Citrus Sinensis ID: 024907

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
MCNAYAEPLFVDPYAGCLVPPDVQMDLKKYSHHYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLFMSNGFGVGMVSYKEVASSLGKELAPGYYKNILFLAEQLRFSDDQMDTWRRELQRVEEEGDEEGFEEL
ccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccccccccccccEEEccHHHHHHHHHHHHHcccccccccEEEEEcccccccHHHHHHHccccccccEEEEEccccccccHHHHHHHHHHHHccccccEEEEEcccccHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHcccccccccccHHEEEHHHccccHHHHHHHHHHHHHHcccccccccccc
ccccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccEEcccccccEEEEEccHHHHHHHHHHHHHccccccHcccEEcHHHHHccHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHcccHcccccc
mcnayaeplfvdpyagclvppdvqmdlkkyshhyclttkfiddkllrtvnhMDGLKQVVLLTdgmdtrpyrlnwptstiifdispERIFKISAEKLegvgakiprsclflhvplessNIQQALRAkgfngnrpsvwaiqglpvmtlaSFEDVLLLVGSLAMNKCLFLGELPAwlaetefgnkstteKWMDKLFMSNGFGVGMVSYKEVASSLgkelapgyYKNILFLAEQLRFSDDQMDTWRRELQRVEeegdeegfeel
mcnayaeplfvdpyagCLVPPDVQMDLKKYSHHYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDgmdtrpyrlnwptstiifdispERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLFMSNGFGVGMVSYKEVASSLGKELAPGYYKNILFLAEQLRFSDDQMDTWRRELQRveeegdeegfeel
MCNAYAEPLFVDPYAGCLVPPDVQMDLKKYSHHYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLFMSNGFGVGMVSYKEVASSLGKELAPGYYKNILFLAEQLRFSDDQMDTWRRELQRVeeegdeegfeeL
***AYAEPLFVDPYAGCLVPPDVQMDLKKYSHHYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLFMSNGFGVGMVSYKEVASSLGKELAPGYYKNILFLAEQLRFSD*************************
**NAYAEPLFVDPYAGCLVPPDVQMDLKKYSHHYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLAET**********WMDKLFMSNGFGVGMVSYKEVASSLGKELAPGYYKNILFLAEQLRFSDDQMDTWRRELQRVEEEGD*EGFE*L
MCNAYAEPLFVDPYAGCLVPPDVQMDLKKYSHHYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLFMSNGFGVGMVSYKEVASSLGKELAPGYYKNILFLAEQLRFSDDQMDTWRRELQR*************
*****AEPLFVDPYAGCLVPPDVQMDLKKYSHHYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLFMSNGFGVGMVSYKEVASSLGKELAPGYYKNILFLAEQLRFSDDQMDTWRRELQRVEEE*********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MCNAYAEPLFVDPYAGCLVPPDVQMDLKKYSHHYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLFMSNGFGVGMVSYKEVASSLGKELAPGYYKNILFLAEQxxxxxxxxxxxxxxxxxxxxxGDEEGFEEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query260 2.2.26 [Sep-21-2011]
A0QM57301 Putative S-adenosyl-L-met yes no 0.557 0.481 0.313 1e-14
A0QSH4298 Putative S-adenosyl-L-met yes no 0.557 0.486 0.283 3e-14
Q73TE1301 Putative S-adenosyl-L-met N/A no 0.557 0.481 0.295 1e-13
Q0RJF1286 Putative S-adenosyl-L-met yes no 0.592 0.538 0.329 3e-13
B2HNW1301 Putative S-adenosyl-L-met yes no 0.684 0.591 0.295 4e-13
A3PVF1304 Putative S-adenosyl-L-met yes no 0.503 0.430 0.291 1e-12
B2HCU5324 Putative S-adenosyl-L-met no no 0.657 0.527 0.287 1e-12
Q73S86306 Putative S-adenosyl-L-met N/A no 0.511 0.434 0.289 3e-12
A4TEC9307 Putative S-adenosyl-L-met yes no 0.580 0.491 0.28 4e-12
Q1BEI3242 Putative S-adenosyl-L-met yes no 0.503 0.541 0.308 4e-12
>sp|A0QM57|Y4873_MYCA1 Putative S-adenosyl-L-methionine-dependent methyltransferase MAV_4873 OS=Mycobacterium avium (strain 104) GN=MAV_4873 PE=3 SV=1 Back     alignment and function desciption
 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 21/166 (12%)

Query: 7   EPLFVDPYAGCLV--------------PPDVQMDLKKYSHHYC----LTTKFIDDKLLRT 48
           +PL VDPYA                   PD Q+    +  H+       TK+ D+   R 
Sbjct: 33  DPLAVDPYAEIFCRAVGGSAADVLDGKDPDHQLKTDDFGVHFVNFQGARTKYFDEYFRRA 92

Query: 49  VNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCL 108
            +   G++QVV+L  G+D+R YRL+WP +T IF++   ++     E L GV A       
Sbjct: 93  ADA--GVRQVVILAAGLDSRAYRLDWPAATTIFELDQPQVLDFKREVLAGVDAHPRAERR 150

