Citrus Sinensis ID: 024966

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Protein Sequence
MDITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLITSLSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLPESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEGSDNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDGKLVCSLFEFDSFITKRGLIIQGIEVRPKSG
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHccccHHHHHHHHcccHHHHHHcccccHHcccccccHHHHHHcccccccccccHHHHHHHHHcccEEEccccccEEcccccccEEEEEcccccEEEcccccccEEEEEccccccccEEEEEEEEEEEEEEEEEEEccccccEEEEEEEEEEcccccccccccEEEEEEEccccccEEEEEEcccccccccccccccccEEEEEEEEEEccccccEEEEEEEEEEccccccccEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccHccccHHHHHHHHHHcccHHHHHHHHHcHHHHHHHcccHHHHHHccccHHHHHHHccccccccccHHHHHHHHHcccEEEccccEEEEEEcccccEEEEEEcccEEEEEccccccEEEcccccccHHHHHHHHHEEEEEEEEEEcccEcccccEEEEEEEEEEcccccccccccEEEEEEEccccccEEEEEEcccccccccccccccccEEEEEEEEEEEccccccEEEEEEEEEcccccccEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
MDITIALPAECISNIIslttprdacrlsvvspvfksaadsdsvwenflpsdykQIISNSVSSLITSLSKKDLYFhlcrnpiiinngtmsfalqpesgkkcymvgtkglsiawgdepnhwiltslpesrfpevaeLKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVEskygfarrpvdsgvyiegsdngvrrrllldpsrnmaRLSQDRrdgwieiemgeffnengddgklvCSLFEFDSFITKRGLiiqgievrpksg
Flexible Loop (DISEMBL)
MDITIALPAECISNIislttprdacRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLITSLSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLPESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESkygfarrpvdsgvyiegsdngvrrrllldpsrnmarlsqdrrdGWIEIEMGEFFNENGDDGKLVCSLFEFDSfitkrgliiqgievrpksg
Low Complexity Region (SEG)
MDITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQiisnsvsslitslsKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLPESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEGSDNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDGKLVCSLFEFDSFITKRGLIIQGIEVRPKSG
Disordered region (IsUnstruct)
**ITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLITSLSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLPESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEGSDNGVRRRLLL*************RDGWIEIEMGEFFNENGDDGKLVCSLFEFDSFITKRGLIIQGIE******
Disordered Region (DISOPRED)
**ITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQI**************KDLYFHLCRNPIIINNGTM****QPESGKKCYMVGTKGLSIAWGDEPNHWILTSLPESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEGSDNGVRRRLLLD********SQDRRDGWIEIEMGEFFNENGDDGKLVCSLFEFDSFITKRGLIIQGIEVRPKS*
Disordered Region (DISEMBL)
MDITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLITSLSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLPESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEGSDNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDGKLVCSLFEFDSFITKRGLIIQGIEVRPKSG
Disordered Region (DISPRO)
*DITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLITSLSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLPESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEGSDNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDGKLVCSLFEFDSFITKRGLIIQGIEVRPKS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLITSLSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLPESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEGSDNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDGKLVCSLFEFDSFITKRGLIIQGIEVRPKSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	260	2.2.26 [Sep-21-2011]
Q949S5	257	F-box protein PP2-B11 OS=	yes	no	0.946	0.957	0.447	3e-55
Q9ZVQ6	272	F-box protein PP2-B10 OS=	no	no	0.942	0.900	0.438	2e-54
Q3E6P4	320	F-box protein At2g02240 O	no	no	0.946	0.768	0.441	1e-53
Q9FLU7	251	Putative F-box protein PP	no	no	0.938	0.972	0.431	2e-53
Q9ZVR5	310	Putative F-box protein PP	no	no	0.942	0.790	0.442	3e-53
Q9ZVQ8	305	Putative F-box protein PP	no	no	0.930	0.793	0.397	2e-48
Q6NPT8	336	F-box protein PP2-B1 OS=A	no	no	0.957	0.741	0.375	3e-47
Q9FV02	294	F-box protein SKIP3 OS=Ar	no	no	0.95	0.840	0.396	1e-45
Q9ZVR0	307	Putative F-box protein PP	no	no	0.95	0.804	0.389	4e-43
O80494	289	F-box protein PP2-B15 OS=	no	no	0.973	0.875	0.362	9e-42

>sp|Q949S5|P2B11_ARATH F-box protein PP2-B11 OS=Arabidopsis thaliana GN=PP2B11 PE=1 SV=1

 Score =  215 bits (547), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 115/257 (44%), Positives = 160/257 (62%), Gaps = 11/257 (4%)

Query: 7   LPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLITS 66
           LP +CI+ I+SLTTP D CRLS VS +F+SAA SD VW +FLP+D+    + + + L T 
Sbjct: 4   LPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFPAGFA-APAGLPT- 61

Query: 67  LSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLPE 126
             +K L+F L  NP++IN   +SF+L+ +SG KCYM+  + L+I WG E  +W   SLP 
Sbjct: 62  --RKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWISLPN 119

Query: 127 SRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYI-- 184
           +RF EVAEL  VWW ++   I   +LS  T Y AY VFK+  S YGF R+PV++ + +  
Sbjct: 120 TRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGF-RQPVETSLVLAD 178

Query: 185 -EGSDNGVRR---RLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDGKLVCSLFEFD 240
            E +DN V+     L+ D      +    RRDGW E+E+G+FF   GD G++  SL E  
Sbjct: 179 TESTDNVVQPSMISLMQDSGGEEGQSPVLRRDGWYEVELGQFFKRRGDLGEIEMSLKETK 238

Query: 241 SFITKRGLIIQGIEVRP 257
               K+GLI+ GIE+RP
Sbjct: 239 GPYEKKGLIVYGIEIRP 255

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ6|P2B10_ARATH F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 114/260 (43%), Positives = 158/260 (60%), Gaps = 15/260 (5%)

Query: 6   ALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLIT 65
           + P +CIS IIS T PRDAC  + VS  F+S   SD +WE FLP+DY+ +I  S      
Sbjct: 16  SFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSR----V 71

Query: 66  SLSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLP 125
             SKK+LYF LC +P++ ++   S  L+  SGK+C M+    LSI WGD P +W    +P
Sbjct: 72  FSSKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIP 131

Query: 126 ESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIE 185
           ESRF +VA+L+ V WF+++    TR+LS RT Y+AY+VFK V+  YGF    +++ V + 
Sbjct: 132 ESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAVGVV 191

Query: 186 GSDNGVRRRLLL------DPSRNMARLSQDRRDGWIEIEMGEFFNENG--DDGKLVCSLF 237
           G +    RRL+          RN+ +  Q R DGW+EIE+GEFFN+ G  D+ ++  S  
Sbjct: 192 GQEPS--RRLICFSEAIRRGRRNVVKPKQ-REDGWMEIELGEFFNDGGIMDNDEIEMSAL 248

Query: 238 EFDSFITKRGLIIQGIEVRP 257
           E      K GLIIQGIE+RP
Sbjct: 249 ETKQLNRKCGLIIQGIEIRP 268

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6P4|FB95_ARATH F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1

 Score =  209 bits (533), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 114/258 (44%), Positives = 153/258 (59%), Gaps = 12/258 (4%)

Query: 7   LPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLITS 66
           LP +CISNIIS T+PRDAC  + VS  F+SA  SD VW+ FLP +Y+ ++S S       
Sbjct: 64  LPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSR----VF 119

Query: 67  LSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLPE 126
            SKK+LYF LC NP++I +G  SF L+  SGK+C M+ +K L I WG  P +W   S+PE
Sbjct: 120 ASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPE 179

Query: 127 SRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEG 186
           SRF ++AEL  V WF+++     R+LS  T Y+AY+VFK  +   G    PV+ G+ + G
Sbjct: 180 SRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGLGLVG 239

Query: 187 SDNGVRRRLLLDPSRNMARLS-------QDRRDGWIEIEMGEFFNENGDDGKLVCSLFEF 239
            ++  R    + P     R           R DGW+E E+GEFFNE   D ++  S+ E 
Sbjct: 240 QESSKRFIYFIGPRDRRGRRETRDVTKPDQREDGWMEAELGEFFNEERCD-EIEFSVIEI 298

Query: 240 DSFITKRGLIIQGIEVRP 257
            S   K GLIIQGIE RP
Sbjct: 299 KSPSWKSGLIIQGIEFRP 316

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLU7|P2B12_ARATH Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/255 (43%), Positives = 155/255 (60%), Gaps = 11/255 (4%)

Query: 5   IALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLI 64
           + LP ECI+ +IS T+P DACR+S VS + +SAADS++ WE FLPSDY+  I NS+S   
Sbjct: 4   LDLPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNSLSRF- 62

Query: 65  TSLSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSL 124
              S K L+   C +P++I +G  SF ++  SGKKC+M+  + L I W D P  WI  S+
Sbjct: 63  ---SNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSI 119

Query: 125 PESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVE-SKYGFARRPVDSGVY 183
           P+SRF EVA L  V WF+++  I T +LS  TNY+AYLVFK  E   +GF   P++    
Sbjct: 120 PDSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLEVSFR 179

Query: 184 IEGSDNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDGKLVCSLFEFDSFI 243
              ++    RR+ L          + R DGW+EIE+GE++    DD ++  S+ E     
Sbjct: 180 STRTEVYNNRRVFLKSGTQ-----ESREDGWLEIELGEYYV-GFDDEEIEMSVLETREGG 233

Query: 244 TKRGLIIQGIEVRPK 258
            K G+I+QGIE+RPK
Sbjct: 234 WKGGIIVQGIEIRPK 248

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR5|PP2B2_ARATH Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=4 SV=2

 Score =  208 bits (530), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 115/260 (44%), Positives = 161/260 (61%), Gaps = 15/260 (5%)

Query: 7   LPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLITS 66
           LP +CISNIIS T+PRDAC  + VS  F+SA +SDSVW+ FLPSDY  ++  S       
Sbjct: 50  LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSR----VF 105

Query: 67  LSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVG-TKGLSIAWGDEPNHWILTSLP 125
            SKK+LYF +C NP+++ +G  SF L+ E+GKKC+M+   K + I W   P +W   S+P
Sbjct: 106 SSKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISIP 165

Query: 126 ESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIE 185
           E+RF EV EL  V WF+V+  + T+ LS  T Y+AY+VFK           PV++ V + 
Sbjct: 166 EARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVGLV 225

Query: 186 GSDNGVRRRLLLDPS--------RNMARLSQDRRDGWIEIEMGEFFNENGDDGKLVCSLF 237
           G ++  R    + PS        R++ R ++ R+DGW+E E+G+FFNE+G D  +  S+ 
Sbjct: 226 GQESSQRHIYFVGPSDQRRDRETRDVTRPTK-RKDGWMEAELGQFFNESGCD-VVDTSIL 283

