Citrus Sinensis ID: 024968

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
MSDQKTVLEEVFGGSSDSDTEDDEQQQHLEEDLFPSDEDGSQSNVSQKSSWQRFEEIGGLCLCRDFLSPEEQSYLLSAIQNEGWFTDTSHNQVMRFGDLPMWATKLSDSIREEVLLSDDLPINDGDKDVCILPSDLLWREPLFDQLIVNVYQPGEGICPHVDLMRFEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMRKLCHVE
ccHHHHHHHHHHccccccccccHHHHHccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHcccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccEEEEcccccEEEEEEEccccccccccccccccccEEEEEEccccEEEEEcccccccccccccccccccccccEEccccEEEEEEccccccc
cHHHHHHHHHHHccccccccccccccHHccHHcccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHcccccHHHcccEEEEcccccccccccccccccHcccccccccccccHHHHcccHHcccccccccEEEEEEccccccccccccccccccEEEEEEccccEEEEEccccccccccccccccccccEEEEEEcccEEEEEEcccHEEEEccccccccccccccEEEEcccEEEEEEEEEEccc
MSDQKTVLEEvfggssdsdteddEQQQhleedlfpsdedgsqsnvsqksSWQRFEEIGGlclcrdflspEEQSYLLSAIQNegwftdtshnqvmrfgdlpmwATKLSDSIreevllsddlpindgdkdvcilpsdllwreplfdQLIVNvyqpgegicphvdlmrFEDGIAIVSLESSCVMHFTQVkeasatgegridnphavkipvyltpgslviMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMRKLCHVE
msdqktvleevfggssdsdteDDEQQQHLEEDlfpsdedgsqSNVSQKSSWQRFEEIGGLCLCRDFLSPEEQSYLLSAIQNEGWFTDTSHNQVMRFGDLPMWATKLSDSIREEVLlsddlpindgdKDVCILPSDLLWREPLFDQLIVNVYQPGEGICPHVDLMRFEDGIAIVSLESSCVMHFTQVKEAsatgegridnphavkipvyltpGSLVIMSREARYLWKHEInrkqgfqmwegevlnqkkrtsitmrklchve
MSDQKTVLEEVFGGssdsdteddeqqqhleedLFPSDEDGSQSNVSQKSSWQRFEEIGGLCLCRDFLSPEEQSYLLSAIQNEGWFTDTSHNQVMRFGDLPMWATKLSDSIREEVLLSDDLPINDGDKDVCILPSDLLWREPLFDQLIVNVYQPGEGICPHVDLMRFEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMRKLCHVE
**************************************************WQRFEEIGGLCLCRDFLSPEEQSYLLSAIQNEGWFTDTSHNQVMRFGDLPMWATKLSDSIREEVLLSDDLPINDGDKDVCILPSDLLWREPLFDQLIVNVYQPGEGICPHVDLMRFEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLN****************
*****************************************************FEEIGGLCLCRDFLSPEEQSYLLSAIQNEGWFTDTSHNQVMRFGDLPMWATKLSDSIREEVLLSDDLPINDGDKDVCILPSDLLWREPLFDQLIVNVYQPGEGICPHVDLMRFEDGIAIVSLESSCVMHFT**************NPHAVKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMRKLCHV*
***************************HLEEDLFP*****************RFEEIGGLCLCRDFLSPEEQSYLLSAIQNEGWFTDTSHNQVMRFGDLPMWATKLSDSIREEVLLSDDLPINDGDKDVCILPSDLLWREPLFDQLIVNVYQPGEGICPHVDLMRFEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMRKLCHVE
****************************************SQSNVSQKSSWQRFEEIGGLCLCRDFLSPEEQSYLLSAIQNEGWFTDTSHNQVMRFGDLPMWATKLSDSIREEVLLSDDLPINDGDKDVCILPSDLLWREPLFDQLIVNVYQPGEGICPHVDLMRFEDGIAIVSLESSCVMHFTQVK************PHAVKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMRKLCH**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSDQKTVLEEVFGGSSDSDTEDDEQQQHLEEDLFPSDEDGSQSNVSQKSSWQRFEEIGGLCLCRDFLSPEEQSYLLSAIQNEGWFTDTSHNQVMRFGDLPMWATKLSDSIREEVLLSDDLPINDGDKDVCILPSDLLWREPLFDQLIVNVYQPGEGICPHVDLMRFEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMRKLCHVE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query260 2.2.26 [Sep-21-2011]
Q07G10 628 Alkylated DNA repair prot yes no 0.684 0.283 0.301 9e-16
Q5UR03210 Uncharacterized protein L N/A no 0.696 0.861 0.271 3e-14
Q9UT12225 Uncharacterized protein P yes no 0.434 0.502 0.371 5e-13
A1A4L5 664 Alkylated DNA repair prot yes no 0.711 0.278 0.279 2e-11
Q80Y20 664 Alkylated DNA repair prot yes no 0.588 0.230 0.285 3e-10
Q95K79 664 Alkylated DNA repair prot N/A no 0.476 0.186 0.329 1e-09
Q96BT7 664 Alkylated DNA repair prot yes no 0.365 0.143 0.347 1e-09
Q8K2U2235 Alpha-ketoglutarate-depen no no 0.684 0.757 0.246 0.0002
>sp|Q07G10|ALKB8_XENTR Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis GN=alkbh8 PE=2 SV=2 Back     alignment and function desciption
 Score = 84.0 bits (206), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 104/222 (46%), Gaps = 44/222 (19%)

Query: 59  GLCLCRDFLSPEEQSYLLSAIQNEGWFTDTSHNQVMRFGDLPMWATKLSDSIREEVLLSD 118
           GL +  DF+SPE++  +L +I    W ++TS  + ++   +  +  +      +   +  
Sbjct: 137 GLIIVEDFVSPEQERTMLESID---WDSETSSQKSLKHRQVKHYGYEFR---YDNNNVDK 190

Query: 119 DLPINDGDKDVCI------LPSDLLWREPLFDQLIVNVYQPGEGICPHVDLMR-FEDGIA 171
           D P+  G  D C       +   L+  +P  DQL +N Y+PG+GI PHVD    FED I 
Sbjct: 191 DKPLPGGLPDFCTEALRKCVQRGLIKHDP--DQLTINQYEPGQGIPPHVDTHSAFEDEIL 248

Query: 172 IVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMSREARYLWKHEINR 231
            +SL +  VM F               +P+   +PV L   SL+IMS E+RYLW H I  
Sbjct: 249 SLSLGAEIVMDF--------------KHPNGSVVPVMLPQRSLLIMSGESRYLWTHGITP 294

Query: 232 KQG--FQMWEGEVL-------------NQKKRTSITMRKLCH 258
           ++    Q+ EG+ +              +  RTS T RK+ H
Sbjct: 295 RKFDVIQVSEGQTVGTISGNSGELTLSKRSTRTSFTFRKVRH 336
Catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA. Catalyzes the last step in the formation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA. Has a preference for tRNA(Arg) and tRNA(Glu), and does not bind tRNA(Lys). Required for normal survival after DNA damage.
Xenopus tropicalis (taxid: 8364)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2EC: 9
>sp|Q5UR03|YL905_MIMIV Uncharacterized protein L905 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L905 PE=4 SV=1 Back     alignment and function description
>sp|Q9UT12|YLW2_SCHPO Uncharacterized protein P8A3.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP8A3.02c PE=3 SV=1 Back     alignment and function description
>sp|A1A4L5|ALKB8_BOVIN Alkylated DNA repair protein alkB homolog 8 OS=Bos taurus GN=ALKBH8 PE=2 SV=1 Back     alignment and function description
>sp|Q80Y20|ALKB8_MOUSE Alkylated DNA repair protein alkB homolog 8 OS=Mus musculus GN=Alkbh8 PE=2 SV=1 Back     alignment and function description
>sp|Q95K79|ALKB8_MACFA Alkylated DNA repair protein alkB homolog 8 OS=Macaca fascicularis GN=ALKBH8 PE=2 SV=1 Back     alignment and function description
>sp|Q96BT7|ALKB8_HUMAN Alkylated DNA repair protein alkB homolog 8 OS=Homo sapiens GN=ALKBH8 PE=1 SV=2 Back     alignment and function description
>sp|Q8K2U2|ALKB6_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Mus musculus GN=Alkbh6 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
225437314260 PREDICTED: alkylated DNA repair protein 0.953 0.953 0.630 4e-88
255582176258 hypothetical protein RCOM_1439870 [Ricin 0.953 0.961 0.621 2e-80
224128510267 predicted protein [Populus trichocarpa] 0.953 0.928 0.596 3e-79
449469096260 PREDICTED: alkylated DNA repair protein 0.953 0.953 0.567 8e-77
297814057223 hypothetical protein ARALYDRAFT_490317 [ 0.85 0.991 0.544 3e-66
115486503259 Os11g0657200 [Oryza sativa Japonica Grou 0.915 0.918 0.528 3e-66
357155893261 PREDICTED: uncharacterized protein LOC10 0.903 0.900 0.531 3e-66
18411957226 oxidoreductase, 2OG-Fe(II) oxygenase fam 0.861 0.991 0.544 9e-66
242071881262 hypothetical protein SORBIDRAFT_05g02594 0.788 0.782 0.579 2e-65
21537393226 unknown [Arabidopsis thaliana] 0.861 0.991 0.544 3e-65
>gi|225437314|ref|XP_002263866.1| PREDICTED: alkylated DNA repair protein alkB homolog 8 [Vitis vinifera] gi|297743861|emb|CBI36831.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  330 bits (846), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 167/265 (63%), Positives = 197/265 (74%), Gaps = 17/265 (6%)

Query: 4   QKTVLEEVFGGSSDSDTEDDEQQQHLEEDLFPSDEDGSQSNVSQKSSWQRFEEIGGLCLC 63
           QKT+LE VFG SSDS+  D   Q  LE+    S+++          SW+   EI GL LC
Sbjct: 5   QKTLLEAVFGESSDSEDSDHHPQNRLEDSSIHSEKN---------PSWEPISEINGLWLC 55

Query: 64  RDFLSPEEQSYLLSAIQNEGWFTDTSHNQVMRFGDLPMWATKLSDSIREEVLLSD----- 118
           RDFLSP+EQS LLSAI+ EGWF++ SHNQ MRFG+LP WAT+LS SIRE VL SD     
Sbjct: 56  RDFLSPQEQSSLLSAIEKEGWFSEASHNQAMRFGNLPEWATELSHSIREVVLFSDYVSEH 115

Query: 119 -DLPINDGDKDVCILPSDLLWREPLFDQLIVNVYQPGEGICPHVDLMRFEDGIAIVSLES 177
            D    DGD+  C+LPS++LWREPLFDQLI+NVYQPGEGICPHVDLMRFEDGIAI+SLES
Sbjct: 116 MDSVTCDGDEKGCLLPSEILWREPLFDQLILNVYQPGEGICPHVDLMRFEDGIAIISLES 175

Query: 178 SCVMHFTQVKEASATGEGRIDNPHA--VKIPVYLTPGSLVIMSREARYLWKHEINRKQGF 235
           SC+MHFT V +  A   GR    ++   KIPVYLTPGSLV+MS EARY WKHEINRK GF
Sbjct: 176 SCIMHFTHVDDTEACDSGREGRNYSPMTKIPVYLTPGSLVLMSGEARYFWKHEINRKPGF 235

Query: 236 QMWEGEVLNQKKRTSITMRKLCHVE 260
           Q+WEG+ ++QK RTSIT+RKLC +E
Sbjct: 236 QIWEGQEIDQKSRTSITLRKLCKIE 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255582176|ref|XP_002531882.1| hypothetical protein RCOM_1439870 [Ricinus communis] gi|223528490|gb|EEF30519.1| hypothetical protein RCOM_1439870 [Ricinus communis] Back     alignment and taxonomy information
>gi|224128510|ref|XP_002320350.1| predicted protein [Populus trichocarpa] gi|222861123|gb|EEE98665.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449469096|ref|XP_004152257.1| PREDICTED: alkylated DNA repair protein alkB homolog 8-like [Cucumis sativus] gi|449484295|ref|XP_004156842.1| PREDICTED: alkylated DNA repair protein alkB homolog 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297814057|ref|XP_002874912.1| hypothetical protein ARALYDRAFT_490317 [Arabidopsis lyrata subsp. lyrata] gi|297320749|gb|EFH51171.1| hypothetical protein ARALYDRAFT_490317 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|115486503|ref|NP_001068395.1| Os11g0657200 [Oryza sativa Japonica Group] gi|77552371|gb|ABA95168.1| oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed [Oryza sativa Japonica Group] gi|113645617|dbj|BAF28758.1| Os11g0657200 [Oryza sativa Japonica Group] gi|125535173|gb|EAY81721.1| hypothetical protein OsI_36895 [Oryza sativa Indica Group] gi|125577943|gb|EAZ19165.1| hypothetical protein OsJ_34702 [Oryza sativa Japonica Group] gi|215765543|dbj|BAG87240.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357155893|ref|XP_003577273.1| PREDICTED: uncharacterized protein LOC100835151 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|18411957|ref|NP_567239.1| oxidoreductase, 2OG-Fe(II) oxygenase family pro [Arabidopsis thaliana] gi|105830019|gb|ABF74711.1| At4g02485 [Arabidopsis thaliana] gi|332656779|gb|AEE82179.1| oxidoreductase, 2OG-Fe(II) oxygenase family pro [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242071881|ref|XP_002451217.1| hypothetical protein SORBIDRAFT_05g025940 [Sorghum bicolor] gi|241937060|gb|EES10205.1| hypothetical protein SORBIDRAFT_05g025940 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|21537393|gb|AAM61734.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
TAIR|locus:505006428226 AT4G02485 [Arabidopsis thalian 0.773 0.889 0.598 3.8e-62
TAIR|locus:2028631431 TRM9 "tRNA methyltransferase 9 0.753 0.454 0.299 1.8e-15
POMBASE|SPAP8A3.02c225 ofd2 "2 OG-Fe(II) oxygenase su 0.430 0.497 0.381 1.3e-13
FB|FBgn0034748 615 CG17807 [Drosophila melanogast 0.719 0.304 0.339 4.2e-13
MGI|MGI:1914917 664 Alkbh8 "alkB, alkylation repai 0.746 0.292 0.298 4.5e-11
DICTYBASE|DDB_G0293582247 DDB_G0293582 "2-oxoglutarate ( 0.65 0.684 0.271 1.8e-10
UNIPROTKB|Q95K79 664 ALKBH8 "Alkylated DNA repair p 0.746 0.292 0.285 5.7e-10
UNIPROTKB|Q96BT7 664 ALKBH8 "Alkylated DNA repair p 0.646 0.253 0.292 1.1e-09
UNIPROTKB|E2REE7 674 ALKBH8 "Uncharacterized protei 0.646 0.249 0.301 1.1e-09
UNIPROTKB|I3LA93 665 ALKBH8 "Uncharacterized protei 0.726 0.284 0.303 2e-09
TAIR|locus:505006428 AT4G02485 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 134/224 (59%), Positives = 160/224 (71%)

Query:    36 SDEDGSQS-NVSQKSSWQRFEEIGGLCLCRDFLSPEEQSYLLSAIQNEGWFTDTSHNQVM 94
             +D  G ++  +   + W+R EEI GL L R+FLS   QS+LLSAI NEGWF + S NQ M
Sbjct:    22 ADRPGKETIGIGDSAVWERVEEINGLWLYRNFLSIAHQSHLLSAILNEGWFVEESINQAM 81

Query:    95 RFGDLPMWATKLSDSIREEVLLSDDLPINDGDKDVCILPSDLLWREPLFDQLIVNVYQPG 154
             RFGDLP WAT+LSD IRE  L S DLP+         L +DLLWREPLFDQLIVN+YQPG
Sbjct:    82 RFGDLPSWATELSDLIRE-TLESVDLPV---------LSADLLWREPLFDQLIVNLYQPG 131

Query:   155 EGICPHVDLMRFEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSL 214
             EGIC HVDL+RFEDGIAIVSLES CVM F+  ++          N +   + V L PGSL
Sbjct:   132 EGICAHVDLLRFEDGIAIVSLESPCVMRFSPAEK----------NEYEA-VDVLLNPGSL 180

Query:   215 VIMSREARYLWKHEINRKQ-GFQMWEGEVLNQKKRTSITMRKLC 257
             ++MS EARY WKHEINRKQ GFQ+WEGE ++QK+R SIT+RKLC
Sbjct:   181 ILMSGEARYRWKHEINRKQNGFQLWEGEEIDQKRRISITLRKLC 224
GO:0005634 "nucleus" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2028631 TRM9 "tRNA methyltransferase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAP8A3.02c ofd2 "2 OG-Fe(II) oxygenase superfamily protein Ofd2" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
FB|FBgn0034748 CG17807 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1914917 Alkbh8 "alkB, alkylation repair homolog 8 (E. coli)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0293582 DDB_G0293582 "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q95K79 ALKBH8 "Alkylated DNA repair protein alkB homolog 8" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|Q96BT7 ALKBH8 "Alkylated DNA repair protein alkB homolog 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2REE7 ALKBH8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3LA93 ALKBH8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
pfam13532190 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su 1e-10
COG3145194 COG3145, AlkB, Alkylated DNA repair protein [DNA r 1e-10
>gnl|CDD|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information 
 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 45/218 (20%), Positives = 68/218 (31%), Gaps = 50/218 (22%)

Query: 59  GLCLCRDFLSPEEQSYLLSAIQNEG-WFTD-TSHNQVMRFGDLPM-------WATKLSDS 109
           GL L   FLS EEQ+ LL  +  E  W    T   + M    + M       W T     
Sbjct: 1   GLVLLPGFLSAEEQAALLRELLAEAPWRQPMTPGGKPMS---VRMTNCGPLGWVTDGPGY 57

Query: 110 IREEVLLSDDLPINDGDKDVCILPSDL--LWREPL---------FDQLIVNVYQPGEGIC 158
                 +    P           P+ L  L               +  +VN Y+PG  + 
Sbjct: 58  RYSGTPV-TGEPWPP-------FPAVLLQLAERLAAAAGPPGFEPNACLVNFYRPGARMG 109

Query: 159 PHVDL--MRFEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVI 216
            H D   + F   I  VSL    +  F                     I + L  G +++
Sbjct: 110 LHQDKDELDFGAPIVSVSLGDPALFRF------------GGKTRDDPTIALPLESGDVLV 157

Query: 217 MSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMR 254
           M   +R  + H + R +        +     R ++T R
Sbjct: 158 MGGPSRLAY-HGVPRIK--PGTHPLLGGG--RINLTFR 190

Length = 190
>gnl|CDD|225687 COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 260
KOG3200224 consensus Uncharacterized conserved protein [Funct 100.0
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 99.98
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 99.97
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 99.92
KOG3959306 consensus 2-Oxoglutarate- and iron-dependent dioxy 99.9
COG3145194 AlkB Alkylated DNA repair protein [DNA replication 99.88
KOG4176323 consensus Uncharacterized conserved protein [Funct 99.85
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 98.4
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.21
KOG2731378 consensus DNA alkylation damage repair protein [RN 98.05
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 97.98
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.97
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 96.61
PF12933253 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 96.45
PLN00052310 prolyl 4-hydroxylase; Provisional 95.08
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 94.45
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 90.09
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 82.42
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 81.01
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-33  Score=236.66  Aligned_cols=182  Identities=26%  Similarity=0.429  Sum_probs=150.1

Q ss_pred             eccCCceEEecCCCCHHHHHHHHHHHHh---CCCCCCCCCCcccccC-----------CCChhHHHHHHHHHHHhhhCCC
Q 024968           54 FEEIGGLCLCRDFLSPEEQSYLLSAIQN---EGWFTDTSHNQVMRFG-----------DLPMWATKLSDSIREEVLLSDD  119 (260)
Q Consensus        54 ~~~ipGL~~ip~fls~~Ee~~Ll~~i~~---~~W~~~~~~r~~~~~G-----------~lP~~~~~l~~~~~~~~~~gd~  119 (260)
                      +..-|-..|||||||++||+.+++.|..   ..|.... +||.+.||           .+|.|++.+.+++.....|+. 
T Consensus         8 V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~-NRRLqNyGGvvh~~glipeelP~wLq~~v~kinnlglF~s-   85 (224)
T KOG3200|consen    8 VKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLA-NRRLQNYGGVVHKTGLIPEELPPWLQYYVDKINNLGLFKS-   85 (224)
T ss_pred             ecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHH-hhhhhhcCCccccCCcCccccCHHHHHHHHHhhcccccCC-
Confidence            4445678999999999999999999998   4687765 66788888           389999999888876655431 


Q ss_pred             CCCCCCCCCccCCCccccccCCCCCeEEEeeeCCCCCCCCCCCCCCCCCcEEEEecCCceeEEEeecccccccCCCC-cC
Q 024968          120 LPINDGDKDVCILPSDLLWREPLFDQLIVNVYQPGEGICPHVDLMRFEDGIAIVSLESSCVMHFTQVKEASATGEGR-ID  198 (260)
Q Consensus       120 ~~~~~~~~~~~~lp~~ll~~~~~~n~~lvN~Y~pG~gI~~H~D~~~~~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~-~~  198 (260)
                                            ..||+|||+|.||+||+||.|++.|.++|++|||||.|+|+|......+.++... ..
T Consensus        86 ----------------------~~NHVLVNeY~pgqGImPHtDGPaf~piVstiSlGsh~vldf~~p~r~e~~d~te~~d  143 (224)
T KOG3200|consen   86 ----------------------PANHVLVNEYLPGQGIMPHTDGPAFHPIVSTISLGSHTVLDFYDPVRQEVNDGTESKD  143 (224)
T ss_pred             ----------------------CcceeEeecccCCCCcCcCCCCCcccceEEEEecCCceEEecccccccccCCccccCC
Confidence                                  4699999999999999999999999999999999999999999866554443321 22


Q ss_pred             CCCCceEEEEcCCCcEEEeccccccceeecccccCC-------------ccccccceecCCceEEEEccccccC
Q 024968          199 NPHAVKIPVYLTPGSLVIMSREARYLWKHEINRKQG-------------FQMWEGEVLNQKKRTSITMRKLCHV  259 (260)
Q Consensus       199 ~~~~~~~~v~L~~gSLlvm~G~aR~~w~H~I~~~~~-------------~~~~~g~~~~~~~RiSLTfR~v~~~  259 (260)
                      ......+.+.|+++||+|+.++|+.++.|||.....             .+...|..+.+++|||||+|.|.+|
T Consensus       144 qp~R~~fsllleprslLilkd~aYtd~LHgIs~s~~d~l~~~~sna~ac~s~k~Gd~lvr~tRvSLTiR~VPkv  217 (224)
T KOG3200|consen  144 QPLRYLFSLLLEPRSLLILKDDAYTDFLHGISDSPTDCLNQVVSNALACSSRKDGDKLVRQTRVSLTIRLVPKV  217 (224)
T ss_pred             CCccceeeeeeccceEEEEcCcHHHHHHhhcccChHHHHHHHhhhhhhccccCCcceeeecceeEEEEecchHH
Confidence            356778899999999999999999999999986542             1234677788899999999999765

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only] Back     alignment and domain information
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG4176 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family Back     alignment and domain information
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
3tht_A345 Crystal Structure And Rna Binding Properties Of The 9e-11
3thp_A345 Crystal Structure And Rna Binding Properties Of The 6e-09
>pdb|3THT|A Chain A, Crystal Structure And Rna Binding Properties Of The RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna Hypermodification, Northeast Structural Genomics Consortium Target Hr5601b Length = 345 Back     alignment and structure 
Iteration: 1

 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 23/119 (19%)
Query: 119 DLPINDGDKDVCI------LPSDLLWREPLFDQLIVNVYQPGEGICPHVDLMR-FEDGIA 171
           D P++ G  D+C       L    +  +P  DQ+ +N Y+PG+GI  H+D    FED I 
Sbjct: 169 DKPLSGGLPDICESFLEKWLRKGYIKHKP--DQMTINQYEPGQGIPAHIDTHSAFEDEIV 226
Query: 172 IVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMSREARYLWKHEIN 230
            +SL S  VM F               +P  + +PV L   SL++M+ E+RYLW H I 
Sbjct: 227 SLSLGSEIVMDF--------------KHPDGIAVPVMLPRRSLLVMTGESRYLWTHGIT 271
>pdb|3THP|A Chain A, Crystal Structure And Rna Binding Properties Of The RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna Hypermodification, Northeast Structural Genomics Consortium Target Hr5601b Length = 345 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 7e-35
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 4e-18
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 1e-13
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 8e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345 Back     alignment and structure
 Score =  127 bits (319), Expect = 7e-35
 Identities = 51/230 (22%), Positives = 87/230 (37%), Gaps = 33/230 (14%)

Query: 47  QKSSWQRFEEIGGLCLCRDFLSPEEQSYLLSAIQNEGWFTDTSHNQVMRFGDLPMWATKL 106
           Q    +      GL +  + +S EE+  LL ++       + +  + ++   +  +  + 
Sbjct: 100 QWKELRPQALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEF 159

Query: 107 SDSIREEVLLSDDLPINDGD--KDVCILPSDLLWREPLFDQLIVNVYQPGEGICPHVDLM 164
                  V     L     D  +          + +   DQ+ +N Y+PG+GI  H+D  
Sbjct: 160 -HYENNNVDKDKPLSGGLPDICESFLEKWLRKGYIKHKPDQMTINQYEPGQGIPAHIDTH 218

Query: 165 R-FEDGIAIVSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMSREARY 223
             FED I  +SL S  VM F                P  + +PV L   SL++M+ E+RY
Sbjct: 219 SAFEDEIVSLSLGSEIVMDFKH--------------PDGIAVPVMLPRRSLLVMTGESRY 264

Query: 224 LWKHEI---------------NRKQGFQMWEGEVLNQKKRTSITMRKLCH 258
           LW H I               +      + +  +  +  RTS T RK+  
Sbjct: 265 LWTHGITCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQ 314
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Length = 204 Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Length = 238 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 100.0
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 100.0
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 100.0
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 99.97
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 97.69
3lfm_A 495 Protein FTO; FAT MASS and obesity associated (FTO) 97.66
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 97.46
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 97.08
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 96.22
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 94.48
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 93.78
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 92.61
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
Probab=100.00  E-value=7.6e-35  Score=252.60  Aligned_cols=182  Identities=21%  Similarity=0.325  Sum_probs=142.7

Q ss_pred             ceeeeccCCc-eEEecCCCCHHHHHHHHHHHHh-CCCCCCCCCCcccccCC---CChhHHHHHHHHHHHhhhCCC---CC
Q 024968           50 SWQRFEEIGG-LCLCRDFLSPEEQSYLLSAIQN-EGWFTDTSHNQVMRFGD---LPMWATKLSDSIREEVLLSDD---LP  121 (260)
Q Consensus        50 ~~~~~~~ipG-L~~ip~fls~~Ee~~Ll~~i~~-~~W~~~~~~r~~~~~G~---lP~~~~~l~~~~~~~~~~gd~---~~  121 (260)
                      +|+.+ .-+| -+++++||+++|++.|++.|.+ .+|+... ..+...||+   .|          |..+|||+.   |.
T Consensus         2 ~~~~~-~~~~~~~~~~~~l~~~~a~~l~~~l~~~~~w~~~~-~~~~~~~gk~~~~p----------R~~~wyg~~~~~Y~   69 (204)
T 3s57_A            2 SWRHI-RAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGA-LARVQVFGKWHSVP----------RKQATYGDAGLTYT   69 (204)
T ss_dssp             CCEEE-EETTEEEEEEECSCHHHHHHHHHHHHHHCCCCCGG-GGEEEETTEEEECS----------SEEEEEECTTCCEE
T ss_pred             Cccee-eeCCceEEecCcCCHHHHHHHHHHHHHhCCCCCcc-cceEEECCeEeccC----------cEEEEECCCCCCcc
Confidence            46766 3467 5679999999999999999966 7896432 224567886   45          335788863   77


Q ss_pred             CCCCCCCccCCCccccc--------cCCCCCeEEEeeeCCCC-CCCCCCCCC-C--CCCcEEEEecCCceeEEEeecccc
Q 024968          122 INDGDKDVCILPSDLLW--------REPLFDQLIVNVYQPGE-GICPHVDLM-R--FEDGIAIVSLESSCVMHFTQVKEA  189 (260)
Q Consensus       122 ~~~~~~~~~~lp~~ll~--------~~~~~n~~lvN~Y~pG~-gI~~H~D~~-~--~~~~Ia~lSLGs~~vm~f~~~~~~  189 (260)
                      |++......+||+.|..        .+..||+||||+|++|+ +|+||.|+. .  ++++||+||||++|+|.|+++...
T Consensus        70 Ysg~~~~~~pwp~~L~~l~~~~~~~~g~~~n~~LvN~Y~~G~d~i~~H~D~~~~~~~~~~IasvSLG~~~~f~~~~~~~~  149 (204)
T 3s57_A           70 FSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSR  149 (204)
T ss_dssp             ETTEEECCEECCHHHHHHHHHHHHHHCCCCSEEEEEEESSTTCCEEEECCCCTTBCTTCCEEEEEEESCEEEEEEEGGGC
T ss_pred             cCCCcccCCCCCHHHHHHHHHHHHHhCCCCceeEEEEECCCCCcccceecChhhccCCCcEEEEECCCceEEEEEEcCCC
Confidence            77766666778875531        25689999999999999 999999995 3  689999999999999999987542


Q ss_pred             cccCCCCcCCCCCceEEEEcCCCcEEEeccccccceeecccccCCccccccceecCCceEEEEccccc
Q 024968          190 SATGEGRIDNPHAVKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMRKLC  257 (260)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~L~~gSLlvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTfR~v~  257 (260)
                      ..+     .......++|.|++||||||+|++|+.|+|+|++.+.         .++.|||||||++.
T Consensus       150 ~~~-----~~~~~~~~~~~L~~GsllvM~g~~q~~w~H~Ip~~~~---------~~~~RislTFR~i~  203 (204)
T 3s57_A          150 GKS-----PSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKK---------VLAPRVNLTFRKIL  203 (204)
T ss_dssp             SSS-----CSCCCCCEEEEECTTEEEEEETTHHHHEEEEECCCTT---------CCSCEEEEEEECBC
T ss_pred             ccc-----cccCCceEEEECCCCCEEEECchhhheeEeeccccCC---------CCCCEEEEEeeeec
Confidence            110     0123467899999999999999999999999999863         46899999999985
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 260
d2iuwa1210 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s 4e-20
d2fdia1200 b.82.2.10 (A:15-214) Alkylated DNA repair protein 4e-14
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (205), Expect = 4e-20
 Identities = 24/203 (11%), Positives = 63/203 (31%), Gaps = 17/203 (8%)

Query: 57  IGGLCLCRDFLSPEEQSYLLSAIQNEGWFTDTSHNQVMRFGDLPMWATKLSD-SIREEVL 115
           +  +CL   F+  +E  ++L  +  +  +   +  +       P       +       +
Sbjct: 18  VSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELPYTYSRI 77

Query: 116 LSDDLPINDGDKDVCILPSDLLWREPLFDQLIVNVYQPGEGICPHVD---LMRFEDGIAI 172
             +  P             +          L        + +  H D    +     IA 
Sbjct: 78  TMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIAS 137

Query: 173 VSLESSCVMHFTQVKEASATGEGRIDNPHAVKIPVYLTPGSLVIMSREARYLWKHEINRK 232
           +S  ++      +       G+      +  ++ + L  G+L+IM    +  W+H + ++
Sbjct: 138 LSFGATRTFEMRKKPPPEENGDYT----YVERVKIPLDHGTLLIMEGATQADWQHRVPKE 193

Query: 233 QGFQMWEGEVLNQKKRTSITMRK 255
                      +++ R ++T R 
Sbjct: 194 YH---------SREPRVNLTFRT 207
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 100.0
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 99.97
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 94.33
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 94.15
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-33  Score=241.65  Aligned_cols=177  Identities=18%  Similarity=0.269  Sum_probs=123.5

Q ss_pred             ccCCceEEecCCCCHHHHHHHHHHHHh-CCCCCCCCCCcccccCC---CChhHHHHHHHHHHHhhhCCC-CCCCCCC-CC
Q 024968           55 EEIGGLCLCRDFLSPEEQSYLLSAIQN-EGWFTDTSHNQVMRFGD---LPMWATKLSDSIREEVLLSDD-LPINDGD-KD  128 (260)
Q Consensus        55 ~~ipGL~~ip~fls~~Ee~~Ll~~i~~-~~W~~~~~~r~~~~~G~---lP~~~~~l~~~~~~~~~~gd~-~~~~~~~-~~  128 (260)
                      .+++||.|+|||||++|++.|++.|.+ ..|....    ...+|+   .|.          ...++++. |.|+... ..
T Consensus        16 ~g~~~l~y~p~fLs~~e~~~Ll~~L~~e~~w~~~~----~~~~g~~~~~pR----------~~~~~~d~~y~y~~~~~~~   81 (210)
T d2iuwa1          16 TGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRT----GIREDITYQQPR----------LTAWYGELPYTYSRITMEP   81 (210)
T ss_dssp             SSCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCE----EESSSCEEECSS----------EEEEEECCCTTSCHHHHCC
T ss_pred             CCcceEEEECCcCCHHHHHHHHHHHHhhCCccccc----eeccCcccceee----------eeEEecCcCcccccccccc
Confidence            367789999999999999999999987 4776542    222221   221          12233322 3333221 11


Q ss_pred             ccCCCcccc--------ccCCCCCeEEEeeeCCC-CCCCCCCCCC-CC--CCcEEEEecCCceeEEEeecccccccCCCC
Q 024968          129 VCILPSDLL--------WREPLFDQLIVNVYQPG-EGICPHVDLM-RF--EDGIAIVSLESSCVMHFTQVKEASATGEGR  196 (260)
Q Consensus       129 ~~~lp~~ll--------~~~~~~n~~lvN~Y~pG-~gI~~H~D~~-~~--~~~Ia~lSLGs~~vm~f~~~~~~~~~~~~~  196 (260)
                      ..+||+.|.        .....+|+|++|.|.+| ++|+||+|+. .+  ++.||+||||++|+|.|+++.......   
T Consensus        82 ~~~~~~~l~~l~~~~~~~~~~~~~~~~ln~Y~~~~~~I~~H~D~~~~~~~~~~I~slSlG~~~~~~~r~~~~~~~~~---  158 (210)
T d2iuwa1          82 NPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENG---  158 (210)
T ss_dssp             BSSCCHHHHHHHHHHHHHHSCCCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC--------
T ss_pred             CCCCcHHHHHHHHhhhhhcCccchhhhhhccccCCCccccCcCCchhcccCCceeEEeeCCceEEEEccccccccCC---
Confidence            233444221        01346788988888765 6999999996 45  568999999999999998865432111   


Q ss_pred             cCCCCCceEEEEcCCCcEEEeccccccceeecccccCCccccccceecCCceEEEEcccccc
Q 024968          197 IDNPHAVKIPVYLTPGSLVIMSREARYLWKHEINRKQGFQMWEGEVLNQKKRTSITMRKLCH  258 (260)
Q Consensus       197 ~~~~~~~~~~v~L~~gSLlvm~G~aR~~w~H~I~~~~~~~~~~g~~~~~~~RiSLTfR~v~~  258 (260)
                       .......++|.|++||||||+|++|+.|+|+||+++.         .+++|||||||+|.|
T Consensus       159 -~~~~~~~~~i~L~~gsl~vm~g~~~~~~~H~Ip~~~~---------~~~~RiSlTfR~v~p  210 (210)
T d2iuwa1         159 -DYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYH---------SREPRVNLTFRTVYP  210 (210)
T ss_dssp             ----CCCEEEEEECTTCEEEEEETHHHHEEEEECCCSS---------CCCCEEEEEEECCCC
T ss_pred             -ccCCCceEEEEcCCCCEEEeCchhhCceEccCCccCC---------CCCCeEEEEEEeecC
Confidence             1123568999999999999999999999999998763         468999999999986
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure