Citrus Sinensis ID: 024893

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSNDAKSLVNLQPAYQVSQKLPSDSSFMEIQCGGGSGSTIPFTPLQGQINWNSSLTMSPTSSGIYDGSAAQAKKSNDILKDQSSQEE
Secondary Structure (PSIPRED)
ccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
macqalkleptkQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIiygpkvkghslkpetwtskeGELTSIIRKYEKKisavdhgqhrtlslskfdeskmrqvDDAATRACKKIcvgdfttwdqgmdsLSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSrklehdhsndakslvnlqpayqvsqklpsdssfmeiqcgggsgstipftplqgqinwnssltmsptssgiydgsaaqakksndilkdqssqee
Flexible Loop (DISEMBL)
macqalkleptkqekaCLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGpkvkghslkpetwtskegelTSIIRKYEKkisavdhgqhrtlslskfdeskmrQVDDAATRACKKICVGDFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRklntikrdqnvvnkatsrklehdhsndAKSLVNLQPAYQVSQKLPSDSSFMEIQCGGGSGSTIPFTPLQGQINWNSSLTMSPTSSGIYDGSAAQAKKSndilkdqssqee
Low Complexity Region (SEG)
MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSNDAKSLVNLQPAYQVSQKLPSDSSFMEIQCGGGSGSTIPFTPLQGQINWNSSLTMSPTSSGIYDGSAAQAKKSNDILKDQSSQEE
Disordered region (IsUnstruct)
****************CLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKISA************************AATRACKKICVGDFTTWDQGM**************************************************************************************IPFTPLQGQINW************************************
Disordered Region (DISOPRED)
MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETW****GELTSIIRKY********************DESKMRQ***********************MDSLSEDQLKMILSTMDDKLKDVDRKLNTI*********************************************************************************************************
Disordered Region (DISEMBL)
MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSNDAKSLVNLQPAYQVSQKLPSDSSFMEIQCGGGSGSTIPFTPLQGQINWNSSLTMSPTSSGIYD*********************
Disordered Region (DISPRO)
**CQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKIS****GQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLE*********LVNLQPAYQVSQKLPSDSSFME**C***SGSTIPF*********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSNDAKSLVNLQPAYQVSQKLPSDSSFMEIQCGGGSGSTIPFTPLQGQINWNSSLTMSPTSSGIYDGSAAQAKKSNDILKDQSSQEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
O82743	219	Agamous-like MADS-box pro	no	no	0.536	0.639	0.246	2e-08
Q7XJK5	320	Agamous-like MADS-box pro	no	no	0.222	0.181	0.403	4e-07
Q38838	221	Agamous-like MADS-box pro	no	no	0.448	0.529	0.276	7e-07
Q7XJK6	366	Agamous-like MADS-box pro	no	no	0.222	0.158	0.387	2e-06
Q0J466	249	MADS-box transcription fa	yes	no	0.647	0.678	0.253	3e-06
P0C5B0	249	MADS-box transcription fa	N/A	no	0.647	0.678	0.253	3e-06
Q9C6V4	464	Agamous-like MADS-box pro	no	no	0.210	0.118	0.393	8e-06
P0C5B2	233	MADS-box transcription fa	no	no	0.643	0.721	0.237	9e-06
O64645	214	MADS-box protein SOC1 OS=	no	no	0.134	0.163	0.571	1e-05
A2Z9Q7	233	MADS-box transcription fa	N/A	no	0.643	0.721	0.237	2e-05

>sp|O82743|AGL19_ARATH Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 14/154 (9%)

Query: 19  ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
            TF KR+N L+KKA+E + LCD EV ++I+ P+ K +     +       + + I +Y++
Sbjct: 19  VTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSS-------IAATIERYQR 71

Query: 79  KISAVDHGQHRTLSLSKFDESKM-RQVDDAATRACKKICVGDFTTWDQGMDSLSEDQLKM 137
           +I  + +   R       D S+  R      T+  +++ +       +G+D+ S ++L+ 
Sbjct: 72  RIKEIGNNHKRN------DNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQ 125

Query: 138 ILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKL 171
           + + +D  L  +  K   + R++    KA  R L
Sbjct: 126 LENQLDRSLSRIRAKKYQLLREEIEKLKAEERNL 159

Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XJK5|AGL90_ARATH Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana GN=AGL90 PE=1 SV=2

 Score = 55.5 bits (132), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 6  LKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSK 65
          +KL     E++   +F KRKN + KK +E +TLC V+ C +IY P +      PE+W S+
Sbjct: 4  VKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIP----VPESWPSR 59

Query: 66 EG 67
          EG
Sbjct: 60 EG 61

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38838|AGL14_ARATH Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2

 Score = 54.7 bits (130), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 17/134 (12%)

Query: 19  ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
            TF KR+N L+KKA+E + LCD EV +II+ P+ K +        S    +   + +Y+K
Sbjct: 19  VTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF------SSSSSIPKTVERYQK 72

Query: 79  KISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFTT---WDQGMDSLSEDQL 135
           +I  +     R       D S+  Q  D      +KI   + +T     +G+D+ S ++L
Sbjct: 73  RIQDLGSNHKRN------DNSQ--QSKDETYGLARKIEHLEISTRKMMGEGLDASSIEEL 124

Query: 136 KMILSTMDDKLKDV 149
           + + + +D  L  +
Sbjct: 125 QQLENQLDRSLMKI 138

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XJK6|AGL36_ARATH Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana GN=AGL36 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 6  LKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSK 65
          +KL     E++   +F KRK+ + KK +E +TLC V+ C +IY P +      PE+W S+
Sbjct: 4  VKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIP----VPESWPSR 59

Query: 66 EG 67
          EG
Sbjct: 60 EG 61

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J466|MADS7_ORYSJ MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 40/209 (19%)

Query: 19  ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
            TF KR+N L+KKAYE + LCD EV +II+  + K +             +T  + KY+K
Sbjct: 19  VTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEF------CSTQSMTKTLEKYQK 72

Query: 79  -----KISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFTTWDQGMDSLSED 133
                  +AV + +   L  S+ +  K++   +   R  + +   D       +DSL   
Sbjct: 73  CSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGED-------LDSLGIK 125

Query: 134 QLKMILSTMDDKLKDVDR--------KLNTIKRDQNVV---NKATSRKLEHDHSNDAK-- 180
           +L+ +   +D  LK V          +L  ++R + +V   N+   RKLE   SN  +  
Sbjct: 126 ELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLE--ESNHVRGQ 183

Query: 181 -------SLVNLQPAYQVSQKLPSDSSFM 202
                  +L+  +   +V Q L   + F 
Sbjct: 184 QVWEQGCNLIGYERQPEVQQPLHGGNGFF 212

Probable transcription factor. May be involved in the control of flowering time.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C5B0|MADS7_ORYSI MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 40/209 (19%)

Query: 19  ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
            TF KR+N L+KKAYE + LCD EV +II+  + K +             +T  + KY+K
Sbjct: 19  VTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEF------CSTQSMTKTLEKYQK 72

Query: 79  -----KISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFTTWDQGMDSLSED 133
                  +AV + +   L  S+ +  K++   +   R  + +   D       +DSL   
Sbjct: 73  CSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGED-------LDSLGIK 125

Query: 134 QLKMILSTMDDKLKDVDR--------KLNTIKRDQNVV---NKATSRKLEHDHSNDAK-- 180
           +L+ +   +D  LK V          +L  ++R + +V   N+   RKLE   SN  +  
Sbjct: 126 ELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLE--ESNHVRGQ 183

Query: 181 -------SLVNLQPAYQVSQKLPSDSSFM 202
                  +L+  +   +V Q L   + F 
Sbjct: 184 QVWEQGCNLIGYERQPEVQQPLHGGNGFF 212

Probable transcription factor.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9C6V4|AGL92_ARATH Agamous-like MADS-box protein AGL92 OS=Arabidopsis thaliana GN=AGL92 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
          ATF+KR   + KK +E TTLCD++ C +IY P        P  W S EG +  +I ++ +
Sbjct: 18 ATFRKRNAGIRKKLHELTTLCDIKACAVIYSP-----FENPTVWPSTEG-VQEVISEFME 71

Query: 79 K 79
          K
Sbjct: 72 K 72

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C5B2|MAD56_ORYSJ MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 17/185 (9%)

Query: 19  ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
            TF KR+N L+KKA+E + LCD EV +I++ P+ + +        +    L   I +Y  
Sbjct: 19  VTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEF------ASAPSLQKTIDRY-- 70

Query: 79  KISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFT---TWDQGMDSLSEDQL 135
           K    DH  ++T+      +  ++QV D      KK+   D +      + ++  S ++L
Sbjct: 71  KAYTKDHVNNKTI------QQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEEL 124

Query: 136 KMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSNDAKSLVNLQPAYQVSQKL 195
           + +   ++  L  +  K   +   Q    K   R L  D+ N      NL+ A  V+  +
Sbjct: 125 RGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDNENLRGKHRNLEAAALVANHM 184

Query: 196 PSDSS 200
            + ++
Sbjct: 185 TTTTA 189

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O64645|SOC1_ARATH MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/35 (57%), Positives = 26/35 (74%)

Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVK 53
           TF KR+N L+KKA+E + LCD EV +II+ PK K
Sbjct: 19 VTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGK 53

Transcription activator active in flowering time control. May integrate signals from the photoperiod, vernalization and autonomous floral induction pathways. Can modulates class B and C homeotic genes expression. When associated with AGL24, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development.

Arabidopsis thaliana (taxid: 3702)

>sp|A2Z9Q7|MAD56_ORYSI MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 17/185 (9%)

Query: 19  ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
            TF KR+N L+KKA+E + LCD EV +I++ P+ + +        +    L   I +Y  
Sbjct: 19  VTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEF------ASAPSLQKTIDRY-- 70

Query: 79  KISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFT---TWDQGMDSLSEDQL 135
           K    DH  ++T+      +  ++QV D      KK+   D +      + ++  S ++L
Sbjct: 71  KAYTKDHVNNKTI------QQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEEL 124

Query: 136 KMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSNDAKSLVNLQPAYQVSQKL 195
           + +   ++  L ++  K   +   Q    K   R L  D+ N      NL+ A  V+  +
Sbjct: 125 RGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNENLRGKHRNLEAAALVANHM 184

Query: 196 PSDSS 200
            + ++
Sbjct: 185 TTTTA 189

Probable transcription factor.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
224122246	390	predicted protein [Populus trichocarpa]	0.605	0.405	0.339	1e-20
224065525	406	predicted protein [Populus trichocarpa]	0.605	0.389	0.339	2e-20
255536889	386	conserved hypothetical protein [Ricinus	0.593	0.401	0.337	2e-18
357495775	315	MADS-box transcription factor [Medicago	0.632	0.523	0.301	1e-17
224054438	336	predicted protein [Populus trichocarpa]	0.540	0.419	0.335	4e-16
224060257	358	predicted protein [Populus trichocarpa]	0.597	0.435	0.312	2e-15
421957996	319	MADS-box protein AGL86, partial [Aquileg	0.605	0.495	0.337	3e-15
357444935	386	MADS-box transcription factor [Medicago	0.597	0.404	0.293	4e-15
255546493	338	mads box protein, putative [Ricinus comm	0.567	0.437	0.302	2e-14
357495777	347	Agamous-like MADS-box protein AGL36 [Med	0.597	0.449	0.287	2e-14

>gi|224122246|ref|XP_002318787.1| predicted protein [Populus trichocarpa] gi|222859460|gb|EEE97007.1| predicted protein [Populus trichocarpa]

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 7/165 (4%)

Query: 1   MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVK--GHSLK 58
           M  + +K+E  ++EK+ + TF+KRK  L+KKA EF+ LC V+ C+II+GPK K     + 
Sbjct: 1   MGQKRIKMELIRKEKSRMLTFRKRKAGLLKKASEFSILCGVDACVIIFGPKQKDDHQPVA 60

Query: 59  PETWTSKEGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVG 118
           PETW     E+  II +Y+           R   +S +   K +Q+D    R  K+I   
Sbjct: 61  PETWPPNSEEVRCIINRYKGSDQP-----RRCYQVSDYFVDKKKQIDSELARLHKQIIKA 115

Query: 119 DFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVV 163
            +  WD  ++SL  DQL++++  +D K+   D+KL +   +Q V+
Sbjct: 116 KYPAWDDRLNSLYADQLRVLVGHLDAKIDLADKKLGSFNANQYVM 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065525|ref|XP_002301840.1| predicted protein [Populus trichocarpa] gi|222843566|gb|EEE81113.1| predicted protein [Populus trichocarpa]

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 90/165 (54%), Gaps = 7/165 (4%)

Query: 1   MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVK--GHSLK 58
           M  + +K+E  ++EK+ + TF+KRK  L+KKA EF+ LC V+ C+II+GPK K     + 
Sbjct: 1   MGQKRIKMELIRKEKSRMLTFRKRKAGLLKKASEFSILCGVDACVIIFGPKEKDDHQPVA 60

Query: 59  PETWTSKEGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVG 118
           PETW     E+  II +Y+           R   +S +   K +Q+D    R  K+I   
Sbjct: 61  PETWPPSSEEVRCIINRYKGSDQP-----RRCYQVSDYFADKKKQIDSELARLHKQIIKA 115

Query: 119 DFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVV 163
            +  WD  ++ L  DQL++I+  +D K+   D+KL +   +Q V+
Sbjct: 116 KYPAWDDRLNRLYADQLRVIVGHLDAKIDLADKKLGSFNVNQYVM 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536889|ref|XP_002509511.1| conserved hypothetical protein [Ricinus communis] gi|223549410|gb|EEF50898.1| conserved hypothetical protein [Ricinus communis]

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 92/163 (56%), Gaps = 8/163 (4%)

Query: 1   MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKP- 59
           M    +K+E  ++E   + T++KRK SL+KK  EF+ LC VE C+II+ PK K   +K  
Sbjct: 1   MGHSRIKMELIEKESTRMLTYQKRKKSLVKKVSEFSILCGVEACLIIFAPKHKDQPVKKL 60

Query: 60  -ETWTSKEGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVG 118
              W     E  SII KY+K        Q R   +S +   K +++D   ++  K++   
Sbjct: 61  DTVWPPNSDEAKSIINKYKKT------DQARCYLVSHYFLDKKKKLDVEISKLQKQVYEA 114

Query: 119 DFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRDQN 161
            + +WD  +D+ SED+L+++L+ ++ KL+  D+KLN  + +QN
Sbjct: 115 IYPSWDIHLDNFSEDRLRVLLTRLESKLQVADQKLNLFQDNQN 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495775|ref|XP_003618176.1| MADS-box transcription factor [Medicago truncatula] gi|355493191|gb|AES74394.1| MADS-box transcription factor [Medicago truncatula]

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 98/169 (57%), Gaps = 4/169 (2%)

Query: 1   MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHS-LKP 59
           M    + +E  ++E++   T +KRK+ L+KKA EF+ LCDV+VC+I+Y P ++G   ++P
Sbjct: 1   MGRGRISMELIQKERSRKITLQKRKDGLIKKAKEFSILCDVDVCLILYAPNLEGQGYIEP 60

Query: 60  ETWTSKEGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGD 119
           ETW   + E+  +++KY +  + +D  + +T  + ++ + +M++V+    +  K+     
Sbjct: 61  ETWPKDKREVQRVLQKYYE--TTIDR-RPKTYDVQEYFKERMKKVELEIYKVRKERLKMK 117

Query: 120 FTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATS 168
           + TWD+  +S   +QL+  +  +D KL   D+K+N  K +   VN   S
Sbjct: 118 YPTWDESYNSFGNEQLRSFVRFLDSKLDACDQKMNMRKDESYKVNNLIS 166

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054438|ref|XP_002298260.1| predicted protein [Populus trichocarpa] gi|222845518|gb|EEE83065.1| predicted protein [Populus trichocarpa]

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 5/146 (3%)

Query: 6   LKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSK 65
           L +E  + E++ + T+ KRK  L KKA EF  LC V+ C+II GPK+  H +  ETW + 
Sbjct: 6   LTMELIRNERSRMITYHKRKKGLTKKAREFQILCGVDACVIILGPKLNNHPVDVETWPTD 65

Query: 66  EGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFTTWDQ 125
             E+  II ++  + +     + +T  LS F E++ +++DD   +  K      F  WD 
Sbjct: 66  RIEVRRIINRFRSEGT----DRKKTQDLSYFFEARKKKLDDEIAKLRKACMEAKFPAWDN 121

Query: 126 GMDSLSEDQLKMILSTMDDKLKDVDR 151
            ++ LS +QL+++    + KL DV R
Sbjct: 122 RLNLLSLEQLRVLAGVFESKL-DVAR 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060257|ref|XP_002300109.1| predicted protein [Populus trichocarpa] gi|222847367|gb|EEE84914.1| predicted protein [Populus trichocarpa]

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 7/163 (4%)

Query: 8   LEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGH-SLKPETWTSKE 66
           +E  + EK+ + TF+KRK +L+KK  +F+ LC V+ C+II+GP      +   ETW S  
Sbjct: 1   MESIRNEKSRMLTFRKRKTTLLKKVSDFSILCGVDACVIIFGPNQNDQPAATAETWPSNS 60

Query: 67  GELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFTTWDQG 126
            E+  II +Y+    A D  + +    S +  +K +++D    +  +++    +  WD  
Sbjct: 61  DEVRCIINRYK----ACDQPR-KCYRGSDYFTAKKKKIDAEFAKLHRQVLKAKYPAWDDR 115

Query: 127 MDSLSEDQLKMILSTMDDKL-KDVDRKLNTIKRDQNVVNKATS 168
           + SLS DQL+++L  +D KL +  D+ L+  K  Q V++   S
Sbjct: 116 LSSLSSDQLRVLLGQLDTKLIETADKTLSIFKEYQYVMDNDAS 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|421957996|gb|AFX72875.1| MADS-box protein AGL86, partial [Aquilegia coerulea]

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 94/172 (54%), Gaps = 14/172 (8%)

Query: 1   MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSL--K 58
           M    L L    +E A  ATF +RK  L KK YEF TLC V+ C+IIYGP  + ++   K
Sbjct: 1   MGRAKLDLRLISKESARNATFVRRKKGLEKKIYEFATLCGVDACMIIYGPNNRNNACMSK 60

Query: 59  PETWTSKEGELTSII---RKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKI 115
           PETW   E E+  II   +KYEK        + R+L L+     + +++ D   +  KK 
Sbjct: 61  PETWPRNEDEVYRIIDNYKKYEK--------EKRSLGLADSFSVQKKKLGDELAKLRKKN 112

Query: 116 CVGDFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIK-RDQNVVNKA 166
                 +W+  +  LS+DQ++ +L  +D K++ ++ K+ +I+  +QN++ +A
Sbjct: 113 DEISQQSWEDRIYDLSKDQMEQLLPMIDSKIEMINAKMISIEMMNQNMIQEA 164

Source: Aquilegia coerulea

Species: Aquilegia coerulea

Genus: Aquilegia

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444935|ref|XP_003592745.1| MADS-box transcription factor [Medicago truncatula] gi|355481793|gb|AES62996.1| MADS-box transcription factor [Medicago truncatula]

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 90/160 (56%), Gaps = 4/160 (2%)

Query: 1   MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSL-KP 59
           M    + +E  ++EK+  +TF+KRK+ LMKK  EF+ LCDV+VC+++Y P   G    +P
Sbjct: 1   MGRGRISMELIQKEKSRKSTFQKRKDGLMKKVNEFSILCDVDVCVVLYAPNFVGRGFAEP 60

Query: 60  ETWTSKEGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGD 119
           ETW   +  +  I++KY    S     + +   + ++ + ++R+++   T+  K+     
Sbjct: 61  ETWPKDKRAVERILQKYYNTTS---DRRPKIYDVQEYFKERIRKLEFEITKVRKEKLKMM 117

Query: 120 FTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRD 159
           + TW++  +SL  +QL +  S ++ KL   ++K + +K D
Sbjct: 118 YPTWNESFNSLGAEQLILFASKLEAKLDACNQKKHMLKED 157

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546493|ref|XP_002514306.1| mads box protein, putative [Ricinus communis] gi|223546762|gb|EEF48260.1| mads box protein, putative [Ricinus communis]

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 4/152 (2%)

Query: 6   LKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSK 65
           L +E    EK+ + T+ KRK  L KK  EF  LCDV+ CIII+ PK    S   ETW S 
Sbjct: 6   LNMELISNEKSRMITYHKRKKGLTKKVQEFHILCDVDACIIIFSPKFNNRSFDIETWPSN 65

Query: 66  EGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFTTWDQ 125
             E+  II +Y  +    D+ + R   LS F  ++ +++D+   +  K      +  WD 
Sbjct: 66  RYEMRRIINRYRSQ----DNDRKRNQDLSHFFIARKKKIDEDIAKMRKAHMEAKYPAWDN 121

Query: 126 GMDSLSEDQLKMILSTMDDKLKDVDRKLNTIK 157
            ++ L   +L ++ S +  K++    ++  I+
Sbjct: 122 RINLLQLHELSVLASVLQSKIEVATARVMKIR 153

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495777|ref|XP_003618177.1| Agamous-like MADS-box protein AGL36 [Medicago truncatula] gi|355493192|gb|AES74395.1| Agamous-like MADS-box protein AGL36 [Medicago truncatula]

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 89/160 (55%), Gaps = 4/160 (2%)

Query: 1   MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSL-KP 59
           M    + +E  ++EK+   + + RK  LM K  E + LCDV+ C+I+Y P  +G    +P
Sbjct: 1   MGRGRVSVEFIQKEKSRKISLQTRKIGLMTKVEELSILCDVDACVILYAPNFEGQGYDEP 60

Query: 60  ETWTSKEGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGD 119
           ETW     EL  I+++Y    + +D  + +T ++ ++ + +M++V+   ++  K+     
Sbjct: 61  ETWPKDTKELQRILQRYYN--TTIDR-RLKTYNVQEYFKERMKKVEFEISKVRKEKFKMK 117

Query: 120 FTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRD 159
           + TWD+  + L ++QL++  S +D KL   + K+N +K D
Sbjct: 118 YQTWDESFNFLEDEQLRLFASILDFKLDACNLKMNMLKGD 157

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2154588	294	AGL82 "AGAMOUS-like 82" [Arabi	0.582	0.517	0.320	2.3e-16
TAIR|locus:2162137	277	AT5G55690 [Arabidopsis thalian	0.555	0.523	0.292	1.4e-13
TAIR|locus:2127213	219	AGL19 "AGAMOUS-like 19" [Arabi	0.659	0.785	0.231	7.9e-10
TAIR|locus:2152511	321	AGL80 "AGAMOUS-like 80" [Arabi	0.762	0.619	0.252	8.1e-09
TAIR|locus:2093979	386	AGL103 "AGAMOUS-like 103" [Ara	0.777	0.525	0.277	1.7e-08
TAIR|locus:2137070	221	AGL14 "AGAMOUS-like 14" [Arabi	0.532	0.628	0.253	2.8e-08
TAIR|locus:2146774	218	AT5G26630 [Arabidopsis thalian	0.582	0.697	0.253	3.4e-08
TAIR|locus:2054543	329	AGL46 "AGAMOUS-like 46" [Arabi	0.766	0.607	0.245	3.5e-08
TAIR|locus:2009457	163	AGL87 "AGAMOUS-like 87" [Arabi	0.532	0.852	0.26	2.5e-07
TAIR|locus:2184118	196	FLC "FLOWERING LOCUS C" [Arabi	0.693	0.923	0.230	3.2e-07

TAIR|locus:2154588 AGL82 "AGAMOUS-like 82" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 52/162 (32%), Positives = 85/162 (52%)

Query:     1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSL--- 57
             M  + + L+    +K  + T+KKRK SL KKA EF+TLC VE C+I+YGP  K   +   
Sbjct:     1 MVPKVVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGP-TKATDVVIS 59

Query:    58 KPETWTSKEGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICV 117
             +PE W   E ++ +IIRKY+  +S     +    +    D  K  +V     +  K+   
Sbjct:    60 EPEIWPKDETKVRAIIRKYKDTVSTSCRKETNVETFVN-DVGKGNEV--VTKKRVKR--E 114

Query:   118 GDFTTWDQGMDSLSEDQLKMILSTMDDKLKD-VDRKLNTIKR 158
               +++W++ +D  S +QL  I   +D KL + V R+  ++ R
Sbjct:   115 NKYSSWEEKLDKCSREQLHGIFCAVDSKLNEAVTRQERSMFR 156

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2162137 AT5G55690 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 46/157 (29%), Positives = 79/157 (50%)

Query:     1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSL--K 58
             M  + +K+     EK  + T+KKRK  L KKA EF+TLC V+ C+I+YGP   G  +  +
Sbjct:     1 MGRKMVKMTRITNEKTRITTYKKRKACLYKKASEFSTLCGVDTCVIVYGPSRAGDEMVME 60

Query:    59 PETWTSKEGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVG 118
             PE W     ++  I+ KY    S+      +T ++ +  E    +V+   T A K     
Sbjct:    61 PELWPKDGSKVREILTKYRDTASS---SCTKTYTVQECLEKNNTKVEKP-TIATK----- 111

Query:   119 DFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNT 155
              + TWD+ +D  S + L  +   +++K+++   +  T
Sbjct:   112 -YPTWDKKLDQCSLNDLYAVFMAVENKIQEATNRNQT 147

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2127213 AGL19 "AGAMOUS-like 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 7.9e-10, P = 7.9e-10
 Identities = 43/186 (23%), Positives = 88/186 (47%)

Query:    20 TFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKK 79
             TF KR+N L+KKA+E + LCD EV ++I+ P+ K +     +       + + I +Y+++
Sbjct:    20 TFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSS-------IAATIERYQRR 72

Query:    80 ISAVDHGQHRTLSLSKFDESKM-RQVDDAATRACKKICVGDFTTWDQGMDSLSEDQLKMI 138
             I  + +   R       D S+  R      T+  +++ +       +G+D+ S ++L+ +
Sbjct:    73 IKEIGNNHKRN------DNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQL 126

Query:   139 LSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSNDAKSLVNLQPAYQVSQKLPSD 198
              + +D  L  +  K   + R++    KA  R L  ++ +  +  + +  A   S +    
Sbjct:   127 ENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGMGTATIASSQSTLS 186

Query:   199 SSFMEI 204
             SS + I
Sbjct:   187 SSEVNI 192

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010048 "vernalization response" evidence=RCA;IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

TAIR|locus:2152511 AGL80 "AGAMOUS-like 80" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 8.1e-09, P = 8.1e-09
 Identities = 53/210 (25%), Positives = 90/210 (42%)

Query:     1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPE 60
             M  + +KL     + +  ATFKKRK  LMKK +E +TLC +  C IIY P    +   PE
Sbjct:     1 MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSP----YDTNPE 56

Query:    61 TWTSKEG--ELTSIIR---KYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKI 115
              W S  G   + S  R   + ++    VD        ++K  E+  RQ  D+      ++
Sbjct:    57 VWPSNSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEV 116

Query:   116 CVGDFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDH 175
                     +  M  L+   L  +   ++  LKDV+R++  ++     + +++S  +    
Sbjct:   117 MF-QCLIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILRNSGTEIGESSSVAVAASE 175

Query:   176 SN-DAKSLVNLQPAYQVSQKLPSDSSFMEI 204
              N    +LV          ++ S SSF  +
Sbjct:   176 GNIPMPNLVATTAPTTTIYEVGSSSSFAAV 205

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0043078 "polar nucleus" evidence=IDA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2093979 AGL103 "AGAMOUS-like 103" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 63/227 (27%), Positives = 104/227 (45%)

Query:    23 KRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKISA 82
             KR+ ++ KKA E + LCD++VC+I YG    G  LK  TW  +  ++ +I R+Y + +S 
Sbjct:    38 KRQQTVFKKAKELSILCDIDVCVICYGSN--GE-LK--TWPEEREKVKAIARRYGE-LSE 91

Query:    83 VDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVG-----DFTTWDQGMDSLSEDQLKM 137
                 +  ++ L +F E KM + DD      KKI V       +  WD   D+ S +QL  
Sbjct:    92 TKR-RKGSVDLHEFLE-KMNK-DDPEKEEKKKIKVRRVPKVKYPVWDPRFDNYSVEQLMG 148

Query:   138 ILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSNDAKSLVNLQPAYQVSQKLPS 197
             ++ +++  L  +        R   VV     R++++ +  + + L+      Q+ Q    
Sbjct:   149 LVQSLERNLTRIQH------RTCAVVEAQGQRRVQYTNMAN-QELMMANTMNQLQQHSNQ 201

Query:   198 DSSFMEIQCGGGSGSTIPFTPLQGQINWNSSLTMSPTSSGIYDGSAA 244
              S ++    G G+ S IP + L    N   SL   P    IY  S A
Sbjct:   202 VSMYLWNH-GNGAFSQIPVSALAS--NQTQSLAPIPPELMIYPNSDA 245

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2137070 AGL14 "AGAMOUS-like 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 39/154 (25%), Positives = 74/154 (48%)

Query:    20 TFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKK 79
             TF KR+N L+KKA+E + LCD EV +II+ P+ K +        S    +   + +Y+K+
Sbjct:    20 TFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF------SSSSSIPKTVERYQKR 73

Query:    80 ISAVDHGQHRTLSLSKFDESKMRQVDDA--ATRACKKICVGDFTTWDQGMDSLSEDQLKM 137
             I   D G +      K +++  +  D+     R  + + +       +G+D+ S ++L+ 
Sbjct:    74 IQ--DLGSNH-----KRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQ 126

Query:   138 ILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKL 171
             + + +D  L  +  K   + R++    K   R L
Sbjct:   127 LENQLDRSLMKIRAKKYQLLREETEKLKEKERNL 160

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2146774 AT5G26630 [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 42/166 (25%), Positives = 84/166 (50%)

Query:     1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPE 60
             M  Q +K+   + E A  +TFKKRK  L+KKA E   LC V +  ++  P    + L PE
Sbjct:     1 MTRQKVKMTFIENETARKSTFKKRKKGLLKKAQELGILCGVPIFAVVNSP----YELNPE 56

Query:    61 TWTSKEGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACK------- 113
              W S+E     ++ ++ K +S +D  + + ++   F + ++ +  ++  +  K       
Sbjct:    57 VWPSREAA-NQVVSQW-KTMSVMDKTK-KMVNQETFLQQRITKATESWKKLRKENKELEM 113

Query:   114 KICVGDFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRD 159
             K  + D  +    + S+ + +L+     ++ +LKDV+R++  +KR+
Sbjct:   114 KNIMFDCLSGKTLVSSIEKTELRDFGYVIEQQLKDVNRRIEILKRN 159

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2054543 AGL46 "AGAMOUS-like 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 56/228 (24%), Positives = 101/228 (44%)

Query:     1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPE 60
             MA + L L     ++    +FK+R+   +KK  +   LCDV  C ++Y P     +  P+
Sbjct:     1 MARKKLNLTYIFNDRMRKRSFKQRREGFLKKLNDLKVLCDVNACAVVYNP----FNSNPD 56

Query:    61 TWTSKEGELTSIIRKYE------KKISAVDHGQHRTLSLSKFD-ESKMRQVDDAATRACK 113
              W SK  E+ +II+K+E      KK+ +V+H +   L +SK + +SK   V++  T  C 
Sbjct:    57 VWPSKS-EVNNIIKKFEMLPETQKKVKSVNHEEFLNLYISKVEKQSKKLIVENKET--CL 113

Query:   114 KICVGDFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEH 173
             K  +      + G D +  D  ++      D  K +D  L  +   +NV     + ++  
Sbjct:   114 KEVMFKCLGGNMG-DFVMNDNDRL------DLCKFIDHYLRNLYHHKNVTLNNPNFEI-- 164

Query:   174 DHSNDAKSLVNLQPAYQVSQKLPS--DSSFMEIQCGGGSGSTIPFTPL 219
                 ++ SL+++ P         +  D     +    GS S+   +PL
Sbjct:   165 ---GESSSLMDMAPTATTGNMATTVVDEGMTPLLIAEGSSSSFLNSPL 209

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2009457 AGL87 "AGAMOUS-like 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 39/150 (26%), Positives = 66/150 (44%)

Query:    20 TFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK- 78
             TF+KRK+ L+KK YE T LC +  C IIY     G    PE W +   E+ SI+ +  + 
Sbjct:    20 TFRKRKDGLLKKIYELTVLCGLPACAIIYSEYKDG----PELWPNLN-EVRSILNRLSEL 74

Query:    79 ---KISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFTTWDQGMDSLSEDQL 135
                K +     Q   ++    D  K  + +   TRA K   +      D   D+   ++L
Sbjct:    75 PVEKQTKYMMDQKDLMNKMIQDAEKKLEKEKMHTRAMKLGLMAGSN--DLITDTDCSEEL 132

Query:   136 KMILSTMDDKLKDVDRKLNTIKRDQNVVNK 165
                   +D KLK +  ++  ++    ++ +
Sbjct:   133 ARAADVVDKKLKAIRERIKAVEAGAPIIKR 162

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2184118 FLC "FLOWERING LOCUS C" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 47/204 (23%), Positives = 100/204 (49%)

Query:     1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPE 60
             M  + L+++  + + +   TF KR+N L++KA + + LCD  V +++     K +S    
Sbjct:     1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSF--- 57

Query:    61 TWTSKEGELTSIIRKYEKK----ISAVDHGQHRTLSLSKFDESKMRQVDDAATRA-CKKI 115
                S    L  I+ +Y K+    + A+DH Q + L+     E  +  VD     +  K +
Sbjct:    58 ---SSGDNLVKILDRYGKQHADDLKALDH-QSKALNYGSHYEL-LELVDSKLVGSNVKNV 112

Query:   116 CVGDFTTWDQGMDS-LSEDQLKM--ILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLE 172
              +      ++ +++ LS  + K   ++  + + LK+ ++ L    +++N V    + ++E
Sbjct:   113 SIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKML----KEENQV---LASQME 165

Query:   173 HDHSNDAKSLVNLQPAYQVSQKLP 196
             ++H   A++ + + PA Q+S  LP
Sbjct:   166 NNHHVGAEAEMEMSPAGQISDNLP 189

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0010048 "vernalization response" evidence=IEP;RCA

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0043234 "protein complex" evidence=IDA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XII001064 hypothetical protein (390 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	2e-14
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	7e-14
smart00432	59	smart00432, MADS, MADS domain	3e-11
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	2e-10
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	1e-09

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 66.5 bits (163), Expect = 2e-14
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
           TF KR+  L KKA E +TLC  EV +I+Y P  K +      W S E E   +I ++E 
Sbjct: 18 VTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLY----VFWPSSEVE--GVISRFEV 71

Query: 79 K 79
           
Sbjct: 72 L 72

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 64.1 bits (157), Expect = 7e-14
 Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 4/46 (8%)

Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTS 64
           TF KR+N L KKA E + LCD EV +I++ P  K +    E W+S
Sbjct: 18 VTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLY----EFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 57.2 bits (139), Expect = 3e-11
 Identities = 18/37 (48%), Positives = 25/37 (67%)

Query: 20 TFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHS 56
          TF KR+N L KKA+E + LCD EV +I++ P  K + 
Sbjct: 19 TFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYE 55

Length = 59

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 54.3 bits (131), Expect = 2e-10
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 20 TFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPK 51
          TF KR+N + KKA+E + LCD EV +II+   
Sbjct: 12 TFSKRRNGIFKKAHELSVLCDAEVAVIIFSST 43

Length = 51

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 53.3 bits (129), Expect = 1e-09
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 7/59 (11%)

Query: 20 TFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
          TF KR+N L+KKA+E + LCD EV +II+    K +       +S   E   II +Y+K
Sbjct: 19 TFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEF-----SSPSME--KIIERYQK 70

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.96
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.95
smart00432	59	MADS MADS domain.	99.94
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.94
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.91
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.67
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.46
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.26
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	81.43
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	81.29

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=9.3e-35  Score=248.44  Aligned_cols=154  Identities=20%  Similarity=0.310  Sum_probs=109.0

Q ss_pred             CCcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhhh
Q 024893            1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKI   80 (261)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~   80 (261)
                      |||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+    .||++ .+|.+|++||....
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~----~~~~~-~~~~~v~~~~~~~~   75 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYE----FGSSD-ESVDAVVDRFLNLT   75 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccc----cCCcc-hhHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999976    25443 35999999999876


Q ss_pred             cccccCCccccccchhHHHH-HHH--------------HHHHHHHhchhcccc------cccccCCCCCCCCH-HHHHHH
Q 024893           81 SAVDHGQHRTLSLSKFDESK-MRQ--------------VDDAATRACKKICVG------DFTTWDQGMDSLSE-DQLKMI  138 (261)
Q Consensus        81 ~~~d~~~~k~~~l~~~~~~~-~~k--------------Lk~el~kl~ke~~~l------~~~~~gedL~~Ls~-eEL~~L  138 (261)
                      .....  ++..+...+.... ...              .......+.+....+      ...+.++++.+++. .+|..+
T Consensus        76 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~  153 (195)
T KOG0014|consen   76 EPSRK--KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSL  153 (195)
T ss_pred             hhhhc--ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcch
Confidence            63111  1111222221110 000              111111122211111      12345899999999 999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhH
Q 024893          139 LSTMDDKLKDVDRKLNTIKRDQN  161 (261)
Q Consensus       139 E~~LE~~L~~Vr~Rk~~L~~~q~  161 (261)
                      +..|+..+..++........+++
T Consensus       154 ~~~l~~~~~~~~~~~~~~~~~~~  176 (195)
T KOG0014|consen  154 ESQLESSLHNSRSSKSKPLSDSN  176 (195)
T ss_pred             hhHHHHhhcCCCCCCCcCCcchh
Confidence            99999999988887666554433

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=3.1e-31  Score=195.03  Aligned_cols=73  Identities=32%  Similarity=0.534  Sum_probs=69.2

Q ss_pred             CcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhhhc
Q 024893            2 ACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKIS   81 (261)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~~   81 (261)
                      ||+||+|++|+|+.+|++||+|||.||||||+||||||||+||||||||+|++|.     |+++  ++++||+||...++
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~-----f~s~--s~~~vl~ry~~~~~   73 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYE-----FSSP--SMEKIIERYQKTSG   73 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEE-----ecCC--CHHHHHHHHHhccc
Confidence            8999999999999999999999999999999999999999999999999999765     8875  48999999999877

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.95  E-value=4.4e-29  Score=186.18  Aligned_cols=74  Identities=32%  Similarity=0.560  Sum_probs=67.9

Q ss_pred             CcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhhhc
Q 024893            2 ACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKIS   81 (261)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~~   81 (261)
                      ||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+.+    ..||++ . +..+|+||...+.
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~----~~~~~~-~-~~~~l~~~~~~~~   74 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLY----VFWPSS-E-VEGVISRFEVLSA   74 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcc----eecCcH-H-HHHHHHHHhhcCH
Confidence            899999999999999999999999999999999999999999999999999974    445543 3 9999999998876

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.94  E-value=4e-28  Score=169.00  Aligned_cols=55  Identities=33%  Similarity=0.565  Sum_probs=53.6

Q ss_pred             CcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCC
Q 024893            2 ACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHS   56 (261)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~   56 (261)
                      ||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|++|.
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~   55 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYE   55 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeee
Confidence            8999999999999999999999999999999999999999999999999999854

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.94  E-value=9.4e-28  Score=167.23  Aligned_cols=55  Identities=33%  Similarity=0.562  Sum_probs=53.5

Q ss_pred             CcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCC
Q 024893            2 ACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHS   56 (261)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~   56 (261)
                      ||+||+|++|+|+..|++||+|||.||||||+||||||||+||+|||||+|++|.
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~   55 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYE   55 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCccc
Confidence            7999999999999999999999999999999999999999999999999999755

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.91  E-value=1.6e-26  Score=156.01  Aligned_cols=51  Identities=37%  Similarity=0.601  Sum_probs=45.8

Q ss_pred             eeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccC
Q 024893            9 EPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTS   64 (261)
Q Consensus         9 k~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps   64 (261)
                      |+|+|++.|++||+|||.||||||+|||+||||+||||||||+|++|.     |||
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~-----f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYT-----FPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEE-----EES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEE-----ecC
Confidence            689999999999999999999999999999999999999999999865     985

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.67  E-value=1.3e-17  Score=147.75  Aligned_cols=55  Identities=29%  Similarity=0.397  Sum_probs=53.1

Q ss_pred             CcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCC
Q 024893            2 ACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHS   56 (261)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~   56 (261)
                      ||+||+|++|+|+..|.|||||||.||||||+|||||+|.+|-|+|.|.+|-+|-
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyT  117 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT  117 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEE
Confidence            7999999999999999999999999999999999999999999999999998754

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.46  E-value=3.9e-13  Score=103.60  Aligned_cols=86  Identities=15%  Similarity=0.181  Sum_probs=80.3

Q ss_pred             chhHHHHHHHHHHHHHHhchhcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhh
Q 024893           94 SKFDESKMRQVDDAATRACKKICVGDFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEH  173 (261)
Q Consensus        94 ~~~~~~~~~kLk~el~kl~ke~~~l~~~~~gedL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~~~q~~~~kkk~~~lee  173 (261)
                      .+.+..++.+|+.+++.|+...++++    |++|++|+++||.+||+.|+.+|..||+||.+++.+++..+++|+..+.+
T Consensus        14 ~e~~~~e~~~L~~~~~~L~~~~R~~~----GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~   89 (100)
T PF01486_consen   14 HEELQQEIAKLRKENESLQKELRHLM----GEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEE   89 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccc----cccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46688889999999999999988887    99999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHH
Q 024893          174 DHSNDAKSLV  183 (261)
Q Consensus       174 ~n~~L~~~l~  183 (261)
                      +|..|...+.
T Consensus        90 en~~L~~~~~   99 (100)
T PF01486_consen   90 ENNQLRQKIE   99 (100)
T ss_pred             HHHHHHHHhc
Confidence            9999987653

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.26  E-value=2e-12  Score=119.66  Aligned_cols=56  Identities=23%  Similarity=0.360  Sum_probs=54.5

Q ss_pred             CCcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCC
Q 024893            1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHS   56 (261)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~   56 (261)
                      |||+||.|.+|+|+.+|.|||+||+.||+|||.||+||.+.+|.++|.|.+|++|.
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~t  136 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHT  136 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceee
Confidence            78999999999999999999999999999999999999999999999999999865

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=81.43  E-value=4  Score=28.36  Aligned_cols=33  Identities=9%  Similarity=0.282  Sum_probs=28.0

Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024893          122 TWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLN  154 (261)
Q Consensus       122 ~~gedL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~  154 (261)
                      ..|+||+.||++||..-...|+.-+.+++.-+.
T Consensus        13 ~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~   45 (59)
T PF06698_consen   13 EIGEDLSLLSVEELEERIALLEAEIARLEAAIA   45 (59)
T ss_pred             ccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            348999999999999999999998888876543

The function of this family is unknown.

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=81.29  E-value=0.36  Score=27.12  Aligned_cols=14  Identities=14%  Similarity=0.230  Sum_probs=11.1

Q ss_pred             eeeeeecCCCCCCC
Q 024893           43 VCIIIYGPKVKGHS   56 (261)
Q Consensus        43 ValIIfS~~Gkl~~   56 (261)
                      -.+.+|||+|++|.
T Consensus         3 ~~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    3 RSITTFSPDGRLFQ   16 (23)
T ss_dssp             SSTTSBBTTSSBHH
T ss_pred             CCceeECCCCeEEe
Confidence            35679999999964

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	261
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		1e-04
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		1e-04
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		1e-04
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		1e-04
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		2e-04
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		5e-04

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIY 48
           TF KRK  LMKKAYE + LCD E+ +II+
Sbjct: 18 VTFTKRKFGLMKKAYELSVLCDCEIALIIF 47

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYG 49
           TF KRK  LMKKAYE + LCD E+ +II+ 
Sbjct: 19 VTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYG 49
           TF KRK  LMKKAYE + LCD E+ +II+ 
Sbjct: 18 VTFTKRKFGLMKKAYELSVLCDCEIALIIFN 48

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYG 49
           TF KRK  LMKKAYE + LCD E+ +II+ 
Sbjct: 18 VTFTKRKFGLMKKAYELSVLCDCEIALIIFN 48

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYG 49
           TF KRK  LMKKAYE + LCD E+ +II+ 
Sbjct: 18 VTFTKRKFGLMKKAYELSVLCDCEIALIIFN 48

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 14 EKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYG 49
          E+    TF KRK  LMKKAYE + L D E+ +II+ 
Sbjct: 13 ERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFN 48

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	2e-09
1egw_A	77	MADS box transcription enhancer factor 2, polypept	2e-09
1hbx_A	92	SRF, serum response factor; gene regulation, trans	3e-09
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	7e-09
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	9e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 19/34 (55%), Positives = 23/34 (67%)

Query: 20 TFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVK 53
          TF KRK  LMKKAYE + LCD E+ +II+    K
Sbjct: 19 TFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK 52

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 20 TFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
          TF KRK  LMKKAYE + LCD E+ +II+    K        + S   ++  ++ KY +
Sbjct: 19 TFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-----YAS--TDMDKVLLKYTE 70

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 20 TFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKK 79
          TF KRK  +MKKAYE +TL   +V +++       ++           +L  +I     K
Sbjct: 29 TFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF-------ATRKLQPMITSETGK 81

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score = 51.4 bits (123), Expect = 7e-09
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 20 TFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKK 79
          TF KRK  +MKKAYE +TL   +V +++       +     T+ ++  +L  +I     K
Sbjct: 28 TFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVY-----TFATR--KLQPMITSETGK 80

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score = 51.0 bits (122), Expect = 9e-09
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 20 TFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKK 79
          TF KRK+ +MKKA+E + L   +V +++       ++               I+ + E +
Sbjct: 35 TFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK-------FEPIVTQQEGR 87

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 42/259 (16%), Positives = 68/259 (26%), Gaps = 85/259 (32%)

Query: 6   LKLEPTKQEKACLATFKKRKNSLM-------KKAYE-FTTLC-------DVEVCIIIYGP 50
           L++   + E   L   K  +N L+        KA+  F   C         +V   +   
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 51  KVKGHSLKPETWTSKEGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATR 110
                SL   + T    E+ S++ KY              L     D    R+V     R
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKY--------------LDCRPQDLP--REVLTTNPR 328

Query: 111 ACKKI---CVGDFTTWDQGMDSLSEDQLKMILSTMDDKL----------------KDVDR 151
               I         TWD     ++ D+L  I+ +  + L                     
Sbjct: 329 RLSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 152 KLNTIKR---------DQNVVNKATSRKLE-----------HDH--------SNDA---K 180
               +              VVNK     L                        N+    +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 181 SLVNLQPAYQVSQKLPSDS 199
           S+V+    Y + +   SD 
Sbjct: 448 SIVD---HYNIPKTFDSDD 463

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	99.97
1hbx_A	92	SRF, serum response factor; gene regulation, trans	99.97
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	99.97

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=2.7e-36  Score=219.71  Aligned_cols=73  Identities=32%  Similarity=0.555  Sum_probs=68.4

Q ss_pred             CcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhhhc
Q 024893            2 ACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKIS   81 (261)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~~   81 (261)
                      ||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+     |+|+  +|++||+||+..++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~-----~~s~--~~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-----YAST--DMDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEE-----EESS--CHHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEee-----CCCC--CHHHHHHHHHhccC
Confidence            8999999999999999999999999999999999999999999999999999977     9874  69999999998765

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=9.1e-36  Score=222.23  Aligned_cols=74  Identities=31%  Similarity=0.548  Sum_probs=70.6

Q ss_pred             CcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhhhc
Q 024893            2 ACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKIS   81 (261)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~~   81 (261)
                      ||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+     |||+  +|..||+||+..++
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~-----f~s~--~~~~il~rY~~~~~   73 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-----YAST--DMDKVLLKYTEYNE   73 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-----EESS--CHHHHHHHHHHCCS
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEE-----eCCC--CHHHHHHHHHhcCc
Confidence            8999999999999999999999999999999999999999999999999999877     9884  69999999999877


Q ss_pred             c
Q 024893           82 A   82 (261)
Q Consensus        82 ~   82 (261)
                      .
T Consensus        74 ~   74 (90)
T 3p57_A           74 P   74 (90)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=99.97  E-value=3.5e-34  Score=217.18  Aligned_cols=72  Identities=19%  Similarity=0.357  Sum_probs=68.1

Q ss_pred             CCcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhh
Q 024893            1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKK   79 (261)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~   79 (261)
                      |||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+     |+|+  ++..||+||...
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-----f~sp--s~~~il~r~~G~   87 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYT-----FSTP--KFEPIVTQQEGR   87 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-----EECT--TTTHHHHSHHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcce-----ecCC--CHHHHHHHhhCC
Confidence            89999999999999999999999999999999999999999999999999999877     9886  588999998654

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=99.97  E-value=6.3e-34  Score=213.12  Aligned_cols=71  Identities=25%  Similarity=0.373  Sum_probs=66.6

Q ss_pred             CCcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHh
Q 024893            1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK   78 (261)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~   78 (261)
                      |||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+     |+++  +|..||++|..
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~-----f~s~--~~~~~i~~~~G   80 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-----FATR--KLQPMITSETG   80 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEE-----EECG--GGGGGTSSHHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEE-----ecCC--CHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999877     9875  69999987653

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=99.97  E-value=2.5e-33  Score=213.85  Aligned_cols=70  Identities=26%  Similarity=0.384  Sum_probs=66.0

Q ss_pred             CCcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHH
Q 024893            1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYE   77 (261)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~   77 (261)
                      |||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+     |+++  +|..||+++.
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-----f~s~--~~~~vi~~~~   78 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-----FATR--KLQPMITSET   78 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEE-----EECG--GGGGGTSSHH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeee-----ecCc--cHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999877     9875  6999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	261
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	2e-11
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	8e-11
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	8e-11

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (136), Expect = 2e-11
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 6  LKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSK 65
          +++     E+    TF KRK  LMKKAYE + LCD E+ +II+    K        + S 
Sbjct: 5  IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLF-----QYAS- 58

Query: 66 EGELTSIIRKYEK 78
            ++  ++ KY +
Sbjct: 59 -TDMDKVLLKYTE 70

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.1 bits (133), Expect = 8e-11
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 6  LKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSK 65
          ++++  + +     TF KRK+ +MKKA+E + L   +V +++       +     T+++ 
Sbjct: 7  IEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVY-----TFSTP 61

Query: 66 EGELTSIIRKYEKK 79
            +   I+ + E +
Sbjct: 62 --KFEPIVTQQEGR 73

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (132), Expect = 8e-11
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 6  LKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSK 65
          +K+E    +     TF KRK  +MKKAYE +TL   +V +++       +     T+ ++
Sbjct: 7  IKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVY-----TFATR 61

Query: 66 EGELTSIIRKYEKK 79
            +L  +I     K
Sbjct: 62 --KLQPMITSETGK 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	99.97
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	99.97

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=210.94  Aligned_cols=70  Identities=33%  Similarity=0.600  Sum_probs=66.8

Q ss_pred             CcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHh
Q 024893            2 ACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK   78 (261)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~   78 (261)
                      ||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+     |||+  ++++||+||+.
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~-----f~s~--~~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-----YAST--DMDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEE-----EESS--CHHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEE-----eeCC--CHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999766     9885  59999999975

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-33  Score=205.55  Aligned_cols=73  Identities=26%  Similarity=0.357  Sum_probs=68.2

Q ss_pred             CCcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhhh
Q 024893            1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKI   80 (261)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~   80 (261)
                      +||+||+|++|+|+..|+|||+|||.||||||+||||||||+||||||||+|++|+     |+|  ++++.|+++|....
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~-----f~s--~~~~~vi~~~~~~~   74 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-----FAT--RKLQPMITSETGKA   74 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEE-----EEC--GGGHHHHSSHHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEE-----eeC--CCHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999866     876  47999999997543

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3e-33  Score=204.93  Aligned_cols=73  Identities=19%  Similarity=0.337  Sum_probs=68.2

Q ss_pred             CcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhhhc
Q 024893            2 ACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKIS   81 (261)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~~   81 (261)
                      ||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+     |+||  +|..||+||...+.
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~-----f~sp--~v~~vl~r~~~~~~   75 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYT-----FSTP--KFEPIVTQQEGRNL   75 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-----EECT--TTTHHHHSHHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEe-----ccCC--CHHHHHHHHhcccH
Confidence            8999999999999999999999999999999999999999999999999999865     8764  69999999987644