Query: 238 EFDSFITKRGLIIQGIEVRP 257
           E  +   KRGLIIQGIE RP
Sbjct: 284 EIKTPYWKRGLIIQGIEFRP 303

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ8|PP2B8_ARATH Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=4 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 108/272 (39%), Positives = 157/272 (57%), Gaps = 30/272 (11%)

Query: 7   LPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLITS 66
           LP EC+S I+S T+P+DAC L+ VS  F SA  SD VWE F+P +Y+ +IS S +     
Sbjct: 39  LPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRA--FKF 96

Query: 67  LSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLPE 126
           LSKK+LYF LC   ++I++G  S  ++  + K+C M+    L+IAWG+ P  W     P+
Sbjct: 97  LSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDPQ 156

Query: 127 SRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGF------------- 173
           +RF  VAEL  V  F+++  I +R++S +T Y+AY+V+K +   YGF             
Sbjct: 157 ARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGVVG 216

Query: 174 ------ARRPVDSGVYIEGSDNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENG 227
                  RR +    + E  D   RRR   D  +N+ +  + R+DGW+EI++GEFFNE G
Sbjct: 217 QDLEESCRRYI---CFDETMDEQFRRR---DRGKNLVK-PERRKDGWMEIKIGEFFNEGG 269

Query: 228 --DDGKLVCSLFEFDSFITKRGLIIQGIEVRP 257
             +D ++     E      KRGLIIQGIE+RP
Sbjct: 270 LLNDDEIEMVALEAKQRHWKRGLIIQGIEIRP 301

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPT8|PP2B1_ARATH F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1

 Score =  189 bits (479), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 163/304 (53%), Gaps = 55/304 (18%)

Query: 6   ALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLIT 65
           ALP +CIS +IS T+PRDAC ++ VS   KSAA SD VWE FLPS+Y  ++  S + L  
Sbjct: 34  ALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQSANHL-- 91

Query: 66  SLSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLP 125
             SKK+++  L  N +++ NG  SF ++  SGKKCYM+    L+I WGD P +W   ++P
Sbjct: 92  --SKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWITVP 149

Query: 126 ESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESK-YGFARRPVDSG--- 181
           ES+F +VAEL+ V WF+V+  I   +LS  T+Y+ Y+VFK    + YGF   PV++G   
Sbjct: 150 ESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAGVGF 209

Query: 182 ---------VYIEGSDNGVRRRLLLDPSRNMARLS------------------------- 207
                    VY E  +   R         + A +S                         
Sbjct: 210 VGKVATKKSVYFESGNADSRSATSHYSGISYAMVSRAFRMRRPWMQVQREEEEEVEGERE 269

Query: 208 --------QDRRDGWIEIEMGEFFNEN---GDDG--KLVCSLFEFDSFITKRGLIIQGIE 254
                   ++R DGW E+E+G+F+  N   GDDG  ++  S+ E  +   K GLIIQGIE
Sbjct: 270 RGMNVVGPKERVDGWSEVELGKFYINNGGCGDDGSDEIEISIMETQNGNWKSGLIIQGIE 329

Query: 255 VRPK 258
           +RP+
Sbjct: 330 IRPE 333

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FV02|SKIP3_ARATH F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2

 Score =  182 bits (463), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 104/262 (39%), Positives = 151/262 (57%), Gaps = 15/262 (5%)

Query: 6   ALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLIT 65
           +LP  CISNIIS T+P DAC  + VS +F+SA  SD VWE FLP+DY+ +I+ S      
Sbjct: 26  SLPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESLITPSR----V 81

Query: 66  SLSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSI-AWGDEPNHWILTSL 124
             SKK+LYF LC +P++I +G MS  L+  SGK+C M+    +++ +  D    ++    
Sbjct: 82  FSSKKELYFSLCNDPLLIEDGKMSLWLEKASGKRCIMLSATAMNLSSMADMSQRFLWIPC 141

Query: 125 PESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYI 184
           PESRF  VA L+  + F+    + TR+LSLRT Y+ Y+VFK  ++  GF    +++ V I
Sbjct: 142 PESRFETVAALREAYRFEFNCRMNTRVLSLRTRYSVYIVFKKADNWCGFKGVSIEAVVGI 201

Query: 185 EGSDNGVRRRLLLDP-------SRNMARLSQDRRDGWIEIEMGEFFNENG--DDGKLVCS 235
            G ++  R  +  D         R +    + R DGW+E E+GEF+NE G     ++  S
Sbjct: 202 VGEES-FRSFICFDTHGKGQARKRKVVAKPELREDGWMETEIGEFYNEGGLMSSDEVEIS 260

Query: 236 LFEFDSFITKRGLIIQGIEVRP 257
             E      KRGL+I GIE+RP
Sbjct: 261 TVEGKYAQQKRGLVILGIEIRP 282

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR0|PP2B6_ARATH Putative F-box protein PP2-B6 OS=Arabidopsis thaliana GN=PP2B6 PE=4 SV=1

 Score =  175 bits (443), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/262 (38%), Positives = 150/262 (57%), Gaps = 15/262 (5%)

Query: 7   LPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLITS 66
           LP +CISNIIS T+PRD C  + VS  F  A   DS+WE FLPS+Y+ +I          
Sbjct: 48  LPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIP----PWRVF 103

Query: 67  LSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLPE 126
            SKKDLYF LC +P+++ +G  SF L+  SGKKC ++  K L I  G+ P +W    L E
Sbjct: 104 SSKKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIELCE 163

Query: 127 SRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEG 186
           S F +V EL     F +   + T+ILSL T+Y+ Y+V+K  + ++G    P+  GV  +G
Sbjct: 164 SSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLPIQVGVGFKG 223

Query: 187 SDNGVRRRLLLDPSRNMAR--------LSQDRRDGWIEIEMGEFFNENGDDG--KLVCSL 236
            +   ++ +  D S +  +         S+ R DGW+E E+G+FFN+ G  G  ++  S+
Sbjct: 224 QEM-PKQFICFDESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDFFNDGGLMGFDEVEVSI 282

Query: 237 FEFDSFITKRGLIIQGIEVRPK 258
            +  S   K G++I+GIE RPK
Sbjct: 283 VDVTSPNLKCGVMIEGIEFRPK 304

Arabidopsis thaliana (taxid: 3702)

>sp|O80494|P2B15_ARATH F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=2

 Score =  170 bits (431), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 102/281 (36%), Positives = 146/281 (51%), Gaps = 28/281 (9%)

Query: 5   IALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLI 64
           + LP  C++ I+S TTP D    + VS VF+ A DSD VWE FLP+DY  +IS S     
Sbjct: 1   MMLPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHR 60

Query: 65  TSLSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSL 124
              SKK+LY  LC + I+I+NG   F ++  SGK  Y++ ++ LSI W D+ ++W  +  
Sbjct: 61  IFSSKKELYRCLCES-ILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPR 119

Query: 125 PESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYI 184
            +SRF E  +L    W ++   I+T  LS  TNY AYL+ K     YG    P ++ + +
Sbjct: 120 SDSRFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKVTSRAYGLDLVPAETSIKV 179

Query: 185 EGSDNGVRRRLL--LDPS----------------------RNMARLSQDRRDGWIEIEMG 220
              +  ++   L  LD                        R+  R  + R DGW+EIE+G
Sbjct: 180 GNGEKKIKSTYLSCLDNKKQQMERVFYGQREQRMATHEVVRSHRREPEVRDDGWMEIELG 239

Query: 221 EFFNENG---DDGKLVCSLFEFDSFITKRGLIIQGIEVRPK 258
           EF   +G   DD ++V SL E   +  K G+ I GIEVRPK
Sbjct: 240 EFETGSGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIEVRPK 280

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
118485882	267	unknown [Populus trichocarpa]	0.992	0.966	0.553	2e-76
224053426	243	f-box family protein [Populus trichocarp	0.907	0.971	0.538	4e-72
449487520	268	PREDICTED: putative F-box protein PP2-B1	0.988	0.958	0.516	1e-70
449432438	268	PREDICTED: putative F-box protein PP2-B1	0.988	0.958	0.516	3e-70
449433185	267	PREDICTED: putative F-box protein PP2-B1	0.984	0.958	0.509	4e-68
449518583	267	PREDICTED: putative F-box protein PP2-B1	0.984	0.958	0.494	2e-65
296088854	287	unnamed protein product [Vitis vinifera]	0.969	0.878	0.481	2e-61
296088859	311	unnamed protein product [Vitis vinifera]	0.965	0.807	0.466	5e-61
225470220	277	PREDICTED: F-box protein PP2-B10-like [V	0.965	0.906	0.466	6e-61
296088861	312	unnamed protein product [Vitis vinifera]	0.969	0.807	0.471	6e-60

>gi|118485882|gb|ABK94787.1| unknown [Populus trichocarpa]

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 146/264 (55%), Positives = 190/264 (71%), Gaps = 6/264 (2%)

Query: 1   MDITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSV 60
           MD++  LP EC+++IIS T+PRDAC  ++VS  F+SAADSD+VW+ FLPSD+ +IIS+S 
Sbjct: 1   MDMSQVLPEECLAHIISFTSPRDACGSALVSRNFRSAADSDAVWKGFLPSDHVEIISSSP 60

Query: 61  SSL---ITSLSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPN 117
           +S    +T+LSKK+LYFHLC NPI++NNG MSFAL+   GKKCYM+G +GLSI WGD P+
Sbjct: 61  ASSSSQLTALSKKELYFHLCNNPILVNNGIMSFALEKHGGKKCYMIGARGLSITWGDTPD 120

Query: 118 HWILTSLP-ESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARR 176
           +W    LP +SRF EVAEL+YVWW DV+  I+ +I S +T Y AYLVFK  +S  GF  R
Sbjct: 121 YWTWKPLPDQSRFSEVAELRYVWWLDVRGRIDAKIFSPKTTYAAYLVFKLTDSTRGFDER 180

Query: 177 PVDSGVYIEGSDNGVRRRLLLD--PSRNMARLSQDRRDGWIEIEMGEFFNENGDDGKLVC 234
            V+  V  E S    +  + LD  P  +M  L ++R DGW+EIEMGEFF +N DDG +V 
Sbjct: 181 LVELSVNFEESVGEEKLHVFLDVPPDYDMPPLPRERSDGWMEIEMGEFFYDNEDDGSVVA 240

Query: 235 SLFEFDSFITKRGLIIQGIEVRPK 258
            L E D++ TK GLII+GIE RPK
Sbjct: 241 YLREVDNYTTKNGLIIEGIEFRPK 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053426|ref|XP_002297813.1| f-box family protein [Populus trichocarpa] gi|222845071|gb|EEE82618.1| f-box family protein [Populus trichocarpa]

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 141/262 (53%), Positives = 180/262 (68%), Gaps = 26/262 (9%)

Query: 1   MDITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSV 60
           MD++  LP EC+++IIS T+PRDAC  ++VS  F+SAADSD+VW+ FLPSD+ +IIS+S 
Sbjct: 1   MDMSQVLPEECLAHIISFTSPRDACGSALVSRNFRSAADSDAVWKGFLPSDHVEIISSSP 60

Query: 61  SSL---ITSLSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPN 117
           +S    +T+LSKK+LYFHLC NPI++NNG MSFAL+   GKKCYM+G +GLSI WGD P+
Sbjct: 61  ASSSSQLTALSKKELYFHLCNNPILVNNGIMSFALEKHGGKKCYMIGARGLSITWGDTPD 120

Query: 118 HWILTSLP-ESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARR 176
           +W    LP +SRF EVAEL+YVWW DV+  I+ +I S +T Y AYLVFK  +S  GF  R
Sbjct: 121 YWTWKPLPDQSRFSEVAELRYVWWLDVRGRIDAKIFSPKTTYAAYLVFKLTDSTRGFDER 180

Query: 177 PVDSGVYIEGSDNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDGKLVCSL 236
            V+  V  E S                      R DGW+EIEMGEFF +N DDG +V  L
Sbjct: 181 LVELSVNFEES----------------------RSDGWMEIEMGEFFYDNEDDGSVVAYL 218

Query: 237 FEFDSFITKRGLIIQGIEVRPK 258
            E D++ TK GLII+GIE RPK
Sbjct: 219 REVDNYTTKNGLIIEGIEFRPK 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487520|ref|XP_004157667.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 138/267 (51%), Positives = 184/267 (68%), Gaps = 10/267 (3%)

Query: 1   MDITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSV 60
           MDI   LPAEC+S+I++ T+P+DACR +V SP F+SAADSD++W  FLPSDY+QIIS + 
Sbjct: 1   MDIN-QLPAECLSSILAFTSPKDACRSAVASPAFRSAADSDALWITFLPSDYRQIISQAS 59

Query: 61  SSLITSLS----KKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEP 116
           SS  +S      KK LYF L  + + I +G  SF L+ ESGKKCYM+G + L I WG+ P
Sbjct: 60  SSSTSSFLNSLSKKALYFRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLDIIWGNSP 119

Query: 117 NHWILTSLPESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKY---GF 173
            +W   S+P SRF EVAEL+ VWW ++K  IE R LS +T Y AY VFK VE +Y   GF
Sbjct: 120 QYWTWKSIPTSRFREVAELQVVWWLEIKGKIEARSLSPKTKYAAYFVFKLVEDRYSRRGF 179

Query: 174 ARRPVDSGVYIEGS--DNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDGK 231
             RPV   V+ EG+  +   R+R++LDP      + ++R DGW+E+EMGE FNE GDDG 
Sbjct: 180 QIRPVSLEVHFEGAEVEEDGRKRVILDPPEGSLVVCEERSDGWMEVEMGEIFNELGDDGT 239

Query: 232 LVCSLFEFDSFITKRGLIIQGIEVRPK 258
           ++  L + D+FI+K GLI++GIE+RPK
Sbjct: 240 IIFHLKQIDNFISKGGLIVEGIEIRPK 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432438|ref|XP_004134006.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 138/267 (51%), Positives = 183/267 (68%), Gaps = 10/267 (3%)

Query: 1   MDITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSV 60
           MDI   LPAEC+S I++ T+P+DACR +VVSP F+SAADSD++W  FLPSDY+QIIS + 
Sbjct: 1   MDIN-QLPAECLSCILAFTSPKDACRSAVVSPAFRSAADSDALWTTFLPSDYRQIISQAS 59

Query: 61  SSLITSLS----KKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEP 116
           SS  +S      KK LY  L  + + I +G  SF L+ ESGKKCYM+G + L I WG+ P
Sbjct: 60  SSSTSSFLNSLSKKALYLRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLDIIWGNSP 119

Query: 117 NHWILTSLPESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKY---GF 173
            +W   S+P SRF EVAEL+ VWW ++K  IE R LS +T Y AY VFK VE +Y   GF
Sbjct: 120 QYWTWKSIPTSRFREVAELQVVWWLEIKGKIEARSLSPKTKYAAYFVFKLVEDRYSRRGF 179

Query: 174 ARRPVDSGVYIEGS--DNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDGK 231
             RPV   V+ EG+  +   R+R++LDP      + ++R DGW+E+EMGE FNE GDDG 
Sbjct: 180 QIRPVSLEVHFEGAEVEEDGRKRVILDPPEGSLVVCEERSDGWMEVEMGEIFNELGDDGT 239

Query: 232 LVCSLFEFDSFITKRGLIIQGIEVRPK 258
           ++  L + D+FI+K GLI++GIE+RPK
Sbjct: 240 IIFHLKQIDNFISKGGLIVEGIEIRPK 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433185|ref|XP_004134378.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 136/267 (50%), Positives = 178/267 (66%), Gaps = 11/267 (4%)

Query: 1   MDITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSV 60
           MDI   LPAECIS+I++ T+P+DACR +V SP F+SAADSD++W  FLPSDY+QIIS + 
Sbjct: 1   MDIN-QLPAECISSILAFTSPKDACRSAVASPAFRSAADSDAIWTTFLPSDYRQIISQAS 59

Query: 61  SSLITSLS----KKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEP 116
           SS  +S      KK LY  L  + + I +G  SF L+ ESGKKCYM+G + L I WG  P
Sbjct: 60  SSSTSSFLNSLSKKALYLRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLEIVWGSSP 119

Query: 117 NHWILTSLPESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKY---GF 173
            +W   S+P SRF EVAEL+YVWW ++K  IE R LS +T Y AY VFKF E  +   GF
Sbjct: 120 AYWTWQSIPTSRFSEVAELQYVWWLEIKGKIEGRNLSPKTKYAAYFVFKFKEGDFQHDGF 179

Query: 174 ARRPVDSGVYIEGSDNGV--RRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDGK 231
             +PV   VY EG + G    + +LLDP      + ++R DGW+E+EMGEFFNE GDDG 
Sbjct: 180 GTKPVSLEVYFEGEEVGEDGTKMVLLDPPEGSPVVCKERSDGWMEVEMGEFFNELGDDGI 239

Query: 232 LVCSLFEFDSFITKRGLIIQGIEVRPK 258
           ++  L + D  + K GLI++G+E+RPK
Sbjct: 240 IIFHLMQIDR-LRKGGLIVEGVEIRPK 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518583|ref|XP_004166316.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 132/267 (49%), Positives = 177/267 (66%), Gaps = 11/267 (4%)

Query: 1   MDITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSV 60
           MDI   LPAEC+S I++ T+P+DACR +VVSP F+SAADSD++W  FLPSDY+QIIS + 
Sbjct: 1   MDIN-QLPAECLSCILAFTSPKDACRSAVVSPAFRSAADSDALWTTFLPSDYRQIISQAS 59

Query: 61  SSLITSLS----KKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEP 116
           SS  +S      KK LY  L  + + I +G   F L+  SGKKCYM+G + L I WG  P
Sbjct: 60  SSSTSSFLNSLSKKALYLRLSDHLLFIGSGNSGFVLEKGSGKKCYMIGARDLEIVWGSSP 119

Query: 117 NHWILTSLPESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVE---SKYGF 173
            +W   S+P SRF EVAEL+YVWW ++K  IE R LS +T Y AY VFK VE    ++ F
Sbjct: 120 EYWTWQSIPTSRFSEVAELQYVWWLEIKGKIEGRNLSPKTKYAAYFVFKLVEDNFCRHVF 179

Query: 174 ARRPVDSGVYIEGS--DNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDGK 231
              PV   V+ EG+  +   R+R++LDP    + +  +R DGW+E+EMGEFFNE GDDG 
Sbjct: 180 ETTPVSLEVHFEGAEVEEDRRKRVILDPLEGSSVVCVERSDGWMEVEMGEFFNECGDDGS 239

Query: 232 LVCSLFEFDSFITKRGLIIQGIEVRPK 258
           ++  L + D  + K GLI++G+E+RPK
Sbjct: 240 IIFHLMQIDR-LRKGGLIVEGVEIRPK 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088854|emb|CBI38318.3| unnamed protein product [Vitis vinifera]

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 127/264 (48%), Positives = 173/264 (65%), Gaps = 12/264 (4%)

Query: 6   ALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSV--SSL 63
           +LP  CI+++++LT+PRD CR+S V+ VF SAA+SD++WE FLP+DY++II+ S   SS 
Sbjct: 22  SLPEGCIADVLALTSPRDVCRMSAVASVFLSAAESDALWERFLPADYREIIARSSESSSW 81

Query: 64  ITSLSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTS 123
               SKK+LYF LC  P++I+ G  SF L+  SGKKCYM+ ++ L+I WGD P +W  TS
Sbjct: 82  RHFSSKKELYFTLCDYPLLIDEGKKSFWLEKRSGKKCYMLASRELTIIWGDTPGYWEWTS 141

Query: 124 LPESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVY 183
           LPESRFPEVA L+ V WF+++  I T +LS RTNY AYLVF    S +GF   PV+S + 
Sbjct: 142 LPESRFPEVAYLQAVCWFEIRGKINTCMLSPRTNYAAYLVFHAGRS-HGFEDVPVESSIE 200

Query: 184 IEGSDNGVRRRLLLDPSRNMARLS---------QDRRDGWIEIEMGEFFNENGDDGKLVC 234
           I G++   R   L    +N    S         + R D W EIE+GEFF E G+D +L  
Sbjct: 201 IVGNETTTRVIYLARYRKNEEPTSSIRSDLPYPKKREDSWFEIELGEFFIEGGEDTELEI 260

Query: 235 SLFEFDSFITKRGLIIQGIEVRPK 258
           +L E  +   K GLI++GIE+RPK
Sbjct: 261 TLMEVKAGHWKDGLIVEGIEIRPK 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088859|emb|CBI38323.3| unnamed protein product [Vitis vinifera]

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 119/255 (46%), Positives = 171/255 (67%), Gaps = 4/255 (1%)

Query: 6   ALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLIT 65
           ALP +CI+ I++ T+ RDACR+S VSP F SAA+SD++WE FLP+DY++II  S  S   
Sbjct: 56  ALPEDCIAGILARTSIRDACRMSTVSPEFLSAAESDALWETFLPADYREIIGRSSESSAR 115

Query: 66  S--LSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTS 123
               SKK+L+F LC +P++I+ G  SF L  ESGKKCYM+  + L+I W + P +W   S
Sbjct: 116 QDFSSKKELFFRLCNSPLLIDGGKKSFWLDKESGKKCYMIAARELTIIWSETPRYWTWIS 175

Query: 124 LPESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVY 183
            P+SRF EVA LK VWWF +K  + T +LS  TNY AYL+F+  +   GF   P++S + 
Sbjct: 176 PPQSRFTEVANLKIVWWFVIKGKMNTCMLSPCTNYAAYLIFQRNDIFDGFEDNPIESSIG 235