Query: 109 FLHVPLESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLL 154
            + V L   +  QALR  GF+ ++PS W  +GL +   AS ++ L 
Sbjct: 151 EIAVDLR-EDWPQALRDSGFDPDKPSAWIAEGLLIYLPASAQEQLF 195
Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.
Mycobacterium avium (strain 104) (taxid: 243243)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|A0QSH4|Y1480_MYCS2 Putative S-adenosyl-L-methionine-dependent methyltransferase MSMEG_1480/MSMEI_1444 OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_1480 PE=3 SV=1 Back     alignment and function description
>sp|Q73TE1|Y3777_MYCPA Putative S-adenosyl-L-methionine-dependent methyltransferase MAP_3777 OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=MAP_3777 PE=3 SV=2 Back     alignment and function description
>sp|Q0RJF1|Y3718_FRAAA Putative S-adenosyl-L-methionine-dependent methyltransferase FRAAL3718 OS=Frankia alni (strain ACN14a) GN=FRAAL3718 PE=3 SV=1 Back     alignment and function description
>sp|B2HNW1|Y539_MYCMM Putative S-adenosyl-L-methionine-dependent methyltransferase MMAR_0539 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=MMAR_0539 PE=3 SV=1 Back     alignment and function description
>sp|A3PVF1|Y1071_MYCSJ Putative S-adenosyl-L-methionine-dependent methyltransferase Mjls_1071 OS=Mycobacterium sp. (strain JLS) GN=Mjls_1071 PE=3 SV=1 Back     alignment and function description
>sp|B2HCU5|Y1059_MYCMM Putative S-adenosyl-L-methionine-dependent methyltransferase MMAR_1059 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=MMAR_1059 PE=3 SV=1 Back     alignment and function description
>sp|Q73S86|Y4190_MYCPA Putative S-adenosyl-L-methionine-dependent methyltransferase MAP_4190c OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=MAP_4190c PE=3 SV=1 Back     alignment and function description
>sp|A4TEC9|Y5025_MYCGI Putative S-adenosyl-L-methionine-dependent methyltransferase Mflv_5025 OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_5025 PE=3 SV=1 Back     alignment and function description
>sp|Q1BEI3|Y580_MYCSS Putative S-adenosyl-L-methionine-dependent methyltransferase Mmcs_0580 OS=Mycobacterium sp. (strain MCS) GN=Mmcs_0580 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
255564192259 conserved hypothetical protein [Ricinus 0.934 0.938 0.781 1e-113
147791053318 hypothetical protein VITISV_003624 [Viti 0.976 0.798 0.728 1e-110
297743901318 unnamed protein product [Vitis vinifera] 0.976 0.798 0.724 1e-109
356570966299 PREDICTED: putative S-adenosyl-L-methion 0.976 0.849 0.641 9e-96
42572811333 leucine carboxyl methyltransferase domai 0.961 0.750 0.612 3e-93
297809917335 hypothetical protein ARALYDRAFT_911979 [ 0.961 0.746 0.610 3e-91
449451179317 PREDICTED: putative S-adenosyl-L-methion 0.992 0.813 0.591 3e-86
449493237317 PREDICTED: putative S-adenosyl-L-methion 0.969 0.794 0.601 7e-86
186511461317 leucine carboxyl methyltransferase domai 0.873 0.716 0.595 4e-81
224064450237 predicted protein [Populus trichocarpa] 0.673 0.738 0.823 1e-80
>gi|255564192|ref|XP_002523093.1| conserved hypothetical protein [Ricinus communis] gi|223537655|gb|EEF39278.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 190/243 (78%), Positives = 220/243 (90%)

Query: 6   AEPLFVDPYAGCLVPPDVQMDLKKYSHHYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGM 65
           AEPLF+DPYAGCL  P +QMDLKKYSHHYCL TKFIDDKLLRTV+H+DGLKQVVLLTDGM
Sbjct: 5   AEPLFLDPYAGCLTDPTMQMDLKKYSHHYCLATKFIDDKLLRTVSHIDGLKQVVLLTDGM 64

Query: 66  DTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRA 125
           DTRPYRLNWPTS+IIFDISPERIFK SAE+L+GVGAKIPRSC+FLH+PLE SNIQQ+L +
Sbjct: 65  DTRPYRLNWPTSSIIFDISPERIFKKSAERLKGVGAKIPRSCMFLHIPLEFSNIQQSLHS 124

Query: 126 KGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTT 185
           KGFNGNRPS+WA+QGL + TLASFE++LL+VGSLAMN  LF+GELPAWLAETE G+K + 
Sbjct: 125 KGFNGNRPSIWAMQGLSIKTLASFEEILLIVGSLAMNGSLFVGELPAWLAETEIGSKPSM 184

Query: 186 EKWMDKLFMSNGFGVGMVSYKEVASSLGKELAPGYYKNILFLAEQLRFSDDQMDTWRREL 245
           EKWM+K+FM+NGF V +++Y EVA S+GKELA   YKNILF+AEQLRFSDDQM+TWRRE 
Sbjct: 185 EKWMEKIFMNNGFRVDLINYNEVARSMGKELALEDYKNILFVAEQLRFSDDQMETWRREF 244

Query: 246 QRV 248
            R+
Sbjct: 245 HRI 247

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147791053|emb|CAN68023.1| hypothetical protein VITISV_003624 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297743901|emb|CBI36871.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356570966|ref|XP_003553653.1| PREDICTED: putative S-adenosyl-L-methionine-dependent methyltransferase MSMEG_1480-like [Glycine max] Back     alignment and taxonomy information
>gi|42572811|ref|NP_974502.1| leucine carboxyl methyltransferase domain-containing protein [Arabidopsis thaliana] gi|332656765|gb|AEE82165.1| leucine carboxyl methyltransferase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297809917|ref|XP_002872842.1| hypothetical protein ARALYDRAFT_911979 [Arabidopsis lyrata subsp. lyrata] gi|297318679|gb|EFH49101.1| hypothetical protein ARALYDRAFT_911979 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449451179|ref|XP_004143339.1| PREDICTED: putative S-adenosyl-L-methionine-dependent methyltransferase Mb0917c-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449493237|ref|XP_004159231.1| PREDICTED: putative S-adenosyl-L-methionine-dependent methyltransferase Mb0917c-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|186511461|ref|NP_001118916.1| leucine carboxyl methyltransferase domain-containing protein [Arabidopsis thaliana] gi|332656766|gb|AEE82166.1| leucine carboxyl methyltransferase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224064450|ref|XP_002301482.1| predicted protein [Populus trichocarpa] gi|222843208|gb|EEE80755.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
TAIR|locus:1006230342333 AT4G02405 [Arabidopsis thalian 0.911 0.711 0.604 1.1e-80
UNIPROTKB|P71987312 MT1770 "Putative S-adenosyl-L- 0.430 0.358 0.333 2.5e-12
UNIPROTKB|O86359314 MT3874 "Putative S-adenosyl-L- 0.496 0.410 0.291 5.3e-12
UNIPROTKB|O53686302 MT0293 "Putative S-adenosyl-L- 0.684 0.589 0.282 3.7e-11
UNIPROTKB|P95073301 Rv0725c "Uncharacterized prote 0.388 0.335 0.326 1.9e-10
UNIPROTKB|O53841301 MT0851 "Putative S-adenosyl-L- 0.507 0.438 0.274 1.7e-08
UNIPROTKB|P96823310 MT0154 "Putative S-adenosyl-L- 0.492 0.412 0.296 2.4e-08
TAIR|locus:1006230342 AT4G02405 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 148/245 (60%), Positives = 193/245 (78%)

Query:     7 EPLFVDPYAGCLVPPDVQ--MDLKKYSHHYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDG 64
             EPLF+DPYA C +PP  +  +D+ +   HYCL TKFIDDKLL     +DGLKQVVL TDG
Sbjct:    82 EPLFIDPYAACFLPPYTKKDLDIHEQQQHYCLATKFIDDKLLEIAKRIDGLKQVVLFTDG 141

Query:    65 MDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALR 124
             MDTRPYRLNWPTST+IFD+SPE++F+I++EKL+GVGA+IP+SCLF H+P+E  NI+Q LR
Sbjct:   142 MDTRPYRLNWPTSTMIFDVSPEKVFEIASEKLQGVGARIPKSCLFFHIPVEFENIEQRLR 201

Query:   125 AKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKST 184
             +KGF+GNRPS+WA+QGLP+ + + FE +L  + SLAMN+C  +GELP     T    +S 
Sbjct:   202 SKGFSGNRPSIWAMQGLPLESQSGFEAILSAISSLAMNECYLIGELP-----TNITLQSD 256

Query:   185 TEKWMDKLFMSNGFGVGMVSYKEVASSLGKEL-APGYYKNILFLAEQLRFSDDQMDTWRR 243
               KWM+KLFMSNGF V +VSY+E+A+SLG  L +P  +  +LF+A+QL+FSDDQM+TWR+
Sbjct:   257 LSKWMEKLFMSNGFRVKIVSYEEIAASLGVVLHSPVNHDTVLFIAQQLKFSDDQMETWRQ 316

Query:   244 ELQRV 248
             E QRV
Sbjct:   317 EFQRV 321
GO:0008168 "methyltransferase activity" evidence=IEA
UNIPROTKB|P71987 MT1770 "Putative S-adenosyl-L-methionine-dependent methyltransferase Rv1729c/MT1770" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|O86359 MT3874 "Putative S-adenosyl-L-methionine-dependent methyltransferase Rv3767c/MT3874" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|O53686 MT0293 "Putative S-adenosyl-L-methionine-dependent methyltransferase Rv0281/MT0293" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|P95073 Rv0725c "Uncharacterized protein" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|O53841 MT0851 "Putative S-adenosyl-L-methionine-dependent methyltransferase Rv0830/MT0851" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|P96823 MT0154 "Putative S-adenosyl-L-methionine-dependent methyltransferase Rv0146" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028019001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (318 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
pfam04072175 pfam04072, LCM, Leucine carboxyl methyltransferase 5e-23
TIGR00027260 TIGR00027, mthyl_TIGR00027, methyltransferase, TIG 8e-18
COG3315297 COG3315, COG3315, O-Methyltransferase involved in 1e-14
>gnl|CDD|217872 pfam04072, LCM, Leucine carboxyl methyltransferase Back     alignment and domain information 
 Score = 91.9 bits (229), Expect = 5e-23
 Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 12/164 (7%)

