Citrus Sinensis ID: 024973

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MFMASTVSPQSPYSLFLKTQHGSLQQLTKEPRAATARTRSKILRVFASQKAGSNKSQRRAQPGVDTRIHWENEDEGWIGGSSSSSHQTNQNFNAEEEQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAASRKAEKLKMKFEDPYDQALKNYGSIPDMVDRLGGRNMELSDQAMTALTFDVVVIIFTFCCIIYALYFKEPYY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHcccccEEEEEEEHHHEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccEccccccccccccccHcccccccccccEEEcccccHHHHHHHHHcccccccccccccccccccEEEEccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccEEEEEEEEEEEEEEEEEccccc
Coil and Loop (DISEMBL)
mfmastvspqspyslFLKTQhgslqqltkepraaTARTRSKILRVFAsqkagsnksqrraqpgvdtrihwenedegwiggssssshqtnqnFNAEEEQKNLLGEKFADLlnnssdshyqflgispsadLEEIKSAYRRLSkeyhpdttslplKAASEKFLKLREVYDVLsneesrrfYDWTLAQEAASRKAEKLKmkfedpydqalknygsipdmvdrlggrnmelsdQAMTALTFDVVVIIFTFCCIIYAlyfkepyy
Flexible Loop (DISEMBL)
mfmastvspqspYSLFLKTQHgslqqltkepraatartRSKILRvfasqkagsnksqrraqpgvdtrihWENEDEGWIGGSSSSSHQTNQNFNAEEEQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSkeyhpdttslplkaaSEKFLKLREVYDVlsneesrrfydWTLAQEAASRKAEKLKMKFEDPYDQALKNYGSIPDMVDRLGGRNMELSDQAMTALTFDVVVIIFTFCCIIYALYFKEPYY
Low Complexity Region (SEG)
MFMASTVSPQSPYSLFLKTQHGSLQQLTKEPRAATARTRSKILRVFASQKAGSNKSQRRAQPGVDTRIHWENEDEGWIGGSSSSSHQTNQNFNAEEEQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAASRKAEKLKMKFEDPYDQALKNYGSIPDMVDRLGGRNMELSDQAMTALtfdvvviiftfcciiYALYFKEPYY
Disordered region (IsUnstruct)
*********************************************************************************************************************YQFLGI*********************************EKFLKLREVYDVLSNEESRRFYDWTLAQ********************ALKNYGSIPDMVDRLGGRNMELSDQAMTALTFDVVVIIFTFCCIIYALYFK****
Disordered Region (DISOPRED)
*************SLFLKTQHGS****************************************************G********************************LLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWT*********************DQALKNYGSIP**********************FDVVVIIFTFCCIIYALYFKE***
Disordered Region (DISEMBL)
**********SPYSLFLKTQHG***************TRSKILRVFAS***************VDTRIHWENEDEGWIG***************EEEQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAASRKAEKLKMKFEDPYDQALKNYGSIPDMVDRLGGRNMELSDQAMTALTFDVVVIIFTFCCIIYALYFKEPYY
Disordered Region (DISPRO)
*************SL******GSLQQLTKEPRAATARTRSKILRVFAS*************PGVDTRIHWENED**W*************************GEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAAS************PYDQALKNYGSIPDMVDRLGGRN*********ALTFDVVVIIFTFCCIIYALYFKEP*Y
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFMASTVSPQSPYSLFLKTQHGSLQQLTKEPRAATARTRSKILRVFASQKAGSNKSQRRAQPGVDTRIHWENEDEGWIGGSSSSSHQTNQNFNAEEEQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAASRKAEKLKMKFEDPYDQALKNYGSIPDMVDRLGGRNMELSDQAMTALTFDVVVIIFTFCCIIYALYFKEPYY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q75VW3	356	Chaperone protein DnaJ OS	yes	no	0.247	0.179	0.545	7e-12
Q45552	380	Chaperone protein DnaJ OS	N/A	no	0.235	0.160	0.507	4e-11
Q5KWZ8	382	Chaperone protein DnaJ OS	yes	no	0.235	0.159	0.507	5e-11
C5D4U0	380	Chaperone protein DnaJ OS	yes	no	0.235	0.160	0.507	6e-11
Q9KWS6	380	Chaperone protein DnaJ OS	yes	no	0.235	0.160	0.507	6e-11
A4IR30	381	Chaperone protein DnaJ OS	yes	no	0.235	0.160	0.507	7e-11
Q03QU2	382	Chaperone protein DnaJ OS	yes	no	0.262	0.178	0.442	1e-10
O27352	376	Chaperone protein DnaJ OS	yes	no	0.374	0.257	0.386	2e-10
Q8DKR7	373	Chaperone protein DnaJ OS	no	no	0.231	0.160	0.5	2e-10
B3QPW8	401	Chaperone protein DnaJ OS	yes	no	0.239	0.154	0.523	2e-10

>sp|Q75VW3|DNAJ_HYDTT Chaperone protein DnaJ OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) GN=dnaJ PE=3 SV=1

 Score = 71.2 bits (173), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 47/66 (71%), Gaps = 2/66 (3%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +YQ LG+S  A  EEIK AYRRL+KEYHPD ++   + ASEKF ++ E Y +LS+EE R+
Sbjct: 6   YYQILGVSKDATAEEIKKAYRRLAKEYHPDISA--DENASEKFKEINEAYHILSDEERRK 63

Query: 177 FYDWTL 182
            YD  L
Sbjct: 64  EYDRIL 69

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) (taxid: 608538)

>sp|Q45552|DNAJ_GEOSE Chaperone protein DnaJ OS=Geobacillus stearothermophilus GN=dnaJ PE=3 SV=1

 Score = 68.6 bits (166), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 2/63 (3%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+S +A  EEIK AYR+LSK+YHPD    P   A+EKF +++E Y+VLS+++ R 
Sbjct: 6   YYEILGVSKNATKEEIKKAYRKLSKKYHPDVNKEP--DAAEKFKEIKEAYEVLSDDQKRA 63

Query: 177 FYD 179
            YD
Sbjct: 64  HYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Geobacillus stearothermophilus (taxid: 1422)

>sp|Q5KWZ8|DNAJ_GEOKA Chaperone protein DnaJ OS=Geobacillus kaustophilus (strain HTA426) GN=dnaJ PE=3 SV=1

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 2/63 (3%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+S +A  +EIK AYR+LSK+YHPD    P   A+EKF +++E Y+VLS++E R 
Sbjct: 6   YYEILGVSKNATKDEIKKAYRKLSKQYHPDVNKAP--DAAEKFKEIKEAYEVLSDDEKRA 63

Query: 177 FYD 179
            YD
Sbjct: 64  RYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Geobacillus kaustophilus (strain HTA426) (taxid: 235909)

>sp|C5D4U0|DNAJ_GEOSW Chaperone protein DnaJ OS=Geobacillus sp. (strain WCH70) GN=dnaJ PE=3 SV=1

 Score = 68.2 bits (165), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 2/63 (3%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+S +A  EEIK AYR+LSK+YHPD    P   A+EKF +++E Y+VLS+++ R 
Sbjct: 6   YYEILGVSKNATKEEIKKAYRKLSKKYHPDINKEP--DAAEKFKEIKEAYEVLSDDQKRA 63

Query: 177 FYD 179
            YD
Sbjct: 64  HYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Geobacillus sp. (strain WCH70) (taxid: 471223)

>sp|Q9KWS6|DNAJ_BACTR Chaperone protein DnaJ OS=Bacillus thermoglucosidasius GN=dnaJ PE=3 SV=1

 Score = 68.2 bits (165), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 2/63 (3%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+S +A  EEIK AYR+LSK+YHPD    P   A+EKF +++E Y+VLS+++ R 
Sbjct: 6   YYEILGVSKNATKEEIKKAYRKLSKKYHPDINKEP--DAAEKFKEIKEAYEVLSDDQKRA 63

Query: 177 FYD 179
            YD
Sbjct: 64  HYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Bacillus thermoglucosidasius (taxid: 1426)

>sp|A4IR30|DNAJ_GEOTN Chaperone protein DnaJ OS=Geobacillus thermodenitrificans (strain NG80-2) GN=dnaJ PE=3 SV=1

 Score = 67.8 bits (164), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 2/63 (3%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+S +A  +EIK AYR+LSK+YHPD    P   A+EKF +++E Y+VLS++E R 
Sbjct: 6   YYEVLGVSKNATKDEIKKAYRKLSKQYHPDINKAP--DAAEKFKEIKEAYEVLSDDEKRA 63

Query: 177 FYD 179
            YD
Sbjct: 64  RYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Geobacillus thermodenitrificans (strain NG80-2) (taxid: 420246)

>sp|Q03QU2|DNAJ_LACBA Chaperone protein DnaJ OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=dnaJ PE=3 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y  LG++  A  +EIK AYR+LSK+YHPD    P   A+EKF ++++ YDVL +E+ R  
Sbjct: 7   YGVLGVAKDASQDEIKKAYRKLSKKYHPDLNKAP--DAAEKFKEVQDAYDVLGDEQKRAN 64

Query: 178 YDWTLAQEAA 187
           YD + + + A
Sbjct: 65  YDQSGSADGA 74

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Lactobacillus brevis (strain ATCC 367 / JCM 1170) (taxid: 387344)

>sp|O27352|DNAJ_METTH Chaperone protein DnaJ OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=dnaJ PE=3 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 4/101 (3%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+   AD +EIK AYRRL+++YHPD +  P   A+EKF ++ E Y VLS++E R 
Sbjct: 6   YYEILGVDRGADKKEIKKAYRRLARKYHPDVSDDP--DAAEKFKEISEAYAVLSDDEKRA 63

Query: 177 FYD--WTLAQEAASRKAEKLKMKFEDPYDQALKNYGSIPDM 215
            YD       +  S++     + FED +     + G+I DM
Sbjct: 64  RYDRFGHAGMDGFSQEDIFNNINFEDIFSGLGFDIGNIFDM 104

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)

>sp|Q8DKR7|DNAJ_THEEB Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 2/62 (3%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y+ LG+S SAD EE+K AYRRL+++YHPD    P   A EKF ++   Y+VLS+ ++R  
Sbjct: 6   YEILGVSRSADAEELKRAYRRLARKYHPDVNKEP--GAEEKFKEINRAYEVLSDPQARAN 63

Query: 178 YD 179
           YD
Sbjct: 64  YD 65

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|B3QPW8|DNAJ_CHLP8 Chaperone protein DnaJ OS=Chlorobaculum parvum (strain NCIB 8327) GN=dnaJ PE=3 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+S SAD +EIK AYR+L+ +YHPD      K A EKF +  E Y+VLSN++ RR
Sbjct: 5   YYEILGVSRSADKDEIKKAYRKLALKYHPDKNP-DNKEAEEKFKEANEAYEVLSNDDKRR 63

Query: 177 FYD 179
            YD
Sbjct: 64  RYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Chlorobaculum parvum (strain NCIB 8327) (taxid: 517417)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
224135975	256	predicted protein [Populus trichocarpa]	0.969	0.980	0.655	3e-98
449439697	234	PREDICTED: uncharacterized protein LOC10	0.903	1.0	0.626	1e-83
15233838	249	chaperone DnaJ-domain containing protein	0.953	0.991	0.597	2e-82
356542463	252	PREDICTED: uncharacterized protein LOC10	0.764	0.785	0.696	3e-82
225460530	253	PREDICTED: uncharacterized protein LOC10	0.969	0.992	0.675	2e-81
297813365	247	DNAJ heat shock N-terminal domain-contai	0.934	0.979	0.610	5e-81
356526451	246	PREDICTED: curved DNA-binding protein-li	0.733	0.772	0.685	5e-77
357157162	242	PREDICTED: curved DNA-binding protein-li	0.934	1.0	0.539	2e-74
115484729	251	Os11g0216100 [Oryza sativa Japonica Grou	0.722	0.745	0.651	1e-72
388493240	247	unknown [Medicago truncatula]	0.949	0.995	0.606	3e-71

>gi|224135975|ref|XP_002327350.1| predicted protein [Populus trichocarpa] gi|222835720|gb|EEE74155.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (933), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 171/261 (65%), Positives = 217/261 (83%), Gaps = 10/261 (3%)

Query: 3   MASTVSPQSPYSLFLKTQHGSLQQLTKE---PRAATART--RSKILRVFASQKAGSNKSQ 57
           MAST + Q+P+SLFL+TQ+GS  +  K     +A + RT  R +   V+A Q  GS +  
Sbjct: 1   MASTTATQAPFSLFLRTQNGSGHRRKKHLSIRKAPSGRTGNRGRAFGVYAEQ--GSPEKP 58

Query: 58  RRAQPGVDTRIHWENEDEGWIGGSSSSSHQTNQNFNAEEEQKNLLGEKFADLLNNSSDSH 117
           +RA PGVDTRIHW+NEDEGW+GGSS+SS QT Q   AE+EQK++LG++FADLLN+SSDSH
Sbjct: 59  QRAPPGVDTRIHWDNEDEGWVGGSSTSSEQTKQ---AEDEQKDMLGKRFADLLNDSSDSH 115

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           YQFLG+S  AD+EEIK+AYRRLSKEYHPDTTSLPLK+ASEKF++LREVYD+LSN+E R+F
Sbjct: 116 YQFLGVSADADMEEIKTAYRRLSKEYHPDTTSLPLKSASEKFMRLREVYDILSNDEKRKF 175

Query: 178 YDWTLAQEAASRKAEKLKMKFEDPYDQALKNYGSIPDMVDRLGGRNMELSDQAMTALTFD 237
           YDWTLAQEAASR+AE+++M+ EDPY+Q +  Y S+PDMVDRLGGRNM LSDQAM+ALTFD
Sbjct: 176 YDWTLAQEAASRQAEQMRMRLEDPYEQEINRYESVPDMVDRLGGRNMGLSDQAMSALTFD 235

Query: 238 VVVIIFTFCCIIYALYFKEPY 258
           + +I+F+  C+I+ L+FKEPY
Sbjct: 236 IFIILFSIGCLIFVLFFKEPY 256

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439697|ref|XP_004137622.1| PREDICTED: uncharacterized protein LOC101208302 [Cucumis sativus] gi|449503135|ref|XP_004161851.1| PREDICTED: uncharacterized LOC101208302 [Cucumis sativus]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 161/257 (62%), Positives = 187/257 (72%), Gaps = 23/257 (8%)

Query: 3   MASTVSPQSPYSLFLKTQHGSLQQLTKEPRAATARTRSKILRVFASQKAGSNKSQRRAQP 62
           MAS   P S   LF KT H S         A T RT     RV+A+Q    N  +RR  P
Sbjct: 1   MASPPFPNS--LLFHKTFHSS---------APTFRT----WRVYAAQ--APNNDRRRPPP 43

Query: 63  GVDTRIHWENEDEGWIGGSSSSSHQTNQNFNAEEEQKNLLGEKFADLLNNSSDSHYQFLG 122
           GVDTRIHW+NE+EGWIG     S+  N   N      N+LG   ADLLNNSSDSHYQFLG
Sbjct: 44  GVDTRIHWQNEEEGWIGRKKKESNDQNNVSN------NMLGPSLADLLNNSSDSHYQFLG 97

Query: 123 ISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTL 182
           +   A++EEIKSAYRRLSKEYHPDTTSLPLK ASEKF+KL++VY+VLSNEESR+FYDWTL
Sbjct: 98  VDAEAEVEEIKSAYRRLSKEYHPDTTSLPLKVASEKFMKLKQVYEVLSNEESRKFYDWTL 157

Query: 183 AQEAASRKAEKLKMKFEDPYDQALKNYGSIPDMVDRLGGRNMELSDQAMTALTFDVVVII 242
           AQE ASR+A+KL+MK EDPY+Q L+N+ S PDMVDRLGGRN+ELSDQA TALT D+ +I+
Sbjct: 158 AQEEASRQADKLRMKLEDPYEQELQNWVSTPDMVDRLGGRNLELSDQASTALTLDIFIIL 217

Query: 243 FTFCCIIYALYFKEPYY 259
           F   CI+Y L FKEPYY
Sbjct: 218 FAIACIVYVLLFKEPYY 234

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233838|ref|NP_192673.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] gi|5881780|emb|CAB55698.1| putative protein [Arabidopsis thaliana] gi|7267577|emb|CAB78058.1| putative protein [Arabidopsis thaliana] gi|332657344|gb|AEE82744.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 156/261 (59%), Positives = 195/261 (74%), Gaps = 14/261 (5%)

Query: 1   MFMASTVSPQSPYSLFLKTQHGS-LQQLTKEPRAATARTRSKILRVFASQKAGSNKSQRR 59
           M  A++   ++   +  K Q+G+     TK  R  TAR   ++ R++ASQ  G  K  + 
Sbjct: 1   MAYATSTYARTSCIILPKIQNGAHFTDDTKAFRRITAR---RVTRIYASQ--GPTKPSK- 54

Query: 60  AQPGVDTRIHWENEDEGWIGGSSSSSHQTNQNFNAEEEQKNLLG-EKFADLLNNSSDSHY 118
             PGVDTRIHWE+ DEGWIGG S  +       + +E++ NLL  EKFA+L+ +S DSHY
Sbjct: 55  PSPGVDTRIHWESPDEGWIGGRSDPAK------SVDEDKTNLLSDEKFAELIKDSFDSHY 108

Query: 119 QFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFY 178
           QFLG+S  ADLEEIKSAYRRLSKEYHPDTTSLPLK ASEKF+KLREVY+VLS+EE+RRFY
Sbjct: 109 QFLGVSTDADLEEIKSAYRRLSKEYHPDTTSLPLKTASEKFMKLREVYNVLSDEETRRFY 168

Query: 179 DWTLAQEAASRKAEKLKMKFEDPYDQALKNYGSIPDMVDRLGGRNMELSDQAMTALTFDV 238
           DWTLAQE ASR+AEK++MK EDP +Q  + Y SIPDMVDRLGGRNMELSDQAMTALTFD+
Sbjct: 169 DWTLAQEVASRQAEKMRMKLEDPKEQDFRGYESIPDMVDRLGGRNMELSDQAMTALTFDI 228

Query: 239 VVIIFTFCCIIYALYFKEPYY 259
           ++++F  CCI + + FK+P Y
Sbjct: 229 LIVLFAVCCIAFVIVFKDPSY 249

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542463|ref|XP_003539686.1| PREDICTED: uncharacterized protein LOC100819309 [Glycine max]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 142/204 (69%), Positives = 168/204 (82%), Gaps = 6/204 (2%)

Query: 56  SQRRAQPGVDTRIHWENEDEGWIGGSSSSSHQTNQNFNAEEEQKNLLGEKFADLLNNSSD 115
           S RRA PGVDTRIHWENEDEGWIGG+++   QT++  N       L  + F DLL+ S  
Sbjct: 54  SSRRAPPGVDTRIHWENEDEGWIGGTNTKHQQTHKPNNM------LQADDFPDLLSASLG 107

Query: 116 SHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESR 175
           SHY+FLG+SP ADLEEIK AYR+LSKEYHPDTTSLPLK ASEKF+KLREVY+VLSNEESR
Sbjct: 108 SHYEFLGVSPDADLEEIKVAYRKLSKEYHPDTTSLPLKTASEKFMKLREVYNVLSNEESR 167

Query: 176 RFYDWTLAQEAASRKAEKLKMKFEDPYDQALKNYGSIPDMVDRLGGRNMELSDQAMTALT 235
           +FYDWTLAQE ASR AEK+KMK EDP +Q LKN+  +PDMVDRLGGRNM+LSDQA++A+T
Sbjct: 168 KFYDWTLAQEVASRHAEKMKMKLEDPREQQLKNWEPVPDMVDRLGGRNMKLSDQAVSAIT 227

Query: 236 FDVVVIIFTFCCIIYALYFKEPYY 259
            D+ +I+F  CCIIY ++FKEPYY
Sbjct: 228 IDLFIIVFAICCIIYVIFFKEPYY 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460530|ref|XP_002272533.1| PREDICTED: uncharacterized protein LOC100252905 [Vitis vinifera] gi|147803306|emb|CAN75474.1| hypothetical protein VITISV_002798 [Vitis vinifera] gi|296081011|emb|CBI18515.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 175/259 (67%), Positives = 204/259 (78%), Gaps = 8/259 (3%)

Query: 3   MASTVSPQSPYSLFLKTQHGS--LQQLTKEPRAATARTRSKILRVFASQKAGSNKSQRRA 60
           MAST +P   +SL LKTQ+ +  L+ +T   R   + +      + A+ +   N  QR A
Sbjct: 1   MASTAAPPPSFSLLLKTQNTTNQLRSVTPSRRRRRSSSSQGGFWILAAAQDSKNPRQR-A 59

Query: 61  QPGVDTRIHWENEDEGWIGGSSSSSHQTNQNFNAEEEQKNLLGEKFADLLNNSSDSHYQF 120
            PGVDTRIHW+N DEGWIGGSSS         N EEE+KNLLGE+F+DLL++SSDSHYQF
Sbjct: 60  PPGVDTRIHWDNPDEGWIGGSSSKP-----KLNGEEEEKNLLGEEFSDLLDDSSDSHYQF 114

Query: 121 LGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDW 180
           LGIS  ADLEEIK+AYRRLSKEYHPDTTSLPLKAAS+KFLKLREVYDVL +EE RRFYDW
Sbjct: 115 LGISAQADLEEIKAAYRRLSKEYHPDTTSLPLKAASDKFLKLREVYDVLCDEERRRFYDW 174

Query: 181 TLAQEAASRKAEKLKMKFEDPYDQALKNYGSIPDMVDRLGGRNMELSDQAMTALTFDVVV 240
           TLAQEAASRKAEK+KMK EDPY + ++N+ SIPDMVDRLGGRNMELSDQA+TALTFD+++
Sbjct: 175 TLAQEAASRKAEKMKMKLEDPYQKDVQNWESIPDMVDRLGGRNMELSDQAVTALTFDILI 234

Query: 241 IIFTFCCIIYALYFKEPYY 259
           IIF  CCIIY L FKEP Y
Sbjct: 235 IIFAICCIIYVLVFKEPNY 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813365|ref|XP_002874566.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297320403|gb|EFH50825.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  306 bits (785), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 160/262 (61%), Positives = 195/262 (74%), Gaps = 20/262 (7%)

Query: 3   MASTVSPQSPYSLFL--KTQHGS-LQQLTKEPRAATARTRSKILRV-FASQKAGSNKSQR 58
           MAS  S  +  S  +  K Q+G+  +  T+  R  TAR      RV +ASQ  G  K  +
Sbjct: 1   MASATSTYARTSCIILPKIQNGTHFRDDTRAFRRITAR------RVTYASQ--GPTKPPK 52

Query: 59  RAQPGVDTRIHWENEDEGWIGGSSSSSHQTNQNFNAEEEQKNLLG-EKFADLLNNSSDSH 117
              PGVDTRIHWE+ DEGWIGG S  +       + +E++ NLL  EKFA+L+ +S DSH
Sbjct: 53  -PSPGVDTRIHWESPDEGWIGGRSDPTK------SVDEDKTNLLSDEKFAELIKDSFDSH 105

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           YQFLG+S  ADLEEIKSAYRRLSKEYHPDTTSLPLK AS+KF+KLREVY+VLS+EE+RRF
Sbjct: 106 YQFLGVSTDADLEEIKSAYRRLSKEYHPDTTSLPLKTASDKFMKLREVYNVLSDEETRRF 165

Query: 178 YDWTLAQEAASRKAEKLKMKFEDPYDQALKNYGSIPDMVDRLGGRNMELSDQAMTALTFD 237
           YDWTLAQE ASR+AEK++MK EDP +Q  + Y SIPDMVDRLGGRNMELSDQAMTALTFD
Sbjct: 166 YDWTLAQEVASRQAEKMRMKLEDPKEQDFRGYESIPDMVDRLGGRNMELSDQAMTALTFD 225

Query: 238 VVVIIFTFCCIIYALYFKEPYY 259
           +++I+F  CCI++ L FK+P Y
Sbjct: 226 ILIILFAVCCIVFVLVFKDPSY 247

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526451|ref|XP_003531831.1| PREDICTED: curved DNA-binding protein-like [Glycine max]

 Score =  293 bits (750), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 135/197 (68%), Positives = 161/197 (81%), Gaps = 7/197 (3%)

Query: 64  VDTRIHWENEDEGWIGGSSSSSHQTNQNFNAEEEQKNLL-GEKFADLLNNSSDSHYQFLG 122
           VDTRIHWENEDEGWIG +++   QT++  N      N+L  + F D L  S  SHY+FLG
Sbjct: 55  VDTRIHWENEDEGWIGATNTKHQQTHKPNN------NMLQADDFPDFLTASLGSHYEFLG 108

Query: 123 ISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTL 182
           +SP AD+EEIK AYR+LSKEYHPDTTSLPLK ASEKF+KLREVY+VLSNEESR+FYDWTL
Sbjct: 109 VSPDADVEEIKVAYRKLSKEYHPDTTSLPLKTASEKFMKLREVYNVLSNEESRKFYDWTL 168

Query: 183 AQEAASRKAEKLKMKFEDPYDQALKNYGSIPDMVDRLGGRNMELSDQAMTALTFDVVVII 242
           AQEAASR AEK+KMK EDP  Q LKN+  +PDMVDRLGGRNM+LSDQA++A+T D+ +I+
Sbjct: 169 AQEAASRHAEKMKMKLEDPRQQQLKNWEPVPDMVDRLGGRNMKLSDQAVSAITIDLFIIV 228

Query: 243 FTFCCIIYALYFKEPYY 259
           F  CCIIY ++FKEPYY
Sbjct: 229 FALCCIIYVIFFKEPYY 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357157162|ref|XP_003577706.1| PREDICTED: curved DNA-binding protein-like [Brachypodium distachyon]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 138/256 (53%), Positives = 181/256 (70%), Gaps = 14/256 (5%)

Query: 3   MASTVSPQSPYSLFLKTQHGSLQQLTKEPRAATARTRSKILRVFASQKAGSNKSQRRAQP 62
           MA++ +   P++ FL    G  +  T+    A +   ++     A+   G  K+      
Sbjct: 1   MAASSTASRPFTPFLHRHQGRGRCRTRLVVVAASTPDAEAPSPEAAAAPGKKKT------ 54

Query: 63  GVDTRIHWENEDEGWIGGSSSSSHQTNQNFNAEEEQKNLLGEKFADLLNNSSDSHYQFLG 122
            VDTRIHW N DEGWIGG      ++         +   LG +FADL+N+ ++SHYQFLG
Sbjct: 55  -VDTRIHWSNPDEGWIGGKDIKEGESGS-------KNEPLGRRFADLINDPAESHYQFLG 106

Query: 123 ISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTL 182
           I+P AD+EEIK+AYRRLSKE+HPDTT LPLK+ASEKF+ LREVY+VLS EE+RRFYDWTL
Sbjct: 107 IAPEADIEEIKAAYRRLSKEFHPDTTRLPLKSASEKFIWLREVYNVLSEEETRRFYDWTL 166

Query: 183 AQEAASRKAEKLKMKFEDPYDQALKNYGSIPDMVDRLGGRNMELSDQAMTALTFDVVVII 242
           AQEA SR+ ++L+ + EDPY+Q +++Y  +PDMVDRLGG+NMELSDQAMTAL FD+VVI 
Sbjct: 167 AQEAESRRLQQLRSRLEDPYEQDIQSYEPVPDMVDRLGGKNMELSDQAMTALGFDIVVIF 226

Query: 243 FTFCCIIYALYFKEPY 258
           F+ CCIIYA++FKE Y
Sbjct: 227 FSICCIIYAVFFKEQY 242

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115484729|ref|NP_001067508.1| Os11g0216100 [Oryza sativa Japonica Group] gi|77549263|gb|ABA92060.1| DNAJ heat shock N-terminal domain-containing protein, putative, expressed [Oryza sativa Japonica Group] gi|113644730|dbj|BAF27871.1| Os11g0216100 [Oryza sativa Japonica Group] gi|215765213|dbj|BAG86910.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 127/195 (65%), Positives = 155/195 (79%), Gaps = 8/195 (4%)

Query: 64  VDTRIHWENEDEGWIGGSSSSSHQTNQNFNAEEEQKNLLGEKFADLLNNSSDSHYQFLGI 123
           VDTRIHW + DEGW+GG        N   +    +K  LG +FADL+NN S+SHYQFLG+
Sbjct: 65  VDTRIHWSDPDEGWVGG--------NAKKDGGGRKKEPLGGRFADLINNPSESHYQFLGV 116

Query: 124 SPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLA 183
            P AD+EEIK+AYRRLSKEYHPDTTSLPL+ ASE+F++LRE Y+VLS EESRRFYDWTLA
Sbjct: 117 EPKADIEEIKAAYRRLSKEYHPDTTSLPLREASERFIRLREAYNVLSREESRRFYDWTLA 176

Query: 184 QEAASRKAEKLKMKFEDPYDQALKNYGSIPDMVDRLGGRNMELSDQAMTALTFDVVVIIF 243
           QEA SR+ ++L+ + EDPY Q L +Y S+PDMVDRLGGRNM+LSDQAMTALT D+ +IIF
Sbjct: 177 QEAESRRLQQLRSRLEDPYQQDLDSYQSVPDMVDRLGGRNMDLSDQAMTALTIDIGIIIF 236

Query: 244 TFCCIIYALYFKEPY 258
              C+IYA++FKE Y
Sbjct: 237 CVFCLIYAVFFKEQY 251

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493240|gb|AFK34686.1| unknown [Medicago truncatula]

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 154/254 (60%), Positives = 188/254 (74%), Gaps = 8/254 (3%)

Query: 3   MASTVSPQSPYSLFLKTQHGSLQQLTKEPRAATARTRSKILRVFASQKAGSNKSQRRAQP 62
           MAST +P SP  L      G+ + + +      ART S     F    +  ++  ++A P
Sbjct: 1   MASTATP-SPQILLFNPILGNTKTIRRIRIFRIART-SNSHYSFQVHASKDSQGPQKAPP 58

Query: 63  GVDTRIHWENEDEGWIGGSSSSSHQTNQNFNAEEEQKNLLGEKFADLLNNSSDSHYQFLG 122
           G+DTRIHWEN+DEGWIGGS+       Q  NAEE+ K LLGE FADLLN    SHY+FLG
Sbjct: 59  GIDTRIHWENDDEGWIGGSTK-----QQQTNAEEKPKKLLGEDFADLLNFQG-SHYEFLG 112

Query: 123 ISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTL 182
           ISP AD+E IK A+R+LSKEYHPDTTSLPLK ASEKF+KL+EVY VLSNEESRRFYDWTL
Sbjct: 113 ISPEADVEAIKMAFRKLSKEYHPDTTSLPLKTASEKFMKLKEVYTVLSNEESRRFYDWTL 172

Query: 183 AQEAASRKAEKLKMKFEDPYDQALKNYGSIPDMVDRLGGRNMELSDQAMTALTFDVVVII 242
           AQE ASR+ EKLK+K EDPY+ ALKNY  +PDMVDRLGG+NM+LSDQA++A+T D+ +II
Sbjct: 173 AQEVASRQQEKLKIKLEDPYEVALKNYEPVPDMVDRLGGKNMKLSDQAVSAITIDIFIII 232

Query: 243 FTFCCIIYALYFKE 256
           F+ CCI Y ++FKE
Sbjct: 233 FSICCITYVVFFKE 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
TAIR|locus:2137961	249	NdhT "NADH dehydrogenase-like	0.957	0.995	0.561	1.8e-69
WB|WBGene00001036	249	dnj-18 [Caenorhabditis elegans	0.270	0.281	0.428	1.8e-12
TAIR|locus:2016234	500	AT1G80030 [Arabidopsis thalian	0.374	0.194	0.371	1.5e-10
TAIR|locus:2119465	197	J20 "AT4G13830" [Arabidopsis t	0.366	0.482	0.343	2.6e-10
UNIPROTKB|Q5T657	155	DNAJB5 "DnaJ homolog subfamily	0.235	0.393	0.460	4.5e-10
UNIPROTKB|O25668	288	C694_05300 "Co-chaperone-curve	0.247	0.222	0.484	4.7e-10
TAIR|locus:2166404	294	AT5G05750 [Arabidopsis thalian	0.447	0.394	0.301	9.2e-10
UNIPROTKB|I3LLG4	476	DNAJA3 "Uncharacterized protei	0.254	0.138	0.507	9.3e-10
GENEDB_PFALCIPARUM|PFF1415c	380	PFF1415c "DNAJ domain protein,	0.312	0.213	0.418	1.4e-09
UNIPROTKB|C6KTC7	380	PFF1415c "DNAJ domain protein,	0.312	0.213	0.418	1.4e-09

TAIR|locus:2137961 NdhT "NADH dehydrogenase-like complex T" [Arabidopsis thaliana (taxid:3702)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 146/260 (56%), Positives = 183/260 (70%)

Query:     1 MFMASTVSPQSPYSLFLKTQHGSLQQLTKEPRAATARTRSKILRVFASQKAGSNKSQRRA 60
             M  A++   ++   +  K Q+G+    T + +A    T  ++ R++ASQ  G  K  + +
Sbjct:     1 MAYATSTYARTSCIILPKIQNGA--HFTDDTKAFRRITARRVTRIYASQ--GPTKPSKPS 56

Query:    61 QPGVDTRIHWENEDEGWIGGSSSSSHQTNQNFNAEEEQKNLLG-EKFADLLNNSSDSHYQ 119
              PGVDTRIHWE+ DEGWIGG S  +       + +E++ NLL  EKFA+L+ +S DSHYQ
Sbjct:    57 -PGVDTRIHWESPDEGWIGGRSDPAK------SVDEDKTNLLSDEKFAELIKDSFDSHYQ 109

Query:   120 FLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYD 179
             FLG+S  ADLEEIKSAYRRLSKEYHPDTTSLPLK ASEKF+KLREVY+VLS+EE+RRFYD
Sbjct:   110 FLGVSTDADLEEIKSAYRRLSKEYHPDTTSLPLKTASEKFMKLREVYNVLSDEETRRFYD 169

Query:   180 WTLAQEAASRKAEKLKMKFEDPYDQALKNYGSIPDMVDRLGGRNMELSDQAMTALXXXXX 239
             WTLAQE ASR+AEK++MK EDP +Q  + Y SIPDMVDRLGGRNMELSDQAMTAL     
Sbjct:   170 WTLAQEVASRQAEKMRMKLEDPKEQDFRGYESIPDMVDRLGGRNMELSDQAMTALTFDIL 229

Query:   240 XXXXXXXXXXYALYFKEPYY 259
                       + + FK+P Y
Sbjct:   230 IVLFAVCCIAFVIVFKDPSY 249

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

WB|WBGene00001036 dnj-18 [Caenorhabditis elegans (taxid:6239)]

 Score = 165 (63.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
 Identities = 30/70 (42%), Positives = 49/70 (70%)

Query:   112 NSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSN 171
             +S   HY+ LG++ SA  ++IKSAY +LSK++HPDT     + A++KF ++   Y++LS+
Sbjct:    20 SSQQDHYKVLGLAQSASQKDIKSAYYKLSKQHHPDTNPTNKEEAAKKFHQVAMAYEILSS 79

Query:   172 EESRRFYDWT 181
             E+ R+ YD T
Sbjct:    80 EDKRKAYDMT 89

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

TAIR|locus:2016234 AT1G80030 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 39/105 (37%), Positives = 62/105 (59%)

Query:    79 GGSSSSSHQT----NQNFNAEEEQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKS 134
             GGS+   H++    + + ++    +N  G     +   S D +Y  LG+S SA+ +EIK+
Sbjct:    36 GGSNFRYHKSFLSLSSSSSSSTPYRNRRGRSLV-VFATSGD-YYATLGVSKSANNKEIKA 93

Query:   135 AYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYD 179
             AYRRL+++YHPD    P   A+EKF ++   Y+VLS+E+ R  YD
Sbjct:    94 AYRRLARQYHPDVNKEP--GATEKFKEISAAYEVLSDEQKRALYD 136

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

TAIR|locus:2119465 J20 "AT4G13830" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 35/102 (34%), Positives = 59/102 (57%)

Query:    85 SHQTNQNFNAEEEQKNLLGEKFADLLNNSSD-SHYQFLGISPSADLEEIKSAYRRLSKEY 143
             S+ T   F++   Q  L  +   D +  S D S Y  LG++ S  L EIK AY++L+++Y
Sbjct:    37 SYPTRTRFSSTRIQSRLTHD---DPVKQSEDLSFYDLLGVTESVTLPEIKQAYKQLARKY 93

Query:   144 HPDTTSLP--LKAASEKFLKLREVYDVLSNEESRRFYDWTLA 183
             HPD  S P  ++  +++F++++E Y+ LS+   R  YD  L+
Sbjct:    94 HPDV-SPPDRVEEYTDRFIRVQEAYETLSDPRRRVLYDRDLS 134

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

UNIPROTKB|Q5T657 DNAJB5 "DnaJ homolog subfamily B member 5" [Homo sapiens (taxid:9606)]

 Score = 145 (56.1 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 29/63 (46%), Positives = 41/63 (65%)

Query:   117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
             +Y+ LGI   A+ +EIK AYR+++ +YHPD    P   A EKF ++ E YDVLS+ + R 
Sbjct:     5 YYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEP--NAEEKFKEIAEAYDVLSDPKKRG 62

Query:   177 FYD 179
              YD
Sbjct:    63 LYD 65

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|O25668 C694_05300 "Co-chaperone-curved DNA binding protein A (CbpA)" [Helicobacter pylori 26695 (taxid:85962)]

 Score = 160 (61.4 bits), Expect = 4.7e-10, P = 4.7e-10
 Identities = 32/66 (48%), Positives = 44/66 (66%)

Query:   114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEE 173
             S S YQ L +S +A  +EIK +YRRL+++YHPD      K A EKF ++   Y++LS+EE
Sbjct:     2 SKSLYQTLNVSENASQDEIKKSYRRLARQYHPDLNKT--KEAEEKFKEINAAYEILSDEE 59

Query:   174 SRRFYD 179
              RR YD
Sbjct:    60 KRRQYD 65

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2166404 AT5G05750 [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 9.2e-10, P = 9.2e-10
 Identities = 38/126 (30%), Positives = 70/126 (55%)

Query:    80 GSSSSSHQTNQNFNAEEEQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRL 139
             GSSSS+  ++ + ++ EEQ+ ++ E     + +  D +Y+ LG+  +  +E+++ +YR+L
Sbjct:    84 GSSSSAAGSSSSSSSTEEQRTIVRE-----IKSKKD-YYEILGLKSNCSVEDLRKSYRKL 137

Query:   140 SKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAA--SRKAEKLKMK 197
             S + HPD    P   + E F  + + +  LSNE++RR YD + + E A   R+  +    
Sbjct:   138 SLKVHPDKNKAP--GSEEAFKSVSKAFQCLSNEDTRRKYDGSGSDEPAYQPRRDARRNNG 195

Query:   198 FEDPYD 203
             F   YD
Sbjct:   196 FNGFYD 201

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|I3LLG4 DNAJA3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 162 (62.1 bits), Expect = 9.3e-10, P = 9.3e-10
 Identities = 34/67 (50%), Positives = 45/67 (67%)

Query:   113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNE 172
             S + +YQ LG+  SA  +EIK AY +L+K+YHPDT     KA  EKF +L E Y+VLS+E
Sbjct:    90 SKEDYYQILGVPRSASQKEIKKAYYQLAKKYHPDTNKDDPKA-KEKFSQLAEAYEVLSDE 148

Query:   173 ESRRFYD 179
               R+ YD
Sbjct:   149 VKRKQYD 155

GO:0071340 "skeletal muscle acetylcholine-gated channel clustering" evidence=IEA

GO:0060336 "negative regulation of interferon-gamma-mediated signaling pathway" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051059 "NF-kappaB binding" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0043124 "negative regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0034341 "response to interferon-gamma" evidence=IEA

GO:0033256 "I-kappaB/NF-kappaB complex" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0008385 "IkappaB kinase complex" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0007569 "cell aging" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006924 "activation-induced cell death of T cells" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0006469 "negative regulation of protein kinase activity" evidence=IEA

GO:0006264 "mitochondrial DNA replication" evidence=IEA

GO:0005884 "actin filament" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005133 "interferon-gamma receptor binding" evidence=IEA

GO:0005083 "small GTPase regulator activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GENEDB_PFALCIPARUM|PFF1415c PFF1415c "DNAJ domain protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 159 (61.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 36/86 (41%), Positives = 52/86 (60%)

Query:   118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
             Y  LG+  +A  ++IK +YR+LSK+YHPD      K ++ KF ++ E Y++L +EE R+ 
Sbjct:    49 YDVLGVDKNASSDDIKKSYRKLSKKYHPDKAKD--KNSNNKFSEIAEAYEILGDEEKRKI 106

Query:   178 YDWTLAQEAASRKAEKLKMKFEDPYD 203
             YD     EAA +  E  KM  EDP D
Sbjct:   107 YD-RYGLEAA-KNMESNKMD-EDPSD 129

GO:0020011 "apicoplast" evidence=ISS

GO:0006986 "response to unfolded protein" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|C6KTC7 PFF1415c "DNAJ domain protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 159 (61.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 36/86 (41%), Positives = 52/86 (60%)

Query:   118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
             Y  LG+  +A  ++IK +YR+LSK+YHPD      K ++ KF ++ E Y++L +EE R+ 
Sbjct:    49 YDVLGVDKNASSDDIKKSYRKLSKKYHPDKAKD--KNSNNKFSEIAEAYEILGDEEKRKI 106

Query:   178 YDWTLAQEAASRKAEKLKMKFEDPYD 203
             YD     EAA +  E  KM  EDP D
Sbjct:   107 YD-RYGLEAA-KNMESNKMD-EDPSD 129

GO:0006986 "response to unfolded protein" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

GO:0020011 "apicoplast" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
pfam00226	63	pfam00226, DnaJ, DnaJ domain	5e-22
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	7e-20
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-18
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	4e-18
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	9e-17
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	7e-16
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	2e-15
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	3e-15
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	5e-15
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	6e-15
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	1e-14
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	2e-14
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	2e-14
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	6e-14
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	7e-14
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	8e-14
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	8e-14
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	1e-13
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	4e-13
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	4e-13
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	5e-13
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	4e-12
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	4e-12
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	8e-12
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	1e-11
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	2e-11
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	2e-11
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	2e-11
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	6e-11
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	9e-11
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	1e-10
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	2e-10
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	2e-10
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	7e-10
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	9e-08
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	3e-07
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	5e-07
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	3e-05
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	4e-04
PHA03102	153	PHA03102, PHA03102, Small T antigen; Reviewed	9e-04
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	0.002
PHA02624	647	PHA02624, PHA02624, large T antigen; Provisional	0.004

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 86.0 bits (214), Expect = 5e-22
 Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+   A  EEIK AYR+L+ +YHPD       AA EKF ++ E Y+VLS+ E R 
Sbjct: 2   YYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGD-PAAEEKFKEINEAYEVLSDPEKRA 60

Query: 177 FYD 179
            YD
Sbjct: 61  IYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 86.9 bits (216), Expect = 7e-20
 Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y+ LG+S  A  EEIK AYR+L+K+YHPD      K A EKF ++ E Y+VLS+ E R  
Sbjct: 3   YEILGVSKDASEEEIKKAYRKLAKKYHPDRN--KDKEAEEKFKEINEAYEVLSDPEKRAQ 60

Query: 178 YD 179
           YD
Sbjct: 61  YD 62

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 83.8 bits (208), Expect = 1e-18
 Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y+ LG+S  A  EEIK AYR+L+K+YHPD      K A EKF ++ E Y+VLS+ E R  
Sbjct: 7   YEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD-KEAEEKFKEINEAYEVLSDPEKRAA 65

Query: 178 YD 179
           YD
Sbjct: 66  YD 67

Length = 371

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 75.3 bits (186), Expect = 4e-18
 Identities = 26/59 (44%), Positives = 38/59 (64%)

Query: 116 SHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEES 174
            +Y+ LG+   A L+EIK AYR+L+ +YHPD      + A EKF ++ E Y+VLS+ E 
Sbjct: 2   DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 71.8 bits (177), Expect = 9e-17
 Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSN 171
           +Y  LG+ P A  EEIK AYR+L+ +YHPD        A EKF ++ E Y+VLS+
Sbjct: 2   YYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 76.0 bits (187), Expect = 7e-16
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+S +A  EEIK AYRRL+++YHPD        A EKF ++ E Y VLS+ E R+
Sbjct: 5   YYEILGVSRNATQEEIKKAYRRLARKYHPDFN--KNPEAEEKFKEINEAYQVLSDPEKRK 62

Query: 177 FYD 179
            YD
Sbjct: 63  LYD 65

Length = 382

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 72.9 bits (178), Expect = 2e-15
 Identities = 35/96 (36%), Positives = 49/96 (51%)

Query: 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEE 173
              +Y+ LG+ P+A LEEIK AYR+L+ +YHPD      K A EKF ++ E Y++LS+ E
Sbjct: 5   LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPE 64

Query: 174 SRRFYDWTLAQEAASRKAEKLKMKFEDPYDQALKNY 209
            R  YD   A      K+ +    F       L   
Sbjct: 65  RRAEYDKIGADNYFPGKSYRESAAFPIEGSLQLTGL 100

Length = 237

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 74.4 bits (183), Expect = 3e-15
 Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+S SA  +EIK AYR+LSK+YHPD        A EKF ++ E Y+VLS+++ R 
Sbjct: 6   YYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE--GADEKFKEISEAYEVLSDDQKRA 63

Query: 177 FYD 179
            YD
Sbjct: 64  QYD 66

Length = 376

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 73.4 bits (180), Expect = 5e-15
 Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+S +A  +EIKSAYR+L+ +YHPD      K A+EKF ++ E Y VLS+ E R 
Sbjct: 4   YYELLGVSRTASADEIKSAYRKLALKYHPDRN--KEKGAAEKFAQINEAYAVLSDAEKRA 61

Query: 177 FYD 179
            YD
Sbjct: 62  HYD 64

Length = 371

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 73.3 bits (181), Expect = 6e-15
 Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 3/63 (4%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLP-LKAASEKFLKLREVYDVLSNEESRR 176
           Y+ LG+S +A  +EIK AYR+L+ +YHPD    P  K A EKF +++E Y+VLS+ + R 
Sbjct: 7   YEVLGVSRNASEDEIKKAYRKLAMKYHPDRN--PGDKEAEEKFKEIKEAYEVLSDPQKRA 64

Query: 177 FYD 179
            YD
Sbjct: 65  AYD 67

Length = 371

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 72.5 bits (178), Expect = 1e-14
 Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 1/63 (1%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+S SAD +EIK AYR+L+ +YHPD      K A E F ++ E Y+VLSN++ RR
Sbjct: 5   YYEVLGVSRSADKDEIKKAYRKLALKYHPDKNP-DNKEAEEHFKEVNEAYEVLSNDDKRR 63

Query: 177 FYD 179
            YD
Sbjct: 64  RYD 66

Length = 397

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 4/109 (3%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+  +AD +EIK AYR+L+++YHPD +      A EKF ++ E Y VLS++E R+
Sbjct: 7   YYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEE--GAEEKFKEISEAYAVLSDDEKRQ 64

Query: 177 FYDWTLAQEAASRKAEKL--KMKFEDPYDQALKNYGSIPDMVDRLGGRN 223
            YD            E +   + FED +       G+I DM    GG  
Sbjct: 65  RYDQFGHAGMDGFSQEDIFNNINFEDIFQGFGFGIGNIFDMFGFGGGSR 113

Length = 378

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 70.7 bits (173), Expect = 2e-14
 Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 3/76 (3%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y  LG+  +A  +EIK A+++L+++YHPD    P   A EKF ++ E Y VLS+ E RR
Sbjct: 6   YYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSP--GAEEKFKEINEAYTVLSDPEKRR 63

Query: 177 FYDWTLAQEAASRKAE 192
            YD T    AAS   +
Sbjct: 64  IYD-TYGTTAASAGWQ 78

Length = 291

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 70.1 bits (172), Expect = 6e-14
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y  LG+S +A   EIK AYR+L++E HPD    P + A EKF ++   Y+VLS+ E RR
Sbjct: 5   YYGLLGVSRNASDAEIKRAYRKLARELHPDVN--PDEEAQEKFKEISVAYEVLSDPEKRR 62

Query: 177 FYD 179
             D
Sbjct: 63  IVD 65

Length = 378

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 70.0 bits (172), Expect = 7e-14
 Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 2/62 (3%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y+ LG+S  AD +E+K AYRRL+++YHPD    P   A ++F ++   Y+VLS+ E+R  
Sbjct: 6   YEILGVSRDADKDELKRAYRRLARKYHPDVNKEP--GAEDRFKEINRAYEVLSDPETRAR 63

Query: 178 YD 179
           YD
Sbjct: 64  YD 65

Length = 374

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 69.5 bits (170), Expect = 8e-14
 Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y  +G+ P+ DL+ IK+AYRRL+++YHPD +  P   A  +F ++ E ++VLS+E+ R 
Sbjct: 6   YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP--DAEARFKEVAEAWEVLSDEQRRA 63

Query: 177 FYD 179
            YD
Sbjct: 64  EYD 66

Length = 306

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 69.8 bits (171), Expect = 8e-14
 Identities = 30/63 (47%), Positives = 43/63 (68%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+S +A  EEIK AY+RL KE+HPD      K A +KF +++E Y+VLS+ + R 
Sbjct: 6   YYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA 65

Query: 177 FYD 179
            YD
Sbjct: 66  MYD 68

Length = 369

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 2/62 (3%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y  LG+S  A  +EIK AYR+LSK+YHPD    P   A EK+ +++E Y+ LS+ + R  
Sbjct: 7   YDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP--GAEEKYKEVQEAYETLSDPQKRAA 64

Query: 178 YD 179
           YD
Sbjct: 65  YD 66

Length = 380

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+   A   EIK AYR+L++EYHPD      KA  E+F ++ E YDVLS+E+ R+
Sbjct: 11  YYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAE-ERFKEISEAYDVLSDEKKRK 69

Query: 177 FYD 179
            YD
Sbjct: 70  EYD 72

Length = 389

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 67.9 bits (166), Expect = 4e-13
 Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+  +A  EEIK AYRRL+K+YHPD      K A +KF ++ E Y++LS+ + R 
Sbjct: 7   YYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD-KEAEQKFKEINEAYEILSDPQKRA 65

Query: 177 FYD 179
            YD
Sbjct: 66  QYD 68

Length = 386

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 67.4 bits (165), Expect = 5e-13
 Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y+ LG+S  A  EEIK AYR+L++E HPD       AA E+F  + E +DVLS+   R+ 
Sbjct: 12  YKELGVSSDASAEEIKKAYRKLARELHPDANPGD-PAAEERFKAVSEAHDVLSDPAKRKE 70

Query: 178 YDWT 181
           YD T
Sbjct: 71  YDET 74

Length = 392

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 65.0 bits (158), Expect = 4e-12
 Identities = 28/65 (43%), Positives = 42/65 (64%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+  +A  E+IK A+R L+K++HPD        A EKF ++ E Y+VLS+ + RR
Sbjct: 5   YYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRR 64

Query: 177 FYDWT 181
            YD T
Sbjct: 65  QYDQT 69

Length = 365

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 64.9 bits (158), Expect = 4e-12
 Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+S  A +E+IK AYR+L+ +YHPD    P   A EKF ++ E Y VLS+ E R 
Sbjct: 7   YYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP--DAEEKFKEISEAYAVLSDAEKRA 64

Query: 177 FYD 179
            YD
Sbjct: 65  QYD 67

Length = 377

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 63.9 bits (155), Expect = 8e-12
 Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEE 173
           S  +YQ LG+S +A   ++K AY +L+K+YHPDTT    K A +KF ++   YDVL +E+
Sbjct: 2   SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD--AKDAEKKFKEINAAYDVLKDEQ 59

Query: 174 SRRFYD 179
            R  YD
Sbjct: 60  KRAAYD 65

Length = 372

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 3/64 (4%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEK-FLKLREVYDVLSNEESR 175
           +Y  LG+S +A  EEIK AYR+L+ +YHPD    P  A +EK F ++ E Y+VLS+ + R
Sbjct: 3   YYTILGVSKTASPEEIKKAYRKLAVKYHPDKN--PGDAEAEKRFKEVSEAYEVLSDAQKR 60

Query: 176 RFYD 179
             YD
Sbjct: 61  ESYD 64

Length = 391

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 63.7 bits (154), Expect = 2e-11
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LGI   AD +EIK A+R+L+K+YHPD    P   A+  F ++ E  DVLSN + R 
Sbjct: 4   YYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAP--DAASIFAEINEANDVLSNPKKRA 61

Query: 177 FYD 179
            YD
Sbjct: 62  NYD 64

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+S +A ++EIK AYR+ + +YHPD      K A EKF +  E YDVLS+ + R 
Sbjct: 7   YYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD-KEAEEKFKEAAEAYDVLSDPDKRS 65

Query: 177 FYD 179
            YD
Sbjct: 66  RYD 68

Length = 386

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 62.7 bits (152), Expect = 2e-11
 Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNE 172
           S  S+Y  LG+S SA+ EEIKSAYR+L+ +YHPD      K + EKF +  E Y++L + 
Sbjct: 2   SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN-KESEEKFKEATEAYEILRDP 60

Query: 173 ESRRFYD 179
           + R+ YD
Sbjct: 61  KKRQAYD 67

Length = 372

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 61.6 bits (149), Expect = 6e-11
 Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 2/67 (2%)

Query: 113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNE 172
           S   +Y+ LG+  +A ++E+K AYR+L+++YHPD    P   A +KF +++E YD LS+ 
Sbjct: 2   SKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAP--DAEDKFKEVKEAYDTLSDP 59

Query: 173 ESRRFYD 179
           + +  YD
Sbjct: 60  QKKAHYD 66

Length = 371

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 60.9 bits (148), Expect = 9e-11
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKA-ASEKFLKLREVYDVLSNEESR 175
           +Y+ LG+S  A  +EIK AYR+L+ +YHPD    P    A +KF +  E Y+VL + E R
Sbjct: 6   YYEVLGVSRDASEDEIKKAYRKLALQYHPDRN--PDNPEAEQKFKEAAEAYEVLRDAEKR 63

Query: 176 RFYD 179
             YD
Sbjct: 64  ARYD 67

Length = 373

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 60.7 bits (147), Expect = 1e-10
 Identities = 26/63 (41%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+S +A  +EI+ AYR+L+K+YHPD    P   A +K +++ E  DVL +++ R+
Sbjct: 6   YYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP--DAHDKMVEINEAADVLLDKDKRK 63

Query: 177 FYD 179
            YD
Sbjct: 64  QYD 66

Length = 372

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG++  A  EEIK +YR+L+ +YHPD      K A E F +  E Y+VLS+ + R 
Sbjct: 6   YYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD-KEAEELFKEAAEAYEVLSDPKKRG 64

Query: 177 FYD 179
            YD
Sbjct: 65  IYD 67

Length = 366

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y+ L +S      EIK AYR+L+ ++HPD    P     EKF ++   Y+VLS+ E R+ 
Sbjct: 31  YEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDP-----EKFKEISRAYEVLSDPEKRKI 85

Query: 178 YD 179
           YD
Sbjct: 86  YD 87

Length = 421

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 58.3 bits (141), Expect = 7e-10
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNE 172
           +S  +Y+ LG+   A  +EIK A+R+L+ +YHPD      K A EKF ++ E Y VLS+ 
Sbjct: 2   ASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN-KEAEEKFKEINEAYQVLSDP 60

Query: 173 ESRRFYD 179
           + +  YD
Sbjct: 61  QKKAQYD 67

Length = 380

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 52.0 bits (124), Expect = 9e-08
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 116 SHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESR 175
           S+Y+ L +   ++ E IK +YR+L+ +YHPD  +   K A EKF  + E Y VLS+E+ R
Sbjct: 4   SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD-KEAEEKFKLINEAYGVLSDEKKR 62

Query: 176 RFYD 179
             YD
Sbjct: 63  ALYD 66

Length = 369

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 50.4 bits (120), Expect = 3e-07
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+S  A  +EIK AYR+++ +YHPD      +A S  F +  E Y+VL ++  R 
Sbjct: 5   YYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAES-IFKEATEAYEVLIDDNKRA 63

Query: 177 FYD 179
            YD
Sbjct: 64  QYD 66

Length = 365

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 49.4 bits (119), Expect = 5e-07
 Identities = 17/29 (58%), Positives = 22/29 (75%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPD 146
           Y+ LG+S S D +EIK AYR+L  E+HPD
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPD 231

Length = 267

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPD----TTSLPLKAASEKFLKLREVYDVLSNEE 173
           Y+ LGI       +IK  YR LS ++HPD      +       EK+  + + Y +L++++
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160

Query: 174 SRRFY 178
            R  Y
Sbjct: 161 RRENY 165

Length = 610

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLR---EVYDVLSNEE 173
            Y  LG+  +AD++EI   Y +L++ Y+P     P ++ +E F K +   E Y +L + +
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYP-----PKRSGNEGFHKFKKINEAYQILGDID 629

Query: 174 SRRFYD 179
            ++ Y+
Sbjct: 630 KKKMYN 635

Length = 1136

>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed

 Score = 38.5 bits (90), Expect = 9e-04
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 119 QFLGISPSA--DLEEIKSAYRRLSKEYHPD 146
             LG+  SA  +L  ++ AY R   E+HPD
Sbjct: 9   DLLGLPRSAWGNLPLMRKAYLRKCLEFHPD 38

Length = 153

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 117 HYQFLGISP---SADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREV-YDVLSNE 172
            Y  LG+S     A   +I  A+++   +YHPD T+       ++F KL +   +VL + 
Sbjct: 45  LYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDR 104

Query: 173 ESRRFYD 179
           + R  YD
Sbjct: 105 KLRLQYD 111

Length = 379

>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 119 QFLGISPSA--DLEEIKSAYRRLSKEYHPD 146
             LG+  +A  +L  ++ AY R  KEYHPD
Sbjct: 15  DLLGLPMAAWGNLPLMRKAYLRKCKEYHPD 44

Length = 647

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.91
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.89
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.83
PRK14288	369	chaperone protein DnaJ; Provisional	99.82
PRK14296	372	chaperone protein DnaJ; Provisional	99.81
PRK14279	392	chaperone protein DnaJ; Provisional	99.79
PRK14286	372	chaperone protein DnaJ; Provisional	99.78
PRK14282	369	chaperone protein DnaJ; Provisional	99.77
PRK14287	371	chaperone protein DnaJ; Provisional	99.77
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.76
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.76
PRK14283	378	chaperone protein DnaJ; Provisional	99.76
PRK14285	365	chaperone protein DnaJ; Provisional	99.76
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.76
PRK14298	377	chaperone protein DnaJ; Provisional	99.76
PRK14276	380	chaperone protein DnaJ; Provisional	99.75
PRK14299	291	chaperone protein DnaJ; Provisional	99.75
PRK14277	386	chaperone protein DnaJ; Provisional	99.75
PRK14278	378	chaperone protein DnaJ; Provisional	99.75
PRK14291	382	chaperone protein DnaJ; Provisional	99.75
PRK14294	366	chaperone protein DnaJ; Provisional	99.75
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.75
PRK14280	376	chaperone protein DnaJ; Provisional	99.74
PRK14301	373	chaperone protein DnaJ; Provisional	99.74
PRK14295	389	chaperone protein DnaJ; Provisional	99.74
PRK14297	380	chaperone protein DnaJ; Provisional	99.74
PRK14284	391	chaperone protein DnaJ; Provisional	99.74
PRK14281	397	chaperone protein DnaJ; Provisional	99.73
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.73
PRK10767	371	chaperone protein DnaJ; Provisional	99.73
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.72
PRK14290	365	chaperone protein DnaJ; Provisional	99.72
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.71
PRK14300	372	chaperone protein DnaJ; Provisional	99.7
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.7
PRK14289	386	chaperone protein DnaJ; Provisional	99.7
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.7
PRK14293	374	chaperone protein DnaJ; Provisional	99.69
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.69
PRK14292	371	chaperone protein DnaJ; Provisional	99.69
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.68
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.67
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.64
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.6
PHA03102	153	Small T antigen; Reviewed	99.57
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.56
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.55
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.53
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.51
PRK05014	171	hscB co-chaperone HscB; Provisional	99.49
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.49
PRK01356	166	hscB co-chaperone HscB; Provisional	99.48
PRK03578	176	hscB co-chaperone HscB; Provisional	99.42
PRK00294	173	hscB co-chaperone HscB; Provisional	99.41
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.4
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.38
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.37
PTZ00100	116	DnaJ chaperone protein; Provisional	99.32
PHA02624	647	large T antigen; Provisional	99.2
PRK01773	173	hscB co-chaperone HscB; Provisional	99.03
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.99
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.98
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.98
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.84
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.27
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.24
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.16
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.23
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.6
KOG0431	453	consensus Auxilin-like protein and related protein	96.13
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.45
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	94.2
PF13446	62	RPT: A repeated domain in UCH-protein	87.2
KOG0724	335	consensus Zuotin and related molecular chaperones	85.07

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=7.9e-25  Score=204.48  Aligned_cols=74  Identities=43%  Similarity=0.633  Sum_probs=69.3

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHH
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAA  187 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~  187 (259)
                      ..+|||+||||+++||.+|||+|||+||++||||+|+.+ ++|+++|++|+|||+|||||++|+.||+++.....
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~-~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~   75 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD-KEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK   75 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence            368999999999999999999999999999999999964 69999999999999999999999999999877765

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1.1e-23  Score=192.79  Aligned_cols=76  Identities=36%  Similarity=0.603  Sum_probs=71.4

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHHhh
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAASR  189 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~~~  189 (259)
                      ..+|||+||||+++|+..|||+||||||++||||||+++ +.|.+.|++|+.||+|||||++|+.||..|.++....
T Consensus        14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd-p~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~   89 (336)
T KOG0713|consen   14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD-PNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDE   89 (336)
T ss_pred             cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccc
Confidence            468999999999999999999999999999999999987 7999999999999999999999999999997776543

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=7e-21  Score=175.95  Aligned_cols=71  Identities=42%  Similarity=0.692  Sum_probs=66.5

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHHh
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAAS  188 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~~  188 (259)
                      ...+|+||||+++||.+|||+|||+|+++||||||+.    +.++|++|++||+|||||++|++||+++.++...
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~   73 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD----AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQG   73 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcc
Confidence            4689999999999999999999999999999999974    8899999999999999999999999999877743

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.6e-20  Score=177.31  Aligned_cols=71  Identities=38%  Similarity=0.590  Sum_probs=65.7

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      ..|||+||||+++||.+|||+|||+||++||||+|+.. +.++++|++|++||+||+||++|+.||+++..+
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~-~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~   72 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD-KEAEEKFKLINEAYGVLSDEKKRALYDRYGKKG   72 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cHHHHHHHHHHHHHHHhccHHHHHHHHHhcccc
Confidence            36999999999999999999999999999999999754 468999999999999999999999999987653

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=3e-20  Score=175.59  Aligned_cols=70  Identities=37%  Similarity=0.649  Sum_probs=65.5

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      .+|||+||||+++|+.+|||+|||+||++||||+|+..  .++++|++|++||+|||||++|+.||+++..+
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~--~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~   72 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP--DAHDKMVEINEAADVLLDKDKRKQYDQFGHAA   72 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHhcCHHHhhhhhhccchh
Confidence            46999999999999999999999999999999999754  78999999999999999999999999988654

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.1e-19  Score=172.75  Aligned_cols=69  Identities=43%  Similarity=0.624  Sum_probs=65.0

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      .+|||+||||+++|+.+|||+|||+|+++||||+++.. +.++++|++|++||+|||||++|+.||+++.
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~   76 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD-PAAEERFKAVSEAHDVLSDPAKRKEYDETRR   76 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence            47999999999999999999999999999999999754 5789999999999999999999999999875

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=2e-19  Score=170.03  Aligned_cols=72  Identities=42%  Similarity=0.618  Sum_probs=66.3

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEA  186 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~  186 (259)
                      ..|||+||||+++||.+|||+|||+|+++||||+++.. +.++++|++|++||+||+||.+|+.||+++..+.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~   74 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN-KESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV   74 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhh
Confidence            36999999999999999999999999999999999754 4789999999999999999999999999886543

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=3e-19  Score=168.62  Aligned_cols=72  Identities=42%  Similarity=0.639  Sum_probs=66.2

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      .+|||+||||+++||.+|||+|||+|+++||||+|+.....++++|++|++||+||+||.+|+.||.++..+
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~   74 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG   74 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence            479999999999999999999999999999999997644568999999999999999999999999987543

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=4.8e-19  Score=167.31  Aligned_cols=70  Identities=34%  Similarity=0.679  Sum_probs=65.1

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      ..|||+||||+++||.+|||+|||+|+++||||+|+.  +.++++|++|++||+||+||.+|+.||+++..+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~   72 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTD   72 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcc
Confidence            3699999999999999999999999999999999975  378899999999999999999999999987654

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=6.5e-19  Score=157.31  Aligned_cols=74  Identities=32%  Similarity=0.513  Sum_probs=69.2

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHHh
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAAS  188 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~~  188 (259)
                      ..++|+||||+++|+.++|||+||+|+++||||+++++ +++..+|++||+||+||+||.+|..||.+|..+...
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~-P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l  103 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN-PEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL  103 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC-chhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence            46899999999999999999999999999999999986 689999999999999999999999999998777654

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.76  E-value=9.3e-19  Score=124.99  Aligned_cols=64  Identities=53%  Similarity=0.860  Sum_probs=60.4

Q ss_pred             CccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhh
Q 024973          116 SHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYD  179 (259)
Q Consensus       116 ~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD  179 (259)
                      |||+||||+++++.++||++|+++++++|||++......+.+.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            5899999999999999999999999999999988763468999999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=6.7e-19  Score=166.68  Aligned_cols=70  Identities=41%  Similarity=0.687  Sum_probs=65.6

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      .+|||+||||+++||.+|||+|||+|+++||||+|+.  +.++++|++|++||+||+||.+|+.||+++..+
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g   73 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAG   73 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhchhHHHHHHhhhcccc
Confidence            4799999999999999999999999999999999985  479999999999999999999999999987654

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=7.3e-19  Score=165.77  Aligned_cols=70  Identities=36%  Similarity=0.571  Sum_probs=65.4

Q ss_pred             cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      +|||+||||+++||.+|||+|||+|+++||||+++.. +.+.++|++|++||+||+||.+|+.||.++..+
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~   72 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN-KEAESIFKEATEAYEVLIDDNKRAQYDRFGHTA   72 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHcCcchhHHHHhcCcch
Confidence            6999999999999999999999999999999999764 478899999999999999999999999987654

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.76  E-value=6e-19  Score=169.00  Aligned_cols=67  Identities=36%  Similarity=0.585  Sum_probs=62.1

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      ..|||+||||+++||.+|||+|||+||++||||+++.     .++|++|++||+||+||.+|+.||.++..+
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~-----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~   93 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-----PEKFKEISRAYEVLSDPEKRKIYDEYGEEG   93 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch-----HHHHHHHHHHHHHhccHHHHHHHhhhcchh
Confidence            4799999999999999999999999999999999853     489999999999999999999999987654

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=6.9e-19  Score=166.60  Aligned_cols=70  Identities=41%  Similarity=0.658  Sum_probs=65.1

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      .+|||+||||+++|+.+|||+|||+|+++||||+++.  +.++++|++|++||+||+||.+|+.||+++..+
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   73 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAG   73 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC--hhHHHHHHHHHHHHHHhcchHhhhhhhhcCccc
Confidence            4699999999999999999999999999999999975  378899999999999999999999999987643

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=7.4e-19  Score=166.54  Aligned_cols=70  Identities=43%  Similarity=0.677  Sum_probs=65.3

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      .+|||+||||+++||.+|||+|||+|+++||||+++..  .++++|++|++||+||+||.+|+.||+++..+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~   72 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP--GAEEKYKEVQEAYETLSDPQKRAAYDQYGAAG   72 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--CHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcc
Confidence            36999999999999999999999999999999999854  78999999999999999999999999987654

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=9.7e-19  Score=160.30  Aligned_cols=70  Identities=39%  Similarity=0.667  Sum_probs=65.1

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      ..|||+||||+++||.+|||+|||+|+++||||+++.  +.++++|++|++||+||+||.+|+.||.++..+
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~   72 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA   72 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence            4699999999999999999999999999999999975  378999999999999999999999999987653

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.1e-18  Score=165.74  Aligned_cols=71  Identities=41%  Similarity=0.648  Sum_probs=65.7

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      ..|||+||||+++||.+|||+|||+|+++||||+++.. +.++++|++|++||+||+||.+|+.||.++..+
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~   74 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD-KEAEQKFKEINEAYEILSDPQKRAQYDQFGHAA   74 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccc
Confidence            36999999999999999999999999999999999854 478899999999999999999999999987654

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.2e-18  Score=165.05  Aligned_cols=68  Identities=41%  Similarity=0.621  Sum_probs=64.1

Q ss_pred             cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHH
Q 024973          115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQ  184 (259)
Q Consensus       115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~  184 (259)
                      +|||+||||+++|+.+|||+|||+|+++||||+|++  +.++++|++|++||+||+||.+|+.||.++..
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~   70 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP   70 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc--HHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence            699999999999999999999999999999999985  47899999999999999999999999998753

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.2e-18  Score=165.25  Aligned_cols=70  Identities=46%  Similarity=0.742  Sum_probs=65.4

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      .+|||+||||+++|+.+|||+|||+|+++||||+|+.+  .+.++|++|++||+||+||.+|+.||.++..+
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~   71 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP--EAEEKFKEINEAYQVLSDPEKRKLYDQFGHAA   71 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--cHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Confidence            36999999999999999999999999999999999863  78899999999999999999999999987654

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.5e-18  Score=163.75  Aligned_cols=71  Identities=38%  Similarity=0.600  Sum_probs=65.9

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      .+|||+||||+++||.+|||+|||+|+++||||+++.. +.++++|++|++||+||+||.+|+.||+++..+
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g   73 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD-KEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEG   73 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-hHHHHHHHHHHHHHHHhccHHHHHHHHhhcccc
Confidence            47999999999999999999999999999999999864 468899999999999999999999999988654

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1.7e-18  Score=163.79  Aligned_cols=77  Identities=32%  Similarity=0.596  Sum_probs=71.8

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHHhh
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAASR  189 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~~~  189 (259)
                      ..+.||+||||.++|+..+||++||+|||+||||||+...++++++|+.|+.||+|||||+.|+.||....+.....
T Consensus         6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~   82 (508)
T KOG0717|consen    6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK   82 (508)
T ss_pred             hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence            46799999999999999999999999999999999999889999999999999999999999999999887666543

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=1.5e-18  Score=164.20  Aligned_cols=70  Identities=44%  Similarity=0.681  Sum_probs=65.3

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++..  .++++|++|++||+||+||.+|+.||.++..+
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~--~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~   72 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE--GADEKFKEISEAYEVLSDDQKRAQYDQFGHAG   72 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence            36999999999999999999999999999999999764  78999999999999999999999999987654

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=1.6e-18  Score=163.94  Aligned_cols=71  Identities=38%  Similarity=0.579  Sum_probs=65.8

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      ..|||+||||+++||.+|||+|||+|+++||||+++.. +.++++|++|++||+||+||.+|+.||.++..+
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g   73 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-PEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAG   73 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC-hHHHHHHHHHHHHHHHhcchhhhhhhhhccccc
Confidence            47999999999999999999999999999999999764 468899999999999999999999999987654

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=1.7e-18  Score=164.46  Aligned_cols=66  Identities=44%  Similarity=0.735  Sum_probs=62.5

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDW  180 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~  180 (259)
                      ..|||+||||+++||.+|||+|||+|+++||||+++.. +.++++|++|++||+||+||.+|+.||+
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~   73 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD-AKAEERFKEISEAYDVLSDEKKRKEYDE   73 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence            46999999999999999999999999999999999764 4689999999999999999999999998

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=1.5e-18  Score=164.41  Aligned_cols=71  Identities=38%  Similarity=0.612  Sum_probs=65.8

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      ..|||+||||+++||.+|||+|||+|+++||||+++.. +.++++|++|++||+||+||.+|+.||+++..+
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~   73 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN-KEAEEKFKEINEAYQVLSDPQKKAQYDQFGTAD   73 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcCHhhhCchhhcCccc
Confidence            36999999999999999999999999999999999764 478999999999999999999999999987654

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=2.1e-18  Score=163.99  Aligned_cols=70  Identities=39%  Similarity=0.612  Sum_probs=65.0

Q ss_pred             cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      .|||+||||+++||.+|||+|||+|+++||||++++. +.+.++|++|++||+||+||.+|+.||+++..+
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   70 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD-AEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG   70 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence            3899999999999999999999999999999999864 478999999999999999999999999987653

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=3e-18  Score=163.21  Aligned_cols=71  Identities=45%  Similarity=0.688  Sum_probs=65.8

Q ss_pred             cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHH
Q 024973          115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEA  186 (259)
Q Consensus       115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~  186 (259)
                      .|||+||||+++|+.+|||+|||+|+++||||+++.. +.++++|++|++||+||+||.+|+.||.++..+.
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~   73 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN-KEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV   73 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence            6999999999999999999999999999999999764 4688999999999999999999999999876543

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=2.8e-18  Score=156.83  Aligned_cols=75  Identities=43%  Similarity=0.616  Sum_probs=69.5

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHHhh
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAASR  189 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~~~  189 (259)
                      ..|||+||||+.+|+..||++|||+.+++||||||+++. .|.++|+.|.+||+||+|+.+|..||..+..+....
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP-~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~   78 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDP-QAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ   78 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence            579999999999999999999999999999999999984 599999999999999999999999999987765443

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=4.1e-18  Score=160.90  Aligned_cols=71  Identities=41%  Similarity=0.645  Sum_probs=65.5

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      ..|||+||||+++||.+|||+|||+|+++||||+++.. +.+.++|++|++||+||+||.+|+.||.++..+
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~   73 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-KEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAA   73 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-HHHHHHHHHHHHHHHHhcchhhhhHhhhccccc
Confidence            46999999999999999999999999999999999754 468899999999999999999999999987654

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=6.6e-18  Score=154.63  Aligned_cols=69  Identities=45%  Similarity=0.730  Sum_probs=66.1

Q ss_pred             cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      .|||+||||+++|+..|||+||++|+++||||.|...  ++.++|++|.+|||||+|+++|+.||..+...
T Consensus        43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~--~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK--EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc--chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            4999999999999999999999999999999999986  99999999999999999999999999988765

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=6.5e-18  Score=159.32  Aligned_cols=71  Identities=39%  Similarity=0.637  Sum_probs=66.0

Q ss_pred             cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      .|||+||||+++||.+|||+|||+|+++||||+++...+.+.++|++|++||+||+|+.+|+.||.++..+
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~   73 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVD   73 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcc
Confidence            69999999999999999999999999999999998654478999999999999999999999999987643

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=8.4e-18  Score=159.27  Aligned_cols=74  Identities=42%  Similarity=0.614  Sum_probs=69.0

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLP--LKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAA  187 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~--~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~  187 (259)
                      ..+||.+|+|+++||.+|||+|||++++.|||||..++  .+.|++.|+.|.+||||||||++|.+||.+|.++..
T Consensus         8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            45899999999999999999999999999999998765  457999999999999999999999999999988865

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=1.1e-17  Score=158.02  Aligned_cols=69  Identities=41%  Similarity=0.666  Sum_probs=64.5

Q ss_pred             cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      .|||+||||+++||.+|||+|||+|+++||||+++..  .++++|++|++||+||+|+.+|+.||.++..+
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~   71 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAK--DAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA   71 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--CHHHHHHHHHHHHHHhhhHhHhhHHHhccccc
Confidence            6999999999999999999999999999999998743  68899999999999999999999999987654

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.70  E-value=1.2e-17  Score=156.68  Aligned_cols=68  Identities=47%  Similarity=0.700  Sum_probs=63.6

Q ss_pred             CccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          116 SHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       116 ~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      |||+||||+++|+.+|||+|||+|+++||||+++.  +.+.++|++|++||+||+|+.+|+.||.++..+
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~   68 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAG   68 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhhChHHHHhhhhccccc
Confidence            69999999999999999999999999999999974  378899999999999999999999999987654

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=1.8e-17  Score=157.41  Aligned_cols=71  Identities=41%  Similarity=0.613  Sum_probs=65.9

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      ..|||+||||+++||.+|||+|||+|+++||||+++.. +.+.++|++|++||+||+||.+|+.||.++..+
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~   74 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD-KEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG   74 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-hHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence            47999999999999999999999999999999999865 478999999999999999999999999987654

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.70  E-value=2e-17  Score=152.58  Aligned_cols=67  Identities=40%  Similarity=0.776  Sum_probs=63.3

Q ss_pred             cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      +|||+||||+++|+.+|||+|||+|+++||||+++..  .+.++|++|++||+||+||.+|+.||.++.
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~--~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP--DAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            6999999999999999999999999999999998754  799999999999999999999999999763

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=2.4e-17  Score=155.87  Aligned_cols=70  Identities=40%  Similarity=0.717  Sum_probs=65.0

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++..  .++++|++|++||+||+||.+|+.||.++..+
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g   71 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP--GAEDRFKEINRAYEVLSDPETRARYDQFGEAG   71 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--CHHHHHHHHHHHHHHHhchHHHHHHhhccccc
Confidence            36999999999999999999999999999999999764  78899999999999999999999999987653

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=1.6e-17  Score=145.68  Aligned_cols=73  Identities=36%  Similarity=0.576  Sum_probs=66.3

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLP-LKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~-~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      ...++|+||||.++|+..+|++||++|++++|||+++.. ..+++++|++|+.||+||+|.++|+.||+.|...
T Consensus        12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen   12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            456999999999999999999999999999999998643 3579999999999999999999999999987554

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=2.6e-17  Score=155.47  Aligned_cols=69  Identities=45%  Similarity=0.703  Sum_probs=64.5

Q ss_pred             cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      .|||+||||+++||.++||+|||+|+++||||+++.  ..+.++|++|++||+||+||.+|+.||.++..+
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~--~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~   70 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP   70 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence            589999999999999999999999999999999975  378999999999999999999999999987643

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.68  E-value=4.1e-17  Score=165.91  Aligned_cols=71  Identities=27%  Similarity=0.480  Sum_probs=66.3

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEA  186 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~  186 (259)
                      ..+||+||||+++||..+||+|||+||++||||+++.+  .+.++|+.|++||+|||||.+|+.||.+|..+.
T Consensus       572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~--~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl  642 (1136)
T PTZ00341        572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN--EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGI  642 (1136)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHHhCCHHHHHHHhhcccccc
Confidence            57999999999999999999999999999999999875  688899999999999999999999999886653

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.67  E-value=1.2e-16  Score=112.20  Aligned_cols=59  Identities=44%  Similarity=0.755  Sum_probs=54.4

Q ss_pred             cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCch
Q 024973          115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEE  173 (259)
Q Consensus       115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~  173 (259)
                      .+||+||||+++++.++||++|+++++++|||++....+.+.+.|++|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            48999999999999999999999999999999998533578999999999999999985

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.64  E-value=5.1e-16  Score=107.10  Aligned_cols=55  Identities=47%  Similarity=0.799  Sum_probs=51.8

Q ss_pred             CccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcC
Q 024973          116 SHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSN  171 (259)
Q Consensus       116 ~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsd  171 (259)
                      |||+||||+++++.++||++|++|++++|||++... +.+.+.|.+|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~-~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcC
Confidence            689999999999999999999999999999999864 4789999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=1.2e-15  Score=129.89  Aligned_cols=69  Identities=45%  Similarity=0.689  Sum_probs=64.1

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHh
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTL  182 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~  182 (259)
                      ..+||+||||+++|+.+|||+|||+++++||||+++.+...+.++|+.|++||+||+|+.+|..||..+
T Consensus         5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            579999999999999999999999999999999998762248999999999999999999999999864

>PHA03102 Small T antigen; Reviewed

Probab=99.57  E-value=1.6e-15  Score=126.76  Aligned_cols=66  Identities=24%  Similarity=0.301  Sum_probs=60.3

Q ss_pred             cCccceeccCCCC--CHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          115 DSHYQFLGISPSA--DLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       115 ~~~Y~iLgv~~~a--s~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      ..+|+||||+++|  |.++||+|||++++++|||+++.     .++|++|++||++|+|+.+|..||..+...
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~-----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~   72 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD-----EEKMKELNTLYKKFRESVKSLRDLDGEEDS   72 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch-----hHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence            4679999999999  99999999999999999999743     479999999999999999999999987544

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.56  E-value=4.1e-15  Score=148.57  Aligned_cols=69  Identities=42%  Similarity=0.639  Sum_probs=64.3

Q ss_pred             cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      .|||+||||+++|+.++||+|||+|+++||||+++..  .+.++|++|++||++|+||.+|+.||.++..+
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~--eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG   70 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAP--DAASIFAEINEANDVLSNPKKRANYDKYGHDG   70 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh--hHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence            5899999999999999999999999999999998763  78889999999999999999999999987544

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=5.9e-15  Score=128.32  Aligned_cols=71  Identities=34%  Similarity=0.551  Sum_probs=65.1

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHH
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQ  184 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~  184 (259)
                      ..-|+|+||||++++|..|||+|||+|++++||||++.. .+.++.|..|.+||+.|+|+..|+.|..++..
T Consensus        97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~-~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P  167 (230)
T KOG0721|consen   97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE-EGDEEFFEAIAKAYQALTDKKSRENWEKYGNP  167 (230)
T ss_pred             hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc-chhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence            457999999999999999999999999999999999875 57889999999999999999999999888643

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.53  E-value=8.9e-15  Score=135.40  Aligned_cols=85  Identities=29%  Similarity=0.450  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHhhcCCccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hhHHHHHHHHHHHHHHHhcCchH
Q 024973           97 EQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLP--LKAASEKFLKLREVYDVLSNEES  174 (259)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~--~~~a~~~f~~I~eAy~vLsdp~~  174 (259)
                      +.+.++..+-.-......+|||+||||.++|+..||-+|||+++.+||||...+.  .+.++++|..|..|-+||+||++
T Consensus       376 ~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~Ek  455 (504)
T KOG0624|consen  376 RAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEK  455 (504)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHH
Confidence            3344443333333445679999999999999999999999999999999997664  34699999999999999999999


Q ss_pred             HHHhhHH
Q 024973          175 RRFYDWT  181 (259)
Q Consensus       175 R~~YD~~  181 (259)
                      |+.||..
T Consensus       456 RrqFDnG  462 (504)
T KOG0624|consen  456 RRQFDNG  462 (504)
T ss_pred             HhhccCC
Confidence            9999985

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.1e-14  Score=136.92  Aligned_cols=87  Identities=34%  Similarity=0.464  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHHHHHhhcCCccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchH
Q 024973           95 EEEQKNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEES  174 (259)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~  174 (259)
                      +.+.++.+.+....+..+..++||.||||.++++..|||+|||++++.+|||++..+..+++.+|++|.+||.+|+||.+
T Consensus       353 s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~k  432 (486)
T KOG0550|consen  353 DCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMK  432 (486)
T ss_pred             ccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHH
Confidence            35677788888888888899999999999999999999999999999999999998878999999999999999999999


Q ss_pred             HHHhhHH
Q 024973          175 RRFYDWT  181 (259)
Q Consensus       175 R~~YD~~  181 (259)
                      |..||..
T Consensus       433 r~r~dsg  439 (486)
T KOG0550|consen  433 RVRFDSG  439 (486)
T ss_pred             Hhhcccc
Confidence            9999985

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.49  E-value=5.3e-14  Score=119.89  Aligned_cols=69  Identities=20%  Similarity=0.379  Sum_probs=60.4

Q ss_pred             cCccceeccCCC--CCHHHHHHHHHHHHHHhCCCCCCCch----hHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          115 DSHYQFLGISPS--ADLEEIKSAYRRLSKEYHPDTTSLPL----KAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       115 ~~~Y~iLgv~~~--as~~eIK~AYrkl~~~~HPDk~~~~~----~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      .|||+||||++.  ++..+|+++||++++++|||+.....    ..+.+.|..||+||+||+||.+|..|+..+.
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~   75 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH   75 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence            389999999996  68899999999999999999976431    2367899999999999999999999997654

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=3.5e-14  Score=134.73  Aligned_cols=73  Identities=29%  Similarity=0.504  Sum_probs=68.3

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHHh
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAAS  188 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~~  188 (259)
                      .+|+|.+|||+.+++.++||+.||++|...|||||..+  .|++.|+.++-||++|+|+.+|+.||..+..+...
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~--~A~Eafk~Lq~Afevig~~~kR~eYd~e~~kene~  306 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP--RAEEAFKKLQVAFEVIGDSVKRKEYDLELKKENEL  306 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh--hHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999965  99999999999999999999999999988666543

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.48  E-value=7.7e-14  Score=118.37  Aligned_cols=69  Identities=23%  Similarity=0.370  Sum_probs=60.1

Q ss_pred             cCccceeccCCC--CCHHHHHHHHHHHHHHhCCCCCCCch--hHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          115 DSHYQFLGISPS--ADLEEIKSAYRRLSKEYHPDTTSLPL--KAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       115 ~~~Y~iLgv~~~--as~~eIK~AYrkl~~~~HPDk~~~~~--~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      .|||+||||++.  ++..+|+++||++++++|||+.....  ..+...+..|++||+||+||.+|..|+..+.
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~   74 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ   74 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence            489999999996  78999999999999999999986531  2344578899999999999999999988764

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.42  E-value=4.8e-13  Score=114.53  Aligned_cols=70  Identities=24%  Similarity=0.414  Sum_probs=60.1

Q ss_pred             ccCccceeccCCC--CCHHHHHHHHHHHHHHhCCCCCCCch----hHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          114 SDSHYQFLGISPS--ADLEEIKSAYRRLSKEYHPDTTSLPL----KAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       114 ~~~~Y~iLgv~~~--as~~eIK~AYrkl~~~~HPDk~~~~~----~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      ..|||+||||++.  ++..+|+++||+|++++|||++....    ..+.+.+..||+||++|+||.+|..|+..+.
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~   80 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR   80 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence            4799999999995  68999999999999999999976431    1245567999999999999999999998664

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.41  E-value=6.9e-13  Score=113.26  Aligned_cols=70  Identities=30%  Similarity=0.540  Sum_probs=61.8

Q ss_pred             ccCccceeccCCC--CCHHHHHHHHHHHHHHhCCCCCCCc----hhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          114 SDSHYQFLGISPS--ADLEEIKSAYRRLSKEYHPDTTSLP----LKAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       114 ~~~~Y~iLgv~~~--as~~eIK~AYrkl~~~~HPDk~~~~----~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      ..+||++|||++.  .+..+|+++||+|++++|||++...    ...+.+.+..||+||+||+||.+|..|+..+.
T Consensus         3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~   78 (173)
T PRK00294          3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS   78 (173)
T ss_pred             CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            5799999999997  6789999999999999999997653    12367789999999999999999999998765

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.40  E-value=3.9e-13  Score=122.03  Aligned_cols=95  Identities=27%  Similarity=0.416  Sum_probs=74.7

Q ss_pred             CcCCCCCCc-----ccccccccchHHHHHHHHHHHHHhh----------------cCCccCccceeccCCCCCHHHHHHH
Q 024973           77 WIGGSSSSS-----HQTNQNFNAEEEQKNLLGEKFADLL----------------NNSSDSHYQFLGISPSADLEEIKSA  135 (259)
Q Consensus        77 ~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~Y~iLgv~~~as~~eIK~A  135 (259)
                      |.||.++..     ..++..+..+..++..+...+....                .....++|+||||++++|.+|||+|
T Consensus       141 ~ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ay~vLgv~~~as~~eIk~a  220 (267)
T PRK09430        141 FADGSLHPNERQVLYVIAEELGFSRFQFDQLLRMMQAGFRFQQQQGGGGYQQAQRGPTLEDAYKVLGVSESDDDQEIKRA  220 (267)
T ss_pred             HhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccccccccccccCCCcHHhHHHHcCCCCCCCHHHHHHH
Confidence            567777666     4677777788777777766544310                1233699999999999999999999


Q ss_pred             HHHHHHHhCCCCCCC---c---hhHHHHHHHHHHHHHHHhcC
Q 024973          136 YRRLSKEYHPDTTSL---P---LKAASEKFLKLREVYDVLSN  171 (259)
Q Consensus       136 Yrkl~~~~HPDk~~~---~---~~~a~~~f~~I~eAy~vLsd  171 (259)
                      ||+|+++||||++..   +   .+.++++|++|++||++|+.
T Consensus       221 Yr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        221 YRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999643   1   24689999999999999985

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=1.7e-13  Score=121.80  Aligned_cols=70  Identities=33%  Similarity=0.693  Sum_probs=64.9

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHH
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQ  184 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~  184 (259)
                      ...|.|+||||.++++..||++|||+|+++||||+++++  ++.+.|+.|.+||++|.|...|..||-.+..
T Consensus        31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~--e~k~~F~~iAtayeilkd~e~rt~ydyaldh  100 (329)
T KOG0722|consen   31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDP--ESKKLFVKIATAYEILKDNETRTQYDYALDH  100 (329)
T ss_pred             cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCc--hhhhhhhhhhcccccccchhhHHhHHHHhcC
Confidence            468999999999999999999999999999999999886  6779999999999999999999999987643

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=3e-13  Score=120.53  Aligned_cols=71  Identities=41%  Similarity=0.696  Sum_probs=64.6

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQ  184 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~  184 (259)
                      ..++|+||||.++|+.++|++||+++++++|||+++.+...+..+|++|.+||+||+|+.+|..||..+.+
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~   72 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEE   72 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcc
Confidence            46899999999999999999999999999999998876335666899999999999999999999999873

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.32  E-value=1.9e-12  Score=103.47  Aligned_cols=52  Identities=33%  Similarity=0.465  Sum_probs=47.3

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhc
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLS  170 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLs  170 (259)
                      ..++|+||||++++|.+|||++||+|++++|||+..     +.+.|++|++||++|.
T Consensus        64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG-----s~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG-----STYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHHHh
Confidence            368999999999999999999999999999999953     4478999999999995

>PHA02624 large T antigen; Provisional

Probab=99.20  E-value=1.1e-11  Score=122.65  Aligned_cols=60  Identities=32%  Similarity=0.492  Sum_probs=56.1

Q ss_pred             ccCccceeccCCCC--CHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHh
Q 024973          114 SDSHYQFLGISPSA--DLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFY  178 (259)
Q Consensus       114 ~~~~Y~iLgv~~~a--s~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~Y  178 (259)
                      ..++|++|||+++|  +.++||+|||+++++||||+++     +.++|++|++||++|+|+.+|..|
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG-----deekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG-----DEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence            46889999999999  9999999999999999999963     358999999999999999999999

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.03  E-value=6.3e-10  Score=95.09  Aligned_cols=69  Identities=17%  Similarity=0.245  Sum_probs=59.9

Q ss_pred             cCccceeccCCC--CCHHHHHHHHHHHHHHhCCCCCCCc----hhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          115 DSHYQFLGISPS--ADLEEIKSAYRRLSKEYHPDTTSLP----LKAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       115 ~~~Y~iLgv~~~--as~~eIK~AYrkl~~~~HPDk~~~~----~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      .|||++|||++.  .+...+++.|++|.+++|||+....    ...+.+.-..||+||.+|+||.+|..|=..+.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence            589999999996  8999999999999999999996543    23466788999999999999999999976654

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=98.99  E-value=3.8e-10  Score=107.39  Aligned_cols=72  Identities=26%  Similarity=0.438  Sum_probs=64.3

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCC----chhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSL----PLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~----~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      --|+|+||||+.+++..+||++||+|+.++||||.+.    ...+-++.+++|++||+.|+|...|..|-.+|...
T Consensus        97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd  172 (610)
T COG5407          97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD  172 (610)
T ss_pred             CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence            4699999999999999999999999999999999765    23568899999999999999999999998876543

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=1.5e-09  Score=93.86  Aligned_cols=78  Identities=27%  Similarity=0.382  Sum_probs=68.0

Q ss_pred             HHHHhhcC----CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhH
Q 024973          105 KFADLLNN----SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDW  180 (259)
Q Consensus       105 ~~~~~~~~----~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~  180 (259)
                      .+.+++..    -..|+|+||.|.++.+.++||+.||+|++..|||||+++.+.|...|.-|.+||..|-|+..|+.-+.
T Consensus        39 qIeRllrpgstyfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~  118 (250)
T KOG1150|consen   39 QIERLLRPGSTYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLD  118 (250)
T ss_pred             HHHHHhcCCccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            34555543    24799999999999999999999999999999999999988999999999999999999998877655


Q ss_pred             Hh
Q 024973          181 TL  182 (259)
Q Consensus       181 ~~  182 (259)
                      -.
T Consensus       119 ~y  120 (250)
T KOG1150|consen  119 VY  120 (250)
T ss_pred             HH
Confidence            43

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.98  E-value=1.4e-09  Score=91.63  Aligned_cols=57  Identities=26%  Similarity=0.398  Sum_probs=49.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCc----hhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          127 ADLEEIKSAYRRLSKEYHPDTTSLP----LKAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       127 as~~eIK~AYrkl~~~~HPDk~~~~----~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      .+..+|+++||++++++|||+....    ...+.+.+..||+||++|+||.+|..|+..+.
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~   63 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH   63 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            4778999999999999999995442    22477899999999999999999999999876

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=8.7e-10  Score=99.20  Aligned_cols=75  Identities=29%  Similarity=0.356  Sum_probs=63.8

Q ss_pred             HhhcCCccCccceeccCC---CCCHHHHHHHHHHHHHHhCCCCCCCc-hhHHHHHHHHHHHHHHHhcCchHHHHhhHHh
Q 024973          108 DLLNNSSDSHYQFLGISP---SADLEEIKSAYRRLSKEYHPDTTSLP-LKAASEKFLKLREVYDVLSNEESRRFYDWTL  182 (259)
Q Consensus       108 ~~~~~~~~~~Y~iLgv~~---~as~~eIK~AYrkl~~~~HPDk~~~~-~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~  182 (259)
                      ....+...|+|.+|||+.   -++..+|.++.++.+.+||||+.... ..+..+.|+.|+.||+||+|+.+|..||.--
T Consensus        36 d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d  114 (379)
T COG5269          36 DFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND  114 (379)
T ss_pred             hhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence            344566789999999987   58999999999999999999997221 1367789999999999999999999999854

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=9.7e-07  Score=78.20  Aligned_cols=56  Identities=30%  Similarity=0.641  Sum_probs=50.6

Q ss_pred             cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHH-HhcCc
Q 024973          115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYD-VLSNE  172 (259)
Q Consensus       115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~-vLsdp  172 (259)
                      ..+|.||||..+|+.++++.||.+|++++|||.....  ...++|.+|.+||. ||+..
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~--adaa~f~qideafrkvlq~~  103 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEE--ADAARFIQIDEAFRKVLQEK  103 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCcc--ccHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999998764  67789999999998 77753

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=1.2e-06  Score=90.67  Aligned_cols=53  Identities=26%  Similarity=0.550  Sum_probs=46.6

Q ss_pred             ccCccceeccCCC----CCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhc
Q 024973          114 SDSHYQFLGISPS----ADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLS  170 (259)
Q Consensus       114 ~~~~Y~iLgv~~~----as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLs  170 (259)
                      ..+.|+||.|+-+    -..+.||++|+||+.+||||||+    +..++|..+++||+.|+
T Consensus      1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP----EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP----EGREMFERVNKAYELLS 1336 (2235)
T ss_pred             hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc----hHHHHHHHHHHHHHHHH
Confidence            3578999999874    34589999999999999999997    66789999999999998

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=3.3e-06  Score=66.20  Aligned_cols=53  Identities=34%  Similarity=0.467  Sum_probs=46.4

Q ss_pred             cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCc
Q 024973          115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNE  172 (259)
Q Consensus       115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp  172 (259)
                      +..-.||||++.++.+.||.|+|++.+..|||+..++     ..-.+||||+++|...
T Consensus        56 ~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP-----YlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   56 REAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP-----YLASKINEAKDLLEGT  108 (112)
T ss_pred             HHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH-----HHHHHHHHHHHHHhcc
Confidence            3445699999999999999999999999999999776     5667899999999764

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.00038  Score=58.33  Aligned_cols=71  Identities=30%  Similarity=0.497  Sum_probs=57.2

Q ss_pred             CccCccceeccCC--CCCHHHHHHHHHHHHHHhCCCCCCCc----hhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          113 SSDSHYQFLGISP--SADLEEIKSAYRRLSKEYHPDTTSLP----LKAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       113 ~~~~~Y~iLgv~~--~as~~eIK~AYrkl~~~~HPDk~~~~----~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      ...+||.++|...  -...+.++.-|.-..++.|||+....    ..-+.+...++++||.+|.||.+|+.|=..+.
T Consensus         6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~   82 (168)
T KOG3192|consen    6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK   82 (168)
T ss_pred             hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            3578999998655  45777777799999999999995432    23578889999999999999999999966543

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.0025  Score=54.37  Aligned_cols=55  Identities=33%  Similarity=0.607  Sum_probs=48.0

Q ss_pred             cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hhHHHHHHHHHHHHHHHh
Q 024973          115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLP------LKAASEKFLKLREVYDVL  169 (259)
Q Consensus       115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~------~~~a~~~f~~I~eAy~vL  169 (259)
                      .+.|.+||+...+...+|+++|+++...+|||+....      .+.+.+++++|++||+-+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999984321      356889999999999753

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=96.13  E-value=0.0066  Score=59.33  Aligned_cols=45  Identities=24%  Similarity=0.318  Sum_probs=34.9

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCc------hhHHHHHHHHHHHHHHHhc
Q 024973          126 SADLEEIKSAYRRLSKEYHPDTTSLP------LKAASEKFLKLREVYDVLS  170 (259)
Q Consensus       126 ~as~~eIK~AYrkl~~~~HPDk~~~~------~~~a~~~f~~I~eAy~vLs  170 (259)
                      =.+.++||++|||.+|..||||.++-      .-.+++.|-.+++||+.-.
T Consensus       399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~  449 (453)
T KOG0431|consen  399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN  449 (453)
T ss_pred             ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence            36999999999999999999997653      1246777777777776543

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.45  E-value=0.012  Score=50.17  Aligned_cols=70  Identities=26%  Similarity=0.449  Sum_probs=53.0

Q ss_pred             ccceeccCCC--CCHHHHHHHHHHHHHHhCCCCCCCch----hHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHH
Q 024973          117 HYQFLGISPS--ADLEEIKSAYRRLSKEYHPDTTSLPL----KAASEKFLKLREVYDVLSNEESRRFYDWTLAQEA  186 (259)
Q Consensus       117 ~Y~iLgv~~~--as~~eIK~AYrkl~~~~HPDk~~~~~----~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~  186 (259)
                      +..+.|+.+.  ...+.++..|+.+.+.+|||+.....    ..+.+.+..++.||.+|.||-+|..|=..+..+.
T Consensus         3 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g~   78 (174)
T COG1076           3 GFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGL   78 (174)
T ss_pred             cccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccc
Confidence            3344444443  25566899999999999999976542    2355789999999999999999999977766444

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=94.20  E-value=0.084  Score=43.08  Aligned_cols=53  Identities=23%  Similarity=0.204  Sum_probs=39.2

Q ss_pred             CccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCch
Q 024973          116 SHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEE  173 (259)
Q Consensus       116 ~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~  173 (259)
                      ....||||++..+.++|.+.|.+|-...+|++.++     ...=.+|..|.+.|....
T Consensus        59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS-----fYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGS-----FYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC-----HHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999998854     355567888888887544

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PF13446 RPT: A repeated domain in UCH-protein

Probab=87.20  E-value=1.3  Score=30.97  Aligned_cols=27  Identities=30%  Similarity=0.475  Sum_probs=24.5

Q ss_pred             cCccceeccCCCCCHHHHHHHHHHHHH
Q 024973          115 DSHYQFLGISPSADLEEIKSAYRRLSK  141 (259)
Q Consensus       115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~  141 (259)
                      .+.|++|||+++.+.+.|-.+|+....
T Consensus         5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    5 EEAYEILGIDEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999999999877

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=85.07  E-value=0.99  Score=42.02  Aligned_cols=56  Identities=29%  Similarity=0.413  Sum_probs=44.4

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCC---chhHHHHHHHHHHHHHHHhcCchHHHHhhHHh
Q 024973          127 ADLEEIKSAYRRLSKEYHPDTTSL---PLKAASEKFLKLREVYDVLSNEESRRFYDWTL  182 (259)
Q Consensus       127 as~~eIK~AYrkl~~~~HPDk~~~---~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~  182 (259)
                      ++..+|..+|+..++..||++...   ......+.+++|.+||+||++..+|...|...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~   62 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD   62 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence            577889999999999999998741   11246678999999999999977666666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	259
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		3e-10
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		1e-09
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		2e-09
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		2e-09
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		4e-09
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		6e-09
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		2e-08
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		3e-08
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		4e-08
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		5e-08
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		8e-08
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		1e-07
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		1e-07
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		2e-07
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		2e-07
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		7e-07
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		5e-06
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		1e-05
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		2e-05
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		2e-05
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		4e-05
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		5e-05
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		5e-04
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		5e-04
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		6e-04

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 111 NNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLS 170
           + SS  +YQ LG+  +A  +EIK AY +L+K+YHPDT     K A EKF +L E Y+VLS
Sbjct: 3   SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPK-AKEKFSQLAEAYEVLS 61
Query: 171 NEESRRFYD 179
           +E  R+ YD
Sbjct: 62  DEVKRKQYD 70

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y  +G+ P+ DL+ IK+AYRRL+++YHPD +  P   A  +F ++ E ++VLS+E+ R 
Sbjct: 7   YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP--DAEARFKEVAEAWEVLSDEQRRA 64
Query: 177 FYD 179
            YD
Sbjct: 65  EYD 67

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 111 NNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLS 170
           + SS  +Y+ LG+S  A  E++K AYRRL+ ++HPD    P   A+E F  +   Y VLS
Sbjct: 3   SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAP--GATEAFKAIGTAYAVLS 60
Query: 171 NEESRRFYD 179
           N E R+ YD
Sbjct: 61  NPEKRKQYD 69

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y+ LG+S +A   +IK AY++L++E+HPD    P   A ++F+++ + Y++LSNEE R  
Sbjct: 20  YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDP--GAEDRFIQISKAYEILSNEEKRTN 77
Query: 178 YD 179
           YD
Sbjct: 78  YD 79

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y  LG+ P+ DL+ IK+AYRRL+++YHPD +      A  KF  L E ++VL +E+ R 
Sbjct: 30  YYAILGVQPTDDLKTIKTAYRRLARKYHPDVSK--ENDAEAKFKDLAEAWEVLKDEQRRA 87
Query: 177 FYD 179
            YD
Sbjct: 88  EYD 90

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +YQ LG++  A  EEIK AYRR +  YHPD    P   A EKF ++ E YDVLS+   R 
Sbjct: 5   YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP--GAEEKFKEIAEAYDVLSDPRKRE 62
Query: 177 FYD 179
            +D
Sbjct: 63  IFD 65

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 116 SHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESR 175
           ++Y  LG+ P+A  EE+K AYR+L+ +YHPD          EKF ++ + Y+VLS+ + R
Sbjct: 7   TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNP----NEGEKFKQISQAYEVLSDAKKR 62
Query: 176 RFYD 179
             YD
Sbjct: 63  ELYD 66

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+S +A+  EI+ AY+RL+ +YHPD      K A  KF +++E Y+VL++ + R 
Sbjct: 5   YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 177 FYD 179
            YD
Sbjct: 64  AYD 66

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+S +A+  EI+ AY+RL+ +YHPD      K A  KF +++E Y+VL++ + R 
Sbjct: 5   YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 177 FYD 179
            YD
Sbjct: 64  AYD 66

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+S +A+  EI+ AY+RL+ +YHPD      K A  KF +++E Y+VL++ + R 
Sbjct: 5   YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 177 FYD 179
            YD
Sbjct: 64  AYD 66

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 116 SHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESR 175
           ++Y+ LG+  SA  E+IK AYR+L+  +HPD      + A +KF  + E Y+VLS+ + R
Sbjct: 10  NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 176 RFYD 179
             YD
Sbjct: 70  SLYD 73

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPD--TTSLP---LKAASEKFLKLREVYDVLSNE 172
           Y  LG  PSA++ ++K  Y++L   YHPD  +T +P   ++   +KF+++ + + +L NE
Sbjct: 13  YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72
Query: 173 ESRRFYD 179
           E++R YD
Sbjct: 73  ETKREYD 79

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 116 SHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESR 175
            +Y  LG+ P A   E+K AYR+++ ++HPD         +E+F ++ + Y+VLS+E+ R
Sbjct: 9   GYYDVLGVKPDASDNELKKAYRKMALKFHPDKNP----DGAEQFKQISQAYEVLSDEKKR 64
Query: 176 RFYD 179
           + YD
Sbjct: 65  QIYD 68

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y  LG+SPSA+ +E+K  YR+ + +YHPD  +      +EKF ++ E +++L++ + R  
Sbjct: 11  YDLLGVSPSANEQELKKGYRKAALKYHPDKPT----GDTEKFKEISEAFEILNDPQKREI 66
Query: 178 YD 179
           YD
Sbjct: 67  YD 68

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAAS-----EKFLKLREVYDVLSNE 172
           Y  LG  PSA++ ++K  Y++L   YHPD  S  + A +     +KF+++ + + +L NE
Sbjct: 19  YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78
Query: 173 ESRRFYD 179
           E+++ YD
Sbjct: 79  ETKKKYD 85

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 116 SHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESR 175
           S+Y+ L +  SA  ++IK AYRR + ++HPD      + A +KF ++ E Y+VLS++  R
Sbjct: 3   SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 176 RFYD 179
             YD
Sbjct: 63  EIYD 66

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y  LG+  SA   +IK A+ +L+ +YHPD    P   A  KF ++ E Y+ LS+   R+
Sbjct: 9   YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSP--DAEAKFREIAEAYETLSDANRRK 66
Query: 177 FYDWTLAQEA 186
            YD TL   A
Sbjct: 67  EYD-TLGHSA 75

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ L +   A  E IK AYR+L+ ++HPD      + A  +F ++ E Y+VLS+ + R 
Sbjct: 11  YYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70
Query: 177 FYD 179
            YD
Sbjct: 71  IYD 73

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 110 LNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVL 169
           L+ S +S Y  LG+  +A  ++IK +YR+L+ +YHPD      +AA +KF ++   + +L
Sbjct: 12  LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAA-DKFKEINNAHAIL 70
Query: 170 SNEESRRFYD 179
           ++   R  YD
Sbjct: 71  TDATKRNIYD 80

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y  LG+  +A   +IK+AY R    YHPD  S   +AA E+F ++ + Y VL +   RR 
Sbjct: 20  YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAA-ERFTRISQAYVVLGSATLRRK 78
Query: 178 YDWTL 182
           YD  L
Sbjct: 79  YDRGL 83

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y  LG+S +A   EI+ A+++L+ + HPD       A  + FLK+   Y+VL +E+ R+ 
Sbjct: 24  YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGD-FLKINRAYEVLKDEDLRKK 82
Query: 178 YD 179
           YD
Sbjct: 83  YD 84

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y  LG+S +A   EI+ A+++L+ + HPD       A  + FLK+   Y+VL +E+ R+ 
Sbjct: 5   YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGD-FLKINRAYEVLKDEDLRKK 63
Query: 178 YD 179
           YD
Sbjct: 64  YD 65

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEE 173
           ++ +Y  LG    + +E+I + ++  + E HPD      KA  E F KL++  ++L+NEE
Sbjct: 19  TEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAV-ETFQKLQKAKEILTNEE 77
Query: 174 SRRFYD-WTLAQ 184
           SR  YD W  +Q
Sbjct: 78  SRARYDHWRRSQ 89

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 86  HQTNQNFNAEEEQKNLLGEKFADLLNNSSD-SHYQFLGISPSADLEEIKSAYRRLSKEYH 144
           ++T Q  N  ++Q     EK   LL  S    +Y+ LG+  +A  +EI  AYR+L+ ++H
Sbjct: 352 YETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 411
Query: 145 PDT--TSLPLKAASEKFLKLREVYDVLSNEESRRFYD 179
           PD        K A +KF+ +    +VLS+ E R+ +D
Sbjct: 412 PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXRKKFD 448

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 86  HQTNQNFNAEEEQKNLLGEKFADLLNNSSD-SHYQFLGISPSADLEEIKSAYRRLSKEYH 144
           ++T Q  N  ++Q     EK   LL  S    +Y+ LG+  +A  +EI  AYR+L+ ++H
Sbjct: 352 YETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 411
Query: 145 PDT--TSLPLKAASEKFLKLREVYDVLSNEESRRFYD 179
           PD        K A +KF+ +    +VLS+ E R+ +D
Sbjct: 412 PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 448

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	1e-19
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	8e-19
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	2e-18
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	3e-18
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	4e-18
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	5e-18
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	7e-18
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	1e-17
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	1e-17
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	2e-17
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	5e-17
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	6e-17
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	6e-17
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	1e-16
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	1e-16
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	1e-16
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	2e-16
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	1e-15
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	2e-15
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	2e-15
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	4e-15
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	6e-15
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	1e-14
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	4e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-12
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	2e-10
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	3e-10
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	6e-10
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	2e-09
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	3e-09
2guz_A	71	Mitochondrial import inner membrane translocase su	2e-08
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	8e-07
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	3e-06
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	1e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	5e-04

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 81.8 bits (202), Expect = 1e-19
 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPD-----TTSLPLKAASEKFLKLREVYDVLSN 171
            Y  LG  PSA++ ++K  Y++L   YHPD       +  ++   +KF+++ + + +L N
Sbjct: 12  WYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGN 71

Query: 172 EESRRFYDWTLAQEAAS 188
           EE++R YD    ++   
Sbjct: 72  EETKREYDLQRCEDDLR 88

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 83.1 bits (206), Expect = 8e-19
 Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 2/62 (3%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y  LG+ P+ DL+ IK+AYRRL+++YHPD +      A  KF  L E ++VL +E+ R  
Sbjct: 31  YAILGVQPTDDLKTIKTAYRRLARKYHPDVS--KENDAEAKFKDLAEAWEVLKDEQRRAE 88

Query: 178 YD 179
           YD
Sbjct: 89  YD 90

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 76.5 bits (189), Expect = 2e-18
 Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           YQ LG++  A  EEIK AYRR +  YHPD        A EKF ++ E YDVLS+   R  
Sbjct: 6   YQTLGLARGASDEEIKRAYRRQALRYHPDKN--KEPGAEEKFKEIAEAYDVLSDPRKREI 63

Query: 178 YD 179
           +D
Sbjct: 64  FD 65

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 76.3 bits (188), Expect = 3e-18
 Identities = 25/62 (40%), Positives = 42/62 (67%), Gaps = 2/62 (3%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y+ LG+S +A   +IK AY++L++E+HPD        A ++F+++ + Y++LSNEE R  
Sbjct: 20  YRVLGVSRTASQADIKKAYKKLAREWHPDKN--KDPGAEDRFIQISKAYEILSNEEKRTN 77

Query: 178 YD 179
           YD
Sbjct: 78  YD 79

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 75.9 bits (187), Expect = 4e-18
 Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPD-----TTSLPLKAASEKFLKLREVYDVLSNE 172
           Y  LG  PSA++ ++K  Y++L   YHPD       +  ++   +KF+++ + + +L NE
Sbjct: 19  YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 173 ESRRFYD 179
           E+++ YD
Sbjct: 79  ETKKKYD 85

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 78.8 bits (194), Expect = 5e-18
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y  LG+S +A   EI+ A+++L+ + HPD        A   FLK+   Y+VL +E+ R+ 
Sbjct: 5   YSLLGVSKTASSREIRQAFKKLALKLHPDKNP-NNPNAHGDFLKINRAYEVLKDEDLRKK 63

Query: 178 YD 179
           YD
Sbjct: 64  YD 65

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 75.0 bits (185), Expect = 7e-18
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y+ LG+S  A  E++K AYRRL+ ++HPD        A+E F  +   Y VLSN E R+ 
Sbjct: 10  YEILGVSRGASDEDLKKAYRRLALKFHPDKN--HAPGATEAFKAIGTAYAVLSNPEKRKQ 67

Query: 178 YD 179
           YD
Sbjct: 68  YD 69

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 74.7 bits (184), Expect = 1e-17
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y  LG+  SA   +IK A+ +L+ +YHPD        A  KF ++ E Y+ LS+   R+ 
Sbjct: 10  YDILGVPKSASERQIKKAFHKLAMKYHPDKN--KSPDAEAKFREIAEAYETLSDANRRKE 67

Query: 178 YD 179
           YD
Sbjct: 68  YD 69

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 75.1 bits (185), Expect = 1e-17
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y+ L +  SA  ++IK AYRR + ++HPD      + A +KF ++ E Y+VLS++  R  
Sbjct: 5   YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64

Query: 178 YD 179
           YD
Sbjct: 65  YD 66

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 74.8 bits (184), Expect = 2e-17
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y  LG+  +A   +IK+AY R    YHPD  S     A+E+F ++ + Y VL +   RR 
Sbjct: 20  YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS-AEAAERFTRISQAYVVLGSATLRRK 78

Query: 178 YD 179
           YD
Sbjct: 79  YD 80

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 73.4 bits (181), Expect = 5e-17
 Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y+ LG+S +A+  EI+ AY+RL+ +YHPD      K A  KF +++E Y+VL++ + R  
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKRAA 64

Query: 178 YD 179
           YD
Sbjct: 65  YD 66

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 72.7 bits (179), Expect = 6e-17
 Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y  LG+SPSA+ +E+K  YR+ + +YHPD         +EKF ++ E +++L++ + R  
Sbjct: 11  YDLLGVSPSANEQELKKGYRKAALKYHPDKP----TGDTEKFKEISEAFEILNDPQKREI 66

Query: 178 YD 179
           YD
Sbjct: 67  YD 68

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 72.3 bits (178), Expect = 6e-17
 Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           YQ LG+  +A  +EIK AY +L+K+YHPDT       A EKF +L E Y+VLS+E  R+ 
Sbjct: 10  YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD-PKAKEKFSQLAEAYEVLSDEVKRKQ 68

Query: 178 YD 179
           YD
Sbjct: 69  YD 70

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 72.9 bits (179), Expect = 1e-16
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y  LG    + +E+I + ++  + E HPD        A E F KL++  ++L+NEESR  
Sbjct: 23  YTLLGCDELSSVEQILAEFKVRALECHPDKHPEN-PKAVETFQKLQKAKEILTNEESRAR 81

Query: 178 YD 179
           YD
Sbjct: 82  YD 83

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 71.9 bits (177), Expect = 1e-16
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y+ L +   A  E IK AYR+L+ ++HPD      + A  +F ++ E Y+VLS+ + R  
Sbjct: 12  YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71

Query: 178 YD 179
           YD
Sbjct: 72  YD 73

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 72.0 bits (177), Expect = 1e-16
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y+ LG+  SA  E+IK AYR+L+  +HPD      + A +KF  + E Y+VLS+ + R  
Sbjct: 12  YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71

Query: 178 YD 179
           YD
Sbjct: 72  YD 73

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 71.1 bits (175), Expect = 2e-16
 Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
           Y  LG+ P A   E+K AYR+++ ++HPD         +E+F ++ + Y+VLS+E+ R+ 
Sbjct: 11  YDVLGVKPDASDNELKKAYRKMALKFHPDKN----PDGAEQFKQISQAYEVLSDEKKRQI 66

Query: 178 YD 179
           YD
Sbjct: 67  YD 68

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 69.4 bits (170), Expect = 1e-15
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
            +  LG+ P A  +E+  AYR+L+   HPD    P   + + F  +      L       
Sbjct: 29  SWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAP--GSEDAFKAVVNARTALLKNIKSG 86

Query: 177 FYD 179
              
Sbjct: 87  PSS 89

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 71.1 bits (174), Expect = 2e-15
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 117 HYQFLGISPSA--DLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEES 174
               LG+  SA  ++  ++ AY +  KE+HPD          EK  K+  +Y  + +   
Sbjct: 13  LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD-----KGGDEEKMKKMNTLYKKMEDGVK 67

Query: 175 RRFYD 179
                
Sbjct: 68  YAHQP 72

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 69.0 bits (169), Expect = 2e-15
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 106 FADLLNNSSDSHYQFLGISPSA-DLEEIKSAYRRLSKEYHPDTTSLP--LKAASEKFLKL 162
           FA  L    ++ Y  L ++    D +++  AYR L++++HPD          A E+F  +
Sbjct: 6   FAPELYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVI 65

Query: 163 REVYDVLSNEESRRFYD 179
              Y+ L ++E++  YD
Sbjct: 66  ATAYETLKDDEAKTNYD 82

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 68.6 bits (168), Expect = 4e-15
 Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNE 172
           S +S Y  LG+  +A  ++IK +YR+L+ +YHPD        A++KF ++   + +L++ 
Sbjct: 15  SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN-PEAADKFKEINNAHAILTDA 73

Query: 173 ESRRFYD 179
             R  YD
Sbjct: 74  TKRNIYD 80

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 73.3 bits (179), Expect = 6e-15
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 1/97 (1%)

Query: 109 LLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDV 168
           +      + Y  LG+S +A   EI+ A+++L+ + HPD        A   FLK+   Y+V
Sbjct: 15  IEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNP-NNPNAHGDFLKINRAYEV 73

Query: 169 LSNEESRRFYDWTLAQEAASRKAEKLKMKFEDPYDQA 205
           L +E+ R+ YD    +     +  + +      YD  
Sbjct: 74  LKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFG 110

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 67.5 bits (165), Expect = 1e-14
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 118 YQFLGISPSA--DLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESR 175
              LG+  SA  ++  ++ AY +  KE+HPD          EK  K+  +Y  + +    
Sbjct: 11  MDLLGLERSAWGNIPLMRKAYLKKCKEFHPD-----KGGDEEKMKKMNTLYKKMEDGVKY 65

Query: 176 RFYD 179
               
Sbjct: 66  AHQP 69

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 62.4 bits (152), Expect = 4e-13
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
              +  +      E K   RRL  ++HPD        A+E F  L+   + L   E + F
Sbjct: 19  TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQAF 75

Query: 178 YD 179
            D
Sbjct: 76  LD 77

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.6 bits (155), Expect = 7e-12
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 99  KNLLGEKFADLLNNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLP--LKAAS 156
           +  L +    L  +    +Y+ LG+  +A  +EI  AYR+L+ ++HPD        K A 
Sbjct: 366 REGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAE 425

Query: 157 EKFLKLREVYDVLSNEESRRFYD 179
           +KF+ +    +VLS+ E R+ +D
Sbjct: 426 KKFIDIAAAKEVLSDPEMRKKFD 448

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 56.9 bits (137), Expect = 3e-10
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 11/78 (14%)

Query: 114 SDSHYQFLGISPSA-------DLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVY 166
           + + Y+    +          D   ++  YR+L  ++HPD      +  SE+   L + Y
Sbjct: 10  TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMA----QQGSEQSSTLNQAY 65

Query: 167 DVLSNEESRRFYDWTLAQ 184
             L +   R  Y   L +
Sbjct: 66  HTLKDPLRRSQYMLKLLR 83

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 55.7 bits (134), Expect = 6e-10
 Identities = 13/88 (14%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 117 HYQFLGISPSA--DLEEIKSAYRRLSKEYHPD----TTSLPLKAASEKFLKLREVYDVLS 170
           ++   G+      D + +   ++ L ++YHPD     +     AA ++   + + +  L 
Sbjct: 3   YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLR 62

Query: 171 NEESRRFYDWTLAQEAASRKAEKLKMKF 198
           +   R  Y  +L     + +   ++   
Sbjct: 63  HPLMRAEYLLSLHGFDLASEQHTVRDTA 90

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 7/64 (10%)

Query: 118 YQFLGISPSA--DLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESR 175
            + L +      D   ++ AY++ S   HPD              +L  ++     E   
Sbjct: 14  LELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH-----ALMQELNSLWGTFKTEVYN 68

Query: 176 RFYD 179
              +
Sbjct: 69  LRMN 72

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 54.1 bits (129), Expect = 3e-09
 Identities = 30/182 (16%), Positives = 63/182 (34%), Gaps = 25/182 (13%)

Query: 22  GSLQQLTKEPRAATARTRSKILRVFASQKAGSNKSQRRAQPGVDTRIHWENEDEGWIGGS 81
           G L         ++ + R      F+S   G N+  + A      +   + ED     G 
Sbjct: 1   GPLGSPEFSMPHSSPQNRPNYNVSFSSMPGGQNERGKAAANLEGKQKAADFEDLLSGQGF 60

Query: 82  SSSSHQTNQNFNAEEEQKNLLGEK-----------------FADLLNN------SSDSHY 118
           ++   +      AE  ++ +  E                     LL+       + ++ +
Sbjct: 61  NAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKW 120

Query: 119 QFLGISPSADLEEIKSAYRRLSKEYHPD--TTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           + +G++     E++K  YR+     HPD  T     + A   F++L + +    N+  + 
Sbjct: 121 KPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKP 180

Query: 177 FY 178
            Y
Sbjct: 181 LY 182

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 118 YQFLGISPSA-DLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
            Q L ++ +    +++K  +R++    HPD    P  A      K+ E  D L      +
Sbjct: 17  LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLAT-----KINEAKDFLEKRGISK 71

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 47.4 bits (112), Expect = 8e-07
 Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 112 NSSDSHYQFLGISPS--ADLEEIKSAYRRLSKEYHPD----TTSLPLKAASEKFLKLREV 165
           + +  ++  +  + S   D  +++  Y++L +  HPD     +      + +    + + 
Sbjct: 40  DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDA 99

Query: 166 YDVLSNEESRRFYD 179
           Y  L    SR  Y 
Sbjct: 100 YKTLLAPLSRGLYL 113

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPD--TTSLPLKAASEKFLKLREVYDVLS 170
           + ++ ++ +G++     E++K  YR+     HP   T     + A   F++L + +    
Sbjct: 31  AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFE 90

Query: 171 NE 172
           N+
Sbjct: 91  NQ 92

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPD------TTSLPLKAASEKFLKLREVYD 167
           S S ++ + +    +   ++ +Y+R     HPD       ++     A + F  L+E +D
Sbjct: 39  SGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWD 98

Query: 168 VLSNE 172
             +  
Sbjct: 99  HFNTL 103

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)

Query: 130 EEIKSAYRRLSKEYHPDTT-SLPLKAASE 157
           + +K     L K Y  D+  +L +KA  E
Sbjct: 20  QALKKLQASL-KLYADDSAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.84
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.84
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.83
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.83
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.83
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.83
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.82
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.82
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.82
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.82
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.82
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.82
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.81
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.81
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.8
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.79
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.78
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.75
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.75
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.71
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.7
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.69
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.68
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.68
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.67
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.67
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.67
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.65
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.63
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.63
2guz_A	71	Mitochondrial import inner membrane translocase su	99.62
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.61
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.55
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.15
2guz_B	65	Mitochondrial import inner membrane translocase su	98.87
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	92.93

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.84  E-value=2.5e-21  Score=142.60  Aligned_cols=70  Identities=43%  Similarity=0.661  Sum_probs=65.2

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      ..+||+||||+++++.++||+|||+|++++|||+++.+  .+.+.|+.|++||++|+||.+|+.||..+.++
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   71 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP--GAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG   71 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT--THHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHHCCHHHHHHHHHHcccc
Confidence            46899999999999999999999999999999999865  78899999999999999999999999987544

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=2.5e-21  Score=144.13  Aligned_cols=71  Identities=32%  Similarity=0.540  Sum_probs=66.2

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      ...+||+||||+++++.++||+|||+|++++|||+++...+.+.++|++|++||+||+||.+|+.||..+.
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   77 (82)
T 2ej7_A            7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS   77 (82)
T ss_dssp             SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            35799999999999999999999999999999999987656789999999999999999999999999764

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.83  E-value=4.9e-21  Score=148.16  Aligned_cols=73  Identities=34%  Similarity=0.546  Sum_probs=66.1

Q ss_pred             cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHH
Q 024973          115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAA  187 (259)
Q Consensus       115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~  187 (259)
                      .|||+||||+++|+.++||+|||+|++++|||+++...+.+.++|++|++||+||+||.+|+.||..+..+..
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~   74 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT   74 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            5899999999999999999999999999999999876567899999999999999999999999998765544

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=6.9e-21  Score=143.92  Aligned_cols=72  Identities=38%  Similarity=0.594  Sum_probs=66.7

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHH
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEA  186 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~  186 (259)
                      ...+||+||||+++|+.++||+|||+|++++|||+++.+  .+.++|++|++||+||+||.+|+.||..+....
T Consensus         5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   76 (88)
T 2ctr_A            5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSP--DAEAKFREIAEAYETLSDANRRKEYDTLGHSAF   76 (88)
T ss_dssp             CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSH--HHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHH
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCh--HHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            467999999999999999999999999999999999864  789999999999999999999999999876544

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=4.8e-21  Score=141.66  Aligned_cols=70  Identities=47%  Similarity=0.667  Sum_probs=64.9

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      ...+||+||||+++++.++||+|||+|++++|||+++.. +.+.++|++|++||+||+||.+|+.||..+.
T Consensus         5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   74 (79)
T 2dn9_A            5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD-PKAKEKFSQLAEAYEVLSDEVKRKQYDAYGS   74 (79)
T ss_dssp             CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSC-TTHHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence            467999999999999999999999999999999999864 4788999999999999999999999999764

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=4.5e-21  Score=141.54  Aligned_cols=69  Identities=43%  Similarity=0.682  Sum_probs=64.9

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      ...+||+||||+++++.++||+|||+|++++|||++..+  .+.+.|++|++||+||+||.+|+.||..+.
T Consensus         5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   73 (78)
T 2ctp_A            5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAP--GATEAFKAIGTAYAVLSNPEKRKQYDQFGS   73 (78)
T ss_dssp             CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSH--HHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            467999999999999999999999999999999999864  789999999999999999999999999764

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=9.2e-21  Score=143.24  Aligned_cols=70  Identities=37%  Similarity=0.697  Sum_probs=65.4

Q ss_pred             CCccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          112 NSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       112 ~~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      ....+||+||||+++++.++||+|||+|++++|||+++..  .+.++|++|++||++|+||.+|..||..+.
T Consensus        14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   83 (88)
T 2cug_A           14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDP--GAEDRFIQISKAYEILSNEEKRTNYDHYGS   83 (88)
T ss_dssp             SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCST--THHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCh--hHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence            3468999999999999999999999999999999999874  789999999999999999999999999864

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=6.6e-21  Score=147.10  Aligned_cols=72  Identities=36%  Similarity=0.575  Sum_probs=65.8

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHH
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQE  185 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~  185 (259)
                      ...+||+||||+++|+.++||+|||+|+++||||+++.. +.+.++|++|++||+||+||.+|+.||..+...
T Consensus        15 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   86 (99)
T 2yua_A           15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS-AEAAERFTRISQAYVVLGSATLRRKYDRGLLSD   86 (99)
T ss_dssp             CSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSC-SHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCH
T ss_pred             CccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHhcccc
Confidence            467999999999999999999999999999999999754 478899999999999999999999999976443

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=1e-20  Score=149.19  Aligned_cols=73  Identities=30%  Similarity=0.466  Sum_probs=66.9

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHH
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEA  186 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~  186 (259)
                      ...|||+||||+++|+.++||+|||+|++++|||+++.. +.+.++|++|++||+||+||.+|+.||..+..+.
T Consensus        18 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~   90 (112)
T 2ctq_A           18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN-PKAVETFQKLQKAKEILTNEESRARYDHWRRSQM   90 (112)
T ss_dssp             CCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTC-STHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence            458999999999999999999999999999999999854 4789999999999999999999999999876543

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=7.9e-21  Score=144.55  Aligned_cols=72  Identities=36%  Similarity=0.603  Sum_probs=66.7

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHH
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQ  184 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~  184 (259)
                      ...+||+||||+++++.++||+|||+|++++|||+++...+.+.++|++|++||+||+||.+|+.||..+..
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   78 (92)
T 2dmx_A            7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCD   78 (92)
T ss_dssp             CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSC
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence            357999999999999999999999999999999999876568899999999999999999999999998643

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.82  E-value=9.2e-21  Score=138.27  Aligned_cols=66  Identities=35%  Similarity=0.675  Sum_probs=61.1

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      ..+||+||||+++++.++||+|||+|++++|||+++..    .+.|++|++||+||+||.+|+.||..|.
T Consensus         7 ~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG----AEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             CCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC----HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH----HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            57999999999999999999999999999999999743    5799999999999999999999999764

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=1.7e-20  Score=147.37  Aligned_cols=76  Identities=29%  Similarity=0.515  Sum_probs=68.9

Q ss_pred             cCCccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHH
Q 024973          111 NNSSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAA  187 (259)
Q Consensus       111 ~~~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~  187 (259)
                      .....+||+||||+++|+.++||+|||+|++++|||+++.. +.+.++|++|++||+||+||.+|+.||..+..+..
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~   88 (109)
T 2ctw_A           13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN-PEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY   88 (109)
T ss_dssp             TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTC-HHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence            34568999999999999999999999999999999999864 47899999999999999999999999998876554

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.81  E-value=8.7e-21  Score=144.56  Aligned_cols=71  Identities=31%  Similarity=0.657  Sum_probs=64.8

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLP-----LKAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~-----~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      ...+||+||||+++|+.++||+|||+|+++||||+++..     .+.+.++|++|++||+||+||.+|+.||..+.
T Consensus        14 ~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            357999999999999999999999999999999998742     24788999999999999999999999999864

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.81  E-value=6.3e-22  Score=164.25  Aligned_cols=133  Identities=23%  Similarity=0.402  Sum_probs=90.8

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCch-----hHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHH
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPL-----KAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAA  187 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~-----~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~  187 (259)
                      ...|||+||||+++++.++||+|||+|++++||||++...     +.+.++|++|++||+||+||.+|+.||..+.....
T Consensus         8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~~   87 (155)
T 2l6l_A            8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDDL   87 (155)
T ss_dssp             CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHHHH
T ss_pred             CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchhhc
Confidence            4579999999999999999999999999999999987642     24789999999999999999999999998765443


Q ss_pred             hhHHHhhhccc-CChhHHHhcccCCCchhhhhccCcccccchhhhhhhhhhhHHHHHHHHHHHHHHhh
Q 024973          188 SRKAEKLKMKF-EDPYDQALKNYGSIPDMVDRLGGRNMELSDQAMTALTFDVVVIIFTFCCIIYALYF  254 (259)
Q Consensus       188 ~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~gg~~~~~~~~~~~~~~~~~~i~v~~~~c~l~i~~~  254 (259)
                      ... ......+ .+.++  +..........|+||+......+....+      ++|.|..|++++.++
T Consensus        88 ~~~-~~~~~~~~~~~m~--~~e~~~~f~~~CrCG~~f~i~~~~l~~~------~~v~C~sCSl~~~v~  146 (155)
T 2l6l_A           88 RNV-GPVDAQVYLEEMS--WNEGDHSFYLSCRCGGKYSVSKDEAEEV------SLISCDTCSLIIELL  146 (155)
T ss_dssp             HTT-CSSSEEEETTTSE--EETTTTEEEEECSSSCEEEEETTHHHHC------CEEECSSSSCEEEEE
T ss_pred             ccc-ccccceeeHHHhc--cccCCcEEEEcCCCCCeEEecHHHhCCC------CEEECCCCceEEEEE
Confidence            221 0000000 00000  0001122345578887755443322211      467888888776554

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.80  E-value=3.2e-20  Score=141.47  Aligned_cols=71  Identities=35%  Similarity=0.655  Sum_probs=64.8

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHHh
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAAS  188 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~~  188 (259)
                      ..+||+||||+++++.++||+|||+|++++|||+++..    .++|++|++||+||+||.+|+.||..+......
T Consensus         7 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~   77 (92)
T 2o37_A            7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD----TEKFKEISEAFEILNDPQKREIYDQYGLEAARS   77 (92)
T ss_dssp             CCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC----HHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh----HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence            57999999999999999999999999999999999753    469999999999999999999999998766543

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.79  E-value=1.4e-20  Score=146.14  Aligned_cols=72  Identities=36%  Similarity=0.619  Sum_probs=66.0

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEA  186 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~  186 (259)
                      ..+||+||||+++|+.++||+|||+|++++|||+++.. +.+.++|++|++||+||+||.+|+.||..+....
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   73 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF   73 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTT-CTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhh
Confidence            46899999999999999999999999999999999854 4788999999999999999999999999876543

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.78  E-value=1.5e-19  Score=141.56  Aligned_cols=71  Identities=27%  Similarity=0.520  Sum_probs=65.3

Q ss_pred             CccCccceeccCCCC-CHHHHHHHHHHHHHHhCCCCCCC--chhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          113 SSDSHYQFLGISPSA-DLEEIKSAYRRLSKEYHPDTTSL--PLKAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~a-s~~eIK~AYrkl~~~~HPDk~~~--~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      ...+||+||||+++| +.++||+|||+|++++|||+++.  ..+.+.++|++|++||+||+||.+|+.||..+.
T Consensus        13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~   86 (109)
T 2qsa_A           13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD   86 (109)
T ss_dssp             TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            468999999999999 99999999999999999999975  235789999999999999999999999999874

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=1e-18  Score=132.72  Aligned_cols=61  Identities=26%  Similarity=0.500  Sum_probs=57.7

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR  176 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~  176 (259)
                      ..+||+||||+++|+.++||+|||+|+++||||+++..  .+.++|++|++||++|+||.+|.
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~--~~~~~f~~i~~Ay~~L~d~~~R~   86 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAP--GSEDAFKAVVNARTALLKNIKSG   86 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCT--THHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHHCCccccc
Confidence            58999999999999999999999999999999999864  78899999999999999999875

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.75  E-value=8.1e-19  Score=150.03  Aligned_cols=71  Identities=32%  Similarity=0.574  Sum_probs=65.6

Q ss_pred             cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHH
Q 024973          115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEA  186 (259)
Q Consensus       115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~  186 (259)
                      .|||+||||+++|+.++||+|||+|++++|||+++.. +.+.++|++|++||++|+||.+|+.||..+..+.
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~-~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~   72 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL   72 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTC-TTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccc
Confidence            5899999999999999999999999999999999754 4788999999999999999999999999876554

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.70  E-value=3.4e-18  Score=129.55  Aligned_cols=64  Identities=20%  Similarity=0.164  Sum_probs=58.4

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHH
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR  176 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~  176 (259)
                      ...++|+||||+++|+.+|||+|||+|+++||||+++...+.++++|++|++||+||+|...|.
T Consensus        14 ~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~   77 (88)
T 1iur_A           14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD   77 (88)
T ss_dssp             CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             cHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Confidence            3468999999999999999999999999999999998865678999999999999999987663

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.69  E-value=1.4e-17  Score=140.64  Aligned_cols=68  Identities=19%  Similarity=0.363  Sum_probs=62.1

Q ss_pred             CccceeccCCCC--CHHHHHHHHHHHHHHhCCCCCCCch----hHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          116 SHYQFLGISPSA--DLEEIKSAYRRLSKEYHPDTTSLPL----KAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       116 ~~Y~iLgv~~~a--s~~eIK~AYrkl~~~~HPDk~~~~~----~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      |||+||||++++  +.++||++||+|+++||||+++...    ..+.++|+.|++||+||+||.+|..||..+.
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~   75 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence            799999999999  9999999999999999999987642    2467899999999999999999999999865

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.68  E-value=2.1e-18  Score=159.36  Aligned_cols=69  Identities=41%  Similarity=0.714  Sum_probs=0.0

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQ  184 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~  184 (259)
                      .+|||+||||+++||.+|||+|||+|+++||||+++.+  .++++|++|++||+||+||.+|+.||..+..
T Consensus        27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~--~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~   95 (329)
T 3lz8_A           27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN--DAEAKFKDLAEAWEVLKDEQRRAEYDQLWQH   95 (329)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCCh--HHHHHHHHHHHHHHHhhhhhhhcccchhhcc
Confidence            47999999999999999999999999999999999865  7899999999999999999999999998543

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.68  E-value=1.1e-17  Score=124.14  Aligned_cols=61  Identities=16%  Similarity=0.303  Sum_probs=55.4

Q ss_pred             ccCccceeccCCC--CCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhh
Q 024973          114 SDSHYQFLGISPS--ADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYD  179 (259)
Q Consensus       114 ~~~~Y~iLgv~~~--as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD  179 (259)
                      ..++|+||||+++  ++.++||+|||+|++++|||+++.     .++|++|++||++|+|+.+|..++
T Consensus        10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~-----~~~f~~i~~AYe~L~~~~~r~~~~   72 (79)
T 1faf_A           10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS-----HALMQELNSLWGTFKTEVYNLRMN   72 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC-----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----HHHHHHHHHHHHHHhhHHHHHHHh
Confidence            3578999999999  999999999999999999999853     479999999999999999998743

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.67  E-value=2e-18  Score=136.74  Aligned_cols=64  Identities=25%  Similarity=0.263  Sum_probs=59.0

Q ss_pred             ccCccceeccCCCCCH--HHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHh
Q 024973          114 SDSHYQFLGISPSADL--EEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTL  182 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~--~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~  182 (259)
                      ..++|+||||+++|+.  ++||+|||+|++++|||+++.     .++|++|++||+||+||.+|+.||..+
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~-----~e~f~~I~~AYevL~d~~~R~~~~~~~   72 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVKYAHQPDFG   72 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT-----TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc-----HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence            3689999999999999  999999999999999999875     379999999999999999999999653

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.67  E-value=4.3e-18  Score=144.01  Aligned_cols=65  Identities=25%  Similarity=0.295  Sum_probs=57.6

Q ss_pred             ccCccceeccCCCCC--HHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          114 SDSHYQFLGISPSAD--LEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as--~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      ..++|+||||+++|+  .++||+|||++++++|||++++.     ++|++|++||+||+||.+|+.||..+.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~-----e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-----EKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC-----TTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH-----HHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            468999999999998  69999999999999999998653     799999999999999999999999864

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.67  E-value=4.6e-17  Score=141.34  Aligned_cols=70  Identities=20%  Similarity=0.312  Sum_probs=62.3

Q ss_pred             ccCccceeccCCC--CCHHHHHHHHHHHHHHhCCCCCCCc----hhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          114 SDSHYQFLGISPS--ADLEEIKSAYRRLSKEYHPDTTSLP----LKAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       114 ~~~~Y~iLgv~~~--as~~eIK~AYrkl~~~~HPDk~~~~----~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      ..|||+||||+++  ++.++||++||+|++++|||+++..    ...+.++|++|++||+||+||.+|+.||..+.
T Consensus        42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~  117 (207)
T 3bvo_A           42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH  117 (207)
T ss_dssp             TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence            5799999999986  7999999999999999999998753    12467899999999999999999999998654

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.65  E-value=3e-17  Score=139.65  Aligned_cols=65  Identities=20%  Similarity=0.416  Sum_probs=59.2

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchh--HHHHHHHHHHHHHHHhcCchHHHHh
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLK--AASEKFLKLREVYDVLSNEESRRFY  178 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~--~a~~~f~~I~eAy~vLsdp~~R~~Y  178 (259)
                      ..++|+||||+++|+.++||+|||+|++++||||++....  .++++|++|++||+||+|+.+|+.|
T Consensus       116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            3699999999999999999999999999999999876522  3889999999999999999999876

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.63  E-value=8e-17  Score=122.95  Aligned_cols=57  Identities=19%  Similarity=0.373  Sum_probs=52.0

Q ss_pred             cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCch--hHHHHHHHHHHHHHHHhcC
Q 024973          115 DSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPL--KAASEKFLKLREVYDVLSN  171 (259)
Q Consensus       115 ~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~--~~a~~~f~~I~eAy~vLsd  171 (259)
                      .++|++|||+++||.++||+|||+++++|||||+++..  ..++++|+.|++||+||.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999998652  2488999999999999975

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.63  E-value=1.1e-16  Score=136.29  Aligned_cols=67  Identities=24%  Similarity=0.440  Sum_probs=61.0

Q ss_pred             CCccCcccee------ccCC-CCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHh
Q 024973          112 NSSDSHYQFL------GISP-SADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTL  182 (259)
Q Consensus       112 ~~~~~~Y~iL------gv~~-~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~  182 (259)
                      ....|||+||      |+++ +++.++||+|||+|++++|||+++.    +.++|++|++||+||+||.+|..||..+
T Consensus         8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~----a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ----GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS----CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc----HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            3468999999      4665 8999999999999999999999975    5679999999999999999999999987

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.62  E-value=9.5e-17  Score=116.66  Aligned_cols=56  Identities=20%  Similarity=0.261  Sum_probs=51.0

Q ss_pred             cCccceeccCC-CCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHH
Q 024973          115 DSHYQFLGISP-SADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESR  175 (259)
Q Consensus       115 ~~~Y~iLgv~~-~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R  175 (259)
                      .++|+||||++ +++.++||+|||+|++++|||++++     .+.|++|++||++|+|+..|
T Consensus        14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~-----~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS-----PFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC-----HHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHHHhhhhhc
Confidence            58899999999 7999999999999999999999743     36999999999999998765

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.61  E-value=1.4e-16  Score=124.63  Aligned_cols=60  Identities=18%  Similarity=0.201  Sum_probs=52.7

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hhHHHHHHHHHHHHHHHhcCch
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLP------LKAASEKFLKLREVYDVLSNEE  173 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~------~~~a~~~f~~I~eAy~vLsdp~  173 (259)
                      ...+||+|||++. ||.++||+|||++++++||||++..      ...++++|++|++||+||+|+.
T Consensus        39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            3579999999996 9999999999999999999997631      1247899999999999999985

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.55  E-value=4.4e-16  Score=156.44  Aligned_cols=75  Identities=31%  Similarity=0.547  Sum_probs=40.8

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHHHh
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEAAS  188 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~~~  188 (259)
                      ...|||+||||+++||.++||+|||+|++++|||+++.. +.+.++|++|++||++|+||.+|+.||..+..+...
T Consensus        19 ~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~-~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~   93 (780)
T 3apo_A           19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED   93 (780)
T ss_dssp             ----CHHHHTCCTTCCHHHHHHHHCC------------------------CTHHHHHHSHHHHHHHTTC-------
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHHHHHHHcChHHHHHHHhhccccccc
Confidence            467999999999999999999999999999999999754 478899999999999999999999999988765543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.15  E-value=3.3e-11  Score=109.56  Aligned_cols=68  Identities=34%  Similarity=0.553  Sum_probs=58.4

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCch--hHHHHHHHHHHHHHHHhcCchHHHHhhH
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPL--KAASEKFLKLREVYDVLSNEESRRFYDW  180 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~--~~a~~~f~~I~eAy~vLsdp~~R~~YD~  180 (259)
                      ...++|.+||+.+.++.++|+++|+++++++|||+.+.+.  +.+.++|+.|++||++|+||++|..||.
T Consensus       380 ~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          380 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             HSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             cchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            3569999999999999999999999999999999998763  5689999999999999999999999997

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.87  E-value=1.4e-09  Score=77.56  Aligned_cols=53  Identities=17%  Similarity=0.167  Sum_probs=46.9

Q ss_pred             cCccceeccCCC---CCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCc
Q 024973          115 DSHYQFLGISPS---ADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNE  172 (259)
Q Consensus       115 ~~~Y~iLgv~~~---as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp  172 (259)
                      ...|.||||+++   ++.++|+++||+|...+|||+..+     .....+|++|+++|...
T Consensus         4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS-----~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS-----FYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC-----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHHHHH
Confidence            356899999999   999999999999999999999754     47889999999999743

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=92.93  E-value=0.12  Score=50.79  Aligned_cols=59  Identities=15%  Similarity=0.199  Sum_probs=44.2

Q ss_pred             HHHHHHHHhhcCCccCccceeccCCCCCH--HHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Q 024973          101 LLGEKFADLLNNSSDSHYQFLGISPSADL--EEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDV  168 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~Y~iLgv~~~as~--~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~v  168 (259)
                      .+.+....++....++||.+||++.+...  .+|++|||++++..+++         .+++..|..|+.|
T Consensus       615 ~ll~~~l~~~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~---------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          615 LVLGGALDWLKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ---------RHRYTLVDMANKV  675 (681)
T ss_dssp             HHHHHHHHHHTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH---------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHhccc
Confidence            33344455666777889999999776544  67999999999976655         3688888888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	259
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	4e-13
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	5e-12
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	3e-11
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	4e-11
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	9e-10
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-09
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	2e-09
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	9e-07

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.5 bits (149), Expect = 4e-13
 Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPL--KAASEKFLKLREVYDVLS 170
           + ++ ++ +G++     E++K  YR+     HPD  +     + A   F++L + +    
Sbjct: 31  AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 90

Query: 171 NEESRRFY 178
           N+  +  Y
Sbjct: 91  NQGQKPLY 98

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.5 bits (141), Expect = 5e-12
 Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHP-----DTTSLPLKAASEKFLKLREVYDVLSN 171
            Y  LG  PSA++ ++K  Y++L   YHP     D  +  ++   +KF+++ + + +L N
Sbjct: 18  WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77

Query: 172 EESRRFYD 179
           EE+++ YD
Sbjct: 78  EETKKKYD 85

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 55.8 bits (134), Expect = 3e-11
 Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 117 HYQFLGISPSA--DLEEIKSAYRRLSKEYHPDTTSLPLKAA----SEKFLKLREVYDVLS 170
           ++   G+      D + +   ++ L ++YHPD  +   +A      ++   + + +  L 
Sbjct: 3   YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLR 62

Query: 171 NEESRRFYDWTL 182
           +   R  Y  +L
Sbjct: 63  HPLMRAEYLLSL 74

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 55.4 bits (133), Expect = 4e-11
 Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +Y+ LG+S +A+  EI+ AY+RL+ +YHPD      K A  KF +++E Y+VL++ + R 
Sbjct: 5   YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKRA 63

Query: 177 FYD 179
            YD
Sbjct: 64  AYD 66

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 9e-10
 Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 117 HYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRR 176
           +YQ LG++  A  EEIK AYRR +  YHPD    P   A EKF ++ E YDVLS+   R 
Sbjct: 5   YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP--GAEEKFKEIAEAYDVLSDPRKRE 62

Query: 177 FYD 179
            +D
Sbjct: 63  IFD 65

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 51.2 bits (122), Expect = 1e-09
 Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 7/68 (10%)

Query: 114 SDSHYQFLGISPSA--DLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSN 171
            +   + L +      D   ++ AY++ S   HPD        +     +L  ++     
Sbjct: 10  KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG-----SHALMQELNSLWGTFKT 64

Query: 172 EESRRFYD 179
           E      +
Sbjct: 65  EVYNLRMN 72

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (122), Expect = 2e-09
 Identities = 13/62 (20%), Positives = 21/62 (33%)

Query: 118 YQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRF 177
              +  +      E K   RRL  ++HPD        A+E F  L+   + L  +     
Sbjct: 19  TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ 78

Query: 178 YD 179
             
Sbjct: 79  NA 80

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 44.4 bits (104), Expect = 9e-07
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 114 SDSHYQFLGISPSA--DLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSN 171
           S      LG+  SA  ++  ++ AY +  KE+HPD          EK  K+  +Y  + +
Sbjct: 7   SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-----EKMKKMNTLYKKMED 61

Query: 172 EESRRFYDWTLAQEAASRKAEKLKMKFEDPYDQ 204
                          A+        ++E  ++ 
Sbjct: 62  GVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNA 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.88
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.83
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.79
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.73
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.71
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.66
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.63

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=2.1e-23  Score=152.03  Aligned_cols=70  Identities=37%  Similarity=0.647  Sum_probs=64.8

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQ  184 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~  184 (259)
                      .+|||+||||+++||.+|||+|||++++++|||+++.+ +.+.+.|++|++||+||+||.+|+.||.+|..
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   71 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA   71 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTT-CHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhCcc
Confidence            47999999999999999999999999999999999865 46788999999999999999999999998643

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.4e-22  Score=145.01  Aligned_cols=71  Identities=42%  Similarity=0.646  Sum_probs=65.8

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhHHHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLAQEA  186 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~~~~  186 (259)
                      .+|||+||||+++||.++||+||+++++++|||++..+  .+.++|+.|++||+||+||.+|+.||+.+.++.
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~--~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~   72 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP--GAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT--THHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccch--hHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            47999999999999999999999999999999999875  788999999999999999999999999876543

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.9e-21  Score=147.41  Aligned_cols=70  Identities=31%  Similarity=0.661  Sum_probs=64.0

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hhHHHHHHHHHHHHHHHhcCchHHHHhhHHh
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLP-----LKAASEKFLKLREVYDVLSNEESRRFYDWTL  182 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~-----~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~  182 (259)
                      ..+|||+||||+++|+.++||+||++|+++|||||+...     .+.+.++|+.|++||+||+||.+|+.||..+
T Consensus        14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~   88 (94)
T d1wjza_          14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcc
Confidence            457999999999999999999999999999999998654     2468899999999999999999999999874

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.79  E-value=1e-21  Score=153.59  Aligned_cols=65  Identities=25%  Similarity=0.333  Sum_probs=59.8

Q ss_pred             ccCccceeccCCCC--CHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHhH
Q 024973          114 SDSHYQFLGISPSA--DLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTLA  183 (259)
Q Consensus       114 ~~~~Y~iLgv~~~a--s~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~~  183 (259)
                      ..++|+||||+++|  +.++||+|||+||++|||||++..     ++|++|++||+||+|+.+|+.||..+.
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~-----e~F~~I~~AY~vLsd~~kR~~YD~~~~   73 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-----EKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT-----TTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhH-----HHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            57899999999999  788999999999999999999754     589999999999999999999997653

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.4e-18  Score=126.15  Aligned_cols=67  Identities=19%  Similarity=0.380  Sum_probs=59.3

Q ss_pred             CccceeccCCC--CCHHHHHHHHHHHHHHhCCCCCCCc----hhHHHHHHHHHHHHHHHhcCchHHHHhhHHh
Q 024973          116 SHYQFLGISPS--ADLEEIKSAYRRLSKEYHPDTTSLP----LKAASEKFLKLREVYDVLSNEESRRFYDWTL  182 (259)
Q Consensus       116 ~~Y~iLgv~~~--as~~eIK~AYrkl~~~~HPDk~~~~----~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~  182 (259)
                      |||+||||+++  ++.++||+|||++++++|||+....    .+.+.+.|+.|++||+||+||.+|+.|+..+
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l   74 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            79999999985  4589999999999999999997543    2347889999999999999999999998765

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.71  E-value=1.3e-18  Score=127.65  Aligned_cols=64  Identities=16%  Similarity=0.248  Sum_probs=58.4

Q ss_pred             ccCccceeccCCCC--CHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHHh
Q 024973          114 SDSHYQFLGISPSA--DLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWTL  182 (259)
Q Consensus       114 ~~~~Y~iLgv~~~a--s~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~~  182 (259)
                      ..++|+||||++++  +.++||+|||++++++|||+++.     .++|++|++||++|+|+.+|..||..+
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~-----~e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS-----HALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC-----HHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC-----HHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            46899999999988  99999999999999999999854     368999999999999999999998753

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.4e-18  Score=126.26  Aligned_cols=65  Identities=23%  Similarity=0.243  Sum_probs=58.4

Q ss_pred             ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhcCchHHHHhhHH
Q 024973          114 SDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPLKAASEKFLKLREVYDVLSNEESRRFYDWT  181 (259)
Q Consensus       114 ~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~~~a~~~f~~I~eAy~vLsdp~~R~~YD~~  181 (259)
                      .+++|+||||+.+||.+|||+|||+|+++||||+++++.+.+.++|+.|++||++|++   +..||..
T Consensus        15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~   79 (88)
T d1iura_          15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQN   79 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSSS
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhcc
Confidence            3689999999999999999999999999999999998767899999999999999974   5556554

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.63  E-value=2.2e-17  Score=125.69  Aligned_cols=66  Identities=20%  Similarity=0.433  Sum_probs=59.4

Q ss_pred             CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCCCCch--hHHHHHHHHHHHHHHHhcCchHHHHh
Q 024973          113 SSDSHYQFLGISPSADLEEIKSAYRRLSKEYHPDTTSLPL--KAASEKFLKLREVYDVLSNEESRRFY  178 (259)
Q Consensus       113 ~~~~~Y~iLgv~~~as~~eIK~AYrkl~~~~HPDk~~~~~--~~a~~~f~~I~eAy~vLsdp~~R~~Y  178 (259)
                      ...++|++|||...+|.++||+|||++++.+|||+++...  ..+.+.|+.|++||++|+||.+|+.|
T Consensus        31 ~~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          31 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TTCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            3467899999999999999999999999999999977642  35889999999999999999999877