Query: 184 IEGSDNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDGKLVCSLFEFDSFI 243
           + G +   ++ + LDP  +++  +  R DGW E+E+GEFFNE  +  +L  S+ E ++FI
Sbjct: 236 VTGGETA-KKVIYLDPEHDISP-NPTRIDGWYEVELGEFFNEGRESVELEMSIMEVNTFI 293

Query: 244 TKRGLIIQGIEVRPK 258
            K GL+I+GIE+RPK
Sbjct: 294 GKSGLLIEGIEIRPK 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470220|ref|XP_002270580.1| PREDICTED: F-box protein PP2-B10-like [Vitis vinifera]

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 119/255 (46%), Positives = 171/255 (67%), Gaps = 4/255 (1%)

Query: 6   ALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLIT 65
           ALP +CI+ I++ T+ RDACR+S VSP F SAA+SD++WE FLP+DY++II  S  S   
Sbjct: 22  ALPEDCIAGILARTSIRDACRMSTVSPEFLSAAESDALWETFLPADYREIIGRSSESSAR 81

Query: 66  S--LSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTS 123
               SKK+L+F LC +P++I+ G  SF L  ESGKKCYM+  + L+I W + P +W   S
Sbjct: 82  QDFSSKKELFFRLCNSPLLIDGGKKSFWLDKESGKKCYMIAARELTIIWSETPRYWTWIS 141

Query: 124 LPESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVY 183
            P+SRF EVA LK VWWF +K  + T +LS  TNY AYL+F+  +   GF   P++S + 
Sbjct: 142 PPQSRFTEVANLKIVWWFVIKGKMNTCMLSPCTNYAAYLIFQRNDIFDGFEDNPIESSIG 201

Query: 184 IEGSDNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDGKLVCSLFEFDSFI 243
           + G +   ++ + LDP  +++  +  R DGW E+E+GEFFNE  +  +L  S+ E ++FI
Sbjct: 202 VTGGETA-KKVIYLDPEHDISP-NPTRIDGWYEVELGEFFNEGRESVELEMSIMEVNTFI 259

Query: 244 TKRGLIIQGIEVRPK 258
            K GL+I+GIE+RPK
Sbjct: 260 GKSGLLIEGIEIRPK 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088861|emb|CBI38325.3| unnamed protein product [Vitis vinifera]

 Score =  236 bits (603), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 125/265 (47%), Positives = 164/265 (61%), Gaps = 13/265 (4%)

Query: 6   ALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSV-SSLI 64
           +LP EC++ IIS T+P DA R+SVVS   + AADSD+VWE FLP D++ II+ +  SS  
Sbjct: 46  SLPLECVTEIISRTSPPDASRMSVVSTDLRFAADSDAVWEGFLPKDFQSIIAGAAGSSRA 105

Query: 65  TSLSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSL 124
              SKK+LY  L   PI+I  G  SF+++  SGKKCYM+  + L+I WGD P +W   SL
Sbjct: 106 EVQSKKELYLRLSDEPILIEGGLKSFSIEKRSGKKCYMIAARALTIEWGDTPMYWKWISL 165

Query: 125 PESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYI 184
           P+SRF EVAEL  V WF+++  I T +L L+TNY AYLVF      YGF   PV+  + I
Sbjct: 166 PQSRFKEVAELISVCWFEIRGRINTCLLCLKTNYAAYLVFNSTTETYGFEYHPVEVSIGI 225

Query: 185 EGSDNGVR-----------RRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDGKLV 233
            G     +           RR  + P R   +  + R DGW+EIE+GEFFNE GD+ +L 
Sbjct: 226 IGGRISTQSVYLNPSKTQTRRFPVVPRRGNCQHPKKREDGWLEIELGEFFNEGGDE-ELE 284

Query: 234 CSLFEFDSFITKRGLIIQGIEVRPK 258
            S+ E  +   K GLIIQGIE+RPK
Sbjct: 285 MSVLEVKAGNWKCGLIIQGIEIRPK 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
TAIR|locus:2016349	257	PP2-B11 "phloem protein 2-B11"	0.946	0.957	0.439	8e-53
TAIR|locus:2056231	272	PP2-B10 "phloem protein 2-B10"	0.946	0.904	0.424	1.5e-51
TAIR|locus:2056181	320	MEE66 "AT2G02240" [Arabidopsis	0.946	0.768	0.437	6.5e-51
TAIR|locus:2056196	310	PP2-B2 "phloem protein 2-B2" [	0.946	0.793	0.436	7.4e-50
TAIR|locus:2153954	251	PP2-B12 "phloem protein 2-B12"	0.930	0.964	0.415	8.5e-49
TAIR|locus:2056191	336	PP2-B1 "phloem protein 2-B1" [	0.680	0.526	0.445	2.9e-48
TAIR|locus:2056201	305	PP2-B8 "phloem protein 2-B8" [	0.953	0.813	0.383	1.9e-44
TAIR|locus:2056166	307	PP2-B6 "phloem protein 2-B6" [	0.95	0.804	0.381	2.8e-41
TAIR|locus:2011791	282	PP2-B14 "phloem protein 2-B14"	0.846	0.780	0.346	1.1e-40
TAIR|locus:2011806	284	PP2-B13 "phloem protein 2-B13"	0.846	0.774	0.342	9.4e-40

TAIR|locus:2016349 PP2-B11 "phloem protein 2-B11" [Arabidopsis thaliana (taxid:3702)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 113/257 (43%), Positives = 155/257 (60%)

Query:     7 LPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQXXXXXXXXXXXX 66
             LP +CI+ I+SLTTP D CRLS VS +F+SAA SD VW +FLP+D+              
Sbjct:     4 LPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFP----AGFAAPAGL 59

Query:    67 XXKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLPE 126
               +K L+F L  NP++IN   +SF+L+ +SG KCYM+  + L+I WG E  +W   SLP 
Sbjct:    60 PTRKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWISLPN 119

Query:   127 SRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYI-- 184
             +RF EVAEL  VWW ++   I   +LS  T Y AY VFK+  S YGF R+PV++ + +  
Sbjct:   120 TRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGF-RQPVETSLVLAD 178

Query:   185 -EGSDNGVRRR---LLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDGKLVCSLFEFD 240
              E +DN V+     L+ D      +    RRDGW E+E+G+FF   GD G++  SL E  
Sbjct:   179 TESTDNVVQPSMISLMQDSGGEEGQSPVLRRDGWYEVELGQFFKRRGDLGEIEMSLKETK 238

Query:   241 SFITKRGLIIQGIEVRP 257
                 K+GLI+ GIE+RP
Sbjct:   239 GPYEKKGLIVYGIEIRP 255

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056231 PP2-B10 "phloem protein 2-B10" [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 110/259 (42%), Positives = 154/259 (59%)

Query:     6 ALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQXXXXXXXXXXX 65
             + P +CIS IIS T PRDAC  + VS  F+S   SD +WE FLP+DY+            
Sbjct:    16 SFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFSS- 74

Query:    66 XXXKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLP 125
                KK+LYF LC +P++ ++   S  L+  SGK+C M+    LSI WGD P +W    +P
Sbjct:    75 ---KKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIP 131

Query:   126 ESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIE 185
             ESRF +VA+L+ V WF+++    TR+LS RT Y+AY+VFK V+  YGF    +++ V + 
Sbjct:   132 ESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAVGVV 191

Query:   186 GSDNGVRRRLLLDPS-----RNMARLSQDRRDGWIEIEMGEFFNENG--DDGKLVCSLFE 238
             G +   RR +    +     RN+ +  Q R DGW+EIE+GEFFN+ G  D+ ++  S  E
Sbjct:   192 GQEPS-RRLICFSEAIRRGRRNVVKPKQ-REDGWMEIELGEFFNDGGIMDNDEIEMSALE 249

Query:   239 FDSFITKRGLIIQGIEVRP 257
                   K GLIIQGIE+RP
Sbjct:   250 TKQLNRKCGLIIQGIEIRP 268

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056181 MEE66 "AT2G02240" [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 113/258 (43%), Positives = 152/258 (58%)

Query:     7 LPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQXXXXXXXXXXXX 66
             LP +CISNIIS T+PRDAC  + VS  F+SA  SD VW+ FLP +Y+             
Sbjct:    64 LPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRVFAS-- 121

Query:    67 XXKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLPE 126
               KK+LYF LC NP++I +G  SF L+  SGK+C M+ +K L I WG  P +W   S+PE
Sbjct:   122 --KKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPE 179

Query:   127 SRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEG 186
             SRF ++AEL  V WF+++     R+LS  T Y+AY+VFK  +   G    PV+ G+ + G
Sbjct:   180 SRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGLGLVG 239

Query:   187 SDNGVRRRLLLDP-SRNMARLSQD------RRDGWIEIEMGEFFNENGDDGKLVCSLFEF 239
              ++  R    + P  R   R ++D      R DGW+E E+GEFFNE   D ++  S+ E 
Sbjct:   240 QESSKRFIYFIGPRDRRGRRETRDVTKPDQREDGWMEAELGEFFNEERCD-EIEFSVIEI 298

Query:   240 DSFITKRGLIIQGIEVRP 257
              S   K GLIIQGIE RP
Sbjct:   299 KSPSWKSGLIIQGIEFRP 316

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2056196 PP2-B2 "phloem protein 2-B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 113/259 (43%), Positives = 156/259 (60%)

Query:     7 LPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQXXXXXXXXXXXX 66
             LP +CISNIIS T+PRDAC  + VS  F+SA +SDSVW+ FLPSDY              
Sbjct:    50 LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRVFSS-- 107

Query:    67 XXKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTK-GLSIAWGDEPNHWILTSLP 125
               KK+LYF +C NP+++ +G  SF L+ E+GKKC+M+  K  + I W   P +W   S+P
Sbjct:   108 --KKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISIP 165

Query:   126 ESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIE 185
             E+RF EV EL  V WF+V+  + T+ LS  T Y+AY+VFK           PV++ V + 
Sbjct:   166 EARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVGLV 225

Query:   186 GSDNGVRRRLLLDPS-RNMARLSQD------RRDGWIEIEMGEFFNENGDDGKLVCSLFE 238
             G ++  R    + PS +   R ++D      R+DGW+E E+G+FFNE+G D  +  S+ E
Sbjct:   226 GQESSQRHIYFVGPSDQRRDRETRDVTRPTKRKDGWMEAELGQFFNESGCD-VVDTSILE 284

Query:   239 FDSFITKRGLIIQGIEVRP 257
               +   KRGLIIQGIE RP
Sbjct:   285 IKTPYWKRGLIIQGIEFRP 303

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2153954 PP2-B12 "phloem protein 2-B12" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 105/253 (41%), Positives = 148/253 (58%)

Query:     7 LPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQXXXXXXXXXXXX 66
             LP ECI+ +IS T+P DACR+S VS + +SAADS++ WE FLPSDY+             
Sbjct:     6 LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNSLSRFS-- 63

Query:    67 XXKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLPE 126
                K L+   C +P++I +G  SF ++  SGKKC+M+  + L I W D P  WI  S+P+
Sbjct:    64 --NKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSIPD 121

Query:   127 SRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVE-SKYGFARRPVDSGVYIE 185
             SRF EVA L  V WF+++  I T +LS  TNY+AYLVFK  E   +GF   P++      
Sbjct:   122 SRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLEVSFRST 181

Query:   186 GSDNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDGKLVCSLFEFDSFITK 245
              ++    RR+ L          + R DGW+EIE+GE++    DD ++  S+ E      K
Sbjct:   182 RTEVYNNRRVFLKSGTQ-----ESREDGWLEIELGEYY-VGFDDEEIEMSVLETREGGWK 235

Query:   246 RGLIIQGIEVRPK 258
              G+I+QGIE+RPK
Sbjct:   236 GGIIVQGIEIRPK 248

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056191 PP2-B1 "phloem protein 2-B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
 Identities = 81/182 (44%), Positives = 112/182 (61%)

Query:     6 ALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQXXXXXXXXXXX 65
             ALP +CIS +IS T+PRDAC ++ VS   KSAA SD VWE FLPS+Y             
Sbjct:    34 ALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQSANHLS- 92

Query:    66 XXXKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLP 125
                KK+++  L  N +++ NG  SF ++  SGKKCYM+    L+I WGD P +W   ++P
Sbjct:    93 ---KKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWITVP 149

Query:   126 ESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESK-YGFARRPVDSGVYI 184
             ES+F +VAEL+ V WF+V+  I   +LS  T+Y+ Y+VFK    + YGF   PV++GV  
Sbjct:   150 ESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAGVGF 209

Query:   185 EG 186
              G
Sbjct:   210 VG 211

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056201 PP2-B8 "phloem protein 2-B8" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 102/266 (38%), Positives = 151/266 (56%)

Query:     7 LPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQXXXXXXXXXXXX 66
             LP EC+S I+S T+P+DAC L+ VS  F SA  SD VWE F+P +Y+             
Sbjct:    39 LPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFKFLS 98

Query:    67 XXKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLPE 126
               KK+LYF LC   ++I++G  S  ++  + K+C M+    L+IAWG+ P  W     P+
Sbjct:    99 --KKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDPQ 156

Query:   127 SRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEG 186
             +RF  VAEL  V  F+++  I +R++S +T Y+AY+V+K +   YGF    V+  V + G
Sbjct:   157 ARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGVVG 216

Query:   187 SD--NGVRRRLLLDPS-----------RNMARLSQDRRDGWIEIEMGEFFNENG--DDGK 231
              D     RR +  D +           +N+ +  + R+DGW+EI++GEFFNE G  +D +
Sbjct:   217 QDLEESCRRYICFDETMDEQFRRRDRGKNLVK-PERRKDGWMEIKIGEFFNEGGLLNDDE 275

Query:   232 LVCSLFEFDSFITKRGLIIQGIEVRP 257
             +     E      KRGLIIQGIE+RP
Sbjct:   276 IEMVALEAKQRHWKRGLIIQGIEIRP 301

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056166 PP2-B6 "phloem protein 2-B6" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 100/262 (38%), Positives = 147/262 (56%)

Query:     7 LPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQXXXXXXXXXXXX 66
             LP +CISNIIS T+PRD C  + VS  F  A   DS+WE FLPS+Y+             
Sbjct:    48 LPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPWRVFSS-- 105

Query:    67 XXKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLPE 126
               KKDLYF LC +P+++ +G  SF L+  SGKKC ++  K L I  G+ P +W    L E
Sbjct:   106 --KKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIELCE 163

Query:   127 SRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEG 186
             S F +V EL     F +   + T+ILSL T+Y+ Y+V+K  + ++G    P+  GV  +G
Sbjct:   164 SSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLPIQVGVGFKG 223

Query:   187 SDNGVRRRLLLDPSRNMAR--------LSQDRRDGWIEIEMGEFFNENGDDG--KLVCSL 236
              +   ++ +  D S +  +         S+ R DGW+E E+G+FFN+ G  G  ++  S+
Sbjct:   224 QEMP-KQFICFDESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDFFNDGGLMGFDEVEVSI 282

Query:   237 FEFDSFITKRGLIIQGIEVRPK 258
              +  S   K G++I+GIE RPK
Sbjct:   283 VDVTSPNLKCGVMIEGIEFRPK 304

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2011791 PP2-B14 "phloem protein 2-B14" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
 Identities = 79/228 (34%), Positives = 113/228 (49%)

Query:     7 LPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQXXXXXXXXXXXX 66
             LP  CI+NI++ T+P DA   S VS VF+ A DSD VWE FLPSDYK             
Sbjct:     4 LPEACIANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSDYKSLISQSTDHHWNI 63

Query:    67 XXKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLPE 126
               KK++Y  LC + ++I+N    F +   SGK  Y++  + +SI   D  ++W  +++ +
Sbjct:    64 SSKKEIYRCLC-DSLLIDNARKLFKINKFSGKISYVLSARDISITHSDHASYWSWSNVSD 122

Query:   127 SRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEG 186
             SRF E AEL      +++  I+TR+LS  T Y AYL+ K  +  YG    P ++ +  + 
Sbjct:   123 SRFSESAELIITDRLEIEGKIQTRVLSANTRYGAYLIVKVTKGAYGLDLVPAETSIKSKN 182

Query:   187 SDNGVRRRLL--LDPSRN-MARLSQDRRDGWIEIEMGEFFNENGDDGK 231
                      L  LD  +  M RL    R    E  M       G DGK
Sbjct:   183 GQISKSATYLCCLDEKKQQMKRLFYGNR----EERMAMTVEAVGGDGK 226

GO:0005634 "nucleus" evidence=ISM;IPI

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IPI

TAIR|locus:2011806 PP2-B13 "phloem protein 2-B13" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
 Identities = 78/228 (34%), Positives = 111/228 (48%)

Query:     7 LPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQXXXXXXXXXXXX 66
             LP  C++NI++ T+P DA   S VS VF+ A DSD VWE FLPS YK             
Sbjct:     4 LPEACVANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSHYKSLISQSTDHHRIF 63

Query:    67 XXKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHWILTSLPE 126
               KK++Y  LC + ++I+N    F +   SGK  Y++  + +SI + D  ++   +++ +
Sbjct:    64 SSKKEIYRCLC-DSLLIDNARKLFKINKFSGKISYILSARDISITYSDHASYCSWSNVSD 122

Query:   127 SRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEG 186
             SRF E AEL      ++K  I+T +LS  T Y AYL+ K     YG    P ++ V  + 
Sbjct:   123 SRFSESAELITTDRLEIKGKIQTTVLSPNTKYGAYLIMKVTNGAYGLDLVPAETSVKSKN 182

Query:   187 SDNGVRRRLL--LDPSRN-MARLSQDRRDGWIEIEMGEFFNENGDDGK 231
               N      L  LD  +  M RL    R    E  M       G DGK
Sbjct:   183 GQNNKNTTYLCCLDEKKQQMKRLFYGNR----EERMAMTVEAVGGDGK 226

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q949S5	P2B11_ARATH	No assigned EC number	0.4474	0.9461	0.9571	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	260
pfam14299	154	pfam14299, PP2, Phloem protein 2	5e-67
pfam00646	48	pfam00646, F-box, F-box domain	5e-04
pfam12937	47	pfam12937, F-box-like, F-box-like	0.003

>gnl|CDD|222661 pfam14299, PP2, Phloem protein 2

 Score =  204 bits (521), Expect = 5e-67
 Identities = 77/162 (47%), Positives = 101/162 (62%), Gaps = 8/162 (4%)

Query: 97  GKKCYMVGTKGLSIAWGDEPNHWILTSLPESRFPEVAELKYVWWFDVKAMIETRILSLRT 156
           GKKCYM+  + LSI WGD+P +W    LPESRF EVAEL  V W +++  I TR+LS  T
Sbjct: 1   GKKCYMLSARALSITWGDDPRYWRWIPLPESRFSEVAELLDVCWLEIRGKINTRMLSPGT 60

Query: 157 NYTAYLVFKFVESKYGFARRPVDSGVYIEGSDNGVRRRLLLDPSRNMARLSQDRRDGWIE 216
            Y+AYLVFK  +  YG+  +PV+  V      +G + R           L + R DGW+E
Sbjct: 61  TYSAYLVFKLADRAYGWDEKPVEFSV---SVPDGQKSR-----QERYVCLPEKRGDGWME 112

Query: 217 IEMGEFFNENGDDGKLVCSLFEFDSFITKRGLIIQGIEVRPK 258
           IE+GEFFNE G+DG++  S+ E D    K GLI+ GIE+RPK
Sbjct: 113 IEVGEFFNEGGEDGEVEFSMREVDGGHWKGGLIVDGIEIRPK 154

Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in the phloem sap. PP2 is translocated in the assimilate stream where its lectin activity or RNA-binding properties can exert effects over long distances. Length = 154

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 16/42 (38%), Positives = 25/42 (59%)

Query: 7  LPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFL 48
          LP + +  I+S   P+D  RLS+VS  ++S  DS  +W+  L
Sbjct: 6  LPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRL 47

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 34.4 bits (80), Expect = 0.003
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 7  LPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENF 47
          LP E +  I S   PRD  RL++V   ++  A  DS+W   
Sbjct: 4  LPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRRL 44

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	260
PF14299	154	PP2: Phloem protein 2	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.74
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.35
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.31
KOG2997	366	consensus F-box protein FBX9 [General function pre	92.56
PF06881	109	Elongin_A: RNA polymerase II transcription factor	89.41
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	85.06
KOG4408	386	consensus Putative Mg2+ and Co2+ transporter CorD	84.96
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	83.74
PF02018	131	CBM_4_9: Carbohydrate binding domain; InterPro: IP	82.32
KOG3926	332	consensus F-box proteins [Amino acid transport and	80.5

>PF14299 PP2: Phloem protein 2

Probab=100.00  E-value=1.8e-66  Score=437.48  Aligned_cols=152  Identities=49%  Similarity=0.951  Sum_probs=144.5

Q ss_pred             CCeeEEeecccceeeecCCCCceeEeeCCCCCcccceeeeeeeEEEEEEEEeeeecCCCceeEEEEEEEEccCcCCCCcc
Q 024966           97 GKKCYMVGTKGLSIAWGDEPNHWILTSLPESRFPEVAELKYVWWFDVKAMIETRILSLRTNYTAYLVFKFVESKYGFARR  176 (260)
Q Consensus        97 g~kCymLsAR~L~ItWgdd~~yW~W~~~~~SrF~EVAeL~~VcWLeI~G~i~~~~LSp~t~Y~ay~v~kl~d~~~Gw~~~  176 (260)
                      |+||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++|||+|+|+||||||+++++|||+..
T Consensus         1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~   80 (154)
T PF14299_consen    1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP   80 (154)
T ss_pred             CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CeEEEEEEecCCcc--eeEEEEccCCcccccccccccCCeEEEEeeeEEecCCCCcEEEEEEEEEeCCcccccEEEEEEE
Q 024966          177 PVDSGVYIEGSDNG--VRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDGKLVCSLFEFDSFITKRGLIIQGIE  254 (260)
Q Consensus       177 pv~~sv~~~~~g~~--~~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~~~~~~ev~fs~~e~~~~~wK~GLiv~Gie  254 (260)
                      ||+++|++++ ++.  +.+.+++         |++|+|||||||+|||+++++++++|+|+|+|+++++||+||||+|||
T Consensus        81 pv~~~v~~~~-~~~~~~~~~~~~---------~~~r~dgW~Eie~GeF~~~~~~~~ev~f~~~E~~~~~wK~GLiv~Gie  150 (154)
T PF14299_consen   81 PVEFSVKVPD-GEKYEQERKVCL---------PKERGDGWMEIELGEFFNEGGDDGEVEFSMYEVDSGHWKGGLIVEGIE  150 (154)
T ss_pred             CEEEEEEeCC-CccccceeeEEc---------CCCCCCCEEEEEcceEEecCCCCcEEEEEEEEecCCcccCeEEEEEEE
Confidence            9999999988 544  4556665         668899999999999999988999999999999999999999999999


Q ss_pred             EEec
Q 024966          255 VRPK  258 (260)
Q Consensus       255 IRPk  258 (260)
                      ||||
T Consensus       151 IRPK  154 (154)
T PF14299_consen  151 IRPK  154 (154)
T ss_pred             EecC
Confidence            9998

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.74  E-value=7.2e-09  Score=69.99  Aligned_cols=45  Identities=33%  Similarity=0.590  Sum_probs=40.2

Q ss_pred             ccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccCC
Q 024966            4 TIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFL   48 (260)
Q Consensus         4 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fl   48 (260)
                      +.+||+|.+..|+++++|.|.+++++||+.|+.++.++.+|+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~   45 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC   45 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence            468999999999999999999999999999999999999998764

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.35  E-value=1.6e-07  Score=63.19  Aligned_cols=44  Identities=36%  Similarity=0.625  Sum_probs=38.6

Q ss_pred             ccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccC
Q 024966            4 TIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENF   47 (260)
Q Consensus         4 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~f   47 (260)
                      +.+||++++..|++++++.|.++++.||+.||.+++++..|..+
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            46899999999999999999999999999999999999999765

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.31  E-value=4.5e-07  Score=58.38  Aligned_cols=40  Identities=38%  Similarity=0.590  Sum_probs=38.6

Q ss_pred             cchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhcc
Q 024966            7 LPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWEN   46 (260)
Q Consensus         7 Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~   46 (260)
                      ||++++..|+++++|.|.+++++||+.||.+++++.+|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999975

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=92.56  E-value=0.041  Score=51.84  Aligned_cols=80  Identities=15%  Similarity=0.212  Sum_probs=58.0

Q ss_pred             ccccchHHHHHHHccC-----ChhhhhhhhccChHHHhhhcCchhhccCCCCcchhhhcccccccc---cCCcHHHHHhh
Q 024966            4 TIALPAECISNIISLT-----TPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLI---TSLSKKDLYFH   75 (260)
Q Consensus         4 ~~~Lpe~ci~~ils~t-----~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~dy~~i~~~~~~p~~---~~~SkKely~~   75 (260)
                      +..||++.+-.|+...     +-++.-++|+||+.|+-+|..|.+|+.+|=.-|+.-+-...+-+.   -..|-+++|..
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~  186 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLE  186 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhh
Confidence            4689999998887654     459999999999999999999999999998777643322221110   13577888876


Q ss_pred             hccCCEEecC
Q 024966           76 LCRNPIIINN   85 (260)
Q Consensus        76 L~~~~vlld~   85 (260)
                      =.  -|.+||
T Consensus       187 Rp--RvrFdG  194 (366)
T KOG2997|consen  187 RP--RVRFDG  194 (366)
T ss_pred             Cc--ceeecc
Confidence            32  456655

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=89.41  E-value=0.21  Score=39.53  Aligned_cols=71  Identities=18%  Similarity=0.349  Sum_probs=56.5

Q ss_pred             ccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccCCCCcchhhhcccccccccCCcHHHHHhhhcc
Q 024966            4 TIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLITSLSKKDLYFHLCR   78 (260)
Q Consensus         4 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~dy~~i~~~~~~p~~~~~SkKely~~L~~   78 (260)
                      +-++|.+.|.-||...+|....++-.-|+-+.  -++|.+|.+|+=.||+.-..... |. +..|-+++|..+.+
T Consensus         4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l~--~~tdeLW~~~i~rdFp~~~~~~~-~~-~~~~Wr~~Y~~~~~   74 (109)
T PF06881_consen    4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHLI--EDTDELWKKLIKRDFPEESKRQK-PK-EPESWRELYEKLKK   74 (109)
T ss_pred             cCCCCHHHHHHHHccCCHHHHHHHHHhCCCcc--hhhHHHHHHHHHhHCcChhhccc-cc-ccchHHHHHHHHHH
Confidence            45799999999999999999999999997654  46999999999999975222211 22 35689999999864

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=85.06  E-value=0.33  Score=48.86  Aligned_cols=52  Identities=25%  Similarity=0.306  Sum_probs=46.7

Q ss_pred             ccccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccCCCCcch
Q 024966            2 DITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYK   53 (260)
Q Consensus         2 ~~~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~dy~   53 (260)
                      |.+..||-+..-.|+++++|++.|.+++||+.|+..++.+.+|.+.+.....
T Consensus       106 dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~  157 (537)
T KOG0274|consen  106 DFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIG  157 (537)
T ss_pred             chhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcc
Confidence            6678899999999999999999999999999999999999999876665443

>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]

Probab=84.96  E-value=0.28  Score=46.60  Aligned_cols=50  Identities=18%  Similarity=0.159  Sum_probs=45.1

Q ss_pred             ccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccCCCCcch
Q 024966            4 TIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYK   53 (260)
Q Consensus         4 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~dy~   53 (260)
                      +..||.+.+.++++++.++++.+.|+||+.+...++-+..|++++-.++.
T Consensus         8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l~   57 (386)
T KOG4408|consen    8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYLL   57 (386)
T ss_pred             hhhcccccceeeecccchhhhhcceeechHHhhhhhcccccccccccccc
Confidence            34788899999999999999999999999999999999999999955544

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=83.74  E-value=0.79  Score=44.19  Aligned_cols=37  Identities=16%  Similarity=0.225  Sum_probs=34.1

Q ss_pred             cccchHHHHHHHccC-ChhhhhhhhccChHHHhhhcCc
Q 024966            5 IALPAECISNIISLT-TPRDACRLSVVSPVFKSAADSD   41 (260)
Q Consensus         5 ~~Lpe~ci~~ils~t-~P~d~cr~a~vs~~fr~aa~sd   41 (260)
                      .+||+|.+..|..++ +..|..|+++||++.|+|+...
T Consensus         5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~   42 (373)
T PLN03215          5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV   42 (373)
T ss_pred             hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence            589999999999998 7999999999999999998863

>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus

Probab=82.32  E-value=20  Score=27.43  Aligned_cols=70  Identities=14%  Similarity=0.090  Sum_probs=42.8

Q ss_pred             eecCCCceeEEEEEEEEccCcCCCCccCeEEEEEEecCCcceeEEEEccCCcccccccccccCCeEEEEeeeEEecCCCC
Q 024966          150 RILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEGSDNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDD  229 (260)
Q Consensus       150 ~~LSp~t~Y~ay~v~kl~d~~~Gw~~~pv~~sv~~~~~g~~~~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~~~~~  229 (260)
                      ..|.||.+|.+.+-+|....      .++.+.+...+ +....  .....       .-.-.+.|.++++ +|... .+.
T Consensus        56 ~~l~~G~~Y~~s~~vk~~~~------~~~~~~~~~~~-~~~~~--~~~~~-------~~~~~~~W~~~s~-~ft~~-~~~  117 (131)
T PF02018_consen   56 ISLKPGKTYTVSFWVKADSG------GTVSVSLRDED-GSPYN--WYTGQ-------TVTITGEWTKYSG-TFTAP-SDD  117 (131)
T ss_dssp             EEE-TTSEEEEEEEEEESSS------EEEEEEEEESS-TTTEE--EEEEE-------EEEETSSEEEEEE-EEEEE-SSC
T ss_pred             eEecCCCEEEEEEEEEeCCC------CEEEEEEEEcC-CCCcE--EEEEE-------EEECCCCcEEEEE-EEEEC-CCC
Confidence            34679999999999999874      56666666655 31111  11100       0012379999995 89887 445


Q ss_pred             cEEEEEEE
Q 024966          230 GKLVCSLF  237 (260)
Q Consensus       230 ~ev~fs~~  237 (260)
                      ..+.|.+.
T Consensus       118 ~~~~l~~~  125 (131)
T PF02018_consen  118 DTVRLYFE  125 (131)
T ss_dssp             EEEEEEEE
T ss_pred             ceEEEEEE
Confidence            56766543

These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=80.50  E-value=0.81  Score=42.50  Aligned_cols=74  Identities=22%  Similarity=0.352  Sum_probs=53.7

Q ss_pred             ccccchHHHHHHHccCC-hhhhhhhhccChHHHhhhcCchhhccCCCCcchh--hhcccccccccCCcHHHHHhhhc
Q 024966            4 TIALPAECISNIISLTT-PRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQ--IISNSVSSLITSLSKKDLYFHLC   77 (260)
Q Consensus         4 ~~~Lpe~ci~~ils~t~-P~d~cr~a~vs~~fr~aa~sd~vW~~flP~dy~~--i~~~~~~p~~~~~SkKely~~L~   77 (260)
                      +.|||++|+..||-+++ -+|.--+|.|-.++....+.+-+|...+--.|.+  |-......-.--.--|++|++|-
T Consensus       202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~L~  278 (332)
T KOG3926|consen  202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQLR  278 (332)
T ss_pred             cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHHHH
Confidence            45999999999999765 8999999999999999999999999888765532  33222100000122568888875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	260
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 44/272 (16%), Positives = 78/272 (28%), Gaps = 101/272 (37%)