Query: 6   AEPLFVDPYAGCLVPPDVQMDLKKYSHH--------YCLTTKFIDDKLLRTVNHMDGLKQ 57
            +PL  DPYA  LV   +  D  K                T+F DD L   +    G +Q
Sbjct: 15  PDPLLDDPYAAELVRA-IDYDFSKLRPGGAPQLNLGIAARTRFFDDFLRAFLAAHPGARQ 73

Query: 58  VVLLTDGMDTRPYRLNWPTSTI-IFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLES 116
           VV+L  G+DTR YRL+WP   +  F++    + +     L   GA+ P    ++ V L  
Sbjct: 74  VVILGAGLDTRAYRLDWPAGGVRWFEVDLPEVIEFKRRLLPEAGARPPARRRYVAVDLRD 133

Query: 117 SNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLA 160
            +   ALRA GF+ +RP+++  +GL +M L + E V  L+  +A
Sbjct: 134 DDWLDALRAAGFDPSRPTLFVAEGL-LMYL-TEEAVDALLRRIA 175

Family of leucine carboxyl methyltransferases EC:2.1.1.-. This family may need divides a the full alignment contains a significantly shorter mouse sequence. Length = 175
>gnl|CDD|232789 TIGR00027, mthyl_TIGR00027, methyltransferase, TIGR00027 family Back     alignment and domain information
>gnl|CDD|225852 COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 260
TIGR00027260 mthyl_TIGR00027 methyltransferase, putative, TIGR0 100.0
COG3315297 O-Methyltransferase involved in polyketide biosynt 100.0
PF04072183 LCM: Leucine carboxyl methyltransferase; InterPro: 100.0
KOG2918335 consensus Carboxymethyl transferase [Posttranslati 99.94
PF04672267 Methyltransf_19: S-adenosyl methyltransferase; Int 97.96
TIGR03438301 probable methyltransferase. This model represents 96.48
PF12147311 Methyltransf_20: Putative methyltransferase; Inter 96.0
PF00891241 Methyltransf_2: O-methyltransferase; InterPro: IPR 95.78
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 94.78
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 94.73
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 94.57
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 94.41
TIGR03439319 methyl_EasF probable methyltransferase domain, Eas 94.21
TIGR00740239 methyltransferase, putative. A simple BLAST search 93.59
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 93.28
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 92.39
COG4106257 Tam Trans-aconitate methyltransferase [General fun 92.12
TIGR02021219 BchM-ChlM magnesium protoporphyrin O-methyltransfe 91.75
PRK01683258 trans-aconitate 2-methyltransferase; Provisional 91.04
PF05401201 NodS: Nodulation protein S (NodS); InterPro: IPR00 90.44
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 90.03
PLN03075296 nicotianamine synthase; Provisional 89.45
PRK11036255 putative S-adenosyl-L-methionine-dependent methylt 89.04
KOG1975389 consensus mRNA cap methyltransferase [RNA processi 87.94
PRK11207197 tellurite resistance protein TehB; Provisional 86.94
PF03848192 TehB: Tellurite resistance protein TehB; InterPro: 86.11
PRK15068322 tRNA mo(5)U34 methyltransferase; Provisional 84.85
TIGR00452314 methyltransferase, putative. Known examples to dat 84.67
PRK12335287 tellurite resistance protein TehB; Provisional 84.35
KOG2361264 consensus Predicted methyltransferase [General fun 84.04
PLN02781234 Probable caffeoyl-CoA O-methyltransferase 83.54
PRK08317241 hypothetical protein; Provisional 83.36
PRK00121202 trmB tRNA (guanine-N(7)-)-methyltransferase; Revie 83.32
PRK00377198 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; 83.15
cd02440107 AdoMet_MTases S-adenosylmethionine-dependent methy 82.92
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 82.14
PLN02244340 tocopherol O-methyltransferase 81.84
PF02353273 CMAS: Mycolic acid cyclopropane synthetase; InterP 81.49
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family Back     alignment and domain information 
Probab=100.00  E-value=3.7e-46  Score=335.17  Aligned_cols=211  Identities=25%  Similarity=0.437  Sum_probs=177.9

Q ss_pred             CCCCCCCCccCHhhhhcCCCCCcc------hh-------h----hhhHHHHHHHHHHHHHHHHHhhccCCcceEEEeCCC
Q 024907            2 CNAYAEPLFVDPYAGCLVPPDVQM------DL-------K----KYSHHYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDG   64 (260)
Q Consensus         2 ~s~r~~~l~~Dp~A~~~~~~~~~~------~~-------~----~~~~~~~~Rtr~iDd~l~~~~~~~~g~~QVV~LGaG   64 (260)
                      .|+++++||+||||..|+++.++.      .+       .    .+..++++||++||++++++++  .|++||||||||
T Consensus        14 es~r~~~l~~Dp~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rtr~~D~~i~~~~~--~g~~qvV~LGaG   91 (260)
T TIGR00027        14 ETQRPDRLFRDPYAAAFLGAAGRAAMPLDGLLRADAGAYDGLLGGFADFIAVRTRFFDDFLLAAVA--AGIRQVVILGAG   91 (260)
T ss_pred             HhCCCCcCcCChHHHHHhchhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHh--cCCcEEEEeCCc
Confidence            478999999999999999987651      01       1    1335689999999999999997  578899999999


Q ss_pred             CCCcccccCCCCCcEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCeEEEEccC-CC
Q 024907           65 MDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGL-PV  143 (260)
Q Consensus        65 lDTR~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Ptl~i~EGv-~Y  143 (260)
                      ||||+|||+++.+++|||||+|+|+++|+++|++.+..++.+++++++|+. ++|.+.|..+|||+++||+||+||| +|
T Consensus        92 lDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~~~ptl~i~EGvl~Y  170 (260)
T TIGR00027        92 LDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDPTAPTAWLWEGLLMY  170 (260)
T ss_pred             cccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCCCCCeeeeecchhhc
Confidence            999999999987899999999999999999999887666778999999999 8999999999999999999999999 89


Q ss_pred             CCHHHHHHHHHHHHhccCCCcEEEEeCChhhhh--------h-hcCCC-cchhHH--------HHHHHHhCCceeeeeCH
Q 024907          144 MTLASFEDVLLLVGSLAMNKCLFLGELPAWLAE--------T-EFGNK-STTEKW--------MDKLFMSNGFGVGMVSY  205 (260)
Q Consensus       144 l~~~~~~~ll~~i~~~~a~gs~l~~d~~~~~~~--------~-~~~~~-~~~~~w--------~~~~~~~~Gw~~~~~~~  205 (260)
                      |+++++.+||+.|++++++||+|+||+...+..        . ..... ....+|        +.++|..+||++..+++
T Consensus       171 L~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gw~~~~~~~  250 (260)
T TIGR00027       171 LTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAERGWRASEHTP  250 (260)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHHCCCeeecCCH
Confidence            999999999999999999999999998543210        0 00000 112222        46899999999866699


Q ss_pred             HHHHHHcCCC
Q 024907          206 KEVASSLGKE  215 (260)
Q Consensus       206 ~~~~~~~g~~  215 (260)
                      .|+.++||++
T Consensus       251 ~e~~~~y~r~  260 (260)
T TIGR00027       251 GELARRYGRP  260 (260)
T ss_pred             HHHHHHhCCC
Confidence            9999999985

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues Back     alignment and domain information
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length Back     alignment and domain information
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] Back     alignment and domain information
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase Back     alignment and domain information
>PRK01683 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PLN03075 nicotianamine synthase; Provisional Back     alignment and domain information
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB Back     alignment and domain information
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR00452 methyltransferase, putative Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>KOG2361 consensus Predicted methyltransferase [General function prediction only] Back     alignment and domain information
>PLN02781 Probable caffeoyl-CoA O-methyltransferase Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed Back     alignment and domain information
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional Back     alignment and domain information
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>PLN02244 tocopherol O-methyltransferase Back     alignment and domain information
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
2ckd_A310 Crystal Structure Of Ml2640 From Mycobacterium Lepr 1e-09
>pdb|2CKD|A Chain A, Crystal Structure Of Ml2640 From Mycobacterium Leprae Length = 310 Back     alignment and structure 
Iteration: 1

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
Query: 33  HYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKIS 92
           +  + T F D      V  +DG++Q V+L  G+D+R YRL+WPT T +++I   ++    
Sbjct: 83  YQAVRTNFFDTYFNNAV--IDGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYK 140
Query: 93  AEKLEGVGAKIPRSCLFLHVPLE-SSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFED 151
           +  L   G  +  +     VP++   +   ALR+ GF+ +  + W  +GL +   A+ +D
Sbjct: 141 STTLAEHG--VTPTADRREVPIDLRQDWPPALRSAGFDPSARTAWLAEGLLMYLPATAQD 198
Query: 152 VLLL-VGSLA 160
            L   +G L+
Sbjct: 199 GLFTEIGGLS 208

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
2uyo_A310 Hypothetical protein ML2640; putative methyltransf 1e-22
3iei_A334 Leucine carboxyl methyltransferase 1; LCMT-1, S-ad 5e-12
1rjd_A334 PPM1P, carboxy methyl transferase for protein phos 4e-05
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* Length = 310 Back     alignment and structure
 Score = 93.2 bits (231), Expect = 1e-22
 Identities = 47/226 (20%), Positives = 82/226 (36%), Gaps = 29/226 (12%)

Query: 6   AEPLFVDPYAGCLV------------------------PPDVQMDLKKYSHHYCLTTKFI 41
            + L  DPYA  LV                          +    ++    +  + T F 
Sbjct: 32  PDALIRDPYAKLLVTNTGAGALWEAMLDPSMVAKVEAIDAEAAAMVEHMRSYQAVRTNFF 91

Query: 42  DDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGA 101
           D      V   DG++Q V+L  G+D+R YRL+WPT T +++I   ++    +  L   G 
Sbjct: 92  DTYFNNAVI--DGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGV 149

Query: 102 KIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGL-PVMTLASFEDVLLLVGSLA 160
                   + + L   +   ALR+ GF+ +  + W  +GL   +   + + +   +G L+
Sbjct: 150 TPTADRREVPIDLR-QDWPPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLS 208

