Citrus Sinensis ID: 024970

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Protein Sequence
MADPNGHSWRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMPISSLFYLFLVFII
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHEEHHcHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHEEEccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccHHHccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEccEEEEEEcccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcc
Coil and Loop (DISEMBL)
madpnghswrdgmssdNIKGLILALSSSIFIGSSFIVKKKglkkagasgvragfggysylyepLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSttivlhapaerEIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSgmnqliypqtwAFTLIVIVCVLTQMNYLNMVMPISSLFYLFLVFII
Flexible Loop (DISEMBL)
madpnghswrdgMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMPISSLFYLFLVFII
Low Complexity Region (SEG)
MADPNGHSWRDGMSSDNIKglilalsssifigssfiVkkkglkkagaSGVRAGFGGYSYLYEPLWWVGMITMVVGEIanfaayafapaILVTPlgalsiiisaalahiilRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMPISSLFYLFLVFII
Disordered region (IsUnstruct)
*****************IKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMPISSLFYLFLVFI*
Disordered Region (DISOPRED)
****************NIKGLILALSSSIFIGSSFIVKKKGL************G*YSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHA**********EVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMPISSLFYLFLVFII
Disordered Region (DISEMBL)
**********DGMSSDNIKGLILALSSSIFIGSSFIVKK********SGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMPISSLFYLFLVFII
Disordered Region (DISPRO)
************MSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVR*GFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMPISSLFYLFLVFII
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADPNGHSWRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMPISSLFYLFLVFII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	260	2.2.26 [Sep-21-2011]
Q3SWX0	360	Magnesium transporter NIP	yes	no	0.915	0.661	0.506	1e-62
Q5R7Q3	360	Magnesium transporter NIP	yes	no	0.915	0.661	0.506	1e-62
Q8N8Q9	360	Magnesium transporter NIP	yes	no	0.915	0.661	0.506	1e-62
Q9JJC8	359	Magnesium transporter NIP	yes	no	0.915	0.662	0.489	2e-61
Q0D2K0	466	Magnesium transporter NIP	no	no	0.969	0.540	0.437	8e-54
Q8BZF2	406	Magnesium transporter NIP	no	no	0.919	0.588	0.436	1e-52
Q8BMW7	416	Magnesium transporter NIP	no	no	0.919	0.574	0.484	4e-49
Q5RDB8	410	Magnesium transporter NIP	no	no	0.926	0.587	0.483	6e-42
Q6NVV3	410	Magnesium transporter NIP	no	no	0.926	0.587	0.475	5e-41
Q7RTP0	329	Magnesium transporter NIP	no	no	0.707	0.559	0.429	1e-36

>sp|Q3SWX0|NIPA2_BOVIN Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2 PE=2 SV=1

 Score =  239 bits (611), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/245 (50%), Positives = 174/245 (71%), Gaps = 7/245 (2%)

Query: 20  GLILALSSSIFIGSSFIVKKKGLKKAGASG-VRAGFGGYSYLYEPLWWVGMITMVVGEIA 78
           GL LA+SSSIFIG SFI+KKKGL +    G  RAG GG++YL E LWW G+++M  GE+A
Sbjct: 13  GLGLAMSSSIFIGGSFILKKKGLLRLARKGSTRAGQGGHAYLKEWLWWAGLLSMGAGEVA 72

Query: 79  NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138
           NFAAYAFAPA LVTPLGALS+++SA L+   L ERL++ G +GC+L ++GST +V+HAP 
Sbjct: 73  NFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPK 132

Query: 139 EREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLS 198
           E EIE++ E+ +   +P F+++A LV+    ILIF   P++GQT+I+VYI +CS++G++S
Sbjct: 133 EEEIETLNEMSHKLGDPGFVVFATLVVIVSLILIFVVGPRHGQTNILVYITICSVIGAVS 192

Query: 199 VMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMPI------SSLF 252
           V   K +GIA+K   +G   L +P TW   L +IVCV TQ+NYLN  + I      + ++
Sbjct: 193 VSCAKGLGIAIKELFAGKPVLQHPLTWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIY 252

Query: 253 YLFLV 257
           Y+F  
Sbjct: 253 YVFFT 257

Acts as a selective Mg(2+) transporter.
Bos taurus (taxid: 9913)

>sp|Q5R7Q3|NIPA2_PONAB Magnesium transporter NIPA2 OS=Pongo abelii GN=NIPA2 PE=2 SV=1

 Score =  239 bits (611), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/245 (50%), Positives = 174/245 (71%), Gaps = 7/245 (2%)

Query: 20  GLILALSSSIFIGSSFIVKKKGLKKAGASG-VRAGFGGYSYLYEPLWWVGMITMVVGEIA 78
           GL LA+SSSIFIG SFI+KKKGL +    G +RAG GG++YL E LWW G+++M  GE+A
Sbjct: 13  GLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEVA 72

Query: 79  NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138
           NFAAYAFAPA LVTPLGALS+++SA L+   L ERL++ G +GC+L ++GST +V+HAP 
Sbjct: 73  NFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPK 132

Query: 139 EREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLS 198
           E EIE++ E+ +   +P F+++A LV+    ILIF   P++GQT+I+VYI +CS++G+ S
Sbjct: 133 EEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAFS 192

Query: 199 VMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMPI------SSLF 252
           V  VK +GIA+K   +G   L +P  W   L +IVCV TQ+NYLN  + I      + ++
Sbjct: 193 VSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIY 252

Query: 253 YLFLV 257
           Y+F  
Sbjct: 253 YVFFT 257

Acts as a selective Mg(2+) transporter.

Pongo abelii (taxid: 9601)

>sp|Q8N8Q9|NIPA2_HUMAN Magnesium transporter NIPA2 OS=Homo sapiens GN=NIPA2 PE=2 SV=1

 Score =  239 bits (611), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/245 (50%), Positives = 174/245 (71%), Gaps = 7/245 (2%)

Query: 20  GLILALSSSIFIGSSFIVKKKGLKKAGASG-VRAGFGGYSYLYEPLWWVGMITMVVGEIA 78
           GL LA+SSSIFIG SFI+KKKGL +    G +RAG GG++YL E LWW G+++M  GE+A
Sbjct: 13  GLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEVA 72

Query: 79  NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138
           NFAAYAFAPA LVTPLGALS+++SA L+   L ERL++ G +GC+L ++GST +V+HAP 
Sbjct: 73  NFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPK 132

Query: 139 EREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLS 198
           E EIE++ E+ +   +P F+++A LV+    ILIF   P++GQT+I+VYI +CS++G+ S
Sbjct: 133 EEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAFS 192

Query: 199 VMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMPI------SSLF 252
           V  VK +GIA+K   +G   L +P  W   L +IVCV TQ+NYLN  + I      + ++
Sbjct: 193 VSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIY 252

Query: 253 YLFLV 257
           Y+F  
Sbjct: 253 YVFFT 257

Acts as a selective Mg(2+) transporter.

Homo sapiens (taxid: 9606)

>sp|Q9JJC8|NIPA2_MOUSE Magnesium transporter NIPA2 OS=Mus musculus GN=Nipa2 PE=1 SV=1

 Score =  235 bits (599), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 120/245 (48%), Positives = 172/245 (70%), Gaps = 7/245 (2%)

Query: 20  GLILALSSSIFIGSSFIVKKKGLKKAGASG-VRAGFGGYSYLYEPLWWVGMITMVVGEIA 78
           GL LA++SSIFIG SFI+KKKGL +    G +RAG GG++YL E LWW G+++M  GE+A
Sbjct: 13  GLGLAMTSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEVA 72

Query: 79  NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138
           NFAAYAFAPA LVTPLGALS+++SA L+   L ERL++ G +GC+L ++GST +V+HAP 
Sbjct: 73  NFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPK 132

Query: 139 EREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLS 198
           E EIE++ E+ +   +P F+++A  V+    I IF   P++GQT+I+VYI +CS++G+ S
Sbjct: 133 EEEIETLNEMSHKLGDPGFVVFATFVVIVALIFIFVVGPRHGQTNILVYITICSVIGAFS 192

Query: 199 VMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMPI------SSLF 252
           V  VK +GIA+K  L+G   L +P  W     ++VCV TQ+NYLN  + I      + ++
Sbjct: 193 VSCVKGLGIAIKELLAGKPVLQHPLAWILLFSLVVCVSTQINYLNRALDIFNTSIVTPIY 252

Query: 253 YLFLV 257
           Y+F  
Sbjct: 253 YVFFT 257

Acts as a selective Mg(2+) transporter.

Mus musculus (taxid: 10090)

>sp|Q0D2K0|NIPA4_HUMAN Magnesium transporter NIPA4 OS=Homo sapiens GN=NIPAL4 PE=1 SV=3

 Score =  210 bits (534), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 113/258 (43%), Positives = 174/258 (67%), Gaps = 6/258 (2%)

Query: 7   HSWRDGMSSDN--IKGLILALSSSIFIGSSFIVKKKGLKKAGASG-VRAGFGGYSYLYEP 63
           HSW++ +  +     GL LA  SS  IGSS I+KKKGL +  A+G  RA  GG+ YL + 
Sbjct: 106 HSWQERIRQNYGFYIGLGLAFLSSFLIGSSVILKKKGLLRLVATGATRAVDGGFGYLKDA 165

Query: 64  LWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCI 123
           +WW G +TM  GE+ANF AYAFAPA +VTPLGALS++ISA L+   LRE L++ G LGC+
Sbjct: 166 MWWAGFLTMAAGEVANFGAYAFAPATVVTPLGALSVLISAILSSYFLRESLNLLGKLGCV 225

Query: 124 LCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTH 183
           +CV GST +V+HAP E ++ +++E+ +   +  F+++A L++ +  ILIF   P+YGQ +
Sbjct: 226 ICVAGSTVMVIHAPEEEKVTTIMEMASKMKDTGFIVFAVLLLVSCLILIFVIAPRYGQRN 285

Query: 184 IMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLN 243
           I++YI +CS++G+ SV +VK +GI +K    G+  + +P  +  +LI+ + + TQ+N+LN
Sbjct: 286 ILIYIIICSVIGAFSVAAVKGLGITIKNFFQGLPVVRHPLPYILSLILALSLSTQVNFLN 345

Query: 244 MVMPI---SSLFYLFLVF 258
             + I   S +F ++ VF
Sbjct: 346 RALDIFNTSLVFPIYYVF 363

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Ba(2+), Mn(2+), Sr(2+) and Co(2+) but to a much less extent than Mg(2+) (By similarity). May be a receptor for ligands (trioxilins A3 and B3) from the hepoxilin pathway.

Homo sapiens (taxid: 9606)

>sp|Q8BZF2|NIPA4_MOUSE Magnesium transporter NIPA4 OS=Mus musculus GN=Nipal4 PE=1 SV=1

 Score =  206 bits (524), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/243 (43%), Positives = 164/243 (67%), Gaps = 4/243 (1%)

Query: 20  GLILALSSSIFIGSSFIVKKKGLKKAGASG-VRAGFGGYSYLYEPLWWVGMITMVVGEIA 78
           G+ LA  S   IG+S I+KKKGL +  A+G  RA  GGY YL +P+WW GM TM  GE+A
Sbjct: 61  GVGLAFLSCFLIGTSVILKKKGLIRLVATGATRAVNGGYGYLKDPMWWAGMATMSAGEVA 120

Query: 79  NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138
           NF AYAFAPA +VTPLGALS++ISA  +   L E L++ G LGC++C+ GST +V+HAP 
Sbjct: 121 NFGAYAFAPATVVTPLGALSVLISAIFSSYCLGESLNLLGKLGCVICMAGSTVMVIHAPK 180

Query: 139 EREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLS 198
           E ++ +V E+ +   +  F+++A L++ +  ILIF   P+YGQ +I++YI +CS++GS S
Sbjct: 181 EEKVTTVAEMASKMKDTGFIVFAVLLVVSCLILIFIVAPRYGQRNILIYIIICSVIGSFS 240

Query: 199 VMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMPI---SSLFYLF 255
           V +VK +G+ ++    G+  + +P  +  +LI+ + ++ Q+N+LN  + I   S +F ++
Sbjct: 241 VTAVKGLGVTIRNFFQGLPVVRHPLPYILSLILGLSIIIQVNFLNRALDIFNTSLVFPIY 300

Query: 256 LVF 258
            VF
Sbjct: 301 YVF 303

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Ba(2+), Mn(2+), Sr(2+) and Co(2+) but to a much less extent than Mg(2+). May be a receptor for ligands (trioxilins A3 and B3) from the hepoxilin pathway.

Mus musculus (taxid: 10090)

>sp|Q8BMW7|NIPA3_MOUSE Magnesium transporter NIPA3 OS=Mus musculus GN=Nipal1 PE=1 SV=2

 Score =  194 bits (494), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 121/250 (48%), Positives = 170/250 (68%), Gaps = 11/250 (4%)

Query: 20  GLILALSSSIFIGSSFIVKKKGLKKAGASGV-RAGFGGYSYLYEPLWWVGMITMVVGEIA 78
           GL+LA+SSS+FIGSSFI+KKKGL +    G+ RAG GG+SYL E LWW G+++M  GE A
Sbjct: 71  GLVLAISSSVFIGSSFILKKKGLLQLADKGITRAGQGGHSYLKEWLWWAGLLSMGAGEAA 130

Query: 79  NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138
           NFAAYAFAPA LVTPLGALS++ISA L+   L ERL+I G +GCIL V+GST +V+HAP 
Sbjct: 131 NFAAYAFAPATLVTPLGALSVLISAILSSYFLNERLNIHGKIGCILSVLGSTVMVIHAPQ 190

Query: 139 EREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLS 198
           E E+ S+ E+     +P F+ +A ++     +LI    P+ GQT+I+VYI +CSL+G+ S
Sbjct: 191 EGEVTSLHEMEMKLRDPGFVSFAVIISVISLVLILIVAPKKGQTNILVYIAICSLIGAFS 250

Query: 199 VMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVC--VLTQMNYLNMVMP------ISS 250
           V SVK +GIA+K  L    + +Y     F L+ ++   V TQ+NYLN  +       ++ 
Sbjct: 251 VSSVKGLGIAIKELLE--RKPVYKDPLFFILLTMLALSVTTQINYLNKALDTFNTSLVTP 308

Query: 251 LFYLFLVFII 260
           ++Y+F   ++
Sbjct: 309 IYYVFFTSMV 318

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+), Cu(2+) and Co(2+) but to a much less extent than Mg(2+).

Mus musculus (taxid: 10090)

>sp|Q5RDB8|NIPA3_PONAB Magnesium transporter NIPA3 OS=Pongo abelii GN=NIPAL1 PE=2 SV=1

 Score =  171 bits (432), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 120/248 (48%), Positives = 171/248 (68%), Gaps = 7/248 (2%)

Query: 20  GLILALSSSIFIGSSFIVKKKGLKKAGASGV-RAGFGGYSYLYEPLWWVGMITMVVGEIA 78
           GL+LA+SSSIFIGSSFI+KKKGL +  + G+ RAG GG+SYL E LWWVG+++M VGE A
Sbjct: 71  GLVLAVSSSIFIGSSFILKKKGLLQLASKGITRAGQGGHSYLKEWLWWVGLLSMGVGEAA 130

Query: 79  NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138
           NFAAYAFAPA LVTPLGALS++ISA L+   L E L+I G +GCIL ++GST +V+HAP 
Sbjct: 131 NFAAYAFAPATLVTPLGALSVLISAILSSYFLNEHLNIHGKIGCILSILGSTVMVIHAPQ 190

Query: 139 EREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLS 198
           E E+ S+ E+     +P F+ +A +V     +LI    P+ GQT+I+VYI +CSL+G+ S
Sbjct: 191 EEEVTSLHEMEMKLRDPGFISFAVIVTVISLVLILIVAPKKGQTNILVYISICSLIGAFS 250

Query: 199 VMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMP------ISSLF 252
           V SVK +GIA+K  +       +P  +    ++++ V TQ+NYLN  +       ++ ++
Sbjct: 251 VSSVKGLGIAIKELIEWKPVYKHPLVFVLLAVLVLSVTTQINYLNKALDTFNTSIVTPIY 310

Query: 253 YLFLVFII 260
           Y+F   ++
Sbjct: 311 YVFFTSMV 318

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+), Cu(2+) and Co(2+) but to a much less extent than Mg(2+).

Pongo abelii (taxid: 9601)

>sp|Q6NVV3|NIPA3_HUMAN Magnesium transporter NIPA3 OS=Homo sapiens GN=NIPAL1 PE=2 SV=1

 Score =  167 bits (424), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/248 (47%), Positives = 169/248 (68%), Gaps = 7/248 (2%)

Query: 20  GLILALSSSIFIGSSFIVKKKGLKKAGASG-VRAGFGGYSYLYEPLWWVGMITMVVGEIA 78
           GL+LA+SSSIFIGSSFI+KKKGL +  + G  RAG GG+SYL E LWWVG+++M  GE A
Sbjct: 71  GLVLAVSSSIFIGSSFILKKKGLLQLASKGFTRAGQGGHSYLKEWLWWVGLLSMGAGEAA 130

Query: 79  NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138
           NFAAYAFAPA LVTPLGALS++ISA L+   L E L+I G +GCIL ++GST +V+HAP 
Sbjct: 131 NFAAYAFAPATLVTPLGALSVLISAILSSYFLNEHLNIHGKIGCILSILGSTVMVIHAPQ 190

Query: 139 EREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLS 198
           E E+ S+ E+     +P F+ +A ++     +LI    P+ GQT+I+VYI +CSL+G+ S
Sbjct: 191 EEEVTSLHEMEMKLRDPGFISFAVIITVISLVLILIVAPKKGQTNILVYISICSLIGAFS 250

Query: 199 VMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMP------ISSLF 252
           V SVK +GIA+K  +       +P  +    ++++ V TQ+NYLN  +       ++ ++
Sbjct: 251 VSSVKGLGIAIKELIEWKPVYKHPLVFVLLAVLVLSVTTQINYLNKALDTFNTSLVTPIY 310

Query: 253 YLFLVFII 260
           Y+F   ++
Sbjct: 311 YVFFTSMV 318

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+), Cu(2+) and Co(2+) but to a much less extent than Mg(2+).

Homo sapiens (taxid: 9606)

>sp|Q7RTP0|NIPA1_HUMAN Magnesium transporter NIPA1 OS=Homo sapiens GN=NIPA1 PE=1 SV=1

 Score =  153 bits (387), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/191 (42%), Positives = 120/191 (62%), Gaps = 7/191 (3%)

Query: 20  GLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIAN 79
           GL +A+ SS+  GS+F+++KKG+       VRA   G SYL + +WW G I M VG+I N
Sbjct: 31  GLGVAVVSSLVNGSTFVLQKKGI-------VRAKRRGTSYLTDIVWWAGTIAMAVGQIGN 83

Query: 80  FAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE 139
           F AY   P +LVTPLGAL +   + LA  +L+E+L+I G LGC+L   GS  +++H+P  
Sbjct: 84  FLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVVLIIHSPKS 143

Query: 140 REIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSV 199
             + +  E+    T P F+ Y  +V+  + +LIF   P +G T+IMVYI +CSL+GS +V
Sbjct: 144 ESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSFTV 203

Query: 200 MSVKAIGIALK 210
            S K IG+A +
Sbjct: 204 PSTKGIGLAAQ 214

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
449495529	346	PREDICTED: magnesium transporter NIPA2-l	0.934	0.702	0.905	1e-116
388520797	349	unknown [Lotus japonicus]	0.930	0.693	0.880	1e-113
255576223	345	Non-imprinted in Prader-Willi/Angelman s	0.923	0.695	0.888	1e-113
255647985	350	unknown [Glycine max]	0.969	0.72	0.845	1e-113
356543405	350	PREDICTED: magnesium transporter NIPA2-l	0.969	0.72	0.845	1e-113
356560745	347	PREDICTED: magnesium transporter NIPA2-l	0.969	0.726	0.837	1e-112
388492250	349	unknown [Lotus japonicus]	0.930	0.693	0.876	1e-112
357445353	341	Magnesium transporter NIPA2 [Medicago tr	0.934	0.712	0.876	1e-111
359486259	347	PREDICTED: magnesium transporter NIPA2 [	0.923	0.691	0.871	1e-111
357445357	248	Magnesium transporter NIPA2 [Medicago tr	0.942	0.987	0.873	1e-111

>gi|449495529|ref|XP_004159868.1| PREDICTED: magnesium transporter NIPA2-like [Cucumis sativus]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/243 (90%), Positives = 228/243 (93%)

Query: 1   MADPNGHSWRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYL 60
           MA     SWR+GMSSDNIKGLILALSSS FIG+SFIVKKKGLKKAGASGVRAG GGYSYL
Sbjct: 1   MATSQTPSWREGMSSDNIKGLILALSSSFFIGASFIVKKKGLKKAGASGVRAGVGGYSYL 60

Query: 61  YEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGIL 120
           YEPLWWVGMITM+VGEIANFAAYAFAPAILVTPLGALSIIISA LAHIILRERLHIFGIL
Sbjct: 61  YEPLWWVGMITMIVGEIANFAAYAFAPAILVTPLGALSIIISAVLAHIILRERLHIFGIL 120

Query: 121 GCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYG 180
           GC+LCVVGSTTIVLHAP EREIESV EVW +A EPAFLLYAA V+TAVFILIFH+IPQYG
Sbjct: 121 GCVLCVVGSTTIVLHAPQEREIESVTEVWQMAMEPAFLLYAASVMTAVFILIFHFIPQYG 180

Query: 181 QTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMN 240
           QTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTW FTL+VI CVLTQMN
Sbjct: 181 QTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWIFTLVVITCVLTQMN 240

Query: 241 YLN 243
           YLN
Sbjct: 241 YLN 243

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520797|gb|AFK48460.1| unknown [Lotus japonicus]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/242 (88%), Positives = 227/242 (93%)

Query: 5   NGHSWRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPL 64
           N  SWR+GMSSDNIKGL+LALSSS FIG+SFIVKKKGLKKAGASG+RAG GGYSYLYEPL
Sbjct: 6   NPSSWREGMSSDNIKGLVLALSSSFFIGASFIVKKKGLKKAGASGIRAGSGGYSYLYEPL 65

Query: 65  WWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCIL 124
           WWVGMITM+VGEIANFAAYAFAPA+LVTPLGALSIIISAALAHIILRERLHIFG+LGC L
Sbjct: 66  WWVGMITMIVGEIANFAAYAFAPALLVTPLGALSIIISAALAHIILRERLHIFGVLGCAL 125

Query: 125 CVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHI 184
           CVVGSTTIVLHAP EREIESV EVW+LA EPAFL YAALVITA F+LIFH+IP YGQTHI
Sbjct: 126 CVVGSTTIVLHAPQEREIESVTEVWDLAMEPAFLFYAALVITAAFVLIFHFIPLYGQTHI 185

Query: 185 MVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNM 244
           MVYIGVCSLVGSLSVMSVKA+GIA+KLTLSGMNQLIYPQTW FTL+V VCVLTQMNYLN 
Sbjct: 186 MVYIGVCSLVGSLSVMSVKALGIAIKLTLSGMNQLIYPQTWVFTLVVTVCVLTQMNYLNK 245

Query: 245 VM 246
            +
Sbjct: 246 AL 247

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576223|ref|XP_002529005.1| Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis] gi|223531545|gb|EEF33375.1| Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/243 (88%), Positives = 227/243 (93%), Gaps = 3/243 (1%)

Query: 7   HSWRD---GMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEP 63
            SWRD   GMSSDNIKGL+LALSSS FIG+SFIVKKKGLKKAGASG+RAG GGYSYLYEP
Sbjct: 4   QSWRDSYKGMSSDNIKGLVLALSSSFFIGASFIVKKKGLKKAGASGLRAGSGGYSYLYEP 63

Query: 64  LWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCI 123
           LWWVGMITM+VGEIANFAAYAFAPAILVTPLGALSIIISA LAHIIL E+LHIFGILGC+
Sbjct: 64  LWWVGMITMIVGEIANFAAYAFAPAILVTPLGALSIIISAVLAHIILNEKLHIFGILGCV 123

Query: 124 LCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTH 183
           LCVVGSTTIVLHAP EREIESV EVW+LATEPAFL YAALVITAVFILIFHYIP YGQTH
Sbjct: 124 LCVVGSTTIVLHAPQEREIESVKEVWDLATEPAFLFYAALVITAVFILIFHYIPDYGQTH 183

Query: 184 IMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLN 243
           IMVYIGVCSLVGSLSVMSVKA+GIALKLTLSGMNQLIYPQTWAF L+VI CV+TQMNYLN
Sbjct: 184 IMVYIGVCSLVGSLSVMSVKALGIALKLTLSGMNQLIYPQTWAFALVVITCVVTQMNYLN 243

Query: 244 MVM 246
             +
Sbjct: 244 KAL 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647985|gb|ACU24449.1| unknown [Glycine max]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/259 (84%), Positives = 235/259 (90%), Gaps = 7/259 (2%)

Query: 9   WRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVG 68
           WR+GMSSDNIKGL LALSSS FIG+SFIVKKKGLKKAGASG+RAG GGYSYLYEPLWWVG
Sbjct: 13  WREGMSSDNIKGLCLALSSSFFIGASFIVKKKGLKKAGASGIRAGSGGYSYLYEPLWWVG 72

Query: 69  MITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVG 128
           MITM+VGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGC+LCVVG
Sbjct: 73  MITMIVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCVLCVVG 132

Query: 129 STTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYI 188
           STTIVLHAP EREIESV EVW+LA EPAFL YAALVITA FILIFH+IP YGQTHIMVYI
Sbjct: 133 STTIVLHAPQEREIESVSEVWDLAMEPAFLFYAALVITATFILIFHFIPLYGQTHIMVYI 192

Query: 189 GVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMP- 247
           GVCSLVGSL+VMSVKA+GI +KLTLSGMNQLIYPQTWAFTL+VIVCVLTQMNYLN  +  
Sbjct: 193 GVCSLVGSLTVMSVKALGIVIKLTLSGMNQLIYPQTWAFTLVVIVCVLTQMNYLNKALDT 252

Query: 248 -----ISSLFY-LFLVFII 260
                +S ++Y +F  F I
Sbjct: 253 FNTAVVSPIYYVMFTTFTI 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543405|ref|XP_003540151.1| PREDICTED: magnesium transporter NIPA2-like [Glycine max]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/259 (84%), Positives = 235/259 (90%), Gaps = 7/259 (2%)

Query: 9   WRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVG 68
           WR+GMSSDNIKGL LALSSS FIG+SFIVKKKGLKKAGASG+RAG GGYSYLYEPLWWVG
Sbjct: 13  WREGMSSDNIKGLCLALSSSFFIGASFIVKKKGLKKAGASGIRAGSGGYSYLYEPLWWVG 72

Query: 69  MITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVG 128
           MITM+VGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGC+LCVVG
Sbjct: 73  MITMIVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCVLCVVG 132

Query: 129 STTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYI 188
           STTIVLHAP EREIESV EVW+LA EPAFL YAALVITA FILIFH+IP YGQTHIMVYI
Sbjct: 133 STTIVLHAPQEREIESVSEVWDLAMEPAFLFYAALVITATFILIFHFIPLYGQTHIMVYI 192

Query: 189 GVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMP- 247
           GVCSLVGSL+VMSVKA+GI +KLTLSGMNQLIYPQTWAFTL+VIVCVLTQMNYLN  +  
Sbjct: 193 GVCSLVGSLTVMSVKALGIVIKLTLSGMNQLIYPQTWAFTLVVIVCVLTQMNYLNKALDT 252

Query: 248 -----ISSLFY-LFLVFII 260
                +S ++Y +F  F I
Sbjct: 253 FNTAVVSPIYYVMFTTFTI 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560745|ref|XP_003548648.1| PREDICTED: magnesium transporter NIPA2-like [Glycine max]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/259 (83%), Positives = 235/259 (90%), Gaps = 7/259 (2%)

Query: 9   WRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVG 68
           WR+GMSSDNIKGL LALSSS FIG+SFIVKKKGLKKAGASG+RAG GGYSYLYEPLWWVG
Sbjct: 10  WREGMSSDNIKGLCLALSSSFFIGASFIVKKKGLKKAGASGIRAGSGGYSYLYEPLWWVG 69

Query: 69  MITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVG 128
           MITM+VGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGC+LCVVG
Sbjct: 70  MITMIVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCVLCVVG 129

Query: 129 STTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYI 188
           STTIVLHAP EREIESV EVW+LA EPAFL YAA+VITA FILIFH+IP YGQTHIMVYI
Sbjct: 130 STTIVLHAPQEREIESVSEVWDLAMEPAFLFYAAMVITATFILIFHFIPLYGQTHIMVYI 189

Query: 189 GVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMP- 247
           GVCSLVGSL+VMSVKA+GI +KLTLSGMNQLIYPQTWAFTL+V+VCVLTQMNYLN  +  
Sbjct: 190 GVCSLVGSLTVMSVKALGIVIKLTLSGMNQLIYPQTWAFTLVVLVCVLTQMNYLNKALDT 249

Query: 248 -----ISSLFY-LFLVFII 260
                +S ++Y +F  F I
Sbjct: 250 FNTAVVSPIYYVMFTTFTI 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492250|gb|AFK34191.1| unknown [Lotus japonicus]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/242 (87%), Positives = 226/242 (93%)

Query: 5   NGHSWRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPL 64
           N  SWR+GMSSDNIKGL+LALSSS FIG+SFIVKKKGLKKAGASG+RAG GGYSYLYEPL
Sbjct: 6   NPSSWREGMSSDNIKGLVLALSSSFFIGASFIVKKKGLKKAGASGIRAGSGGYSYLYEPL 65

Query: 65  WWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCIL 124
           WWVGMITM+VGEIANFAAYAFAPA+LVTPLGALSIIISAALAHIILRERLHIFG+LGC L
Sbjct: 66  WWVGMITMIVGEIANFAAYAFAPALLVTPLGALSIIISAALAHIILRERLHIFGVLGCAL 125

Query: 125 CVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHI 184
           CVVGSTTIVLHAP EREI SV EVW+LA EPAFL YAALVITA F+LIFH+IP YGQTHI
Sbjct: 126 CVVGSTTIVLHAPQEREIGSVTEVWDLAMEPAFLFYAALVITAAFVLIFHFIPLYGQTHI 185

Query: 185 MVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNM 244
           MVYIGVCSLVGSLSVMSVKA+GIA+KLTLSGMNQLIYPQTW FTL+V VCVLTQMNYLN 
Sbjct: 186 MVYIGVCSLVGSLSVMSVKALGIAIKLTLSGMNQLIYPQTWVFTLVVTVCVLTQMNYLNK 245

Query: 245 VM 246
            +
Sbjct: 246 AL 247

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445353|ref|XP_003592954.1| Magnesium transporter NIPA2 [Medicago truncatula] gi|355482002|gb|AES63205.1| Magnesium transporter NIPA2 [Medicago truncatula]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/243 (87%), Positives = 227/243 (93%)

Query: 1   MADPNGHSWRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYL 60
           MA  +  SWR+GMSSDNIKGL+LALSSS FIG+SFIVKKKGLKKAGASG+RAG GGYSYL
Sbjct: 1   MASSSSSSWREGMSSDNIKGLVLALSSSFFIGASFIVKKKGLKKAGASGIRAGSGGYSYL 60

Query: 61  YEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGIL 120
           YEPLWWVGMITM+VGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFG+L
Sbjct: 61  YEPLWWVGMITMIVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGVL 120

Query: 121 GCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYG 180
           GC LCVVGSTTIVLHAP EREIESV EVW+LA +PAFL YAALVITA FIL+FH+IP YG
Sbjct: 121 GCALCVVGSTTIVLHAPQEREIESVPEVWDLAMDPAFLFYAALVITATFILVFHFIPLYG 180

Query: 181 QTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMN 240
           QTHIMVYIGVCSLVGSLSVMSVKA+GIA+KLTLSGMNQLIYPQTW F L+V VCVLTQMN
Sbjct: 181 QTHIMVYIGVCSLVGSLSVMSVKALGIAIKLTLSGMNQLIYPQTWVFALVVTVCVLTQMN 240

Query: 241 YLN 243
           YLN
Sbjct: 241 YLN 243

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486259|ref|XP_002264759.2| PREDICTED: magnesium transporter NIPA2 [Vitis vinifera]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/241 (87%), Positives = 229/241 (95%), Gaps = 1/241 (0%)

Query: 3   DPNGHSWRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYE 62
           +   +S++ GMS+DNIKGL+LALSSS FIG+SFIVKKKGLKKAGASG+RAG GGYSYLYE
Sbjct: 6   EEGAYSYK-GMSADNIKGLVLALSSSFFIGASFIVKKKGLKKAGASGIRAGVGGYSYLYE 64

Query: 63  PLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGC 122
           PLWWVGMITM+VGEIANFAAYAFAPAILVTPLGALSIIISA LAHIILRE+LHIFGILGC
Sbjct: 65  PLWWVGMITMIVGEIANFAAYAFAPAILVTPLGALSIIISAVLAHIILREKLHIFGILGC 124

Query: 123 ILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQT 182
           +LCVVGSTTIVLHAP EREI+SVIEVW+LATEPAFL YAALVITAVF+LI H+IPQYGQT
Sbjct: 125 VLCVVGSTTIVLHAPQEREIQSVIEVWDLATEPAFLFYAALVITAVFVLIIHFIPQYGQT 184

Query: 183 HIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYL 242
           HIMVYIGVCSLVGSLSVMSVKA+GIALKLTLSGMNQL YPQTWAFT++VI CV+TQMNYL
Sbjct: 185 HIMVYIGVCSLVGSLSVMSVKALGIALKLTLSGMNQLTYPQTWAFTIVVITCVITQMNYL 244

Query: 243 N 243
           N
Sbjct: 245 N 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445357|ref|XP_003592956.1| Magnesium transporter NIPA2 [Medicago truncatula] gi|355482004|gb|AES63207.1| Magnesium transporter NIPA2 [Medicago truncatula]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/245 (87%), Positives = 228/245 (93%)

Query: 1   MADPNGHSWRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYL 60
           MA  +  SWR+GMSSDNIKGL+LALSSS FIG+SFIVKKKGLKKAGASG+RAG GGYSYL
Sbjct: 1   MASSSSSSWREGMSSDNIKGLVLALSSSFFIGASFIVKKKGLKKAGASGIRAGSGGYSYL 60

Query: 61  YEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGIL 120
           YEPLWWVGMITM+VGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFG+L
Sbjct: 61  YEPLWWVGMITMIVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGVL 120

Query: 121 GCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYG 180
           GC LCVVGSTTIVLHAP EREIESV EVW+LA +PAFL YAALVITA FIL+FH+IP YG
Sbjct: 121 GCALCVVGSTTIVLHAPQEREIESVPEVWDLAMDPAFLFYAALVITATFILVFHFIPLYG 180

Query: 181 QTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMN 240
           QTHIMVYIGVCSLVGSLSVMSVKA+GIA+KLTLSGMNQLIYPQTW F L+V VCVLTQMN
Sbjct: 181 QTHIMVYIGVCSLVGSLSVMSVKALGIAIKLTLSGMNQLIYPQTWVFALVVTVCVLTQMN 240

Query: 241 YLNMV 245
           YLN V
Sbjct: 241 YLNKV 245

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
TAIR|locus:2009343	368	AT1G34470 "AT1G34470" [Arabido	0.942	0.665	0.610	5e-76
TAIR|locus:2016084	343	AT1G71900 "AT1G71900" [Arabido	0.942	0.714	0.598	2.1e-75
TAIR|locus:2136912	386	AT4G09640 "AT4G09640" [Arabido	0.919	0.619	0.582	1.1e-71
TAIR|locus:2076186	335	AT3G23870 "AT3G23870" [Arabido	0.961	0.746	0.486	7.9e-62
TAIR|locus:2119540	336	AT4G13800 [Arabidopsis thalian	0.953	0.738	0.490	7.9e-62
TAIR|locus:2047112	328	AT2G21120 [Arabidopsis thalian	0.761	0.603	0.505	1.8e-55
TAIR|locus:2141742	326	AT4G38730 "AT4G38730" [Arabido	0.765	0.610	0.487	7.2e-52
CGD|CAL0004327	368	orf19.5352 [Candida albicans (	0.819	0.578	0.390	5.7e-43
UNIPROTKB|Q5A5P7	368	CaO19.12812 "Putative uncharac	0.819	0.578	0.390	5.7e-43
UNIPROTKB|Q8N8Q9	360	NIPA2 "Magnesium transporter N	0.765	0.552	0.412	6.8e-40

TAIR|locus:2009343 AT1G34470 "AT1G34470" [Arabidopsis thaliana (taxid:3702)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 152/249 (61%), Positives = 171/249 (68%)

Query:     1 MADPNGHSWRD---GMSSDNIKXXXXXXXXXXXXXXXXXVXXXXXXXXXXSGVRAGFGGY 57
             MA  +G SWRD   GMSSDNIK                 V          SG+RAG GGY
Sbjct:     1 MASLSG-SWRDAYKGMSSDNIKGLVLALSSSLFIGASFIVKKKGLKRAGASGLRAGSGGY 59

Query:    58 SYLYEPLWWVGMITMVVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXRERLHIF 117
             SYL EPLWWVGMITM+VGEI           ILVTP                  E+LH F
Sbjct:    60 SYLLEPLWWVGMITMIVGEIANFAAYAFAPAILVTPLGALSIIISAALAHVILHEKLHTF 119

Query:   118 GILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIP 177
             G+LGC+LCVVGS TIVLHAP E+EI+SV++VWNLATEPAFLLYAA V+ A  ILI  ++P
Sbjct:   120 GLLGCVLCVVGSITIVLHAPQEQEIDSVLQVWNLATEPAFLLYAAAVVGAAIILIVQFVP 179

Query:   178 QYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLT 237
             QYGQ+H+MVYIGVCSLVGSLSVMSVKA+GIALKLT SGMNQLIYPQTW FTLIV+ CV+T
Sbjct:   180 QYGQSHVMVYIGVCSLVGSLSVMSVKALGIALKLTFSGMNQLIYPQTWVFTLIVLTCVIT 239

Query:   238 QMNYLNMVM 246
             QMNYLN  +
Sbjct:   240 QMNYLNKAL 248

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016084 AT1G71900 "AT1G71900" [Arabidopsis thaliana (taxid:3702)]

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 149/249 (59%), Positives = 170/249 (68%)

Query:     1 MADPNGHSWRD---GMSSDNIKXXXXXXXXXXXXXXXXXVXXXXXXXXXXSGVRAGFGGY 57
             MA+ +G SWRD   GMSSDNIK                 V          +G RAG GGY
Sbjct:     1 MAESSG-SWRDSYKGMSSDNIKGLVLALSSSLFIGASFIVKKKGLKKAASTGTRAGVGGY 59

Query:    58 SYLYEPLWWVGMITMVVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXRERLHIF 117
             SYLYEPLWW+GM TM++GEI           ILVTP                 RE+LHIF
Sbjct:    60 SYLYEPLWWIGMTTMLLGEIANFAAYAFAPAILVTPLGAVSIIISAVLAHIILREKLHIF 119

Query:   118 GILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIP 177
             GILGC LCVVGSTTIVLHAP EREI+SVIEVWNLATEPAF+ YA+LVI A   LI  ++P
Sbjct:   120 GILGCALCVVGSTTIVLHAPQEREIDSVIEVWNLATEPAFMFYASLVIGAAVFLIIRFVP 179

Query:   178 QYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLT 237
             QYGQT++MVYIG+CSLVGSLSVMSVKA+GIALKLT SG NQL YPQTW FTL+V+ CV+T
Sbjct:   180 QYGQTNVMVYIGICSLVGSLSVMSVKALGIALKLTFSGTNQLFYPQTWIFTLVVLTCVVT 239

Query:   238 QMNYLNMVM 246
             Q+NYLN  +
Sbjct:   240 QLNYLNKAL 248

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2136912 AT4G09640 "AT4G09640" [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 141/242 (58%), Positives = 162/242 (66%)

Query:     8 SWRD---GMSSDNIKXXXXXXXXXXXXXXXXXVXXXXXXXXXXSGVRAGFGGYSYLYEPL 64
             SWRD   GMSSDN+K                 V          SG+RAG GGYSYL EPL
Sbjct:     7 SWRDAYKGMSSDNVKGLVLALSSSIFIGASFIVKKKGLKKAGASGLRAGSGGYSYLLEPL 66

Query:    65 WWVGMITMVVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXRERLHIFGILGCIL 124
             WW+GMITM+VGEI           ILVTP                 +E+LH FGILGC L
Sbjct:    67 WWIGMITMIVGEIANFAAYAFAPAILVTPLGALSIIISASLAHIILQEKLHTFGILGCAL 126

Query:   125 CVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHI 184
             C+VGS TIVLHAP E++I SV+EVWNLATEPAFL YAA V+ A  +LI  +IP YGQ+H+
Sbjct:   127 CIVGSVTIVLHAPQEQDIVSVLEVWNLATEPAFLFYAAAVVGAAIVLIVQFIPLYGQSHV 186

Query:   185 MVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNM 244
             MVYIGVCSL+GSLSVMSVKA+GIALKLT SG NQL YPQTW FT+IV+ CV+TQMNYLN 
Sbjct:   187 MVYIGVCSLIGSLSVMSVKALGIALKLTFSGTNQLGYPQTWVFTVIVLFCVITQMNYLNK 246

Query:   245 VM 246
              +
Sbjct:   247 AL 248

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076186 AT3G23870 "AT3G23870" [Arabidopsis thaliana (taxid:3702)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 125/257 (48%), Positives = 158/257 (61%)

Query:    11 DGMSSDNIKXXXXXXXXXXXXXXXXXVXXXXXXXXXXSGVRAGFGGYSYLYEPLWWVGMI 70
             D MS DNI                  +          SGVRAG GGY YL EP WW GMI
Sbjct:     2 DQMSPDNINGVILAVSSSIFIGSSFIIKKKGLKKAGASGVRAGEGGYGYLKEPWWWAGMI 61

Query:    71 TMVVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXRERLHIFGILGCILCVVGST 130
             TM+VGE+           ILVTP                 +E+LH+FGILGCILCVVGST
Sbjct:    62 TMIVGEVANFAAYAFAPAILVTPLGALSIIFSAVLAHFILKEKLHMFGILGCILCVVGST 121

Query:   131 TIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGV 190
             TIVLHAP E++IESV ++W LA EP FL+Y+A+++  V ILIF+Y P+YG+TH++VY+G+
Sbjct:   122 TIVLHAPHEQKIESVKQIWQLAIEPGFLVYSAVIVIVVAILIFYYEPRYGKTHMIVYVGI 181

Query:   191 CSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMP--- 247
             CSL+GSL+VMSVKA+ IA+KLT SG NQ  Y  TW F L+V  C + Q+NYLN  +    
Sbjct:   182 CSLMGSLTVMSVKAVAIAIKLTFSGTNQFKYFNTWIFILVVATCCILQINYLNKALDTFN 241

Query:   248 ---ISSLFY-LFLVFII 260
                IS ++Y +F  F I
Sbjct:   242 TAVISPVYYVMFTTFTI 258

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2119540 AT4G13800 [Arabidopsis thaliana (taxid:3702)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 125/255 (49%), Positives = 156/255 (61%)

Query:    13 MSSDNIKXXXXXXXXXXXXXXXXXVXXXXXXXXXXSGVRAGFGGYSYLYEPLWWVGMITM 72
             MS DNI                  +          SG RAG GGY YLYEP WW GMITM
Sbjct:     4 MSPDNIHGVILAVSSSIFIGSSFIIKKKGLKKAGVSGARAGEGGYGYLYEPWWWAGMITM 63

Query:    73 VVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXRERLHIFGILGCILCVVGSTTI 132
             +VGEI           ILVTP                  E+LH+FGILGC+LCVVGSTTI
Sbjct:    64 IVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILEEKLHMFGILGCVLCVVGSTTI 123

Query:   133 VLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCS 192
             VLHAP E+ IESV +VW+LATEP FL Y+A+V+  V  LIF+Y P+YG+TH++VY+G+CS
Sbjct:   124 VLHAPHEQGIESVKQVWHLATEPGFLAYSAVVLVVVLALIFYYEPRYGKTHMIVYVGICS 183

Query:   193 LVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMP----- 247
             L+GSL+VMSVKA+ IA+KLT SGMNQ  Y   W F ++V +C + Q+NYLN  +      
Sbjct:   184 LMGSLTVMSVKAVAIAIKLTFSGMNQFKYFHAWIFIIVVTICCILQINYLNKALDNFNTA 243

Query:   248 -ISSLFY-LFLVFII 260
              IS ++Y +F  F I
Sbjct:   244 VISPVYYVMFTTFTI 258

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2047112 AT2G21120 [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 100/198 (50%), Positives = 137/198 (69%)

Query:    49 GVRAGFGGYSYLYEPLWWVGMITMVVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXX 108
             G RAG+GGY+YL EPLWW GM+TM+VGE            +LVTP               
Sbjct:    37 GTRAGYGGYTYLLEPLWWAGMVTMIVGEAANFVAYIYAPAVLVTPLGALSIIISAVLAHF 96

Query:   109 XXRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAV 168
               +E+L   G+LGC+ C+VGS  IV+HAP E+   SV E+WNLAT+PAFL+Y A+ ++ V
Sbjct:    97 LLKEKLKKMGVLGCVSCIVGSVVIVIHAPKEQTPNSVEEIWNLATQPAFLIYVAITMSIV 156

Query:   169 FILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFT 228
               LI H+ P  GQT+I+VYIG+CSL+G+L+VMS+KAIGIA+KLT+ G++Q+ YPQTW F 
Sbjct:   157 LALILHFEPLCGQTNILVYIGICSLMGALTVMSIKAIGIAIKLTMEGVSQIGYPQTWLFV 216

Query:   229 LIVIVCVLTQMNYLNMVM 246
             ++ + CV+TQ+ YLN  +
Sbjct:   217 MVAVTCVVTQLIYLNKAL 234

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

TAIR|locus:2141742 AT4G38730 "AT4G38730" [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 97/199 (48%), Positives = 131/199 (65%)

Query:    48 SGVRAGFGGYSYLYEPLWWVGMITMVVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXX 107
             +G RAGFGGY+YL EPLWWVG++TM  GEI           +LVTP              
Sbjct:    36 NGTRAGFGGYTYLLEPLWWVGLVTMTFGEIANFVAYVYAPAVLVTPLGALSIIISAVLAH 95

Query:   108 XXXRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITA 167
                 E+L   G+ GC+ C+VGS  IV+HAP E+   SV E+W LA +PAFL+Y A+ ++ 
Sbjct:    96 FLLDEKLRKMGVWGCVCCIVGSVMIVIHAPQEQTPNSVEEIWKLAMQPAFLIYVAISMSI 155

Query:   168 VFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAF 227
             V  LI +  P  GQT+I+VYIG+CSL+GSL+VMS+KA+GIA+KLT  G+NQ+ YP+TW F
Sbjct:   156 VLALILYCEPLCGQTNILVYIGICSLMGSLTVMSIKAVGIAIKLTFEGINQIWYPETWFF 215

Query:   228 TLIVIVCVLTQMNYLNMVM 246
              ++  +CV+ QM YLN  +
Sbjct:   216 AMVAAICVVMQMIYLNKAL 234

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

CGD|CAL0004327 orf19.5352 [Candida albicans (taxid:5476)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 86/220 (39%), Positives = 127/220 (57%)

Query:    48 SGVRAGFGGYSYLYEPLWWVGMITMVVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXX 107
             +G   G     YL  P+WW GMITM +GEI           ILVTP              
Sbjct:    36 TGGTDGVQASDYLQNPIWWGGMITMAIGEIANFAAYTFAPAILVTPLGALSVIIGAVLAA 95

Query:   108 XXXRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITA 167
                +ERL   G +GC +C++GS  I+LHAP ++E+++V E+   AT+P F+ Y  +V   
Sbjct:    96 IFLKERLGTLGKMGCAICLMGSVIIILHAPPDKEVQTVDEILGYATQPGFMFYCTVVTLY 155

Query:   168 VFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAF 227
                +I+  +P+YG T+ M+Y+ +CS VGS+SVMS+KA GIALKLTL G NQ  +  T+ F
Sbjct:   156 SLFMIYKIVPKYGNTNPMIYLSICSSVGSISVMSIKAFGIALKLTLGGNNQFTHVSTYLF 215

Query:   228 TLIVIVCVLTQMNYLNMVMP------ISSLFYL-FLVFII 260
              ++V +C++TQMNY N  +       ++ L+Y+ F  F +
Sbjct:   216 LIVVALCIVTQMNYFNKALDQFDTSIVNPLYYVTFTTFTL 255

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A5P7 CaO19.12812 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 86/220 (39%), Positives = 127/220 (57%)

Query:    48 SGVRAGFGGYSYLYEPLWWVGMITMVVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXX 107
             +G   G     YL  P+WW GMITM +GEI           ILVTP              
Sbjct:    36 TGGTDGVQASDYLQNPIWWGGMITMAIGEIANFAAYTFAPAILVTPLGALSVIIGAVLAA 95

Query:   108 XXXRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITA 167
                +ERL   G +GC +C++GS  I+LHAP ++E+++V E+   AT+P F+ Y  +V   
Sbjct:    96 IFLKERLGTLGKMGCAICLMGSVIIILHAPPDKEVQTVDEILGYATQPGFMFYCTVVTLY 155

Query:   168 VFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAF 227
                +I+  +P+YG T+ M+Y+ +CS VGS+SVMS+KA GIALKLTL G NQ  +  T+ F
Sbjct:   156 SLFMIYKIVPKYGNTNPMIYLSICSSVGSISVMSIKAFGIALKLTLGGNNQFTHVSTYLF 215

Query:   228 TLIVIVCVLTQMNYLNMVMP------ISSLFYL-FLVFII 260
              ++V +C++TQMNY N  +       ++ L+Y+ F  F +
Sbjct:   216 LIVVALCIVTQMNYFNKALDQFDTSIVNPLYYVTFTTFTL 255

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8N8Q9 NIPA2 "Magnesium transporter NIPA2" [Homo sapiens (taxid:9606)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 82/199 (41%), Positives = 121/199 (60%)

Query:    50 VRAGFGGYSYLYEPLWWVGMITMVVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXX 109
             +RAG GG++YL E LWW G+++M  GE+            LVTP                
Sbjct:    44 MRAGQGGHAYLKEWLWWAGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYF 103

Query:   110 XRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVF 169
               ERL++ G +GC+L ++GST +V+HAP E EIE++ E+ +   +P F+++A LV+    
Sbjct:   104 LNERLNLHGKIGCLLSILGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVAL 163

Query:   170 ILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTL 229
             ILIF   P++GQT+I+VYI +CS++G+ SV  VK +GIA+K   +G   L +P  W   L
Sbjct:   164 ILIFVVGPRHGQTNILVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLL 223

Query:   230 IVIVCVLTQMNYLNMVMPI 248
              +IVCV TQ+NYLN  + I
Sbjct:   224 SLIVCVSTQINYLNRALDI 242

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3SWX0	NIPA2_BOVIN	No assigned EC number	0.5061	0.9153	0.6611	yes	no
Q5R7Q3	NIPA2_PONAB	No assigned EC number	0.5061	0.9153	0.6611	yes	no
Q8N8Q9	NIPA2_HUMAN	No assigned EC number	0.5061	0.9153	0.6611	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	260
pfam05653	300	pfam05653, Mg_trans_NIPA, Magnesium transporter NI	1e-116

>gnl|CDD|114381 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA

 Score =  334 bits (857), Expect = e-116
 Identities = 156/231 (67%), Positives = 191/231 (82%)

Query: 13  MSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITM 72
           M++DN  GLILA+SSSIFIGSSFI+KKKGL +    G+RAG GGY YL E LWW G++TM
Sbjct: 1   MNTDNYIGLILAVSSSIFIGSSFIIKKKGLLRLARGGMRAGEGGYGYLKEWLWWAGLLTM 60

Query: 73  VVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132
           +VGE ANFAAYAFAPA LVTPLGALS+IISA L+   L E+L++FG LGC+LC+VGST I
Sbjct: 61  IVGEAANFAAYAFAPATLVTPLGALSVIISAVLSSFFLNEKLNLFGKLGCVLCIVGSTVI 120

Query: 133 VLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCS 192
           V+HAP E+EIESV EVWNLAT+P FL+Y  LV+  V ILIF   P++GQT+I+VYI +CS
Sbjct: 121 VIHAPKEQEIESVREVWNLATDPGFLVYVILVVGVVLILIFFVEPRHGQTNILVYITICS 180

Query: 193 LVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLN 243
           L+GSL+VMSVKA+GIA+KLT SG NQL YPQ W F ++V+ CV+TQ+NYLN
Sbjct: 181 LIGSLTVMSVKALGIAIKLTFSGKNQLGYPQFWIFLVVVVTCVVTQINYLN 231

NIPA (nonimprinted in Prader-Willi/Angelman syndrome) is a family of integral membrane proteins which function as magnesium transporters. Length = 300

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	260
KOG2922	335	consensus Uncharacterized conserved protein [Funct	100.0
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	100.0
COG2510	140	Predicted membrane protein [Function unknown]	99.16
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.8
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	98.6
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.6
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.42
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.42
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.11
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.94
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.92
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.91
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.88
PLN00411	358	nodulin MtN21 family protein; Provisional	97.81
PRK11689	295	aromatic amino acid exporter; Provisional	97.78
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.73
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.7
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.62
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.62
PRK15430	296	putative chloramphenical resistance permease RarD;	97.58
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.56
PRK11272	292	putative DMT superfamily transporter inner membran	97.55
PRK11689	295	aromatic amino acid exporter; Provisional	97.54
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.49
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.18
PRK11272	292	putative DMT superfamily transporter inner membran	97.15
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.06
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.03
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.96
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.93
PRK15430	296	putative chloramphenical resistance permease RarD;	96.89
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	96.86
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	96.79
PRK11431	105	multidrug efflux system protein; Provisional	96.69
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.65
PRK10532	293	threonine and homoserine efflux system; Provisiona	96.52
COG2076	106	EmrE Membrane transporters of cations and cationic	96.26
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.24
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	96.18
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.12
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	96.05
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	95.94
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	95.79
KOG3912	372	consensus Predicted integral membrane protein [Gen	95.77
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	95.62
PLN00411	358	nodulin MtN21 family protein; Provisional	95.24
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	94.95
KOG2765	416	consensus Predicted membrane protein [Function unk	94.94
PRK13499	345	rhamnose-proton symporter; Provisional	93.53
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	92.68
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	92.62
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	92.42
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	91.98
COG1742	109	Uncharacterized conserved protein [Function unknow	91.74
COG2962	293	RarD Predicted permeases [General function predict	91.42
KOG4831	125	consensus Unnamed protein [Function unknown]	88.59
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	88.47
KOG2765	416	consensus Predicted membrane protein [Function unk	87.34
PRK02237	109	hypothetical protein; Provisional	85.56
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	81.57
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	80.22

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=4.4e-61  Score=434.41  Aligned_cols=248  Identities=70%  Similarity=1.163  Sum_probs=239.2

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccccCCccccccchhHHHHHHHHHHHHHHHHHHHhhccchhh
Q 024970           12 GMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILV   91 (260)
Q Consensus        12 ~~~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~~lV   91 (260)
                      +|++++++|+.+|+.|+++++.++++|||+++|....+.|++++..+|++.|+||.|+++|++|+++||+||+|||++||
T Consensus        14 ~~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLV   93 (335)
T KOG2922|consen   14 RMSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLV   93 (335)
T ss_pred             hhccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhh
Confidence            67999999999999999999999999999999887767788888899999999999999999999999999999999999


Q ss_pred             hcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCccccCCHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 024970           92 TPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFIL  171 (260)
Q Consensus        92 ~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~~~~~t~~~l~~~~~~~~f~~y~~~~~v~~~~l  171 (260)
                      +|||++|+++|+++|+++||||++..+.+||++|++|++++|.|+|+|++..|++|+++++++|+|++|+.+.+++.+++
T Consensus        94 tPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~~~il  173 (335)
T KOG2922|consen   94 TPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILIVLIL  173 (335)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHhheeccCccceeEeeeeecchhhhHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 024970          172 IFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMPISSL  251 (260)
Q Consensus       172 ~~~~~~r~g~~~~l~y~~i~gl~g~~tvl~~K~~~~~l~~t~~g~~~~~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~~~~  251 (260)
                      +++..||+|++|+++|+++|+++|++||+++|+++.+++++++|+||+.+|+||+++++++.|+++|++|||||||+||+
T Consensus       174 ~~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fnt  253 (335)
T KOG2922|consen  174 IFFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNT  253 (335)
T ss_pred             heeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             c---eeeeeee
Q 024970          252 F---YLFLVFI  259 (260)
Q Consensus       252 ~---~~~~~~~  259 (260)
                      .   |+++++|
T Consensus       254 slV~PiyyV~f  264 (335)
T KOG2922|consen  254 SIVSPIYYVMF  264 (335)
T ss_pred             hhcchhHHHHH
Confidence            4   6666665

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=100.00  E-value=5.8e-58  Score=419.72  Aligned_cols=247  Identities=45%  Similarity=0.792  Sum_probs=233.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccccCCccccccchhHHHHHHHHHHHHHHHHHHHhhccchhhh
Q 024970           13 MSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVT   92 (260)
Q Consensus        13 ~~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~~lV~   92 (260)
                      |.+++++|+.+|++||++++.|+++|||+++|+++++.|.+.+.++|+|||+||.|+.+|++|+++|++||+|+|+++||
T Consensus         1 ~~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~   80 (300)
T PF05653_consen    1 MNTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVA   80 (300)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHH
Confidence            46789999999999999999999999999988887555554566799999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCccccCCHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 024970           93 PLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILI  172 (260)
Q Consensus        93 Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~~~~~t~~~l~~~~~~~~f~~y~~~~~v~~~~l~  172 (260)
                      |+|++++++|+++|++++|||++++|+.|+++++.|+++++.++|++++.+|++|+++++++|+|+.|+.+..+..++++
T Consensus        81 Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~  160 (300)
T PF05653_consen   81 PLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILI  160 (300)
T ss_pred             HHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988877787


Q ss_pred             HhheeccCccceeEeeeeecchhhhHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 024970          173 FHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMVMPISSLF  252 (260)
Q Consensus       173 ~~~~~r~g~~~~l~y~~i~gl~g~~tvl~~K~~~~~l~~t~~g~~~~~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~~~~~  252 (260)
                      ++..||+|++++++|.++||++|++|++++|++++.++++++|+|||.+|.+|+++++++.|++.|++||||||++||++
T Consensus       161 ~~~~~r~g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~  240 (300)
T PF05653_consen  161 FFIKPRYGRRNILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTS  240 (300)
T ss_pred             HhhcchhcccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999985


Q ss_pred             ---eeeeeee
Q 024970          253 ---YLFLVFI  259 (260)
Q Consensus       253 ---~~~~~~~  259 (260)
                         |+++|||
T Consensus       241 ~V~P~~~v~~  250 (300)
T PF05653_consen  241 LVVPVYYVFF  250 (300)
T ss_pred             EEEeehhHHH
Confidence               7777776

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.16  E-value=1.5e-10  Score=93.22  Aligned_cols=112  Identities=26%  Similarity=0.349  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhccC---Ccccc-------------C--CccccccchhHH----HHHHHHHHHHHH
Q 024970           21 LILALSSSIFIGSSFIVKKKGLKKAGAS---GVRAG-------------F--GGYSYLYEPLWW----VGMITMVVGEIA   78 (260)
Q Consensus        21 v~lAl~sa~~~a~g~vlqk~~~~~~~~~---~~~~~-------------~--~~~~~l~~~~W~----~G~~~~~~g~~~   78 (260)
                      ...|++||++.+++.++-|-|.+..+.+   -.|+-             .  +...-...+.|.    .| +.-.+|+.+
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSG-la~glswl~   83 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSG-LAGGLSWLL   83 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHH-HHHHHHHHH
Confidence            4789999999999999999998765432   13330             0  011112333343    45 445789999


Q ss_pred             HHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeE
Q 024970           79 NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV  133 (260)
Q Consensus        79 ~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv  133 (260)
                      .|.|+.-++++.|+|+...|+++..+++..++|||++..+|+|+.|+++|++++.
T Consensus        84 Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          84 YFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            9999999999999999999999999999999999999999999999999998764

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.80  E-value=3.3e-08  Score=80.40  Aligned_cols=116  Identities=17%  Similarity=0.181  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccccC-Cccccccch--hHHHHHHHHHHHHHHHHHHHhhccchhhhcch
Q 024970           19 KGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGF-GGYSYLYEP--LWWVGMITMVVGEIANFAAYAFAPAILVTPLG   95 (260)
Q Consensus        19 igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~-~~~~~l~~~--~W~~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~   95 (260)
                      +|.++.+.+.++.+.|..+-|+|+++.++.+..... .......+|  .-+.|+..++++..++..++...|++...|+-
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~   81 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL   81 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            367788899999999999999998886643211100 011223456  55689999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHH--HhccccccchhHHHHHHhhhheeeEe
Q 024970           96 ALSIIISAALAHI--ILRERLHIFGILGCILCVVGSTTIVL  134 (260)
Q Consensus        96 ~~~lv~~~~la~~--~l~e~~~~~~~~G~~li~~G~~lvv~  134 (260)
                      +...++..+.+..  ++||+++.+++.|+.++++|+.++..
T Consensus        82 sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~  122 (129)
T PRK02971         82 SLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL  122 (129)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            9988888888885  79999999999999999999988643

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=98.60  E-value=9.7e-08  Score=75.88  Aligned_cols=106  Identities=18%  Similarity=0.179  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHhhhhhhccCCcc--ccCCccccccchhHHHHHHHHHHHHHHHHHHHhhccchhhhcch-hHHHHHHHH
Q 024970           28 SIFIGSSFIVKKKGLKKAGASGVR--AGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLG-ALSIIISAA  104 (260)
Q Consensus        28 a~~~a~g~vlqk~~~~~~~~~~~~--~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~-~~~lv~~~~  104 (260)
                      +++.+.+.-+.|||.+..++....  ...+....+++|+.+.++++...|++..+..++-+|.|+..|+. +++.+++++
T Consensus         5 g~~WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l   84 (113)
T PF10639_consen    5 GILWGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTAL   84 (113)
T ss_pred             hHHhcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHH
Confidence            456677778889986654432111  11234468899999999999999999999999999999999996 999999999


Q ss_pred             HHHHHhccccccchhHHHHHHhhhheeeE
Q 024970          105 LAHIILRERLHIFGILGCILCVVGSTTIV  133 (260)
Q Consensus       105 la~~~l~e~~~~~~~~G~~li~~G~~lvv  133 (260)
                      .+.++-+|..+++.+.|+.+++.|+.+.+
T Consensus        85 ~g~~lge~~~~~~~~~G~~Li~~Gv~Lcv  113 (113)
T PF10639_consen   85 TGWLLGEEVISRRTWLGMALILAGVALCV  113 (113)
T ss_pred             HHHHhcCcccchhHHHHHHHHHcCeeeeC
Confidence            99777666667788999999999997753

Many members are annotated as potential transmembrane proteins.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.60  E-value=4.2e-07  Score=72.00  Aligned_cols=101  Identities=11%  Similarity=0.161  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccCCccccCCccccccchhHHHHH--HHHHHHHHHHHHHHhhccchhhhcchhHHHH
Q 024970           23 LALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGM--ITMVVGEIANFAAYAFAPAILVTPLGALSII  100 (260)
Q Consensus        23 lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~l~~~~W~~G~--~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv  100 (260)
                      +-+.+.++...|.+..|++.+..+.+  +       ...++..+.+.  ..+.++..+...++...|.+...|+-+++.+
T Consensus         5 ~l~~ai~~ev~g~~~lK~s~~~~~~~--~-------~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v   75 (111)
T PRK15051          5 TLVFASLLSVAGQLCQKQATRPVAIG--K-------RRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFV   75 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCcc--h-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence            34566777788888999874432211  0       11123445544  5577888999999999999999999999999


Q ss_pred             HHHHHHHHHhccccccchhHHHHHHhhhheee
Q 024970          101 ISAALAHIILRERLHIFGILGCILCVVGSTTI  132 (260)
Q Consensus       101 ~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv  132 (260)
                      ++.+++.+++|||++.+++.|+.++++|++++
T Consensus        76 ~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i  107 (111)
T PRK15051         76 WVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL  107 (111)
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998754

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.42  E-value=1.1e-06  Score=69.16  Aligned_cols=69  Identities=29%  Similarity=0.410  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecC
Q 024970           68 GMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAP  137 (260)
Q Consensus        68 G~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p  137 (260)
                      |......+..+.+.|+.+.| ..++|+.+++.+++.+++..++|||++++++.|+.++.+|++++...+.
T Consensus        41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            44455578899999999999 6999999999999999999999999999999999999999987765443

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.42  E-value=1.7e-05  Score=71.70  Aligned_cols=114  Identities=21%  Similarity=0.205  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhccC-Cccc--c----------CCcccccc--chhHH----HHHHHHHHHHHHHHH
Q 024970           21 LILALSSSIFIGSSFIVKKKGLKKAGAS-GVRA--G----------FGGYSYLY--EPLWW----VGMITMVVGEIANFA   81 (260)
Q Consensus        21 v~lAl~sa~~~a~g~vlqk~~~~~~~~~-~~~~--~----------~~~~~~l~--~~~W~----~G~~~~~~g~~~~~~   81 (260)
                      ..+.+.++++.|....+.|++.++++.- ....  .          .......+  ++.||    .+......+..+.+.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQ   82 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            4678889999999999999765442210 0000  0          00001111  22222    233345566788889


Q ss_pred             HHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEe
Q 024970           82 AYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL  134 (260)
Q Consensus        82 Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~  134 (260)
                      ++...|.+..+|+...+.++..+++..++|||+++++|.|..++..|+.++..
T Consensus        83 a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        83 AYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999987653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.11  E-value=1.5e-05  Score=72.57  Aligned_cols=125  Identities=16%  Similarity=0.135  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCc---cc-----------cCCccccccchh----HHHHHHHHHHHHHH
Q 024970           17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGASGV---RA-----------GFGGYSYLYEPL----WWVGMITMVVGEIA   78 (260)
Q Consensus        17 ~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~---~~-----------~~~~~~~l~~~~----W~~G~~~~~~g~~~   78 (260)
                      ...|.++++.++++.+...++.||..++.+....   ..           ..+.........    .+.|+...++++.+
T Consensus       146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l  225 (293)
T PRK10532        146 DLTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL  225 (293)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3579999999999999999988875433221100   00           001101111122    35666667788889


Q ss_pred             HHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCccc
Q 024970           79 NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAERE  141 (260)
Q Consensus        79 ~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~~~  141 (260)
                      +..++...|.+.++++..+..+++.+++.+++||+++..+++|.++++.|+.......++|++
T Consensus       226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~  288 (293)
T PRK10532        226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPK  288 (293)
T ss_pred             HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            999999999999999999999999999999999999999999999999999877665555444

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.94  E-value=0.0001  Score=65.09  Aligned_cols=114  Identities=20%  Similarity=0.232  Sum_probs=87.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC--c---cc------------cCCccccccchhHH----HHHHHHHH
Q 024970           16 DNIKGLILALSSSIFIGSSFIVKKKGLKKAGASG--V---RA------------GFGGYSYLYEPLWW----VGMITMVV   74 (260)
Q Consensus        16 ~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~--~---~~------------~~~~~~~l~~~~W~----~G~~~~~~   74 (260)
                      ....|..+++.++++.+...+.+|+..++.+.+.  .   +.            ..+.......+.|.    .|.....+
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTAL  204 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHH
Confidence            3467999999999999999999999764433211  0   00            01111111223342    34444567


Q ss_pred             HHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhh
Q 024970           75 GEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGS  129 (260)
Q Consensus        75 g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~  129 (260)
                      ++.+++.++...|++.++.+..+..+++.+++..++||+++..++.|+.+++.|+
T Consensus       205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            8899999999999999999999999999999999999999999999999999986

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.92  E-value=0.00033  Score=61.76  Aligned_cols=68  Identities=19%  Similarity=0.220  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEe
Q 024970           67 VGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL  134 (260)
Q Consensus        67 ~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~  134 (260)
                      .|.....++..+.+.|+.+.|.+..+++.....+++.+++..++|||++++++.|+.+.+.|+.++..
T Consensus        52 ~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        52 LGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            55566678888999999999999999999999999999999999999999999999999999988653

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.91  E-value=0.00048  Score=62.82  Aligned_cols=113  Identities=22%  Similarity=0.257  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccC---CccccC---Cccccc-cchhH---H--HHHHHHHHHHHHHHHHHhh-ccc
Q 024970           22 ILALSSSIFIGSSFIVKKKGLKKAGAS---GVRAGF---GGYSYL-YEPLW---W--VGMITMVVGEIANFAAYAF-APA   88 (260)
Q Consensus        22 ~lAl~sa~~~a~g~vlqk~~~~~~~~~---~~~~~~---~~~~~l-~~~~W---~--~G~~~~~~g~~~~~~Al~~-ap~   88 (260)
                      .+++.++++.+......|....+.+..   ..|-.-   ...... +++.+   +  .|+........+.+.++.. .|.
T Consensus         7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a   86 (299)
T PRK11453          7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPA   86 (299)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            457788889999999999876543321   122100   000111 11111   1  2333323333455667766 477


Q ss_pred             hhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEe
Q 024970           89 ILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL  134 (260)
Q Consensus        89 ~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~  134 (260)
                      ...+-+.....++..+++++++|||++++++.|+++..+|+.++..
T Consensus        87 ~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~  132 (299)
T PRK11453         87 GLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE  132 (299)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence            7777788888899999999999999999999999999999977663

>TIGR00688 rarD rarD protein

Probab=97.88  E-value=0.00057  Score=60.70  Aligned_cols=62  Identities=16%  Similarity=0.208  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeE
Q 024970           72 MVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV  133 (260)
Q Consensus        72 ~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv  133 (260)
                      +..+..+.+.|+...|.+-.+-+....-++..+++++++|||+++++|.|+.+..+|+++++
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999997654

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.81  E-value=0.00011  Score=69.52  Aligned_cols=125  Identities=18%  Similarity=0.214  Sum_probs=88.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc----------------cCC---cccccc-chhHHHHHHH----
Q 024970           16 DNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRA----------------GFG---GYSYLY-EPLWWVGMIT----   71 (260)
Q Consensus        16 ~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~----------------~~~---~~~~l~-~~~W~~G~~~----   71 (260)
                      ++.+|.++++.|+++.+...++||+-.++.+.....+                ..+   ...... -..+...++.    
T Consensus       186 ~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~  265 (358)
T PLN00411        186 DWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII  265 (358)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH
Confidence            4578999999999999999999998655432210000                000   000000 0111112221    


Q ss_pred             HHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCcc
Q 024970           72 MVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAER  140 (260)
Q Consensus        72 ~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~~  140 (260)
                      ..+++.++..+....+++.++...-+..+++++++..++||+++..+++|+++++.|+.+......+|+
T Consensus       266 t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~  334 (358)
T PLN00411        266 TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEE  334 (358)
T ss_pred             HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            234667788888999999999999999999999999999999999999999999999988665444443

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.78  E-value=0.0042  Score=56.56  Aligned_cols=115  Identities=16%  Similarity=0.144  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhccC---Ccccc--------CCccccccc---hhHHHHHHHHHHHHHHHHHHHhhc
Q 024970           21 LILALSSSIFIGSSFIVKKKGLKKAGAS---GVRAG--------FGGYSYLYE---PLWWVGMITMVVGEIANFAAYAFA   86 (260)
Q Consensus        21 v~lAl~sa~~~a~g~vlqk~~~~~~~~~---~~~~~--------~~~~~~l~~---~~W~~G~~~~~~g~~~~~~Al~~a   86 (260)
                      .+.++.+.++.+..+...|.+....+.-   ..|-.        -..++..|+   +....|.+.+.....+.+.++.++
T Consensus         6 ~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~   85 (295)
T PRK11689          6 TLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGYA   85 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            4567778888888888888766553321   01110        000111121   112233333334445555666543


Q ss_pred             ----cchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEee
Q 024970           87 ----PAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLH  135 (260)
Q Consensus        87 ----p~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~  135 (260)
                          |.+..+-+.....++..++++.++|||++++++.|+++..+|+.++...
T Consensus        86 ~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         86 NTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             hccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence                4455566677889999999999999999999999999999999877643

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.73  E-value=0.00032  Score=56.46  Aligned_cols=75  Identities=15%  Similarity=0.146  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchhhhcc-hhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCc
Q 024970           65 WWVGMITMVVGEIANFAAYAFAPAILVTPL-GALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE  139 (260)
Q Consensus        65 W~~G~~~~~~g~~~~~~Al~~ap~~lV~Pl-~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~  139 (260)
                      |+..+.++.++..+-..|+...|.++.-|+ .+++.+...+.+.+++||+++..++.|+.+++.|++.+=..+++.
T Consensus        33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~~  108 (120)
T PRK10452         33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRKA  108 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Confidence            556677778888999999999999999999 579999999999999999999999999999999998775555433

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.70  E-value=0.00038  Score=55.11  Aligned_cols=77  Identities=17%  Similarity=0.181  Sum_probs=64.8

Q ss_pred             cchhHH-HHHHHHHHHHHHHHHHHhhccchhhhcc-hhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecC
Q 024970           61 YEPLWW-VGMITMVVGEIANFAAYAFAPAILVTPL-GALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAP  137 (260)
Q Consensus        61 ~~~~W~-~G~~~~~~g~~~~~~Al~~ap~~lV~Pl-~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p  137 (260)
                      +++.|. ..+..+.++..+-..|+..-|.++.-|+ .+++.+.+.+.+.++.||+++..++.|..+++.|++++=..++
T Consensus        28 ~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~  106 (110)
T PRK09541         28 TRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR  106 (110)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            345543 4555577788888889999999999999 7799999999999999999999999999999999988755443

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.62  E-value=0.0002  Score=64.68  Aligned_cols=113  Identities=19%  Similarity=0.161  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhccC-Cc-c-c------c-C---------Ccccc-ccchhHH----HHHHHHHH
Q 024970           19 KGLILALSSSIFIGSSFIVKKKGLKKAGAS-GV-R-A------G-F---------GGYSY-LYEPLWW----VGMITMVV   74 (260)
Q Consensus        19 igv~lAl~sa~~~a~g~vlqk~~~~~~~~~-~~-~-~------~-~---------~~~~~-l~~~~W~----~G~~~~~~   74 (260)
                      -|..+++.++++.+.+.++.|+..++.+.. .. . .      . .         +.... ...+.|+    .+.....+
T Consensus       144 ~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l  223 (281)
T TIGR03340       144 KAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGG  223 (281)
T ss_pred             hHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence            466788999999999988888753322211 00 0 0      0 0         00000 0111222    33344567


Q ss_pred             HHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhhee
Q 024970           75 GEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT  131 (260)
Q Consensus        75 g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~l  131 (260)
                      ++.+++.++...|++.++++.-++.+++.+++.+++||+++..++.|..+++.|+.+
T Consensus       224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       224 AYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            888999999999999999999999999999999999999999999999999999865

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.62  E-value=5.3e-05  Score=58.58  Aligned_cols=66  Identities=29%  Similarity=0.428  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheee
Q 024970           67 VGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI  132 (260)
Q Consensus        67 ~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv  132 (260)
                      .|.....++..+...++...|.+.++++..++.+++.+++..++||+++++++.|+.+++.|+.++
T Consensus        59 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   59 LGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             hhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            455545788899999999999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.58  E-value=0.00017  Score=65.84  Aligned_cols=119  Identities=17%  Similarity=0.086  Sum_probs=88.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC---cccc------------CCc-cc---cccchhHH----HHHH
Q 024970           14 SSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASG---VRAG------------FGG-YS---YLYEPLWW----VGMI   70 (260)
Q Consensus        14 ~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~---~~~~------------~~~-~~---~l~~~~W~----~G~~   70 (260)
                      |++...|..+.+.++++.+...+.-|.. .+.+...   .|..            ..+ ..   ..++++++    .|..
T Consensus         3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (296)
T PRK15430          3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV   81 (296)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence            4567789999999999999998888753 2211100   1110            000 00   11123322    4555


Q ss_pred             HHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeE
Q 024970           71 TMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV  133 (260)
Q Consensus        71 ~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv  133 (260)
                      ...++..+.+.++...|.+..+-+....-++..+++.+++|||+++++|.|+++...|+++++
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            567788999999999999999999999999999999999999999999999999999998764

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.56  E-value=0.00069  Score=61.79  Aligned_cols=116  Identities=22%  Similarity=0.246  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc---c---------------CCccc------cccchh-HH----HH
Q 024970           18 IKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRA---G---------------FGGYS------YLYEPL-WW----VG   68 (260)
Q Consensus        18 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~---~---------------~~~~~------~l~~~~-W~----~G   68 (260)
                      ..|..+++.++++.+...+++|+-.++.+....-.   .               .+...      .-.++. |+    .|
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            57999999999999999999998533221100000   0               00000      001222 33    34


Q ss_pred             HHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeE
Q 024970           69 MITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV  133 (260)
Q Consensus        69 ~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv  133 (260)
                      +...++++.+++.++.-.+..-++++..+..+++.+++.+++||+++..+++|.+++++|+.+..
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHh
Confidence            44456777888888888899999999999999999999999999999999999999999987543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.55  E-value=0.00046  Score=62.72  Aligned_cols=118  Identities=14%  Similarity=0.046  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC--ccc-------------cCCccccccc-hhHH----HHHHHHHHHH
Q 024970           17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGASG--VRA-------------GFGGYSYLYE-PLWW----VGMITMVVGE   76 (260)
Q Consensus        17 ~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~--~~~-------------~~~~~~~l~~-~~W~----~G~~~~~~g~   76 (260)
                      ...|..+++.++++.|.+.+.+||..++.+...  ...             ..+......+ ..|+    .|....++++
T Consensus       148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~  227 (292)
T PRK11272        148 NPWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI  227 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999999999988532211000  000             0000011111 2343    3444456778


Q ss_pred             HHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEe
Q 024970           77 IANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL  134 (260)
Q Consensus        77 ~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~  134 (260)
                      .+...++...|.+.+..+..+..+++.+++..++||+++..++.|+.+++.|+.+...
T Consensus       228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999976533

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.54  E-value=0.00036  Score=63.58  Aligned_cols=114  Identities=17%  Similarity=0.056  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc------------cCCccc-cccchhHH----HHHHHHHHHHHHHH
Q 024970           18 IKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRA------------GFGGYS-YLYEPLWW----VGMITMVVGEIANF   80 (260)
Q Consensus        18 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~------------~~~~~~-~l~~~~W~----~G~~~~~~g~~~~~   80 (260)
                      ..|..+++.++++.|.+.++.||-.++.+......            -.+... ......|.    .|+ ..++++.++.
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~t~~~~~l~~  233 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAA-AMGFGYAAWN  233 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHH-HHHHHHHHHH
Confidence            46999999999999999999998543321100000            000001 11112232    232 2456788899


Q ss_pred             HHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheee
Q 024970           81 AAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI  132 (260)
Q Consensus        81 ~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv  132 (260)
                      .++...|++.++++.-+..+++.+++..++||+++..+++|.++++.|+.+.
T Consensus       234 ~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~  285 (295)
T PRK11689        234 VGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC  285 (295)
T ss_pred             HHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence            9999999999999999999999999999999999999999999999998665

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.49  E-value=0.0015  Score=61.29  Aligned_cols=78  Identities=27%  Similarity=0.448  Sum_probs=66.3

Q ss_pred             cccchhHHH-HH-HHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeec
Q 024970           59 YLYEPLWWV-GM-ITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHA  136 (260)
Q Consensus        59 ~l~~~~W~~-G~-~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~  136 (260)
                      .+++|.|.- -+ ++++.+......||.+.+.+-+|=|...+++++++++.+++|||.++.+++|+.+|++|+++++...
T Consensus        74 ~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD  153 (334)
T PF06027_consen   74 VLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD  153 (334)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence            345555542 22 3467788889999999999999999999999999999999999999999999999999998877654

Some of the sequences in this family are annotated as putative membrane proteins.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.18  E-value=0.0016  Score=58.45  Aligned_cols=73  Identities=19%  Similarity=0.272  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCc
Q 024970           67 VGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE  139 (260)
Q Consensus        67 ~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~  139 (260)
                      +=.+++.+.+.+.+.++...+.+.-|=+...-++++++++.+++|+|+++++|.+..+.++|++++-..+..+
T Consensus        22 vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   22 VPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            3346789999999999999999999999999999999999999999999999999999999998876655443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.15  E-value=0.0071  Score=54.94  Aligned_cols=66  Identities=15%  Similarity=0.218  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHH-hhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeE
Q 024970           67 VGMITMVVGEIANFAAY-AFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV  133 (260)
Q Consensus        67 ~G~~~~~~g~~~~~~Al-~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv  133 (260)
                      .|......+..+.+.+. ...|....+-+-....++..+++.+ +|||++++++.|..+..+|+.++.
T Consensus        74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~  140 (292)
T PRK11272         74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN  140 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence            44444445566667777 8888888888889999999999975 699999999999999999987654

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.06  E-value=0.0047  Score=54.42  Aligned_cols=117  Identities=24%  Similarity=0.288  Sum_probs=85.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-cc------c--------cCCccccccchhHH----HHHHHHHHHHH
Q 024970           17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGASG-VR------A--------GFGGYSYLYEPLWW----VGMITMVVGEI   77 (260)
Q Consensus        17 ~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~-~~------~--------~~~~~~~l~~~~W~----~G~~~~~~g~~   77 (260)
                      ...|..+++.++++.+...+.+|+-. +.+... ..      .        ..+.........|.    .|.....++..
T Consensus       152 ~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~  230 (292)
T COG0697         152 SLLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYL  230 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999754 211110 10      0        00000001111122    34444456788


Q ss_pred             HHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEe
Q 024970           78 ANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL  134 (260)
Q Consensus        78 ~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~  134 (260)
                      +.+.++...|...++|+.....+++..++..+++|+++..++.|+.+++.|+.+...
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~  287 (292)
T COG0697         231 LWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL  287 (292)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence            899999999999999999999999999999999999999999999999999876543

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.03  E-value=0.0043  Score=47.41  Aligned_cols=65  Identities=14%  Similarity=0.008  Sum_probs=36.7

Q ss_pred             cchhHHHHHH-HHHHHHHHHHHHHhhccchhhhcc-hhHHHHHHHHHHHHHhccccccchhHHHHHH
Q 024970           61 YEPLWWVGMI-TMVVGEIANFAAYAFAPAILVTPL-GALSIIISAALAHIILRERLHIFGILGCILC  125 (260)
Q Consensus        61 ~~~~W~~G~~-~~~~g~~~~~~Al~~ap~~lV~Pl-~~~~lv~~~~la~~~l~e~~~~~~~~G~~li  125 (260)
                      +++.|..+.+ .+.++..+-..|+...|.++.-|+ .+++.+...+.+..+.||+++..++.|+.++
T Consensus        27 ~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   27 TQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             -------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            3455555544 567788888899999999999997 5699999999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.96  E-value=0.018  Score=52.62  Aligned_cols=77  Identities=14%  Similarity=0.131  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCcccc
Q 024970           65 WWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREI  142 (260)
Q Consensus        65 W~~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~~~~  142 (260)
                      +..+ .+..++..++-.|+.+.|.+.-+=+-+..++++++++.+++|+|.+++++.+++++++|+.+......++++.
T Consensus        68 ~~~~-~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~  144 (303)
T PF08449_consen   68 AILS-FLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSS  144 (303)
T ss_pred             HHHH-HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccc
Confidence            3344 4456777888899999999999999999999999999999999999999999999999999988877655543

; GO: 0055085 transmembrane transport

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.93  E-value=0.016  Score=45.84  Aligned_cols=72  Identities=18%  Similarity=0.172  Sum_probs=57.9

Q ss_pred             cchhHHHHHHH-HHHHHHHHHHHHhhccchhhhcch-hHHHHHHHHHHHHHhccccccchhHHHHHHhhhheee
Q 024970           61 YEPLWWVGMIT-MVVGEIANFAAYAFAPAILVTPLG-ALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI  132 (260)
Q Consensus        61 ~~~~W~~G~~~-~~~g~~~~~~Al~~ap~~lV~Pl~-~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv  132 (260)
                      ++|.|...+.. +.++..+--.|+..-|..+.-|+= +++.+...+.+.++.||+++..++.|..+++.|++.+
T Consensus        33 ~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         33 RRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            45666555433 455666667778888999888875 4899999999999999999999999999999998754

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=96.89  E-value=0.0044  Score=56.46  Aligned_cols=62  Identities=13%  Similarity=-0.034  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEe
Q 024970           73 VVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL  134 (260)
Q Consensus        73 ~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~  134 (260)
                      .+++.+.+.++...|++.++++.-+..+++.+++..+++|+++..++.|+++++.|+.++..
T Consensus       224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999998876544

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=96.86  E-value=0.0052  Score=55.94  Aligned_cols=65  Identities=14%  Similarity=0.191  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheee
Q 024970           67 VGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI  132 (260)
Q Consensus        67 ~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv  132 (260)
                      .|+. +.+...++..++.+.+.+..+-+-+.+.+++.+++.+++|||++++++.|..+.++|+.+.
T Consensus        71 ~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~  135 (302)
T TIGR00817        71 VAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA  135 (302)
T ss_pred             HHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence            5555 4677789999999999999999999999999999999999999999999999999999753

specificities overlap.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=96.79  E-value=0.0092  Score=54.53  Aligned_cols=75  Identities=16%  Similarity=0.345  Sum_probs=67.0

Q ss_pred             chhHHHHHHH---HHHHHHHHHHHHhhccchhhhcchh-HHHHHHHHHHHHHhccccccch----hHHHHHHhhhheeeE
Q 024970           62 EPLWWVGMIT---MVVGEIANFAAYAFAPAILVTPLGA-LSIIISAALAHIILRERLHIFG----ILGCILCVVGSTTIV  133 (260)
Q Consensus        62 ~~~W~~G~~~---~~~g~~~~~~Al~~ap~~lV~Pl~~-~~lv~~~~la~~~l~e~~~~~~----~~G~~li~~G~~lvv  133 (260)
                      ...|..|++.   ...|+++.+.|.....+++-.|+.. ...+++.+++.+++||+.++++    ..|.++++.|+.++.
T Consensus        56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~  135 (290)
T TIGR00776        56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS  135 (290)
T ss_pred             cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence            3456667776   8899999999999999999999999 9999999999999999999999    899999999988876


Q ss_pred             eec
Q 024970          134 LHA  136 (260)
Q Consensus       134 ~~~  136 (260)
                      ...
T Consensus       136 ~~~  138 (290)
T TIGR00776       136 RSK  138 (290)
T ss_pred             ecc
Confidence            554

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.69  E-value=0.021  Score=44.88  Aligned_cols=72  Identities=15%  Similarity=0.014  Sum_probs=58.0

Q ss_pred             cchhHHHHH-HHHHHHHHHHHHHHhhccchhhhcchh-HHHHHHHHHHHHHhccccccchhHHHHHHhhhheee
Q 024970           61 YEPLWWVGM-ITMVVGEIANFAAYAFAPAILVTPLGA-LSIIISAALAHIILRERLHIFGILGCILCVVGSTTI  132 (260)
Q Consensus        61 ~~~~W~~G~-~~~~~g~~~~~~Al~~ap~~lV~Pl~~-~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv  132 (260)
                      +++.|...+ ..+.++..+-..|+..-|.++.-++=+ ++.+...+.+.++.||+++..++.|+.+++.|++.+
T Consensus        27 ~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         27 SRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            345554443 445666667777788889988877754 999999999999999999999999999999999765

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.65  E-value=0.012  Score=51.86  Aligned_cols=74  Identities=24%  Similarity=0.386  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHH-HHhccccccchhHHHHHHhhhheeeEeecCCcc
Q 024970           67 VGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAH-IILRERLHIFGILGCILCVVGSTTIVLHAPAER  140 (260)
Q Consensus        67 ~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~-~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~~  140 (260)
                      .|......+..+.+.++...|....+++...+.++..+++. +++|||++++++.|..+...|+.++...+..+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~  149 (292)
T COG0697          75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG  149 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch
Confidence            55555677889999999999999999999999999999997 777999999999999999999887766555443

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=96.52  E-value=0.091  Score=47.76  Aligned_cols=112  Identities=14%  Similarity=0.058  Sum_probs=71.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC---Ccccc----------CCccccccchhH----HHHHHHHHHHHHH
Q 024970           16 DNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS---GVRAG----------FGGYSYLYEPLW----WVGMITMVVGEIA   78 (260)
Q Consensus        16 ~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~---~~~~~----------~~~~~~l~~~~W----~~G~~~~~~g~~~   78 (260)
                      +...|+.+.+++.++.+.+.++.|.+..+.+..   ..|..          ..++...+++.|    +.|.. +.....+
T Consensus         9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~   87 (293)
T PRK10532          9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYL   87 (293)
T ss_pred             ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHH
Confidence            347788999999999999999999876653321   11210          000111223333    45553 4566677


Q ss_pred             HHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEe
Q 024970           79 NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL  134 (260)
Q Consensus        79 ~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~  134 (260)
                      .+.++...|.+...-+.....++..+++    +||.+  ++.+..+..+|+.+++.
T Consensus        88 ~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--~~~~~~i~~~Gv~li~~  137 (293)
T PRK10532         88 FYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--DFVWVVLAVLGLWFLLP  137 (293)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--HHHHHHHHHHHHheeee
Confidence            8888898898877666666666666655    35443  45667778889877664

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.26  E-value=0.039  Score=43.45  Aligned_cols=72  Identities=15%  Similarity=0.120  Sum_probs=58.0

Q ss_pred             cchhHHHHHH-HHHHHHHHHHHHHhhccchhhhcc-hhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheee
Q 024970           61 YEPLWWVGMI-TMVVGEIANFAAYAFAPAILVTPL-GALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI  132 (260)
Q Consensus        61 ~~~~W~~G~~-~~~~g~~~~~~Al~~ap~~lV~Pl-~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv  132 (260)
                      +|+.|...+. .+++++.+-..|+..-|..+--++ .+++.+...+.+..++||+++..+++|..++++|++.+
T Consensus        28 ~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L  101 (106)
T COG2076          28 TRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL  101 (106)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence            3455555444 356677777778888888887765 67999999999999999999999999999999998754

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.24  E-value=0.0035  Score=56.99  Aligned_cols=115  Identities=22%  Similarity=0.325  Sum_probs=70.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC-C-ccccCC------ccccccc--------hhHH--HHHHHHHHHHHH
Q 024970           17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGAS-G-VRAGFG------GYSYLYE--------PLWW--VGMITMVVGEIA   78 (260)
Q Consensus        17 ~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~-~-~~~~~~------~~~~l~~--------~~W~--~G~~~~~~g~~~   78 (260)
                      ..+|+.+..+| .+.+...++-++.....+.+ + .|-...      -.-|.+.        +.|+  -|.... .|-.+
T Consensus        36 p~~gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~-tgvml  113 (346)
T KOG4510|consen   36 PNLGLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGF-TGVML  113 (346)
T ss_pred             CccCceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhh-hHHHH
Confidence            55888899999 77777777777765544432 1 110000      0011111        1232  122211 22334


Q ss_pred             HHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeE
Q 024970           79 NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV  133 (260)
Q Consensus        79 ~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv  133 (260)
                      .+-||.+.|.+=-.-+.-.+-+++.++|..+||||.|+.|.+|+.....|+++++
T Consensus       114 myya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv  168 (346)
T KOG4510|consen  114 MYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV  168 (346)
T ss_pred             HHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence            4445554444433334567788999999999999999999999999999999986

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=96.18  E-value=0.021  Score=53.62  Aligned_cols=59  Identities=15%  Similarity=0.215  Sum_probs=54.9

Q ss_pred             HHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeE
Q 024970           75 GEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV  133 (260)
Q Consensus        75 g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv  133 (260)
                      +..+...|+...+++..+=+-+.+.+++++++++++|||++++.+.+++++++|+.+..
T Consensus       127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            45566799999999999999999999999999999999999999999999999998865

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.12  E-value=0.088  Score=49.48  Aligned_cols=138  Identities=24%  Similarity=0.277  Sum_probs=85.1

Q ss_pred             CCCCCCccccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-cc-cc-------------CCccccccchhHH
Q 024970            2 ADPNGHSWRDGMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASG-VR-AG-------------FGGYSYLYEPLWW   66 (260)
Q Consensus         2 ~~~~~~~~~~~~~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~-~~-~~-------------~~~~~~l~~~~W~   66 (260)
                      +|-.+|+-. ...++..+|-++++.||.+.|+..++|++-.++.+... .. -+             -|+ .-+++-.|=
T Consensus       152 sD~~~~~~~-~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~-~~i~~~~w~  229 (334)
T PF06027_consen  152 SDVLSGSDS-SSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILER-SGIESIHWT  229 (334)
T ss_pred             ecccccccC-CCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheeh-hhhhccCCC
Confidence            454444433 34567899999999999999999999999766533210 00 00             011 111111121


Q ss_pred             HHHHHHHHHH-HHHHHHHhhccchh------hhcch-hHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCC
Q 024970           67 VGMITMVVGE-IANFAAYAFAPAIL------VTPLG-ALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA  138 (260)
Q Consensus        67 ~G~~~~~~g~-~~~~~Al~~ap~~l------V~Pl~-~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~  138 (260)
                      .......+|+ ++.+.-|...|..+      +--++ ..+-++++++..++.|++++..-++|-++++.|.++.....++
T Consensus       230 ~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~  309 (334)
T PF06027_consen  230 SQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESP  309 (334)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCc
Confidence            1112222222 45555555555433      12222 3456888999999999999999999999999999887776665


Q ss_pred             ccc
Q 024970          139 ERE  141 (260)
Q Consensus       139 ~~~  141 (260)
                      +++
T Consensus       310 ~~~  312 (334)
T PF06027_consen  310 EEE  312 (334)
T ss_pred             ccc
Confidence            554

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=96.05  E-value=0.024  Score=51.83  Aligned_cols=115  Identities=23%  Similarity=0.169  Sum_probs=83.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC--ccc-----cC----Ccc---ccccchhHH----HHHHHHHHHHHH
Q 024970           17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGASG--VRA-----GF----GGY---SYLYEPLWW----VGMITMVVGEIA   78 (260)
Q Consensus        17 ~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~--~~~-----~~----~~~---~~l~~~~W~----~G~~~~~~g~~~   78 (260)
                      ...|+..++.|+++.+.-...-|+.. ..+.+.  +..     ++    ...   +....+.+|    .|+. ..+++.+
T Consensus       150 ~~~Gi~~~l~sg~~y~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~~ia~~~  227 (290)
T TIGR00776       150 FKKGILLLLMSTIGYLVYVVVAKAFG-VDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLM-WGIGNFF  227 (290)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcC-CCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHHH
Confidence            35699999999999988888777531 111100  000     00    000   111222333    4555 4678888


Q ss_pred             HHHHHh-hccchhhhcchhHHHHHHHHHHHHHhccccccchh----HHHHHHhhhheeeE
Q 024970           79 NFAAYA-FAPAILVTPLGALSIIISAALAHIILRERLHIFGI----LGCILCVVGSTTIV  133 (260)
Q Consensus        79 ~~~Al~-~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~----~G~~li~~G~~lvv  133 (260)
                      .+.+.. ..+.+.-.++.....+.+.+.+.+++||+.+++++    +|+++++.|+.++.
T Consensus       228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            888889 99999999999999999999999999999999999    99999999987653

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=95.94  E-value=0.32  Score=44.37  Aligned_cols=80  Identities=13%  Similarity=0.264  Sum_probs=67.2

Q ss_pred             hhHHHHHHH---HHHHHHHHHHHHhhccchhhhcch-hHHHHHHHHHHHHHhccccccchh----HHHHHHhhhheeeEe
Q 024970           63 PLWWVGMIT---MVVGEIANFAAYAFAPAILVTPLG-ALSIIISAALAHIILRERLHIFGI----LGCILCVVGSTTIVL  134 (260)
Q Consensus        63 ~~W~~G~~~---~~~g~~~~~~Al~~ap~~lV~Pl~-~~~lv~~~~la~~~l~e~~~~~~~----~G~~li~~G~~lvv~  134 (260)
                      ..|+.+++.   -.+|+++|+.|+.....|.-.|++ +..++.|.+.+.+++||--+..++    .+.+++++|+.+-..
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            556766654   478999999999999999999999 799999999999999999888776    478899999987777


Q ss_pred             ecCCcccc
Q 024970          135 HAPAEREI  142 (260)
Q Consensus       135 ~~p~~~~~  142 (260)
                      ..+++++.
T Consensus       123 ~~~~~~~~  130 (269)
T PF06800_consen  123 QDKKSDKS  130 (269)
T ss_pred             cccccccc
Confidence            66665543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=95.79  E-value=0.022  Score=51.77  Aligned_cols=117  Identities=13%  Similarity=0.170  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc-------c----------CCcccccc------------chhHH
Q 024970           16 DNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRA-------G----------FGGYSYLY------------EPLWW   66 (260)
Q Consensus        16 ~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~-------~----------~~~~~~l~------------~~~W~   66 (260)
                      ....|..+++.|+++.++..++.||-.++.+.+..+.       +          .+..+...            ...|.
T Consensus       142 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (302)
T TIGR00817       142 FNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYT  221 (302)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHH
Confidence            3467999999999999999999988654211111110       0          01000000            01121


Q ss_pred             HHHHH----HHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheee
Q 024970           67 VGMIT----MVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI  132 (260)
Q Consensus        67 ~G~~~----~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv  132 (260)
                      .+...    ....+...+.++...+++..+-.+.+.-+++.+++..++||+++..++.|.++++.|+.+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~  291 (302)
T TIGR00817       222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLY  291 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHH
Confidence            12111    1112234456777888888888888889999999999999999999999999999998653

specificities overlap.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=95.77  E-value=0.085  Score=48.51  Aligned_cols=121  Identities=11%  Similarity=0.108  Sum_probs=85.3

Q ss_pred             chhHHHHHHHHHHH-HHHHHHHHHHHhhhhhhccCCccc-cCCccccccchhHHHHHHHHHHHHHHHHHHHhhccchhhh
Q 024970           15 SDNIKGLILALSSS-IFIGSSFIVKKKGLKKAGASGVRA-GFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVT   92 (260)
Q Consensus        15 ~~~~igv~lAl~sa-~~~a~g~vlqk~~~~~~~~~~~~~-~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~~lV~   92 (260)
                      ++.++=.++-.++- .|.++=..++.++..+-.+.+... .++..+.++-.....=.++++.|..+..++|....++--|
T Consensus        37 qhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQ  116 (372)
T KOG3912|consen   37 QHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQ  116 (372)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHhhhHHHHHHHHHhhHHHHH
Confidence            34444445555666 344444455544433322211110 1122234444455556788999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEee
Q 024970           93 PLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLH  135 (260)
Q Consensus        93 Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~  135 (260)
                      -+-+.-++|.-+++..+||++++.++|.|+..+.+|.+.+...
T Consensus       117 MlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen  117 MLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             HhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            9999999999999999999999999999999999999877654

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=95.62  E-value=0.13  Score=41.49  Aligned_cols=112  Identities=24%  Similarity=0.370  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhcc--CCcccc--------------------CCccc-------ccc-----chh-
Q 024970           20 GLILALSSSIFIGSSFIVKKKGLKKAGA--SGVRAG--------------------FGGYS-------YLY-----EPL-   64 (260)
Q Consensus        20 gv~lAl~sa~~~a~g~vlqk~~~~~~~~--~~~~~~--------------------~~~~~-------~l~-----~~~-   64 (260)
                      |..+++.|+++.++-.+++|+..++...  +..+..                    .|...       ..+     .+. 
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            5688999999999999999987766411  111100                    01000       111     212 


Q ss_pred             HHHHHHHHH---HHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhhee
Q 024970           65 WWVGMITMV---VGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT  131 (260)
Q Consensus        65 W~~G~~~~~---~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~l  131 (260)
                      |+.-+...+   +-+..++..+...++.--+=++.+--+...+++..+.+|+++..++.|+.+++.|...
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            211111112   3335566667777777777888899999999999999999999999999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=95.24  E-value=0.11  Score=49.13  Aligned_cols=60  Identities=18%  Similarity=0.436  Sum_probs=54.3

Q ss_pred             HHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHH------hccccccchhHHHHHHhhhheeeEe
Q 024970           75 GEIANFAAYAFAPAILVTPLGALSIIISAALAHII------LRERLHIFGILGCILCVVGSTTIVL  134 (260)
Q Consensus        75 g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~------l~e~~~~~~~~G~~li~~G~~lvv~  134 (260)
                      ...+.+.++.+.|.+..+=+.....++..++++++      +|||++++++.|++++.+|+.+++.
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~  156 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF  156 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            34568889999999999999999999999999999      6999999999999999999976654

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=94.95  E-value=0.27  Score=44.62  Aligned_cols=123  Identities=19%  Similarity=0.164  Sum_probs=89.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc---c-------------CCccccccchhHH-HHHHH----HH
Q 024970           15 SDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRA---G-------------FGGYSYLYEPLWW-VGMIT----MV   73 (260)
Q Consensus        15 ~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~---~-------------~~~~~~l~~~~W~-~G~~~----~~   73 (260)
                      +-.-.|+.+|+.+..|.+.=.+.-||.-+..+  +.+.   +             ....+-+.+|.-. .++..    -+
T Consensus       144 ~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~--g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSa  221 (292)
T COG5006         144 SLDPVGVALALGAGACWALYIVLGQRAGRAEH--GTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSA  221 (292)
T ss_pred             cCCHHHHHHHHHHhHHHHHHHHHcchhcccCC--CchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcc
Confidence            34568999999999999988888887543211  1111   0             1112334444433 33333    34


Q ss_pred             HHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCc
Q 024970           74 VGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE  139 (260)
Q Consensus        74 ~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~  139 (260)
                      +=+.+..+|+.-.|...-.-+.++.-.+..+....+|||++|..||.|+.+++.++.....-..++
T Consensus       222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~  287 (292)
T COG5006         222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP  287 (292)
T ss_pred             cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence            445789999999999999999999999999999999999999999999999999987655544433

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=94.94  E-value=0.074  Score=50.47  Aligned_cols=83  Identities=19%  Similarity=0.246  Sum_probs=66.5

Q ss_pred             HHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCcccc-----CCHHHHHHHhcC
Q 024970           80 FAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREI-----ESVIEVWNLATE  154 (260)
Q Consensus        80 ~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~~~~-----~t~~~l~~~~~~  154 (260)
                      =+||++..++-.+=+.+.|=+|++.++.++.+||+|....+++++.+.|++++...+.++.++     ....+++.++..
T Consensus       177 naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~llaL~sA  256 (416)
T KOG2765|consen  177 NAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGNLLALLSA  256 (416)
T ss_pred             HHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHHHHHHHHH
Confidence            368999999999999999999999999999999999999999999999999988876644332     244566666655


Q ss_pred             hhHHHHHH
Q 024970          155 PAFLLYAA  162 (260)
Q Consensus       155 ~~f~~y~~  162 (260)
                      -.+.+|..
T Consensus       257 ~~YavY~v  264 (416)
T KOG2765|consen  257 LLYAVYTV  264 (416)
T ss_pred             HHHHHHHH
Confidence            44555543

>PRK13499 rhamnose-proton symporter; Provisional

Probab=93.53  E-value=0.14  Score=48.41  Aligned_cols=127  Identities=17%  Similarity=0.142  Sum_probs=85.7

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-ccc-----------------cCCcccccc---chhHHHHHHH
Q 024970           13 MSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASG-VRA-----------------GFGGYSYLY---EPLWWVGMIT   71 (260)
Q Consensus        13 ~~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~-~~~-----------------~~~~~~~l~---~~~W~~G~~~   71 (260)
                      |+.+..+|++..+++.+|.+.=.+=+|| .+.=+=|. ...                 ..+..++++   ...|..+++.
T Consensus         1 m~~~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~   79 (345)
T PRK13499          1 MSNAIILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF   79 (345)
T ss_pred             CCchhHHHHHHHHHHHHHhhcccccccc-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence            3456778888888888888777777777 22111000 000                 011222333   2445555543


Q ss_pred             ---HHHHHHHHHHHHhhccchhhhcchh-HHHHHHHHHHHHHhcccc---ccc----hhHHHHHHhhhheeeEeecCCcc
Q 024970           72 ---MVVGEIANFAAYAFAPAILVTPLGA-LSIIISAALAHIILRERL---HIF----GILGCILCVVGSTTIVLHAPAER  140 (260)
Q Consensus        72 ---~~~g~~~~~~Al~~ap~~lV~Pl~~-~~lv~~~~la~~~l~e~~---~~~----~~~G~~li~~G~~lvv~~~p~~~  140 (260)
                         -.+|++.++.+......|+-.|++. ++++.+.++...+.+|=-   +..    ...|++++++|+.+....+.+.+
T Consensus        80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~  159 (345)
T PRK13499         80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE  159 (345)
T ss_pred             HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence               4789999999999999999999985 899999999999998633   333    35799999999988777444333

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=92.68  E-value=0.54  Score=44.29  Aligned_cols=77  Identities=17%  Similarity=0.177  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCccc
Q 024970           65 WWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAERE  141 (260)
Q Consensus        65 W~~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~~~  141 (260)
                      |-+=.+++.+-+-.++++++..|++.=+....+-++.++++...+|+||+++++|...++..+|+.++=+..+++.+
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~  171 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTG  171 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence            33444677887779999999999999999999999999999999999999999999999999999887654444443

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=92.62  E-value=0.87  Score=41.58  Aligned_cols=120  Identities=22%  Similarity=0.157  Sum_probs=74.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc-----------------c---CCccc----cccchhHHH
Q 024970           12 GMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRA-----------------G---FGGYS----YLYEPLWWV   67 (260)
Q Consensus        12 ~~~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~-----------------~---~~~~~----~l~~~~W~~   67 (260)
                      ....+...|+.+.+.+-++.|...+.|++-.++.+.+..+.                 .   .+..+    ..+.|..+.
T Consensus       147 ~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~  226 (303)
T PF08449_consen  147 SSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLL  226 (303)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHH
Confidence            33334445999999999999999999999766544322111                 0   00011    112343332


Q ss_pred             HHHH-HHHHHHHHH---HHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhhee
Q 024970           68 GMIT-MVVGEIANF---AAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT  131 (260)
Q Consensus        68 G~~~-~~~g~~~~~---~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~l  131 (260)
                      -+++ ...+.+++.   .-...-.....+-...+--..+.+++..+.+++++..+|.|.+++..|..+
T Consensus       227 ~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~  294 (303)
T PF08449_consen  227 YLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFL  294 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence            2222 233333333   222333444444555566678899999999999999999999999999764

; GO: 0055085 transmembrane transport

>TIGR00803 nst UDP-galactose transporter

Probab=92.42  E-value=0.76  Score=39.84  Aligned_cols=117  Identities=20%  Similarity=0.187  Sum_probs=80.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC-Cccc------------------cCC---ccccc-c-chhHHHHHH
Q 024970           15 SDNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS-GVRA------------------GFG---GYSYL-Y-EPLWWVGMI   70 (260)
Q Consensus        15 ~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~-~~~~------------------~~~---~~~~l-~-~~~W~~G~~   70 (260)
                      .+...|+...+.+.++.+...+.|+++.++.+.. ..+.                  ..+   ..+.. . .+.+|.-.+
T Consensus        81 g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (222)
T TIGR00803        81 GNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGL  160 (222)
T ss_pred             ccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHH
Confidence            3566777777777777788889998875542110 0000                  000   01111 1 222333334


Q ss_pred             HHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhhee
Q 024970           71 TMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT  131 (260)
Q Consensus        71 ~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~l  131 (260)
                      +...|..+-...+.+++.....=...+..+++.+++.++.+|+++...|.|+.++..|+.+
T Consensus       161 ~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       161 LNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            4566777777778888888999999999999999999999999999999999999998653

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=91.98  E-value=1.3  Score=41.45  Aligned_cols=50  Identities=14%  Similarity=0.292  Sum_probs=39.9

Q ss_pred             HHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhhee
Q 024970           82 AYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT  131 (260)
Q Consensus        82 Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~l  131 (260)
                      .+.-.++.--+=.+.+.-++..+++..++||+++..+++|+++++.|+.+
T Consensus       296 ~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l  345 (350)
T PTZ00343        296 CLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL  345 (350)
T ss_pred             HHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence            44445555555555667788899999999999999999999999999864

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=91.74  E-value=0.7  Score=36.25  Aligned_cols=66  Identities=20%  Similarity=0.387  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHh-hccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCc
Q 024970           71 TMVVGEIANFAAYA-FAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE  139 (260)
Q Consensus        71 ~~~~g~~~~~~Al~-~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~  139 (260)
                      +.+.|.+.++..-. ++.  .-+.-|++=+..++......-|.+.++.||.|...|.+|+ .++.++|..
T Consensus        42 L~lf~~llT~~~~~a~GR--vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~-~vil~~pR~  108 (109)
T COG1742          42 LALFGWLLTLQPAAAFGR--VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGV-AVILFGPRG  108 (109)
T ss_pred             HHHHHHHHHcCCchhhhh--HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhce-eeeEeCCCC
Confidence            34455555432222 221  3356678888899999999999999999999999999994 455666643

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=91.42  E-value=0.55  Score=43.22  Aligned_cols=118  Identities=19%  Similarity=0.146  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-C--Ccc----------------ccCCccccccchhHHHHHHHHHHHHHH
Q 024970           18 IKGLILALSSSIFIGSSFIVKKKGLKKAGA-S--GVR----------------AGFGGYSYLYEPLWWVGMITMVVGEIA   78 (260)
Q Consensus        18 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~-~--~~~----------------~~~~~~~~l~~~~W~~G~~~~~~g~~~   78 (260)
                      --|+++++.+.+..+.--..-|.- +..+. |  ..|                ...+.++..|+|+=+....+..+=...
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~   84 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKLL-EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGL   84 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            347888888888876654443331 00000 0  011                011223456677655554443333345


Q ss_pred             HHHHHhhccch---hhhcchh-HHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeec
Q 024970           79 NFAAYAFAPAI---LVTPLGA-LSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHA  136 (260)
Q Consensus        79 ~~~Al~~ap~~---lV~Pl~~-~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~  136 (260)
                      |..-+-.+|-.   +=+.+|= +--++|.+++..++|||+++.+|+++.+..+|+....+..
T Consensus        85 nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~  146 (293)
T COG2962          85 NWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL  146 (293)
T ss_pred             HHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            55555555543   3334443 3446889999999999999999999999999997655433

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=88.59  E-value=1.2  Score=35.27  Aligned_cols=77  Identities=18%  Similarity=0.257  Sum_probs=62.4

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHhhccchhhhcch-hHHHHHHHHHHHHHhccccc-cchhHHHHHHhhhheeeE
Q 024970           56 GYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLG-ALSIIISAALAHIILRERLH-IFGILGCILCVVGSTTIV  133 (260)
Q Consensus        56 ~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~-~~~lv~~~~la~~~l~e~~~-~~~~~G~~li~~G~~lvv  133 (260)
                      .+..+.+...|+=+++--.|+...+.-++-+|.++-.|+. +++..|+.++...+ ||+.. ++-..|+.++++|+.+.+
T Consensus        46 ~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   46 MKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             HHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccceeehhhhHHhhhhhhee
Confidence            3456667778888888888999999999999999999986 57888999888765 66665 455789999999987654

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=88.47  E-value=0.95  Score=41.35  Aligned_cols=60  Identities=22%  Similarity=0.276  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchh----HHHHHHhhhhee
Q 024970           72 MVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGI----LGCILCVVGSTT  131 (260)
Q Consensus        72 ~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~----~G~~li~~G~~l  131 (260)
                      ..+|+++.+.|-.-.-+..=-|++.++++.+.+-+-+++||+=+++|+    .|+++++.|.++
T Consensus       205 w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  205 WGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            467888888888877888888999999999999999999999998885    588889888764

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=87.34  E-value=3.3  Score=39.64  Aligned_cols=132  Identities=19%  Similarity=0.223  Sum_probs=85.0

Q ss_pred             CCccccCC--cchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC-Cccc-----------------------cCCcccc
Q 024970            6 GHSWRDGM--SSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS-GVRA-----------------------GFGGYSY   59 (260)
Q Consensus         6 ~~~~~~~~--~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~-~~~~-----------------------~~~~~~~   59 (260)
                      +++|+.+.  .++..+|-++|+.||++.|+=.++-||...+++++ +..-                       +.++.+.
T Consensus       232 ~~s~~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~l  311 (416)
T KOG2765|consen  232 GDSKQNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFEL  311 (416)
T ss_pred             ccccccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccC
Confidence            44555444  44569999999999999999999999865555322 2110                       0111111


Q ss_pred             ccchh----HHHHHHHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEee
Q 024970           60 LYEPL----WWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLH  135 (260)
Q Consensus        60 l~~~~----W~~G~~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~  135 (260)
                      -.++.    -..|.+.-+++..++..|.......+++-=..+++..+++.=..+-+.+.+...++|.+.+.+|-+++-..
T Consensus       312 P~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~  391 (416)
T KOG2765|consen  312 PSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNIS  391 (416)
T ss_pred             CCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecc
Confidence            11111    12444445566667777766666555554455777777776666668899999999999999998766554


Q ss_pred             cC
Q 024970          136 AP  137 (260)
Q Consensus       136 ~p  137 (260)
                      ..
T Consensus       392 ~~  393 (416)
T KOG2765|consen  392 SE  393 (416)
T ss_pred             cc
Confidence            43

>PRK02237 hypothetical protein; Provisional

Probab=85.56  E-value=3.7  Score=32.45  Aligned_cols=47  Identities=21%  Similarity=0.359  Sum_probs=38.9

Q ss_pred             hhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCC
Q 024970           91 VTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA  138 (260)
Q Consensus        91 V~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~  138 (260)
                      -+.-|++=++.+++.....-|+|.++.|++|..+|.+|+.++. ++|.
T Consensus        62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~-~~pR  108 (109)
T PRK02237         62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM-YAPR  108 (109)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe-ecCC
Confidence            3456778888899999999999999999999999999986543 5553

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=81.57  E-value=3.1  Score=38.35  Aligned_cols=80  Identities=15%  Similarity=0.208  Sum_probs=63.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhc-cchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHHHhhhheeeEeecCCccc
Q 024970           63 PLWWVGMITMVVGEIANFAAYAFA-PAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAERE  141 (260)
Q Consensus        63 ~~W~~G~~~~~~g~~~~~~Al~~a-p~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~p~~~~  141 (260)
                      +.|..=..++-.-+..|=.|+.|. |..+=-=+-+-+++.|+++...++|+|-+.+++..++++.+|+++.-.++.++..
T Consensus        65 k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~  144 (330)
T KOG1583|consen   65 KDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGR  144 (330)
T ss_pred             hhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchh
Confidence            346555555556667777788776 5444445678899999999999999999999999999999999998888776654


Q ss_pred             c
Q 024970          142 I  142 (260)
Q Consensus       142 ~  142 (260)
                      .
T Consensus       145 ~  145 (330)
T KOG1583|consen  145 S  145 (330)
T ss_pred             h
Confidence            3

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=80.22  E-value=20  Score=32.01  Aligned_cols=111  Identities=20%  Similarity=0.326  Sum_probs=69.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC-Cccc-------------------cC--CccccccchhHH--HHH
Q 024970           14 SSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS-GVRA-------------------GF--GGYSYLYEPLWW--VGM   69 (260)
Q Consensus        14 ~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~-~~~~-------------------~~--~~~~~l~~~~W~--~G~   69 (260)
                      ..+..+|+.+.++++++-+++.+...|-+++.+.+ ..|.                   +.  .....++.-.|+  .=+
T Consensus       109 ~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i  188 (244)
T PF04142_consen  109 NQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVI  188 (244)
T ss_pred             cchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHH
Confidence            56678999999999999999998888877664321 0111                   00  011222222222  222


Q ss_pred             HHHHHHHHHHHHHHhhccchhhhcchhHHHHHHHHHHHHHhccccccchhHHHHH
Q 024970           70 ITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCIL  124 (260)
Q Consensus        70 ~~~~~g~~~~~~Al~~ap~~lV~Pl~~~~lv~~~~la~~~l~e~~~~~~~~G~~l  124 (260)
                      .+..+|-+.-...+.++.-.+=.=-.+++++.+.+++..+.+.+++..-.+|+.+
T Consensus       189 ~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~  243 (244)
T PF04142_consen  189 FLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL  243 (244)
T ss_pred             HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence            2334455555555666665544445568889999999999999999887777654

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	260
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.77
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.67

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.77  E-value=4.6e-08  Score=76.10  Aligned_cols=100  Identities=16%  Similarity=0.113  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccCCccccCCccccccchhHHHHHHHHHHHHHHHHHHHhhccchhhhcc-hhHHHH
Q 024970           22 ILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPL-GALSII  100 (260)
Q Consensus        22 ~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~~lV~Pl-~~~~lv  100 (260)
                      ++-+.+.++.+.+....|++.      +         ..|.+.++.+...+.++..+...|+...|.+.+.|+ .+++.+
T Consensus         5 l~l~~a~~~e~~~~~~lK~s~------~---------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v   69 (110)
T 3b5d_A            5 IYLGGAILAEVIGTTLMKFSE------G---------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV   69 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc------C---------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHH
Confidence            345667788888988888851      1         112344567778888999999999999999999999 899999


Q ss_pred             HHHHHHHHHhccccccchhHHHHHHhhhheeeEeec
Q 024970          101 ISAALAHIILRERLHIFGILGCILCVVGSTTIVLHA  136 (260)
Q Consensus       101 ~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~  136 (260)
                      ++.+++.+++||+++..++.|+.+++.|++++-..+
T Consensus        70 ~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999998775543

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.67  E-value=2.7e-08  Score=80.59  Aligned_cols=100  Identities=15%  Similarity=0.088  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccCCccccCCccccccchhHHHHHHHHHHHHHHHHHHHhhccchhhhcc-hhHHHH
Q 024970           22 ILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPL-GALSII  100 (260)
Q Consensus        22 ~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~~lV~Pl-~~~~lv  100 (260)
                      ++-+++.++.+.|..+.|++..               ..+.+.++.|.+..++++.+...++...|++...|+ .+++.+
T Consensus         5 l~Ll~ail~ev~~~~~lK~s~g---------------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv   69 (137)
T 2i68_A            5 IYLGGAILAEVIGTTLMKFSEG---------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV   69 (137)
T ss_dssp             HHHHHHHHHHHHHHHHC---------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc---------------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Confidence            3456677888889899888520               112344568888899999999999999999999999 899999


Q ss_pred             HHHHHHHHHhccccccchhHHHHHHhhhheeeEeec
Q 024970          101 ISAALAHIILRERLHIFGILGCILCVVGSTTIVLHA  136 (260)
Q Consensus       101 ~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~  136 (260)
                      ++.+++.+++||+++..+++|++++++|++++-..+
T Consensus        70 ~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999998875543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00