Citrus Sinensis ID: 024967

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
MFVVKPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTIDICLVHHSHAIYDLLVNCSVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQASQHQ
cccccccccccccEEEEccccccccEEEEEEEEccccccccEEEccEEEEEEEEEEEEccHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHHHccc
cccccccccccccccHHHHccEEEEEEEEEEEEEEEEccccEEEEEEEEEEEEEcHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHHHccc
mfvvkprlRTMYLSMLLHLFNTVPWHIRQMMLSINSatqglkfrpmSLMVKYIYLFKTIDICLVHHSHAIYDLLVNCSVIrasipklnlddaFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSvlgfsinvpgttakdVMDMVLVTQYFDTMKEIGaaskssavfiphgpgavrDVATQIRDGLLQASQHQ
mfvvkprlRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTIDICLVHHSHAIYDLLVNCSVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSinvpgttakdvMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQASQHQ
MFVVKPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTIDICLVHHSHAIYDLLVNCSVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQASQHQ
**VVKPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTIDICLVHHSHAIYDLLVNCSVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVA**********L***********KYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQ************
*FVVKPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTIDICLVHHSHAIYDLLVNCSVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLS**GI**QRQAIVDGLRDSV**************VMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQI****L******
MFVVKPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTIDICLVHHSHAIYDLLVNCSVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQASQHQ
*FVVKPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTIDICLVHHSHAIYDLLVNCSVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQA****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFVVKPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTIDICLVHHSHAIYDLLVNCSVIRASIPKLNxxxxxxxxxxxxxxxxxxxxxxxxxYGYEIVQTLIVDIEPDEHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQASQHQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query260 2.2.26 [Sep-21-2011]
Q9FM19286 Hypersensitive-induced re yes no 0.688 0.625 0.938 3e-94
Q9SRH6285 Hypersensitive-induced re no no 0.688 0.628 0.854 1e-87
Q9CAR7286 Hypersensitive-induced re no no 0.688 0.625 0.843 2e-79
Q9FHM7292 Hypersensitive-induced re no no 0.688 0.613 0.608 4e-62
P16148184 Protein PPLZ12 OS=Lupinus N/A no 0.661 0.934 0.627 1e-61
P0AA56305 Protein QmcA OS=Shigella yes no 0.761 0.649 0.221 9e-05
P0AA53305 Protein QmcA OS=Escherich N/A no 0.761 0.649 0.221 9e-05
P0AA54305 Protein QmcA OS=Escherich yes no 0.761 0.649 0.221 9e-05
P0AA55305 Protein QmcA OS=Escherich N/A no 0.761 0.649 0.221 9e-05
O26788318 Uncharacterized protein M yes no 0.419 0.342 0.311 0.0003
>sp|Q9FM19|HIR1_ARATH Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1 Back     alignment and function desciption
 Score =  344 bits (883), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 168/179 (93%), Positives = 176/179 (98%)

Query: 79  VIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNE 138
           VIRAS+PKL LDD FEQKN+IAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNE
Sbjct: 104 VIRASVPKLLLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNE 163

Query: 139 INAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSI 198
           INAAAR+R+AANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGF++
Sbjct: 164 INAAARMRLAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAV 223

Query: 199 NVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQAS 257
           NVPGTTAKDVMDMVLVTQYFDTMKEIGA+SKSSAVFIPHGPGAVRDVA+QIRDGLLQ S
Sbjct: 224 NVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVASQIRDGLLQGS 282

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SRH6|HIR3_ARATH Hypersensitive-induced response protein 3 OS=Arabidopsis thaliana GN=HIR3 PE=1 SV=1 Back     alignment and function description
>sp|Q9CAR7|HIR2_ARATH Hypersensitive-induced response protein 2 OS=Arabidopsis thaliana GN=HIR2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FHM7|HIR4_ARATH Hypersensitive-induced response protein 4 OS=Arabidopsis thaliana GN=HIR4 PE=1 SV=1 Back     alignment and function description
>sp|P16148|PLZ12_LUPPO Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1 Back     alignment and function description
>sp|P0AA56|QMCA_SHIFL Protein QmcA OS=Shigella flexneri GN=qmcA PE=3 SV=1 Back     alignment and function description
>sp|P0AA53|QMCA_ECOLI Protein QmcA OS=Escherichia coli (strain K12) GN=qmcA PE=1 SV=1 Back     alignment and function description
>sp|P0AA54|QMCA_ECOL6 Protein QmcA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=qmcA PE=3 SV=1 Back     alignment and function description
>sp|P0AA55|QMCA_ECO57 Protein QmcA OS=Escherichia coli O157:H7 GN=qmcA PE=3 SV=1 Back     alignment and function description
>sp|O26788|Y692_METTH Uncharacterized protein MTH_692 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_692 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
151347473285 hypersensitive-induced response protein 0.7 0.638 0.972 2e-97
225456672291 PREDICTED: hypersensitive-induced respon 0.7 0.625 0.950 2e-95
297734025343 unnamed protein product [Vitis vinifera] 0.7 0.530 0.950 2e-95
225456674286 PREDICTED: hypersensitive-induced respon 0.7 0.636 0.950 2e-95
358249224284 uncharacterized protein LOC100804982 [Gl 0.696 0.637 0.956 6e-94
449440758286 PREDICTED: hypersensitive-induced respon 0.688 0.625 0.938 2e-93
46452120285 hypersensitive-induced reaction protein 0.688 0.628 0.955 2e-93
297793865287 band 7 family protein [Arabidopsis lyrat 0.684 0.620 0.943 1e-92
357153791357 PREDICTED: hypersensitive-induced respon 0.7 0.509 0.913 1e-92
374256021239 putative hypersensitive-induced response 0.7 0.761 0.912 1e-92
>gi|151347473|gb|ABS01349.1| hypersensitive-induced response protein [Carica papaya] Back     alignment and taxonomy information
 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 177/182 (97%), Positives = 180/182 (98%)

Query: 79  VIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNE 138
           VIRAS+PKLNLDD FEQKNEIAKAVE+ELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNE
Sbjct: 104 VIRASVPKLNLDDVFEQKNEIAKAVEDELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNE 163

Query: 139 INAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSI 198
           INAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFS+
Sbjct: 164 INAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSV 223

Query: 199 NVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQASQ 258
           NVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQAS 
Sbjct: 224 NVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQASS 283

Query: 259 HQ 260
           HQ
Sbjct: 284 HQ 285

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225456672|ref|XP_002272267.1| PREDICTED: hypersensitive-induced response protein 1 isoform 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734025|emb|CBI15272.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225456674|ref|XP_002272188.1| PREDICTED: hypersensitive-induced response protein 1 isoform 1 [Vitis vinifera] gi|225456676|ref|XP_002272225.1| PREDICTED: hypersensitive-induced response protein 1 isoform 2 [Vitis vinifera] gi|359491740|ref|XP_003634316.1| PREDICTED: hypersensitive-induced response protein 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|358249224|ref|NP_001240269.1| uncharacterized protein LOC100804982 [Glycine max] gi|255646614|gb|ACU23781.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449440758|ref|XP_004138151.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 1 [Cucumis sativus] gi|449440760|ref|XP_004138152.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 2 [Cucumis sativus] gi|449477307|ref|XP_004154987.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 1 [Cucumis sativus] gi|449477311|ref|XP_004154988.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|46452120|gb|AAS98165.1| hypersensitive-induced reaction protein [Capsicum annuum] Back     alignment and taxonomy information
>gi|297793865|ref|XP_002864817.1| band 7 family protein [Arabidopsis lyrata subsp. lyrata] gi|297310652|gb|EFH41076.1| band 7 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357153791|ref|XP_003576567.1| PREDICTED: hypersensitive-induced response protein 1-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|374256021|gb|AEZ00872.1| putative hypersensitive-induced response protein, partial [Elaeis guineensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
TAIR|locus:2170698286 HIR1 "HYPERSENSITIVE-INDUCED R 0.688 0.625 0.938 1.9e-83
TAIR|locus:2100242285 HIR2 "hypersensitive induced r 0.688 0.628 0.854 2.7e-77
TAIR|locus:2196749286 AT1G69840 [Arabidopsis thalian 0.688 0.625 0.843 2.7e-75
TAIR|locus:2153117292 AT5G51570 [Arabidopsis thalian 0.688 0.613 0.608 4.6e-57
UNIPROTKB|Q4K427306 PFL_5948 "HflC/HflK family pro 0.615 0.522 0.285 4.5e-07
UNIPROTKB|Q81JF5321 BAS1928 "SPFH domain/Band 7 fa 0.453 0.367 0.288 8.7e-07
TIGR_CMR|BA_2075321 BA_2075 "SPFH domain/Band 7 fa 0.453 0.367 0.288 8.7e-07
UNIPROTKB|P0AA53305 qmcA "predicted protease, memb 0.692 0.590 0.237 1.3e-06
UNIPROTKB|Q8CX37311 SO_4128 "Putative negative reg 0.584 0.488 0.295 1.8e-06
TIGR_CMR|SO_4128311 SO_4128 "SPFH domain/Band 7 fa 0.584 0.488 0.295 1.8e-06
TAIR|locus:2170698 HIR1 "HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 168/179 (93%), Positives = 176/179 (98%)

Query:    79 VIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNE 138
             VIRAS+PKL LDD FEQKN+IAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNE
Sbjct:   104 VIRASVPKLLLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNE 163

Query:   139 INAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSI 198
             INAAAR+R+AANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGF++
Sbjct:   164 INAAARMRLAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAV 223

Query:   199 NVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQAS 257
             NVPGTTAKDVMDMVLVTQYFDTMKEIGA+SKSSAVFIPHGPGAVRDVA+QIRDGLLQ S
Sbjct:   224 NVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVASQIRDGLLQGS 282
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0016020 "membrane" evidence=IEA;IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0043424 "protein histidine kinase binding" evidence=IPI
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2100242 HIR2 "hypersensitive induced reaction 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196749 AT1G69840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153117 AT5G51570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K427 PFL_5948 "HflC/HflK family protein" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
UNIPROTKB|Q81JF5 BAS1928 "SPFH domain/Band 7 family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2075 BA_2075 "SPFH domain/Band 7 family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P0AA53 qmcA "predicted protease, membrane anchored" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q8CX37 SO_4128 "Putative negative regulator of univalent cation permeability" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4128 SO_4128 "SPFH domain/Band 7 family protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FM19HIR1_ARATHNo assigned EC number0.93850.68840.6258yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
cd03407262 cd03407, Band_7_4, A subgroup of the band 7 domain 1e-89
cd03403215 cd03403, Band_7_stomatin_like, Band_7_stomatin_lik 1e-13
COG0330291 COG0330, HflC, Membrane protease subunits, stomati 2e-13
pfam01145177 pfam01145, Band_7, SPFH domain / Band 7 family 1e-12
cd02106121 cd02106, Band_7, The band 7 domain of flotillin (r 3e-11
cd03404266 cd03404, Band_7_HflK, Band_7_HflK: The band 7 doma 3e-09
smart00244160 smart00244, PHB, prohibitin homologues 8e-09
cd03408207 cd03408, Band_7_5, A subgroup of the band 7 domain 2e-04
TIGR01933261 TIGR01933, hflK, HflK protein 0.002
cd03405242 cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma 0.003
>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information 
 Score =  265 bits (680), Expect = 1e-89
 Identities = 114/173 (65%), Positives = 133/173 (76%), Gaps = 1/173 (0%)

Query: 78  SVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMN 137
            V+RA IPKL LD+ FEQK+EIAKAVEEEL +AMS YG+EIV TLI DI+PD  VKRAMN
Sbjct: 91  DVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMN 150

Query: 138 EINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFS 197
           EINAA R RVAA  KAEAEKI  IK AE +AE+K L G+G A QRQAI DGLR+S+L  +
Sbjct: 151 EINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLA 210

Query: 198 INVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIR 250
             VPG TAKDVMD++LV QYFDT+K  G +S +  VF PHGPG  +D+  QIR
Sbjct: 211 DAVPGMTAKDVMDLLLVNQYFDTLKAYGRSSSTV-VFRPHGPGGAQDIYAQIR 262

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 262
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family Back     alignment and domain information
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|214581 smart00244, PHB, prohibitin homologues Back     alignment and domain information
>gnl|CDD|239502 cd03408, Band_7_5, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|130988 TIGR01933, hflK, HflK protein Back     alignment and domain information
>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 260
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 100.0
KOG2620301 consensus Prohibitins and stomatins of the PID sup 100.0
PRK11029334 FtsH protease regulator HflC; Provisional 100.0
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 100.0
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 100.0
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 100.0
PRK10930419 FtsH protease regulator HflK; Provisional 100.0
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 100.0
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 100.0
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 99.97
KOG2621288 consensus Prohibitins and stomatins of the PID sup 99.96
cd03406280 Band_7_3 A subgroup of the band 7 domain of flotil 99.94
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 99.94
cd03402219 Band_7_2 A subgroup of the band 7 domain of flotil 99.91
KOG3090290 consensus Prohibitin-like protein [Posttranslation 99.8
PF01145179 Band_7: SPFH domain / Band 7 family; InterPro: IPR 99.78
smart00244160 PHB prohibitin homologues. prohibitin homologues 99.77
KOG3083271 consensus Prohibitin [Posttranslational modificati 99.72
KOG2668 428 consensus Flotillins [Intracellular trafficking, s 99.63
cd03399128 Band_7_flotillin Band_7_flotillin: a subgroup of t 99.53
cd03400124 Band_7_1 A subgroup of the band 7 domain of flotil 99.46
COG2268 548 Uncharacterized protein conserved in bacteria [Fun 99.45
KOG2962322 consensus Prohibitin-related membrane protease sub 99.33
cd03408207 Band_7_5 A subgroup of the band 7 domain of flotil 99.27
cd02106121 Band_7 The band 7 domain of flotillin (reggie) lik 99.07
KOG2620301 consensus Prohibitins and stomatins of the PID sup 98.18
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 98.05
PF13421211 Band_7_1: SPFH domain-Band 7 family 97.52
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 97.4
PTZ00491850 major vault protein; Provisional 97.15
PRK10930419 FtsH protease regulator HflK; Provisional 97.12
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 96.93
COG4260345 Membrane protease subunit, stomatin/prohibitin fam 96.84
PRK11029334 FtsH protease regulator HflC; Provisional 96.8
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 96.73
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 96.46
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 95.51
COG2268548 Uncharacterized protein conserved in bacteria [Fun 94.63
PRK13665316 hypothetical protein; Provisional 90.99
PF12127316 YdfA_immunity: SigmaW regulon antibacterial; Inter 89.91
PRK01558198 V-type ATP synthase subunit E; Provisional 88.98
PRK01558198 V-type ATP synthase subunit E; Provisional 88.43
TIGR01147113 V_ATP_synt_G vacuolar ATP synthase, subunit G. Thi 88.24
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 86.88
PRK02292188 V-type ATP synthase subunit E; Provisional 86.23
COG2811108 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E 85.82
KOG2668428 consensus Flotillins [Intracellular trafficking, s 85.68
COG1580159 FliL Flagellar basal body-associated protein [Cell 84.68
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 84.18
PLN03086 567 PRLI-interacting factor K; Provisional 83.39
cd03406280 Band_7_3 A subgroup of the band 7 domain of flotil 82.62
PRK01005207 V-type ATP synthase subunit E; Provisional 80.46
PRK01005207 V-type ATP synthase subunit E; Provisional 80.15
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information 
Probab=100.00  E-value=5e-45  Score=321.17  Aligned_cols=243  Identities=51%  Similarity=0.684  Sum_probs=222.8

Q ss_pred             eecccccceeeceecccceeecceeEEEEEEeeccceecccCCceeeEeeeEEEEEee-eEEeecc-----hhhhHHH--
Q 024967            3 VVKPRLRTMYLSMLLHLFNTVPWHIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-ICLVHHS-----HAIYDLL--   74 (260)
Q Consensus         3 ~v~~r~~~~~~~~~~PGl~~~~~~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~~~~-----~a~y~v~--   74 (260)
                      .|..||| +|+++++|||||++||++++...++++.+.++++. .+.|+|++. +.+| .+.|.+.     +++|++.  
T Consensus         5 ~Vv~rfG-k~~~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~-~~lTkD~~~-V~vd~~v~yrI~d~~~~~~~~~~~~~   81 (262)
T cd03407           5 AIIERFG-KFFKVAWPGCHFVIPLVETVAGRLSLRVQQLDVRV-ETKTKDNVF-VTVVGQIQYRVSEENATDAFYKLGNP   81 (262)
T ss_pred             EEEeecC-cccccCCCCeEEEeccccceeeEEeeeEEEecCCC-ceEcCCCCE-EEEEEEEEEEECCcHHHHHHHHcCCH
Confidence            4778999 79999999999999999998766999999999987 479999998 8888 4544433     5688765  


Q ss_pred             ------HhHHHHHHHcccCcHhHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHHHHHHHHHH
Q 024967           75 ------VNCSVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVA  148 (260)
Q Consensus        75 ------~~~~alR~vi~~~~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae~~~~a  148 (260)
                            .+.+++|+++|++++++++++|++|+..+.+.+++.+++|||.|.+|.|+++.||++++++|++++.|+|++++
T Consensus        82 ~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~~a  161 (262)
T cd03407          82 EEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVA  161 (262)
T ss_pred             HHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence                  67899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHhhHHhHHHHhhhCCCCchhhhhHHHHHHHHHHHHHHHhccC
Q 024967          149 ANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGAAS  228 (260)
Q Consensus       149 ~~~~Ae~~~~a~i~~Aegeae~~~~~Aea~a~a~~~~aea~a~a~~~~~~a~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  228 (260)
                      .+.+||+++.+.+.+|+|++++.+++|+|+|++.++.|+|+++++..++++++..+.+++.++++..+|+|+|+++++++
T Consensus       162 ~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~~~  241 (262)
T cd03407         162 AVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGRSS  241 (262)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999886667788889999999999999999655


Q ss_pred             CCcEEEEcCCCCchhhHHHHH
Q 024967          229 KSSAVFIPHGPGAVRDVATQI  249 (260)
Q Consensus       229 ~~~~v~lp~~~~~~~~~~~~~  249 (260)
                      + +++++|.+++++.+++.++
T Consensus       242 ~-kviv~p~~~~~~~~~~~~~  261 (262)
T cd03407         242 S-TVVFRPHGPGGAQDIYAQI  261 (262)
T ss_pred             C-CEEEecCCCccHHHHHHhc
Confidence            5 8899999999999988765

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance Back     alignment and domain information
>smart00244 PHB prohibitin homologues Back     alignment and domain information
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only] Back     alignment and domain information
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PF13421 Band_7_1: SPFH domain-Band 7 family Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PTZ00491 major vault protein; Provisional Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK13665 hypothetical protein; Provisional Back     alignment and domain information
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365 Back     alignment and domain information
>PRK01558 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PRK01558 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>PRK02292 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion] Back     alignment and domain information
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion] Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>PLN03086 PRLI-interacting factor K; Provisional Back     alignment and domain information
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PRK01005 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PRK01005 V-type ATP synthase subunit E; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 1e-04
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 42.9 bits (100), Expect = 8e-05
 Identities = 42/240 (17%), Positives = 83/240 (34%), Gaps = 54/240 (22%)

Query: 60  DICLVHHSHAIYDLLVNCSVI----RASIPKLNLDDAFEQKNEI---------------- 99
           DI  V     + +   +C  +    ++ + K  +D     K+ +                
Sbjct: 20  DILSVFEDAFVDNF--DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77

Query: 100 --AKAVEEELEK----AMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKA 153
              K VEE L       MS    E  Q  ++     E   R  N+    A+  V     +
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-----S 132

Query: 154 EAEKILQIKRAEGEAES-KYLS--G-LGIARQRQAIVDGLRD----SVLGFSI---NVPG 202
             +  L++++A  E    K +   G LG  +   A+ D          + F I   N+  
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL-DVCLSYKVQCKMDFKIFWLNL-K 190

Query: 203 --TTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQASQHQ 260
              + + V++M L    +       + S  S+  I     +++    ++R  LL++  ++
Sbjct: 191 NCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSN-IKLRIHSIQA---ELRR-LLKSKPYE 244
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143 Back     alignment and structure
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 99.93
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 99.88
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 99.8
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 99.62
2zuo_A861 MVP, major vault protein; repeat domains, protein- 97.39
3v6i_B105 V-type ATP synthase, subunit (VAPC-therm); periphe 89.98
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Back     alignment and structure
Probab=99.93  E-value=9.2e-26  Score=188.12  Aligned_cols=134  Identities=18%  Similarity=0.262  Sum_probs=115.7

Q ss_pred             eeEEEEEEeeccceecccCCceeeEeeeEEEEEee-eEEe---ecchhhhHHH--------HhHHHHHHHcccCcHhHHH
Q 024967           26 HIRQMMLSINSATQGLKFRPMSLMVKYIYLFKTID-ICLV---HHSHAIYDLL--------VNCSVIRASIPKLNLDDAF   93 (260)
Q Consensus        26 ~i~~~~~~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~---~~~~a~y~v~--------~~~~alR~vi~~~~l~ei~   93 (260)
                      |++++.+ +|+|.++++++++.+.|+|++. +.+| .+.|   +|.+++|.+.        ++.+++|+++|++++++++
T Consensus         2 fi~~v~~-vd~r~~~~~v~~~~v~TkD~~~-V~v~~~v~yrI~dp~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell   79 (188)
T 3bk6_A            2 IFEKAVI-VDLRTQVLDVPVQETITKDNVP-VRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELL   79 (188)
T ss_dssp             CEEECCC-CCSSCEEEEEEEEEEECTTSCE-EEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             ceEEEEE-EeeeEEEEecCCceeEcCCCCE-EEEEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHH
Confidence            5788865 9999999999999999999998 7788 4444   4445666553        5779999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024967           94 EQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQI  161 (260)
Q Consensus        94 ~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~Ae~~~~a~~~~Ae~~~~a~i  161 (260)
                      ++|++|+..+++.+++.+.+|||.|.+|.|++|.||+++.++|+.++.|||+++|.+.+|||++++..
T Consensus        80 ~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~a~~  147 (188)
T 3bk6_A           80 SERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAE  147 (188)
T ss_dssp             HCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888887776666666655543
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Back     alignment and structure
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 260
d1wina_143 d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T 6e-08
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (115), Expect = 6e-08
 Identities = 11/67 (16%), Positives = 28/67 (41%)

Query: 78  SVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMN 137
             +R+ +  L ++  ++ +++ AK V E     +   G EI+   I D+        ++ 
Sbjct: 74  GHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLG 133

Query: 138 EINAAAR 144
           +   +  
Sbjct: 134 KTQTSGP 140

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
d1wina_143 Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} 99.62
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.1e-16  Score=125.49  Aligned_cols=109  Identities=15%  Similarity=0.184  Sum_probs=93.6

Q ss_pred             EeeccceecccCCceeeEeeeEEEEEee-eEEee---cchhh---------hHHH--------HhHHHHHHHcccCcHhH
Q 024967           33 SINSATQGLKFRPMSLMVKYIYLFKTID-ICLVH---HSHAI---------YDLL--------VNCSVIRASIPKLNLDD   91 (260)
Q Consensus        33 ~vd~r~~~~~~~~~~v~tkd~v~~~~vD-~~~~~---~~~a~---------y~v~--------~~~~alR~vi~~~~l~e   91 (260)
                      ++|++.++++++++.+.|+|+++ +.+| .+.+.   +.+++         +.+.        .+++++|+++|++++++
T Consensus         9 rislr~~~l~~~~q~v~TkD~v~-v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~l~e   87 (143)
T d1wina_           9 RISLEIMTLQPRCEDVETAEGVA-LTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQ   87 (143)
T ss_dssp             SCCCSCEEECCCEEEEECSSSCE-EEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             EeeeeEEeecCCCceEECCCCCE-EEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            48999999999999999999999 7788 44333   33221         1222        57789999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeccCcHHHHHHHHHHHHH
Q 024967           92 AFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAA  142 (260)
Q Consensus        92 i~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~A  142 (260)
                      ++++|++|...+++.+++.+++||++|.++.|+||++|.++.++|+++..|
T Consensus        88 l~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A  138 (143)
T d1wina_          88 IYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTS  138 (143)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCC
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999876554