Query: 4   TIALPAECISNIISLTTPRDACRLS--VVSPVFKSAADSDSVWENFLPSDYKQ---IISN 58
             +L  + + +      PR+    +   +S + +S  D  + W+N+   +  +   II +
Sbjct: 303 VKSLLLKYL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 59  SVSSLITSLSKKDLYFHLCRNPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEP-- 116
           S++ L  +  +K   F                ++ P S      + T  LS+ W D    
Sbjct: 362 SLNVLEPAEYRK--MFD-------------RLSVFPPSAH----IPTILLSLIWFDVIKS 402

Query: 117 ------NHWILTSLPESRFPE------------------VAEL----------------- 135
                 N     SL E +  E                     L                 
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462

Query: 136 --------KYVWWF-----DVKAMIETRILSLRTNYTAYLVFKFVESK---YGFARRPVD 179
                   +Y +             E R+   R     +L F+F+E K      A     
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPE-RMTLFRM---VFLDFRFLEQKIRHDSTAWNASG 518

Query: 180 SGV-----------YIEGSDNGVRRRL--LLD 198
           S +           YI  +D    R +  +LD
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILD 550

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 40/264 (15%), Positives = 67/264 (25%), Gaps = 97/264 (36%)

Query: 18  LTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLITSLSKKDLYFHLC 77
           LTT R       +S    +    D       P + K ++             +DL   + 
Sbjct: 270 LTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-----YLDCRPQDLPREVL 323

Query: 78  R-NPIIINNGTMSFALQPESGKKCYMVGTKGLSIAWGDEPNHW--------------ILT 122
             NP  ++                 ++    +     D    W              I +
Sbjct: 324 TTNPRRLS-----------------IIAES-IR----DGLATWDNWKHVNCDKLTTIIES 361

Query: 123 SL-----PESR--------FPEVAELKYVWWFDVKAMIETRILS-LRTNYTAYLVFKFVE 168
           SL      E R        FP                I T +LS +  +     V   V 
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPP----------SAH--IPTILLSLIWFDVIKSDVMVVVN 409

Query: 169 S--KYGFA-RRPVDSGVYI---------EGSDNGVRRRLLLDPSRNMAR------LSQDR 210
              KY    ++P +S + I         +  +     R ++D   N+ +      L    
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPY 468

Query: 211 RDGWI---------EIEMGEFFNE 225
            D +           IE  E    
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTL 492

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 7  LPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYK 53
          LP +    I+S  +P D C+L   +  +        +W  FL  D  
Sbjct: 8  LPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	260
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.77
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.5
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.07
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.95
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.88
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.73
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	95.62
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	93.66
1dyo_A	160	Endo-1,4-beta-xylanase Y; carbohydrate-binding mod	89.24
4hfx_A	97	Transcription elongation factor B polypeptide 3; s	84.92

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.77  E-value=5.5e-09  Score=71.08  Aligned_cols=45  Identities=22%  Similarity=0.299  Sum_probs=40.0

Q ss_pred             cccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccC
Q 024966            3 ITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENF   47 (260)
Q Consensus         3 ~~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~f   47 (260)
                      .+.+||++++..|+++++|+|.+++++||+.|+.++.++.+|+++
T Consensus         8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            467899999999999999999999999999999999999999874

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.50  E-value=4.6e-08  Score=89.65  Aligned_cols=75  Identities=21%  Similarity=0.388  Sum_probs=61.0

Q ss_pred             ccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccCCCCcc---hhhhccccccc------------ccCCc
Q 024966            4 TIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDY---KQIISNSVSSL------------ITSLS   68 (260)
Q Consensus         4 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~dy---~~i~~~~~~p~------------~~~~S   68 (260)
                      +.+||.+++.+|+||++|+|+||+|+||+.+|.+|+.+.+|+.||-.|+   +++...+.+..            ..+..
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~~~   84 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAFFD   84 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----CCC
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCcccccccccccc
Confidence            5689999999999999999999999999999999999999999998774   44554433111            02456


Q ss_pred             HHHHHhhhcc
Q 024966           69 KKDLYFHLCR   78 (260)
Q Consensus        69 kKely~~L~~   78 (260)
                      ++.+|.+=|.
T Consensus        85 ~~~~y~~~~p   94 (312)
T 3l2o_B           85 YMAVYRMCCP   94 (312)
T ss_dssp             HHHHHHHHCT
T ss_pred             HHHHHHhcCh
Confidence            8999999884

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.07  E-value=1.3e-06  Score=79.90  Aligned_cols=49  Identities=18%  Similarity=0.337  Sum_probs=46.3

Q ss_pred             CccccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccCCC
Q 024966            1 MDITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLP   49 (260)
Q Consensus         1 ~~~~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP   49 (260)
                      +|.+..||++++..|++|++|.|.|++++||+.|+.+++++.+|++++-
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~   64 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK   64 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence            5889999999999999999999999999999999999999999998764

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.95  E-value=3.2e-06  Score=77.26  Aligned_cols=80  Identities=13%  Similarity=0.198  Sum_probs=59.9

Q ss_pred             cccccchHHHHHHHccCChhhhh-hhhccChHHHhhhcCchhhccCCCCcchhhhcccccccccCCcHHHHHhhhccCCE
Q 024966            3 ITIALPAECISNIISLTTPRDAC-RLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLITSLSKKDLYFHLCRNPI   81 (260)
Q Consensus         3 ~~~~Lpe~ci~~ils~t~P~d~c-r~a~vs~~fr~aa~sd~vW~~flP~dy~~i~~~~~~p~~~~~SkKely~~L~~~~v   81 (260)
                      .+..||++.+..||+++.|++.+ |+++||+.+|..++++.+|++.|.+..  +......+. +..+-|.+|..--..-+
T Consensus        50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g--~~~~~~~~~-~~~~Wk~~y~~~~~gRN  126 (297)
T 2e31_A           50 YLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEG--LVPEGSADE-ERDHWQQFYFLSKRRRN  126 (297)
T ss_dssp             CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTT--CCCC------CCSCHHHHHHHHHHCCC
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccC--cccccccCC-CCCChhhhheheecccc
Confidence            46789999999999999999999 999999999999999999999877651  111100011 24568999987433456


Q ss_pred             EecC
Q 024966           82 IINN   85 (260)
Q Consensus        82 lld~   85 (260)
                      ||.+
T Consensus       127 LL~N  130 (297)
T 2e31_A          127 LLRN  130 (297)
T ss_dssp             CSSC
T ss_pred             eeec
Confidence            6654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.88  E-value=3.5e-06  Score=77.06  Aligned_cols=48  Identities=23%  Similarity=0.302  Sum_probs=45.2

Q ss_pred             CccccccchHHHHHHHccCChhhhhhhhccChHHHhhhcC-chhhccCC
Q 024966            1 MDITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADS-DSVWENFL   48 (260)
Q Consensus         1 ~~~~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~s-d~vW~~fl   48 (260)
                      .|.+..||++++.+|+++++|+|.|++++||+.++.++++ +.+|++++
T Consensus        12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~   60 (464)
T 3v7d_B           12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL   60 (464)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred             cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4788999999999999999999999999999999999987 89998876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.84  E-value=2.7e-06  Score=77.90  Aligned_cols=51  Identities=22%  Similarity=0.427  Sum_probs=47.4

Q ss_pred             CccccccchH----HHHHHHccCChhhhhhhhccChHHHhhhcCchhhccCCCCc
Q 024966            1 MDITIALPAE----CISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSD   51 (260)
Q Consensus         1 ~~~~~~Lpe~----ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~d   51 (260)
                      .|++..||++    ++..|++|++|+|.|++++||+.||..++++.+|++++...
T Consensus         8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~   62 (435)
T 1p22_A            8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (435)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence            4889999999    99999999999999999999999999999999999887654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.73  E-value=0.00087  Score=59.14  Aligned_cols=44  Identities=23%  Similarity=0.319  Sum_probs=40.3

Q ss_pred             ccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccC
Q 024966            4 TIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENF   47 (260)
Q Consensus         4 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~f   47 (260)
                      +.+||++++..|+++++++|.++++.||+.|+.++.+...|..+
T Consensus         9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l   52 (336)
T 2ast_B            9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (336)
T ss_dssp             SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred             hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence            47899999999999999999999999999999999877788754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=95.62  E-value=0.0058  Score=57.92  Aligned_cols=36  Identities=19%  Similarity=0.427  Sum_probs=29.4

Q ss_pred             ccccccchHHHHHHHccCC-hhhhhhhhccChHHHhh
Q 024966            2 DITIALPAECISNIISLTT-PRDACRLSVVSPVFKSA   37 (260)
Q Consensus         2 ~~~~~Lpe~ci~~ils~t~-P~d~cr~a~vs~~fr~a   37 (260)
                      |++.+||++++.+|++|++ ++|++++|+||+.+|.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            8899999999999999999 99999999999999988

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=93.66  E-value=0.033  Score=52.78  Aligned_cols=33  Identities=18%  Similarity=0.307  Sum_probs=31.3

Q ss_pred             cccchHHHHHHHccC-ChhhhhhhhccChHHHhh
Q 024966            5 IALPAECISNIISLT-TPRDACRLSVVSPVFKSA   37 (260)
Q Consensus         5 ~~Lpe~ci~~ils~t-~P~d~cr~a~vs~~fr~a   37 (260)
                      .+||++++.+|++|+ +++|+++++.||+.|+.+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            379999999999999 899999999999999987

>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A

Probab=89.24  E-value=7.4  Score=31.24  Aligned_cols=94  Identities=11%  Similarity=0.074  Sum_probs=56.3

Q ss_pred             eecCCCceeEEEEEEEEccCcCCCCccCeEEEEEEecC-CcceeEEEEccCCcccccccccccCCeEEEEeeeEEecCCC
Q 024966          150 RILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEGS-DNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGD  228 (260)
Q Consensus       150 ~~LSp~t~Y~ay~v~kl~d~~~Gw~~~pv~~sv~~~~~-g~~~~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~~~~  228 (260)
                      ..|.||++|.+..-+|+.+..   +...+.+++...+. |..  +...+..       -....++|.+++-|.|......
T Consensus        63 ~~l~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g~~--~y~~i~~-------~~~~~~~W~~L~G~~ft~~~~~  130 (160)
T 1dyo_A           63 RTFVPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSGTQ--RYDTIDM-------KTVGPNQWVHLYNPQYRIPSDA  130 (160)
T ss_dssp             TTSCTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTSCE--EEEEEEE-------EEECSSCCEEEEEEEEECCTTC
T ss_pred             hhccCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCCCE--EEEEEee-------EEEcCCccEEEECcEEEeCCCC
Confidence            368899999999999997742   22234444444231 221  1222221       0123489999998899886542


Q ss_pred             CcEEEEEEEEEeCCcccccEEEEEEEEEecC
Q 024966          229 DGKLVCSLFEFDSFITKRGLIIQGIEVRPKS  259 (260)
Q Consensus       229 ~~ev~fs~~e~~~~~wK~GLiv~GieIRPk~  259 (260)
                       ..+.+-+ |.  ..-..=+.|+.|.|.|..
T Consensus       131 -~~~~lyv-e~--~~~~~d~yiDdv~i~~~g  157 (160)
T 1dyo_A          131 -TDMYVYV-ET--ADDTINFYIDEAIGAVAG  157 (160)
T ss_dssp             -EEEEEEE-EE--SSCCCCEEEEEEEEEETT
T ss_pred             -CEEEEEE-EC--CCCCccEEEEEEEEEeCc
Confidence             2343322 32  234555899999999864

>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}

Probab=84.92  E-value=0.24  Score=37.86  Aligned_cols=65  Identities=18%  Similarity=0.379  Sum_probs=40.0

Q ss_pred             ccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccCCCCcchhhhcccccccccCCcHHHHHhhhcc
Q 024966            6 ALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISNSVSSLITSLSKKDLYFHLCR   78 (260)
Q Consensus         6 ~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~dy~~i~~~~~~p~~~~~SkKely~~L~~   78 (260)
                      ..|-+.+.-||-..||....++=.-|+.+  +-++|-+|.+|+-.||..-.     |. +..|-+++|.+|.+
T Consensus        12 ~~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~-----p~-e~esWRelY~rl~~   76 (97)
T 4hfx_A           12 GVPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER-----PE-EYESWREMYLRLQD   76 (97)
T ss_dssp             --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC-----CC-SSSCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC-----CC-CCCCHHHHHHHHHH
Confidence            35788888899999999999999999965  56899999999999998432     21 35799999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	260
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	1e-04
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	5e-04
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	6e-04

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 1e-04
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 6  ALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVW 44
          +LP E +  I S     +  ++S V   +   A  +S+W
Sbjct: 3  SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 5e-04
 Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 5/83 (6%)

Query: 1  MDITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVW-----ENFLPSDYKQI 55
           D    LP E    ++S   P+D  + +     ++  A+ + +W     E  +       
Sbjct: 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIK 75

Query: 56 ISNSVSSLITSLSKKDLYFHLCR 78
              +         K  Y    R
Sbjct: 76 RRKVIKPGFIHSPWKSAYIRQHR 98

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (83), Expect = 6e-04
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 8/93 (8%)

Query: 1  MDITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSD-SVW------ENFLPSDYK 53
           D+  +LP E    I +     D      VS  +        S+W      ENF+     
Sbjct: 3  RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGF 62

Query: 54 QIISNSVSSLITSLSKKDLYFHLC-RNPIIINN 85
            ++  +S     LS++D        N  I+ N
Sbjct: 63 NSLNLKLSQKYPKLSQQDRLRLSFLENIFILKN 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	260
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.04
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.55
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.44
d1h6ya_	157	Xylan-binding domain {Clostridium thermocellum [Ta	94.0
d1guia_	155	Carbohydrate binding module from laminarinase 16A	86.15

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=7e-11  Score=88.63  Aligned_cols=76  Identities=14%  Similarity=0.196  Sum_probs=57.3

Q ss_pred             CccccccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccCCCCcchhhhcc-----cccccccCCcHHHHHhh
Q 024966            1 MDITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDYKQIISN-----SVSSLITSLSKKDLYFH   75 (260)
Q Consensus         1 ~~~~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~dy~~i~~~-----~~~p~~~~~SkKely~~   75 (260)
                      .|.+..||+|++..|+++++|+|+|++|+||+.|+.++.+|.+|++.+-.++......     ...+.....+-|++|.+
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~~~~~~~WK~~Y~~   95 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIR   95 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccCCCCCcCHHHHHHH
Confidence            3788999999999999999999999999999999999999999987775443211110     00011123457899987


Q ss_pred             h
Q 024966           76 L   76 (260)
Q Consensus        76 L   76 (260)
                      .
T Consensus        96 ~   96 (102)
T d2ovrb1          96 Q   96 (102)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=8.6e-10  Score=70.58  Aligned_cols=40  Identities=25%  Similarity=0.345  Sum_probs=38.8

Q ss_pred             cccchHHHHHHHccCChhhhhhhhccChHHHhhhcCchhh
Q 024966            5 IALPAECISNIISLTTPRDACRLSVVSPVFKSAADSDSVW   44 (260)
Q Consensus         5 ~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW   44 (260)
                      ..||++++..|+++++|+|.||+++||+.|+.+++++.+|
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            4799999999999999999999999999999999999999

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=8e-09  Score=77.34  Aligned_cols=47  Identities=21%  Similarity=0.280  Sum_probs=43.0

Q ss_pred             CccccccchHHHHHHHccCChhhhhhhhccChHHHhhhcC-chhhccC
Q 024966            1 MDITIALPAECISNIISLTTPRDACRLSVVSPVFKSAADS-DSVWENF   47 (260)
Q Consensus         1 ~~~~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~s-d~vW~~f   47 (260)
                      .|.+.+||+|.+..|+++++|.|.|++|+||+.|+..+++ ..+|++.
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l   50 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL   50 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            4899999999999999999999999999999999988765 5899875

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.4e-08  Score=77.98  Aligned_cols=52  Identities=21%  Similarity=0.412  Sum_probs=47.4

Q ss_pred             Cccccccch----HHHHHHHccCChhhhhhhhccChHHHhhhcCchhhccCCCCcc
Q 024966            1 MDITIALPA----ECISNIISLTTPRDACRLSVVSPVFKSAADSDSVWENFLPSDY   52 (260)
Q Consensus         1 ~~~~~~Lpe----~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~dy   52 (260)
                      .|++..||.    |.+..|+||++|.|.|++|+||+.|+..++++.+|.+++-+.+
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~~   63 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMV   63 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhc
Confidence            488999996    9999999999999999999999999999999999998875443

>d1h6ya_ b.18.1.7 (A:) Xylan-binding domain {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM22
domain: Xylan-binding domain
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.00  E-value=0.68  Score=33.97  Aligned_cols=99  Identities=10%  Similarity=0.102  Sum_probs=58.1

Q ss_pred             EeeeecCCCceeEEEEEEEEccCcCCCCccCeEEEEEEecCCcceeEEEEccCCcccccccccccCCeEEEEeeeEEecC
Q 024966          147 IETRILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEGSDNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNEN  226 (260)
Q Consensus       147 i~~~~LSp~t~Y~ay~v~kl~d~~~Gw~~~pv~~sv~~~~~g~~~~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~~  226 (260)
                      +....|.||++|.+.+-+|+.+..-+   ..+.+.+...+ +........+..       .....++|.++..++|....
T Consensus        57 ~~~~~l~~g~tY~~s~~vk~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~W~~~~~~~~~~~~  125 (157)
T d1h6ya_          57 LNPRTFVPGNTYCFSVVASFIEGASS---TTFCMKLQYVD-GSGTQRYDTIDM-------KTVGPNQWVHLYNPQYRIPS  125 (157)
T ss_dssp             CCTTTSCTTCEEEEEEEEECCSSSSC---EEEEEEEEEEC-TTSCEEEEEEEE-------EEECTTCCEEEEEEEEECCT
T ss_pred             ecceeccCCCEEEEEEEEEeCCCCcc---eeEEEEEEEec-CCCceeEEEeeE-------EEeccCccEEEEEEEEECCC
Confidence            34445889999999999998764322   22344444433 222222222211       11234789999888987755


Q ss_pred             CCCcEEEEEEEEEeCCcccccEEEEEEEEEecCC
Q 024966          227 GDDGKLVCSLFEFDSFITKRGLIIQGIEVRPKSG  260 (260)
Q Consensus       227 ~~~~ev~fs~~e~~~~~wK~GLiv~GieIRPk~~  260 (260)
                      +. ..+.|-+ +  +..-..-+.|+-+.+.|+.+
T Consensus       126 ~~-~~~~l~~-~--~~~~~~~~yiDDv~~~~~~~  155 (157)
T d1h6ya_         126 DA-TDMYVYV-A--TADDTINFYIDEAIGAVAGT  155 (157)
T ss_dssp             TC-EEEEEEE-E--ESSCCCCEEEEEEEEEETTC
T ss_pred             CC-cEEEEEE-E--CCCCCceEEEeeEEEecccc
Confidence            42 3455532 2  22223349999999999864

>d1guia_ b.18.1.14 (A:) Carbohydrate binding module from laminarinase 16A {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM4/9
domain: Carbohydrate binding module from laminarinase 16A
species: Thermotoga maritima [TaxId: 2336]

Probab=86.15  E-value=4.7  Score=29.28  Aligned_cols=88  Identities=14%  Similarity=0.142  Sum_probs=51.5

Q ss_pred             ecCCCceeEEEEEEEEccCcCCCCccCeEEEEEEecCCcceeEEEEccCCcccccccccccCCeEEEEeeeEEecCCCCc
Q 024966          151 ILSLRTNYTAYLVFKFVESKYGFARRPVDSGVYIEGSDNGVRRRLLLDPSRNMARLSQDRRDGWIEIEMGEFFNENGDDG  230 (260)
Q Consensus       151 ~LSp~t~Y~ay~v~kl~d~~~Gw~~~pv~~sv~~~~~g~~~~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~~~~~~  230 (260)
                      .|.||.+|.+.|..|-...      .++.+.+...+.+...-....+           .-..+|.++++ +|......+.
T Consensus        68 ~l~~g~~Y~lSf~~k~~~~------~~~~~~~~~~~~~~~~~~~~~~-----------~~t~~W~~~s~-~f~~~~~~~~  129 (155)
T d1guia_          68 GLYRGKTYTISFKAKADTP------RPINVKILQNHDPWTNYFAQTV-----------NLTADWQTFTF-TYTHPDDADE  129 (155)
T ss_dssp             ECCTTCEEEEEEEEEESSC------EEEEEEEECSSTTCCEEEEEEE-----------EECSSCEEEEE-EEECCTTSCS
T ss_pred             EecCCCEEEEEEEEEeCCC------CcEEEEEEEcCCCCeEEeeeEE-----------eeccccEEEEE-EEEecCCCCc
Confidence            4789999999998886431      2333433332211111111111           12368999885 7877654445


Q ss_pred             EEEEEEEEEeCCcccccEEEEEEEEEec
Q 024966          231 KLVCSLFEFDSFITKRGLIIQGIEVRPK  258 (260)
Q Consensus       231 ev~fs~~e~~~~~wK~GLiv~GieIRPk  258 (260)
                      .+.+.+. . ++.-.+.+.|+-|.|-||
T Consensus       130 ~~~l~~~-~-~~~~~~~~~iDnV~l~~~  155 (155)
T d1guia_         130 VVQISFE-L-GEGTATTIYFDDVTVSPQ  155 (155)
T ss_dssp             EEEEEEE-C-CSSCCCEEEEEEEEEEEC
T ss_pred             cEEEEEE-E-CCCCCcEEEEEEEEEEEC
Confidence            5555443 2 333356799999999997