Citrus Sinensis ID: 024975

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVRTKKCSRMG
Secondary Structure (PSIPRED)
cccEEEEEcccHHHHHHHHHHHHccccEEEEEEccccccEEEcccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEccEEEEEEEcccccEEEEEEEccccEEEEEEcEEEEccccccccccccccccccccccEEEcccccccccccccEEEEEcccccHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccHHHHHHHHHHHHccccEEEEEEccccccEEEEccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHEEEEEEEEEEEEEEccccEEEEEEEcccccEEEEEEEEEEEEcccccccccccccccccccccEEEcccccccccccccEEEEEEccccHHHHHHHHHHHHHHHEEEcccccEEEEEEccccccccccHHHHHccccccc
Coil and Loop (DISEMBL)
MFRHVAVIGAGAAGLVVGHELLREGHTVVVyekgeqvggswiytsetesdplgvdpnrypvhssLYKSLRVnlprelmgfqaypfvarnyegsvdlrrypghEEVLRYLQNFAREFGVDQVVRLHTEVLNARLvesnkwkvksrkkddvveEETFDAVVVCnghfsvprlaqvpgidswpgkqmhshnyripnpfqDQVVILIGHYASGLDIKRDLAGFAKEVHIasrsvadethekqpgydnmwlHSMVRtkkcsrmg
Flexible Loop (DISEMBL)
MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTsetesdplgvdpNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLnarlvesnkwkvksrkkddvveEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIasrsvadethekqpgydnmwlhsmvrtkkcsrmg
Low Complexity Region (SEG)
MFRHvavigagaaglvvgHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVRTKKCSRMG
Disordered region (IsUnstruct)
***HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSE*****LGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS***************NMWLH************
Disordered Region (DISOPRED)
MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVRTKKCSRMG
Disordered Region (DISEMBL)
MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK************EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVRTKKCSRMG
Disordered Region (DISPRO)
*FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVRTKKCSRMG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVRTKKCSRMG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q9SXE1	462	Flavin-containing monooxy	yes	no	0.965	0.541	0.545	2e-81
Q9FWW9	465	Flavin-containing monooxy	no	no	0.969	0.539	0.595	2e-81
Q9SXD5	450	Flavin-containing monooxy	no	no	0.957	0.551	0.581	5e-81
Q9SS04	459	Flavin-containing monooxy	no	no	0.953	0.538	0.574	7e-81
Q9C8U0	450	Flavin-containing monooxy	no	no	0.957	0.551	0.577	1e-80
A8MRX0	459	Flavin-containing monooxy	no	no	0.957	0.540	0.6	9e-80
Q9FWW6	468	Flavin-containing monooxy	no	no	0.938	0.519	0.568	4e-78
Q94BV5	452	Flavin-containing monooxy	no	no	0.961	0.550	0.578	8e-77
Q93Y23	461	Flavin-containing monooxy	no	no	0.961	0.540	0.577	1e-76
Q94K43	457	Flavin-containing monooxy	no	no	0.961	0.544	0.577	1e-74

>sp|Q9SXE1|GSOX3_ARATH Flavin-containing monooxygenase FMO GS-OX3 OS=Arabidopsis thaliana GN=FMOGS-OX3 PE=2 SV=1

 Score =  302 bits (773), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 137/251 (54%), Positives = 192/251 (76%), Gaps = 1/251 (0%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           +HVAVIGAG AGL+   EL REGH+VVV+E+ +QVGG W+YT +++SDPL +DP R  VH
Sbjct: 11  KHVAVIGAGPAGLITSRELRREGHSVVVFEREKQVGGLWVYTPKSDSDPLSLDPTRSKVH 70

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SS+Y+SLR N+PRE MG + +PF+ R  + S D RRYP H EVL Y+Q+FAREF +++++
Sbjct: 71  SSIYESLRTNVPRESMGVRDFPFLPRFDDESRDARRYPNHREVLAYIQDFAREFKIEEMI 130

Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
           R  TEV+    V++  W+V+S+     +E+E +DAVVVCNGH++ P +A +PGI SWPGK
Sbjct: 131 RFETEVVRVEPVDNGNWRVQSKNSGGFLEDEIYDAVVVCNGHYTEPNIAHIPGIKSWPGK 190

Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK-QPGY 241
           Q+HSHNYR+P+PF+++VV++IG++ASG DI RD+A  AKEVHIASR+    T+EK     
Sbjct: 191 QIHSHNYRVPDPFENEVVVVIGNFASGADISRDIAKVAKEVHIASRAREPHTYEKISVPQ 250

Query: 242 DNMWLHSMVRT 252
           +N+W+HS + T
Sbjct: 251 NNLWMHSEIDT 261

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Prefers probably short-chain methylthioalkyl glucosinolates in cv. Landsberg erecta.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: -EC: .EC: -

>sp|Q9FWW9|GSXL2_ARATH Flavin-containing monooxygenase FMO GS-OX-like 2 OS=Arabidopsis thaliana GN=At1g12200 PE=2 SV=1

 Score =  302 bits (773), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 153/257 (59%), Positives = 196/257 (76%), Gaps = 6/257 (2%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           RHVAVIGAGAAGLV   EL REGH+VVV E+G Q+GG W YTS+ E DPL +DP R  VH
Sbjct: 12  RHVAVIGAGAAGLVAARELRREGHSVVVLERGSQIGGVWAYTSQVEPDPLSLDPTRPVVH 71

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SSLY+SLR N+PRE MGF  +PF  R ++GS D RR+P H EVL YL++FA+EF ++++V
Sbjct: 72  SSLYRSLRTNIPRECMGFTDFPFATRPHDGSRDPRRHPAHTEVLAYLRDFAKEFDIEEMV 131

Query: 123 RLHTEVLNARLV-----ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
           R  TEV+ A  V     E  KW+V+SR  D VV +E +DAVVVCNGH++ PR A + GID
Sbjct: 132 RFETEVVKAEQVAAEGEERGKWRVESRSSDGVV-DEIYDAVVVCNGHYTEPRHALITGID 190

Query: 178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
           SWPGKQ+HSHNYR+P+ F+DQVVI+IG  ASG+DI RD+A  AKEVH++SRS + +T+EK
Sbjct: 191 SWPGKQIHSHNYRVPDQFKDQVVIVIGSSASGVDICRDIAQVAKEVHVSSRSTSPDTYEK 250

Query: 238 QPGYDNMWLHSMVRTKK 254
             GY+N+WLHS ++  +
Sbjct: 251 LTGYENLWLHSTIQIAR 267

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9SXD5|GSXL3_ARATH Flavin-containing monooxygenase FMO GS-OX-like 3 OS=Arabidopsis thaliana GN=At1g62620 PE=2 SV=2

 Score =  300 bits (769), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 147/253 (58%), Positives = 189/253 (74%), Gaps = 5/253 (1%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
           HVAVIGAG AGLV   EL REGH+VVV+EK +QVGG+WIYT E ESDPL VDP R  VHS
Sbjct: 12  HVAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVVHS 71

Query: 64  SLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR 123
           S+Y+SLR+N  RE  G++ +PFV R+   S D RR+P H EVL YL++FA+EFG++++VR
Sbjct: 72  SVYRSLRINGTRECTGYRDFPFVVRS-GVSRDPRRFPSHGEVLAYLKDFAKEFGIEEMVR 130

Query: 124 LHTEVLNARLVESN---KWKVKSRKKDDVVE-EETFDAVVVCNGHFSVPRLAQVPGIDSW 179
             TEV+           KW+++S +K+  V  +E +DAVVVCNGH+  PRLAQ+PGI SW
Sbjct: 131 FETEVVKVSPAAEEGIGKWRIESTEKEKKVRRDEIYDAVVVCNGHYVEPRLAQIPGISSW 190

Query: 180 PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP 239
           PGK+MHSHNYRIP PF+D+VV+LIG+ +S  DI RD+A  AKEVH+A RS   +T  KQ 
Sbjct: 191 PGKEMHSHNYRIPEPFRDKVVVLIGNSSSAEDISRDIARVAKEVHVACRSNPADTFIKQT 250

Query: 240 GYDNMWLHSMVRT 252
           GY+N+W HSM+ +
Sbjct: 251 GYNNLWTHSMIES 263

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9SS04|GSOX1_ARATH Flavin-containing monooxygenase FMO GS-OX1 OS=Arabidopsis thaliana GN=FMOGS-OX1 PE=2 SV=1

 Score =  300 bits (768), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 143/249 (57%), Positives = 187/249 (75%), Gaps = 2/249 (0%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           +HVAVIGAGAAGLV   EL REGHTVVV+++ +QVGG W Y+S+ +SDPL +D  R  VH
Sbjct: 11  KHVAVIGAGAAGLVTARELRREGHTVVVFDREKQVGGLWNYSSKADSDPLSLDTTRTIVH 70

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           +S+Y+SLR NLPRE MGF  +PFV R ++ S D RRYP H EVL YLQ+FAREF ++++V
Sbjct: 71  TSIYESLRTNLPRECMGFTDFPFVPRIHDISRDSRRYPSHREVLAYLQDFAREFKIEEMV 130

Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
           R  TEV+    V + KW V+S+        E FDAVVVC+GHF+ P +A +PGI SWPGK
Sbjct: 131 RFETEVVCVEPV-NGKWSVRSKNSVGFAAHEIFDAVVVCSGHFTEPNVAHIPGIKSWPGK 189

Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GY 241
           Q+HSHNYR+P PF ++VV++IG+YASG DI RD+A  AKEVHIASR+   +T++K P   
Sbjct: 190 QIHSHNYRVPGPFNNEVVVVIGNYASGADISRDIAKVAKEVHIASRASESDTYQKLPVPQ 249

Query: 242 DNMWLHSMV 250
           +N+W+HS +
Sbjct: 250 NNLWVHSEI 258

Catalyzes the conversion of methylthioalkyl glucosinolates into methylsulfinylalkyl glucosinolates. Able to S-oxygenate both desulfo- and intact 4-methylthiobutyl glucosinolates, but no activity with methionine, dihomomethionine or 5-methylthiopentaldoxime.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9C8U0|GSXL5_ARATH Flavin-containing monooxygenase FMO GS-OX-like 5 OS=Arabidopsis thaliana GN=At1g63370 PE=2 SV=2

 Score =  299 bits (765), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 146/253 (57%), Positives = 188/253 (74%), Gaps = 5/253 (1%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
           HVAVIGAG AGLV   EL REGH+VVV+EK +QVGG+WIYT E ESDPL VDP R  VHS
Sbjct: 12  HVAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVVHS 71

Query: 64  SLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR 123
           S+Y+SLR+N  RE  G++ +PFV R+   S D RR+P H EVL YL++FA+EFG++++VR
Sbjct: 72  SVYRSLRINGTRECTGYRDFPFVVRS-GVSRDRRRFPSHGEVLAYLKDFAKEFGIEEMVR 130

Query: 124 LHTEVLNARLVESN---KWKVKSRKKDDVVE-EETFDAVVVCNGHFSVPRLAQVPGIDSW 179
             TEV+           KW+++S +K+  V  +E +DAVVVCNGH+  PRLAQ+PGI SW
Sbjct: 131 FETEVVKVSPAAEEGIGKWRIESTEKEKKVRRDEIYDAVVVCNGHYVEPRLAQIPGISSW 190

Query: 180 PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP 239
           PGK+MHSHNYRIP PF+D+V +LIG+ +S  DI RD+A  AKEVH+A RS   +T  KQ 
Sbjct: 191 PGKEMHSHNYRIPEPFRDKVAVLIGNSSSAEDISRDIARVAKEVHVACRSNPADTFIKQT 250

Query: 240 GYDNMWLHSMVRT 252
           GY+N+W HSM+ +
Sbjct: 251 GYNNLWTHSMIES 263

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|A8MRX0|GSOX5_ARATH Flavin-containing monooxygenase FMO GS-OX5 OS=Arabidopsis thaliana GN=FMOGS-OX5 PE=2 SV=2

 Score =  296 bits (758), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 150/250 (60%), Positives = 192/250 (76%), Gaps = 2/250 (0%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
           +VAVIGAGAAGLV   EL RE HTVVV+E+  +VGG W+YT  +E DPL +DPNR  VHS
Sbjct: 12  NVAVIGAGAAGLVAARELRRENHTVVVFERDSKVGGLWVYTPNSEPDPLSLDPNRTIVHS 71

Query: 64  SLYKSLRVNLPRELMGFQAYPFVARNYEG-SVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           S+Y SLR NLPRE MG++ +PFV R  +  S D RRYP H EVL YL++FAREF + ++V
Sbjct: 72  SVYDSLRTNLPRECMGYRDFPFVPRPEDDESRDSRRYPSHREVLAYLEDFAREFKLVEMV 131

Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
           R  TEV+     E  KW+V+S+  D + ++E FDAVVVCNGH++ PR+A VPGIDSWPGK
Sbjct: 132 RFKTEVVLVE-PEDKKWRVQSKNSDGISKDEIFDAVVVCNGHYTEPRVAHVPGIDSWPGK 190

Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYD 242
           Q+HSHNYR+P+ F+DQVV++IG++ASG DI RD+ G AKEVHIASRS   +T+ K PG +
Sbjct: 191 QIHSHNYRVPDQFKDQVVVVIGNFASGADISRDITGVAKEVHIASRSNPSKTYSKLPGSN 250

Query: 243 NMWLHSMVRT 252
           N+WLHSM+ +
Sbjct: 251 NLWLHSMIES 260

Catalyzes the conversion of methylthioalkyl glucosinolates into methylsulfinylalkyl glucosinolates. Specific for 8-methylthiooctyl (8-MTO) glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9FWW6|GSXL1_ARATH Flavin-containing monooxygenase FMO GS-OX-like 1 OS=Arabidopsis thaliana GN=At1g12160 PE=2 SV=1

 Score =  291 bits (744), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 142/250 (56%), Positives = 183/250 (73%), Gaps = 7/250 (2%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           RHVAVIG GAAGLV   EL REGHTV+ +E+ + VGG W+YT   +SD + VDP+R  VH
Sbjct: 10  RHVAVIGLGAAGLVAVRELRREGHTVIGFEREKHVGGLWVYTDRVDSDSVSVDPDRTIVH 69

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SS+Y+SLR NLPRE MG+  +PFV R+ +G  D RRYP H EVL YLQ+FA+EF ++ ++
Sbjct: 70  SSIYQSLRTNLPRECMGYSDFPFVTRSSDG--DPRRYPDHREVLMYLQDFAKEFKIEDMI 127

Query: 123 RLHTEVLNARLVESN--KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWP 180
           R  TEVL       N  KW+V+ +  + V  EE FDAVVVCNGHF+ PRLA +PGI+SWP
Sbjct: 128 RFETEVLCVEPSPENNRKWRVQFKSSNGVSGEEIFDAVVVCNGHFTEPRLAHIPGIESWP 187

Query: 181 GKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPG 240
           GKQ+HSHNYRIP+PF+D+VVI+IG  ASG DI  D+A  AKEVHI+S+ VA +++     
Sbjct: 188 GKQIHSHNYRIPDPFKDEVVIVIGSQASGNDISTDIATIAKEVHISSKMVASDSYG---C 244

Query: 241 YDNMWLHSMV 250
           YDN+ +H  +
Sbjct: 245 YDNLRIHPTI 254

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q94BV5|GSXL4_ARATH Flavin-containing monooxygenase FMO GS-OX-like 4 OS=Arabidopsis thaliana GN=At1g62600 PE=2 SV=1

 Score =  286 bits (733), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 147/254 (57%), Positives = 191/254 (75%), Gaps = 5/254 (1%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
           HVAVIGAGAAGLV   EL REGH+VVV+E+ +QVGG+WIYT   E DPL VDP R  VHS
Sbjct: 12  HVAVIGAGAAGLVAARELRREGHSVVVFERQKQVGGTWIYTDHIEPDPLSVDPTRSVVHS 71

Query: 64  SLYKSLRVNLPRELMGFQAYPFVAR-NYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           S+Y SLR NLPRE MG++ +PFV R +   S D RR+P H EVL YLQ+FA+EF +++++
Sbjct: 72  SVYGSLRTNLPRECMGYRDFPFVIRSDVSESRDPRRFPSHGEVLAYLQDFAKEFAIEEMI 131

Query: 123 RLHTEVLNARLVE---SNKWKVKSRKKDD-VVEEETFDAVVVCNGHFSVPRLAQVPGIDS 178
           R  T V+         S KW+++S +K+  V+ +E +DAVVVCNGH+  PR A++PGI S
Sbjct: 132 RFDTAVVKVAPAAEEGSGKWRIESTEKEKKVLRDEIYDAVVVCNGHYIEPRHAEIPGISS 191

Query: 179 WPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQ 238
           WPGK+MHSHNYRIP PF+DQVV+LIG+ AS  DI RD+A  AKEVH+A RS A +T+ ++
Sbjct: 192 WPGKEMHSHNYRIPEPFRDQVVVLIGNSASADDISRDIARVAKEVHVACRSNAADTYIER 251

Query: 239 PGYDNMWLHSMVRT 252
           PGY N+W+HSM+ +
Sbjct: 252 PGYSNLWMHSMIES 265

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q93Y23|GSOX4_ARATH Flavin-containing monooxygenase FMO GS-OX4 OS=Arabidopsis thaliana GN=FMOGS-OX4 PE=2 SV=1

 Score =  286 bits (732), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 145/251 (57%), Positives = 191/251 (76%), Gaps = 2/251 (0%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           +HVAVIGAGAAGLV   EL REGHTVVV ++ +QVGG W+YT ETESD LG+DP R  VH
Sbjct: 11  QHVAVIGAGAAGLVAARELRREGHTVVVLDREKQVGGLWVYTPETESDELGLDPTRPIVH 70

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SS+YKSLR NLPRE MG++ +PFV R  + S D RRYP H EVL YLQ+FA EF +++++
Sbjct: 71  SSVYKSLRTNLPRECMGYKDFPFVPRGDDPSRDSRRYPSHREVLAYLQDFATEFNIEEMI 130

Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
           R  TEVL    V + KW+V+S+       +E +DAVV+C GHF+ P +AQ+PGI+SWPG+
Sbjct: 131 RFETEVLRVEPV-NGKWRVQSKTGGGFSNDEIYDAVVMCCGHFAEPNIAQIPGIESWPGR 189

Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GY 241
           Q HSH+YR+P+PF+D+VV++IG++ASG DI RD++  AKEVHIASR+    T EK+P   
Sbjct: 190 QTHSHSYRVPDPFKDEVVVVIGNFASGADISRDISKVAKEVHIASRASKSNTFEKRPVPN 249

Query: 242 DNMWLHSMVRT 252
           +N+W+HS + T
Sbjct: 250 NNLWMHSEIDT 260

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q94K43|GSOX2_ARATH Flavin-containing monooxygenase FMO GS-OX2 OS=Arabidopsis thaliana GN=FMOGS-OX2 PE=2 SV=1

 Score =  280 bits (715), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 145/251 (57%), Positives = 188/251 (74%), Gaps = 2/251 (0%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           +HV VIGAGAAGLV   EL REGHTVVV E+ ++VGG WIY+ + ESDPL +DP R  VH
Sbjct: 11  QHVVVIGAGAAGLVAARELSREGHTVVVLEREKEVGGLWIYSPKAESDPLSLDPTRSIVH 70

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SS+Y+SLR NLPRE MGF  +PFV R  + S D RRYP H EVL YLQ+FAREF ++++V
Sbjct: 71  SSVYESLRTNLPRECMGFTDFPFVPRFDDESRDSRRYPSHMEVLAYLQDFAREFNLEEMV 130

Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
           R   EV+    V + KW+V S+    V  +E FDAVVVC+GH++ P +A +PGI SWPGK
Sbjct: 131 RFEIEVVRVEPV-NGKWRVWSKTSGGVSHDEIFDAVVVCSGHYTEPNVAHIPGIKSWPGK 189

Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GY 241
           Q+HSHNYR+P PF+++VV++IG++ASG DI RD+A  AKEVHIASR+   +T+EK P   
Sbjct: 190 QIHSHNYRVPGPFENEVVVVIGNFASGADISRDIAKVAKEVHIASRASEFDTYEKLPVPR 249

Query: 242 DNMWLHSMVRT 252
           +N+W+HS + T
Sbjct: 250 NNLWIHSEIDT 260

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
255577823	423	dimethylaniline monooxygenase, putative	0.961	0.588	0.643	4e-92
224125168	459	predicted protein [Populus trichocarpa]	0.961	0.542	0.629	4e-90
237682454	461	flavin-monooxygenase [Brassica rapa subs	0.961	0.540	0.581	8e-82
224125164	452	predicted protein [Populus trichocarpa]	0.961	0.550	0.611	1e-81
237682456	459	flavin-monooxygenase [Brassica rapa subs	0.965	0.544	0.607	2e-81
297840275	461	flavin-containing monooxygenase family p	0.961	0.540	0.577	3e-81
224123136	464	predicted protein [Populus trichocarpa]	0.949	0.530	0.621	3e-81
357481971	471	Flavin-containing monooxygenase FMO GS-O	0.953	0.524	0.633	4e-81
116293735	461	FMO-like protein [Eutrema halophilum]	0.957	0.537	0.568	6e-81
297844078	465	flavin-containing monooxygenase family p	0.969	0.539	0.603	7e-81

>gi|255577823|ref|XP_002529785.1| dimethylaniline monooxygenase, putative [Ricinus communis] gi|223530729|gb|EEF32599.1| dimethylaniline monooxygenase, putative [Ricinus communis]

 Score =  343 bits (880), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 164/255 (64%), Positives = 202/255 (79%), Gaps = 6/255 (2%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           RHVAVIGAGA+GLV   EL REGH VVV+E+  Q+GG+W+Y    E DPLG+DPNR  +H
Sbjct: 8   RHVAVIGAGASGLVTARELRREGHEVVVFERQSQIGGTWVYDPRVEPDPLGLDPNRTIIH 67

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SSLYKSLR NLPRELMGF+ YPF+ +N +G  D RRYP H EVL YLQ+FA+EF ++++V
Sbjct: 68  SSLYKSLRTNLPRELMGFKDYPFIPKN-DGMRDPRRYPCHREVLLYLQDFAKEFEIEEMV 126

Query: 123 RLHTEVLNARLVE-SNKWKVKSRKKD-DV---VEEETFDAVVVCNGHFSVPRLAQVPGID 177
           R  TEV+   LVE SNKWKV+S+KK  D+     +E +DAVVVCNGHF+ PR+A +PGI 
Sbjct: 127 RFGTEVVYVELVEDSNKWKVRSKKKRLDLYFDFSDEVYDAVVVCNGHFTEPRVADIPGIS 186

Query: 178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
           SWPGKQMH HNYR+P PF+D+VVILIG   S  D+ R++AG AKEVH+ASRSVADET+E+
Sbjct: 187 SWPGKQMHCHNYRVPEPFKDRVVILIGCATSATDLSREIAGVAKEVHVASRSVADETYEE 246

Query: 238 QPGYDNMWLHSMVRT 252
           QPGYDN+WLHSM+  
Sbjct: 247 QPGYDNIWLHSMIEC 261

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125168|ref|XP_002329910.1| predicted protein [Populus trichocarpa] gi|222871147|gb|EEF08278.1| predicted protein [Populus trichocarpa]

 Score =  337 bits (863), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 165/262 (62%), Positives = 202/262 (77%), Gaps = 13/262 (4%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           RHVAVIGAGAAGLV   EL REGH VVV+E+  QVGG+W+Y    E DPL +DPNR  +H
Sbjct: 12  RHVAVIGAGAAGLVSARELRREGHDVVVFERDNQVGGTWVYNPRVEPDPLSLDPNRRIIH 71

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SSLY SLR NLPRE+MGF+ YPF+A+N +   D RR+PGH EVL YLQ+FA EFG++++V
Sbjct: 72  SSLYSSLRTNLPREVMGFKDYPFIAKN-DKKRDQRRFPGHREVLLYLQDFASEFGIEEMV 130

Query: 123 RLHTEVLNARLVESN--KWKVKSRKK---DDV-------VEEETFDAVVVCNGHFSVPRL 170
           R  TEV++   VE N  KW V+S++K   DD        V+EE +DAVV+CNGH++ PR+
Sbjct: 131 RFDTEVVHVGPVEDNIGKWIVRSKRKISDDDREVSFGFDVDEEIYDAVVICNGHYTEPRI 190

Query: 171 AQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230
           AQ+PGI SWPGKQMHSHNYR P  FQDQV ILIG  AS  DI R++AG AKEVH+ASRSV
Sbjct: 191 AQIPGISSWPGKQMHSHNYRTPEGFQDQVAILIGSSASSDDISREIAGVAKEVHVASRSV 250

Query: 231 ADETHEKQPGYDNMWLHSMVRT 252
           ADET+++QPGYDNMWLHSM+ +
Sbjct: 251 ADETYQEQPGYDNMWLHSMIES 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|237682454|gb|ACR10274.1| flavin-monooxygenase [Brassica rapa subsp. pekinensis]

 Score =  309 bits (791), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 146/251 (58%), Positives = 194/251 (77%), Gaps = 2/251 (0%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           +HVAVIGAGA+GL+   EL REGHTVVV+E+ +QVGG WIY+ ++ESDPLG+DP R  VH
Sbjct: 11  KHVAVIGAGASGLIAARELHREGHTVVVFEREKQVGGLWIYSPKSESDPLGLDPTRPIVH 70

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SS+Y+SLR NLPRE MGF+ +PFV    + S D RRYP H EVL YLQ+FAREF ++++V
Sbjct: 71  SSVYESLRTNLPRECMGFRDFPFVPCVDDFSRDSRRYPSHREVLAYLQDFAREFKIEEMV 130

Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
           R  TEV+    V+  KW+V+S+  DD+ E+E FDAVVVC+GH++ P +A +PGI SWPGK
Sbjct: 131 RFETEVVRVEPVD-GKWRVRSKNSDDLSEDEIFDAVVVCSGHYTEPYVAHIPGIKSWPGK 189

Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK-QPGY 241
           Q+HSHNYR+P PF+++VV++IG++ASG DI RD+A  AKEVH+ASR     T+EK     
Sbjct: 190 QIHSHNYRVPGPFKNEVVVVIGNFASGADISRDVAKVAKEVHVASRGSEASTYEKLSVPT 249

Query: 242 DNMWLHSMVRT 252
           +N+W+HS + T
Sbjct: 250 NNLWIHSEIET 260

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125164|ref|XP_002329909.1| predicted protein [Populus trichocarpa] gi|222871146|gb|EEF08277.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 156/255 (61%), Positives = 201/255 (78%), Gaps = 6/255 (2%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           RHVAVIGAGAAGLV   EL REGH VVV+EK  Q+GG+W+YT + E+DPLG+DP R+ VH
Sbjct: 12  RHVAVIGAGAAGLVAARELRREGHQVVVFEKDSQIGGTWVYTPQVETDPLGLDPTRHIVH 71

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           +SLYKSLR NLPRE MGF  YPFV R  EGS D RR+PGH EVL+YLQ+FAREFG++++V
Sbjct: 72  TSLYKSLRTNLPRESMGFMDYPFVTRAGEGS-DPRRFPGHAEVLKYLQDFAREFGIEEMV 130

Query: 123 RLHTEVLNARLVESNKWKVKSRK-----KDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
           R   EV++  +V++ K KVK ++      DD + +E FDAVVVCNGHF+ PR+A++PGI+
Sbjct: 131 RFECEVVSVEMVDNEKLKVKCKRMRPDGGDDDLLDEVFDAVVVCNGHFTYPRIAEIPGIN 190

Query: 178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
            WPG Q+HSHNYR P  F+D+VVILIG  AS +D+  ++ G AKEVHIASRSVA++T+EK
Sbjct: 191 LWPGMQIHSHNYRTPELFKDKVVILIGSSASAIDLSLEIGGIAKEVHIASRSVANDTYEK 250

Query: 238 QPGYDNMWLHSMVRT 252
           +   DN+WLHSM+++
Sbjct: 251 RAECDNIWLHSMIKS 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|237682456|gb|ACR10275.1| flavin-monooxygenase [Brassica rapa subsp. pekinensis]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 153/252 (60%), Positives = 194/252 (76%), Gaps = 2/252 (0%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
           HVAVIGAGAAGLV   EL RE H+VVV+E+  +VGG W+YT ++E DPL +DPNR  VHS
Sbjct: 12  HVAVIGAGAAGLVAARELRRESHSVVVFERNTEVGGLWVYTPQSEPDPLSLDPNRTVVHS 71

Query: 64  SLYKSLRVNLPRELMGFQAYPFVAR-NYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           S+Y SLR NLPRE MG+  +PFV R  ++ S D RRYP H EVL YL++FAREF + ++V
Sbjct: 72  SVYDSLRTNLPRECMGYSDFPFVPRPEHDESRDPRRYPTHREVLAYLRDFAREFKLVEMV 131

Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
           R  TEV+     +  KWK++SR  D V  +E FD+VVVCNGH++ PR+AQ+PGID WPGK
Sbjct: 132 RFGTEVVRVEQ-DGRKWKIRSRNSDGVSRDEIFDSVVVCNGHYTEPRVAQIPGIDQWPGK 190

Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYD 242
           Q+HSHNYR+P+PF+DQVV++IG++ASG DI RDL G AKEVHIA+RS   ET+EK PG D
Sbjct: 191 QLHSHNYRVPDPFKDQVVVVIGNFASGSDISRDLTGVAKEVHIAARSKPSETYEKLPGAD 250

Query: 243 NMWLHSMVRTKK 254
           N+WLH M+ T +
Sbjct: 251 NLWLHPMIETAR 262

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840275|ref|XP_002888019.1| flavin-containing monooxygenase family protein [Arabidopsis lyrata subsp. lyrata] gi|297333860|gb|EFH64278.1| flavin-containing monooxygenase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 145/251 (57%), Positives = 196/251 (78%), Gaps = 2/251 (0%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           +HVAVIGAGAAGL+   ELLREGHTVVV+E+ ++VGG WIY+ +TESDPL +DPNR  VH
Sbjct: 11  QHVAVIGAGAAGLITARELLREGHTVVVFEREKEVGGLWIYSPKTESDPLSLDPNRSIVH 70

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SS+Y+SLR N+PRE MG + +PF+ R  + S D RRYP H EVL YLQ+FAREF ++ +V
Sbjct: 71  SSVYESLRTNVPRESMGVRDFPFLPRFDDISRDPRRYPRHREVLAYLQDFAREFEIEDMV 130

Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
           R  TEV+    V+  KW V+S+K  D   +E FDAVVVC+GH++ P +A +PGI+SWPGK
Sbjct: 131 RFKTEVVRVEPVD-GKWSVQSKKSGDCSNDEIFDAVVVCSGHYTEPNVAHIPGINSWPGK 189

Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GY 241
           Q+HSHNYR+P PF+++VV++IG++ASG DI RD+A  AKEVHIASR+   +T++K P  +
Sbjct: 190 QIHSHNYRVPGPFENEVVVVIGNFASGADISRDIAQVAKEVHIASRASESDTYKKLPVPH 249

Query: 242 DNMWLHSMVRT 252
           +N+W+HS + +
Sbjct: 250 NNLWIHSEIDS 260

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123136|ref|XP_002319003.1| predicted protein [Populus trichocarpa] gi|222857379|gb|EEE94926.1| predicted protein [Populus trichocarpa]

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 159/256 (62%), Positives = 195/256 (76%), Gaps = 10/256 (3%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
           HVAVIGAGAAGLV   EL REGH VVV+EK +QVGG W+Y    E DPLG+D  R  VHS
Sbjct: 12  HVAVIGAGAAGLVAARELHREGHKVVVFEKDDQVGGLWMYDPRVEPDPLGLDLTRPVVHS 71

Query: 64  SLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR 123
           SLY+SLR NLPRE MGF  YPFV R  EG  D RR+PGH EVL YLQ++AREFG++++VR
Sbjct: 72  SLYESLRTNLPRETMGFMDYPFVTREGEGR-DPRRFPGHREVLMYLQDYAREFGIEEMVR 130

Query: 124 LHTEVLNARLVESNKWKVKSRKK--------DDVVEEETFDAVVVCNGHFSVPRLAQVPG 175
              EV+N  +++S KWKVKS++K        DD  + E FDAVVVC GH++ PR+A++PG
Sbjct: 131 FGCEVVNVEMIDSGKWKVKSKRKRLDDNDRGDDFADHEDFDAVVVCVGHYTQPRIAEIPG 190

Query: 176 IDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS-VADET 234
           I+ WPGKQ+HSHNYRIP PF+DQ++ILIG  AS  DI  ++AG AKEVHIA RS V D+T
Sbjct: 191 INLWPGKQIHSHNYRIPEPFRDQIIILIGASASAADISVEIAGLAKEVHIARRSAVDDDT 250

Query: 235 HEKQPGYDNMWLHSMV 250
           +EK+PGYDN+WLHS +
Sbjct: 251 YEKKPGYDNIWLHSTI 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481971|ref|XP_003611271.1| Flavin-containing monooxygenase FMO GS-OX5 [Medicago truncatula] gi|355512606|gb|AES94229.1| Flavin-containing monooxygenase FMO GS-OX5 [Medicago truncatula]

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 157/248 (63%), Positives = 189/248 (76%), Gaps = 1/248 (0%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           RHVAVIGAGA GLV   EL REGH VVV+E+GE++GGSW+YTSE ESDPLG+DPNR  +H
Sbjct: 31  RHVAVIGAGAGGLVAARELRREGHQVVVFERGEELGGSWVYTSEVESDPLGLDPNRKLIH 90

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SSLY SLR NLPRE MGF+ YPF  R  E   D RR+P H EVL YL++FA +F +  +V
Sbjct: 91  SSLYNSLRTNLPRESMGFRDYPF-RRKEEKGRDSRRFPSHGEVLMYLKDFAADFEISDLV 149

Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
           RL TEV+ A + E  KW V+SR  +    +E +DAVVVCNGH+  PRL  +PGI++WPGK
Sbjct: 150 RLKTEVVFAGVGEGGKWTVRSRSVERECVDEIYDAVVVCNGHYFQPRLPNIPGINAWPGK 209

Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYD 242
           QMHSHNYR P PFQDQVV+LIG  AS +DI RD+A  AKEVHIA+RSV ++   K PG+D
Sbjct: 210 QMHSHNYRTPEPFQDQVVVLIGGAASAVDISRDVATVAKEVHIAARSVEEDKLGKLPGHD 269

Query: 243 NMWLHSMV 250
           NMWLHSM+
Sbjct: 270 NMWLHSMI 277

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116293735|gb|ABJ98059.1| FMO-like protein [Eutrema halophilum]

 Score =  306 bits (784), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 142/250 (56%), Positives = 196/250 (78%), Gaps = 2/250 (0%)

Query: 2   FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPV 61
           ++HVAVIGAGA+GLV   EL REGHT VV+++ +QVGG WIY+ + ESDPLG+DP R  V
Sbjct: 10  YQHVAVIGAGASGLVAARELRREGHTAVVFDREKQVGGLWIYSPKAESDPLGLDPTRSIV 69

Query: 62  HSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQV 121
           HSS+Y+SLR NLPRE MGF+ +PFV R  + + D RRYP H+EVL YL++FAREF ++++
Sbjct: 70  HSSVYESLRTNLPRECMGFRDFPFVPRGDDVARDPRRYPSHKEVLAYLEDFAREFNIEEM 129

Query: 122 VRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPG 181
           +R  TEV+    V + KW+V+S+      ++E FDAVVVC+GHF+ P +AQ+ GI+SWPG
Sbjct: 130 IRFETEVVRVEPV-NGKWRVRSKNSGGFSDDEIFDAVVVCSGHFTEPSVAQINGIESWPG 188

Query: 182 KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGY 241
           KQ+HSHNYR P+PF+D+VV++IG++ASG DI RD++  AKEVHIASR+   +T+EK  G+
Sbjct: 189 KQIHSHNYRRPDPFKDEVVVVIGNFASGADISRDISKVAKEVHIASRAGGPDTYEKLAGH 248

Query: 242 -DNMWLHSMV 250
            +N+W+HS +
Sbjct: 249 KNNLWMHSQI 258

Source: Eutrema halophilum

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844078|ref|XP_002889920.1| flavin-containing monooxygenase family protein [Arabidopsis lyrata subsp. lyrata] gi|297335762|gb|EFH66179.1| flavin-containing monooxygenase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  306 bits (783), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 155/257 (60%), Positives = 194/257 (75%), Gaps = 6/257 (2%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           RHVAVIGAGAAGLV   EL REGH+VVV E+G Q+GG W+YTSE E DPL +DP R  VH
Sbjct: 12  RHVAVIGAGAAGLVAARELRREGHSVVVLERGSQIGGVWVYTSEVEPDPLSLDPTRPVVH 71

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SSLYKSLR N+PRE MGF  +PF  R ++GS D RR+P H EVL YL++FA+EF ++++V
Sbjct: 72  SSLYKSLRTNIPRECMGFTDFPFATRPHDGSRDPRRHPAHTEVLAYLRDFAKEFDIEEMV 131

Query: 123 RLHTEVLNARLV-----ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
           R  TEV+ A  +     E  KWKV+SR  D +   E +DAVVVCNGH++ PR A + GID
Sbjct: 132 RFETEVVKAEQMAAEGEERGKWKVESRSSDGIA-NEIYDAVVVCNGHYTEPRHALITGID 190

Query: 178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
           SWPGKQ+HSHNYR+P+ F+DQVVI+IG  ASG+DI RD+A  AKEVH++SRS + ET+EK
Sbjct: 191 SWPGKQIHSHNYRVPDQFKDQVVIVIGSSASGVDICRDIAQVAKEVHVSSRSTSPETYEK 250

Query: 238 QPGYDNMWLHSMVRTKK 254
             GYDN+WLHS +   +
Sbjct: 251 LTGYDNLWLHSTIEIAR 267

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
TAIR|locus:2201991	465	FMO "AT1G12200" [Arabidopsis t	0.957	0.533	0.555	4.5e-75
TAIR|locus:2201971	459	FMO GS-OX5 "flavin-monooxygena	0.895	0.505	0.589	1.2e-74
TAIR|locus:2203911	464	NOGC1 "AT1G62580" [Arabidopsis	0.895	0.5	0.561	4.1e-72
TAIR|locus:2203921	452	AT1G62600 "AT1G62600" [Arabido	0.899	0.515	0.571	1.1e-71
TAIR|locus:2203901	461	FMO GS-OX4 "AT1G62570" [Arabid	0.961	0.540	0.529	1.8e-71
TAIR|locus:2203891	462	FMO GS-OX3 "AT1G62560" [Arabid	0.899	0.504	0.538	2.9e-71
TAIR|locus:2203866	450	AT1G62620 "AT1G62620" [Arabido	0.895	0.515	0.573	7.7e-71
TAIR|locus:2031336	450	AT1G63370 "AT1G63370" [Arabido	0.895	0.515	0.569	1.6e-70
TAIR|locus:2203871	457	FMO GS-OX2 "AT1G62540" [Arabid	0.895	0.507	0.568	5.5e-70
TAIR|locus:2009754	459	FMO GS-OX1 "AT1G65860" [Arabid	0.953	0.538	0.526	1.1e-69

TAIR|locus:2201991 FMO "AT1G12200" [Arabidopsis thaliana (taxid:3702)]

 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 141/254 (55%), Positives = 183/254 (72%)

Query:     3 RHXXXXXXXXXXXXXXHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
             RH               EL REGH+VVV E+G Q+GG W YTS+ E DPL +DP R  VH
Sbjct:    12 RHVAVIGAGAAGLVAARELRREGHSVVVLERGSQIGGVWAYTSQVEPDPLSLDPTRPVVH 71

Query:    63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
             SSLY+SLR N+PRE MGF  +PF  R ++GS D RR+P H EVL YL++FA+EF ++++V
Sbjct:    72 SSLYRSLRTNIPRECMGFTDFPFATRPHDGSRDPRRHPAHTEVLAYLRDFAKEFDIEEMV 131

Query:   123 RLHTEVLNARLV-----ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
             R  TEV+ A  V     E  KW+V+SR  D VV+E  +DAVVVCNGH++ PR A + GID
Sbjct:   132 RFETEVVKAEQVAAEGEERGKWRVESRSSDGVVDE-IYDAVVVCNGHYTEPRHALITGID 190

Query:   178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
             SWPGKQ+HSHNYR+P+ F+DQVVI+IG  ASG+DI RD+A  AKEVH++SRS + +T+EK
Sbjct:   191 SWPGKQIHSHNYRVPDQFKDQVVIVIGSSASGVDICRDIAQVAKEVHVSSRSTSPDTYEK 250

Query:   238 QPGYDNMWLHSMVR 251
               GY+N+WLHS ++
Sbjct:   251 LTGYENLWLHSTIQ 264

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:2201971 FMO GS-OX5 "flavin-monooxygenase glucosinolate S-oxygenase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 138/234 (58%), Positives = 179/234 (76%)

Query:    20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
             EL RE HTVVV+E+  +VGG W+YT  +E DPL +DPNR  VHSS+Y SLR NLPRE MG
Sbjct:    28 ELRRENHTVVVFERDSKVGGLWVYTPNSEPDPLSLDPNRTIVHSSVYDSLRTNLPRECMG 87

Query:    80 FQAYPFVARNYEG-SVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK 138
             ++ +PFV R  +  S D RRYP H EVL YL++FAREF + ++VR  TEV+     E  K
Sbjct:    88 YRDFPFVPRPEDDESRDSRRYPSHREVLAYLEDFAREFKLVEMVRFKTEVVLVE-PEDKK 146

Query:   139 WKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQ 198
             W+V+S+  D + ++E FDAVVVCNGH++ PR+A VPGIDSWPGKQ+HSHNYR+P+ F+DQ
Sbjct:   147 WRVQSKNSDGISKDEIFDAVVVCNGHYTEPRVAHVPGIDSWPGKQIHSHNYRVPDQFKDQ 206

Query:   199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVRT 252
             VV++IG++ASG DI RD+ G AKEVHIASRS   +T+ K PG +N+WLHSM+ +
Sbjct:   207 VVVVIGNFASGADISRDITGVAKEVHIASRSNPSKTYSKLPGSNNLWLHSMIES 260

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=IMP

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

TAIR|locus:2203911 NOGC1 "AT1G62580" [Arabidopsis thaliana (taxid:3702)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 132/235 (56%), Positives = 169/235 (71%)

Query:    20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
             EL REGH+VVV+E+G  +GG W YT   E DPL +DP R  +HSSLY SLR  +P+E MG
Sbjct:    29 ELRREGHSVVVFERGNHIGGVWAYTPNVEPDPLSIDPTRPVIHSSLYSSLRTIIPQECMG 88

Query:    80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-- 137
             F  +PF  R   GS D RR+PGH EVL YL++F REF +++++R  TEV+       N  
Sbjct:    89 FTDFPFSTRLENGSRDPRRHPGHSEVLAYLRDFVREFKIEEMIRFETEVVRVEQAGENPK 148

Query:   138 KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQD 197
             KW+VKSR   D+  +E +DAVVVCNGH++ PR A +PGID+WPGKQ+HSHNYR+P   +D
Sbjct:   149 KWRVKSRNFGDI-SDEIYDAVVVCNGHYTEPRHALIPGIDTWPGKQIHSHNYRVPEQVKD 207

Query:   198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVRT 252
             QVV++IG   SG+DI RD+A   KEVHI+SRS   ET+EK PGYDN+WLHS + T
Sbjct:   208 QVVVVIGSSVSGVDISRDIANVTKEVHISSRSTKPETYEKLPGYDNLWLHSNIET 262

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0031227 "intrinsic to endoplasmic reticulum membrane" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0019825 "oxygen binding" evidence=IDA

GO:0070026 "nitric oxide binding" evidence=IDA

TAIR|locus:2203921 AT1G62600 "AT1G62600" [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 136/238 (57%), Positives = 180/238 (75%)

Query:    20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
             EL REGH+VVV+E+ +QVGG+WIYT   E DPL VDP R  VHSS+Y SLR NLPRE MG
Sbjct:    28 ELRREGHSVVVFERQKQVGGTWIYTDHIEPDPLSVDPTRSVVHSSVYGSLRTNLPRECMG 87

Query:    80 FQAYPFVARN-YEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLN-ARLVE-- 135
             ++ +PFV R+    S D RR+P H EVL YLQ+FA+EF +++++R  T V+  A   E  
Sbjct:    88 YRDFPFVIRSDVSESRDPRRFPSHGEVLAYLQDFAKEFAIEEMIRFDTAVVKVAPAAEEG 147

Query:   136 SNKWKVKSRKKDD-VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP 194
             S KW+++S +K+  V+ +E +DAVVVCNGH+  PR A++PGI SWPGK+MHSHNYRIP P
Sbjct:   148 SGKWRIESTEKEKKVLRDEIYDAVVVCNGHYIEPRHAEIPGISSWPGKEMHSHNYRIPEP 207

Query:   195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVRT 252
             F+DQVV+LIG+ AS  DI RD+A  AKEVH+A RS A +T+ ++PGY N+W+HSM+ +
Sbjct:   208 FRDQVVVLIGNSASADDISRDIARVAKEVHVACRSNAADTYIERPGYSNLWMHSMIES 265

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2203901 FMO GS-OX4 "AT1G62570" [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 133/251 (52%), Positives = 179/251 (71%)

Query:     3 RHXXXXXXXXXXXXXXHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
             +H               EL REGHTVVV ++ +QVGG W+YT ETESD LG+DP R  VH
Sbjct:    11 QHVAVIGAGAAGLVAARELRREGHTVVVLDREKQVGGLWVYTPETESDELGLDPTRPIVH 70

Query:    63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
             SS+YKSLR NLPRE MG++ +PFV R  + S D RRYP H EVL YLQ+FA EF +++++
Sbjct:    71 SSVYKSLRTNLPRECMGYKDFPFVPRGDDPSRDSRRYPSHREVLAYLQDFATEFNIEEMI 130

Query:   123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
             R  TEVL    V + KW+V+S+       +E +DAVV+C GHF+ P +AQ+PGI+SWPG+
Sbjct:   131 RFETEVLRVEPV-NGKWRVQSKTGGGFSNDEIYDAVVMCCGHFAEPNIAQIPGIESWPGR 189

Query:   183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GY 241
             Q HSH+YR+P+PF+D+VV++IG++ASG DI RD++  AKEVHIASR+    T EK+P   
Sbjct:   190 QTHSHSYRVPDPFKDEVVVVIGNFASGADISRDISKVAKEVHIASRASKSNTFEKRPVPN 249

Query:   242 DNMWLHSMVRT 252
             +N+W+HS + T
Sbjct:   250 NNLWMHSEIDT 260

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=IMP

GO:0080103 "4-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IDA

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IDA

TAIR|locus:2203891 FMO GS-OX3 "AT1G62560" [Arabidopsis thaliana (taxid:3702)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 126/234 (53%), Positives = 179/234 (76%)

Query:    20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
             EL REGH+VVV+E+ +QVGG W+YT +++SDPL +DP R  VHSS+Y+SLR N+PRE MG
Sbjct:    28 ELRREGHSVVVFEREKQVGGLWVYTPKSDSDPLSLDPTRSKVHSSIYESLRTNVPRESMG 87

Query:    80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW 139
              + +PF+ R  + S D RRYP H EVL Y+Q+FAREF +++++R  TEV+    V++  W
Sbjct:    88 VRDFPFLPRFDDESRDARRYPNHREVLAYIQDFAREFKIEEMIRFETEVVRVEPVDNGNW 147

Query:   140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQV 199
             +V+S+     +E+E +DAVVVCNGH++ P +A +PGI SWPGKQ+HSHNYR+P+PF+++V
Sbjct:   148 RVQSKNSGGFLEDEIYDAVVVCNGHYTEPNIAHIPGIKSWPGKQIHSHNYRVPDPFENEV 207

Query:   200 VILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK-QPGYDNMWLHSMVRT 252
             V++IG++ASG DI RD+A  AKEVHIASR+    T+EK     +N+W+HS + T
Sbjct:   208 VVVIGNFASGADISRDIAKVAKEVHIASRAREPHTYEKISVPQNNLWMHSEIDT 261

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

GO:0080102 "3-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080103 "4-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0080104 "5-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080105 "6-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080106 "7-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2203866 AT1G62620 "AT1G62620" [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 136/237 (57%), Positives = 178/237 (75%)

Query:    20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
             EL REGH+VVV+EK +QVGG+WIYT E ESDPL VDP R  VHSS+Y+SLR+N  RE  G
Sbjct:    28 ELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVVHSSVYRSLRINGTRECTG 87

Query:    80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR-LVESN- 137
             ++ +PFV R+   S D RR+P H EVL YL++FA+EFG++++VR  TEV+      E   
Sbjct:    88 YRDFPFVVRSGV-SRDPRRFPSHGEVLAYLKDFAKEFGIEEMVRFETEVVKVSPAAEEGI 146

Query:   138 -KWKVKSRKKDDVVE-EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPF 195
              KW+++S +K+  V  +E +DAVVVCNGH+  PRLAQ+PGI SWPGK+MHSHNYRIP PF
Sbjct:   147 GKWRIESTEKEKKVRRDEIYDAVVVCNGHYVEPRLAQIPGISSWPGKEMHSHNYRIPEPF 206

Query:   196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVRT 252
             +D+VV+LIG+ +S  DI RD+A  AKEVH+A RS   +T  KQ GY+N+W HSM+ +
Sbjct:   207 RDKVVVLIGNSSSAEDISRDIARVAKEVHVACRSNPADTFIKQTGYNNLWTHSMIES 263

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2031336 AT1G63370 "AT1G63370" [Arabidopsis thaliana (taxid:3702)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 135/237 (56%), Positives = 177/237 (74%)

Query:    20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
             EL REGH+VVV+EK +QVGG+WIYT E ESDPL VDP R  VHSS+Y+SLR+N  RE  G
Sbjct:    28 ELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVVHSSVYRSLRINGTRECTG 87

Query:    80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR-LVESN- 137
             ++ +PFV R+   S D RR+P H EVL YL++FA+EFG++++VR  TEV+      E   
Sbjct:    88 YRDFPFVVRSGV-SRDRRRFPSHGEVLAYLKDFAKEFGIEEMVRFETEVVKVSPAAEEGI 146

Query:   138 -KWKVKSRKKDDVVE-EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPF 195
              KW+++S +K+  V  +E +DAVVVCNGH+  PRLAQ+PGI SWPGK+MHSHNYRIP PF
Sbjct:   147 GKWRIESTEKEKKVRRDEIYDAVVVCNGHYVEPRLAQIPGISSWPGKEMHSHNYRIPEPF 206

Query:   196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVRT 252
             +D+V +LIG+ +S  DI RD+A  AKEVH+A RS   +T  KQ GY+N+W HSM+ +
Sbjct:   207 RDKVAVLIGNSSSAEDISRDIARVAKEVHVACRSNPADTFIKQTGYNNLWTHSMIES 263

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2203871 FMO GS-OX2 "AT1G62540" [Arabidopsis thaliana (taxid:3702)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 133/234 (56%), Positives = 175/234 (74%)

Query:    20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
             EL REGHTVVV E+ ++VGG WIY+ + ESDPL +DP R  VHSS+Y+SLR NLPRE MG
Sbjct:    28 ELSREGHTVVVLEREKEVGGLWIYSPKAESDPLSLDPTRSIVHSSVYESLRTNLPRECMG 87

Query:    80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW 139
             F  +PFV R  + S D RRYP H EVL YLQ+FAREF ++++VR   EV+    V + KW
Sbjct:    88 FTDFPFVPRFDDESRDSRRYPSHMEVLAYLQDFAREFNLEEMVRFEIEVVRVEPV-NGKW 146

Query:   140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQV 199
             +V S+    V  +E FDAVVVC+GH++ P +A +PGI SWPGKQ+HSHNYR+P PF+++V
Sbjct:   147 RVWSKTSGGVSHDEIFDAVVVCSGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPGPFENEV 206

Query:   200 VILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GYDNMWLHSMVRT 252
             V++IG++ASG DI RD+A  AKEVHIASR+   +T+EK P   +N+W+HS + T
Sbjct:   207 VVVIGNFASGADISRDIAKVAKEVHIASRASEFDTYEKLPVPRNNLWIHSEIDT 260

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=IMP

GO:0080102 "3-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080103 "4-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0080104 "5-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080106 "7-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

TAIR|locus:2009754 FMO GS-OX1 "AT1G65860" [Arabidopsis thaliana (taxid:3702)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 131/249 (52%), Positives = 175/249 (70%)

Query:     3 RHXXXXXXXXXXXXXXHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
             +H               EL REGHTVVV+++ +QVGG W Y+S+ +SDPL +D  R  VH
Sbjct:    11 KHVAVIGAGAAGLVTARELRREGHTVVVFDREKQVGGLWNYSSKADSDPLSLDTTRTIVH 70

Query:    63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
             +S+Y+SLR NLPRE MGF  +PFV R ++ S D RRYP H EVL YLQ+FAREF ++++V
Sbjct:    71 TSIYESLRTNLPRECMGFTDFPFVPRIHDISRDSRRYPSHREVLAYLQDFAREFKIEEMV 130

Query:   123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
             R  TEV+    V + KW V+S+        E FDAVVVC+GHF+ P +A +PGI SWPGK
Sbjct:   131 RFETEVVCVEPV-NGKWSVRSKNSVGFAAHEIFDAVVVCSGHFTEPNVAHIPGIKSWPGK 189

Query:   183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GY 241
             Q+HSHNYR+P PF ++VV++IG+YASG DI RD+A  AKEVHIASR+   +T++K P   
Sbjct:   190 QIHSHNYRVPGPFNNEVVVVIGNYASGADISRDIAKVAKEVHIASRASESDTYQKLPVPQ 249

Query:   242 DNMWLHSMV 250
             +N+W+HS +
Sbjct:   250 NNLWVHSEI 258

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0033506 "glucosinolate biosynthetic process from homomethionine" evidence=IMP

GO:0080102 "3-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080103 "4-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0080104 "5-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080105 "6-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080106 "7-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
PLN02172	461	PLN02172, PLN02172, flavin-containing monooxygenas	1e-121
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	3e-34
pfam00743	532	pfam00743, FMO-like, Flavin-binding monooxygenase-	1e-33
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	3e-19
TIGR04046	400	TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido	5e-13
TIGR04018	316	TIGR04018, Bthiol_YpdA, putative bacillithiol syst	3e-12
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	1e-09
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	4e-09
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	2e-08
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	3e-08
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	6e-08
PRK12814	652	PRK12814, PRK12814, putative NADPH-dependent gluta	2e-07
TIGR00275	400	TIGR00275, TIGR00275, flavoprotein, HI0933 family	5e-07
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	8e-07
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	2e-06
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	2e-06
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	2e-06
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	3e-06
TIGR01317	485	TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH	4e-06
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	4e-06
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	4e-06
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	9e-06
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	1e-05
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	3e-05
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	3e-05
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	4e-05
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	4e-05
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	1e-04
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	1e-04
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	1e-04
TIGR02733	492	TIGR02733, desat_CrtD, C-3',4' desaturase CrtD	2e-04
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	2e-04
pfam03486	405	pfam03486, HI0933_like, HI0933-like protein	2e-04
pfam13454	153	pfam13454, NAD_binding_9, FAD-NAD(P)-binding	3e-04
PLN02487	569	PLN02487, PLN02487, zeta-carotene desaturase	3e-04
TIGR01318	467	TIGR01318, gltD_gamma_fam, glutamate synthase smal	3e-04
COG4529	474	COG4529, COG4529, Uncharacterized protein conserve	3e-04
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	4e-04
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	4e-04
TIGR02732	474	TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carot	6e-04
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	6e-04
PRK12769	654	PRK12769, PRK12769, putative oxidoreductase Fe-S b	6e-04
COG2081	408	COG2081, COG2081, Predicted flavoproteins [General	6e-04
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	7e-04
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	0.001
PRK12834	549	PRK12834, PRK12834, putative FAD-binding dehydroge	0.002
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	0.002
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	0.002
TIGR00562	462	TIGR00562, proto_IX_ox, protoporphyrinogen oxidase	0.004
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	0.004

>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX

 Score =  353 bits (907), Expect = e-121
 Identities = 147/251 (58%), Positives = 195/251 (77%), Gaps = 2/251 (0%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           +HVAVIGAGAAGLV   EL REGHTVVV+E+ +QVGG W+YT ++ESDPL +DP R  VH
Sbjct: 11  QHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVH 70

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SS+Y+SLR NLPRE MG++ +PFV R  + S D RRYP H EVL YLQ+FAREF ++++V
Sbjct: 71  SSVYESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMV 130

Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
           R  TEV+    V+  KW+V+S+      ++E FDAVVVCNGH++ P +A +PGI SWPGK
Sbjct: 131 RFETEVVRVEPVDG-KWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGK 189

Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GY 241
           Q+HSHNYR+P+PF+++VV++IG++ASG DI RD+A  AKEVHIASR+   +T+EK P   
Sbjct: 190 QIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVPQ 249

Query: 242 DNMWLHSMVRT 252
           +N+W+HS + T
Sbjct: 250 NNLWMHSEIDT 260

Length = 461

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score =  127 bits (322), Expect = 3e-34
 Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 32/227 (14%)

Query: 5   VAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
           VA+IGAG +GL   + L + G    V++EK + VGG+W Y             NRYP   
Sbjct: 11  VAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRY-------------NRYP--- 54

Query: 64  SLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR 123
                LR++ P+ L+GF   PF             +    E+  Y++++  ++G+   +R
Sbjct: 55  ----GLRLDSPKWLLGFPFLPFRWD--------EAFAPFAEIKDYIKDYLEKYGLRFQIR 102

Query: 124 LHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
            +T V  A   E  K W V +   D    E T D VVV  GH S P +    G+D + G+
Sbjct: 103 FNTRVEVADWDEDTKRWTVTT--SDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGR 160

Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
            +HS ++  P   + + V++IG  AS +DI  +LA     V ++ RS
Sbjct: 161 ILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRS 207

Length = 443

>gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like

 Score =  126 bits (319), Expect = 1e-33
 Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 25/233 (10%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           + VAVIGAG +GL      L EG     +E+ + +GG W +T   E              
Sbjct: 2   KKVAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGGLWRFTEHVEEG-----------R 50

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           +S+YKS+  N  +E+  F  +PF         D   +  + + L YL+ FA+ F + + +
Sbjct: 51  ASIYKSVVTNSSKEMSCFSDFPF-------PEDYPNFMHNSKFLEYLRMFAKHFDLLKYI 103

Query: 123 RLHTEVLNAR----LVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA--QVPGI 176
           +  T V +         S +W+V + + +   E   FDAV+VC GH + P L     PGI
Sbjct: 104 QFKTTVCSVTKRPDFSTSGQWEVVT-EHEGKQESAVFDAVMVCTGHHTNPHLPLESFPGI 162

Query: 177 DSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
           + + G+  HS +Y+ P  FQ + V++IG   SG DI  +L+  A +V +++R+
Sbjct: 163 NKFKGQYFHSRDYKHPEGFQGKRVLVIGLGNSGGDIAVELSRTAAQVFLSTRT 215

This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 82.7 bits (205), Expect = 3e-19
 Identities = 51/230 (22%), Positives = 85/230 (36%), Gaps = 38/230 (16%)

Query: 6   AVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
            V+GAGAAG+     LL  G   V++ ++G Q GG W                ++     
Sbjct: 1   LVVGAGAAGMAFADHLLDLGDAPVIIVDRGAQPGGHW---------------RKWYPFVR 45

Query: 65  LYKSLRVN-----LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD 119
           L++               +     P      E            E+  YL++ AR +G+ 
Sbjct: 46  LHQPSFFYGDFGMPDLNALSIDTSPKWDGKAE-------LASGAEIAAYLEDLARRYGL- 97

Query: 120 QVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSW 179
             +RL T V         ++ V+    + V      D VV   G FSVP+    PG D+ 
Sbjct: 98  -PIRLSTRVTAVERDG-GRFVVRLTDGETV----RADYVVDATGAFSVPKPPGFPGADA- 150

Query: 180 PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
             + +H  +       + + V +IG   + +D   +L    K+V   +R 
Sbjct: 151 --EGVHLVDVLERIDLKGKTVAVIGGGHTAIDAALNLLDLGKDVTWITRR 198

Length = 202

>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 68/228 (29%), Positives = 97/228 (42%), Gaps = 46/228 (20%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN---RYPV 61
           V +IGAG AGL V + L + G   VV EK   V  SW      +S  L V PN   R P 
Sbjct: 3   VVIIGAGQAGLSVSYYLKQAGIDHVVLEK-HTVAHSW-RDERWDSFCL-VTPNWQCRLPG 59

Query: 62  HSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQV 121
           H                           Y+G+ D   +   +E++ YL  +AR F     
Sbjct: 60  HP--------------------------YDGT-DPDGFMVKDEIVAYLDGYARSFNPP-- 90

Query: 122 VRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGI-DSWP 180
           VR  TEV + R   +  ++V +          T D VV+  G + VP    +P + +  P
Sbjct: 91  VREGTEVTSLRKHGAGGFRVSTS-----AGAFTADQVVIATGGYHVPV---IPPLAERLP 142

Query: 181 G--KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIA 226
               Q+HS  YR P+   D  V+++G   SG  I  DL    ++VH+A
Sbjct: 143 ADVLQLHSSEYRNPDQLPDGAVLVVGSGQSGCQIAEDLHLAGRKVHLA 190

Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400

>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family

 Score = 64.9 bits (159), Expect = 3e-12
 Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 48/203 (23%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
           V +IGAG  GL    E  + G + ++ EKG  V  + IY              RYP + +
Sbjct: 2   VIIIGAGPCGLACAIEAQKAGLSYLIIEKGNLV--NSIY--------------RYPTNMT 45

Query: 65  LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
            + +       E +     PF++ N +        P   E L Y +  A  F ++  +RL
Sbjct: 46  FFST------SERLEIGGIPFISENPK--------PTRNEALEYYRRVAERFKLN--IRL 89

Query: 125 HTEVLNARLVESNKWKVKSRKKDDVVEEETFDA--VVVCNGHFSVPRLAQVPGIDSWPGK 182
           + EVL  +  +   ++V + K        T+ A  V+V  G++ +P L  VPG D  P  
Sbjct: 90  YEEVLKVKKTDGG-FEVTTEK-------GTYQAKNVIVATGYYDIPNLLNVPGEDL-P-- 138

Query: 183 QMH-SHNYRIPNPFQDQVVILIG 204
               SH Y+  +P+  Q V+++G
Sbjct: 139 --KVSHYYKEAHPYFGQKVVVVG 159

Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           +A++G G AGL   + L + GH V V+E  +Q+GG
Sbjct: 1  KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36

Length = 434

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 56.3 bits (137), Expect = 4e-09
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           VAV+G+G AGL    +L R GH V V+E+ +++GG
Sbjct: 146 VAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180

Length = 471

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 7  VIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE 48
          ++GAG +GLV  + L + G  V+V EK +++GG   Y+    
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRIGG-NAYSERDP 41

Length = 66

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 53.6 bits (130), Expect = 3e-08
 Identities = 18/37 (48%), Positives = 25/37 (67%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           + VAVIGAG AGL   H L R+G+ V ++E  ++ GG
Sbjct: 141 KKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177

Length = 457

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 52.6 bits (127), Expect = 6e-08
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
          + V +IGAG AGL   +ELL+ G+ V V E    VGG
Sbjct: 5  KSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41

Length = 479

>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 19/37 (51%), Positives = 26/37 (70%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           + VA+IGAG AGL   + LLR+GH V +++  EQ GG
Sbjct: 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230

Length = 652

>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family

 Score = 49.5 bits (119), Expect = 5e-07
 Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 35/182 (19%)

Query: 6   AVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG--------GSWIYTSETESDPLGVDPN 57
            +IG GAAGL+      REG +V++ EK +++G        G    T+   +        
Sbjct: 1   IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEF---VA 57

Query: 58  RYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDL------RRYP---GHEEVLRY 108
            YP +    +S        L  F     +       ++L      R +P      +VL  
Sbjct: 58  YYPRNGKFLRSA-------LSRFSNKDLIDFFESLGLELKVEEDGRVFPCSDSAADVLDA 110

Query: 109 LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168
           L N  +E GV+  +  +++V + +  +   + V++        E   D V++  G  S P
Sbjct: 111 LLNELKELGVE--ILTNSKVKSIKKDD-GGFGVETSGG-----EYEADKVIIATGGLSYP 162

Query: 169 RL 170
           +L
Sbjct: 163 QL 164

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae [Unknown function, Enzymes of unknown specificity]. Length = 400

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 20/35 (57%), Positives = 23/35 (65%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           VAVIGAG AGL   + L R GH V V+E+ E  GG
Sbjct: 542 VAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGG 576

Length = 1019

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 15/38 (39%), Positives = 18/38 (47%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
            V +IG G  GL   + L   G  V V E GE  GG+
Sbjct: 5  MDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGA 42

Length = 387

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           + VAVIG G AGL   + L R GH V ++E G ++GG
Sbjct: 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174

Length = 564

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 22/35 (62%), Positives = 25/35 (71%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           VAVIGAG AGL  G+ L R GH V V+EK E+ GG
Sbjct: 540 VAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGG 574

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP 60
            +A+IG G AGL   + L + G    V ++E  ++VGG  + T + +         R P
Sbjct: 1  MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG-LLRTVKIDGFLF----ERGP 55

Query: 61 VHSSLYKSLRVNLPREL 77
           H    K   ++L +EL
Sbjct: 56 HHFLARKEEILDLIKEL 72

Length = 444

>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43
           VAV+G+G AGL    +L R GHTV V+E+ ++ GG  +Y
Sbjct: 146 VAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY 184

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 45/208 (21%), Positives = 62/208 (29%), Gaps = 61/208 (29%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS-------WIYTSETESDP----- 51
            V VIG G  GL   +EL R G +V + E+G+   G+              E  P     
Sbjct: 1   DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLASGASGRNAGLLHPGLRKERAPLLARL 60

Query: 52  ----------------------------LGVDPNRYPVHSSLYKSLRVN-LPRELMG--- 79
                                       L  D         L  +LR   LP EL+    
Sbjct: 61  ALESRDLWRELIEELGIDCDFRRTGVLVLARDEAELDALRRLAAALRALGLPVELLDAEE 120

Query: 80  -FQAYPFVARNYEGSVDLRRYPG-----HEEVLRYLQNFAREFGVDQVVRLHTEVLNARL 133
             +  P ++    G +    YP         +LR L   A   GV+  +   TEV     
Sbjct: 121 LRELEPGLSPGIRGGL---FYPDGGHVDPARLLRALARAAEALGVE--ILEGTEVTGLE- 174

Query: 134 VESNKWKVKSRKKDDVVEEETFDAVVVC 161
            E     V++        E   D VV  
Sbjct: 175 REGGGVTVETED-----GEIRADKVVNA 197

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           VAVIGAG AGL    +L R GH V V+E+    GG
Sbjct: 126 VAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160

Length = 457

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 20/39 (51%), Positives = 24/39 (61%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43
           VAVIGAG AGL    EL + GH+V V+E   + GG   Y
Sbjct: 136 VAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTY 174

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 18/40 (45%), Positives = 20/40 (50%)

Query: 1  MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
              V VIGAG  GL     L R G  V V EK ++VGG 
Sbjct: 2  PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGR 41

Length = 487

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 17/36 (47%), Positives = 19/36 (52%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           V VIG+G AGL    E    G  V V EKG+  GG
Sbjct: 1  DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGG 36

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 2   FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38
            R  A+IG G AG  +   L R G  V +YE  E   
Sbjct: 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPA 296

Length = 662

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 29/110 (26%), Positives = 38/110 (34%), Gaps = 5/110 (4%)

Query: 13  AGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS----SLYKS 68
           AGL    ELLR G  V V E  ++VGG  I T   +   + +    +        +L   
Sbjct: 2   AGLAAARELLRAGFDVTVLEARDRVGG-RIRTVRFDGFLIELGAQWFHGAYPNLLNLLLE 60

Query: 69  LRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGV 118
           L + L   L  F   PFV   Y G             L  L     E  +
Sbjct: 61  LGLELGLLLFPFPGDPFVRLKYRGGPYPDLPGDLPPPLFLLLRSLLELEL 110

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWI 42
           VA+ GAG AGL   +EL   G+ V +YE  +++GG   SW 
Sbjct: 2  RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWR 43

Length = 485

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
           + V V+GAG  GL       + G  V + E  +++GG 
Sbjct: 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ 174

Length = 415

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
          +A++GAG AGL   + L   G  V V+EKG  VGG
Sbjct: 4  IAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGG 38

Length = 331

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 45/226 (19%), Positives = 77/226 (34%), Gaps = 52/226 (23%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
            V +IG G AGL     L R G  V + E+                       NR  +  
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCY-----------------NRGCLPK 43

Query: 64  SLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR 123
            L               +    +                   L   +   +EFGV+  V 
Sbjct: 44  KL-------------LLEVAEGLEL--------------AIGLALPEEVYKEFGVE--VL 74

Query: 124 LHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQ 183
           L TEV++         K    K  +   E T+D +++  G  + PR+  +PG++    + 
Sbjct: 75  LGTEVVDI----DRGEKTVVLKDVETGREITYDKLIIATG--ARPRIPGIPGVEVATLRG 128

Query: 184 MHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
           +   +  +      + V+++G    GL++   LA   KEV +  R 
Sbjct: 129 VIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERR 174

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           V VIGAG AGL     L + G+ V + E+  Q GG
Sbjct: 3  SVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG 38

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 492

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 35/169 (20%), Positives = 55/169 (32%), Gaps = 35/169 (20%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-----GSWIYTSETES-----DPLGV 54
           V ++GAG AG      L + G  V+V EKG + G     G  +     E      D    
Sbjct: 6   VVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIE 65

Query: 55  DPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR 114
                       + + + +P                EG +  R      +  ++L   A 
Sbjct: 66  RKVTGARIYFPGEKVAIEVPVG--------------EGYIVDRA-----KFDKWLAERAE 106

Query: 115 EFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG 163
           E G +  +   T V    + E +   V  R  DD V       V+  +G
Sbjct: 107 EAGAE--LYPGTRV-TGVIREDDGVVVGVRAGDDEV---RAKVVIDADG 149

Length = 396

>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 46/189 (24%), Positives = 69/189 (36%), Gaps = 41/189 (21%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSE------TESDPLGVDP 56
             V VIG GAAGL+      + G  V++ +KG+++ G  I  S       T S       
Sbjct: 1   YDVIVIGGGAAGLMAAISAAKRGRRVLLIDKGKKL-GRKILISGGGRCNVTNSVEP---D 56

Query: 57  N---RYPVHSS-LYKSLRVNLPRELMGFQAYPFVARN----YEGSVDLRRYP---GHEEV 105
               RYP +   L  +L    P + +      F         E     R +P      ++
Sbjct: 57  EFLSRYPGNPHFLKSALSRFTPWDFIA-----FFEELGVPLKEED-HGRLFPVSDKASDI 110

Query: 106 LRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKS----RKKDDVVEEETFDAVVVC 161
           +  L N  +E GV   +R  T VL          +       R   D  EE   D++V+ 
Sbjct: 111 VDALLNELKELGV--KIRTRTRVL--------SVEKDDDGRFRVDTDGGEELEADSLVLA 160

Query: 162 NGHFSVPRL 170
            G  S P+ 
Sbjct: 161 TGGLSWPKT 169

Length = 405

>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 36/174 (20%), Positives = 55/174 (31%), Gaps = 35/174 (20%)

Query: 6   AVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWIYTSE--------TESDPLG 53
           A+IGAG  GL V   LLR        + V++     G   ++ ++        T +  + 
Sbjct: 1   AIIGAGPRGLSVLERLLRRAPDRPLDITVFDPSP-PGAGGVWRTDQPPQLLLNTPAAQMS 59

Query: 54  VDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGH--EEVLRYLQN 111
           + P+  P   S  + L      E  G     F  R          + G         L  
Sbjct: 60  LFPDDPP---SFLEWLEAQ-GEEEAGLDPDDFPPR--------ALF-GEYLRWRFSELLA 106

Query: 112 FAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHF 165
            A       V     EV++ R      + V       +      DAVV+  GH 
Sbjct: 107 RAPAGV--TVRVHRAEVVDLR-PRGGGYTVTLADGATL----RADAVVLATGHG 153

Length = 153

>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           VA+IGAG AG+    ELL +GH V +YE    +GG
Sbjct: 78  VAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGG 112

Length = 569

>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           VAVIGAG AGL     L R G  VVV+++  ++GG
Sbjct: 144 VAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG 178

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467

>gnl|CDD|226906 COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 47/248 (18%), Positives = 79/248 (31%), Gaps = 37/248 (14%)

Query: 1   MFRHVAVIGAGAAGLVVGHELLR----EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDP 56
           MF+ VA+IG G +G+ +   LL+     G  + ++E     G    Y++E     L V  
Sbjct: 1   MFK-VAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQGIAYSTEEPEHLLNVPA 58

Query: 57  NRYPVHSS---------LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLR 107
            R    +          L K L+     E +      +  R          Y     +  
Sbjct: 59  ARMSAFAPDIPQDFVRWLQKQLQRYRDPEDINHDGQAYPPRR-----LFGEY-----LRE 108

Query: 108 YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167
            L          +V  +  E  + R  ++N         D     E  D +V+  GH   
Sbjct: 109 QLAALLARGRQTRVRTIREEATSVRQ-DTNAGGYLVTTAD--GPSEIADIIVLATGH--S 163

Query: 168 PRLAQVPGIDSWPGKQMHSHNYRIPNPF----QDQVVILIGHYASGLDIKRDL--AGFAK 221
              A     D     ++ +  Y   N       D  V+++G   + +D    L   G   
Sbjct: 164 APPADPAARDLKGSPRLIADPYP-ANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKG 222

Query: 222 EVHIASRS 229
            +   SR 
Sbjct: 223 PITAISRR 230

Length = 474

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 3  RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYT 44
          + VA+IG G  GL   + L ++G    + + E  +++GG  I T
Sbjct: 1  KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGK-IQT 43

Length = 451

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
          VA++GAG +GL   + L + G  V V+E+    GG
Sbjct: 28 VAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG 62

Length = 257

>gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWI 42
          VA++GAG AGL    EL+  GH V +YE    +G   GSW+
Sbjct: 2  VAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWV 42

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. Length = 474

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEK 33
            VA++GAG AGL +   L R G  V + E+
Sbjct: 3  LDVAIVGAGPAGLALALALARAGLDVTLLER 33

Length = 387

>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           + VA+IGAG AGL     L R G  V VY++  ++GG
Sbjct: 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGG 364

Length = 654

>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only]

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 1  MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38
              V +IG G AGL+      + G  V++ +KG ++G
Sbjct: 2  ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLG 39

Length = 408

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
          V ++GAG AGL   +EL + G+ V + E  ++VGG
Sbjct: 10 VIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44

Length = 450

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35
          V VIGAG AG V      + G  V + EKG 
Sbjct: 6  VIVIGAGPAGYVAARRAAKLGKKVALIEKGP 36

Length = 460

>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEK-GEQ-VGG 39
          V V+GAG AGLV   EL   G  V++ ++  E  +GG
Sbjct: 7  VIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43

Length = 549

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
            VIGAG  GL +   L   G  V V E+ ++ GG
Sbjct: 1  AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGG 35

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43
           VAVIG+G AGL    +L + G+ V V+E   ++GG   Y
Sbjct: 434 VAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY 472

Length = 752

>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 3  RHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWIYTSE 46
          +HV +IG G +GL   + L +E       + + E  ++VGG  I T +
Sbjct: 3  KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG-KIQTVK 49

This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 462

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43
           VAVIG+G AGL    +L + G+ V ++E   + GG  +Y
Sbjct: 143 VAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVY 181

Length = 464

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	100.0
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	100.0
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	100.0
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	100.0
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	100.0
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.96
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.95
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.94
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.94
PRK10262	321	thioredoxin reductase; Provisional	99.94
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.94
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.93
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.93
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.92
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.92
PRK06370	463	mercuric reductase; Validated	99.91
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.91
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.91
PLN02507	499	glutathione reductase	99.91
PRK06116	450	glutathione reductase; Validated	99.91
PTZ00058	561	glutathione reductase; Provisional	99.91
TIGR02053	463	MerA mercuric reductase. This model represents the	99.91
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.91
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.91
PRK14694	468	putative mercuric reductase; Provisional	99.91
PRK14727	479	putative mercuric reductase; Provisional	99.91
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.91
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.9
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.9
PRK13748	561	putative mercuric reductase; Provisional	99.9
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.9
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.9
PLN02546	558	glutathione reductase	99.9
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.89
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.89
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.89
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.89
PTZ00052	499	thioredoxin reductase; Provisional	99.89
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.88
PRK07846	451	mycothione reductase; Reviewed	99.88
PRK12831	464	putative oxidoreductase; Provisional	99.88
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.88
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.88
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.87
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.87
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.87
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	99.87
PRK09897	534	hypothetical protein; Provisional	99.87
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.86
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.85
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.84
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.84
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.84
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.83
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.83
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	99.83
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.83
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.83
COG2081	408	Predicted flavoproteins [General function predicti	99.83
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.82
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.81
PLN02852	491	ferredoxin-NADP+ reductase	99.81
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.81
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.81
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.81
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.8
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.8
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.79
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.79
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.78
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.78
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.78
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.77
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.77
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.77
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.75
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.74
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.72
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.71
PRK13984	604	putative oxidoreductase; Provisional	99.71
PTZ00188	506	adrenodoxin reductase; Provisional	99.7
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.7
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.69
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	99.65
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	99.65
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.65
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.62
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.6
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.6
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.59
PRK06847	375	hypothetical protein; Provisional	99.58
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	99.57
PRK10157	428	putative oxidoreductase FixC; Provisional	99.56
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.54
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.53
PRK08244	493	hypothetical protein; Provisional	99.53
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.53
PRK10015	429	oxidoreductase; Provisional	99.52
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.52
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.51
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.51
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.5
PRK06185	407	hypothetical protein; Provisional	99.49
PRK06834	488	hypothetical protein; Provisional	99.49
PRK08163	396	salicylate hydroxylase; Provisional	99.49
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.49
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.49
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.49
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.49
PRK06184	502	hypothetical protein; Provisional	99.48
PRK11445	351	putative oxidoreductase; Provisional	99.48
PRK09126	392	hypothetical protein; Provisional	99.48
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.48
PRK08013	400	oxidoreductase; Provisional	99.48
PRK07588	391	hypothetical protein; Provisional	99.48
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.48
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.48
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.48
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.47
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.47
PRK07045	388	putative monooxygenase; Reviewed	99.47
PRK07190	487	hypothetical protein; Provisional	99.47
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.47
PLN02463	447	lycopene beta cyclase	99.46
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.46
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.46
PRK06475	400	salicylate hydroxylase; Provisional	99.46
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.45
PRK07236	386	hypothetical protein; Provisional	99.44
PRK08274	466	tricarballylate dehydrogenase; Validated	99.44
PRK06126	545	hypothetical protein; Provisional	99.44
PRK07538	413	hypothetical protein; Provisional	99.43
PRK06753	373	hypothetical protein; Provisional	99.42
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.42
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.42
PRK05868	372	hypothetical protein; Validated	99.42
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.42
PLN02697	529	lycopene epsilon cyclase	99.42
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.41
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.41
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.41
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.41
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.4
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.39
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.39
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.39
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.38
PLN02661	357	Putative thiazole synthesis	99.37
COG0579	429	Predicted dehydrogenase [General function predicti	99.37
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.37
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.37
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.37
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.37
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.36
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.35
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.34
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.33
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.33
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.33
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.32
PRK07121	492	hypothetical protein; Validated	99.31
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.3
PRK08294	634	phenol 2-monooxygenase; Provisional	99.3
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.29
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.29
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.29
PRK06996	398	hypothetical protein; Provisional	99.29
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.29
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.28
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.28
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.28
PRK07804	541	L-aspartate oxidase; Provisional	99.27
PLN02985	514	squalene monooxygenase	99.27
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.27
PRK06175	433	L-aspartate oxidase; Provisional	99.26
PRK08401	466	L-aspartate oxidase; Provisional	99.26
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.26
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.26
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.25
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.25
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.24
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.24
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.24
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.23
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.23
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.22
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	99.22
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.21
PRK08275	554	putative oxidoreductase; Provisional	99.2
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.2
PRK08071	510	L-aspartate oxidase; Provisional	99.2
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.2
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.2
PLN02815	594	L-aspartate oxidase	99.19
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.19
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.18
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	99.18
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.17
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.17
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.17
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.15
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.15
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.15
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.15
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.15
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.15
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.15
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.14
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.14
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.14
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.14
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.13
PRK12839	572	hypothetical protein; Provisional	99.13
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.13
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.13
KOG2755	334	consensus Oxidoreductase [General function predict	99.12
PRK07395	553	L-aspartate oxidase; Provisional	99.12
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.12
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.12
PRK09077	536	L-aspartate oxidase; Provisional	99.12
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.12
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.11
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	99.11
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.11
PRK05257	494	malate:quinone oxidoreductase; Validated	99.1
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.1
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.1
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.1
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.09
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.09
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	99.08
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.08
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.07
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.06
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.05
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.05
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.04
PRK07512	513	L-aspartate oxidase; Provisional	99.04
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.03
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.03
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.03
PRK06116	450	glutathione reductase; Validated	99.03
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.03
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.01
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.01
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	99.0
TIGR02053	463	MerA mercuric reductase. This model represents the	98.99
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.99
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.99
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.98
PTZ00367	567	squalene epoxidase; Provisional	98.98
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.98
PRK06370	463	mercuric reductase; Validated	98.97
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.97
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.97
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.97
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.96
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.95
PLN02507	499	glutathione reductase	98.95
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.94
PRK07846	451	mycothione reductase; Reviewed	98.93
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.93
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.92
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.92
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.91
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.91
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.89
PTZ00058	561	glutathione reductase; Provisional	98.88
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.88
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.88
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.86
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.86
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.86
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.86
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.85
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.85
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.84
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	98.83
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.83
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.8
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.8
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.8
PRK14694	468	putative mercuric reductase; Provisional	98.78
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.77
PRK14727	479	putative mercuric reductase; Provisional	98.77
PTZ00052	499	thioredoxin reductase; Provisional	98.77
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.77
PRK07208	479	hypothetical protein; Provisional	98.76
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.75
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.75
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.75
PRK13748	561	putative mercuric reductase; Provisional	98.74
PLN02546	558	glutathione reductase	98.74
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.73
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.73
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.72
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.72
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.72
PLN02268	435	probable polyamine oxidase	98.71
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.7
PRK07233	434	hypothetical protein; Provisional	98.68
PLN02576	496	protoporphyrinogen oxidase	98.67
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.67
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.66
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.66
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.64
COG3349	485	Uncharacterized conserved protein [Function unknow	98.64
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.63
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.62
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.6
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.59
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.59
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.59
PLN02568	539	polyamine oxidase	98.58
KOG2852	380	consensus Possible oxidoreductase [General functio	98.56
PRK10262	321	thioredoxin reductase; Provisional	98.55
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.51
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.51
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.5
PLN02676	487	polyamine oxidase	98.47
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.46
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	98.44
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.43
PLN02529	738	lysine-specific histone demethylase 1	98.41
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.39
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	98.38
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.36
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	98.36
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.36
PLN02487	569	zeta-carotene desaturase	98.36
COG3573	552	Predicted oxidoreductase [General function predict	98.34
KOG2853	509	consensus Possible oxidoreductase [General functio	98.32
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.32
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.29
PLN02612	567	phytoene desaturase	98.28
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.27
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	98.26
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.25
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	98.24
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.21
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	98.21
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.21
PLN03000	881	amine oxidase	98.18
PLN02976	1713	amine oxidase	98.16
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	98.12
PRK12831	464	putative oxidoreductase; Provisional	98.11
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.11
KOG2960	328	consensus Protein involved in thiamine biosynthesi	98.09
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.09
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.08
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	98.05
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	98.01
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.01
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.98
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.94
PRK02106	560	choline dehydrogenase; Validated	97.94
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.93
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.92
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.89
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	97.89
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.83
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.79
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.77
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	97.77
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.77
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.73
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.71
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	97.69
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.68
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.65
PLN02785	587	Protein HOTHEAD	97.6
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	97.6
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.57
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.49
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.44
PRK13984	604	putative oxidoreductase; Provisional	97.44
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.42
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.35
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.32
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.3
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.29
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.25
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.2
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	97.19
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.08
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.07
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.03
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	97.02
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.99
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	96.99
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	96.95
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.93
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.91
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.9
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.88
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	96.87
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.83
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.77
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.72
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.72
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.7
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.69
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.67
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.59
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.58
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.57
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.55
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.49
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.49
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	96.43
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.43
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.43
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.42
PTZ00188	506	adrenodoxin reductase; Provisional	96.39
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.39
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.39
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.39
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	96.36
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.35
PRK04148	134	hypothetical protein; Provisional	96.35
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	96.27
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	96.26
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.26
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.25
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.24
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.17
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.15
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.14
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.1
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.1
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.09
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	96.09
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.07
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.03
PRK06223	307	malate dehydrogenase; Reviewed	96.03
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.02
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	96.02
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.02
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.0
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.98
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.95
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	95.93
PLN02852	491	ferredoxin-NADP+ reductase	95.93
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.91
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.87
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.83
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	95.83
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.82
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	95.78
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.78
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.77
PRK07236	386	hypothetical protein; Provisional	95.77
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.76
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	95.72
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.7
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	95.69
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.69
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.69
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.66
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	95.65
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	95.65
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.65
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	95.64
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	95.63
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	95.63
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	95.62
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	95.6
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.59
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.57
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.56
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.53
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	95.5
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.5
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.49
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.43
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	95.42
PRK08163	396	salicylate hydroxylase; Provisional	95.39
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.37
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	95.37
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	95.34
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	95.34
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.33
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.31
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.31
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.31
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	95.31
PRK06567	1028	putative bifunctional glutamate synthase subunit b	95.27
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.26
PRK06847	375	hypothetical protein; Provisional	95.26
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.24
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.24
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	95.23
PRK08017	256	oxidoreductase; Provisional	95.22
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.22
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	95.2
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	95.19
PRK05868	372	hypothetical protein; Validated	95.18
PRK07417	279	arogenate dehydrogenase; Reviewed	95.17
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	95.17
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.15

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=100.00  E-value=1.3e-40  Score=274.16  Aligned_cols=252  Identities=58%  Similarity=1.024  Sum_probs=210.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+|||||++||++|.+|.+.|++++|||+++.+||.|.+.+....++.+..+......+..|..+..+.+...+.|.
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~   89 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR   89 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence            47999999999999999999999999999999999999999876555444455444445567789999999999999999


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      ++|+.........+...||++.++.+||+++++++++...++++++|+++++.+ +.|.|.+.++.+......||+||+|
T Consensus        90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~w~V~~~~~~~~~~~~~~d~VIvA  168 (461)
T PLN02172         90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GKWRVQSKNSGGFSKDEIFDAVVVC  168 (461)
T ss_pred             CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-CeEEEEEEcCCCceEEEEcCEEEEe
Confidence            999865422122345789999999999999999999998899999999999875 7899998864433345789999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCcccccCC-CC
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQ-PG  240 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~-~~  240 (259)
                      ||+++.|++|.++|.+.|.|..+|+..|..+..+.+++|+|||+|.||+|+|.+|.+.+++|++++|++.....+++ ..
T Consensus       169 tG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~~~~~~~~  248 (461)
T PLN02172        169 NGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVP  248 (461)
T ss_pred             ccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccccccCcCC
Confidence            99999999999999999999999999999998899999999999999999999999999999999998744333333 23


Q ss_pred             CCCceEeeeeeEEe
Q 024975          241 YDNMWLHSMVRTKK  254 (259)
Q Consensus       241 ~~~~~~~~~v~~~~  254 (259)
                      ..+++.++.|..+.
T Consensus       249 ~~~v~~~~~I~~~~  262 (461)
T PLN02172        249 QNNLWMHSEIDTAH  262 (461)
T ss_pred             CCceEECCccccee
Confidence            34666666676554

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=100.00  E-value=1.2e-37  Score=259.74  Aligned_cols=209  Identities=41%  Similarity=0.777  Sum_probs=172.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      ++|+|||||++||++|..|.+.|+++++||+++.+||.|.+.....           .-.+..|+.+..+.+...+.|++
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~-----------~g~~~~y~sl~~n~sk~~~~fsd   70 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPE-----------DGRSSVYDSLHTNTSKEMMAFSD   70 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCC-----------CSEGGGSTT-B-SS-GGGSCCTT
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCC-----------CCccccccceEEeeCchHhcCCC
Confidence            6899999999999999999999999999999999999998753110           01345799999999999999999


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC----CcEEEEEEecCCceEEEEeCEE
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES----NKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~----~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                      +|+..       +.+.||++.++.+||+.+++++++..+++++++|+++++.++    +.|.|++++ ++......||+|
T Consensus        71 fp~p~-------~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~-~g~~~~~~fD~V  142 (531)
T PF00743_consen   71 FPFPE-------DYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN-DGKEETEEFDAV  142 (531)
T ss_dssp             S-HCC-------CCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-TTEEEEEEECEE
T ss_pred             cCCCC-------CCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec-CCeEEEEEeCeE
Confidence            99854       356799999999999999999999999999999999998653    469998764 344556789999


Q ss_pred             EEccCCCCCCccCC--CCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          159 VVCNGHFSVPRLAQ--VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       159 IlAtG~~s~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |+|||+++.|++|.  +||++.|.|.++|+..|..+..+.+|+|+|||+|.||+|+|.+|++.+++|++..|++
T Consensus       143 vvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~  216 (531)
T PF00743_consen  143 VVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG  216 (531)
T ss_dssp             EEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred             EEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence            99999999999996  9999999999999999999999999999999999999999999999999999999998

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.5e-36  Score=245.86  Aligned_cols=211  Identities=50%  Similarity=0.938  Sum_probs=188.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      |+.+++||||||+||++|..|.+.|+++++|||.+.+||.|.+.....           ..++..|.++..+.+.+.+.+
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~-----------~~~ss~Y~~l~tn~pKe~~~~   73 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVE-----------VVHSSVYKSLRTNLPKEMMGY   73 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCccc-----------ccccchhhhhhccCChhhhcC
Confidence            368999999999999999999999999999999999999999864322           235567999999999999999


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                      +++|+...      ....||++.++.+||+++++++++...+.++++|..+....++.|.|.+.+..+......||.|++
T Consensus        74 ~dfpf~~~------~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvV  147 (448)
T KOG1399|consen   74 SDFPFPER------DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVV  147 (448)
T ss_pred             CCCCCccc------CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEE
Confidence            99999764      566779999999999999999999888999999999988753589999988654346788999999


Q ss_pred             ccCCCCCCccCCCCC--CCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEec
Q 024975          161 CNGHFSVPRLAQVPG--IDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (259)
Q Consensus       161 AtG~~s~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r  228 (259)
                      |||++..|++|.++|  .+.|.|..+|+..|..+..+.+++|+|||.|.||+|++.+++..+.+|++..+
T Consensus       148 ctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~  217 (448)
T KOG1399|consen  148 CTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV  217 (448)
T ss_pred             cccCcCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee
Confidence            999986699999998  66999999999999999999999999999999999999999999989998876

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.7e-35  Score=243.06  Aligned_cols=199  Identities=32%  Similarity=0.589  Sum_probs=178.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCc-EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~-v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      .+||+|||||++||++|++|.++|.+ ++||||++.+||+|.++                    .|+.+..+.+...++|
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~--------------------ry~~l~~~~p~~~~~~   67 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN--------------------RYPGLRLDSPKWLLGF   67 (443)
T ss_pred             cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc--------------------cCCceEECCchheecc
Confidence            57999999999999999999999998 99999999999999874                    6888888888888887


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC-CcEEEEEEecCCceEEEEeCEEE
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                      +.+|+.        +...|+....+..|+.+.++++++...+.+++.|..+..+++ +.|.|+++++....  +++|+||
T Consensus        68 ~~~p~~--------~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~--~~a~~vV  137 (443)
T COG2072          68 PFLPFR--------WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGE--LTADFVV  137 (443)
T ss_pred             CCCccC--------CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeee--EecCEEE
Confidence            777764        345666667788999999999988888888888888887664 58999999876221  7799999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|||+++.|++|.++|.+.|.+..+|+..+.+...+.+|+|+|||+|+||+|++.+|.+.+.+||+++|++
T Consensus       138 ~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~  208 (443)
T COG2072         138 VATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSP  208 (443)
T ss_pred             EeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=100.00  E-value=5e-34  Score=213.63  Aligned_cols=198  Identities=32%  Similarity=0.559  Sum_probs=135.3

Q ss_pred             EEECCChHHHHHHHHHHHcCCc-EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecCCC
Q 024975            6 AVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYP   84 (259)
Q Consensus         6 ~IIG~G~~Gl~~a~~L~~~g~~-v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (259)
                      +||||||+||++|.+|.++|.+ ++|||+++.+||.|.........   ..+       ..+.        ..+.+.++.
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~---~~~-------~~~~--------~~~~~~~~~   62 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRL---HSP-------SFFS--------SDFGLPDFE   62 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT----BSS-------SCCT--------GGSS--CCC
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCcc---ccC-------cccc--------ccccCCccc
Confidence            7999999999999999999998 99999999999999853211100   000       0000        000000000


Q ss_pred             CCccCC-CCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccC
Q 024975           85 FVARNY-EGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG  163 (259)
Q Consensus        85 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG  163 (259)
                      ...... ........++.+.++.+|+++++++++++  ++++++|+++.+.+ +.|.|+++++.    .++||+||+|||
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~--i~~~~~V~~v~~~~-~~w~v~~~~~~----~~~a~~VVlAtG  135 (203)
T PF13738_consen   63 SFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLE--IRFNTRVESVRRDG-DGWTVTTRDGR----TIRADRVVLATG  135 (203)
T ss_dssp             HSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGG--EETS--EEEEEEET-TTEEEEETTS-----EEEEEEEEE---
T ss_pred             ccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcc--cccCCEEEEEEEec-cEEEEEEEecc----eeeeeeEEEeee
Confidence            000000 00012345678899999999999999999  99999999999997 66999998863    789999999999


Q ss_pred             CCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          164 HFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       164 ~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++.|+.|.+++ ..+ ...+|+..+.....+++++|+|||+|.||+|++..|.+.+.+|++++|++
T Consensus       136 ~~~~p~~p~~~g-~~~-~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  136 HYSHPRIPDIPG-SAF-RPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             SSCSB---S-TT-GGC-SEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred             ccCCCCcccccc-ccc-cceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence            988999999999 222 26778888888888889999999999999999999999999999999997

...

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.7e-28  Score=190.91  Aligned_cols=200  Identities=24%  Similarity=0.310  Sum_probs=155.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCc-EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~-v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      ++|||+||||||+||+||.++.+++++ ++|+|+ ..+||......                              +...
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~~------------------------------~ven   50 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKTT------------------------------DVEN   50 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccccce------------------------------eecC
Confidence            469999999999999999999999998 666555 55664444321                              0001


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                      ++.++.             -.+..++.+.+.+.+..++++  +.. ..|.+++... +.|.|.+.++     .++++.||
T Consensus        51 ypg~~~-------------~~~g~~L~~~~~~~a~~~~~~--~~~-~~v~~v~~~~-~~F~v~t~~~-----~~~ak~vI  108 (305)
T COG0492          51 YPGFPG-------------GILGPELMEQMKEQAEKFGVE--IVE-DEVEKVELEG-GPFKVKTDKG-----TYEAKAVI  108 (305)
T ss_pred             CCCCcc-------------CCchHHHHHHHHHHHhhcCeE--EEE-EEEEEEeecC-ceEEEEECCC-----eEEEeEEE
Confidence            111111             012378888888888888888  555 6788887764 3788888875     49999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC----Ccccc
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV----ADETH  235 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~----~~~~~  235 (259)
                      +|||  ..++.|.+|+...|.+...+.+..++. .+.+++|+|+|+|.||+|.|..|.+.+++||+++|++    .+.+.
T Consensus       109 iAtG--~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~  185 (305)
T COG0492         109 IATG--AGARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILV  185 (305)
T ss_pred             ECcC--CcccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHH
Confidence            9999  778888888877899999999888888 7888999999999999999999999999999999999    45677


Q ss_pred             cCCCCC--CCceEeeeeeEEeec
Q 024975          236 EKQPGY--DNMWLHSMVRTKKCS  256 (259)
Q Consensus       236 ~~~~~~--~~~~~~~~v~~~~~~  256 (259)
                      +++...  ..+.+++.|+++.++
T Consensus       186 ~~l~~~~~i~~~~~~~i~ei~G~  208 (305)
T COG0492         186 ERLKKNVKIEVLTNTVVKEILGD  208 (305)
T ss_pred             HHHHhcCCeEEEeCCceeEEecC
Confidence            777665  444456888888875

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.95  E-value=1.6e-26  Score=183.29  Aligned_cols=199  Identities=24%  Similarity=0.333  Sum_probs=146.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      |||+|||||++|+++|..|.+.|.+|+|+|+.+ +||.+.....                              ...++.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~------------------------------~~~~~~   49 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTE------------------------------VENYPG   49 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeeccc------------------------------ccccCC
Confidence            699999999999999999999999999999976 6776654200                              000000


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                      ++             ......++..++.+.+.+++++  +++ ++|++++..+ +.|.+.+.++.    .+.+|+||+||
T Consensus        50 ~~-------------~~~~~~~~~~~l~~~~~~~gv~--~~~-~~v~~v~~~~-~~~~v~~~~~~----~~~~d~liiAt  108 (300)
T TIGR01292        50 FP-------------EGISGPELMEKMKEQAVKFGAE--IIY-EEVIKVDLSD-RPFKVKTGDGK----EYTAKAVIIAT  108 (300)
T ss_pred             CC-------------CCCChHHHHHHHHHHHHHcCCe--EEE-EEEEEEEecC-CeeEEEeCCCC----EEEeCEEEECC
Confidence            10             0112267888999999889988  777 8999998865 67888876644    79999999999


Q ss_pred             CCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC----cccccCC
Q 024975          163 GHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEKQ  238 (259)
Q Consensus       163 G~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~----~~~~~~~  238 (259)
                      |  +.++.|.+||...+.+...+...........+++++|+|+|.+|+|++..|.+.+.+|++++|++.    +.+.+.+
T Consensus       109 G--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l  186 (300)
T TIGR01292       109 G--ASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRL  186 (300)
T ss_pred             C--CCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHH
Confidence            9  678888888876665554444333333445678999999999999999999999999999999882    3334444


Q ss_pred             CCCCCceE--eeeeeEEee
Q 024975          239 PGYDNMWL--HSMVRTKKC  255 (259)
Q Consensus       239 ~~~~~~~~--~~~v~~~~~  255 (259)
                      .+..++.+  ++.+++++.
T Consensus       187 ~~~~gv~~~~~~~v~~i~~  205 (300)
T TIGR01292       187 RKNPNIEFLWNSTVKEIVG  205 (300)
T ss_pred             HhCCCeEEEeccEEEEEEc
Confidence            43335544  466766654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.94  E-value=1.2e-25  Score=189.74  Aligned_cols=200  Identities=19%  Similarity=0.189  Sum_probs=151.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .|||+||||||+|+++|.+|++.|++++|+++.  +||.|......                                 .
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~---------------------------------~  255 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGI---------------------------------E  255 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCcc---------------------------------c
Confidence            479999999999999999999999999999874  88887532100                                 0


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .++           ...+....++.+++.+.+++++++  ++.+++|+++...+ +.|.+.+.++.    .+.||.||+|
T Consensus       256 ~~~-----------~~~~~~~~~l~~~l~~~~~~~gv~--i~~~~~V~~I~~~~-~~~~V~~~~g~----~i~a~~vViA  317 (517)
T PRK15317        256 NFI-----------SVPETEGPKLAAALEEHVKEYDVD--IMNLQRASKLEPAA-GLIEVELANGA----VLKAKTVILA  317 (517)
T ss_pred             ccC-----------CCCCCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CeEEEEECCCC----EEEcCEEEEC
Confidence            000           011233478999999999999998  88899999998865 67888887654    7999999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC----cccccC
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEK  237 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~----~~~~~~  237 (259)
                      ||  +.++.|.+||...|.+...+..........++++|+|+|+|++|+|+|..|...+.+|+++.|.+.    ..+.+.
T Consensus       318 tG--~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~  395 (517)
T PRK15317        318 TG--ARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDK  395 (517)
T ss_pred             CC--CCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccccHHHHHH
Confidence            99  567888889877776666655544444445789999999999999999999999999999999873    223334


Q ss_pred             CCCC--CCceEeeeeeEEeec
Q 024975          238 QPGY--DNMWLHSMVRTKKCS  256 (259)
Q Consensus       238 ~~~~--~~~~~~~~v~~~~~~  256 (259)
                      +...  ..++.++.++++.+.
T Consensus       396 l~~~~gI~i~~~~~v~~i~~~  416 (517)
T PRK15317        396 LRSLPNVTIITNAQTTEVTGD  416 (517)
T ss_pred             HhcCCCcEEEECcEEEEEEcC
Confidence            4332  344445667766554

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.94  E-value=3e-25  Score=188.35  Aligned_cols=198  Identities=23%  Similarity=0.296  Sum_probs=145.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +|||+||||||+|+++|..|+++|++|+|+|+. .+||.+......                                 .
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~~i---------------------------------~   49 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITSEV---------------------------------V   49 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEecccc---------------------------------c
Confidence            589999999999999999999999999999995 578877642100                                 0


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .++           ........++..++.+.+.+++++  + ..++|+++...+ +.+.+.+.++     .+.+++||+|
T Consensus        50 ~~p-----------g~~~~~~~~l~~~l~~~~~~~gv~--~-~~~~V~~i~~~~-~~~~V~~~~g-----~~~a~~lVlA  109 (555)
T TIGR03143        50 NYP-----------GILNTTGPELMQEMRQQAQDFGVK--F-LQAEVLDVDFDG-DIKTIKTARG-----DYKTLAVLIA  109 (555)
T ss_pred             cCC-----------CCcCCCHHHHHHHHHHHHHHcCCE--E-eccEEEEEEecC-CEEEEEecCC-----EEEEeEEEEC
Confidence            011           001123367888888888888888  5 467888888754 5567776542     5889999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC----cccccC
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEK  237 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~----~~~~~~  237 (259)
                      ||  +.++.|.++|...+.+...+.+.........+++++|||+|++|+|+|..|.+.+.+|++++|.+.    ..+.++
T Consensus       110 TG--a~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~  187 (555)
T TIGR03143       110 TG--ASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEK  187 (555)
T ss_pred             CC--CccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccccCHHHHHH
Confidence            99  678889999876555555544444444445689999999999999999999999999999999883    223334


Q ss_pred             CCCC--CCceEeeeeeEEee
Q 024975          238 QPGY--DNMWLHSMVRTKKC  255 (259)
Q Consensus       238 ~~~~--~~~~~~~~v~~~~~  255 (259)
                      ++..  ..+..++.|+++.+
T Consensus       188 ~~~~~gV~i~~~~~V~~i~~  207 (555)
T TIGR03143       188 VKNHPKIEVKFNTELKEATG  207 (555)
T ss_pred             HHhCCCcEEEeCCEEEEEEc
Confidence            4333  34444677777764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK10262 thioredoxin reductase; Provisional

Probab=99.94  E-value=5.9e-25  Score=175.55  Aligned_cols=199  Identities=18%  Similarity=0.262  Sum_probs=143.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+||+||||||+||++|..|.++|.++++||+. ..||.+.....                                 +.
T Consensus         6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~---------------------------------~~   51 (321)
T PRK10262          6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTE---------------------------------VE   51 (321)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCce---------------------------------EC
Confidence            489999999999999999999999999999964 57776654210                                 00


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      ++|..          .......++.+++.+.+..++.+  +..+ +|+.++... +.|.+..+.     ..+.||+||+|
T Consensus        52 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~v~~v~~~~-~~~~v~~~~-----~~~~~d~vilA  112 (321)
T PRK10262         52 NWPGD----------PNDLTGPLLMERMHEHATKFETE--IIFD-HINKVDLQN-RPFRLTGDS-----GEYTCDALIIA  112 (321)
T ss_pred             CCCCC----------CCCCCHHHHHHHHHHHHHHCCCE--EEee-EEEEEEecC-CeEEEEecC-----CEEEECEEEEC
Confidence            11110          11122367788888888888776  6554 677787665 677776543     25899999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC----cc----
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DE----  233 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~----~~----  233 (259)
                      ||  +.++.|.+||...+.+...+.+.........+++++|+|+|.+|+|+|..|.+.+.+|++++|++.    +.    
T Consensus       113 tG--~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~  190 (321)
T PRK10262        113 TG--ASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKR  190 (321)
T ss_pred             CC--CCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHH
Confidence            99  678889999977666666666655555556789999999999999999999999999999999872    11    


Q ss_pred             cccCCCCCCCceE--eeeeeEEeec
Q 024975          234 THEKQPGYDNMWL--HSMVRTKKCS  256 (259)
Q Consensus       234 ~~~~~~~~~~~~~--~~~v~~~~~~  256 (259)
                      +.+.+ +..++.+  ++.|+++.+.
T Consensus       191 ~~~~l-~~~gV~i~~~~~v~~v~~~  214 (321)
T PRK10262        191 LMDKV-ENGNIILHTNRTLEEVTGD  214 (321)
T ss_pred             HHhhc-cCCCeEEEeCCEEEEEEcC
Confidence            22222 2334444  4667777654

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.94  E-value=6.3e-25  Score=185.12  Aligned_cols=200  Identities=19%  Similarity=0.210  Sum_probs=144.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ++||+||||||+|+++|.+|++.|.+|+|+|+  .+||.+.....                   +           ..+.
T Consensus       212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~-------------------~-----------~~~~  259 (515)
T TIGR03140       212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVG-------------------I-----------ENLI  259 (515)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcC-------------------c-----------cccc
Confidence            48999999999999999999999999999985  47776653100                   0           0000


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      ..+              +....++...+.+.+.+.+++  ++.+++|+++...+ +.+.+.++++.    .+.||+||+|
T Consensus       260 ~~~--------------~~~~~~l~~~l~~~l~~~gv~--i~~~~~V~~I~~~~-~~~~v~~~~g~----~i~~d~lIlA  318 (515)
T TIGR03140       260 SVP--------------YTTGSQLAANLEEHIKQYPID--LMENQRAKKIETED-GLIVVTLESGE----VLKAKSVIVA  318 (515)
T ss_pred             ccC--------------CCCHHHHHHHHHHHHHHhCCe--EEcCCEEEEEEecC-CeEEEEECCCC----EEEeCEEEEC
Confidence            011              122377888888888888998  88999999998765 66888876654    7999999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCc----ccccC
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----ETHEK  237 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~----~~~~~  237 (259)
                      ||  +.++.|.+||...+.+...+...........+++|+|+|+|++|+|+|..|.+.+.+|+++.+.+..    .+.+.
T Consensus       319 tG--a~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~~~  396 (515)
T TIGR03140       319 TG--ARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQDK  396 (515)
T ss_pred             CC--CCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHHHH
Confidence            99  5678888888655544444443333333346789999999999999999999999999999988722    22333


Q ss_pred             CCC--CCCceEeeeeeEEeec
Q 024975          238 QPG--YDNMWLHSMVRTKKCS  256 (259)
Q Consensus       238 ~~~--~~~~~~~~~v~~~~~~  256 (259)
                      +..  ..++..++.|+++++.
T Consensus       397 l~~~~gV~i~~~~~v~~i~~~  417 (515)
T TIGR03140       397 LKSLPNVDILTSAQTTEIVGD  417 (515)
T ss_pred             HhcCCCCEEEECCeeEEEEcC
Confidence            432  2344445666666543

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.93  E-value=1.9e-25  Score=182.18  Aligned_cols=226  Identities=22%  Similarity=0.261  Sum_probs=145.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccccc-ccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   80 (259)
                      +||++|||+||+|..+|.++++.|.+++++|+...+||+|...        +|.|++.++.+... ..+...........
T Consensus         4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~--------GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~   75 (454)
T COG1249           4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV--------GCIPSKALLHAAEVIEEARHAAKEYGISA   75 (454)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee--------CccccHHHHHHHHHHHHHhhcccccceec
Confidence            5999999999999999999999999999999987899999887        99999888776543 33332222111111


Q ss_pred             cC--CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           81 QA--YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        81 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                      ..  +.|....    .+...  ....+...+..+.++.+++  +..+. ..-   .+.+...|... +   ...++++++
T Consensus        76 ~~~~id~~~~~----~~k~~--v~~~~~~~~~~l~~~~~V~--vi~G~-a~f---~~~~~v~V~~~-~---~~~~~a~~i  139 (454)
T COG1249          76 EVPKIDFEKLL----ARKDK--VVRLLTGGVEGLLKKNGVD--VIRGE-ARF---VDPHTVEVTGE-D---KETITADNI  139 (454)
T ss_pred             CCCCcCHHHHH----HHHHH--HHHHHhhhHHHHHhhCCCE--EEEEE-EEE---CCCCEEEEcCC-C---ceEEEeCEE
Confidence            11  1110000    00000  0023334555566566777  55442 111   11133334333 1   258999999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC------Cc
Q 024975          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV------AD  232 (259)
Q Consensus       159 IlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~------~~  232 (259)
                      |+|||  |.|..|+.++++...  ...+....... .-+++++|||+|+.|+|+|..+.++|.+||+++|.+      ++
T Consensus       140 iIATG--S~p~~~~~~~~~~~~--~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~  214 (454)
T COG1249         140 IIATG--SRPRIPPGPGIDGAR--ILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDP  214 (454)
T ss_pred             EEcCC--CCCcCCCCCCCCCCe--EEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCH
Confidence            99999  899999988877521  23333323333 345899999999999999999999999999999999      44


Q ss_pred             ccccCC---CCCCCce--EeeeeeEEeec
Q 024975          233 ETHEKQ---PGYDNMW--LHSMVRTKKCS  256 (259)
Q Consensus       233 ~~~~~~---~~~~~~~--~~~~v~~~~~~  256 (259)
                      ++.+.+   +++..++  .++.++.++..
T Consensus       215 ei~~~~~~~l~~~gv~i~~~~~v~~~~~~  243 (454)
T COG1249         215 EISKELTKQLEKGGVKILLNTKVTAVEKK  243 (454)
T ss_pred             HHHHHHHHHHHhCCeEEEccceEEEEEec
Confidence            443333   2223343  44666666543

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.93  E-value=8.7e-25  Score=181.46  Aligned_cols=218  Identities=16%  Similarity=0.179  Sum_probs=133.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccc-cccceeccccccce
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMG   79 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   79 (259)
                      +.|||+||||||+|+++|..|++.|.+|+|+|+. .+||+|...        +|.|.+.++.... +..+. ....  ++
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~--------gciPsk~l~~~a~~~~~~~-~~~~--~g   68 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNV--------GCVPKKVMWYASDLAERMH-DAAD--YG   68 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceecc--------CcCccHHHHHHHHHHHHHh-HHhh--cC
Confidence            4699999999999999999999999999999995 599999876        7777765554332 12111 1111  11


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a  155 (259)
                      +.......     ..+.......    +.+.+.+...+.+.+++  ++.++.+.    .+++  +|.++ +    ..+.|
T Consensus        69 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g~~~~----~~~~--~v~v~-~----~~~~~  130 (450)
T TIGR01421        69 FYQNLENT-----FNWPELKEKRDAYVDRLNGIYQKNLEKNKVD--VIFGHARF----TKDG--TVEVN-G----RDYTA  130 (450)
T ss_pred             cccCCcCc-----cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEE----ccCC--EEEEC-C----EEEEe
Confidence            10000000     0000000011    12333345555566887  77765432    1212  34442 2    36899


Q ss_pred             CEEEEccCCCCCCccC-CCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC----
Q 024975          156 DAVVVCNGHFSVPRLA-QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV----  230 (259)
Q Consensus       156 d~VIlAtG~~s~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~----  230 (259)
                      |+||+|||  +.|..| .+||.+..    ..+..+... ...+++++|||+|++|+|+|..|.+.+.+||+++|.+    
T Consensus       131 d~vIiAtG--s~p~~p~~i~g~~~~----~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~  203 (450)
T TIGR01421       131 PHILIATG--GKPSFPENIPGAELG----TDSDGFFAL-EELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR  203 (450)
T ss_pred             CEEEEecC--CCCCCCCCCCCCcee----EcHHHhhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence            99999999  788888 78876421    111112111 1235899999999999999999999999999999987    


Q ss_pred             --CcccccCC---CCCCCce--EeeeeeEEee
Q 024975          231 --ADETHEKQ---PGYDNMW--LHSMVRTKKC  255 (259)
Q Consensus       231 --~~~~~~~~---~~~~~~~--~~~~v~~~~~  255 (259)
                        ++++.+.+   ++..++.  .++.|++++.
T Consensus       204 ~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~  235 (450)
T TIGR01421       204 SFDSMISETITEEYEKEGINVHKLSKPVKVEK  235 (450)
T ss_pred             ccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEE
Confidence              22333222   2223444  4466777764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.92  E-value=2.4e-24  Score=179.04  Aligned_cols=196  Identities=16%  Similarity=0.188  Sum_probs=126.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .|||+||||||+|+++|..++++|.+|+|+|+ +.+||+|...        +|.|.+.++.+..........+.......
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~--------gciPsk~l~~~a~~~~~~~~~~~~g~~~~   72 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIR--------GCVPKKLMVYGSTFGGEFEDAAGYGWTVG   72 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecC--------CcCchHHHHHHHHHHHHHhhhHhcCcCCC
Confidence            58999999999999999999999999999999 5799999876        78887766554322111111111000000


Q ss_pred             --CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           82 --AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                        ...|...      ..........+..+++..+.+.+++  +..+ ++..+..   +.+.+. .++    ..+.||+||
T Consensus        73 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~gV~--~~~g-~~~~v~~---~~v~v~-~~g----~~~~~d~lI  135 (446)
T TIGR01424        73 KARFDWKKL------LQKKDDEIARLSGLYKRLLANAGVE--LLEG-RARLVGP---NTVEVL-QDG----TTYTAKKIL  135 (446)
T ss_pred             CCCcCHHHH------HHHHHHHHHHHHHHHHHHHHhCCcE--EEEE-EEEEecC---CEEEEe-cCC----eEEEcCEEE
Confidence              0000000      0000000033445666666677887  6554 5555542   334443 222    368999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|||  +.|..|++||.+..    ..+..... ....+++++|||+|.+|+|+|..+.+.+.+|+++++.+
T Consensus       136 iATG--s~p~~p~i~G~~~~----~~~~~~~~-l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~  199 (446)
T TIGR01424       136 IAVG--GRPQKPNLPGHELG----ITSNEAFH-LPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE  199 (446)
T ss_pred             EecC--CcCCCCCCCCccce----echHHhhc-ccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC
Confidence            9999  78888888886431    11111111 11235889999999999999999999999999999987

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.92  E-value=6.4e-24  Score=177.29  Aligned_cols=216  Identities=19%  Similarity=0.200  Sum_probs=131.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (259)
                      +|||+||||||+|+.+|..|++.|.+|+|+|+.+.+||+|...        +|.|.+.++... .+..+.. .......+
T Consensus         4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~--------gciP~K~l~~~a~~~~~~~~-~~~~g~~~   74 (471)
T PRK06467          4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNV--------GCIPSKALLHVAKVIEEAKA-LAEHGIVF   74 (471)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCC--------CcccHHHHHHHHHHHHHHhh-hhhcCccc
Confidence            5999999999999999999999999999999987899999765        677665544422 1221111 10000000


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                      ...               ......+.           ..+...+++.+++  ++.+ ++..+.   .+.+.|...+  ++
T Consensus        75 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~--~~~g-~a~~~~---~~~v~v~~~~--g~  131 (471)
T PRK06467         75 GEP---------------KIDIDKMRARKEKVVKQLTGGLAGMAKGRKVT--VVNG-LGKFTG---GNTLEVTGED--GK  131 (471)
T ss_pred             CCC---------------CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEcc---CCEEEEecCC--Cc
Confidence            000               00012222           2223344555777  5554 333322   2445555433  22


Q ss_pred             eEEEEeCEEEEccCCCCCCc-cCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEec
Q 024975          150 VEEETFDAVVVCNGHFSVPR-LAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r  228 (259)
                      ...+.||+||+|||  +.|. .|.+++...   ....+....... ..+++++|||+|++|+|+|..|.+.|.+||++++
T Consensus       132 ~~~~~~d~lViATG--s~p~~~p~~~~~~~---~v~~~~~~~~~~-~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~  205 (471)
T PRK06467        132 TTVIEFDNAIIAAG--SRPIQLPFIPHDDP---RIWDSTDALELK-EVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEM  205 (471)
T ss_pred             eEEEEcCEEEEeCC--CCCCCCCCCCCCCC---cEEChHHhhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEec
Confidence            34799999999999  6775 344444221   122222222222 2348999999999999999999999999999999


Q ss_pred             CC------Cccc----ccCCCCCCCceEeeeeeEEee
Q 024975          229 SV------ADET----HEKQPGYDNMWLHSMVRTKKC  255 (259)
Q Consensus       229 ~~------~~~~----~~~~~~~~~~~~~~~v~~~~~  255 (259)
                      .+      ++++    .+.+.+..++..++.|++++.
T Consensus       206 ~~~il~~~d~~~~~~~~~~l~~~v~i~~~~~v~~i~~  242 (471)
T PRK06467        206 FDQVIPAADKDIVKVFTKRIKKQFNIMLETKVTAVEA  242 (471)
T ss_pred             CCCCCCcCCHHHHHHHHHHHhhceEEEcCCEEEEEEE
Confidence            87      2222    233333345555677776653

>PRK06370 mercuric reductase; Validated

Probab=99.91  E-value=7.2e-24  Score=177.14  Aligned_cols=188  Identities=21%  Similarity=0.266  Sum_probs=121.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +|||+|||+||+|+++|..|+++|.+|+|+|+. .+||+|...        +|.|.+.++..............  +++.
T Consensus         5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~--------gciPsk~l~~~a~~~~~~~~~~~--~g~~   73 (463)
T PRK06370          5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNT--------GCVPTKTLIASARAAHLARRAAE--YGVS   73 (463)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceecc--------ccCcHHHHHHHHHHHHHHHHHHh--cCcc
Confidence            489999999999999999999999999999995 689998765        77776655543322211111111  1110


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                      ...            ..-.....+.           ..+...+++. +++  ++.++.+.    .  +..++.++.    
T Consensus        74 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--v~~g~~~~----~--~~~~v~v~~----  129 (463)
T PRK06370         74 VGG------------PVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVD--VFRGHARF----E--SPNTVRVGG----  129 (463)
T ss_pred             cCc------------cCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcE--EEEEEEEE----c--cCCEEEECc----
Confidence            000            0000012222           2334444444 777  66665432    1  123344422    


Q ss_pred             eEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~  229 (259)
                       ..+.||+||+|||  +.|..|.+||.+..  ........... ...+++++|||+|++|+|+|..|.+.+.+|++++|.
T Consensus       130 -~~~~~d~lViATG--s~p~~p~i~G~~~~--~~~~~~~~~~~-~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~  203 (463)
T PRK06370        130 -ETLRAKRIFINTG--ARAAIPPIPGLDEV--GYLTNETIFSL-DELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERG  203 (463)
T ss_pred             -EEEEeCEEEEcCC--CCCCCCCCCCCCcC--ceEcchHhhCc-cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence             3689999999999  78999999987642  11222222211 223589999999999999999999999999999998


Q ss_pred             C
Q 024975          230 V  230 (259)
Q Consensus       230 ~  230 (259)
                      +
T Consensus       204 ~  204 (463)
T PRK06370        204 P  204 (463)
T ss_pred             C
Confidence            7

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.91  E-value=1.1e-23  Score=176.09  Aligned_cols=217  Identities=18%  Similarity=0.150  Sum_probs=133.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (259)
                      +|||+||||||+|+++|..|.++|.+|+|||+.+.+||+|...        ++.|.+.+.... .+..+....     .+
T Consensus         5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~--------gcipsk~l~~~~~~~~~~~~~~-----~~   71 (461)
T PRK05249          5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHT--------GTIPSKALREAVLRLIGFNQNP-----LY   71 (461)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccccc--------CCCCHHHHHHHHHHHHHHhhhh-----hh
Confidence            4899999999999999999999999999999988899998765        455443222211 111110000     00


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEE-----------VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                      ..++..           ...+..+           +..++.+.+.+.+++  ++.+ ++..+.   .+.+.+...++  .
T Consensus        72 ~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~~~---~~~~~v~~~~g--~  132 (461)
T PRK05249         72 SSYRVK-----------LRITFADLLARADHVINKQVEVRRGQYERNRVD--LIQG-RARFVD---PHTVEVECPDG--E  132 (461)
T ss_pred             cccCCc-----------CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEE-EEEEec---CCEEEEEeCCC--c
Confidence            000000           0011122           233445555666777  6655 333332   24566665443  2


Q ss_pred             eEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~  229 (259)
                      ...+.||+||+|||  +.|..|++++...   ...............+++++|||+|++|+|+|..|.+.+.+|++++|+
T Consensus       133 ~~~~~~d~lviATG--s~p~~p~~~~~~~---~~v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~  207 (461)
T PRK05249        133 VETLTADKIVIATG--SRPYRPPDVDFDH---PRIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTR  207 (461)
T ss_pred             eEEEEcCEEEEcCC--CCCCCCCCCCCCC---CeEEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence            34689999999999  7888877665432   222222211122234689999999999999999999999999999998


Q ss_pred             C------Ccccc----cCCCC-CCCceEeeeeeEEee
Q 024975          230 V------ADETH----EKQPG-YDNMWLHSMVRTKKC  255 (259)
Q Consensus       230 ~------~~~~~----~~~~~-~~~~~~~~~v~~~~~  255 (259)
                      +      ++++.    +.+.+ ...+..++.|++++.
T Consensus       208 ~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~  244 (461)
T PRK05249        208 DRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEG  244 (461)
T ss_pred             CCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEE
Confidence            8      22222    22222 133334567777764

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.91  E-value=3.3e-25  Score=176.35  Aligned_cols=214  Identities=21%  Similarity=0.207  Sum_probs=128.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC-CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccce-eccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLR-VNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   79 (259)
                      .+|+++||.||++|++|..|.+.+ .++..||+.+.+  .|+..         +......+......++. ...|...+.
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~g---------mll~~~~~q~~fl~Dlvt~~~P~s~~s   70 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPG---------MLLPGARMQVSFLKDLVTLRDPTSPFS   70 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGG---------G--SS-B-SS-TTSSSSTTT-TTSTTS
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCc---------cCCCCCccccccccccCcCcCCCCccc
Confidence            589999999999999999999986 899999997654  23321         11111111111111111 112222222


Q ss_pred             ecCCCCCccCCC-CCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC---cEEEEEEecCCceEEEEe
Q 024975           80 FQAYPFVARNYE-GSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN---KWKVKSRKKDDVVEEETF  155 (259)
Q Consensus        80 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~---~~~v~~~~g~~~~~~~~a  155 (259)
                      |..+-....-.. .-.....+|++.+|.+|++|.++++...  ++++++|++|....++   .|.|.+.+.++....+.|
T Consensus        71 flnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~--v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~a  148 (341)
T PF13434_consen   71 FLNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQ--VRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRA  148 (341)
T ss_dssp             HHHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTT--EEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEE
T ss_pred             HHHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCc--eEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEe
Confidence            222211110000 0012356789999999999999998877  9999999999987633   499999765566679999


Q ss_pred             CEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCC--CCCCCeEEEEccCcCHHHHHHHHhcccC--eEEEEecCC
Q 024975          156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN--PFQDQVVILIGHYASGLDIKRDLAGFAK--EVHIASRSV  230 (259)
Q Consensus       156 d~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~viG~G~~a~e~a~~l~~~~~--~v~~~~r~~  230 (259)
                      +.||+|+|  ..|.+|...........++|+..+....  ..+.++|+|||+|.||.|++..|.+.+.  +|+|+.|++
T Consensus       149 r~vVla~G--~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~  225 (341)
T PF13434_consen  149 RNVVLATG--GQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP  225 (341)
T ss_dssp             SEEEE------EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred             CeEEECcC--CCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence            99999999  7888887443222235778888766442  4567999999999999999999988764  799999999

>PLN02507 glutathione reductase

Probab=99.91  E-value=7.6e-24  Score=177.52  Aligned_cols=225  Identities=15%  Similarity=0.111  Sum_probs=136.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEee---------CCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK---------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN   72 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~---------~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (259)
                      .||++|||+||+|+.+|..|.++|.+|+|+|+         ...+||+|...        +|.|.+.++...........
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~--------GciPsK~l~~~a~~~~~~~~   96 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIR--------GCVPKKILVYGATFGGEFED   96 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeecc--------CchhHHHHHHHHHHHHHHHH
Confidence            38999999999999999999999999999996         35689999765        77777766554322111111


Q ss_pred             cccccceec---CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           73 LPRELMGFQ---AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        73 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                      .........   ...|...      .........++...++..+...+++  ++.+ ++..+.   ...++|...++  +
T Consensus        97 ~~~~G~~~~~~~~id~~~~------~~~~~~~~~~~~~~~~~~l~~~gV~--~i~g-~a~~vd---~~~v~V~~~~g--~  162 (499)
T PLN02507         97 AKNYGWEINEKVDFNWKKL------LQKKTDEILRLNGIYKRLLANAGVK--LYEG-EGKIVG---PNEVEVTQLDG--T  162 (499)
T ss_pred             HHhcCcccCCCCccCHHHH------HHHHHHHHHHHHHHHHHHHHhCCcE--EEEE-EEEEec---CCEEEEEeCCC--c
Confidence            111011000   0000000      0000000012223334444555776  4443 444443   24567766543  2


Q ss_pred             eEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~  229 (259)
                      ...+.||+||+|||  +.|..|.+||....    ......... ...+++++|||+|.+|+|+|..+.+.+.+|++++|.
T Consensus       163 ~~~~~~d~LIIATG--s~p~~p~ipG~~~~----~~~~~~~~l-~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~  235 (499)
T PLN02507        163 KLRYTAKHILIATG--SRAQRPNIPGKELA----ITSDEALSL-EELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRK  235 (499)
T ss_pred             EEEEEcCEEEEecC--CCCCCCCCCCccce----echHHhhhh-hhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEec
Confidence            34689999999999  78888888886431    111111111 123589999999999999999999999999999998


Q ss_pred             C------Cccccc----CCCC-CCCceEeeeeeEEee
Q 024975          230 V------ADETHE----KQPG-YDNMWLHSMVRTKKC  255 (259)
Q Consensus       230 ~------~~~~~~----~~~~-~~~~~~~~~v~~~~~  255 (259)
                      +      ++++.+    .+.+ ...+..++.|++++.
T Consensus       236 ~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~  272 (499)
T PLN02507        236 ELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTK  272 (499)
T ss_pred             CCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEE
Confidence            7      222222    2222 234445577777764

>PRK06116 glutathione reductase; Validated

Probab=99.91  E-value=2.4e-24  Score=179.52  Aligned_cols=215  Identities=16%  Similarity=0.224  Sum_probs=133.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccccccc-ceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKS-LRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   80 (259)
                      .|||+||||||+|+++|..|+++|.+|+|+|+. .+||+|...        +|.|.+.++....... +...........
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~--------gciP~k~l~~~~~~~~~~~~~~~~~g~~~   74 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNV--------GCVPKKLMWYGAQIAEAFHDYAPGYGFDV   74 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhcc--------CcchHHHHHHHHHHHHHHHhHHHhcCCCC
Confidence            589999999999999999999999999999995 799999764        6676665544332211 111011000000


Q ss_pred             c--CCCCCccCCCCCCCCCCCCC----HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEE
Q 024975           81 Q--AYPFVARNYEGSVDLRRYPG----HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET  154 (259)
Q Consensus        81 ~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~  154 (259)
                      .  ...|.          .....    ...+...+.+.+.+.+++  ++.+ +++.+.     ..+|++ ++    ..+.
T Consensus        75 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g-~~~~v~-----~~~v~~-~g----~~~~  131 (450)
T PRK06116         75 TENKFDWA----------KLIANRDAYIDRLHGSYRNGLENNGVD--LIEG-FARFVD-----AHTVEV-NG----ERYT  131 (450)
T ss_pred             CCCCcCHH----------HHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEcc-----CCEEEE-CC----EEEE
Confidence            0  00000          00000    022333344455566887  6655 444442     234555 32    3799


Q ss_pred             eCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC---
Q 024975          155 FDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---  231 (259)
Q Consensus       155 ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~---  231 (259)
                      ||+||+|||  +.|..|.++|...    ..++...... ...+++++|||+|.+|+|+|..|.+.+.+|++++|.+.   
T Consensus       132 ~d~lViATG--s~p~~p~i~g~~~----~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  204 (450)
T PRK06116        132 ADHILIATG--GRPSIPDIPGAEY----GITSDGFFAL-EELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR  204 (450)
T ss_pred             eCEEEEecC--CCCCCCCCCCcce----eEchhHhhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc
Confidence            999999999  7888888888643    1222222211 22358999999999999999999999999999999872   


Q ss_pred             ---cccccCC---CCCCCc--eEeeeeeEEee
Q 024975          232 ---DETHEKQ---PGYDNM--WLHSMVRTKKC  255 (259)
Q Consensus       232 ---~~~~~~~---~~~~~~--~~~~~v~~~~~  255 (259)
                         +++.+.+   ++..++  ..++.|++++.
T Consensus       205 ~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~  236 (450)
T PRK06116        205 GFDPDIRETLVEEMEKKGIRLHTNAVPKAVEK  236 (450)
T ss_pred             ccCHHHHHHHHHHHHHCCcEEECCCEEEEEEE
Confidence               2222212   222334  44577777764

>PTZ00058 glutathione reductase; Provisional

Probab=99.91  E-value=4.2e-24  Score=179.91  Aligned_cols=221  Identities=13%  Similarity=0.158  Sum_probs=136.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .||++||||||+|+++|..+++.|.+|+|+|++ .+||+|...        +|.|.+.++.+..................
T Consensus        48 ~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~--------GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~  118 (561)
T PTZ00058         48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNV--------GCVPKKIMFNAASIHDILENSRHYGFDTQ  118 (561)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccccc--------CCCCCchhhhhcccHHHHHHHHhcCCCcc
Confidence            589999999999999999999999999999996 699999876        88888877765543322211111110000


Q ss_pred             -CCCCCccCCCCCCCCCCCCCHHH----HHHHHHHHHHHhCCceeEEeceeE-EE---EE------------EeCCCcEE
Q 024975           82 -AYPFVARNYEGSVDLRRYPGHEE----VLRYLQNFAREFGVDQVVRLHTEV-LN---AR------------LVESNKWK  140 (259)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~v~~~~~v-~~---i~------------~~~~~~~~  140 (259)
                       ...+.          ......+.    +.+.+.+.+++.+++  +..+... ++   +.            ..+++..+
T Consensus       119 ~~~d~~----------~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~  186 (561)
T PTZ00058        119 FSFNLP----------LLVERRDKYIRRLNDIYRQNLKKDNVE--YFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVT  186 (561)
T ss_pred             CccCHH----------HHHHHHHHHHHHHHHHHHHHHhhCCcE--EEEEEEEEecCCEEEeeccccccccccccccccce
Confidence             00000          00000122    233344555556777  6554421 11   00            00012222


Q ss_pred             EE------EEecCCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHH
Q 024975          141 VK------SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKR  214 (259)
Q Consensus       141 v~------~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~  214 (259)
                      |.      .+++    ..++||+||+|||  +.|..|.++|.+.    ...+..+....  .+++++|||+|.+|+|+|.
T Consensus       187 v~~~~~~~~~~g----~~i~ad~lVIATG--S~P~~P~IpG~~~----v~ts~~~~~l~--~pk~VvIIGgG~iGlE~A~  254 (561)
T PTZ00058        187 IVSAGVSQLDDG----QVIEGKNILIAVG--NKPIFPDVKGKEF----TISSDDFFKIK--EAKRIGIAGSGYIAVELIN  254 (561)
T ss_pred             eeeccceecCCC----cEEECCEEEEecC--CCCCCCCCCCcee----EEEHHHHhhcc--CCCEEEEECCcHHHHHHHH
Confidence            31      1222    2699999999999  8899999888642    22333332221  2689999999999999999


Q ss_pred             HHhcccCeEEEEecCC------Cccccc----CCCC-CCCceEeeeeeEEee
Q 024975          215 DLAGFAKEVHIASRSV------ADETHE----KQPG-YDNMWLHSMVRTKKC  255 (259)
Q Consensus       215 ~l~~~~~~v~~~~r~~------~~~~~~----~~~~-~~~~~~~~~v~~~~~  255 (259)
                      .+.+.|.+|+++.|.+      ++++.+    .+.+ ...+..+..|+++++
T Consensus       255 ~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~  306 (561)
T PTZ00058        255 VVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEK  306 (561)
T ss_pred             HHHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEe
Confidence            9999999999999987      222222    2221 234444566777764

>TIGR02053 MerA mercuric reductase

Probab=99.91  E-value=5.3e-24  Score=178.05  Aligned_cols=194  Identities=21%  Similarity=0.297  Sum_probs=123.5

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      |||+||||||+|+++|..|+++|.+|+|+|+.+ +||+|...        +|.|.+.++.............   +++..
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~--------gciPsk~l~~~~~~~~~~~~~~---~g~~~   68 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNV--------GCVPSKMLLRAAEVAHYARKPP---FGGLA   68 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeee--------cEEccHHHHHHHHHHHHhhccC---ccccc
Confidence            799999999999999999999999999999965 89998765        7777665554332222111110   11100


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHH-----HHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCE
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRY-----LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~  157 (259)
                      ...  .    ..+........++...     +...+++.+++  +..+. +..+     +..+|.+.++.   ..+.+|+
T Consensus        69 ~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g~-~~~~-----~~~~v~v~~g~---~~~~~~~  131 (463)
T TIGR02053        69 ATV--A----VDFGELLEGKREVVEELRHEKYEDVLSSYGVD--YLRGR-ARFK-----DPKTVKVDLGR---EVRGAKR  131 (463)
T ss_pred             CCC--c----cCHHHHHHHHHHHHHHHhhhhHHHHHHhCCcE--EEEEE-EEEc-----cCCEEEEcCCe---EEEEeCE
Confidence            000  0    0011111111233222     23445566777  65543 3322     22455554432   3689999


Q ss_pred             EEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       158 VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ||+|||  +.|..|.+||.+.. + ...+....... ..+++++|||+|.+|+|+|..|.+.+.+|++++|.+
T Consensus       132 lIiATG--s~p~~p~i~G~~~~-~-~~~~~~~~~~~-~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~  199 (463)
T TIGR02053       132 FLIATG--ARPAIPPIPGLKEA-G-YLTSEEALALD-RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD  199 (463)
T ss_pred             EEEcCC--CCCCCCCCCCcccC-c-eECchhhhCcc-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence            999999  78899999987653 1 12222222211 234899999999999999999999999999999987

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.91  E-value=2.6e-23  Score=173.93  Aligned_cols=191  Identities=21%  Similarity=0.288  Sum_probs=119.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .||++||||||+|+++|..|+++|.+|+|+|+.. +||+|...        +|.|.+.++..............      
T Consensus         4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~--------gciP~k~l~~~~~~~~~~~~~~~------   68 (462)
T PRK06416          4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNR--------GCIPSKALLHAAERADEARHSED------   68 (462)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeec--------ccCCcHHHHHhhhHHHHHHHHHh------
Confidence            5899999999999999999999999999999977 99999865        66666554443222111111100      


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCce
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV  150 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~  150 (259)
                       +.+..        .........+.++           +...+++.+++  +..+ +++.+.   ...+.+...++.   
T Consensus        69 -~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~~~---~~~~~v~~~~~~---  130 (462)
T PRK06416         69 -FGIKA--------ENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVD--IIRG-EAKLVD---PNTVRVMTEDGE---  130 (462)
T ss_pred             -cCccc--------CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEcc---CCEEEEecCCCc---
Confidence             00000        0001111333333           44445556777  6655 344332   134555432222   


Q ss_pred             EEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       151 ~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..+.||+||+|||  +.|..|  ||... .+...+...........+++++|||+|++|+|+|..|.+.+.+|++++|.+
T Consensus       131 ~~~~~d~lViAtG--s~p~~~--pg~~~-~~~~v~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~  205 (462)
T PRK06416        131 QTYTAKNIILATG--SRPREL--PGIEI-DGRVIWTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP  205 (462)
T ss_pred             EEEEeCEEEEeCC--CCCCCC--CCCCC-CCCeEEcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            4799999999999  666543  34432 222222221111112235899999999999999999999999999999987

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.91  E-value=2.2e-23  Score=173.14  Aligned_cols=183  Identities=18%  Similarity=0.213  Sum_probs=118.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC-cCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ-VGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      .|||+||||||+|+++|..|+++|.+|+|+|+.+. +||+|...        +|.|.+.++.....              
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~--------gciP~k~~~~~~~~--------------   60 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINI--------GCIPTKTLLVAAEK--------------   60 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecC--------ccccchHhhhhhhc--------------
Confidence            58999999999999999999999999999999864 69988654        55554433332110              


Q ss_pred             cCCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975           81 QAYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad  156 (259)
                       ...|...          ....    ..+.....+.+.+.+++  ++.++ +..+   +++  +|.+..++ ....+.||
T Consensus        61 -~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~gV~--~~~g~-~~~~---~~~--~v~v~~~~-~~~~~~~d  120 (438)
T PRK07251         61 -NLSFEQV----------MATKNTVTSRLRGKNYAMLAGSGVD--LYDAE-AHFV---SNK--VIEVQAGD-EKIELTAE  120 (438)
T ss_pred             -CCCHHHH----------HHHHHHHHHHHHHHHHHHHHhCCCE--EEEEE-EEEc---cCC--EEEEeeCC-CcEEEEcC
Confidence             0000000          0000    11222233445556776  55443 2222   213  33333321 12468999


Q ss_pred             EEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       157 ~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +||+|||  +.|+.|.+||.....+ ...+..+... ...+++++|||+|++|+|+|..+.+.+.+|++++|.+
T Consensus       121 ~vViATG--s~~~~p~i~G~~~~~~-v~~~~~~~~~-~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~  190 (438)
T PRK07251        121 TIVINTG--AVSNVLPIPGLADSKH-VYDSTGIQSL-ETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS  190 (438)
T ss_pred             EEEEeCC--CCCCCCCCCCcCCCCc-EEchHHHhcc-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            9999999  7888899998754322 2222222222 2235899999999999999999999999999999987

>PRK14694 putative mercuric reductase; Provisional

Probab=99.91  E-value=5.4e-23  Score=171.92  Aligned_cols=218  Identities=20%  Similarity=0.260  Sum_probs=134.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .|||+||||||+|+++|..|.+.|.+|+|||+. .+||+|...        +|.|.+.++.+..........+. ..++.
T Consensus         6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~--------GciPsk~l~~~a~~~~~~~~~~~-~~g~~   75 (468)
T PRK14694          6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNI--------GCVPSKIMIRAAHIAHLRRESPF-DDGLS   75 (468)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecC--------CccccHHHHHHHHHHHHHhhccc-cCCcc
Confidence            489999999999999999999999999999996 699999754        77776655543322221111110 00110


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHH------------HHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCC
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNF------------AREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD  148 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~  148 (259)
                      ...          .   -+...++.++..+.            +.+. +++  +.. .+++.++   .+.|+|.+.++. 
T Consensus        76 ~~~----------~---~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~~-g~v~~id---~~~~~V~~~~g~-  135 (468)
T PRK14694         76 AQA----------P---VVDRSALLAQQQARVEELRESKYQSILRENAAIT--VLN-GEARFVD---ERTLTVTLNDGG-  135 (468)
T ss_pred             cCC----------C---ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeE--EEE-EEEEEec---CCEEEEEecCCC-
Confidence            000          0   01112333222222            1111 444  333 3566664   256888876642 


Q ss_pred             ceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEec
Q 024975          149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (259)
Q Consensus       149 ~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r  228 (259)
                       ...++||+||+|||  +.|+.|++||.+...  ..++..... ....+++++|||+|++|+|+|..|.+.+.+|+++.+
T Consensus       136 -~~~~~~d~lViATG--s~p~~p~i~G~~~~~--~~~~~~~~~-l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~  209 (468)
T PRK14694        136 -EQTVHFDRAFIGTG--ARPAEPPVPGLAETP--YLTSTSALE-LDHIPERLLVIGASVVALELAQAFARLGSRVTVLAR  209 (468)
T ss_pred             -eEEEECCEEEEeCC--CCCCCCCCCCCCCCc--eEcchhhhc-hhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC
Confidence             24799999999999  789999999976521  122111111 112358999999999999999999999999999987


Q ss_pred             CC-----CcccccCC---CCCCCce--EeeeeeEEee
Q 024975          229 SV-----ADETHEKQ---PGYDNMW--LHSMVRTKKC  255 (259)
Q Consensus       229 ~~-----~~~~~~~~---~~~~~~~--~~~~v~~~~~  255 (259)
                      ..     ++++.+.+   ++..++.  .++.|++++.
T Consensus       210 ~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~  246 (468)
T PRK14694        210 SRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDY  246 (468)
T ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEE
Confidence            53     22222222   2223444  4567777654

>PRK14727 putative mercuric reductase; Provisional

Probab=99.91  E-value=6.1e-23  Score=171.88  Aligned_cols=225  Identities=17%  Similarity=0.201  Sum_probs=132.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ++|++|||+||+|+++|..|.+.|.+|+++|+.+.+||+|...        +|.|.+.++....+.......+.  .++.
T Consensus        16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~--------GciPsk~l~~~a~~~~~~~~~~~--~g~~   85 (479)
T PRK14727         16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNV--------GCVPSKILIRAAQLAHQQRSNPF--DGVE   85 (479)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccc--------cccccHHHHHHHHHHHHHhhccc--cCcc
Confidence            5899999999999999999999999999999988899999865        77777665554332222211111  0110


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHH-----HHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYL-----QNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a  155 (259)
                      ... ...     .+...+.........+     ....+.. +++  +..+. +   ...+.+.+.|...++  ....+.|
T Consensus        86 ~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~G~-a---~f~~~~~v~v~~~~g--~~~~~~~  151 (479)
T PRK14727         86 AVA-PSI-----DRGLLLHQQQARVEELRHAKYQSILDGNPALT--LLKGY-A---RFKDGNTLVVRLHDG--GERVLAA  151 (479)
T ss_pred             cCC-Ccc-----CHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeE--EEEEE-E---EEecCCEEEEEeCCC--ceEEEEe
Confidence            000 000     0000000001111111     1112111 444  33332 2   222225566766443  2246999


Q ss_pred             CEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC-----
Q 024975          156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV-----  230 (259)
Q Consensus       156 d~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~-----  230 (259)
                      |+||+|||  +.|..|.++|.....  .......... ...+++++|||+|++|+|+|..|.+.+.+|+++.|..     
T Consensus       152 d~lViATG--s~p~~p~i~G~~~~~--~~~~~~~l~~-~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~  226 (479)
T PRK14727        152 DRCLIATG--STPTIPPIPGLMDTP--YWTSTEALFS-DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFRE  226 (479)
T ss_pred             CEEEEecC--CCCCCCCCCCcCccc--eecchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcc
Confidence            99999999  789999999875421  1111111111 1235899999999999999999999999999999864     


Q ss_pred             CcccccCC---CCCCCce--EeeeeeEEee
Q 024975          231 ADETHEKQ---PGYDNMW--LHSMVRTKKC  255 (259)
Q Consensus       231 ~~~~~~~~---~~~~~~~--~~~~v~~~~~  255 (259)
                      ++++.+.+   ++..++.  .++.|+.++.
T Consensus       227 d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~  256 (479)
T PRK14727        227 DPLLGETLTACFEKEGIEVLNNTQASLVEH  256 (479)
T ss_pred             hHHHHHHHHHHHHhCCCEEEcCcEEEEEEE
Confidence            23332222   2223444  4567776653

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.91  E-value=7.9e-23  Score=170.65  Aligned_cols=199  Identities=19%  Similarity=0.202  Sum_probs=119.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccc-cccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   80 (259)
                      .|||+|||+||+|+++|..++++|.+|+|+|+.+.+||+|...        +|.|.+.++.... +..+...... .++.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~--------gciPsK~l~~~~~~~~~~~~~~~~-~~gi   73 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNV--------GCMPSKALLHASELYEAASGGEFA-HLGI   73 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccC--------cccccHHHHHHhHHHHHHhhhhhh-hcCc
Confidence            4899999999999999999999999999999877899999876        7888776655432 2211110000 0000


Q ss_pred             cCCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975           81 QAYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad  156 (259)
                      ....   .    ..+...+-..    ..+...+....+..+++  +..+. . .+  .+.+.+.|...++  +...+.||
T Consensus        74 ~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~-a-~~--~~~~~v~v~~~~g--~~~~~~~d  138 (466)
T PRK06115         74 EVKP---T----LNLAQMMKQKDESVEALTKGVEFLFRKNKVD--WIKGW-G-RL--DGVGKVVVKAEDG--SETQLEAK  138 (466)
T ss_pred             cccC---c----cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEE-E-EE--ccCCEEEEEcCCC--ceEEEEeC
Confidence            0000   0    0000000000    11112233333444666  55443 1 22  2224455554432  22469999


Q ss_pred             EEEEccCCCCCCccCCCCCCCCCCCc-eEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          157 AVVVCNGHFSVPRLAQVPGIDSWPGK-QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       157 ~VIlAtG~~s~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +||+|||  +.|.  .+||... .+. ...+..... ....+++++|||+|++|+|+|..+.+.+.+|++++|.+
T Consensus       139 ~lVIATG--s~p~--~ipg~~~-~~~~~~~~~~~~~-~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~  207 (466)
T PRK06115        139 DIVIATG--SEPT--PLPGVTI-DNQRIIDSTGALS-LPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD  207 (466)
T ss_pred             EEEEeCC--CCCC--CCCCCCC-CCCeEECHHHHhC-CccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            9999999  5553  3455432 222 222222221 12245899999999999999999999999999999887

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.90  E-value=1.1e-23  Score=176.15  Aligned_cols=213  Identities=17%  Similarity=0.183  Sum_probs=125.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +|||+||||||+|+++|..|.+.|.+|+|+|+ ..+||+|...        +|.|.+.++..........+.+       
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~--------gc~psk~l~~~~~~~~~~~~~~-------   66 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNV--------GCIPSKALIAAAEAFHEAKHAE-------   66 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceecc--------ceeeHHHHHHHHHHHHHHHHHH-------
Confidence            58999999999999999999999999999999 6799999865        5665544333221111111110       


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH------------hCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE------------FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                      .+....        ........++.+++.+....            .+++  +.. .++..+     +.+.+.+ ++   
T Consensus        67 ~~gi~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~~~~~-----~~~~v~v-~~---  126 (460)
T PRK06292         67 EFGIHA--------DGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKID--KIK-GTARFV-----DPNTVEV-NG---  126 (460)
T ss_pred             hcCCCc--------CCCccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCE--EEE-EEEEEc-----cCCEEEE-Cc---
Confidence            010000        00122335555544443332            2333  222 122221     1233444 22   


Q ss_pred             eEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~  229 (259)
                       ..+.+|+||+|||.  .  .|.+||.....+...............+++++|||+|.+|+|+|..|.+.+.+|++++|.
T Consensus       127 -~~~~~d~lIiATGs--~--~p~ipg~~~~~~~~~~~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~  201 (460)
T PRK06292        127 -ERIEAKNIVIATGS--R--VPPIPGVWLILGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERG  201 (460)
T ss_pred             -EEEEeCEEEEeCCC--C--CCCCCCCcccCCCcEECchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence             37999999999994  4  455666543222222222211122234689999999999999999999999999999998


Q ss_pred             C------Ccccc----cCCCCCCCceEeeeeeEEee
Q 024975          230 V------ADETH----EKQPGYDNMWLHSMVRTKKC  255 (259)
Q Consensus       230 ~------~~~~~----~~~~~~~~~~~~~~v~~~~~  255 (259)
                      +      ++++.    +.+.+..+++.++.|++++.
T Consensus       202 ~~~l~~~d~~~~~~~~~~l~~~I~i~~~~~v~~i~~  237 (460)
T PRK06292        202 DRILPLEDPEVSKQAQKILSKEFKIKLGAKVTSVEK  237 (460)
T ss_pred             CCcCcchhHHHHHHHHHHHhhccEEEcCCEEEEEEE
Confidence            7      22222    22222244445667777654

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.90  E-value=3.8e-23  Score=173.12  Aligned_cols=200  Identities=17%  Similarity=0.214  Sum_probs=122.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (259)
                      .||++||||||+|+++|..|+++|.+|+|+|+. .+||+|...        +|.|++.++... .+..+.. ........
T Consensus         4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~--------gciPsk~l~~~a~~~~~~~~-~~~~g~~~   73 (472)
T PRK05976          4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHK--------GCIPSKALLHSAEVFQTAKK-ASPFGISV   73 (472)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcC--------CcCchHHHHHHHHHHHHHHH-HHhcCccC
Confidence            589999999999999999999999999999995 789999876        777776655432 2222221 11100000


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHH----HHHHHHHHhCCceeEEeceeEEEEEEe----CCCcEEEEEEecCCceEE
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLR----YLQNFAREFGVDQVVRLHTEVLNARLV----ESNKWKVKSRKKDDVVEE  152 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~v~~~~~v~~i~~~----~~~~~~v~~~~g~~~~~~  152 (259)
                      ...+.        .+....-..+++..    .....+++.+++  ++.+ +++.+...    +++.+.|.+.++  ....
T Consensus        74 ~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g-~a~~i~~~~~~~~~~~~~v~~~~g--~~~~  140 (472)
T PRK05976         74 SGPAL--------DFAKVQERKDGIVDRLTKGVAALLKKGKID--VFHG-IGRILGPSIFSPMPGTVSVETETG--ENEM  140 (472)
T ss_pred             CCCcc--------CHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEeCCCCCcCCceEEEEEeCCC--ceEE
Confidence            00000        00000000122222    233444555777  5554 55555432    012566666543  2247


Q ss_pred             EEeCEEEEccCCCCCCccCCCCCCCCCCCc-eEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          153 ETFDAVVVCNGHFSVPRLAQVPGIDSWPGK-QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       153 ~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +.||+||+|||  +.|+.+  |+.. +.+. ...+...... ...+++++|||+|++|+|+|..|.+.+.+|++++|.+
T Consensus       141 ~~~d~lViATG--s~p~~~--p~~~-~~~~~~~~~~~~~~~-~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~  213 (472)
T PRK05976        141 IIPENLLIATG--SRPVEL--PGLP-FDGEYVISSDEALSL-ETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD  213 (472)
T ss_pred             EEcCEEEEeCC--CCCCCC--CCCC-CCCceEEcchHhhCc-cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence            99999999999  666543  2222 1122 2222222221 1235899999999999999999999999999999987

>PRK13748 putative mercuric reductase; Provisional

Probab=99.90  E-value=6.4e-23  Score=175.50  Aligned_cols=217  Identities=20%  Similarity=0.278  Sum_probs=132.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      |||+||||||+|+++|..|++.|.+|+|+|++ .+||+|...        +|.|.+.++.+..........+.+ .++  
T Consensus        99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~--------gciPsk~l~~~~~~~~~~~~~~~~-~g~--  166 (561)
T PRK13748         99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNV--------GCVPSKIMIRAAHIAHLRRESPFD-GGI--  166 (561)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecccc--------CccccHHHHHHHHHHHHHhccccc-CCc--
Confidence            89999999999999999999999999999997 799999865        777766555443322221111100 011  


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHH------------HHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQ------------NFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~------------~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                       +..        ...  .....+.+...            ..+... +++  +..+ ++..+.   .+.+.|...++  .
T Consensus       167 -~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~~~---~~~~~v~~~~g--~  227 (561)
T PRK13748        167 -AAT--------VPT--IDRSRLLAQQQARVDELRHAKYEGILDGNPAIT--VLHG-EARFKD---DQTLIVRLNDG--G  227 (561)
T ss_pred             -cCC--------CCc--cCHHHHHHHHHHHHHHHhcccHHHHHhccCCeE--EEEE-EEEEec---CCEEEEEeCCC--c
Confidence             000        000  01122222221            112222 444  4433 444332   24566665443  2


Q ss_pred             eEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~  229 (259)
                      ...+.||+||+|||  +.|..|.++|.+...  ........ .....+++++|||+|++|+|+|..|.+.+.+|+++.|.
T Consensus       228 ~~~~~~d~lviAtG--s~p~~p~i~g~~~~~--~~~~~~~~-~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~  302 (561)
T PRK13748        228 ERVVAFDRCLIATG--ASPAVPPIPGLKETP--YWTSTEAL-VSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS  302 (561)
T ss_pred             eEEEEcCEEEEcCC--CCCCCCCCCCCCccc--eEccHHHh-hcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence            24699999999999  789999999876421  11111111 11223589999999999999999999999999999986


Q ss_pred             C-----CcccccCC---CCCCCce--EeeeeeEEee
Q 024975          230 V-----ADETHEKQ---PGYDNMW--LHSMVRTKKC  255 (259)
Q Consensus       230 ~-----~~~~~~~~---~~~~~~~--~~~~v~~~~~  255 (259)
                      .     ++++.+.+   ++..++.  .++.|++++.
T Consensus       303 ~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~  338 (561)
T PRK13748        303 TLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAH  338 (561)
T ss_pred             ccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe
Confidence            4     23333222   2223444  4567777653

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.90  E-value=3.9e-23  Score=171.79  Aligned_cols=209  Identities=21%  Similarity=0.271  Sum_probs=130.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC-CcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      .|||+||||||+|+++|.+|+++|.+|+|+|+.+ .+||+|...        +|.|.+.++.....              
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~--------gcip~k~l~~~~~~--------------   60 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINI--------GCIPTKTLVHDAQQ--------------   60 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeec--------cccchHHHHHHhcc--------------
Confidence            5899999999999999999999999999999976 479999754        44443322221100              


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHH-----HHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQ-----NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a  155 (259)
                       ...|.          ......+.+..++.     +.....+++  +..+ ++..+.   .+.+.|...++.   ..+.+
T Consensus        61 -~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~i~---~~~~~v~~~~g~---~~~~~  120 (441)
T PRK08010         61 -HTDFV----------RAIQRKNEVVNFLRNKNFHNLADMPNID--VIDG-QAEFIN---NHSLRVHRPEGN---LEIHG  120 (441)
T ss_pred             -CCCHH----------HHHHHHHHHHHHHHHhHHHHHhhcCCcE--EEEE-EEEEec---CCEEEEEeCCCe---EEEEe
Confidence             00000          00000122223332     122222565  4443 444443   245666654432   35899


Q ss_pred             CEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC-----
Q 024975          156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV-----  230 (259)
Q Consensus       156 d~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~-----  230 (259)
                      |+||+|||  +.|..|.+||...+.+ ...+...... ...+++++|||+|++|+|+|..|.+.+.+|++++|.+     
T Consensus       121 d~lviATG--s~p~~p~i~G~~~~~~-v~~~~~~~~~-~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  196 (441)
T PRK08010        121 EKIFINTG--AQTVVPPIPGITTTPG-VYDSTGLLNL-KELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR  196 (441)
T ss_pred             CEEEEcCC--CcCCCCCCCCccCCCC-EEChhHhhcc-cccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence            99999999  7888899999765433 2222222222 2345799999999999999999999999999999987     


Q ss_pred             -CcccccCC---CCCCCc--eEeeeeeEEeec
Q 024975          231 -ADETHEKQ---PGYDNM--WLHSMVRTKKCS  256 (259)
Q Consensus       231 -~~~~~~~~---~~~~~~--~~~~~v~~~~~~  256 (259)
                       ++++.+.+   ++..++  +.++.|++++..
T Consensus       197 ~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~  228 (441)
T PRK08010        197 EDRDIADNIATILRDQGVDIILNAHVERISHH  228 (441)
T ss_pred             cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc
Confidence             12222211   222344  445777777653

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.3e-22  Score=145.53  Aligned_cols=191  Identities=18%  Similarity=0.272  Sum_probs=148.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC----CcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE----QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~----~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (259)
                      .+|+|||+||++..+|.++++..++.++||-.-    .+||....+.                              +..
T Consensus         9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT------------------------------~ve   58 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT------------------------------DVE   58 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee------------------------------ccc
Confidence            479999999999999999999999999999742    1244443321                              111


Q ss_pred             eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                      .|+.+|.-.             ...++...+++...++|.+   ++..+|.+++... ..|.+.++..     .+.+|.|
T Consensus        59 NfPGFPdgi-------------~G~~l~d~mrkqs~r~Gt~---i~tEtVskv~~ss-kpF~l~td~~-----~v~~~av  116 (322)
T KOG0404|consen   59 NFPGFPDGI-------------TGPELMDKMRKQSERFGTE---IITETVSKVDLSS-KPFKLWTDAR-----PVTADAV  116 (322)
T ss_pred             cCCCCCccc-------------ccHHHHHHHHHHHHhhcce---eeeeehhhccccC-CCeEEEecCC-----ceeeeeE
Confidence            122222111             2378999999999999998   4556899999887 8899998763     6999999


Q ss_pred             EEccCCCCCCccCCCCCC--CCCCCceEEcccCCCCCC--CCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC----
Q 024975          159 VVCNGHFSVPRLAQVPGI--DSWPGKQMHSHNYRIPNP--FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV----  230 (259)
Q Consensus       159 IlAtG~~s~~~~~~~~g~--~~~~~~~~~~~~~~~~~~--~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~----  230 (259)
                      |+|||  ...+...+||.  ..|+......+..++...  +.++..+|||+|.+|+|-|..|.+.+..|++++|++    
T Consensus       117 I~atG--AsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA  194 (322)
T KOG0404|consen  117 ILATG--ASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA  194 (322)
T ss_pred             EEecc--cceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH
Confidence            99999  55666677765  337888888887777644  788999999999999999999999999999999999    


Q ss_pred             CcccccCCCCCCCceEe
Q 024975          231 ADETHEKQPGYDNMWLH  247 (259)
Q Consensus       231 ~~~~~~~~~~~~~~~~~  247 (259)
                      ...+.++..++++|...
T Consensus       195 s~~Mq~ra~~npnI~v~  211 (322)
T KOG0404|consen  195 SKIMQQRAEKNPNIEVL  211 (322)
T ss_pred             HHHHHHHHhcCCCeEEE
Confidence            45677777777777754

>PLN02546 glutathione reductase

Probab=99.90  E-value=2.2e-23  Score=175.68  Aligned_cols=191  Identities=18%  Similarity=0.204  Sum_probs=126.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEee---------CCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK---------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN   72 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~---------~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (259)
                      .|||+|||+||+|+.+|..|+++|.+|+|+|+         ...+||+|...        +|.|.+.++...........
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~--------GCiPsK~l~~aa~~~~~~~~  150 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLR--------GCVPKKLLVYASKYSHEFEE  150 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCc--------chHHHHHHHHHHHHHHHHHh
Confidence            38999999999999999999999999999996         24589999876        88888776664433221111


Q ss_pred             cccccceec---CCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEe
Q 024975           73 LPRELMGFQ---AYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK  145 (259)
Q Consensus        73 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~  145 (259)
                      .........   ...|.          ......    .++..++...+.+.+++  ++.+ +++.+..   .  .|.++ 
T Consensus       151 ~~~~g~~~~~~~~~d~~----------~~~~~k~~~~~~l~~~~~~~l~~~gV~--~i~G-~a~~vd~---~--~V~v~-  211 (558)
T PLN02546        151 SRGFGWKYETEPKHDWN----------TLIANKNAELQRLTGIYKNILKNAGVT--LIEG-RGKIVDP---H--TVDVD-  211 (558)
T ss_pred             hhhcCcccCCCCCCCHH----------HHHHHHHHHHHHHHHHHHHHHHhCCcE--EEEe-EEEEccC---C--EEEEC-
Confidence            111111000   00100          000000    33445566666666777  5543 4444431   2  34442 


Q ss_pred             cCCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEE
Q 024975          146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHI  225 (259)
Q Consensus       146 g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~  225 (259)
                      +    ..+.||+||+|||  +.|..|.+||....    ....... .....+++++|||+|++|+|+|..|.+.+.+|++
T Consensus       212 G----~~~~~D~LVIATG--s~p~~P~IpG~~~v----~~~~~~l-~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtl  280 (558)
T PLN02546        212 G----KLYTARNILIAVG--GRPFIPDIPGIEHA----IDSDAAL-DLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHV  280 (558)
T ss_pred             C----EEEECCEEEEeCC--CCCCCCCCCChhhc----cCHHHHH-hccccCCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            2    3689999999999  88999999986531    1111111 1123468999999999999999999999999999


Q ss_pred             EecCC
Q 024975          226 ASRSV  230 (259)
Q Consensus       226 ~~r~~  230 (259)
                      +.|.+
T Consensus       281 v~~~~  285 (558)
T PLN02546        281 FIRQK  285 (558)
T ss_pred             EEecc
Confidence            99987

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.89  E-value=3.2e-22  Score=167.18  Aligned_cols=195  Identities=18%  Similarity=0.249  Sum_probs=121.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC--------CcCceeeeCCCCCCCCCCCCCCCCCccccccccceecc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL   73 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~--------~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (259)
                      .||++|||+||+|+.+|..+++.|.+|+++|+..        .+||+|...        +|.|++.++.+........+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~--------GCiPsK~l~~~a~~~~~~~~~   73 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNV--------GCIPKKLMHQAALLGQALKDS   73 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceecccccccc--------CcCchhHHHHHHHHHHHHhhh
Confidence            5899999999999999999999999999999731        478998876        888888766654322111111


Q ss_pred             ccccceecCCCCCccCCCCCCCCCCCC----CHH----HHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEe
Q 024975           74 PRELMGFQAYPFVARNYEGSVDLRRYP----GHE----EVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK  145 (259)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~  145 (259)
                      ..  +++.   +..      .....|+    ...    .+.......++..+++  +..+ ...-+   +.+.+.|...+
T Consensus        74 ~~--~g~~---~~~------~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~--~i~G-~a~f~---~~~~v~v~~~~  136 (484)
T TIGR01438        74 RN--YGWN---VEE------TVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVN--YENA-YAEFV---DKHRIKATNKK  136 (484)
T ss_pred             hh--cCcc---cCC------CcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EEEE-EEEEc---CCCEEEEeccC
Confidence            11  1110   000      0000110    001    1222223334445666  4433 32222   21334443222


Q ss_pred             cCCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEE
Q 024975          146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHI  225 (259)
Q Consensus       146 g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~  225 (259)
                        +....+.||+||+|||  +.|..|.+||...+   ...+...... ...+++++|||+|++|+|+|..|.+.+.+|++
T Consensus       137 --g~~~~~~~d~lVIATG--s~p~~p~ipG~~~~---~~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtl  208 (484)
T TIGR01438       137 --GKEKIYSAERFLIATG--ERPRYPGIPGAKEL---CITSDDLFSL-PYCPGKTLVVGASYVALECAGFLAGIGLDVTV  208 (484)
T ss_pred             --CCceEEEeCEEEEecC--CCCCCCCCCCccce---eecHHHhhcc-cccCCCEEEECCCHHHHHHHHHHHHhCCcEEE
Confidence              2234799999999999  78888999887442   1222112111 12346899999999999999999999999999


Q ss_pred             EecC
Q 024975          226 ASRS  229 (259)
Q Consensus       226 ~~r~  229 (259)
                      +.|.
T Consensus       209 i~~~  212 (484)
T TIGR01438       209 MVRS  212 (484)
T ss_pred             EEec
Confidence            9985

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.89  E-value=4.7e-23  Score=171.80  Aligned_cols=202  Identities=17%  Similarity=0.221  Sum_probs=120.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc-CCcEEEEeeC--------CCcCceeeeCCCCCCCCCCCCCCCCCccccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKG--------EQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN   72 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~-g~~v~v~e~~--------~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (259)
                      .||++|||+||+|..+|..++++ |.+|+|+|+.        ..+||+|...        +|.|.+.++.+.........
T Consensus         3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~--------GCiPsK~l~~~a~~~~~~~~   74 (486)
T TIGR01423         3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNV--------GCVPKKLMVTGAQYMDTLRE   74 (486)
T ss_pred             ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCc--------CCccHHHHHHHHHHHHHHHH
Confidence            58999999999999999999997 8999999984        4699999877        89998887765532222111


Q ss_pred             cccccceecCCCCCccCCCCCCCCCCCCCHHHHH----HHHHHHHHH-hCCceeEEeceeEEEEEEeCCCcEEEEEEe-c
Q 024975           73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVL----RYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRK-K  146 (259)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g  146 (259)
                      ...  +++........    ..+....-..+.+.    ..+.+.++. .+++  +..+. ..-   .+.+...|.... +
T Consensus        75 ~~~--~gi~~~~~~~~----~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~--~i~G~-a~f---~~~~~v~V~~~~~~  142 (486)
T TIGR01423        75 SAG--FGWEFDRSSVK----ANWKALIAAKNKAVLDINKSYEGMFADTEGLT--FFLGW-GAL---EDKNVVLVRESADP  142 (486)
T ss_pred             hhc--cCeeccCCccc----cCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeE--EEEEE-EEE---ccCCEEEEeeccCC
Confidence            111  11100000000    00000000112222    222223333 2555  44443 221   111333443211 1


Q ss_pred             CC-ceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcc---cCe
Q 024975          147 DD-VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGF---AKE  222 (259)
Q Consensus       147 ~~-~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~---~~~  222 (259)
                      ++ ....+.||+||+|||  +.|..|.++|.+..    ..+..... ....+++++|||+|++|+|+|..+..+   |.+
T Consensus       143 ~~~~~~~~~~d~lIIATG--s~p~~p~i~G~~~~----~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~  215 (486)
T TIGR01423       143 KSAVKERLQAEHILLATG--SWPQMLGIPGIEHC----ISSNEAFY-LDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGK  215 (486)
T ss_pred             CCCcceEEECCEEEEecC--CCCCCCCCCChhhe----echhhhhc-cccCCCeEEEECCCHHHHHHHHHHHHhccCCCe
Confidence            11 124799999999999  78888988886531    11111111 112458999999999999999877554   889


Q ss_pred             EEEEecCC
Q 024975          223 VHIASRSV  230 (259)
Q Consensus       223 v~~~~r~~  230 (259)
                      |++++|.+
T Consensus       216 Vtli~~~~  223 (486)
T TIGR01423       216 VTLCYRNN  223 (486)
T ss_pred             EEEEecCC
Confidence            99999988

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.89  E-value=3.4e-22  Score=167.28  Aligned_cols=195  Identities=19%  Similarity=0.262  Sum_probs=118.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (259)
                      +|||+||||||+|+++|.+|.++|.+|+|+|+ +.+||+|...        +|.|.+.++... .+..+.. ........
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~--------gc~Psk~l~~~~~~~~~~~~-~~~~g~~~   70 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNV--------GCIPTKALLHSAEVYDEIKH-AKDYGIEV   70 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeec--------CccchHHHHHHhhHHHHHHH-HHhcCCCC
Confidence            48999999999999999999999999999999 7899999765        555554333322 2222211 00000000


Q ss_pred             c--CCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEE
Q 024975           81 Q--AYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET  154 (259)
Q Consensus        81 ~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~  154 (259)
                      .  .+++..          .....    ..+...+.+..++.+++  +..+ ++..+.   .+.+.+...++.   ..+.
T Consensus        71 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~~~---~~~~~v~~~~g~---~~~~  131 (461)
T TIGR01350        71 ENVSVDWEK----------MQKRKNKVVKKLVGGVKGLLKKNKVT--VIKG-EAKFLD---PGTVLVTGENGE---ETLT  131 (461)
T ss_pred             CCCcCCHHH----------HHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEcc---CCEEEEecCCCc---EEEE
Confidence            0  000000          00000    11222334445556776  5554 333322   244555554332   4799


Q ss_pred             eCEEEEccCCCCCCccCCCC-CCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          155 FDAVVVCNGHFSVPRLAQVP-GIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       155 ad~VIlAtG~~s~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ||+||+|||  +.|+.|+++ +..   +...+...........+++++|||+|.+|+|+|..|.+.+.+|+++.|.+
T Consensus       132 ~d~lVlAtG--~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~  203 (461)
T TIGR01350       132 AKNIIIATG--SRPRSLPGPFDFD---GEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD  203 (461)
T ss_pred             eCEEEEcCC--CCCCCCCCCCCCC---CceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence            999999999  677777665 221   22222222111222235899999999999999999999999999999987

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.89  E-value=2.9e-22  Score=167.77  Aligned_cols=224  Identities=17%  Similarity=0.194  Sum_probs=131.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEee------CCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceeccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK------GEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLP   74 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~------~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   74 (259)
                      .||++|||+||+|+++|.+|.+.|.+|+|+|+      ...+||+|...        +|.|.+.++... .+..+.....
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~--------gc~P~k~l~~~a~~~~~~~~~~~   75 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNV--------GCIPSKALLASSEEFENAGHHFA   75 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccc--------cccHHHHHHHHHHHHHHHHhhHH
Confidence            58999999999999999999999999999998      35688888654        555543333221 1111111000


Q ss_pred             cccceecCCCCCccCCCCCCCCCCCC---C-HH----HHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec
Q 024975           75 RELMGFQAYPFVARNYEGSVDLRRYP---G-HE----EVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK  146 (259)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~----~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g  146 (259)
                      .........            ...|+   . ..    .+...+....+..+++  +.. .++..+...+ +.++|.+..+
T Consensus        76 ~~G~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~~~~~~~~~-~~~~v~v~~~  139 (475)
T PRK06327         76 DHGIHVDGV------------KIDVAKMIARKDKVVKKMTGGIEGLFKKNKIT--VLK-GRGSFVGKTD-AGYEIKVTGE  139 (475)
T ss_pred             hcCccCCCC------------ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-EEEEEecCCC-CCCEEEEecC
Confidence            000000000            00111   0 01    1222334444455776  554 3555555443 5677777643


Q ss_pred             CCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEE
Q 024975          147 DDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIA  226 (259)
Q Consensus       147 ~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~  226 (259)
                      ++  ..++||+||+|||  +.|+.++  +.. +.+...+...........+++++|+|+|.+|+|+|..|.+.+.+|+++
T Consensus       140 ~~--~~~~~d~lViATG--s~p~~~p--~~~-~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli  212 (475)
T PRK06327        140 DE--TVITAKHVIIATG--SEPRHLP--GVP-FDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTIL  212 (475)
T ss_pred             CC--eEEEeCEEEEeCC--CCCCCCC--CCC-CCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            21  3799999999999  6665432  221 122223322221222224589999999999999999999999999999


Q ss_pred             ecCCC------cccc----cCCCC-CCCceEeeeeeEEeec
Q 024975          227 SRSVA------DETH----EKQPG-YDNMWLHSMVRTKKCS  256 (259)
Q Consensus       227 ~r~~~------~~~~----~~~~~-~~~~~~~~~v~~~~~~  256 (259)
                      +|.+.      +++.    +.+.. ...+..++.|++++..
T Consensus       213 ~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~  253 (475)
T PRK06327        213 EALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTG  253 (475)
T ss_pred             eCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEc
Confidence            99872      2222    22222 2344445677777643

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.89  E-value=7.9e-23  Score=171.55  Aligned_cols=194  Identities=19%  Similarity=0.316  Sum_probs=116.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC--------CcCceeeeCCCCCCCCCCCCCCCCCccccccc-cceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYK-SLRVN   72 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~--------~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   72 (259)
                      +|||+||||||+|+++|..|.++|.+|+|+|+..        .+||+|...        +|.|.+.++...... .+...
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~--------gciPsK~l~~~a~~~~~~~~~   76 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNV--------GCVPKKLMHYAANIGSIFHHD   76 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccc--------cccchHHHHHHHHHHHHHHhH
Confidence            4899999999999999999999999999999732        489998765        666655433322111 11100


Q ss_pred             cccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEecee---EEEE----EEeCCCcEEEEEEe
Q 024975           73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTE---VLNA----RLVESNKWKVKSRK  145 (259)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~---v~~i----~~~~~~~~~v~~~~  145 (259)
                      ..  .+++.. +            . -....++.+++...+.+++..  +....+   |+-+    ...  +.++|.+.+
T Consensus        77 ~~--~~g~~~-~------------~-~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~v~~i~g~a~~~--~~~~v~v~~  136 (499)
T PTZ00052         77 SQ--MYGWKT-S------------S-SFNWGKLVTTVQNHIRSLNFS--YRTGLRSSKVEYINGLAKLK--DEHTVSYGD  136 (499)
T ss_pred             Hh--cCCCCC-C------------C-CcCHHHHHHHHHHHHHHhhHH--HHHHhhhcCcEEEEEEEEEc--cCCEEEEee
Confidence            00  001100 0            0 011255555555544433222  111111   1111    111  234455443


Q ss_pred             cCCceEEEEeCEEEEccCCCCCCccCC-CCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEE
Q 024975          146 KDDVVEEETFDAVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVH  224 (259)
Q Consensus       146 g~~~~~~~~ad~VIlAtG~~s~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~  224 (259)
                      . +....++||+||+|||  +.|..|. +||...+   ...+...... ...+++++|||+|++|+|+|..|.+.+.+||
T Consensus       137 ~-~~~~~i~~d~lIIATG--s~p~~p~~i~G~~~~---~~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vt  209 (499)
T PTZ00052        137 N-SQEETITAKYILIATG--GRPSIPEDVPGAKEY---SITSDDIFSL-SKDPGKTLIVGASYIGLETAGFLNELGFDVT  209 (499)
T ss_pred             C-CCceEEECCEEEEecC--CCCCCCCCCCCccce---eecHHHHhhh-hcCCCeEEEECCCHHHHHHHHHHHHcCCcEE
Confidence            2 1224799999999999  7888774 7876542   1222222111 1234789999999999999999999999999


Q ss_pred             EEecCC
Q 024975          225 IASRSV  230 (259)
Q Consensus       225 ~~~r~~  230 (259)
                      ++.|..
T Consensus       210 li~~~~  215 (499)
T PTZ00052        210 VAVRSI  215 (499)
T ss_pred             EEEcCc
Confidence            999753

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.88  E-value=2.2e-22  Score=167.86  Aligned_cols=217  Identities=14%  Similarity=0.184  Sum_probs=128.9

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY   83 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (259)
                      +|+|||+||+|+++|..|++.|.+|+|+|++ .+||+|...        +|.|.+.++..................+...
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~--------gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~   72 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNE--------GCMPTKSLLESAEVHDKVKKANHFGITLPNG   72 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCC--------ccccchHHHHHHHHHHHHHHHHhcCccccCC
Confidence            8999999999999999999999999999996 488998765        7888776655432211111111111100000


Q ss_pred             CCCccCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEE
Q 024975           84 PFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE  152 (259)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~  152 (259)
                      .             .......+..           .....+...+++  +..+ ++..+.   .+.+.|..+++.   ..
T Consensus        73 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~a~~~~---~~~v~v~~~~~~---~~  130 (458)
T PRK06912         73 S-------------ISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIK--VIQG-KASFET---DHRVRVEYGDKE---EV  130 (458)
T ss_pred             C-------------CccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EEEE-EEEEcc---CCEEEEeeCCCc---EE
Confidence            0             0001122221           222333344565  4333 333332   244555543322   46


Q ss_pred             EEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC--
Q 024975          153 ETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV--  230 (259)
Q Consensus       153 ~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~--  230 (259)
                      +.||+||+|||  +.|+.|++++....  ...++... ......+++++|||+|++|+|+|..+.+.+.+|++++|.+  
T Consensus       131 ~~~d~lviATG--s~p~~~p~~~~~~~--~v~~~~~~-~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l  205 (458)
T PRK06912        131 VDAEQFIIAAG--SEPTELPFAPFDGK--WIINSKHA-MSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL  205 (458)
T ss_pred             EECCEEEEeCC--CCCCCCCCCCCCCC--eEEcchHH-hCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            99999999999  67776666654321  12222221 1222235789999999999999999999999999999987  


Q ss_pred             ----Cccccc----CCCC-CCCceEeeeeeEEeec
Q 024975          231 ----ADETHE----KQPG-YDNMWLHSMVRTKKCS  256 (259)
Q Consensus       231 ----~~~~~~----~~~~-~~~~~~~~~v~~~~~~  256 (259)
                          ++++.+    .+.+ ...+..++.|++++..
T Consensus       206 l~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~  240 (458)
T PRK06912        206 LPGEDEDIAHILREKLENDGVKIFTGAALKGLNSY  240 (458)
T ss_pred             CccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEc
Confidence                222222    2222 2344445677777543

>PRK07846 mycothione reductase; Reviewed

Probab=99.88  E-value=3.1e-22  Score=166.18  Aligned_cols=212  Identities=16%  Similarity=0.167  Sum_probs=129.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .||++|||+||+|..+|..  +.|.+|+|+|+ +.+||+|...        +|.|++.++.+..................
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~--------GCiPsK~l~~~a~~~~~~~~~~~~g~~~~   69 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNV--------GCIPTKMFVYAADVARTIREAARLGVDAE   69 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCc--------CcchhHHHHHHHHHHHHHHHHHhCCccCC
Confidence            4899999999999998876  46999999998 4689999876        88888876665432221111111110000


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHH-------------HHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCC
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNF-------------AREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD  148 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~  148 (259)
                      .            ..   ....++.++....             ++..+++  +..+. +..+     +..+|.+.++. 
T Consensus        70 ~------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~-a~~~-----~~~~V~v~~g~-  125 (451)
T PRK07846         70 L------------DG---VRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNID--VYRGH-ARFI-----GPKTLRTGDGE-  125 (451)
T ss_pred             C------------Cc---CCHHHHHHHHHHHHHHHhccchhhhhhhhCCcE--EEEEE-EEEe-----cCCEEEECCCC-
Confidence            0            00   0112222222221             2334555  44432 2222     22455555443 


Q ss_pred             ceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEec
Q 024975          149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (259)
Q Consensus       149 ~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r  228 (259)
                         .++||+||+|||  +.|+.|.+++....   ..+...........+++++|||+|++|+|+|..|.+.|.+|+++.|
T Consensus       126 ---~~~~d~lViATG--s~p~~p~i~g~~~~---~~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~  197 (451)
T PRK07846        126 ---EITADQVVIAAG--SRPVIPPVIADSGV---RYHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNR  197 (451)
T ss_pred             ---EEEeCEEEEcCC--CCCCCCCCCCcCCc---cEEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEc
Confidence               699999999999  78999988885431   1222111111122358999999999999999999999999999999


Q ss_pred             CC------CcccccCC----CCCCCceEeeeeeEEeec
Q 024975          229 SV------ADETHEKQ----PGYDNMWLHSMVRTKKCS  256 (259)
Q Consensus       229 ~~------~~~~~~~~----~~~~~~~~~~~v~~~~~~  256 (259)
                      ++      ++++.+.+    ....+++.++.|++++..
T Consensus       198 ~~~ll~~~d~~~~~~l~~l~~~~v~i~~~~~v~~i~~~  235 (451)
T PRK07846        198 SGRLLRHLDDDISERFTELASKRWDVRLGRNVVGVSQD  235 (451)
T ss_pred             CCccccccCHHHHHHHHHHHhcCeEEEeCCEEEEEEEc
Confidence            87      23322221    222445556777777643

>PRK12831 putative oxidoreductase; Provisional

Probab=99.88  E-value=6.8e-22  Score=164.38  Aligned_cols=164  Identities=27%  Similarity=0.434  Sum_probs=114.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+||+||||||+|+++|..|++.|++|+|+|+.+.+||.+.+.         .                          .
T Consensus       140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------i--------------------------p  184 (464)
T PRK12831        140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG---------I--------------------------P  184 (464)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec---------C--------------------------C
Confidence            4799999999999999999999999999999998888888641         0                          0


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .+.              .+ ..++..+..+.+.+.+++  +++++.+..         .+..++..   ..+.||.||+|
T Consensus       185 ~~~--------------l~-~~~~~~~~~~~~~~~gv~--i~~~~~v~~---------~v~~~~~~---~~~~~d~viiA  235 (464)
T PRK12831        185 EFR--------------LP-KETVVKKEIENIKKLGVK--IETNVVVGK---------TVTIDELL---EEEGFDAVFIG  235 (464)
T ss_pred             Ccc--------------CC-ccHHHHHHHHHHHHcCCE--EEcCCEECC---------cCCHHHHH---hccCCCEEEEe
Confidence            000              01 133555556667778888  888875521         11112111   13569999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCC-------------CCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEec
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR-------------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~-------------~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r  228 (259)
                      ||+ ..|+.+.+||.+. .+ ++....+.             ......+++|+|||+|++|+|+|..+.+.|.+|++++|
T Consensus       236 tGa-~~~~~l~ipG~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r  312 (464)
T PRK12831        236 SGA-GLPKFMGIPGENL-NG-VFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYR  312 (464)
T ss_pred             CCC-CCCCCCCCCCcCC-cC-cEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEee
Confidence            995 2577888888653 12 11111111             11224578999999999999999999999999999999


Q ss_pred             CCCc
Q 024975          229 SVAD  232 (259)
Q Consensus       229 ~~~~  232 (259)
                      ++..
T Consensus       313 ~~~~  316 (464)
T PRK12831        313 RSEE  316 (464)
T ss_pred             cCcc
Confidence            8743

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.88  E-value=1.8e-21  Score=162.75  Aligned_cols=216  Identities=17%  Similarity=0.181  Sum_probs=123.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (259)
                      +|||+||||||+|+++|.+|++.|.+|+|+|++ .+||+|...        +|.|.+.++... .+..+.......  +.
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~--------gciPsk~l~~~~~~~~~~~~~~~~~--gi   72 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV--------GCIPSKALLRNAELAHIFTKEAKTF--GI   72 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC--------CccccHHHHhhHHHHHHHHHHHHhc--CC
Confidence            489999999999999999999999999999994 689999875        666665544332 222222111110  00


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHH-----------HHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQ-----------NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                      ..              ........+.....           ...+..+++  ...+ +..-   .+.+.+.+...+  +.
T Consensus        73 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~g-~~~~---~~~~~v~v~~~~--g~  130 (466)
T PRK07818         73 SG--------------EVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKIT--EIHG-YGTF---TDANTLEVDLND--GG  130 (466)
T ss_pred             Cc--------------CcccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEE---cCCCEEEEEecC--CC
Confidence            00              00011122222211           122222444  2221 1111   111444554433  22


Q ss_pred             eEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~  229 (259)
                      ...++||+||+|||  +.|+.|  ||.+. .+........... ...+++++|||+|++|+|+|..|.+.+.+|+++++.
T Consensus       131 ~~~~~~d~lViATG--s~p~~~--pg~~~-~~~v~~~~~~~~~-~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  204 (466)
T PRK07818        131 TETVTFDNAIIATG--SSTRLL--PGTSL-SENVVTYEEQILS-RELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFL  204 (466)
T ss_pred             eeEEEcCEEEEeCC--CCCCCC--CCCCC-CCcEEchHHHhcc-ccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecC
Confidence            34799999999999  667653  44321 1222222211111 123589999999999999999999999999999988


Q ss_pred             C------Cccccc----CCCC-CCCceEeeeeeEEeec
Q 024975          230 V------ADETHE----KQPG-YDNMWLHSMVRTKKCS  256 (259)
Q Consensus       230 ~------~~~~~~----~~~~-~~~~~~~~~v~~~~~~  256 (259)
                      +      ++++.+    .+.+ ..++..++.|++++..
T Consensus       205 ~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~  242 (466)
T PRK07818        205 DRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDN  242 (466)
T ss_pred             CCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEe
Confidence            7      222222    2211 2344455777777643

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.88  E-value=1.8e-21  Score=166.21  Aligned_cols=213  Identities=17%  Similarity=0.225  Sum_probs=120.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC-CCcCceeeeCCCCCCCCCCCCCCCCCccccc-cccceeccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~-~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   79 (259)
                      .||++|||+||+|..+|..+++.|.+|+|||+. ..+||+|...        +|.|++.++.... +..+........++
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~--------GCiPsK~l~~~a~~~~~~~~~~~~~~~G  187 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNV--------GCIPSKALLYATGKYRELKNLAKLYTYG  187 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEe--------CCcchHHHHHHHHHHHHHHhccccccCC
Confidence            479999999999999999999999999999974 3699999887        9999887776543 23332211001111


Q ss_pred             ec--CCCC---CccCCCCCCCCCCCCCHHHHHHHHHHHHHHh--CCce-----eEEeceeEEEEEEeCC---CcEEEEEE
Q 024975           80 FQ--AYPF---VARNYEGSVDLRRYPGHEEVLRYLQNFAREF--GVDQ-----VVRLHTEVLNARLVES---NKWKVKSR  144 (259)
Q Consensus        80 ~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~-----~v~~~~~v~~i~~~~~---~~~~v~~~  144 (259)
                      +.  .++-   .............-.....+.++.+....+.  ++..     .+......+.+.....   +..+|...
T Consensus       188 i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~  267 (659)
T PTZ00153        188 IYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE  267 (659)
T ss_pred             eeeccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc
Confidence            11  0000   0000000000000112233333333322221  0000     0111112222222110   11223332


Q ss_pred             ecCCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEE
Q 024975          145 KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVH  224 (259)
Q Consensus       145 ~g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~  224 (259)
                      .+.   ..+.||+||+|||  +.|..|..++...  .....+..... ....+++++|||+|++|+|+|..|.+.|.+||
T Consensus       268 ~~g---~~i~ad~lIIATG--S~P~~P~~~~~~~--~~V~ts~d~~~-l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVT  339 (659)
T PTZ00153        268 KSG---KEFKVKNIIIATG--STPNIPDNIEVDQ--KSVFTSDTAVK-LEGLQNYMGIVGMGIIGLEFMDIYTALGSEVV  339 (659)
T ss_pred             cCC---EEEECCEEEEcCC--CCCCCCCCCCCCC--CcEEehHHhhh-hhhcCCceEEECCCHHHHHHHHHHHhCCCeEE
Confidence            111   3689999999999  7888776554332  12222222211 12235789999999999999999999999999


Q ss_pred             EEecCC
Q 024975          225 IASRSV  230 (259)
Q Consensus       225 ~~~r~~  230 (259)
                      ++++.+
T Consensus       340 LIe~~~  345 (659)
T PTZ00153        340 SFEYSP  345 (659)
T ss_pred             EEeccC
Confidence            999987

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.2e-21  Score=149.30  Aligned_cols=201  Identities=20%  Similarity=0.216  Sum_probs=158.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .|||+|||+||+|-++|.+.+|.|++.=++-  .++||....+...                              ..|.
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~~I------------------------------ENfI  258 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMGI------------------------------ENFI  258 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccccch------------------------------hhee
Confidence            4899999999999999999999998754432  2377776543110                              0111


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeC--CCcEEEEEEecCCceEEEEeCEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                      ..|              +..+.++...|++...++.++  +....+++++++..  ++-.+|++.+|.    .+.++.||
T Consensus       259 sv~--------------~teGpkl~~ale~Hv~~Y~vD--imn~qra~~l~~a~~~~~l~ev~l~nGa----vLkaktvI  318 (520)
T COG3634         259 SVP--------------ETEGPKLAAALEAHVKQYDVD--VMNLQRASKLEPAAVEGGLIEVELANGA----VLKARTVI  318 (520)
T ss_pred             ccc--------------cccchHHHHHHHHHHhhcCch--hhhhhhhhcceecCCCCccEEEEecCCc----eeccceEE
Confidence            122              223388999999999999999  88888999998743  256889999987    89999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC----Ccccc
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV----ADETH  235 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~----~~~~~  235 (259)
                      +|||  ...+-.++||.+.|..+....|+.++...+++|+|+|||+|+||+|.|..|+.....||++.=.+    +.-+.
T Consensus       319 lstG--ArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq  396 (520)
T COG3634         319 LATG--ARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQ  396 (520)
T ss_pred             EecC--cchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHH
Confidence            9999  67788899999999999898899999989999999999999999999999999999999998777    45566


Q ss_pred             cCCCCCCCceEe--eeeeEEeec
Q 024975          236 EKQPGYDNMWLH--SMVRTKKCS  256 (259)
Q Consensus       236 ~~~~~~~~~~~~--~~v~~~~~~  256 (259)
                      +++...+|+.+.  .+-+++.++
T Consensus       397 ~kl~sl~Nv~ii~na~Ttei~Gd  419 (520)
T COG3634         397 DKLRSLPNVTIITNAQTTEVKGD  419 (520)
T ss_pred             HHHhcCCCcEEEecceeeEEecC
Confidence            677666666654  344444443

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.87  E-value=5e-21  Score=159.89  Aligned_cols=200  Identities=17%  Similarity=0.186  Sum_probs=123.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (259)
                      |+|++|||+|++|+.+|..|.++|.+|+|+|+.. +||+|...        +|.|.+.++... ....+.. ........
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~--------gciPsK~l~~~a~~~~~~~~-~~~~g~~~   70 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLT--------DCVPSKTLIATAEVRTELRR-AAELGIRF   70 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCccccc--------CCcchHHHHHHHHHHHHHHH-HHhCCccc
Confidence            5799999999999999999999999999999964 89999876        777777665543 2222211 11100000


Q ss_pred             -----cCCCCCccCCCCCCCCCCCC--CHHHHHHHHHHHHHHhCCceeEEeceeEEEEE--EeCCCcEEEEEEecCCceE
Q 024975           81 -----QAYPFVARNYEGSVDLRRYP--GHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR--LVESNKWKVKSRKKDDVVE  151 (259)
Q Consensus        81 -----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~--~~~~~~~~v~~~~g~~~~~  151 (259)
                           ....|...        ..+.  -...+...+.+.+++.+++  ++.+ ++..+.  ..+ +.+.|...++  +..
T Consensus        71 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~gV~--~~~g-~~~~~~~~~~~-~~v~V~~~~g--~~~  136 (466)
T PRK07845         71 IDDGEARVDLPAV--------NARVKALAAAQSADIRARLEREGVR--VIAG-RGRLIDPGLGP-HRVKVTTADG--GEE  136 (466)
T ss_pred             ccCcccccCHHHH--------HHHHHHHHHHHHHHHHHHHHHCCCE--EEEE-EEEEeecccCC-CEEEEEeCCC--ceE
Confidence                 00000000        0000  0012233445555666887  6554 444433  222 4556655443  224


Q ss_pred             EEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          152 EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       152 ~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+.||+||+|||  +.|..|+.++...  ............. ..+++++|||+|.+|+|+|..|.+.+.+|+++++.+
T Consensus       137 ~~~~d~lViATG--s~p~~~p~~~~~~--~~v~~~~~~~~~~-~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~  210 (466)
T PRK07845        137 TLDADVVLIATG--ASPRILPTAEPDG--ERILTWRQLYDLD-ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD  210 (466)
T ss_pred             EEecCEEEEcCC--CCCCCCCCCCCCC--ceEEeehhhhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            689999999999  6776554433221  1122222222211 234789999999999999999999999999999977

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.87  E-value=2.3e-21  Score=171.89  Aligned_cols=161  Identities=22%  Similarity=0.334  Sum_probs=116.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+|||||||||+||..|+++|++|+|||+.+.+||...+.                                     
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG-------------------------------------  348 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG-------------------------------------  348 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc-------------------------------------
Confidence            4789999999999999999999999999999999999988752                                     


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                       .|             .|....++.....+.+.+.|++  ++.++.+-.         .+++++..    ...||+||+|
T Consensus       349 -IP-------------~~rlp~~vi~~~i~~l~~~Gv~--f~~n~~vG~---------dit~~~l~----~~~yDAV~LA  399 (944)
T PRK12779        349 -IP-------------EFRLPNQLIDDVVEKIKLLGGR--FVKNFVVGK---------TATLEDLK----AAGFWKIFVG  399 (944)
T ss_pred             -CC-------------CCcChHHHHHHHHHHHHhhcCe--EEEeEEecc---------EEeHHHhc----cccCCEEEEe
Confidence             00             0111156666666777778988  877765421         23333211    3569999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCC--------------CC-CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEE
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR--------------IP-NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIA  226 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~--------------~~-~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~  226 (259)
                      ||+ ..|+.+.+||.+. .+. .....|.              .. ....+++|+|||+|.+|+|+|..+.+.|.+|+++
T Consensus       400 tGA-~~pr~l~IpG~dl-~GV-~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv  476 (944)
T PRK12779        400 TGA-GLPTFMNVPGEHL-LGV-MSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIV  476 (944)
T ss_pred             CCC-CCCCcCCCCCCcC-cCc-EEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            996 3688888888643 221 1111111              00 1225799999999999999999999999999999


Q ss_pred             ecCCC
Q 024975          227 SRSVA  231 (259)
Q Consensus       227 ~r~~~  231 (259)
                      +|++.
T Consensus       477 ~rr~~  481 (944)
T PRK12779        477 YRRTK  481 (944)
T ss_pred             EecCc
Confidence            99873

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.87  E-value=3e-21  Score=147.07  Aligned_cols=199  Identities=17%  Similarity=0.207  Sum_probs=136.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+|.++||||-+|++.|.+.++.|.++.|+|..-.+||+|...        +|.|++...+...+.........      
T Consensus        20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~--------GCVPKKvm~~~a~~~~~~~da~~------   85 (478)
T KOG0405|consen   20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNV--------GCVPKKVMWYAADYSEEMEDAKD------   85 (478)
T ss_pred             ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEee--------ccccceeEEehhhhhHHhhhhhh------
Confidence            4899999999999999999999999999999977899999887        88888777666655544443332      


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH----hCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE----FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~  157 (259)
                       +.|......+..|...-..++.+...|....++    .+++  +..+ +.   ...+++...|...++.  ...+++++
T Consensus        86 -yG~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~--~i~G-~a---~f~~~~~v~V~~~d~~--~~~Ytak~  156 (478)
T KOG0405|consen   86 -YGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVK--LIEG-RA---RFVSPGEVEVEVNDGT--KIVYTAKH  156 (478)
T ss_pred             -cCCccccccCCcHHHHHhhhhHHHHHHHHHHHhhcccccee--EEee-eE---EEcCCCceEEEecCCe--eEEEecce
Confidence             222221111112222222334444444444332    2333  2222 11   1222255667666653  34689999


Q ss_pred             EEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       158 VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +++|||  +.|-+|++||.+.    ...+..+.... ..+++++|+|+|++|+|+|..+...|.+++++.|.+
T Consensus       157 iLIAtG--g~p~~PnIpG~E~----gidSDgff~Le-e~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~  222 (478)
T KOG0405|consen  157 ILIATG--GRPIIPNIPGAEL----GIDSDGFFDLE-EQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE  222 (478)
T ss_pred             EEEEeC--CccCCCCCCchhh----ccccccccchh-hcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecc
Confidence            999999  8999999999764    23333333333 345899999999999999999999999999999999

>PRK09897 hypothetical protein; Provisional

Probab=99.87  E-value=1.1e-20  Score=157.69  Aligned_cols=210  Identities=18%  Similarity=0.282  Sum_probs=126.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCC-C--CCCCccccccccceeccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVD-P--NRYPVHSSLYKSLRVNLPRE   76 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~   76 (259)
                      |++|+||||||+|+++|.+|.+.+  .+|+|||++..+|..+.+........+... .  .........+.|+.......
T Consensus         1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~   80 (534)
T PRK09897          1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH   80 (534)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence            579999999999999999998864  589999999989977766542211000000 0  00011122222322211100


Q ss_pred             cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------CCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-------GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                         +.......    .......|++|..+..|+.+.+...       ++...++.+++|++++..+ +.|.+.+.++.  
T Consensus        81 ---~~~~g~~~----~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~-~g~~V~t~~gg--  150 (534)
T PRK09897         81 ---LQRYGVKK----ETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN-AGVMLATNQDL--  150 (534)
T ss_pred             ---HHhcCCcc----eeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC-CEEEEEECCCC--
Confidence               00000000    0112457888888888887755432       3221266788999998876 67888875532  


Q ss_pred             eEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCC--CCCCCCCCeEEEEccCcCHHHHHHHHhccc-------
Q 024975          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR--IPNPFQDQVVILIGHYASGLDIKRDLAGFA-------  220 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~v~viG~G~~a~e~a~~l~~~~-------  220 (259)
                       ..+.+|+||+|||+. .|..+.  +...|     ....+.  .....++.+|+|+|.|+|++|++..|...+       
T Consensus       151 -~~i~aD~VVLAtGh~-~p~~~~--~~~~y-----i~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~  221 (534)
T PRK09897        151 -PSETFDLAVIATGHV-WPDEEE--ATRTY-----FPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDD  221 (534)
T ss_pred             -eEEEcCEEEECCCCC-CCCCCh--hhccc-----cCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceeccC
Confidence             378999999999973 332221  11111     011111  111234689999999999999999986442       


Q ss_pred             --------------CeEEEEecCC
Q 024975          221 --------------KEVHIASRSV  230 (259)
Q Consensus       221 --------------~~v~~~~r~~  230 (259)
                                    .+|++++|+.
T Consensus       222 ~~~~~l~y~~sg~~~~I~a~SRrG  245 (534)
T PRK09897        222 KQHVVFHRDNASEKLNITLMSRTG  245 (534)
T ss_pred             CCcceeeecCCCCCceEEEEeCCC
Confidence                          3699999999