Query: 161 MNKCLFLGEL-PAWLAETEFGNKSTTEKWMDKLFMSNGFGVGMVSY 205
                   E  P    E     +    +  D L       V  + Y
Sbjct: 209 AVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIY 254
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* Length = 334 Back     alignment and structure
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A Length = 334 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
2uyo_A310 Hypothetical protein ML2640; putative methyltransf 100.0
3iei_A334 Leucine carboxyl methyltransferase 1; LCMT-1, S-ad 100.0
1rjd_A334 PPM1P, carboxy methyl transferase for protein phos 100.0
2zwa_A 695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 99.97
3giw_A277 Protein of unknown function DUF574; rossmann-fold 98.89
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 98.63
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 96.72
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 96.63
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 96.05
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 95.99
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 95.76
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 95.68
3dp7_A363 SAM-dependent methyltransferase; structural genomi 95.68
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 95.47
3ocj_A305 Putative exported protein; structural genomics, PS 95.2
3lcc_A235 Putative methyl chloride transferase; halide methy 95.2
3g2m_A299 PCZA361.24; SAM-dependent methyltransferase, glyco 95.16
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 93.98
1ri5_A298 MRNA capping enzyme; methyltransferase, M7G, messe 93.97
1wzn_A252 SAM-dependent methyltransferase; structural genomi 93.83
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 93.81
3gu3_A284 Methyltransferase; alpha-beta protein, structural 93.8
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 93.7
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 93.63
2p8j_A209 S-adenosylmethionine-dependent methyltransferase; 93.51
2r3s_A335 Uncharacterized protein; methyltransferase domain, 93.29
3bgv_A313 MRNA CAP guanine-N7 methyltransferase; alternative 92.87
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 92.65
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 92.6
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 92.42
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 92.13
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 91.82
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 91.76
3dtn_A234 Putative methyltransferase MM_2633; structural gen 91.75
3ggd_A245 SAM-dependent methyltransferase; YP_325210.1, stru 91.73
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 91.54
3pfg_A263 N-methyltransferase; N,N-dimethyltransferase, SAM 91.35
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 91.35
2fyt_A340 Protein arginine N-methyltransferase 3; structural 91.22
3f4k_A257 Putative methyltransferase; structural genomics, P 90.77
3lcv_B281 Sisomicin-gentamicin resistance methylase SGM; ant 90.61
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 90.51
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 90.27
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 90.14
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 90.05
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 89.91
3hnr_A220 Probable methyltransferase BT9727_4108; structural 89.78
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 89.77
3cgg_A195 SAM-dependent methyltransferase; NP_600671.1, meth 89.75
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 89.67
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 89.6
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 89.49
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 89.19
2kw5_A202 SLR1183 protein; structural genomics, northeast st 89.17
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 89.06
4hc4_A376 Protein arginine N-methyltransferase 6; HRMT1L6, S 89.04
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 88.92
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 88.85
3c3y_A237 Pfomt, O-methyltransferase; plant secondary metabo 88.84
1y8c_A246 S-adenosylmethionine-dependent methyltransferase; 88.61
2ex4_A241 Adrenal gland protein AD-003; methyltransferase, s 88.49
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 88.31
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 88.29
1g6q_1328 HnRNP arginine N-methyltransferase; SAM-binding do 88.21
3p9n_A189 Possible methyltransferase (methylase); RV2966C, a 88.0
3q7e_A349 Protein arginine N-methyltransferase 1; HET: SAH; 87.5
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 87.27
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 87.2
3duw_A223 OMT, O-methyltransferase, putative; alternating of 87.02
2avd_A229 Catechol-O-methyltransferase; structural genomics, 86.98
2y1w_A 348 Histone-arginine methyltransferase CARM1; histone 86.9
2p7i_A250 Hypothetical protein; putative methyltransferase, 86.18
2yxd_A183 Probable cobalt-precorrin-6Y C(15)-methyltransfer 85.55
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 85.17
3d2l_A243 SAM-dependent methyltransferase; ZP_00538691.1, st 84.97
1pjz_A203 Thiopurine S-methyltransferase; polymorphism, S-ad 84.97
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 84.81
3dh0_A219 SAM dependent methyltransferase; cystal structure, 84.75
1sui_A247 Caffeoyl-COA O-methyltransferase; rossmann fold, p 83.72
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 83.19
1vl5_A260 Unknown conserved protein BH2331; putative methylt 82.77
3g07_A292 7SK snRNA methylphosphate capping enzyme; structur 82.51
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 81.83
3r0q_C 376 Probable protein arginine N-methyltransferase 4.2; 81.69
3fzg_A200 16S rRNA methylase; methyltransferase, plasmid, tr 81.55
3lpm_A259 Putative methyltransferase; structural genomics, p 81.41
3e8s_A227 Putative SAM dependent methyltransferase; NP_74470 80.95
3bxo_A239 N,N-dimethyltransferase; desosamine, sugar, carboh 80.8
3fpf_A298 Mtnas, putative uncharacterized protein; thermonic 80.64
3m70_A286 Tellurite resistance protein TEHB homolog; structu 80.62
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* Back     alignment and structure
Probab=100.00  E-value=4.3e-41  Score=307.94  Aligned_cols=215  Identities=21%  Similarity=0.336  Sum_probs=178.1

Q ss_pred             CCCCCCCCccCHhhhhcCCCCCcc-h--------hh---------------hhhHHHHHHHHHHHHHHHHHhhccCCcce
Q 024907            2 CNAYAEPLFVDPYAGCLVPPDVQM-D--------LK---------------KYSHHYCLTTKFIDDKLLRTVNHMDGLKQ   57 (260)
Q Consensus         2 ~s~r~~~l~~Dp~A~~~~~~~~~~-~--------~~---------------~~~~~~~~Rtr~iDd~l~~~~~~~~g~~Q   57 (260)
                      +++++++||+||||..|+++.++. .        +.               .+..++++||++||++++++++  .|++|
T Consensus        28 es~~~~~l~~Dp~A~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rt~~~d~~v~~~~~--~g~~Q  105 (310)
T 2uyo_A           28 ETDRPDALIRDPYAKLLVTNTGAGALWEAMLDPSMVAKVEAIDAEAAAMVEHMRSYQAVRTNFFDTYFNNAVI--DGIRQ  105 (310)
T ss_dssp             HHTSTTCSSCCTTHHHHHHTTSSTTHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCE
T ss_pred             HhCCCCCCCCCHHHHHHhhhhccchhhHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHH--hCCCe
Confidence            567899999999999999876543 1        00               1345789999999999999997  57899


Q ss_pred             EEEeCCCCCCcccccCCCCCcEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCeEEE
Q 024907           58 VVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWA  137 (260)
Q Consensus        58 VV~LGaGlDTR~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Ptl~i  137 (260)
                      ||+||||||||+||+++|.+++|||||+|+|++.|+++|.+.+..++.+++++++|+.. +|.+.|..+|||+++||+||
T Consensus       106 vV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt~~i  184 (310)
T 2uyo_A          106 FVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSARTAWL  184 (310)
T ss_dssp             EEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCEEEE
T ss_pred             EEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCEEEE
Confidence            99999999999999998878999999999999999999998766556789999999987 89999999999999999999


Q ss_pred             EccC-CCCCHHHHHHHHHHHHhccCCCcEEEEeCChhh--------h----hhh--cC---------CCcc-h-hHHHHH
Q 024907          138 IQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGELPAWL--------A----ETE--FG---------NKST-T-EKWMDK  191 (260)
Q Consensus       138 ~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~~~~--------~----~~~--~~---------~~~~-~-~~w~~~  191 (260)
                      +||| +||+++++.+||+.|++.+++||.+++|+...-        .    ...  .+         +... + ..-..+
T Consensus       185 ~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~  264 (310)
T 2uyo_A          185 AEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRAVVAD  264 (310)
T ss_dssp             ECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCCCHHH
T ss_pred             EechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCCcchhHHHHHHHHHHHHHcCCcCCCCccccccCCCChHHHHH
Confidence            9999 799999999999999999899999999974310        1    101  01         1010 1 122468


Q ss_pred             HHHhCCceeeeeCHHHHHHHcCCCCCCc
Q 024907          192 LFMSNGFGVGMVSYKEVASSLGKELAPG  219 (260)
Q Consensus       192 ~~~~~Gw~~~~~~~~~~~~~~g~~~~~~  219 (260)
                      +|.++||+....++.++.++||+++|.+
T Consensus       265 ~f~~~G~~~~~~~~~e~~~~yg~~~~~~  292 (310)
T 2uyo_A          265 WLNRHGWRATAQSAPDEMRRVGRWGDGV  292 (310)
T ss_dssp             HHTTTTEEEEEEEHHHHHHHTTCCCTTS
T ss_pred             HHHHCcCccccCCHHHHHHHcCCCCCCc
Confidence            8999999966889999999999987653
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* Back     alignment and structure
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Back     alignment and structure
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Back     alignment and structure
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Back     alignment and structure
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Back     alignment and structure
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Back     alignment and structure
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Back     alignment and structure
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Back     alignment and structure
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Back     alignment and structure
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Back     alignment and structure
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Back     alignment and structure
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Back     alignment and structure
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Back     alignment and structure
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 260
d2uyoa1297 c.66.1.57 (A:14-310) Putative methyltransferase ML 8e-22
d1rjda_328 c.66.1.37 (A:) Leucine carboxy methyltransferase P 5e-07
>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} Length = 297 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

 Score = 89.8 bits (222), Expect = 8e-22
 Identities = 46/226 (20%), Positives = 80/226 (35%), Gaps = 29/226 (12%)

Query: 6   AEPLFVDPYAGCLV------------------------PPDVQMDLKKYSHHYCLTTKFI 41
            + L  DPYA  LV                          +    ++    +  + T F 
Sbjct: 19  PDALIRDPYAKLLVTNTGAGALWEAMLDPSMVAKVEAIDAEAAAMVEHMRSYQAVRTNFF 78

Query: 42  DDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGA 101
           D      V    G++Q V+L  G+D+R YRL+WPT T +++I   ++    +  L   G 
Sbjct: 79  DTYFNNAVID--GIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGV 136

Query: 102 KIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQG-LPVMTLASFEDVLLLVGSLA 160
                   + + L       ALR+ GF+ +  + W  +G L  +   + + +   +G L+
Sbjct: 137 TPTADRREVPIDLRQD-WPPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLS 195

Query: 161 MNKCLFLGEL-PAWLAETEFGNKSTTEKWMDKLFMSNGFGVGMVSY 205
                   E  P    E     +    +  D L       V  + Y
Sbjct: 196 AVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIY 241
>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
d2uyoa1297 Putative methyltransferase ML2640 {Mycobacterium l 100.0
d1rjda_328 Leucine carboxy methyltransferase Ppm1 {Baker's ye 99.97
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 97.12
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.97
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 96.1
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 94.51
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 93.91
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 93.9
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 93.86
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 93.16
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 92.29
d1oria_316 Protein arginine N-methyltransferase 1, PRMT1 {Rat 91.67
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 91.56
d2fyta1311 Protein arginine N-methyltransferase 3, PRMT3 {Hum 90.09
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 89.82
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 89.32
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 88.87
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 88.79
d1g6q1_328 Arginine methyltransferase, HMT1 {Baker's yeast (S 88.78
d1xtpa_254 Hypothetical protein Lmaj004091aaa (LmjF30.0810) { 85.66
d2a14a1257 Indolethylamine N-methyltransferase, INMT {Human ( 82.73
d1nw3a_328 Catalytic, N-terminal domain of histone methyltran 81.1
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 80.95
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 80.84
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 80.48
d1dusa_194 Hypothetical protein MJ0882 {Archaeon Methanococcu 80.2
>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=100.00  E-value=1.9e-45  Score=332.85  Aligned_cols=214  Identities=21%  Similarity=0.347  Sum_probs=177.1

Q ss_pred             CCCCCCCCccCHhhhhcCCCCCcchh------------------------hhhhHHHHHHHHHHHHHHHHHhhccCCcce
Q 024907            2 CNAYAEPLFVDPYAGCLVPPDVQMDL------------------------KKYSHHYCLTTKFIDDKLLRTVNHMDGLKQ   57 (260)
Q Consensus         2 ~s~r~~~l~~Dp~A~~~~~~~~~~~~------------------------~~~~~~~~~Rtr~iDd~l~~~~~~~~g~~Q   57 (260)
                      .|+++++||+||||..|++..+....                        ..+..++++||++||+++.++++  .|++|
T Consensus        15 es~r~~~l~~Dp~A~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rtr~~D~~~~~~~~--~g~~q   92 (297)
T d2uyoa1          15 ETDRPDALIRDPYAKLLVTNTGAGALWEAMLDPSMVAKVEAIDAEAAAMVEHMRSYQAVRTNFFDTYFNNAVI--DGIRQ   92 (297)
T ss_dssp             HHTSTTCSSCCTTHHHHHHTTSSTTHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCE
T ss_pred             HhCCCCcCcCCHHHHHHHHhhhhhhhhhhhccchhhhhcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHh--hCCCe
Confidence            47899999999999999987654211                        01235689999999999999997  67899


Q ss_pred             EEEeCCCCCCcccccCCCCCcEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCeEEE
Q 024907           58 VVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWA  137 (260)
Q Consensus        58 VV~LGaGlDTR~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Ptl~i  137 (260)
                      ||+||||||||+|||+++.+++|||||+|+|+++|+++|++.+..++.+++++++|++ ++|.+.|.++|||+++||+||
T Consensus        93 vV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~~~~~L~~~g~d~~~ptl~i  171 (297)
T d2uyoa1          93 FVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLR-QDWPPALRSAGFDPSARTAWL  171 (297)
T ss_dssp             EEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTT-SCHHHHHHHTTCCTTSCEEEE
T ss_pred             EEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEeccccc-chHHHHHHhcCCCCCCCEEEE
Confidence            9999999999999999988999999999999999999999988777677888999997 479999999999999999999


Q ss_pred             EccC-CCCCHHHHHHHHHHHHhccCCCcEEEEeCChhhh-----h-------hhcCC-----CcchhHH--------HHH
Q 024907          138 IQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLA-----E-------TEFGN-----KSTTEKW--------MDK  191 (260)
Q Consensus       138 ~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~~~~~-----~-------~~~~~-----~~~~~~w--------~~~  191 (260)
                      +||| +||+++++.+||+.|++++++||.|++|+.+...     .       .....     ......|        +.+
T Consensus       172 ~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (297)
T d2uyoa1         172 AEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRAVVAD  251 (297)
T ss_dssp             ECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCCCHHH
T ss_pred             EccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecccccchhHHHHHHHHHHHHhhhccccCCChHhhccCCCchhhHHH
Confidence            9999 8999999999999999999999999999853110     0       00000     0000111        357


Q ss_pred             HHHhCCceeeeeCHHHHHHHcCCCCCC
Q 024907          192 LFMSNGFGVGMVSYKEVASSLGKELAP  218 (260)
Q Consensus       192 ~~~~~Gw~~~~~~~~~~~~~~g~~~~~  218 (260)
                      +|.++||++..+...+...+|||.++.
T Consensus       252 ~l~~~Gw~~~~~~~~~~~~~~gR~~~~  278 (297)
T d2uyoa1         252 WLNRHGWRATAQSAPDEMRRVGRWGDG  278 (297)
T ss_dssp             HHTTTTEEEEEEEHHHHHHHTTCCCTT
T ss_pred             HHHhCCCEEEEeccHHHHHHcCCCCCC
Confidence            889999999888999999999997654
>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure