Citrus Sinensis ID: 024974

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MSKIASTSLAPCHHGDRWRVKLMQHHQQPQWQCHATTKSEKRSSSQPLMVKNQMAVKPATYSSRIATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMKQKVNGSLLQDYSKFKRESLNGVRHQTR
Secondary Structure (PSIPRED)
cccccccEEEcccccccHHHHHHHccccccccccccccccccccccHHHHccccccccEEEEEEEEEEEcccccccccHHHHHcccccEEEEEcccccccccccccccEEEEEEccEEEEEEEEEEEEEEEEEEcccccccccccccccEEEEEEEEEEEEcccccccccccEEEEEEEEEEEEccccEEEEEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHEEcccccccccHHHHHHHHcccccccccEEccccccccccEEEccccccccEEEEEEEEEEccccccccccHHHHHHcccHEEEEEcccccHHcEEccccEEEEEEEEEEEEEEEEEEEEEEEEEEccccccccccccccccEEEEEEEEEEEEcccccEEccccEEEEEEEEEEEcccccccEEEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcccc
Coil and Loop (DISEMBL)
mskiastslapchhgdrWRVKLmqhhqqpqwqchattksekrsssqplmvknqmavkpatyssriatdiplyespgalfdqyledkprvfnamfpdnkqrsqrLNEDEWRIQMLPIQFIFLTVkpvidmrlrcktggkdyppevpqDITKVLELDITRWELRDlenvikpsqfslsvkgalysdrrgtrsrlkgqlemnisfvlppvlalipddvrRNVAESVLTRLIEDMKQKVNGSLLQDYSKFKreslngvrhqtr
Flexible Loop (DISEMBL)
mskiastslapchhGDRWRVKLMQHHQQPQWQCHattksekrsssqplmvknqmavkpaTYSSRIATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKtggkdyppevpqdITKVLELDITRWELRDlenvikpsqfslsvkgalysdrrGTRSRLKGQLEMNISFVlppvlalipddVRRNVAESVLTRLIEDMkqkvngsllqdyskfkreslngvrhqtr
Low Complexity Region (SEG)
MSKIASTSLAPCHHGDRWRVKLMQHHQQPQWQCHATTKSEKRSSSQPLMVKNQMAVKPATYSSRIATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMKQKVNGSLLQDYSKFKRESLNGVRHQTR
Disordered region (IsUnstruct)
*************HGDRWRVKLM*************************************YSSRIATDIPLYESPGALFDQYLEDKPRVFNAMF***********EDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDR*****RLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMKQ**************************
Disordered Region (DISOPRED)
*********APCHHG*************************************************************ALFDQYLEDKPRVFNAMFPDNK****RLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMKQKVNGSLLQDYSKFK************
Disordered Region (DISEMBL)
MSKIASTSLAPCHHGDRWRVKL*************************LMVKNQMAVKPATYSSRIATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMKQKVNGSLLQDYSKFKRE**********
Disordered Region (DISPRO)
*S**ASTSLAPCHHGDRWRVKLMQHHQQPQWQCHATTKSE*RS*SQPLMVKNQMAVKPATYSSRIATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMKQKVNGSLLQDYSKFKRESLN*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKIASTSLAPCHHGDRWRVKLMQHHQQPQWQCHATTKSEKRSSSQPLMVKNQMAVKPATYSSRIATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMKQKVNGSLLQDYSKFKRESLNGVRHQTR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
P31525	192	Uncharacterized protein S	yes	no	0.652	0.880	0.228	0.0003

>sp|P31525|Y1590_SYNP2 Uncharacterized protein SYNPCC7002_A1590 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A1590 PE=4 SV=2

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 98/197 (49%), Gaps = 28/197 (14%)

Query: 65  IATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFL-TV 123
           +A  +P  E+P  +  +YL+D   +  A+   + +R++++  D+++++M PI F+ L   
Sbjct: 11  VALSVP--EAPRPI-QEYLQDIDCLVGAI--ADPERTEKIAPDQYQLKMRPIGFLDLYKF 65

Query: 124 KPVIDMRLRCKTGGKDYPPEVPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGAL-- 181
           +P++ +++ C    +            +  LD   ++LR LE  +K   F L V G L  
Sbjct: 66  QPIVTLKIWCDRHYQ----------VHIKSLD---YQLRGLEPFMK--GFKLDVTGRLQP 110

Query: 182 YSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMKQKVNGSLLQ 241
            +D +  +  L+G+ ++ +   LPP L   P  + +   + +L  +++ +K ++   L++
Sbjct: 111 IADEQ-EQWLLEGEADLQVKLELPPPLWFTPKALVKKTGDRLLREILQRIKGQLLDQLVR 169

Query: 242 DYSKFKRESLNGVRHQT 258
           DY  +     NG R  +
Sbjct: 170 DYQVWA----NGTRENS 182

Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
359489009	251	PREDICTED: uncharacterized protein LOC10	0.938	0.968	0.624	2e-84
224141029	201	predicted protein [Populus trichocarpa]	0.756	0.975	0.736	9e-82
255578284	237	conserved hypothetical protein [Ricinus	0.833	0.911	0.643	3e-81
15241786	239	uncharacterized protein [Arabidopsis tha	0.830	0.899	0.680	5e-80
297801656	242	hypothetical protein ARALYDRAFT_916349 [	0.768	0.822	0.721	7e-80
297801658	231	hypothetical protein ARALYDRAFT_916350 [	0.745	0.835	0.654	2e-69
21593867	230	unknown [Arabidopsis thaliana]	0.841	0.947	0.595	1e-68
15241783	230	uncharacterized protein [Arabidopsis tha	0.841	0.947	0.590	2e-68
10177702	161	unnamed protein product [Arabidopsis tha	0.602	0.968	0.719	1e-60
10177701	331	unnamed protein product [Arabidopsis tha	0.783	0.613	0.535	2e-58

>gi|359489009|ref|XP_002278703.2| PREDICTED: uncharacterized protein LOC100249192 [Vitis vinifera] gi|296082953|emb|CBI22254.3| unnamed protein product [Vitis vinifera]

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 163/261 (62%), Positives = 210/261 (80%), Gaps = 18/261 (6%)

Query: 1   MSKIASTS-LAPCHHG------DRWRVKLMQHHQQPQWQCHATTKSEKRSSSQPLMVKNQ 53
           MS++A+ S   P HH        +W+ +L++    P  Q H  T+ +     QP+ +KNQ
Sbjct: 1   MSEVAAGSAFIPRHHHHFPLGIGKWKDQLVK----PNRQWHVVTQPK----WQPV-IKNQ 51

Query: 54  MAVKPATYSSRIATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQM 113
           M VKP+TY+SRI+TD+PLYESPGALFD+YLED+PRVF A+FPD K+RSQR+NE+EWRIQM
Sbjct: 52  M-VKPSTYTSRISTDLPLYESPGALFDEYLEDQPRVFKAIFPD-KRRSQRINEEEWRIQM 109

Query: 114 LPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLELDITRWELRDLENVIKPSQF 173
           LPIQF+FLTV PVIDMRLRCK+ GKDYPP+VP +ITKVLEL+I RWEL+ L++++KPS F
Sbjct: 110 LPIQFLFLTVWPVIDMRLRCKSRGKDYPPDVPHNITKVLELNIIRWELQGLDDLLKPSHF 169

Query: 174 SLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMKQ 233
           SL VKGALY +R+  +SRLKGQLEM+ISFVLPPVLAL+P+D  R+VAESVL RL+E+MK 
Sbjct: 170 SLGVKGALYPERQAMQSRLKGQLEMSISFVLPPVLALVPEDGLRSVAESVLKRLLENMKH 229

Query: 234 KVNGSLLQDYSKFKRESLNGV 254
           KVNGSLL DY++F+++ L  +
Sbjct: 230 KVNGSLLADYNEFRKQKLKNL 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141029|ref|XP_002323877.1| predicted protein [Populus trichocarpa] gi|222866879|gb|EEF04010.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (791), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 145/197 (73%), Positives = 176/197 (89%), Gaps = 1/197 (0%)

Query: 54  MAVKPATYSSRIATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQM 113
           MA+  ATYSSR+ TDIPLYESPGA FD YLEDKPRVFNA+FPD K+RSQ+LNE+EWRIQM
Sbjct: 1   MAMNSATYSSRMTTDIPLYESPGASFDGYLEDKPRVFNAIFPD-KRRSQQLNEEEWRIQM 59

Query: 114 LPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLELDITRWELRDLENVIKPSQF 173
           LPI F+FLTV PV++MRLRCK+GG+DYPP VP++ITKVLELD+ RW+L+ L+N+ +PSQF
Sbjct: 60  LPINFLFLTVWPVVEMRLRCKSGGRDYPPGVPEEITKVLELDVIRWKLQGLDNIFQPSQF 119

Query: 174 SLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMKQ 233
           SL VKGALY DR+G R+RLKGQLEMNISFVLPPVLA++P++VR+ VAESVL  L+E+MK 
Sbjct: 120 SLGVKGALYPDRQGVRTRLKGQLEMNISFVLPPVLAMVPENVRQPVAESVLRGLVENMKL 179

Query: 234 KVNGSLLQDYSKFKRES 250
           +VN SLL DYSKFK+E+
Sbjct: 180 RVNSSLLADYSKFKQET 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578284|ref|XP_002530009.1| conserved hypothetical protein [Ricinus communis] gi|223530488|gb|EEF32371.1| conserved hypothetical protein [Ricinus communis]

 Score =  307 bits (787), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 150/233 (64%), Positives = 185/233 (79%), Gaps = 17/233 (7%)

Query: 1   MSKIASTSLAPC--------HHGDRWRVKLMQHHQQPQWQCHATTKSEKRSSSQPLM--V 50
           M + A++S A C        +   +W+ KL        WQCH      K  S +PL+  +
Sbjct: 1   MGETAASSFASCQQHLLAGQYSSGKWKAKLKIQ----DWQCHFLAAEPK--SKKPLLFKI 54

Query: 51  KNQMAVKPATYSSRIATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWR 110
           KNQMA  PATYSSRI+TDIP+YESPGA FD+YLEDKPRVF AMFPD K+RS++LN++EWR
Sbjct: 55  KNQMATNPATYSSRISTDIPIYESPGASFDRYLEDKPRVFKAMFPD-KRRSEQLNKEEWR 113

