~QGi~--------r~~~l~~~~~-c~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~F   79 (202)
T COG1279           9 FLLGASLILPIGAQNAFVLNQGIR--------REYVLPIALL-CAISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAF   79 (202)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHh--------hccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            444445567789999999876554        4566655443 4455555555433    44445555    67788899


Q ss_pred             HHHHHhhhhhcc
Q 024890          219 LLFSSFKLFASE  230 (261)
Q Consensus       219 LLytgiK~~~~~  230 (261)
                      |+|.|++-+++.
T Consensus        80 Ll~yg~~a~~~a   91 (202)
T COG1279          80 LLYYGLLALKSA   91 (202)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998763

>PRK11469 hypothetical protein; Provisional

Probab=92.29  E-value=1.7  Score=38.39  Aligned_cols=81  Identities=14%  Similarity=0.059  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHhh-hHHHHHHHHHHH
Q 024890          146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILL----GTATLQRF-EAVNLVLAGILL  220 (261)
Q Consensus       146 eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~----G~~Ll~~f-~~I~~ifG~fLL  220 (261)
                      ++++..++=.+||.||..|=...=.  +.++...++.+...+..+. +-.+++++    |..+-+-. ++-..+++..|+
T Consensus         2 ~~~~i~llaialsmDaF~v~ia~G~--~~~~~~~~~~~~~~l~~g~-~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~   78 (188)
T PRK11469          2 NITATVLLAFGMSMDAFAASIGKGA--TLHKPKFSEALRTGLIFGA-VETLTPLIGWGMGMLASRFVLEWNHWIAFVLLI   78 (188)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhh--cccCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788899999999765443221  2333333444444443333 23444443    44333311 234677888899


Q ss_pred             HHHhhhhhc
Q 024890          221 FSSFKLFAS  229 (261)
Q Consensus       221 ytgiK~~~~  229 (261)
                      +.|.+|+.+
T Consensus        79 ~lG~~mi~e   87 (188)
T PRK11469         79 FLGGRMIIE   87 (188)
T ss_pred             HHHHHHHHH
Confidence            999999875

>PRK11469 hypothetical protein; Provisional

Probab=91.99  E-value=2.4  Score=37.39  Aligned_cols=98  Identities=18%  Similarity=0.195  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHhHHHhhc----Ch-h------hHHHHHHHHHHHHHhhhhhHHH-HHHHhccCCCChhhhhHHHHHHHHHH
Q 024890          123 FCVSTAVAFGLGVGFIE----GA-S------KASEFFAGYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGA  190 (261)
Q Consensus       123 ~wV~LAllFg~~i~~~~----G~-~------~a~eFltgylLE~sLSvDNafV-fa~If~~FkvP~~~Q~RvL~~GI~gA  190 (261)
                      =|++..+++.+++|...    +. +      .-..+....++=.++|+||+.| +..-+.  ++|.  -.-++..|+...
T Consensus        70 ~~i~~~lL~~lG~~mi~e~~~~~~~~~~~~~~~~~~~~~l~LaiAtSiDAlavGi~~~~~--g~~~--~~~~~~ig~~s~  145 (188)
T PRK11469         70 HWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATSLDAMAVGVGLAFL--QVNI--IATALAIGCATL  145 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHh--hhhH--HHHHHHHHHHHH
Confidence            48888888877777532    11 1      1123456677888999999988 555554  3432  223444554443


Q ss_pred             HHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHhhhhhc
Q 024890          191 IVFRLSLILLGTATLQRF-----EAVNLVLAGILLFSSFKLFAS  229 (261)
Q Consensus       191 iv~RiIfI~~G~~Ll~~f-----~~I~~ifG~fLLytgiK~~~~  229 (261)
                           ++..+|.++=.++     .|..+++|+.|+..|+|++.+
T Consensus       146 -----~~~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi~il~~  184 (188)
T PRK11469        146 -----IMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQILWT  184 (188)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 3444444333211     367889999999999999864

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=91.51  E-value=1.9  Score=38.28  Aligned_cols=76  Identities=16%  Similarity=0.149  Sum_probs=44.4

Q ss_pred             HHHHHHHhhhhhHHH-HHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-HHHHHHHHHHHHHHhhh
Q 024890          150 GYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-E-AVNLVLAGILLFSSFKL  226 (261)
Q Consensus       150 gylLE~sLSvDNafV-fa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f-~-~I~~ifG~fLLytgiK~  226 (261)
                      ..++=.+||.|+..| ++.-.+.  ++. .-+.++.+|++-+ +|=.+-.++|..+-+.+ . +-.+++|+.|++.|.+|
T Consensus         3 i~llaials~Daf~vgi~~G~~~--~~~-~~~~~l~ig~~~~-~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~m   78 (206)
T TIGR02840         3 LLLLAFAVSLDSFGVGIAYGLRK--IKI-PFLSNLIIAVISG-LFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWI   78 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc--CCh-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence            356778999999877 3333332  222 1234455555444 22222233344444323 2 46789999999999999


Q ss_pred             hhc
Q 024890          227 FAS  229 (261)
Q Consensus       227 ~~~  229 (261)
                      +.+
T Consensus        79 i~~   81 (206)
T TIGR02840        79 IYN   81 (206)
T ss_pred             HHH
Confidence            875

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>COG1971 Predicted membrane protein [Function unknown]

Probab=90.74  E-value=4.9  Score=36.34  Aligned_cols=100  Identities=20%  Similarity=0.168  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHhHHHhhc----Chhh--------H-HHHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHH
Q 024890          122 AFCVSTAVAFGLGVGFIE----GASK--------A-SEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIA  188 (261)
Q Consensus       122 ~~wV~LAllFg~~i~~~~----G~~~--------a-~eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~  188 (261)
                      .=|++-+++..++++...    +.+.        . ..|.+..++-.+.|.||+.|=+-..-   ++-.-+.-+...|++
T Consensus        69 ~~wigf~lL~~lG~~mI~e~f~~~~~~~~~~~~~~~~~~~~~~~laiatSidal~vG~~~a~---lgv~i~~~av~iG~~  145 (190)
T COG1971          69 AHWIGFVLLIILGLKMIIEGFKNEEDEFVDPAEKHDLNFKELILLAIATSIDALAVGVGLAF---LGVNILLAAVAIGLI  145 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhchhhcchhcccccchhhHHHHHHHHHHHHHHHHHHhhhHHH---hcchHHHHHHHHHHH
Confidence            457777777777776532    1111        1 12777889999999999977654433   454556666666654


Q ss_pred             HHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHhhhhhc
Q 024890          189 GAIVFRLSLILLGTATLQRF-----EAVNLVLAGILLFSSFKLFAS  229 (261)
Q Consensus       189 gAiv~RiIfI~~G~~Ll~~f-----~~I~~ifG~fLLytgiK~~~~  229 (261)
                      -     +++..+|..+=+++     .+..++||+.|+..|.|.+.+
T Consensus       146 T-----~il~~~G~~IG~~~g~~~g~~ae~lgGiiLI~~G~~iL~~  186 (190)
T COG1971         146 T-----LILSALGAIIGRKLGKFLGKYAEILGGIILIGIGVKILLE  186 (190)
T ss_pred             H-----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            2     23344444433322     367899999999999998875

>COG2119 Predicted membrane protein [Function unknown]

Probab=89.90  E-value=1.4  Score=39.92  Aligned_cols=67  Identities=15%  Similarity=0.211  Sum_probs=56.1

Q ss_pred             hhhHHHHHHHhccCCCChhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHhhhhhcc
Q 024890          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFE--AVNLVLAGILLFSSFKLFASE  230 (261)
Q Consensus       159 vDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAi-v~RiIfI~~G~~Ll~~f~--~I~~ifG~fLLytgiK~~~~~  230 (261)
                      +|--+.++++...     ++|++..+.|+.+|. .|-++-..+|-+..+-++  +..++.|..-+..|+|++.++
T Consensus        17 GDKT~lia~llA~-----r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~ed   86 (190)
T COG2119          17 GDKTQLIAMLLAM-----RYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIED   86 (190)
T ss_pred             ccHHHHHHHHHHH-----hcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhccc
Confidence            6888899988764     677889999999999 488888888999887556  788888888888899998875

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=88.86  E-value=12  Score=32.15  Aligned_cols=71  Identities=20%  Similarity=0.105  Sum_probs=45.0

Q ss_pred             HHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHh
Q 024890          152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLAGILLFSSF  224 (261)
Q Consensus       152 lLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~--I~~ifG~fLLytgi  224 (261)
                      +.-..-+.-+....+++.+.  .|+++|.++.-+-..+.-+-.++...++..+.+.+.|  ..++.++..+..++
T Consensus        94 l~g~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i  166 (352)
T PF07690_consen   94 LLGIGSGFFSPASNALIADW--FPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI  166 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--CCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccc--chhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence            33333456666777777775  6777777777555555556677777788888766555  55555555555444

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein

Probab=88.23  E-value=0.74  Score=41.42  Aligned_cols=73  Identities=18%  Similarity=0.195  Sum_probs=46.5

Q ss_pred             hhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccCCCC
Q 024890          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRL---SLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDT  234 (261)
Q Consensus       158 SvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~Ri---IfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~~~eee~  234 (261)
                      .+|.++|....|+.  +. +.|+|-..+|=......=+   ++.+.|..++- =.|+.-+.|+.=++.|+|.+.++|||+
T Consensus         5 niDdi~vL~~fF~~--~~-~~~~~~IviGqylGf~~Lv~~Sl~~a~gl~~iP-~~wIlGlLGliPI~lGi~~l~~~~~~~   80 (193)
T TIGR00779         5 GVDLLVILLIFFAR--AK-RKEYKDIYIGQYLGSIILILVSLLLAFGVNLIP-EKWVLGLLGLIPIYLGIKVAIKGECDE   80 (193)
T ss_pred             cHHHHHHHHHHHHH--cc-CCCeeEEEEeHHHHHHHHHHHHHHHHHHHHhCC-HHHHHhHHhHHHHHHHHHHHhcccccc
Confidence            57999999999985  55 6666666555443332211   22233333332 258888899999999999877655443

These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).

>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]

Probab=87.82  E-value=3.1  Score=37.92  Aligned_cols=87  Identities=17%  Similarity=0.138  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 024890          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV---FRLSLILLGTATLQRFEAVNLVLAGILLFSS  223 (261)
Q Consensus       147 FltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv---~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytg  223 (261)
                      +.+..++=.+=++|-+++.++.|..++.  +.|+.=++.|=...-+   +-.++..++...+. =.|+.-.+|++=+|.|
T Consensus         5 ~v~sivly~aTaiD~lIiL~l~Far~~~--~k~~~~I~~GQyLGs~~lilaSL~~a~v~~fvp-~e~I~glLGLIPi~LG   81 (205)
T COG4300           5 VVSSIVLYIATAIDLLIILLLFFARRKS--RKDILHIYLGQYLGSVILILASLLFAFVLNFVP-EEWILGLLGLIPIYLG   81 (205)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhcc--cCcEEEEeHHHHHhHHHHHHHHHHHHHHHhhCc-HHHHHHHHhHHHHHHh
Confidence            4555666677889999999999996554  3344444444332222   11122222222222 3688888999999999


Q ss_pred             hhhhhccCCCCCC
Q 024890          224 FKLFASEEDDTDL  236 (261)
Q Consensus       224 iK~~~~~eee~d~  236 (261)
                      +|.+..+|+|+|.
T Consensus        82 ik~l~~~d~d~e~   94 (205)
T COG4300          82 IKVLILGDDDGEE   94 (205)
T ss_pred             hHHhhcccCcCch
Confidence            9987665444333

>TIGR00900 2A0121 H+ Antiporter protein

Probab=87.78  E-value=17  Score=31.34  Aligned_cols=57  Identities=14%  Similarity=0.009  Sum_probs=33.9

Q ss_pred             HHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024890          152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA  210 (261)
Q Consensus       152 lLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~  210 (261)
                      +.-..-+.-+....+++.+.  .|+++|.++.-+--.+.-+--++-..++..+++.+.|
T Consensus       101 l~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~  157 (365)
T TIGR00900       101 ILAIAQAFFTPAYQAMLPDL--VPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGI  157 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            33344455566666677664  6877666665444444445556666777777765544

>TIGR00901 2A0125 AmpG-related permease

Probab=84.24  E-value=30  Score=30.78  Aligned_cols=59  Identities=7%  Similarity=-0.156  Sum_probs=37.9

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024890          149 AGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE  209 (261)
Q Consensus       149 tgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~  209 (261)
                      .+.++...-+..+..+-+++.+.  .|+++|.++.-+-..+.-+.-++...++..+.+.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~a~~~~~--~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g  147 (356)
T TIGR00901        89 LAFLIAFFSATQDIALDAWRLEI--LSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF  147 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh--CCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            33455566666777778888775  588878777765555555555555666666666554

>PRK14013 hypothetical protein; Provisional

Probab=81.36  E-value=14  Score=36.20  Aligned_cols=77  Identities=19%  Similarity=0.212  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHH-HHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHH
Q 024890          145 SEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGI-AGAIVFRLSLI-LLGTATLQRFEAVNLVLAGILLFS  222 (261)
Q Consensus       145 ~eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI-~gAiv~RiIfI-~~G~~Ll~~f~~I~~ifG~fLLyt  222 (261)
                      ..|+..=+++.+-|+|++...-.+.+        +.-+...|. +|++.+|.+-+ ++-...+++|.++.+-....+.+.
T Consensus       223 ~~fl~lE~~D~~FS~DsV~aafAiT~--------d~~II~~g~~igil~lRslt~yfv~~g~L~~f~yLe~ga~~~I~~l  294 (338)
T PRK14013        223 GGFLYLEVLDASFSFDGVIGAFAITN--------DIFIIALGLGIGAMFVRSLTIYLVEKGTLDEYVYLEHGAHYAIGAL  294 (338)
T ss_pred             HHHHHHHHHHHHHHhccchhheeecC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccHHHHHHHH
Confidence            34777778999999999876554443        345566665 55567999844 345557888999999999999999


Q ss_pred             Hhhhhhc
Q 024890          223 SFKLFAS  229 (261)
Q Consensus       223 giK~~~~  229 (261)
                      |+||+.+
T Consensus       295 gvkmll~  301 (338)
T PRK14013        295 AVIMLLS  301 (338)
T ss_pred             HHHHHHh
Confidence            9999885

>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase

Probab=80.80  E-value=22  Score=38.81  Aligned_cols=126  Identities=12%  Similarity=0.070  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHhHHHhhcChhhHHHHHHHHHHHHHhhhhhHHHHHHHhccCCCChh-h-hhHH-----------------
Q 024890          122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVM-Y-QNRV-----------------  182 (261)
Q Consensus       122 ~~wV~LAllFg~~i~~~~G~~~a~eFltgylLE~sLSvDNafVfa~If~~FkvP~~-~-Q~Rv-----------------  182 (261)
                      ++-+.++++++.+++.+.|.....---..-++=+..++||+|+++-- ..-.-|.. - ++-+                 
T Consensus        97 V~~V~~Svv~S~Gl~s~lG~~~t~I~eViPFLvLaIGVDnifiLa~~-~~~t~~~~~v~eRIa~~l~~vGpSItltslte  175 (886)
T TIGR00920        97 LFTIFSSFVFSTAVIHFLGSELTGLNEALPFFLLLIDLSKASALAKF-ALSSNSQDEVRDNIARGMAILGPTITLDTVVE  175 (886)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHHHHHhHHHhhhchhhHHHHHhh-hhccCCCCCHHHHHHHHHHHhccceeHHHHHH
Confidence            56677888888888888887665432223344457799999999644 20001111 1 2222                 


Q ss_pred             -HHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhc---------------cCCCCCCCccHHH
Q 024890          183 -LSYGIAGAI----VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFAS---------------EEDDTDLSDNFIV  242 (261)
Q Consensus       183 -L~~GI~gAi----v~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~~---------------~eee~d~~~n~iv  242 (261)
                       +.+|+ |++    ..|....+.+.+++-.|-+-+.+|++.|-+.+-..-..               -++|+|.+.|+++
T Consensus       176 ~l~F~v-Gtls~mPAV~~Fc~ya~vAVl~nyllQmTfF~A~LsL~~~le~~~~h~~~~w~~~~~~~~~~~ee~~kpnpv~  254 (886)
T TIGR00920       176 TLVIGV-GTMSGVRRLEVLCCFGCMSVLANYFVFMTFFPACLSLVLELSRSGREGRPVWHLSKFALVLEEEEDQKPNPVV  254 (886)
T ss_pred             HHHHHH-hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhhhhhccCCCcHH
Confidence             22332 222    24555566666666556667777888887766542110               1345556778887


Q ss_pred             HHhhhcc
Q 024890          243 KTCQRFI  249 (261)
Q Consensus       243 r~irk~l  249 (261)
                      .-+|=++
T Consensus       255 qrvk~im  261 (886)
T TIGR00920       255 QRVKMIM  261 (886)
T ss_pred             HHhHHhh
Confidence            7665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00