Query: 111 IQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLELDITRWELRDLENVIKP 170
           IQMLPI F+FLTV PV+DMRL+CK+GGKDYPPEVP++ITKVLEL+ITRW+L+ L+NV++P
Sbjct: 114 IQMLPINFLFLTVWPVVDMRLKCKSGGKDYPPEVPRNITKVLELEITRWQLQGLDNVLEP 173

Query: 171 SQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESV 223
           S FSL V+G LY+DR G R+RLKGQLEMNISFVLPPVLAL+P+DVR+NVAESV
Sbjct: 174 SHFSLGVEGLLYADRLGARTRLKGQLEMNISFVLPPVLALVPEDVRKNVAESV 226

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241786|ref|NP_198769.1| uncharacterized protein [Arabidopsis thaliana] gi|26452529|dbj|BAC43349.1| unknown protein [Arabidopsis thaliana] gi|28973021|gb|AAO63835.1| unknown protein [Arabidopsis thaliana] gi|332007061|gb|AED94444.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  303 bits (776), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 147/216 (68%), Positives = 178/216 (82%), Gaps = 1/216 (0%)

Query: 34  HATTKSEKRSSSQPLMVKNQMAVKPATYSSRIATDIPLYESPGALFDQYLEDKPRVFNAM 93
           H    +E RS  +  ++    +VKPATYSSR++TDIPL ESP ALFD+YLEDK RVF AM
Sbjct: 20  HRPVTTEVRSLLRSRVMCQVSSVKPATYSSRLSTDIPLNESPQALFDEYLEDKSRVFEAM 79

Query: 94  FPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLE 153
           FPD K RS RLNE+EWRIQMLPI F+FLTV PV+DMRLRCK+ G+DYPP+VP DITKVLE
Sbjct: 80  FPD-KPRSHRLNEEEWRIQMLPINFLFLTVWPVVDMRLRCKSNGQDYPPDVPLDITKVLE 138

Query: 154 LDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPD 213
           L++ RW+L+ L+ V++P+ FSL VKGALY DRRG  +RL+GQLEMNISFVLPPVL L+P+
Sbjct: 139 LNMMRWKLQGLDRVMEPADFSLEVKGALYPDRRGKHTRLRGQLEMNISFVLPPVLELVPE 198

Query: 214 DVRRNVAESVLTRLIEDMKQKVNGSLLQDYSKFKRE 249
           DVRRN+A +VLT L+E+MK KVNGSLL DYS+FK E
Sbjct: 199 DVRRNLANAVLTGLVENMKHKVNGSLLSDYSRFKNE 234

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297801656|ref|XP_002868712.1| hypothetical protein ARALYDRAFT_916349 [Arabidopsis lyrata subsp. lyrata] gi|297314548|gb|EFH44971.1| hypothetical protein ARALYDRAFT_916349 [Arabidopsis lyrata subsp. lyrata]

 Score =  302 bits (774), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 145/201 (72%), Positives = 176/201 (87%), Gaps = 2/201 (0%)

Query: 50  VKNQMA-VKPATYSSRIATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDE 108
           VK Q++ VKPATYSS+++TDIPL+ESP ALFD+YLEDK R+F AMFPD K RS RLNE+E
Sbjct: 35  VKCQVSSVKPATYSSKLSTDIPLHESPQALFDEYLEDKSRLFEAMFPD-KPRSYRLNEEE 93

Query: 109 WRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLELDITRWELRDLENVI 168
           WRIQMLPI F+FLTV PV+DMRLRCK+ G+DYPP+VP DITKVLEL++ RW+L+ L+ V+
Sbjct: 94  WRIQMLPINFLFLTVCPVVDMRLRCKSNGQDYPPDVPLDITKVLELNMMRWKLKGLDRVM 153

Query: 169 KPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLI 228
           +PS FSL VKGALY DRRG ++RL+GQLEMNISFVLPPVL L+P+DVRRN+A +VLT L+
Sbjct: 154 EPSDFSLEVKGALYPDRRGKQTRLRGQLEMNISFVLPPVLELVPEDVRRNLANAVLTGLV 213

Query: 229 EDMKQKVNGSLLQDYSKFKRE 249
           E+MK KVNGSLL DYS+FK E
Sbjct: 214 ENMKHKVNGSLLADYSRFKNE 234

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297801658|ref|XP_002868713.1| hypothetical protein ARALYDRAFT_916350 [Arabidopsis lyrata subsp. lyrata] gi|297314549|gb|EFH44972.1| hypothetical protein ARALYDRAFT_916350 [Arabidopsis lyrata subsp. lyrata]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/194 (65%), Positives = 161/194 (82%), Gaps = 1/194 (0%)

Query: 56  VKPATYSSRIATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLP 115
           VKPA YSS+I+TDI L+ESP ALFD+YLEDK RVF AMFPD K ++ RLNE+EWRIQMLP
Sbjct: 34  VKPAKYSSKISTDIALHESPQALFDEYLEDKSRVFEAMFPD-KPKNHRLNEEEWRIQMLP 92

Query: 116 IQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLELDITRWELRDLENVIKPSQFSL 175
           I+F F+T  PV+ MR+RCK+ G+DYP +VP   TKVLEL++T+WEL+ L+ V++PS F+L
Sbjct: 93  IKFFFITAWPVVVMRIRCKSNGQDYPSDVPLHTTKVLELNMTKWELQGLDRVMEPSDFTL 152

Query: 176 SVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMKQKV 235
            VKGALY DRRG ++RLKG+LE +ISFVLP VLAL+P+DVRRN+A ++L  L+E+MK KV
Sbjct: 153 GVKGALYPDRRGRQTRLKGRLETSISFVLPSVLALVPEDVRRNMANAILASLVENMKHKV 212

Query: 236 NGSLLQDYSKFKRE 249
             SL+ DYSKFK E
Sbjct: 213 IESLVADYSKFKYE 226

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593867|gb|AAM65834.1| unknown [Arabidopsis thaliana]

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 131/220 (59%), Positives = 169/220 (76%), Gaps = 2/220 (0%)

Query: 31  WQCHATTKSEKRSSSQPLMVKNQMA-VKPATYSSRIATDIPLYESPGALFDQYLEDKPRV 89
           + C     S  +  S+   VK  ++ VK A YSS+I+TDI L+ESP ALFD+YLEDK RV
Sbjct: 8   YSCPGMIGSCGQVRSKRWRVKCHLSPVKSAKYSSKISTDIALHESPQALFDEYLEDKSRV 67

Query: 90  FNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDIT 149
           F AMFPD K ++ RLNE+EWRIQMLPI+F FLT  PV+ MR+RCK+ G+DYP +VP  IT
Sbjct: 68  FEAMFPD-KPKNYRLNEEEWRIQMLPIKFFFLTACPVVVMRIRCKSNGQDYPSDVPLHIT 126

Query: 150 KVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLA 209
           KVLEL++T+WEL+ L+ V++PS F+L VKGALY DRRG  +RLKG+LE  ISFVLP VLA
Sbjct: 127 KVLELNMTKWELQGLDRVMEPSDFTLGVKGALYPDRRGRHTRLKGRLETTISFVLPSVLA 186

Query: 210 LIPDDVRRNVAESVLTRLIEDMKQKVNGSLLQDYSKFKRE 249
           L+P+DVRRN+A ++L  L+++MK +V  SL+ DYSKFK E
Sbjct: 187 LVPEDVRRNMANAILAGLVDNMKHRVIESLVADYSKFKYE 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241783|ref|NP_198768.1| uncharacterized protein [Arabidopsis thaliana] gi|110741124|dbj|BAE98655.1| hypothetical protein [Arabidopsis thaliana] gi|332007060|gb|AED94443.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 130/220 (59%), Positives = 169/220 (76%), Gaps = 2/220 (0%)

Query: 31  WQCHATTKSEKRSSSQPLMVKNQMA-VKPATYSSRIATDIPLYESPGALFDQYLEDKPRV 89
           + C     S  +  S+   VK  ++ VK A YSS+I+TDI L+ESP ALFD+YLEDK RV
Sbjct: 8   YSCPGMIGSCGQVRSKRWRVKCHLSPVKSAKYSSKISTDIALHESPQALFDEYLEDKSRV 67

Query: 90  FNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDIT 149
           F AMFPD K ++ RLNE+EWRIQMLPI+F FLT  PV+ MR+RCK+ G+DYP +VP  IT
Sbjct: 68  FEAMFPD-KPKNYRLNEEEWRIQMLPIKFFFLTACPVVVMRIRCKSNGQDYPSDVPLHIT 126

Query: 150 KVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLA 209
           KVLEL++T+WEL+ L+ V++P+ F+L VKGALY DRRG  +RLKG+LE  ISFVLP VLA
Sbjct: 127 KVLELNMTKWELQGLDRVMEPTDFTLGVKGALYPDRRGRHTRLKGRLETTISFVLPSVLA 186

Query: 210 LIPDDVRRNVAESVLTRLIEDMKQKVNGSLLQDYSKFKRE 249
           L+P+DVRRN+A ++L  L+++MK +V  SL+ DYSKFK E
Sbjct: 187 LVPEDVRRNMANAILAGLVDNMKHRVIESLVADYSKFKYE 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177702|dbj|BAB11028.1| unnamed protein product [Arabidopsis thaliana]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/157 (71%), Positives = 136/157 (86%), Gaps = 1/157 (0%)

Query: 93  MFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDITKVL 152
           MFPD K RS RLNE+EWRIQMLPI F+FLTV PV+DMRLRCK+ G+DYPP+VP DITKVL
Sbjct: 1   MFPD-KPRSHRLNEEEWRIQMLPINFLFLTVWPVVDMRLRCKSNGQDYPPDVPLDITKVL 59

Query: 153 ELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIP 212
           EL++ RW+L+ L+ V++P+ FSL VKGALY DRRG  +RL+GQLEMNISFVLPPVL L+P
Sbjct: 60  ELNMMRWKLQGLDRVMEPADFSLEVKGALYPDRRGKHTRLRGQLEMNISFVLPPVLELVP 119

Query: 213 DDVRRNVAESVLTRLIEDMKQKVNGSLLQDYSKFKRE 249
           +DVRRN+A +VLT L+E+MK KVNGSLL DYS+FK E
Sbjct: 120 EDVRRNLANAVLTGLVENMKHKVNGSLLSDYSRFKNE 156

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177701|dbj|BAB11027.1| unnamed protein product [Arabidopsis thaliana]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 158/224 (70%), Gaps = 21/224 (9%)

Query: 31  WQCHATTKSEKRSSSQPLMVKNQMA-VKPATYSSRIATDIPLYESPG--------ALFDQ 81
           + C     S  +  S+   VK  ++ VK A YSS+I+TDI L+ESP         ALFD+
Sbjct: 8   YSCPGMIGSCGQVRSKRWRVKCHLSPVKSAKYSSKISTDIALHESPQVSFSFYNRALFDE 67

Query: 82  YLEDKPRVFNAMFPDNKQRSQRLNE-----------DEWRIQMLPIQFIFLTVKPVIDMR 130
           YLEDK RVF AMFPD K ++ RLNE           +EWRIQMLPI+F FLT  PV+ MR
Sbjct: 68  YLEDKSRVFEAMFPD-KPKNYRLNEALLLTDEIIVQEEWRIQMLPIKFFFLTACPVVVMR 126

Query: 131 LRCKTGGKDYPPEVPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRS 190
           +RCK+ G+DYP +VP  ITKVLEL++T+WEL+ L+ V++P+ F+L VKGALY DRRG  +
Sbjct: 127 IRCKSNGQDYPSDVPLHITKVLELNMTKWELQGLDRVMEPTDFTLGVKGALYPDRRGRHT 186

Query: 191 RLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMKQK 234
           RLKG+LE  ISFVLP VLAL+P+DVRRN+A ++L  L+++MK +
Sbjct: 187 RLKGRLETTISFVLPSVLALVPEDVRRNMANAILAGLVDNMKHR 230

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
TAIR|locus:2175673	239	AT5G39530 "AT5G39530" [Arabido	0.830	0.899	0.680	8.1e-76
TAIR|locus:2175658	230	AT5G39520 "AT5G39520" [Arabido	0.841	0.947	0.590	2.9e-64

TAIR|locus:2175673 AT5G39530 "AT5G39530" [Arabidopsis thaliana (taxid:3702)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 147/216 (68%), Positives = 178/216 (82%)

Query:    34 HATTKSEKRSSSQPLMVKNQMAVKPATYSSRIATDIPLYESPGALFDQYLEDKPRVFNAM 93
             H    +E RS  +  ++    +VKPATYSSR++TDIPL ESP ALFD+YLEDK RVF AM
Sbjct:    20 HRPVTTEVRSLLRSRVMCQVSSVKPATYSSRLSTDIPLNESPQALFDEYLEDKSRVFEAM 79

Query:    94 FPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLE 153
             FPD K RS RLNE+EWRIQMLPI F+FLTV PV+DMRLRCK+ G+DYPP+VP DITKVLE
Sbjct:    80 FPD-KPRSHRLNEEEWRIQMLPINFLFLTVWPVVDMRLRCKSNGQDYPPDVPLDITKVLE 138

Query:   154 LDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPD 213
             L++ RW+L+ L+ V++P+ FSL VKGALY DRRG  +RL+GQLEMNISFVLPPVL L+P+
Sbjct:   139 LNMMRWKLQGLDRVMEPADFSLEVKGALYPDRRGKHTRLRGQLEMNISFVLPPVLELVPE 198

Query:   214 DVRRNVAESVLTRLIEDMKQKVNGSLLQDYSKFKRE 249
             DVRRN+A +VLT L+E+MK KVNGSLL DYS+FK E
Sbjct:   199 DVRRNLANAVLTGLVENMKHKVNGSLLSDYSRFKNE 234

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175658 AT5G39520 "AT5G39520" [Arabidopsis thaliana (taxid:3702)]

 Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
 Identities = 130/220 (59%), Positives = 169/220 (76%)

Query:    31 WQCHATTKSEKRSSSQPLMVKNQMA-VKPATYSSRIATDIPLYESPGALFDQYLEDKPRV 89
             + C     S  +  S+   VK  ++ VK A YSS+I+TDI L+ESP ALFD+YLEDK RV
Sbjct:     8 YSCPGMIGSCGQVRSKRWRVKCHLSPVKSAKYSSKISTDIALHESPQALFDEYLEDKSRV 67

Query:    90 FNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDIT 149
             F AMFPD K ++ RLNE+EWRIQMLPI+F FLT  PV+ MR+RCK+ G+DYP +VP  IT
Sbjct:    68 FEAMFPD-KPKNYRLNEEEWRIQMLPIKFFFLTACPVVVMRIRCKSNGQDYPSDVPLHIT 126

Query:   150 KVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLA 209
             KVLEL++T+WEL+ L+ V++P+ F+L VKGALY DRRG  +RLKG+LE  ISFVLP VLA
Sbjct:   127 KVLELNMTKWELQGLDRVMEPTDFTLGVKGALYPDRRGRHTRLKGRLETTISFVLPSVLA 186

Query:   210 LIPDDVRRNVAESVLTRLIEDMKQKVNGSLLQDYSKFKRE 249
             L+P+DVRRN+A ++L  L+++MK +V  SL+ DYSKFK E
Sbjct:   187 LVPEDVRRNMANAILAGLVDNMKHRVIESLVADYSKFKYE 226


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      259       259   0.00088  114 3  11 22  0.45    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  192 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.03u 0.09s 24.12t   Elapsed:  00:00:01
  Total cpu time:  24.03u 0.09s 24.12t   Elapsed:  00:00:01
  Start:  Sat May 11 10:02:04 2013   End:  Sat May 11 10:02:05 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
pfam09366	170	pfam09366, DUF1997, Protein of unknown function (D	2e-45

>gnl|CDD|117908 pfam09366, DUF1997, Protein of unknown function (DUF1997)

 Score =  150 bits (380), Expect = 2e-45
 Identities = 49/189 (25%), Positives = 93/189 (49%), Gaps = 19/189 (10%)

Query: 61  YSSRIATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIF 120
           +S+  + D+PL   P     +YL    RVF+A+   +  + +RL +  +R+ + P  F  
Sbjct: 1   FSASQSLDLPLPA-PAEPLAEYLRQPQRVFSALL--DPMKVERLGDGRYRLTVRPFGFFG 57

Query: 121 LTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGA 180
             V+PV+ +R+  +  G                 ++   EL  L  V     F L ++ +
Sbjct: 58  FEVEPVVVLRVEPEDDGLTI--------------ELLDCELEGLPLV--NDDFDLDLRAS 101

Query: 181 LYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMKQKVNGSLL 240
           LY DR  T + L+G  +++++  LPP L L+P+ V  +  ES+L  ++  +K+++   LL
Sbjct: 102 LYPDREATETGLEGDADLSVTVSLPPPLRLLPEPVLESTGESLLQGILRQIKRRLTRQLL 161

Query: 241 QDYSKFKRE 249
           +D+  +  E
Sbjct: 162 EDFHAWIAE 170

This family of proteins are functionally uncharacterized. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
PF09366	158	DUF1997: Protein of unknown function (DUF1997); In	100.0
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	98.55
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	98.01
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	97.47
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	96.6
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	95.03
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	92.16
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	91.61
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	90.95
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	87.66
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	86.29
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	85.13
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	82.09

>PF09366 DUF1997: Protein of unknown function (DUF1997); InterPro: IPR018971 This family of proteins are functionally uncharacterised

Probab=100.00  E-value=1.7e-46  Score=317.83  Aligned_cols=157  Identities=32%  Similarity=0.608  Sum_probs=151.9

Q ss_pred             CcHHHHhccCCceeeeccCCCccceeecCCCcEEEEeecceeEeEEEeEEEEEEEEEcCCCccCCCCCCcCcceeEEEEE
Q 024974           77 ALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLELDI  156 (259)
Q Consensus        77 ~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~~l~ff~~eV~PvV~lrV~~~~~G~~yp~~~~~~~~~~l~i~s  156 (259)
                      ++|++||++|+||+++|| | ++++|+||||+|||+|+||+||+|+|+|+|+|+|+++++|              |.|++
T Consensus         2 ~~l~~YL~~~~r~~~~~~-d-~~~ie~l~~~~yr~~~~~~~~~~~~v~P~v~l~v~~~~~~--------------~~i~~   65 (158)
T PF09366_consen    2 APLAEYLSDPQRWFSALF-D-PMRIEPLGDNTYRLKMRPFQFFGFEVEPVVDLRVWPQDDG--------------LTIRS   65 (158)
T ss_pred             CchHHHHhCchhHHHHhc-C-HHHcEEcCCCeEEEEEcCccEEEEEEEEEEEEEEEEcCCC--------------eEEEE
Confidence            479999999999999999 5 9999999999999999999999999999999999999997              47999


Q ss_pred             eeeeecCcccccCCCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHHHHHHHHHHHHHHHH
Q 024974          157 TRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMKQKVN  236 (259)
Q Consensus       157 ~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~vL~~Il~~i~~rl~  236 (259)
                      .+|+|+|++++++|++|+++++|.|+|.+.++.|.|+|+++|+|++++|++|+++|++++|+|||+||++|+++|++||+
T Consensus        66 ~~~~l~G~~~~~~~~~f~l~~~~~l~~~~~~~~t~l~~~~~l~V~v~~P~~~~~~P~~~l~~~G~~vl~~il~~i~~r~~  145 (158)
T PF09366_consen   66 LDCELRGSPLVEQNDGFSLDLQASLYPEEPPGRTRLEGDADLSVSVELPPPFRLLPESLLESTGNAVLQQILRQIKPRFL  145 (158)
T ss_pred             EEEEEeCCCccccCCcEEEEEEEEEEEecCCCceEEEEEEEEEEEEEcChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999667999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 024974          237 GSLLQDYSKFKRE  249 (259)
Q Consensus       237 ~qL~~DY~~W~~~  249 (259)
                      ++|++||++|+++
T Consensus       146 ~~l~~Dy~~w~~~  158 (158)
T PF09366_consen  146 QQLQADYHRWARE  158 (158)
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999999985

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=98.55  E-value=1.5e-06  Score=71.59  Aligned_cols=136  Identities=15%  Similarity=0.209  Sum_probs=96.8

Q ss_pred             eeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEee-cceeEeEEEeEEEEEEEEEcCCCccCCCCCCcC
Q 024974           69 IPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQML-PIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQD  147 (259)
Q Consensus        69 ~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~-~l~ff~~eV~PvV~lrV~~~~~G~~yp~~~~~~  147 (259)
                      ..++.+++ .+-++|.||+.+ .+|+|. -+.+|.++ ++|+.++. +++++..++.=.+.+.=...++.  |       
T Consensus         3 ~~v~a~~~-~vw~~l~D~~~l-~~ciPG-~~~~e~~~-~~~~~~~~v~vG~i~~~~~g~~~~~~~~~~~~--~-------   69 (140)
T PF06240_consen    3 FEVPAPPE-KVWAFLSDPENL-ARCIPG-VESIEKVG-DEYKGKVKVKVGPIKGTFDGEVRITEIDPPES--Y-------   69 (140)
T ss_dssp             EEECS-HH-HHHHHHT-HHHH-HHHSTT-EEEEEEEC-TEEEEEEEEESCCCEEEEEEEEEEEEEETTTE--E-------
T ss_pred             EEecCCHH-HHHHHhcCHHHH-HhhCCC-cEEeeecC-cEEEEEEEEEeccEEEEEEEEEEEEEcCCCcc--e-------
Confidence            45666666 789999999995 679996 99999999 99999988 78888777755554443333331  1       


Q ss_pred             cceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHHHHHHH
Q 024974          148 ITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRL  227 (259)
Q Consensus       148 ~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~vL~~I  227 (259)
                           +     +++.|.+..   ..+++...-.+...++++ |.|.|+++++++    .+++.+.+.+++++.+.+++++
T Consensus        70 -----~-----~~~~g~g~~---~~~~~~~~~~~~~~~~~~-T~v~~~~~~~~~----G~la~~g~~~i~~~~~~l~~~f  131 (140)
T PF06240_consen   70 -----T-----LEFEGRGRG---GGSSASANITLSLEDDGG-TRVTWSADVEVG----GPLASLGQRLIESVARRLIEQF  131 (140)
T ss_dssp             -----E-----EEEEEEECT---CCEEEEEEEEEEECCCTC-EEEEEEEEEEEE----CHHHHC-HHHHHHHHHHHHHHH
T ss_pred             -----E-----eeeeccCCc---cceEEEEEEEEEcCCCCC-cEEEEEEEEEEc----cCHHHhhHHHHHHHHHHHHHHH
Confidence                 1     344455554   355555555566656666 889999988765    6778888889999999999988


Q ss_pred             HHHHHHHH
Q 024974          228 IEDMKQKV  235 (259)
Q Consensus       228 l~~i~~rl  235 (259)
                      ...+..++
T Consensus       132 ~~~l~~~l  139 (140)
T PF06240_consen  132 FENLERKL  139 (140)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            88888765

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.01  E-value=0.00022  Score=58.33  Aligned_cols=141  Identities=14%  Similarity=0.149  Sum_probs=88.5

Q ss_pred             eeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEeecceeEeEEEeEEEEEEEEEcC-CCccCCCCCC
Q 024974           67 TDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKT-GGKDYPPEVP  145 (259)
Q Consensus        67 ~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~~l~ff~~eV~PvV~lrV~~~~-~G~~yp~~~~  145 (259)
                      .++.+..+++ .+=++|.|+++|. +|.|. -+.++.+++++|+.++ +++..++...=...+++...+ .+.       
T Consensus         3 ~~~~v~a~pe-~vw~~l~D~~~~~-~~~pg-~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~-------   71 (146)
T cd07823           3 NEFTVPAPPD-RVWALLLDIERVA-PCLPG-ASLTEVEGDDEYKGTV-KVKLGPISASFKGTARLLEDDEAAR-------   71 (146)
T ss_pred             ceEEecCCHH-HHHHHhcCHHHHH-hcCCC-ceeccccCCCeEEEEE-EEEEccEEEEEEEEEEEEeccCCCc-------
Confidence            3566777777 7899999999965 79985 7888889999998776 344443333223334554433 221       


Q ss_pred             cCcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHHHHH
Q 024974          146 QDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLT  225 (259)
Q Consensus       146 ~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~vL~  225 (259)
                           .+++.     ..|.+.-.. ......+.-.|.+  .++.|.|.++++++++.-+    ..+...++++..+.+++
T Consensus        72 -----~~~~~-----~~g~~~~~~-g~~~~~~~~~l~~--~~~gT~v~~~~~~~~~g~l----~~l~~~~v~~~~~~~~~  134 (146)
T cd07823          72 -----RAVLE-----ATGKDARGQ-GTAEATVTLRLSP--AGGGTRVTVDTDLALTGKL----AQFGRGGIGDVAGRLLA  134 (146)
T ss_pred             -----EEEEE-----EEEecCCCc-ceEEEEEEEEEEe--cCCcEEEEEEEEEEEeeEh----HHhChhHHHHHHHHHHH
Confidence                 11222     223211110 1212233334444  4456889999988766555    44558889999999999


Q ss_pred             HHHHHHHHHH
Q 024974          226 RLIEDMKQKV  235 (259)
Q Consensus       226 ~Il~~i~~rl  235 (259)
                      ++++.++.|+
T Consensus       135 ~~~~~l~~~~  144 (146)
T cd07823         135 QFAANLEARL  144 (146)
T ss_pred             HHHHHHHHHh
Confidence            9999988875

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=97.47  E-value=0.0038  Score=49.46  Aligned_cols=140  Identities=11%  Similarity=0.127  Sum_probs=84.6

Q ss_pred             eeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEeecceeEeEEEeEEEEEEEEEcCCCccCCCCCC
Q 024974           66 ATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVP  145 (259)
Q Consensus        66 s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~~l~ff~~eV~PvV~lrV~~~~~G~~yp~~~~  145 (259)
                      +.+..+..+++ .+-++|.|++++ ..++|. ...++.++++.|.+.+. +++..+...=....++...+.+.       
T Consensus         4 ~~~~~i~a~~e-~v~~~l~D~~~~-~~w~p~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------   72 (144)
T cd05018           4 SGEFRIPAPPE-EVWAALNDPEVL-ARCIPG-CESLEKIGPNEYEATVK-LKVGPVKGTFKGKVELSDLDPPE-------   72 (144)
T ss_pred             eeEEEecCCHH-HHHHHhcCHHHH-Hhhccc-hhhccccCCCeEEEEEE-EEEccEEEEEEEEEEEEecCCCc-------
Confidence            45566777776 789999999995 568875 88899999998887653 23221111111223333222211       


Q ss_pred             cCcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHHHHH
Q 024974          146 QDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLT  225 (259)
Q Consensus       146 ~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~vL~  225 (259)
                           .+.+.     ..|.+..    .+ ..+.+.....+.++.|.|.+.++++    ++.++..+|..++......+++
T Consensus        73 -----~~~~~-----~~~~~~~----~~-~~~~~~~~l~~~~~gT~v~~~~~~~----~~g~l~~l~~~~~~~~~~~~~~  133 (144)
T cd05018          73 -----SYTIT-----GEGKGGA----GF-VKGTARVTLEPDGGGTRLTYTADAQ----VGGKLAQLGSRLIDGAARKLIN  133 (144)
T ss_pred             -----EEEEE-----EEEcCCC----ce-EEEEEEEEEEecCCcEEEEEEEEEE----EccChhhhCHHHHHHHHHHHHH
Confidence                 11222     1221111    11 1233433333334457777777666    4467888899999999999999


Q ss_pred             HHHHHHHHHH
Q 024974          226 RLIEDMKQKV  235 (259)
Q Consensus       226 ~Il~~i~~rl  235 (259)
                      +.++.|+.++
T Consensus       134 ~~~~~l~~~~  143 (144)
T cd05018         134 QFFENLASKI  143 (144)
T ss_pred             HHHHHHHHhh
Confidence            9999998875

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=96.60  E-value=0.033  Score=47.45  Aligned_cols=132  Identities=15%  Similarity=0.163  Sum_probs=72.6

Q ss_pred             eecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEee-cceeEeEEEeEEEEEEEEEcC--CCccCCCCCCc
Q 024974           70 PLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQML-PIQFIFLTVKPVIDMRLRCKT--GGKDYPPEVPQ  146 (259)
Q Consensus        70 ~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~-~l~ff~~eV~PvV~lrV~~~~--~G~~yp~~~~~  146 (259)
                      .+..+++ .+=++|.||+. +.+|+|- =+.+|.-|| +|.+++. +++.+.    =.+.-++.-.+  +-.        
T Consensus         8 ~V~~p~e-~Vw~~L~dpe~-~a~ciPG-~qs~e~~g~-e~~~~v~l~ig~l~----~~~~g~~~~~~v~~~~--------   71 (146)
T COG3427           8 RVAAPPE-AVWEFLNDPEQ-VAACIPG-VQSVETNGD-EYTAKVKLKIGPLK----GTFSGRVRFVNVDEPP--------   71 (146)
T ss_pred             EecCCHH-HHHHHhcCHHH-HHhhcCC-cceeeecCC-eEEEEEEEeeccee----EEEEEEEEEccccCCC--------
Confidence            3445555 68899999999 6789984 888999998 9988764 333333    22222222222  100        


Q ss_pred             CcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHHHHHH
Q 024974          147 DITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTR  226 (259)
Q Consensus       147 ~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~vL~~  226 (259)
                                ..++++|.+--.. .-+..+..-.+.++  +..|+|.|.++.++..    .++.+=..+++++.+.+.++
T Consensus        72 ----------~~~~i~g~G~~~~-g~~~~~~~v~l~~~--g~gt~v~w~~~~~~gg----~laqlGsr~i~~~~~kli~~  134 (146)
T COG3427          72 ----------RSITINGSGGGAA-GFADGTVDVQLEPS--GEGTRVNWFADANVGG----KLAQLGSRLIDSVARKLINR  134 (146)
T ss_pred             ----------cEEEEEeeccccc-ceeeeeeEEEEEEc--CCCcEEEEEEEccccH----HHHHHhHHHHHHHHHHHHHH
Confidence                      1234455541111 22233344445444  4448999999998873    33333344444444444444


Q ss_pred             HHHHHHHH
Q 024974          227 LIEDMKQK  234 (259)
Q Consensus       227 Il~~i~~r  234 (259)
                      +++.|+..
T Consensus       135 ~~~~l~~~  142 (146)
T COG3427         135 FFDCLSSE  142 (146)
T ss_pred             HHHHHHHH
Confidence            44444443

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=95.03  E-value=1.1  Score=34.72  Aligned_cols=132  Identities=11%  Similarity=0.098  Sum_probs=70.8

Q ss_pred             EeeeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecC-CCcEE-EEeecceeEe-EEEeEEEEEEEEEcCC-Ccc
Q 024974           64 RIATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLN-EDEWR-IQMLPIQFIF-LTVKPVIDMRLRCKTG-GKD  139 (259)
Q Consensus        64 ~~s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lg-d~~yR-l~m~~l~ff~-~eV~PvV~lrV~~~~~-G~~  139 (259)
                      +.+.++.+..+++ .+=+||.|+.++- ...|. -..++.++ ++.+. ..+.   +.+ .+    +..++..-+. +..
T Consensus         3 ~~~~~~~v~a~~e-~V~~~l~d~~~~~-~w~~~-~~~~~~~~~~~~~~~~~~~---~~g~~~----~~~~i~~~~~~~~~   72 (139)
T PF10604_consen    3 KVEVSIEVPAPPE-AVWDLLSDPENWP-RWWPG-VKSVELLSGGGPGTERTVR---VAGRGT----VREEITEYDPEPRR   72 (139)
T ss_dssp             EEEEEEEESS-HH-HHHHHHTTTTGGG-GTSTT-EEEEEEEEECSTEEEEEEE---ECSCSE----EEEEEEEEETTTTE
T ss_pred             EEEEEEEECCCHH-HHHHHHhChhhhh-hhhhc-eEEEEEccccccceeEEEE---eccccc----eeEEEEEecCCCcE
Confidence            3455666777777 7899999999964 45553 66777776 66643 2222   222 23    3333322222 322


Q ss_pred             CCCCCCcCcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHH
Q 024974          140 YPPEVPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNV  219 (259)
Q Consensus       140 yp~~~~~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~t  219 (259)
                                  +..++.     +.+.      ..  +.+.....+.+..|.|.+..++..     ++...++..++...
T Consensus        73 ------------~~~~~~-----~~~~------~~--~~~~~~~~~~~~gt~v~~~~~~~~-----~~~~~~~~~~~~~~  122 (139)
T PF10604_consen   73 ------------ITWRFV-----PSGF------TN--GTGRWRFEPVGDGTRVTWTVEFEP-----GLPGWLAGPLLRPA  122 (139)
T ss_dssp             ------------EEEEEE-----SSSS------CE--EEEEEEEEEETTTEEEEEEEEEEE-----SCTTSCHHHHHHHH
T ss_pred             ------------EEEEEE-----ecce------eE--EEEEEEEEEcCCCEEEEEEEEEEE-----eccchhhHHHHHHH
Confidence                        122221     1111      11  233333333344477887777765     44455566667776


Q ss_pred             HHHHHHHHHHHHHHHH
Q 024974          220 AESVLTRLIEDMKQKV  235 (259)
Q Consensus       220 G~~vL~~Il~~i~~rl  235 (259)
                      -...+++.++.|++.+
T Consensus       123 ~~~~~~~~l~~l~~~~  138 (139)
T PF10604_consen  123 VKRIVREALENLKRAA  138 (139)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccc
Confidence            6777777777777654

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=92.16  E-value=2.8  Score=33.15  Aligned_cols=43  Identities=5%  Similarity=-0.021  Sum_probs=29.6

Q ss_pred             CcceEEEEEEEEEEEEcCcceeccchHHHHHHHHHHHHHHHHHHHHHH
Q 024974          188 TRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLTRLIEDMKQKV  235 (259)
Q Consensus       188 ~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~vL~~Il~~i~~rl  235 (259)
                      +.|.|...++....    .++. ++..+++..-+..++..|+.|+.++
T Consensus        98 ~~t~Vt~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~l~~lk~~~  140 (142)
T cd08861          98 GGTRVTLRHDFTLG----IDSP-EAVPWIRRALDRNSRAELAALRAAA  140 (142)
T ss_pred             CcEEEEEEEEEEEC----CCCc-hhHHHHHHHHccccHHHHHHHHHHh
Confidence            34666655555443    2222 7788888888888999999888875

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=91.61  E-value=5.7  Score=31.45  Aligned_cols=135  Identities=13%  Similarity=0.199  Sum_probs=69.0

Q ss_pred             eeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecC--CCcEEEEe-ecceeEeEEEeEEEEEEEEEcCCCccCCCC
Q 024974           67 TDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLN--EDEWRIQM-LPIQFIFLTVKPVIDMRLRCKTGGKDYPPE  143 (259)
Q Consensus        67 ~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lg--d~~yRl~m-~~l~ff~~eV~PvV~lrV~~~~~G~~yp~~  143 (259)
                      ..+.+.++++ .+=++|.|.+++ ....|. =.+++-|+  ++..+++. ....++.+.+.=.|.+++...++..     
T Consensus         3 ~~~~i~a~~~-~Vw~~l~D~~~~-~~w~p~-v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----   74 (144)
T cd08866           3 ARVRVPAPPE-TVWAVLTDYDNL-AEFIPN-LAESRLLERNGNRVVLEQTGKQGILFFKFEARVVLELREREEFP-----   74 (144)
T ss_pred             EEEEECCCHH-HHHHHHhChhhH-HhhCcC-ceEEEEEEcCCCEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCC-----
Confidence            3566777776 788899998884 445543 44444443  23323222 3444544333223444444333200     


Q ss_pred             CCcCcceeEEEEEeeeeecCcccccCCCceeEEeeeeE--eecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHH
Q 024974          144 VPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGAL--YSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAE  221 (259)
Q Consensus       144 ~~~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L--~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~  221 (259)
                            +.+.+...    .| + +   ..    ++|..  .+..+|+.|.++.++++.-..       .+|..++.....
T Consensus        75 ------~~i~~~~~----~g-~-~---~~----~~g~w~~~~~~~~~~t~v~~~~~~~~~~-------~~p~~l~~~~~~  128 (144)
T cd08866          75 ------RELDFEMV----EG-D-F---KR----FEGSWRLEPLADGGGTLLTYEVEVKPDF-------FAPVFLVEFVLR  128 (144)
T ss_pred             ------ceEEEEEc----CC-c-h---hc----eEEEEEEEECCCCCeEEEEEEEEEEeCC-------CCCHHHHHHHHH
Confidence                  11122222    23 1 1   12    33433  333333467777766655332       455667777777


Q ss_pred             HHHHHHHHHHHHHH
Q 024974          222 SVLTRLIEDMKQKV  235 (259)
Q Consensus       222 ~vL~~Il~~i~~rl  235 (259)
                      ..+..+++.|+.++
T Consensus       129 ~~~~~~l~~lr~~a  142 (144)
T cd08866         129 QDLPTNLLAIRAEA  142 (144)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777777765

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=90.95  E-value=2  Score=37.50  Aligned_cols=143  Identities=11%  Similarity=0.082  Sum_probs=80.9

Q ss_pred             eeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEee-cceeEeEEEeEEEEEEEEEc--CCCccCCCC
Q 024974           67 TDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQML-PIQFIFLTVKPVIDMRLRCK--TGGKDYPPE  143 (259)
Q Consensus        67 ~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~-~l~ff~~eV~PvV~lrV~~~--~~G~~yp~~  143 (259)
                      ..+.|.+.++.-++.-++....|...|.  +.+.+++++++++.++.. ...+ .+.-.=.|.++.+-.  ++|.+    
T Consensus        48 ~~~~v~a~~~~v~~~l~d~r~~Wd~~~~--~~~vie~id~~~~i~y~~~~~p~-pv~~RDfV~~r~~~~~~~~g~~----  120 (197)
T cd08869          48 ASTEVEAPPEEVLQRILRERHLWDDDLL--QWKVVETLDEDTEVYQYVTNSMA-PHPTRDYVVLRTWRTDLPKGAC----  120 (197)
T ss_pred             EEEEeCCCHHHHHHHHHHHHhccchhhh--eEEEEEEecCCcEEEEEEeeCCC-CCCCceEEEEEEEEecCCCCcE----
Confidence            3555666665344555666677888888  578899999988755432 1111 223444566766553  34432    


Q ss_pred             CCcCcceeEEEEEeeeeecCc--ccccCCCceeEEeeeeE-eecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHH
Q 024974          144 VPQDITKVLELDITRWELRDL--ENVIKPSQFSLSVKGAL-YSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVA  220 (259)
Q Consensus       144 ~~~~~~~~l~i~s~~~~l~Gl--~~v~~~~~F~l~l~g~L-~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG  220 (259)
                             ++...++..+ ...  +++    +......|.+ .|. ..+.|.|+..+.+.....+|.++       .-.+|
T Consensus       121 -------~i~~~Sv~~~-~~~p~g~V----R~~~~~~g~~i~p~-~~~~t~vty~~~~Dp~G~iP~wl-------~N~~~  180 (197)
T cd08869         121 -------VLVETSVEHT-EPVPLGGV----RAVVLASRYLIEPC-GSGKSRVTHICRVDLRGRSPEWY-------NKVYG  180 (197)
T ss_pred             -------EEEEECCcCC-CCCCCCCE----EEEEEeeeEEEEEC-CCCCeEEEEEEEECCCCCCCcee-------ecchH
Confidence                   3445555321 111  323    1111122222 222 23467888888888887777665       33344


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 024974          221 ESVLTRLIEDMKQKVNG  237 (259)
Q Consensus       221 ~~vL~~Il~~i~~rl~~  237 (259)
                       .+|-.+|+.|+..|..
T Consensus       181 -~~~~~~~~~l~~~~~~  196 (197)
T cd08869         181 -HLCARELLRIRDSFRQ  196 (197)
T ss_pred             -hHHHHHHHHHHhhccC
Confidence             7888888888887753

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=87.66  E-value=11  Score=28.95  Aligned_cols=37  Identities=14%  Similarity=0.135  Sum_probs=25.3

Q ss_pred             eeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCC
Q 024974           68 DIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNED  107 (259)
Q Consensus        68 ~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~  107 (259)
                      .+.+.++++ .+=++|.|++++ ..+.|. -..++.++++
T Consensus         4 ~~~i~ap~~-~Vw~~l~d~~~~-~~w~~~-~~~~~~~~~~   40 (140)
T cd08865           4 SIVIERPVE-EVFAYLADFENA-PEWDPG-VVEVEKITDG   40 (140)
T ss_pred             EEEEcCCHH-HHHHHHHCccch-hhhccC-ceEEEEcCCC
Confidence            345666666 789999999995 556654 5567766544

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=86.29  E-value=7.2  Score=31.55  Aligned_cols=41  Identities=12%  Similarity=0.099  Sum_probs=32.3

Q ss_pred             EEEEEEEEEcCc----ceeccchHHHHHHHHHHHHHHHHHHHHHH
Q 024974          195 QLEMNISFVLPP----VLALIPDDVRRNVAESVLTRLIEDMKQKV  235 (259)
Q Consensus       195 ~~dL~V~v~lP~----~l~llP~~lle~tG~~vL~~Il~~i~~rl  235 (259)
                      .+.+...++.+.    +++.+...++....+.+|+.+++.+++++
T Consensus       102 ~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~~  146 (146)
T cd07824         102 VVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARRL  146 (146)
T ss_pred             EEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhhC
Confidence            345556666665    58888899999999999999999998873

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=85.13  E-value=16  Score=28.35  Aligned_cols=37  Identities=14%  Similarity=0.200  Sum_probs=26.6

Q ss_pred             eeeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeec
Q 024974           65 IATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRL  104 (259)
Q Consensus        65 ~s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~L  104 (259)
                      .+.++.+.++++ .|=++|.|++++ ....|. -..++.+
T Consensus         4 v~~s~~i~ap~e-~V~~~l~D~~~~-~~w~p~-~~~~~~~   40 (140)
T cd07819           4 VSREFEIEAPPA-AVMDVLADVEAY-PEWSPK-VKSVEVL   40 (140)
T ss_pred             EEEEEEEeCCHH-HHHHHHhChhhh-hhhCcc-eEEEEEe
Confidence            455677777777 799999999996 457764 5556553

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=82.09  E-value=21  Score=27.58  Aligned_cols=46  Identities=13%  Similarity=0.091  Sum_probs=32.3

Q ss_pred             eeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCC-----cEEEEee
Q 024974           66 ATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNED-----EWRIQML  114 (259)
Q Consensus        66 s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~-----~yRl~m~  114 (259)
                      +..+.+.++++ .+=+|+.|++.+ ....|. -..++.++++     .|++.+.
T Consensus         4 ~~~~~i~Ap~~-~Vw~~~~d~~~~-~~w~~~-~~~~~~~~~~~~~G~~~~~~~~   54 (138)
T cd08862           4 EATIVIDAPPE-RVWAVLTDVENW-PAWTPS-VETVRLEGPPPAVGSSFKMKPP   54 (138)
T ss_pred             EEEEEEcCCHH-HHHHHHHhhhhc-ccccCc-ceEEEEecCCCCCCcEEEEecC
Confidence            45667777777 789999999996 445543 5677777765     6666554

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 2e-07
 Identities = 33/244 (13%), Positives = 71/244 (29%), Gaps = 65/244 (26%)

Query: 72  YESPGALFDQYLEDKPRVFNAMF---PDNKQR-SQRLNEDEWRIQMLPIQFIF---LTV- 123
             SP  + +  L+      +  +    D+      R++  +  ++ L     +   L V 
Sbjct: 192 CNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 124 -----KPVID-MRLRCKT-------------GGKDYPPEVPQDITKVLELDIT-----RW 159
                    +   L CK                           +  L  D       ++
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 160 ---ELRDL-ENVIKPSQFSLSVKGALYSDRRGT--------RSRLKGQLEMNISFVLPPV 207
                +DL   V+  +   LS+      D   T          +L   +E +++ VL P 
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN-VLEPA 369

Query: 208 --------LALIPDDVRRNVAESVLTRL--------IEDMKQK-VNGSLLQDYSKFKRES 250
                   L++ P     ++   +L+ +        +  +  K    SL++   K    S
Sbjct: 370 EYRKMFDRLSVFPPSA--HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 251 LNGV 254
           +  +
Sbjct: 428 IPSI 431

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 31/189 (16%), Positives = 68/189 (35%), Gaps = 36/189 (19%)

Query: 63  SRIATDIPLYESPGALFDQYLEDKPRVFNA--MF-PDNKQRSQRLNE-DEWRIQMLPIQF 118
           S I T+      P  +   Y+E + R++N   +F   N  R Q   +  +  +++ P + 
Sbjct: 96  SPIKTE---QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 119 IF-----------LTVKPVIDMRLRCKTGGKDYPPEVPQDITKVLELDITRWELRDLENV 167
           +            + +   +  +++CK   K +   +    +    L++    L+ L   
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM----LQKLLYQ 208

Query: 168 IKPSQFSLSVKGALYSDRRG-TRSRLKGQLEMNISFVLPPVLALIPDDVR-RNVAES--- 222
           I P+  S S   +    R    ++ L+  L+          L L+  +V+      +   
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---PYENCL-LVLLNVQNAKAWNAFNL 264

Query: 223 -----VLTR 226
                + TR
Sbjct: 265 SCKILLTTR 273

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
2pcs_A	162	Conserved protein; structural genomics, unknown fu	96.89
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	96.72
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	95.49
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	88.89
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	86.56

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=96.89  E-value=0.024  Score=45.16  Aligned_cols=142  Identities=10%  Similarity=0.076  Sum_probs=81.9

Q ss_pred             eeeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEee-cceeEeEEEeEEEEEEEEEcCCCccCCCC
Q 024974           65 IATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQML-PIQFIFLTVKPVIDMRLRCKTGGKDYPPE  143 (259)
Q Consensus        65 ~s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~-~l~ff~~eV~PvV~lrV~~~~~G~~yp~~  143 (259)
                      .+..+.+.++++ .+=++|.||+++ ..++|. -..++.++++.|+..+. +++.+...+.-.  +++...+.+.     
T Consensus         5 i~~~~~i~ap~e-~Vw~~l~D~e~~-~~w~p~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~-----   74 (162)
T 2pcs_A            5 GNGSIELKGTVE-EVWSKLMDPSIL-SKCIMG-CKSLELIGEDKYKADLQIGIAAVKGKYDAI--IEVTDIKPPY-----   74 (162)
T ss_dssp             EEEEEEEESCHH-HHHHHHTCHHHH-HHHSTT-EEEEEEEETTEEEEEEEECCGGGCEEEEEE--EEEEEEETTT-----
T ss_pred             EeeEEEecCCHH-HHHHHhcCHHHH-HhhCCC-ceEeEEeCCCeEEEEEEEEeeeEEEEEEEE--EEEEecCCCc-----
Confidence            344566777777 789999999985 567765 66788888888987763 222233333322  2222212211     


Q ss_pred             CCcCcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecC-CCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHH
Q 024974          144 VPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDR-RGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAES  222 (259)
Q Consensus       144 ~~~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~-~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~  222 (259)
                             .+.+...     |.+..   ..+.  ..+.....+ .++.|.|...+++.+    ..++..++..++..+.+.
T Consensus        75 -------~~~~~~~-----~~~~~---~~~~--~~~~~~l~~~~~~gT~v~~~~~~~~----~g~l~~~~~~l~~~~~~~  133 (162)
T 2pcs_A           75 -------HYKLLVN-----GEGGP---GFVN--AEGVIDLTPINDECTQLTYTYSAEV----GGKVAAIGQRMLGGVAKL  133 (162)
T ss_dssp             -------EEEEEEE-----EEETT---EEEE--EEEEEEEEESSSSEEEEEEEEEEEE----ESGGGGGCHHHHHHHHHH
T ss_pred             -------EEEEEEE-----ecCCC---ccEE--EEEEEEEEecCCCcEEEEEEEEEEE----CCCHHHhhHHHHHHHHHH
Confidence                   1122221     11100   1122  233333333 344677777766654    455666777888888888


Q ss_pred             HHHHHHHHHHHHHHH
Q 024974          223 VLTRLIEDMKQKVNG  237 (259)
Q Consensus       223 vL~~Il~~i~~rl~~  237 (259)
                      ++++.+++++.++..
T Consensus       134 ~~~~~~~~lk~~~e~  148 (162)
T 2pcs_A          134 LISDFFKKIQKEIAK  148 (162)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc
Confidence            888888888887764

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=96.72  E-value=0.023  Score=44.61  Aligned_cols=140  Identities=15%  Similarity=0.227  Sum_probs=80.4

Q ss_pred             EeeeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEee-cceeEeEEEeEEEEEEEEEcCCCccCCC
Q 024974           64 RIATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQML-PIQFIFLTVKPVIDMRLRCKTGGKDYPP  142 (259)
Q Consensus        64 ~~s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~-~l~ff~~eV~PvV~lrV~~~~~G~~yp~  142 (259)
                      +.+....+.++++ .+=+++.|++++ ..++|. -..++ ++++.|+..+. +++.+.....  ..+++...+.+.    
T Consensus        14 ~i~~~~~i~ap~e-~Vw~~l~D~~~~-~~w~p~-~~~~~-~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~----   83 (157)
T 2ns9_A           14 RYEGSFEVSKTPE-EVFEFLTDPKRF-SRAFPG-FKSVE-VEDGSFTIELRLSLGPLRGDAR--VRASFEDLEKPS----   83 (157)
T ss_dssp             EEEEEEEESSCHH-HHHHHHTCHHHH-GGGSTT-EEEEE-EETTEEEEEEEEESSSSEEEEE--EEEEEEEEETTT----
T ss_pred             EEeeEEEEcCCHH-HHHHHHcCHHHH-HhhCCC-ceEEE-ECCCEEEEEEEEEEcceeEEEE--EEEEEEecCCCc----
Confidence            4566667777777 789999999985 567765 56677 78888888753 2333333332  223332211211    


Q ss_pred             CCCcCcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHH
Q 024974          143 EVPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAES  222 (259)
Q Consensus       143 ~~~~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~  222 (259)
                                +|... ....|.  .   ..|.....=.|.+.  ++.|.|....++.++    .++..+...++....+.
T Consensus        84 ----------~i~~~-~~~~~~--~---~~~~~~~~~~l~~~--~~gT~v~~~~~~~~~----g~l~~~~~~~~~~~~~~  141 (157)
T 2ns9_A           84 ----------KATVK-GSGRGA--G---STLDFTLRFAVEPS--GGGSRVSWVFEGNVG----GLAASMGGRVLDSLARR  141 (157)
T ss_dssp             ----------EEEEE-EEEECS--S---EEEEEEEEEEEEEE--TTEEEEEEEEEEEEE----EGGGGSCHHHHHHHHHH
T ss_pred             ----------EEEEE-EEecCC--C---ccEEEEEEEEEEeC--CCcEEEEEEEEEEEC----cCHHHhhHHHHHHHHHH
Confidence                      12211 111221  1   13333333344443  356778777777654    44455556778888888


Q ss_pred             HHHHHHHHHHHHH
Q 024974          223 VLTRLIEDMKQKV  235 (259)
Q Consensus       223 vL~~Il~~i~~rl  235 (259)
                      ++++.+++++.++
T Consensus       142 ~~~~~~~~lk~~~  154 (157)
T 2ns9_A          142 MINDVISGVKREL  154 (157)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888777765

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=95.49  E-value=0.091  Score=42.58  Aligned_cols=142  Identities=15%  Similarity=0.210  Sum_probs=77.9

Q ss_pred             eeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEeecceeEeEEEeEEEEEEEEEcCCCccCCCCCCc
Q 024974           67 TDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPEVPQ  146 (259)
Q Consensus        67 ~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~~l~ff~~eV~PvV~lrV~~~~~G~~yp~~~~~  146 (259)
                      -++.|..+++ .+=+++.|.++|- +++|+ -.-.+..++|.|+..+..++.-+..+.=....++....++.        
T Consensus        11 ~s~~I~ap~e-~v~~lv~Dve~w~-~~yp~-~~p~~~~~~~~~~~~~a~l~vg~~~~~~~~~s~~~~~~~~~--------   79 (161)
T 3p9v_A           11 RDLEIPASYD-EVFDLLADVPKSA-SHFPK-VDKLVDLGNNAYRWEMEKVGVDKHAIQSVYACTYHADKEAG--------   79 (161)
T ss_dssp             EEEEESSCHH-HHHHHHTCHHHHH-TTSTT-EEEEEEEETTEEEEEECCBSSGGGCBCCEEEEEEEEETTTT--------
T ss_pred             EEEEEcCCHH-HHHHHHhChhhhH-hhCCC-eEEEEEcCCCceEEEEEEEeeeeEEEEEEEEEEEEEcCCCC--------
Confidence            3445566666 7889999999964 67865 66778888887777663333322222222334444444221        


Q ss_pred             CcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCCC-cceEEEEEEEEEEEEcCcceeccchHHHHHHHHHHHH
Q 024974          147 DITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGT-RSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESVLT  225 (259)
Q Consensus       147 ~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~-~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~vL~  225 (259)
                          .+..+++    .|        .|.-.+.|.-.-.+.+. .|.|.+.++....+.+++++        +.+...+++
T Consensus        80 ----~I~~~~~----~g--------~~~~~l~g~w~f~p~~~g~t~V~~~~~~e~~~pl~~ll--------~~~~~~~~~  135 (161)
T 3p9v_A           80 ----KITWSPI----KG--------EGNGVVSGSWTLSAKGDNATAVKFQTSAELTVPLPSLL--------KLAISPVIK  135 (161)
T ss_dssp             ----EEEEEEC----TT--------STTEEEEEEEEEEESSSSCEEEEEEEEEEEEECSCGGG--------HHHHHHHHH
T ss_pred             ----EEEEEEe----cC--------ccceeEEEEEEEEECCCCeEEEEEEEEEEEcCcchHHH--------HHHHHHHHH
Confidence                1122222    12        22223445444333333 46787777777765555543        445555666


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 024974          226 RLIEDMKQKVNGSLLQDY  243 (259)
Q Consensus       226 ~Il~~i~~rl~~qL~~DY  243 (259)
                      .+.++|...|..++.+=|
T Consensus       136 ~~~~~~v~af~~ra~~~~  153 (161)
T 3p9v_A          136 HEFNSLVDTYMANLKKAF  153 (161)
T ss_dssp             HHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666666666666554433

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=88.89  E-value=6.7  Score=30.26  Aligned_cols=38  Identities=13%  Similarity=0.031  Sum_probs=28.1

Q ss_pred             eeeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecC
Q 024974           65 IATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLN  105 (259)
Q Consensus        65 ~s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lg  105 (259)
                      .+..+.+..+++ .+=+++.|.+++ ..++|. -..++.++
T Consensus         4 ~~~s~~i~ap~~-~v~~~v~D~~~~-p~~~p~-~~~~~v~~   41 (148)
T 1t17_A            4 HVVTKVLPYTPD-QLFELVGDVDAY-PKFVPW-ITGMRTWN   41 (148)
T ss_dssp             EEEEEEESSCTH-HHHHHHTTTTCC-SSCCSS-CCCCCEEE
T ss_pred             EEEEEEecCCHH-HHHHHHHHHhhH-HhhCCC-cCeeEEEE
Confidence            445666777777 789999999994 667874 66677665

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=86.56  E-value=10  Score=29.78  Aligned_cols=138  Identities=9%  Similarity=0.121  Sum_probs=67.3

Q ss_pred             eeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEeecc-eeEeEEEeEEEEEEEEEcCCCccCCCCC
Q 024974           66 ATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPI-QFIFLTVKPVIDMRLRCKTGGKDYPPEV  144 (259)
Q Consensus        66 s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~~l-~ff~~eV~PvV~lrV~~~~~G~~yp~~~  144 (259)
                      +.++.+..+++ .+=+|+.|++++ -..+|. -..++.++++.++.++.-- +...++..    .++.....+.      
T Consensus         7 ~~s~~I~ap~e-~V~~~~~D~e~~-p~w~p~-~~~v~~~~~~~~~~~~~~~~G~~~~~~~----~~v~e~~p~~------   73 (155)
T 3ggn_A            7 RDAVTIGKPAE-QLYAVWRDLPGL-PLLMTH-LRSVEVLDDKRSRWTVEAPAPLGTVSWE----AELTADEPGK------   73 (155)
T ss_dssp             EEEEEESSCHH-HHHHHHHCGGGH-HHHSTT-CCEEEECSSSEEEEEEECCTTTCEEEEE----EEEEEEETTT------
T ss_pred             EEEEEEcCCHH-HHHHHHhCHHHh-HHHhhh-ceEEEEecCCeeEEEEEecCCcceEEEE----EEEEEecCCC------
Confidence            44556666676 789999999995 446654 6788899998888877542 21233332    2333222221      


Q ss_pred             CcCcceeEEEEEeeeee-cCcccccCCCceeEEeeee--EeecCCCCcceEEEEEEEEEEEEcCc-ceeccchHHHHHHH
Q 024974          145 PQDITKVLELDITRWEL-RDLENVIKPSQFSLSVKGA--LYSDRRGTRSRLKGQLEMNISFVLPP-VLALIPDDVRRNVA  220 (259)
Q Consensus       145 ~~~~~~~l~i~s~~~~l-~Gl~~v~~~~~F~l~l~g~--L~~~~~g~~t~L~g~~dL~V~v~lP~-~l~llP~~lle~tG  220 (259)
                              .|   .+++ .|....         ..|.  +.+.+.++.|+    +.+.+..++|. ++..+=..++....
T Consensus        74 --------~i---~~~~~~g~~~~---------~~g~~~F~~~~~~~gT~----V~~~~~~~~~~~~l~~~~~~~~~~~~  129 (155)
T 3ggn_A           74 --------RI---AWRSLPGARIE---------NSGEVLFRPAPGARGTE----VVVRLTYRPPGGSAGAVIARMFNQEP  129 (155)
T ss_dssp             --------EE---EEEECTTCSSC---------EEEEEEEEECSSSSCEE----EEEEEEEC----------------CH
T ss_pred             --------EE---EEEECCCCCcc---------eEEEEEEEECCCCCceE----EEEEEEEECCCcHHHHHHHHHhhhhH
Confidence                    12   2222 232111         2332  23332233443    44455556665 34433344555566


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 024974          221 ESVLTRLIEDMKQKVNGSLL  240 (259)
Q Consensus       221 ~~vL~~Il~~i~~rl~~qL~  240 (259)
                      +..++.-|+++|+.+..+|.
T Consensus       130 ~~~v~~~l~r~k~~~e~~~~  149 (155)
T 3ggn_A          130 SQQLRDDLMRFKREQELGLE  149 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHHhhhh
Confidence            77777777777777766653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	97.87
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	97.7
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	95.71
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	87.2

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=97.87  E-value=0.00019  Score=54.34  Aligned_cols=143  Identities=11%  Similarity=0.045  Sum_probs=91.8

Q ss_pred             eeeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEee-cceeEeEEEeEEEEEEEEEcCCCccCCCC
Q 024974           65 IATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQML-PIQFIFLTVKPVIDMRLRCKTGGKDYPPE  143 (259)
Q Consensus        65 ~s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~-~l~ff~~eV~PvV~lrV~~~~~G~~yp~~  143 (259)
                      .+.++++..+++ .+=+.|.|++++ ..|+|. -+.++.+++++|..++. +++++.....=.+.+.-......      
T Consensus         3 ~s~~~~i~~~~e-~v~~~l~D~~~~-~~~~Pg-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------   73 (147)
T d2pcsa1           3 GNGSIELKGTVE-EVWSKLMDPSIL-SKCIMG-CKSLELIGEDKYKADLQIGIAAVKGKYDAIIEVTDIKPPYH------   73 (147)
T ss_dssp             EEEEEEEESCHH-HHHHHHTCHHHH-HHHSTT-EEEEEEEETTEEEEEEEECCGGGCEEEEEEEEEEEEETTTE------
T ss_pred             CCceEEeCCCHH-HHHHHHcCHHHH-HhhCcc-hhhceecCCCEEEEEEEEeecceeeeeEEEEEEeccCcccc------
Confidence            355667787777 789999999995 679986 88899999999998877 56666666554444433333331      


Q ss_pred             CCcCcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHHH
Q 024974          144 VPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESV  223 (259)
Q Consensus       144 ~~~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~v  223 (259)
                              ..+.... .  +..     ....+...-.+. ...++.|.|.+++++++    ..+++.+...+++++.+.+
T Consensus        74 --------~~~~~~~-~--~~~-----~~~~~~~~~~~~-~~~~~~T~v~~~~~~~~----~g~l~~l~~~li~~~~~~~  132 (147)
T d2pcsa1          74 --------YKLLVNG-E--GGP-----GFVNAEGVIDLT-PINDECTQLTYTYSAEV----GGKVAAIGQRMLGGVAKLL  132 (147)
T ss_dssp             --------EEEEEEE-E--ETT-----EEEEEEEEEEEE-ESSSSEEEEEEEEEEEE----ESGGGGGCHHHHHHHHHHH
T ss_pred             --------eeEeecc-c--ccc-----chhcceeEEeee-cccCCcEEEEEEEEEEE----CcHHHHHHHHHHHHHHHHH
Confidence                    0111110 1  111     111222222222 23345677777777654    3567778888999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 024974          224 LTRLIEDMKQKVNG  237 (259)
Q Consensus       224 L~~Il~~i~~rl~~  237 (259)
                      ++..+++++.++..
T Consensus       133 ~~~f~~~~~~~l~~  146 (147)
T d2pcsa1         133 ISDFFKKIQKEIAK  146 (147)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999888888754

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.70  E-value=0.00089  Score=49.35  Aligned_cols=142  Identities=14%  Similarity=0.103  Sum_probs=90.2

Q ss_pred             EeeeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEeecceeEeEEEeEEEEEEEEEcCCCccCCCC
Q 024974           64 RIATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPE  143 (259)
Q Consensus        64 ~~s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~~l~ff~~eV~PvV~lrV~~~~~G~~yp~~  143 (259)
                      +.+.++.+.++++ .+=+||.|++++ ..++|. -+.++..+++...-...+...+..................      
T Consensus         4 k~e~si~I~ap~e-~Vw~~l~D~~~~-~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   74 (147)
T d2ns9a1           4 RYEGSFEVSKTPE-EVFEFLTDPKRF-SRAFPG-FKSVEVEDGSFTIELRLSLGPLRGDARVRASFEDLEKPSK------   74 (147)
T ss_dssp             EEEEEEEESSCHH-HHHHHHTCHHHH-GGGSTT-EEEEEEETTEEEEEEEEESSSSEEEEEEEEEEEEEETTTE------
T ss_pred             EEEEEEEEcCCHH-HHHHHHhCHhhh-hhcccc-hhheeecccccceeEEEEEEEEeeEeeeeeeeeeecCCcc------
Confidence            4566788888887 799999999995 568875 6666655554444444455555555555554444444441      


Q ss_pred             CCcCcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHHH
Q 024974          144 VPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESV  223 (259)
Q Consensus       144 ~~~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~v  223 (259)
                                .........|        .......+.....+.++.|.|.+..++.    ++.++..++..++++.-..+
T Consensus        75 ----------~~~~~~~~~~--------~~~~~~~~~~~l~~~~~gt~v~~~~~~~----~~g~~~~l~~~~v~~~~~~~  132 (147)
T d2ns9a1          75 ----------ATVKGSGRGA--------GSTLDFTLRFAVEPSGGGSRVSWVFEGN----VGGLAASMGGRVLDSLARRM  132 (147)
T ss_dssp             ----------EEEEEEEECS--------SEEEEEEEEEEEEEETTEEEEEEEEEEE----EEEGGGGSCHHHHHHHHHHH
T ss_pred             ----------eeEEEeeecc--------ccceeeEEEEEEEecCCCcEEEEEEEEE----eCccHHHHHHHHHHHHHHHH
Confidence                      1111111222        2222244444445556667676666554    45678888899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 024974          224 LTRLIEDMKQKVN  236 (259)
Q Consensus       224 L~~Il~~i~~rl~  236 (259)
                      ++..++.|++++.
T Consensus       133 ~~~~l~~lk~~~~  145 (147)
T d2ns9a1         133 INDVISGVKRELG  145 (147)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999874

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=95.71  E-value=0.06  Score=39.76  Aligned_cols=137  Identities=8%  Similarity=0.093  Sum_probs=75.5

Q ss_pred             eeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCC--cEEEEeecceeEeEEEeEEEEEEEEEcCCCccCCCC
Q 024974           66 ATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNED--EWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPE  143 (259)
Q Consensus        66 s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~--~yRl~m~~l~ff~~eV~PvV~lrV~~~~~G~~yp~~  143 (259)
                      +..+-|.++++ .+=+||.|.+++ ...+|. -..++-++++  ..+..+ .+.+.+.....++.+.... .+.      
T Consensus         4 ~~~~~I~ap~~-~V~~~l~D~~~~-~~w~p~-~~~~~il~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~------   72 (146)
T d2d4ra1           4 RAERYIPAPPE-RVYRLAKDLEGL-KPYLKE-VESLEVVAREGARTRSRW-VAVAMGKKVRWLEEEEWDD-ENL------   72 (146)
T ss_dssp             EEEEEESSCHH-HHHHHHHCHHHH-GGGCTT-EEEEEEEEEETTEEEEEE-EEEETTEEEEEEEEEEEET-TTT------
T ss_pred             EEEEEECCCHH-HHHHHHHChhhH-Hhhccc-cEEEEEEEecCCcceEEE-EEEeeeeeEEEEEEEEEcC-CCC------
Confidence            45667777777 899999999996 557764 6666666543  333332 3334444444444333322 222      


Q ss_pred             CCcCcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHHH
Q 024974          144 VPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESV  223 (259)
Q Consensus       144 ~~~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~v  223 (259)
                             .+.....    .| + .   ..    +.|.....+.++.|.|.+.++..+.  + +++..++..++++.-+.-
T Consensus        73 -------~i~~~~~----~g-~-~---~~----~~g~w~l~~~~~gT~v~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~  129 (146)
T d2d4ra1          73 -------RNRFFSP----EG-D-F---DR----YEGTWVFLPEGEGTRVVLTLTYELT--I-PIFGGLLRKLVQKLMQEN  129 (146)
T ss_dssp             -------EEEEEEE----EE-S-C---SE----EEEEEEEEECSSSEEEEEEEEEECC--C-TTTTTTTHHHHHHHHHHH
T ss_pred             -------EEEEEEc----cC-C-c---ce----EEEEEEEEecCCceEEEEEEEEEEc--C-ccHHHHHHHHHHHHHHHH
Confidence                   1122222    12 1 1   12    3333333444555777777666543  2 344556777777777777


Q ss_pred             HHHHHHHHHHHHH
Q 024974          224 LTRLIEDMKQKVN  236 (259)
Q Consensus       224 L~~Il~~i~~rl~  236 (259)
                      +++.++.++.|+.
T Consensus       130 ~~~~l~~l~~~~~  142 (146)
T d2d4ra1         130 VESLLKGLEERVL  142 (146)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777777654

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=87.20  E-value=4.1  Score=29.59  Aligned_cols=135  Identities=12%  Similarity=0.080  Sum_probs=77.9

Q ss_pred             EeeeeeeecCCCCCcHHHHhccCCceeeeccCCCccceeecCCCcEEEEeecceeEeEEEeEEEEEEEEEcCCCccCCCC
Q 024974           64 RIATDIPLYESPGALFDQYLEDKPRVFNAMFPDNKQRSQRLNEDEWRIQMLPIQFIFLTVKPVIDMRLRCKTGGKDYPPE  143 (259)
Q Consensus        64 ~~s~~~~v~e~~~~~i~~YL~~p~rv~~a~~pD~~~rie~Lgd~~yRl~m~~l~ff~~eV~PvV~lrV~~~~~G~~yp~~  143 (259)
                      +-+..+.|.++++ .+=+++.|..++ ..-+|. -..++..++|..|.--    +-   --..+.-++..-++...    
T Consensus         3 ~~~~si~I~A~pe-~VW~~v~df~~~-~~W~p~-v~~~~~~~~G~~R~~~----~~---~g~~~~E~l~~~d~~~~----   68 (138)
T d3cnwa1           3 HTTTSMEIFGSPE-QVWQLIGGFNSL-PDWLPY-IPSSKLTEGGRVRHLA----NP---DGDTIIERLEVFNDKER----   68 (138)
T ss_dssp             EEEEEEEESSCHH-HHHHHHCCTTCG-GGTCTT-CSEEEEEGGGTEEEEE----CT---TCCEEEEEEEEEETTTT----
T ss_pred             cEEEEEEEeCCHH-HHHHHHhCccch-HHHhcc-cceeEeecCceeEEEE----ec---CCceeEEEEEEEeCCCc----
Confidence            4566788888888 789999999985 455664 6677777888776421    11   11223344444333221    


Q ss_pred             CCcCcceeEEEEEeeeeecCcccccCCCceeEEeeeeEeecCCCCcceEEEEEEEEEEEEcCcceeccchHHHHHHHHHH
Q 024974          144 VPQDITKVLELDITRWELRDLENVIKPSQFSLSVKGALYSDRRGTRSRLKGQLEMNISFVLPPVLALIPDDVRRNVAESV  223 (259)
Q Consensus       144 ~~~~~~~~l~i~s~~~~l~Gl~~v~~~~~F~l~l~g~L~~~~~g~~t~L~g~~dL~V~v~lP~~l~llP~~lle~tG~~v  223 (259)
                             .+.-++.+    | +.-.  .+|...  =.|.+..+|+.|.|+|..+..     |.  .. +...++..-+++
T Consensus        69 -------~~~y~~~~----~-~~p~--~~~~~~--~~l~p~~~g~~t~v~w~~~f~-----p~--~~-~~~~~~~~~~~~  124 (138)
T d3cnwa1          69 -------YYTYSIMN----A-PFPV--TNYLST--IQVKEGTESNTSLVEWSGTFT-----PV--EV-SDEEAINLFHGI  124 (138)
T ss_dssp             -------EEEEEEEE----C-SSSE--EEEEEE--EEEEECSSTTCEEEEEEEEEE-----ES--SS-CHHHHHHHHHHH
T ss_pred             -------EEEEEEec----C-CCcc--eeeEEE--EEEEECCCCCeEEEEEEEEEe-----cC--CC-CHHHHHHHHHHH
Confidence                   22333332    1 1111  133222  245555566678899977664     22  12 334456667788


Q ss_pred             HHHHHHHHHHHHH
Q 024974          224 LTRLIEDMKQKVN  236 (259)
Q Consensus       224 L~~Il~~i~~rl~  236 (259)
                      .+.-|..|+++|.
T Consensus       125 ~~~~l~~L~~~f~  137 (138)
T d3cnwa1         125 YSDGLKALQQAFL  137 (138)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhc
Confidence            8888999988875