>TIGR03452 mycothione_red mycothione reductase

Probab=99.86  E-value=6.3e-21  Score=158.60  Aligned_cols=210  Identities=14%  Similarity=0.174  Sum_probs=126.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .||++|||+||+|..+|..  ..|.+|+++|+ ..+||+|...        +|.|.+.++.+..................
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~--------GCiPsK~l~~~a~~~~~~~~~~~~g~~~~   70 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNV--------GCIPTKMFVYAAEVAQSIGESARLGIDAE   70 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeecc--------CccchHHHHHHHHHHHHHHHhhccCeeCC
Confidence            5899999999999998654  47999999998 5689999887        89998877765433222222111111000


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHH------------HH---HHhCCceeEEeceeEEEEEEeCCCcEEEEEEec
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQN------------FA---REFGVDQVVRLHTEVLNARLVESNKWKVKSRKK  146 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------~~---~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g  146 (259)
                      ...               ....++.++...            ..   ++.+++  ++.++.+..      +.++|.+.++
T Consensus        71 ~~~---------------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~~~~------~~~~V~~~~g  127 (452)
T TIGR03452        71 IDS---------------VRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNID--VYDGHARFV------GPRTLRTGDG  127 (452)
T ss_pred             CCc---------------cCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeE--EEEEEEEEe------cCCEEEECCC
Confidence            000               000222221111            11   114565  555443222      3356666554


Q ss_pred             CCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEc-ccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEE
Q 024975          147 DDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHS-HNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHI  225 (259)
Q Consensus       147 ~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~  225 (259)
                      .    .++||+||+|||  +.|..|+..+..   +....+ ....... ..+++++|||+|++|+|+|..|.+.+.+|++
T Consensus       128 ~----~~~~d~lIiATG--s~p~~p~~~~~~---~~~~~~~~~~~~l~-~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtl  197 (452)
T TIGR03452       128 E----EITGDQIVIAAG--SRPYIPPAIADS---GVRYHTNEDIMRLP-ELPESLVIVGGGYIAAEFAHVFSALGTRVTI  197 (452)
T ss_pred             c----EEEeCEEEEEEC--CCCCCCCCCCCC---CCEEEcHHHHHhhh-hcCCcEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            3    689999999999  778777633321   111221 1211111 2358999999999999999999999999999


Q ss_pred             EecCC------CcccccCC----CCCCCceEeeeeeEEee
Q 024975          226 ASRSV------ADETHEKQ----PGYDNMWLHSMVRTKKC  255 (259)
Q Consensus       226 ~~r~~------~~~~~~~~----~~~~~~~~~~~v~~~~~  255 (259)
                      +.|.+      ++++.+.+    .....++.+..|++++.
T Consensus       198 i~~~~~ll~~~d~~~~~~l~~~~~~gI~i~~~~~V~~i~~  237 (452)
T TIGR03452       198 VNRSTKLLRHLDEDISDRFTEIAKKKWDIRLGRNVTAVEQ  237 (452)
T ss_pred             EEccCccccccCHHHHHHHHHHHhcCCEEEeCCEEEEEEE
Confidence            99987      23333222    12234555577777764

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.85  E-value=1.8e-20  Score=155.67  Aligned_cols=160  Identities=29%  Similarity=0.446  Sum_probs=112.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+|||+|++|+++|..|++.|++|+|||+.+.+||.+.+.                                     
T Consensus       133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g-------------------------------------  175 (449)
T TIGR01316       133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG-------------------------------------  175 (449)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec-------------------------------------
Confidence            4799999999999999999999999999999998888877541                                     


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                       .+.           ...+  .++.....+.+.+.+++  ++.++.+.         ..+.+.+.     ...||+||+|
T Consensus       176 -ip~-----------~~~~--~~~~~~~~~~l~~~gv~--~~~~~~v~---------~~v~~~~~-----~~~yd~viiA  225 (449)
T TIGR01316       176 -IPE-----------FRLP--KEIVVTEIKTLKKLGVT--FRMNFLVG---------KTATLEEL-----FSQYDAVFIG  225 (449)
T ss_pred             -CCC-----------ccCC--HHHHHHHHHHHHhCCcE--EEeCCccC---------CcCCHHHH-----HhhCCEEEEe
Confidence             000           0001  44445555556677888  77776431         11222221     2468999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCC--------------CCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEe
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR--------------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS  227 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~--------------~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~  227 (259)
                      ||+ +.|+.|.+||.+. .+ .+....+.              ......+++|+|||+|++|+|+|..+.+.|.+|++++
T Consensus       226 tGa-~~p~~~~ipG~~~-~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~  302 (449)
T TIGR01316       226 TGA-GLPKLMNIPGEEL-CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLY  302 (449)
T ss_pred             CCC-CCCCcCCCCCCCC-CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence            995 3688888888653 22 11111110              0112356899999999999999999999999999999


Q ss_pred             cCCC
Q 024975          228 RSVA  231 (259)
Q Consensus       228 r~~~  231 (259)
                      |++.
T Consensus       303 ~~~~  306 (449)
T TIGR01316       303 RRTR  306 (449)
T ss_pred             ecCc
Confidence            9873

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.84  E-value=6.3e-20  Score=152.24  Aligned_cols=170  Identities=16%  Similarity=0.236  Sum_probs=109.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      |++|+|||||++|+.+|..|++.  +.+|+|+|+++.++    +.+.                                 
T Consensus         1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~----~~~~---------------------------------   43 (438)
T PRK13512          1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS----FANC---------------------------------   43 (438)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc----cccC---------------------------------
Confidence            46899999999999999999986  57999999986542    1000                                 


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHHHHH-HHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYL-QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDA  157 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~  157 (259)
                        ..|+...        .......++..+. ..+.++.+++  ++.+++|++|+... +.  |.+.+++ +....+.||+
T Consensus        44 --~lp~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~--v~~~~~V~~Id~~~-~~--v~~~~~~~~~~~~~~yd~  108 (438)
T PRK13512         44 --ALPYYIG--------EVVEDRKYALAYTPEKFYDRKQIT--VKTYHEVIAINDER-QT--VTVLNRKTNEQFEESYDK  108 (438)
T ss_pred             --Ccchhhc--------CccCCHHHcccCCHHHHHHhCCCE--EEeCCEEEEEECCC-CE--EEEEECCCCcEEeeecCE
Confidence              0000000        0000111221121 2334556888  88899999998765 43  4444432 2334578999


Q ss_pred             EEEccCCCCCCccCCCCCCCCCCCceEEcccCCCC-------CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       158 VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|+|||  +.|+.|.+++..     ..........       ....+++++|||+|.+|+|+|..|.+.+.+|++++|.+
T Consensus       109 lviAtG--s~~~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~  181 (438)
T PRK13512        109 LILSPG--ASANSLGFESDI-----TFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD  181 (438)
T ss_pred             EEECCC--CCCCCCCCCCCC-----eEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence            999999  777776644211     1111100000       11235899999999999999999999999999999987

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.84  E-value=3e-20  Score=163.02  Aligned_cols=157  Identities=24%  Similarity=0.338  Sum_probs=107.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+||||||+|+++|+.|++.|++|+|+|+.+.+||.+.+..                                   +
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~I-----------------------------------P  583 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNII-----------------------------------P  583 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeec-----------------------------------c
Confidence            46899999999999999999999999999999998988876410                                   0


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .+.              .+  .++.....+.+.+.+++  ++.++.+ .+...          ..    ....+|+||+|
T Consensus       584 ~~R--------------lp--~evL~~die~l~~~GVe--~~~gt~V-di~le----------~L----~~~gYDaVILA  630 (1019)
T PRK09853        584 QFR--------------IP--AELIQHDIEFVKAHGVK--FEFGCSP-DLTVE----------QL----KNEGYDYVVVA  630 (1019)
T ss_pred             ccc--------------cc--HHHHHHHHHHHHHcCCE--EEeCcee-EEEhh----------hh----eeccCCEEEEC
Confidence            000              01  33444444566667888  8888766 22211          11    13558999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCC------CCCCCCCCeEEEEccCcCHHHHHHHHhccc--CeEEEEecCC
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR------IPNPFQDQVVILIGHYASGLDIKRDLAGFA--KEVHIASRSV  230 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~v~viG~G~~a~e~a~~l~~~~--~~v~~~~r~~  230 (259)
                      ||+. .++.+.++|...  + ......+.      ......+++|+|||+|++|+|+|..+.+.+  .+|++++|++
T Consensus       631 TGA~-~~~~l~IpG~~~--g-V~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~  703 (1019)
T PRK09853        631 IGAD-KNGGLKLEGGNQ--N-VIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  703 (1019)
T ss_pred             cCCC-CCCCCCCCCccC--C-ceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence            9963 345556666541  1 11111111      112235799999999999999999988773  4899999986

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.84  E-value=7e-20  Score=149.46  Aligned_cols=166  Identities=17%  Similarity=0.262  Sum_probs=113.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (259)
                      |+++|+|||+|++|+++|..|++.  ..+|+|+++.+..    .++.                 . ...        .. 
T Consensus         1 m~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~----~y~~-----------------~-~l~--------~~-   49 (377)
T PRK04965          1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD----EYNK-----------------P-DLS--------HV-   49 (377)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC----CcCc-----------------C-cCc--------HH-
Confidence            678999999999999999999886  4589999997532    0000                 0 000        00 


Q ss_pred             eecCCCCCccCCCCCCCCCCCCCHHHHHH-HHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCE
Q 024975           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLR-YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~  157 (259)
                          +.            . .....++.. ...+++++.+++  ++.+++|++++...   ..+.++ +    ..+.||+
T Consensus        50 ----~~------------~-~~~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~---~~v~~~-~----~~~~yd~  102 (377)
T PRK04965         50 ----FS------------Q-GQRADDLTRQSAGEFAEQFNLR--LFPHTWVTDIDAEA---QVVKSQ-G----NQWQYDK  102 (377)
T ss_pred             ----Hh------------C-CCCHHHhhcCCHHHHHHhCCCE--EECCCEEEEEECCC---CEEEEC-C----eEEeCCE
Confidence                00            0 000133332 245566677888  88899999998653   345543 2    3799999


Q ss_pred             EEEccCCCCCCccCCCCCCCCCCCceEEcccCCC-----CCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI-----PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       158 VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ||+|||  +.+..|.++|...    .........     .....+++++|||+|++|+|+|..|.+.+.+|+++++.+
T Consensus       103 LVlATG--~~~~~p~i~G~~~----v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~  174 (377)
T PRK04965        103 LVLATG--ASAFVPPIPGREL----MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA  174 (377)
T ss_pred             EEECCC--CCCCCCCCCCCce----EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence            999999  7788888888653    111111100     111246889999999999999999999999999999987

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.83  E-value=1e-19  Score=151.74  Aligned_cols=173  Identities=18%  Similarity=0.265  Sum_probs=112.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      ++|+|||||++|+++|..|++.+  .+|+|||+++.++  +...                                    
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~------------------------------------   42 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGAC------------------------------------   42 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecC------------------------------------
Confidence            37999999999999999999875  5899999987542  1000                                    


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                       ..++..        ...+....++..+..+.+.+.+++  ++.+++|++++..+ +.+.+.... ++....+.||++|+
T Consensus        43 -~~~~~~--------~~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~-~~v~~~~~~-~~~~~~~~yd~lvi  109 (444)
T PRK09564         43 -GLPYFV--------GGFFDDPNTMIARTPEEFIKSGID--VKTEHEVVKVDAKN-KTITVKNLK-TGSIFNDTYDKLMI  109 (444)
T ss_pred             -CCceEe--------ccccCCHHHhhcCCHHHHHHCCCe--EEecCEEEEEECCC-CEEEEEECC-CCCEEEecCCEEEE
Confidence             000000        000111123333334445567888  88899999998765 444443211 12222334999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCCceEEcccCCCC-------CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       161 AtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |||  +.|..|.++|... . .......+...       ....+++++|+|+|++|+|+|..+.+.+.+|+++.+.+
T Consensus       110 AtG--~~~~~~~i~g~~~-~-~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~  182 (444)
T PRK09564        110 ATG--ARPIIPPIKNINL-E-NVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED  182 (444)
T ss_pred             CCC--CCCCCCCCCCcCC-C-CEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence            999  7788888888653 1 12221111110       11245899999999999999999999999999999876

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.83  E-value=5e-20  Score=161.94  Aligned_cols=161  Identities=26%  Similarity=0.432  Sum_probs=111.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+||||||+|+++|..|++.|++|+|||+.+.+||.+.+.         .                          +
T Consensus       431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------i--------------------------p  475 (752)
T PRK12778        431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG---------I--------------------------P  475 (752)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------C--------------------------C
Confidence            4689999999999999999999999999999988888887651         0                          0


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      ++.              .|  .++.....+.+.+.+++  ++.++.+.       .  .+.+++.    ....||+||+|
T Consensus       476 ~~r--------------lp--~~~~~~~~~~l~~~gv~--~~~~~~v~-------~--~v~~~~l----~~~~ydavvlA  524 (752)
T PRK12778        476 EFR--------------LP--KKIVDVEIENLKKLGVK--FETDVIVG-------K--TITIEEL----EEEGFKGIFIA  524 (752)
T ss_pred             CCC--------------CC--HHHHHHHHHHHHHCCCE--EECCCEEC-------C--cCCHHHH----hhcCCCEEEEe
Confidence            000              11  33444445556677888  77776431       1  1222221    13569999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCC-------------CCCCCCCCeEEEEccCcCHHHHHHHHhcccCe-EEEEe
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR-------------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKE-VHIAS  227 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~-------------~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~-v~~~~  227 (259)
                      ||+ ..++.+.+||.+. .+. .....+.             ......+++|+|||+|++|+|+|..+.+.|.+ |++++
T Consensus       525 tGa-~~~~~l~ipG~~~-~gV-~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~  601 (752)
T PRK12778        525 SGA-GLPNFMNIPGENS-NGV-MSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVY  601 (752)
T ss_pred             CCC-CCCCCCCCCCCCC-CCc-EEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEee
Confidence            995 2578888888653 111 1111111             01123578999999999999999999999876 99999


Q ss_pred             cCCC
Q 024975          228 RSVA  231 (259)
Q Consensus       228 r~~~  231 (259)
                      |++.
T Consensus       602 r~~~  605 (752)
T PRK12778        602 RRSE  605 (752)
T ss_pred             ecCc
Confidence            9874

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=99.83  E-value=5.7e-20  Score=141.85  Aligned_cols=230  Identities=17%  Similarity=0.194  Sum_probs=141.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-cccccee-ccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRV-NLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~   79 (259)
                      .||++|||+||+|..+|...++.|++.+.+|+...+||+|...        +|.|++.++... .|..++. ...+....
T Consensus        39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnv--------GcIPSKALL~nSh~yh~~q~~~~~~rGi~  110 (506)
T KOG1335|consen   39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNV--------GCIPSKALLNNSHLYHEAQHEDFASRGID  110 (506)
T ss_pred             cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeec--------cccccHHHhhhhHHHHHHhhhHHHhcCcc
Confidence            4899999999999999999999999999999999999999876        899988877754 4444443 22222222


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                      .....++.....    ...--.-.++..-+.....+.+++  +..+..  ++ .   +.-+|.....++..+.+.++.+|
T Consensus       111 vs~~~~dl~~~~----~~k~~~vk~Lt~gi~~lfkknkV~--~~kG~g--sf-~---~p~~V~v~k~dg~~~ii~aKnIi  178 (506)
T KOG1335|consen  111 VSSVSLDLQAMM----KAKDNAVKQLTGGIENLFKKNKVT--YVKGFG--SF-L---DPNKVSVKKIDGEDQIIKAKNII  178 (506)
T ss_pred             ccceecCHHHHH----HHHHHHHHHHhhHHHHHhhhcCeE--EEeeeE--ee-c---CCceEEEeccCCCceEEeeeeEE
Confidence            221111110000    000000022333333444444444  222211  11 1   23445555555566789999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC------Ccc
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV------ADE  233 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~------~~~  233 (259)
                      +|||  |.  ++.+||+.- ......+..-......-+++++|||+|..|.|+..-..++|.+||+++-.+      |+|
T Consensus       179 iATG--Se--V~~~PGI~I-DekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~E  253 (506)
T KOG1335|consen  179 IATG--SE--VTPFPGITI-DEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGE  253 (506)
T ss_pred             EEeC--Cc--cCCCCCeEe-cCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHH
Confidence            9999  42  334556543 233333333333333445899999999999999999999999999998887      444


Q ss_pred             cc---cCCCCCCCceE--eeeeeEEeec
Q 024975          234 TH---EKQPGYDNMWL--HSMVRTKKCS  256 (259)
Q Consensus       234 ~~---~~~~~~~~~~~--~~~v~~~~~~  256 (259)
                      +.   ++++.+-.+++  ++.|...+..
T Consensus       254 isk~~qr~L~kQgikF~l~tkv~~a~~~  281 (506)
T KOG1335|consen  254 ISKAFQRVLQKQGIKFKLGTKVTSATRN  281 (506)
T ss_pred             HHHHHHHHHHhcCceeEeccEEEEeecc
Confidence            43   33333444444  4666655544

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.83  E-value=6.3e-19  Score=141.12  Aligned_cols=212  Identities=20%  Similarity=0.298  Sum_probs=138.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC---CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcc-c----cccccceecc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG---HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH-S----SLYKSLRVNL   73 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g---~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~   73 (259)
                      |++|+|||+|++|+++|.+|.+.-   ..|.|||+.+.+|.+..|....+....+.......+. .    ..+.|+....
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~   80 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL   80 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence            589999999999999999999862   2499999999999999987655433333333222222 1    1222333220


Q ss_pred             ccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh---CCc-eeEEeceeEEEEEEeCC-CcEEEEEEecCC
Q 024975           74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF---GVD-QVVRLHTEVLNARLVES-NKWKVKSRKKDD  148 (259)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~-~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~  148 (259)
                          .     .. ........+...||+|..|..|+.+....+   +-. ...+.+++++++.+.++ ..|.+...+|+ 
T Consensus        81 ----~-----~~-~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~-  149 (474)
T COG4529          81 ----Q-----RY-RDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGP-  149 (474)
T ss_pred             ----c-----cc-CChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCC-
Confidence                0     00 000012357789999999999998877654   211 13566788888887743 56888888876 


Q ss_pred             ceEEEEeCEEEEccCCCCCCccCCCCCCCCCCC-ceEEcccCCCC---CCCCCCeEEEEccCcCHHHHHHHHhccc--Ce
Q 024975          149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPG-KQMHSHNYRIP---NPFQDQVVILIGHYASGLDIKRDLAGFA--KE  222 (259)
Q Consensus       149 ~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~-~~~~~~~~~~~---~~~~~~~v~viG~G~~a~e~a~~l~~~~--~~  222 (259)
                         ...||.+|+|||+ +.|..+. - ...+.+ .......+...   ......+|+|+|+|++.+|+...|.+.|  .+
T Consensus       150 ---~~~ad~~Vlatgh-~~~~~~~-~-~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~  223 (474)
T COG4529         150 ---SEIADIIVLATGH-SAPPADP-A-ARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGP  223 (474)
T ss_pred             ---eeeeeEEEEeccC-CCCCcch-h-hhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccc
Confidence               8899999999997 3333222 1 111111 11222222211   1234567999999999999999998875  46


Q ss_pred             EEEEecCC
Q 024975          223 VHIASRSV  230 (259)
Q Consensus       223 v~~~~r~~  230 (259)
                      ||+++|+.
T Consensus       224 It~iSRrG  231 (474)
T COG4529         224 ITAISRRG  231 (474)
T ss_pred             eEEEeccc
Confidence            99999999

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.83  E-value=1.2e-19  Score=162.39  Aligned_cols=165  Identities=22%  Similarity=0.343  Sum_probs=113.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+||||||+||++|..|+++|++|+|||+.+.+||...+.                                     
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g-------------------------------------  472 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG-------------------------------------  472 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc-------------------------------------
Confidence            3789999999999999999999999999999998888776541                                     


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                       .|.             |....++.....+.+.+.|++  +++++.+ +      ..+.+....     ....||.||+|
T Consensus       473 -ip~-------------~rl~~e~~~~~~~~l~~~Gv~--~~~~~~v-g------~~~~~~~l~-----~~~~yDaViIA  524 (1006)
T PRK12775        473 -IPS-------------FRLPRDIIDREVQRLVDIGVK--IETNKVI-G------KTFTVPQLM-----NDKGFDAVFLG  524 (1006)
T ss_pred             -CCc-------------cCCCHHHHHHHHHHHHHCCCE--EEeCCcc-C------CccCHHHHh-----hccCCCEEEEe
Confidence             010             000155666666677788998  8877543 1      112211100     02458999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccC--------------CCCCCCCCCeEEEEccCcCHHHHHHHHhcccC-eEEEE
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY--------------RIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIA  226 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~--------------~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~-~v~~~  226 (259)
                      ||+ ..|+.+.+||... .+ +.....|              .......+++|+|||+|++|+|+|..+.+.|. .|+++
T Consensus       525 TGa-~~pr~l~IpG~~l-~g-V~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv  601 (1006)
T PRK12775        525 VGA-GAPTFLGIPGEFA-GQ-VYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCV  601 (1006)
T ss_pred             cCC-CCCCCCCCCCcCC-CC-cEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence            995 2578888888543 22 1222111              11122467999999999999999999998875 58999


Q ss_pred             ecCCCccc
Q 024975          227 SRSVADET  234 (259)
Q Consensus       227 ~r~~~~~~  234 (259)
                      +|+...++
T Consensus       602 ~rr~~~em  609 (1006)
T PRK12775        602 YRRSEAEA  609 (1006)
T ss_pred             eecCcccC
Confidence            99874443

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.83  E-value=5.4e-20  Score=143.77  Aligned_cols=161  Identities=17%  Similarity=0.266  Sum_probs=120.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCc---c---ccccccceeccc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPV---H---SSLYKSLRVNLP   74 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~   74 (259)
                      +++||+||||||+||+||..+.++|.+|+|||+.+.+|.........+++.++..+...++   +   ..+++.+....+
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~   81 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP   81 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence            4689999999999999999999999999999999999877766666666665555421111   1   223444445555


Q ss_pred             cccceecCCCCCccCCCCCCCCCCCCC---HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceE
Q 024975           75 RELMGFQAYPFVARNYEGSVDLRRYPG---HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE  151 (259)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~  151 (259)
                      ++...|.+-.....  ..+...+.||.   ...+.+.+...+++.+++  ++.+++|.+++..+ ..+.+.+.++.    
T Consensus        82 ~d~i~~~e~~Gi~~--~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~--i~~~~~v~~v~~~~-~~f~l~t~~g~----  152 (408)
T COG2081          82 EDFIDWVEGLGIAL--KEEDLGRMFPDSDKASPIVDALLKELEALGVT--IRTRSRVSSVEKDD-SGFRLDTSSGE----  152 (408)
T ss_pred             HHHHHHHHhcCCee--EEccCceecCCccchHHHHHHHHHHHHHcCcE--EEecceEEeEEecC-ceEEEEcCCCC----
Confidence            55544432221111  11355677775   478899999999999999  99999999999986 78999999875    


Q ss_pred             EEEeCEEEEccCCCCCCcc
Q 024975          152 EETFDAVVVCNGHFSVPRL  170 (259)
Q Consensus       152 ~~~ad~VIlAtG~~s~~~~  170 (259)
                      .+.+|.+|+|||..|.|++
T Consensus       153 ~i~~d~lilAtGG~S~P~l  171 (408)
T COG2081         153 TVKCDSLILATGGKSWPKL  171 (408)
T ss_pred             EEEccEEEEecCCcCCCCC
Confidence            7999999999998888865

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.82  E-value=8.9e-20  Score=152.20  Aligned_cols=159  Identities=28%  Similarity=0.434  Sum_probs=111.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+||||||+|+++|..|.+.|++|+|+|+.+.+||.+.+.                                     
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g-------------------------------------  182 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG-------------------------------------  182 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc-------------------------------------
Confidence            4789999999999999999999999999999998888776531                                     


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                       .+.           ...+  .++..+..+.+.+.+++  ++.++.+..         .+.+++     ....||+||+|
T Consensus       183 -ip~-----------~~~~--~~~~~~~~~~l~~~gv~--~~~~~~v~~---------~v~~~~-----~~~~~d~vvlA  232 (457)
T PRK11749        183 -IPE-----------FRLP--KDIVDREVERLLKLGVE--IRTNTEVGR---------DITLDE-----LRAGYDAVFIG  232 (457)
T ss_pred             -CCC-----------ccCC--HHHHHHHHHHHHHcCCE--EEeCCEECC---------ccCHHH-----HHhhCCEEEEc
Confidence             000           0001  45666666777778888  877766521         111111     12679999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCCC--------CCCCCCCeEEEEccCcCHHHHHHHHhcccC-eEEEEecCC
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRI--------PNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSV  230 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~v~viG~G~~a~e~a~~l~~~~~-~v~~~~r~~  230 (259)
                      ||.. .++.+.++|... .+ +.....+..        .....+++|+|||+|.+|+|+|..+.+.+. +|++++|++
T Consensus       233 tGa~-~~~~~~i~G~~~-~g-v~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        233 TGAG-LPRFLGIPGENL-GG-VYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             cCCC-CCCCCCCCCccC-CC-cEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            9952 466677777643 22 121111110        112257899999999999999999999876 899999976

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.81  E-value=1.7e-19  Score=155.83  Aligned_cols=159  Identities=28%  Similarity=0.457  Sum_probs=109.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+|||+||+|+++|..|++.|++|+|||+.+.+||.+.+.         ..                          
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g---------ip--------------------------  237 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG---------IP--------------------------  237 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec---------CC--------------------------
Confidence            3689999999999999999999999999999999999887652         00                          


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .+              ..+  .++.....+.+.+.|++  +++++.+ +..        +..+..     ...||.||+|
T Consensus       238 ~~--------------~~~--~~~~~~~~~~l~~~Gv~--i~~~~~v-~~d--------v~~~~~-----~~~~DaVilA  285 (652)
T PRK12814        238 RF--------------RLP--ESVIDADIAPLRAMGAE--FRFNTVF-GRD--------ITLEEL-----QKEFDAVLLA  285 (652)
T ss_pred             CC--------------CCC--HHHHHHHHHHHHHcCCE--EEeCCcc-cCc--------cCHHHH-----HhhcCEEEEE
Confidence            00              011  44445555666677888  7777643 111        111111     2349999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCC-----CCCCCCCCeEEEEccCcCHHHHHHHHhcccC-eEEEEecCC
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR-----IPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSV  230 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~-~v~~~~r~~  230 (259)
                      ||+. .+..+.+||.+. .+. .....+.     ......+++|+|||+|++|+|+|..+.+.+. +|++++|++
T Consensus       286 tGa~-~~~~~~ipG~~~-~gv-~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        286 VGAQ-KASKMGIPGEEL-PGV-ISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             cCCC-CCCCCCCCCcCc-CCc-EeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            9952 334567777543 221 1111111     1223467999999999999999999998875 699999987

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.81  E-value=7.2e-19  Score=145.40  Aligned_cols=160  Identities=23%  Similarity=0.295  Sum_probs=107.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHH--cCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLR--EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~--~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      .++|+||||||+|++||..|++  .|++|+|||+.+.+||.+.+.         ..                        
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~g---------va------------------------   72 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSG---------VA------------------------   72 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeec---------cC------------------------
Confidence            4689999999999999999997  699999999999999887752         00                        


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                                       +.++.-..+...+.+.+...+++  ++.+..+-       .  .+.++.     ....||.||
T Consensus        73 -----------------P~~~~~k~v~~~~~~~~~~~~v~--~~~nv~vg-------~--dvtl~~-----L~~~yDaVI  119 (491)
T PLN02852         73 -----------------PDHPETKNVTNQFSRVATDDRVS--FFGNVTLG-------R--DVSLSE-----LRDLYHVVV  119 (491)
T ss_pred             -----------------CCcchhHHHHHHHHHHHHHCCeE--EEcCEEEC-------c--cccHHH-----HhhhCCEEE
Confidence                             01111144555666666666666  55554431       1  122222     124699999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceEEcccC----------CC--CCCCCCCeEEEEccCcCHHHHHHHHhcc--------
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNY----------RI--PNPFQDQVVILIGHYASGLDIKRDLAGF--------  219 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~----------~~--~~~~~~~~v~viG~G~~a~e~a~~l~~~--------  219 (259)
                      +|||+. .++.+.+||.+. .+ .+....+          ..  .....+++|+|||+|++|+|+|..|.+.        
T Consensus       120 lAtGa~-~~~~l~IpG~d~-~g-V~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~td  196 (491)
T PLN02852        120 LAYGAE-SDRRLGIPGEDL-PG-VLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTD  196 (491)
T ss_pred             EecCCC-CCCCCCCCCCCC-CC-eEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCcccccccc
Confidence            999952 346677887543 11 1111111          00  0113578999999999999999998764        


Q ss_pred             ------------c-CeEEEEecCC
Q 024975          220 ------------A-KEVHIASRSV  230 (259)
Q Consensus       220 ------------~-~~v~~~~r~~  230 (259)
                                  + .+|+++.|+.
T Consensus       197 i~~~~l~~l~~~~~~~V~iv~RRg  220 (491)
T PLN02852        197 IAEHALEALRGSSVRKVYLVGRRG  220 (491)
T ss_pred             ccHHHHHHHhhCCCCEEEEEEcCC
Confidence                        3 5799999999

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.81  E-value=3.1e-19  Score=146.51  Aligned_cols=168  Identities=13%  Similarity=0.176  Sum_probs=107.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      +++|+|||||++|+++|..|++.+.  +|+|+++.+...    +.                 +......+..        
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~----y~-----------------r~~l~~~~~~--------   53 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP----YE-----------------RPPLSKSMLL--------   53 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC----CC-----------------CCCCCHHHHC--------
Confidence            4689999999999999999999876  799999875331    00                 0000000000        


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                         .+...       .....+         .+...+.+++  ++.++.|+.+....   ..+.+.++.    .+.||+||
T Consensus        54 ---~~~~~-------~~~~~~---------~~~~~~~~i~--~~~g~~V~~id~~~---~~v~~~~g~----~~~yd~LV  105 (396)
T PRK09754         54 ---EDSPQ-------LQQVLP---------ANWWQENNVH--LHSGVTIKTLGRDT---RELVLTNGE----SWHWDQLF  105 (396)
T ss_pred             ---CCCcc-------ccccCC---------HHHHHHCCCE--EEcCCEEEEEECCC---CEEEECCCC----EEEcCEEE
Confidence               00000       000000         1223356888  88888999988653   456666554    79999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceEEcccCCC-----CCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI-----PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|||  +.++.+++++... . .........+     .....+++++|||+|++|+|+|..|.+.+.+|+++++.+
T Consensus       106 iATG--s~~~~~p~~~~~~-~-~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  177 (396)
T PRK09754        106 IATG--AAARPLPLLDALG-E-RCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA  177 (396)
T ss_pred             EccC--CCCCCCCCCCcCC-C-CEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            9999  6776655544321 1 1111110100     111246899999999999999999999999999999877

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.81  E-value=4.6e-19  Score=156.33  Aligned_cols=157  Identities=24%  Similarity=0.331  Sum_probs=104.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+||||||+|++||+.|++.|++|+|||+.+.+||.+.+.                                     
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~-------------------------------------  579 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI-------------------------------------  579 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec-------------------------------------
Confidence            3689999999999999999999999999999999898887642                                     


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                       .|.           ...+  .+......+.+...|++  ++++...         ...+  ...    ....+|+||+|
T Consensus       580 -IP~-----------~rlp--~e~l~~~ie~l~~~GVe--~~~g~~~---------d~~v--e~l----~~~gYDaVIIA  628 (1012)
T TIGR03315       580 -IPE-----------FRIS--AESIQKDIELVKFHGVE--FKYGCSP---------DLTV--AEL----KNQGYKYVILA  628 (1012)
T ss_pred             -ccc-----------cCCC--HHHHHHHHHHHHhcCcE--EEEeccc---------ceEh--hhh----hcccccEEEEC
Confidence             000           0001  33334444555567887  7665320         1111  111    13568999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCC----C--CCCCCCCeEEEEccCcCHHHHHHHHhcc-c-CeEEEEecCC
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR----I--PNPFQDQVVILIGHYASGLDIKRDLAGF-A-KEVHIASRSV  230 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~----~--~~~~~~~~v~viG~G~~a~e~a~~l~~~-~-~~v~~~~r~~  230 (259)
                      ||++ .++.+.++|...   .......+.    .  .....+++|+|||+|++|+|+|..+.+. | .+|++++|++
T Consensus       629 TGA~-~~~~l~I~G~~~---~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       629 IGAW-KHGPLRLEGGGE---RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             CCCC-CCCCCCcCCCCc---ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            9963 344455666432   111111111    1  1223579999999999999999998876 5 4799999987

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.81  E-value=2.7e-19  Score=157.41  Aligned_cols=169  Identities=17%  Similarity=0.228  Sum_probs=114.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc----CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL   77 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~----g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (259)
                      +++|||||+|++|+.+|..|.++    +.+|+||++.+.+.    +.+                 ..+...+        
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~----Y~r-----------------~~L~~~~--------   53 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA----YDR-----------------VHLSSYF--------   53 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc----ccC-----------------CcchHhH--------
Confidence            35899999999999999999865    47999999987542    100                 0000000        


Q ss_pred             ceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCE
Q 024975           78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (259)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~  157 (259)
                            ...              ...++.....+...+.+++  ++.+++|++++...   ..|.+.++.    .+.||+
T Consensus        54 ------~~~--------------~~~~l~~~~~~~~~~~gI~--~~~g~~V~~Id~~~---~~V~~~~G~----~i~yD~  104 (847)
T PRK14989         54 ------SHH--------------TAEELSLVREGFYEKHGIK--VLVGERAITINRQE---KVIHSSAGR----TVFYDK  104 (847)
T ss_pred             ------cCC--------------CHHHccCCCHHHHHhCCCE--EEcCCEEEEEeCCC---cEEEECCCc----EEECCE
Confidence                  000              0022323334455567898  88899999987643   456666554    799999


Q ss_pred             EEEccCCCCCCccCCCCCCCCCCCceEEcccCC---CCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR---IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       158 VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ||+|||  +.|..|.+||.+...-.........   ......+++++|||+|++|+|+|..|.+.+.+|+++++.+
T Consensus       105 LVIATG--s~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~  178 (847)
T PRK14989        105 LIMATG--SYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP  178 (847)
T ss_pred             EEECCC--CCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence            999999  7899999998764211111111100   0011245889999999999999999999999999999987

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=9.5e-19  Score=133.21  Aligned_cols=202  Identities=20%  Similarity=0.314  Sum_probs=132.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC-CC-------cCceeeeCCCCCCCCCCCCCCCCCccccccccceecc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQ-------VGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL   73 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~-~~-------~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (259)
                      .||.+|||||-+||+||.+.+..|.+|.++|-- +.       +||+|...        +|.|++...++.+.-.....+
T Consensus        19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNV--------GCIPKKLMHQAallG~al~da   90 (503)
T KOG4716|consen   19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNV--------GCIPKKLMHQAALLGEALHDA   90 (503)
T ss_pred             CccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeec--------ccccHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999863 11       25666654        777766554443322211111


Q ss_pred             ccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEece-eEEEEEEeCC--CcEEEEEEecCCce
Q 024975           74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHT-EVLNARLVES--NKWKVKSRKKDDVV  150 (259)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~-~v~~i~~~~~--~~~~v~~~~g~~~~  150 (259)
                      ..       +.|...      +...-+..+.+.+..+......+.--++.++. +|.-+..-..  +..++...+.++..
T Consensus        91 ~k-------yGW~~~------e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~  157 (503)
T KOG4716|consen   91 RK-------YGWNVD------EQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKE  157 (503)
T ss_pred             Hh-------hCCCCc------cccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCce
Confidence            11       112111      11222344778888888777665442233322 2222221111  34556666655666


Q ss_pred             EEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       151 ~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..++|+.+++|||  ..|+.|++||..++   ...+ +.....++.+-+.+|+|+|+.|.|.|..|...|.+|+++.|+=
T Consensus       158 ~~~ta~~fvIatG--~RPrYp~IpG~~Ey---~ITS-DDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI  231 (503)
T KOG4716|consen  158 RFLTAENFVIATG--LRPRYPDIPGAKEY---GITS-DDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI  231 (503)
T ss_pred             EEeecceEEEEec--CCCCCCCCCCceee---eecc-cccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe
Confidence            7899999999999  89999999997763   2222 2222333444568999999999999999999999999999987

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.80  E-value=5.1e-18  Score=152.67  Aligned_cols=199  Identities=17%  Similarity=0.149  Sum_probs=123.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+||+||||||+||++|..|.+.|.+|+|+|+++.+||.+.....                                   
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~-----------------------------------  207 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAE-----------------------------------  207 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecccc-----------------------------------
Confidence            369999999999999999999999999999999989887754200                                   


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEE--------ec-C-Cce
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSR--------KK-D-DVV  150 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~--------~g-~-~~~  150 (259)
                      ..+.              .+..++...+.+.+... +++  ++.+++|.++.... ....+...        .+ . ...
T Consensus       208 ~~~g--------------~~~~~~~~~~~~~l~~~~~v~--v~~~t~V~~i~~~~-~v~~v~~~~~~~~~~~~~~~~~~~  270 (985)
T TIGR01372       208 TIDG--------------KPAADWAAATVAELTAMPEVT--LLPRTTAFGYYDHN-TVGALERVTDHLDAPPKGVPRERL  270 (985)
T ss_pred             ccCC--------------ccHHHHHHHHHHHHhcCCCcE--EEcCCEEEEEecCC-eEEEEEEeeeccccccCCccccce
Confidence            0000              01134433344444444 477  88888888875321 11111100        00 0 112


Q ss_pred             EEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEc--ccCCC-CCCCCCCeEEEEccCcCHHHHHHHHhccc-CeEEEE
Q 024975          151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHS--HNYRI-PNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVHIA  226 (259)
Q Consensus       151 ~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~--~~~~~-~~~~~~~~v~viG~G~~a~e~a~~l~~~~-~~v~~~  226 (259)
                      ..+.++.||+|||  +.++.|.++|.+. ++.....  ..+.. ....++++++|+|+|.+++|+|..|.+.| ..|+++
T Consensus       271 ~~i~a~~VILATG--a~~r~~pipG~~~-pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv  347 (985)
T TIGR01372       271 WRIRAKRVVLATG--AHERPLVFANNDR-PGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAII  347 (985)
T ss_pred             EEEEcCEEEEcCC--CCCcCCCCCCCCC-CCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEE
Confidence            3689999999999  6788888888543 2222110  11111 12246799999999999999999999998 457888


Q ss_pred             ecCC--CcccccCCCCC-CCceEeeeeeEEee
Q 024975          227 SRSV--ADETHEKQPGY-DNMWLHSMVRTKKC  255 (259)
Q Consensus       227 ~r~~--~~~~~~~~~~~-~~~~~~~~v~~~~~  255 (259)
                      .+.+  .+.+.+.+.+. ..+..++.|+++++
T Consensus       348 ~~~~~~~~~l~~~L~~~GV~i~~~~~v~~i~g  379 (985)
T TIGR01372       348 DARADVSPEARAEARELGIEVLTGHVVAATEG  379 (985)
T ss_pred             ccCcchhHHHHHHHHHcCCEEEcCCeEEEEec
Confidence            7765  22333333221 23333455555543

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.79  E-value=2.5e-18  Score=138.99  Aligned_cols=171  Identities=27%  Similarity=0.359  Sum_probs=110.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+|||+|++|+++|..|++.|.+++++|+.+.+||.+....                                    
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~------------------------------------   61 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGI------------------------------------   61 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecC------------------------------------
Confidence            36899999999999999999999999999999988887665310                                    


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEE---eCCCcEEEEEEecCCceEEEEeCEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL---VESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~---~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                        +           ...++ ...+...+.++ .+.+++  ++.++.+..+..   .....+.......++  ..+.||+|
T Consensus        62 --~-----------~~~~~-~~~~~~~~~~l-~~~~i~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~l  122 (352)
T PRK12770         62 --P-----------EFRIP-IERVREGVKEL-EEAGVV--FHTRTKVCCGEPLHEEEGDEFVERIVSLEE--LVKKYDAV  122 (352)
T ss_pred             --c-----------ccccC-HHHHHHHHHHH-HhCCeE--EecCcEEeeccccccccccccccccCCHHH--HHhhCCEE
Confidence              0           00001 13344444444 445887  788877765432   111223222111110  13689999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCCceEEcc-------c----CCCC---CCCCCCeEEEEccCcCHHHHHHHHhcccCe-E
Q 024975          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSH-------N----YRIP---NPFQDQVVILIGHYASGLDIKRDLAGFAKE-V  223 (259)
Q Consensus       159 IlAtG~~s~~~~~~~~g~~~~~~~~~~~~-------~----~~~~---~~~~~~~v~viG~G~~a~e~a~~l~~~~~~-v  223 (259)
                      |+|||.+ .+..|.+||.+.. + +....       .    +...   ....+++++|+|+|++|+|+|..|...+.+ |
T Consensus       123 viAtGs~-~~~~~~ipg~~~~-~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~V  199 (352)
T PRK12770        123 LIATGTW-KSRKLGIPGEDLP-G-VYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKV  199 (352)
T ss_pred             EEEeCCC-CCCcCCCCCcccc-C-ceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeE
Confidence            9999942 4677888876531 1 11110       0    0011   122368999999999999999999888876 9


Q ss_pred             EEEecCC
Q 024975          224 HIASRSV  230 (259)
Q Consensus       224 ~~~~r~~  230 (259)
                      +++.|++
T Consensus       200 tvi~~~~  206 (352)
T PRK12770        200 YLAYRRT  206 (352)
T ss_pred             EEEeecc
Confidence            9999876

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.79  E-value=4.2e-19  Score=141.89  Aligned_cols=196  Identities=17%  Similarity=0.225  Sum_probs=125.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (259)
                      ++++|||||||.+|+.+|..|.+..  .+|+++|+.+..-                           +..+......   
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl---------------------------~~plL~eva~---   51 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL---------------------------FTPLLYEVAT---   51 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc---------------------------cchhhhhhhc---
Confidence            4688999999999999999999975  8999999986320                           0000000000   


Q ss_pred             eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCE
Q 024975           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~  157 (259)
                                         ...+..++.--++..+...+ ++   ....+|++|+.+.   -+|.+.++.    .+.||+
T Consensus        52 -------------------g~l~~~~i~~p~~~~~~~~~~v~---~~~~~V~~ID~~~---k~V~~~~~~----~i~YD~  102 (405)
T COG1252          52 -------------------GTLSESEIAIPLRALLRKSGNVQ---FVQGEVTDIDRDA---KKVTLADLG----EISYDY  102 (405)
T ss_pred             -------------------CCCChhheeccHHHHhcccCceE---EEEEEEEEEcccC---CEEEeCCCc----cccccE
Confidence                               00011333334455554333 44   4567899999865   456666533    799999


Q ss_pred             EEEccCCCCCCccCCCCCCCCCCCceEEccc-----------CCCCCCCCC----CeEEEEccCcCHHHHHHHHhcccC-
Q 024975          158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHN-----------YRIPNPFQD----QVVILIGHYASGLDIKRDLAGFAK-  221 (259)
Q Consensus       158 VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~----~~v~viG~G~~a~e~a~~l~~~~~-  221 (259)
                      +|+|+|  +.+..+.+||..++........+           |......+.    .+++|+|+|++|+|+|.+|.+... 
T Consensus       103 LVvalG--s~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~  180 (405)
T COG1252         103 LVVALG--SETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHR  180 (405)
T ss_pred             EEEecC--CcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHH
Confidence            999999  88999999997765322111111           111111111    379999999999999999975522 


Q ss_pred             ------------eEEEEecCC------Ccccc---cCCCCCCCce--EeeeeeEEeecc
Q 024975          222 ------------EVHIASRSV------ADETH---EKQPGYDNMW--LHSMVRTKKCSR  257 (259)
Q Consensus       222 ------------~v~~~~r~~------~~~~~---~~~~~~~~~~--~~~~v~~~~~~~  257 (259)
                                  +|+++++.+      ++++.   ++.+++.+++  .++.|++++.+.
T Consensus       181 l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~  239 (405)
T COG1252         181 LLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG  239 (405)
T ss_pred             HhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc
Confidence                        799999999      23332   2234444444  568899888764

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.78  E-value=3.2e-18  Score=148.45  Aligned_cols=160  Identities=26%  Similarity=0.391  Sum_probs=107.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+|||+||+||++|..|++.|++|+|||+.+.+||.+.+.         ..                          
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g---------ip--------------------------  371 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG---------IP--------------------------  371 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec---------CC--------------------------
Confidence            4689999999999999999999999999999999998887651         00                          


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .+.              .+  .++.....+.+.+.|++  ++.++.|..      .   +....     ....||.||+|
T Consensus       372 ~~~--------------l~--~~~~~~~~~~~~~~Gv~--~~~~~~v~~------~---i~~~~-----~~~~~DavilA  419 (654)
T PRK12769        372 AFK--------------LD--KSLLARRREIFSAMGIE--FELNCEVGK------D---ISLES-----LLEDYDAVFVG  419 (654)
T ss_pred             Ccc--------------CC--HHHHHHHHHHHHHCCeE--EECCCEeCC------c---CCHHH-----HHhcCCEEEEe
Confidence            000              01  44455555666677888  887776521      0   11111     02469999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEE-------------cccCCC-C-CCCCCCeEEEEccCcCHHHHHHHHhcccC-eEEE
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMH-------------SHNYRI-P-NPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHI  225 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~-------------~~~~~~-~-~~~~~~~v~viG~G~~a~e~a~~l~~~~~-~v~~  225 (259)
                      ||++ .++.+.+++... .|....             ...+.. . ....+++|+|||+|.+|+|+|..+.+.+. +|++
T Consensus       420 tGa~-~~~~l~i~g~~~-~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~  497 (654)
T PRK12769        420 VGTY-RSMKAGLPNEDA-PGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTC  497 (654)
T ss_pred             CCCC-CCCCCCCCCCCC-CCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence            9963 344556666543 121100             000000 0 12357899999999999999999888874 7999


Q ss_pred             EecCC
Q 024975          226 ASRSV  230 (259)
Q Consensus       226 ~~r~~  230 (259)
                      ++|++
T Consensus       498 i~~~~  502 (654)
T PRK12769        498 AYRRD  502 (654)
T ss_pred             eEecC
Confidence            99986

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.78  E-value=5.6e-18  Score=141.29  Aligned_cols=159  Identities=26%  Similarity=0.391  Sum_probs=109.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+|||+||+|+++|..|++.|.+|+|+|+.+.+||.+.+.                                     
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g-------------------------------------  183 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG-------------------------------------  183 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec-------------------------------------
Confidence            3689999999999999999999999999999999888876541                                     


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                       .|.           ...+  .++.....+.+.+.|++  ++.+++|..-         +..++     ....+|.||+|
T Consensus       184 -ip~-----------~~~~--~~~~~~~~~~~~~~Gv~--~~~~~~v~~~---------~~~~~-----~~~~~D~vilA  233 (467)
T TIGR01318       184 -IPS-----------FKLD--KAVLSRRREIFTAMGIE--FHLNCEVGRD---------ISLDD-----LLEDYDAVFLG  233 (467)
T ss_pred             -Ccc-----------ccCC--HHHHHHHHHHHHHCCCE--EECCCEeCCc---------cCHHH-----HHhcCCEEEEE
Confidence             000           0001  45556666777788998  8888766321         11111     12469999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcc-----------cC---C--CCCCCCCCeEEEEccCcCHHHHHHHHhccc-CeEE
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSH-----------NY---R--IPNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVH  224 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~-----------~~---~--~~~~~~~~~v~viG~G~~a~e~a~~l~~~~-~~v~  224 (259)
                      ||.. .+..+.++|.+. .+.. ...           ..   .  ......+++++|+|+|.+|+|+|..+.+.+ .+||
T Consensus       234 tGa~-~~~~~~i~g~~~-~gV~-~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vt  310 (467)
T TIGR01318       234 VGTY-RSMRGGLPGEDA-PGVL-QALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVT  310 (467)
T ss_pred             eCCC-CCCcCCCCCcCC-CCcE-EHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEE
Confidence            9952 223456676543 1211 100           00   0  001235789999999999999999998887 4799


Q ss_pred             EEecCC
Q 024975          225 IASRSV  230 (259)
Q Consensus       225 ~~~r~~  230 (259)
                      +++|++
T Consensus       311 vv~r~~  316 (467)
T TIGR01318       311 CAYRRD  316 (467)
T ss_pred             EEEecC
Confidence            999986

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.78  E-value=1.8e-18  Score=152.22  Aligned_cols=165  Identities=16%  Similarity=0.239  Sum_probs=112.6

Q ss_pred             EEEECCChHHHHHHHHHHHc---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            5 VAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         5 v~IIG~G~~Gl~~a~~L~~~---g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      |||||+|++|+.+|..|++.   +.+|+|||+.+.++    +.+.                 .+ ..+..          
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~----y~r~-----------------~L-~~~l~----------   48 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN----YNRI-----------------LL-SSVLQ----------   48 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC----cccc-----------------cc-cHHHC----------
Confidence            68999999999999999875   46999999987552    1000                 00 00000          


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                       -.               ...+++.....+.+.+.+++  ++.+++|++++...   +.|.+.++.    .+.||+||+|
T Consensus        49 -g~---------------~~~~~l~~~~~~~~~~~gv~--~~~g~~V~~Id~~~---k~V~~~~g~----~~~yD~LVlA  103 (785)
T TIGR02374        49 -GE---------------ADLDDITLNSKDWYEKHGIT--LYTGETVIQIDTDQ---KQVITDAGR----TLSYDKLILA  103 (785)
T ss_pred             -CC---------------CCHHHccCCCHHHHHHCCCE--EEcCCeEEEEECCC---CEEEECCCc----EeeCCEEEEC
Confidence             00               00022222223444567898  89999999998653   566776654    7999999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCCC-----CCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRI-----PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ||  +.|..|++||.+.. +. +......+     .....+++++|||+|++|+|+|..|.+.|.+|+++++.+
T Consensus       104 TG--s~p~~p~ipG~~~~-~v-~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~  173 (785)
T TIGR02374       104 TG--SYPFILPIPGADKK-GV-YVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP  173 (785)
T ss_pred             CC--CCcCCCCCCCCCCC-CE-EEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC
Confidence            99  78899999987642 21 11111000     011245889999999999999999999999999999887

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.77  E-value=6e-18  Score=146.17  Aligned_cols=160  Identities=25%  Similarity=0.367  Sum_probs=109.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+|||+||+|+++|..|++.|++|+|||+.+.+||.+.+.         ..+                         
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g---------ip~-------------------------  355 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFG---------IPP-------------------------  355 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeecc---------CCc-------------------------
Confidence            4789999999999999999999999999999999999888752         110                         


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                       +              ..+  ..+.....+.+.+.|++  +++++++..   +      +.++.     ....+|.|++|
T Consensus       356 -~--------------~l~--~~~~~~~~~~~~~~Gv~--~~~~~~v~~---~------~~~~~-----l~~~~DaV~la  402 (639)
T PRK12809        356 -F--------------KLD--KTVLSQRREIFTAMGID--FHLNCEIGR---D------ITFSD-----LTSEYDAVFIG  402 (639)
T ss_pred             -c--------------cCC--HHHHHHHHHHHHHCCeE--EEcCCccCC---c------CCHHH-----HHhcCCEEEEe
Confidence             0              011  45555556677788988  888876531   0      11111     12468999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEE----------cccCCC-----CCCCCCCeEEEEccCcCHHHHHHHHhccc-CeEEE
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMH----------SHNYRI-----PNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVHI  225 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~----------~~~~~~-----~~~~~~~~v~viG~G~~a~e~a~~l~~~~-~~v~~  225 (259)
                      ||++ .+..+.++|.+. .+...-          ......     .....+++++|+|+|.+++|.+..+.+.| .+||+
T Consensus       403 tGa~-~~~~~~i~g~~~-~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~  480 (639)
T PRK12809        403 VGTY-GMMRADLPHEDA-PGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTC  480 (639)
T ss_pred             CCCC-CCCCCCCCCCcc-CCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence            9963 344566676543 222110          000000     11235789999999999999999988887 58999


Q ss_pred             EecCC
Q 024975          226 ASRSV  230 (259)
Q Consensus       226 ~~r~~  230 (259)
                      ++|++
T Consensus       481 v~rr~  485 (639)
T PRK12809        481 AYRRD  485 (639)
T ss_pred             eeecC
Confidence            99987

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.77  E-value=7.6e-19  Score=145.20  Aligned_cols=199  Identities=15%  Similarity=0.165  Sum_probs=118.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +++|||||||++|+.+|..|.+.+.+|+|||+.+..-    +.                       .+            
T Consensus        10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~----~~-----------------------~~------------   50 (424)
T PTZ00318         10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML----FT-----------------------PL------------   50 (424)
T ss_pred             CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc----hh-----------------------hh------------
Confidence            5799999999999999999987778999999975320    00                       00            


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC----CceEEEEeCE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD----DVVEEETFDA  157 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~----~~~~~~~ad~  157 (259)
                       .+...        ...+ ..+++..-+...+...+++   +...+|++|+..+ +.+.+...+.+    .....+.||+
T Consensus        51 -l~~~~--------~g~~-~~~~~~~~~~~~~~~~~~~---~i~~~V~~Id~~~-~~v~~~~~~~~~~~~~~g~~i~yD~  116 (424)
T PTZ00318         51 -LPQTT--------TGTL-EFRSICEPVRPALAKLPNR---YLRAVVYDVDFEE-KRVKCGVVSKSNNANVNTFSVPYDK  116 (424)
T ss_pred             -HHHhc--------ccCC-ChHHhHHHHHHHhccCCeE---EEEEEEEEEEcCC-CEEEEecccccccccCCceEecCCE
Confidence             00000        0000 0033333445555555654   4567999998765 55555321110    1113799999


Q ss_pred             EEEccCCCCCCccCCCCCCCCCC--CceEEc-c--------cCCCC---C-----CCCCCeEEEEccCcCHHHHHHHHhc
Q 024975          158 VVVCNGHFSVPRLAQVPGIDSWP--GKQMHS-H--------NYRIP---N-----PFQDQVVILIGHYASGLDIKRDLAG  218 (259)
Q Consensus       158 VIlAtG~~s~~~~~~~~g~~~~~--~~~~~~-~--------~~~~~---~-----~~~~~~v~viG~G~~a~e~a~~l~~  218 (259)
                      +|+|||  +.+..+.+||.....  ...... .        .+...   .     ....++++|||+|++|+|+|.+|.+
T Consensus       117 LViAtG--s~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~  194 (424)
T PTZ00318        117 LVVAHG--ARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELAD  194 (424)
T ss_pred             EEECCC--cccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHH
Confidence            999999  788888888865421  000000 0        00000   0     0122589999999999999999975


Q ss_pred             --------------ccCeEEEEecCCC------cccccC---CCCCCCce--EeeeeeEEee
Q 024975          219 --------------FAKEVHIASRSVA------DETHEK---QPGYDNMW--LHSMVRTKKC  255 (259)
Q Consensus       219 --------------~~~~v~~~~r~~~------~~~~~~---~~~~~~~~--~~~~v~~~~~  255 (259)
                                    .+.+|+++++.+.      +++.+.   .+++.+++  .++.|+++..
T Consensus       195 ~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~  256 (424)
T PTZ00318        195 FFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLD  256 (424)
T ss_pred             HHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeC
Confidence                          2578999999862      122211   12333444  4577777754

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.77  E-value=3.4e-18  Score=143.01  Aligned_cols=159  Identities=25%  Similarity=0.418  Sum_probs=106.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+|||+||+|+++|..|++.|.+|+|||+.+.+||.+.+.         ..                          
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------ip--------------------------  187 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG---------IP--------------------------  187 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec---------CC--------------------------
Confidence            3689999999999999999999999999999998888776541         00                          


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .+              ..+  .++.....+.+.+.+++  +++++.+.. ..        ....     ....||.||+|
T Consensus       188 ~~--------------~~~--~~~~~~~~~~~~~~gv~--~~~~~~v~~-~~--------~~~~-----~~~~~d~vvlA  235 (471)
T PRK12810        188 DF--------------KLE--KEVIDRRIELMEAEGIE--FRTNVEVGK-DI--------TAEE-----LLAEYDAVFLG  235 (471)
T ss_pred             cc--------------cCC--HHHHHHHHHHHHhCCcE--EEeCCEECC-cC--------CHHH-----HHhhCCEEEEe
Confidence            00              001  34455555566778888  887765521 10        0010     12479999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccC-------------CCCCCCCCCeEEEEccCcCHHHHHHHHhcccC-eEEEEe
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY-------------RIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIAS  227 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~-------------~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~-~v~~~~  227 (259)
                      ||.. .++.+.++|.+. .+. .....+             .......+++|+|||+|++|+|+|..+.+.+. +|+.+.
T Consensus       236 tGa~-~~~~l~ipG~~~-~gV-~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~  312 (471)
T PRK12810        236 TGAY-KPRDLGIPGRDL-DGV-HFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRD  312 (471)
T ss_pred             cCCC-CCCcCCCCCccC-CCc-EEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcc
Confidence            9952 366677787543 221 111100             11123457899999999999999998877764 788766


Q ss_pred             cCC
Q 024975          228 RSV  230 (259)
Q Consensus       228 r~~  230 (259)
                      +.+
T Consensus       313 ~~~  315 (471)
T PRK12810        313 IMP  315 (471)
T ss_pred             ccC
Confidence            554

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.75  E-value=4e-19  Score=144.28  Aligned_cols=153  Identities=29%  Similarity=0.404  Sum_probs=85.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC--------ceeeeCC-CCC-CCCCCC-CCCCCCcccccccccee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG--------GSWIYTS-ETE-SDPLGV-DPNRYPVHSSLYKSLRV   71 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g--------g~~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~   71 (259)
                      |||+||||||+||+||..|++.|.+|+|+|+++.+|        |.|..++ ... ...... .....+    ....+..
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f----~~~~l~~   76 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKF----LKSALKR   76 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTC----THHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHH----HHHHHhc
Confidence            799999999999999999999999999999999986        5565543 111 000000 000011    1112222


Q ss_pred             ccccccceec-C--CCCCccCCCCCCCCCCCCC---HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEe
Q 024975           72 NLPRELMGFQ-A--YPFVARNYEGSVDLRRYPG---HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK  145 (259)
Q Consensus        72 ~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~  145 (259)
                      ..+.+...|. +  .+...     ..+.+.||.   ..++...|...+.+.+++  ++++++|.++...+++.|.|.+++
T Consensus        77 f~~~d~~~ff~~~Gv~~~~-----~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~--i~~~~~V~~i~~~~~~~f~v~~~~  149 (409)
T PF03486_consen   77 FSPEDLIAFFEELGVPTKI-----EEDGRVFPKSDKASSVVDALLEELKRLGVE--IHFNTRVKSIEKKEDGVFGVKTKN  149 (409)
T ss_dssp             S-HHHHHHHHHHTT--EEE------STTEEEETT--HHHHHHHHHHHHHHHT-E--EE-S--EEEEEEETTEEEEEEETT
T ss_pred             CCHHHHHHHHHhcCCeEEE-----cCCCEECCCCCcHHHHHHHHHHHHHHcCCE--EEeCCEeeeeeecCCceeEeeccC
Confidence            2222222221 1  11111     123455553   467888999999999999  999999999998874559998843


Q ss_pred             cCCceEEEEeCEEEEccCCCCCCcc
Q 024975          146 KDDVVEEETFDAVVVCNGHFSVPRL  170 (259)
Q Consensus       146 g~~~~~~~~ad~VIlAtG~~s~~~~  170 (259)
                      +    ..+.+|.||+|||+.+.|..
T Consensus       150 ~----~~~~a~~vILAtGG~S~p~~  170 (409)
T PF03486_consen  150 G----GEYEADAVILATGGKSYPKT  170 (409)
T ss_dssp             T----EEEEESEEEE----SSSGGG
T ss_pred             c----ccccCCEEEEecCCCCcccc
Confidence            2    48999999999998777754

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.74  E-value=3.9e-17  Score=127.70  Aligned_cols=209  Identities=18%  Similarity=0.167  Sum_probs=134.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC-CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccce-eccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLR-VNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   79 (259)
                      .+|++.||.||+-|++|..|.+.+ .+++.+||.+.+.  |+.         ++.-....+.-.....+. ...|...+.
T Consensus         5 ~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~--WHp---------GmllegstlQv~FlkDLVTl~~PTs~yS   73 (436)
T COG3486           5 VLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS--WHP---------GMLLEGSTLQVPFLKDLVTLVDPTSPYS   73 (436)
T ss_pred             ceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCC--cCC---------CcccCCccccccchhhhccccCCCCchH
Confidence            479999999999999999999875 7899999987652  332         111111111211222222 223333333


Q ss_pred             ecCCCCCcc-CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCc-EEEEEEecCCceEEEEeCE
Q 024975           80 FQAYPFVAR-NYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDA  157 (259)
Q Consensus        80 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~~ad~  157 (259)
                      |..+-..-. ...+-.....+++|.++.+|++|.+..+ ..  ++++++|++|...+.+. ........++  ..++|+.
T Consensus        74 FLNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~--~rfg~~V~~i~~~~~d~~~~~~~~t~~~--~~y~ar~  148 (436)
T COG3486          74 FLNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQL-PS--LRFGEEVTDISSLDGDAVVRLFVVTANG--TVYRARN  148 (436)
T ss_pred             HHHHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhhC-Cc--cccCCeeccccccCCcceeEEEEEcCCC--cEEEeee
Confidence            332221110 0011123456789999999999999888 44  89999999885544332 3322222121  2899999


Q ss_pred             EEEccCCCCCCccCCCCCCCCCC-CceEEcccCCCC-CCCCC-CeEEEEccCcCHHHHHHHHhcc----cCeEEEEecCC
Q 024975          158 VVVCNGHFSVPRLAQVPGIDSWP-GKQMHSHNYRIP-NPFQD-QVVILIGHYASGLDIKRDLAGF----AKEVHIASRSV  230 (259)
Q Consensus       158 VIlAtG~~s~~~~~~~~g~~~~~-~~~~~~~~~~~~-~~~~~-~~v~viG~G~~a~e~a~~l~~~----~~~v~~~~r~~  230 (259)
                      ||+++|  ..|.+|+.  ...+. ..++|+..+... ..... ++|+|||+|.||.|+...|...    ..++.|+.|+.
T Consensus       149 lVlg~G--~~P~IP~~--f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~  224 (436)
T COG3486         149 LVLGVG--TQPYIPPC--FRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSS  224 (436)
T ss_pred             EEEccC--CCcCCChH--HhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccC
Confidence            999999  89999862  22222 367888877643 22333 4499999999999999998644    34599999999

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.72  E-value=8.2e-17  Score=134.87  Aligned_cols=159  Identities=27%  Similarity=0.416  Sum_probs=108.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      ++|+|||+|++|+++|..|++.|.+|+|||+.+.+||...+.         .                          +.
T Consensus       144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g---------i--------------------------p~  188 (485)
T TIGR01317       144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG---------I--------------------------PN  188 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc---------C--------------------------CC
Confidence            689999999999999999999999999999998888776541         0                          00


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                      +.              .+  .++.....+.+.+.+++  ++.++.+.. ..        ..+.     ....||.||+||
T Consensus       189 ~~--------------~~--~~~~~~~~~~~~~~Gv~--~~~~~~v~~-~~--------~~~~-----~~~~~d~VilAt  236 (485)
T TIGR01317       189 MK--------------LD--KAIVDRRIDLLSAEGID--FVTNTEIGV-DI--------SADE-----LKEQFDAVVLAG  236 (485)
T ss_pred             cc--------------CC--HHHHHHHHHHHHhCCCE--EECCCEeCC-cc--------CHHH-----HHhhCCEEEEcc
Confidence            00              00  34444445566677888  888877631 10        0000     135699999999


Q ss_pred             CCCCCCccCCCCCCCCCCCceEEcc------------cC--CCCCCCCCCeEEEEccCcCHHHHHHHHhccc-CeEEEEe
Q 024975          163 GHFSVPRLAQVPGIDSWPGKQMHSH------------NY--RIPNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVHIAS  227 (259)
Q Consensus       163 G~~s~~~~~~~~g~~~~~~~~~~~~------------~~--~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~-~~v~~~~  227 (259)
                      |.. .++.+.++|.+. .+......            ..  .......+++|+|||+|++|+|+|..+.+.+ ..|++++
T Consensus       237 Ga~-~~~~l~i~G~~~-~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~  314 (485)
T TIGR01317       237 GAT-KPRDLPIPGREL-KGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFE  314 (485)
T ss_pred             CCC-CCCcCCCCCcCC-CCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEE
Confidence            952 377778888643 22211100            00  0011246799999999999999988877775 5799998


Q ss_pred             cCC
Q 024975          228 RSV  230 (259)
Q Consensus       228 r~~  230 (259)
                      +.+
T Consensus       315 ~~~  317 (485)
T TIGR01317       315 IMP  317 (485)
T ss_pred             ecC
Confidence            776

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.71  E-value=9.7e-17  Score=137.21  Aligned_cols=158  Identities=35%  Similarity=0.503  Sum_probs=105.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      ++|+|||+||+||++|..|.+.|.+|+|+|+.+.+||.+.+.         ..                          .
T Consensus       138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------ip--------------------------~  182 (564)
T PRK12771        138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG---------IP--------------------------A  182 (564)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------CC--------------------------C
Confidence            689999999999999999999999999999999998877642         00                          0


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeE-EEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEV-LNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v-~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      +              .++  .++...-.+.+.+.|++  +.+++.+ .++....               ....+|+||+|
T Consensus       183 ~--------------~~~--~~~~~~~l~~~~~~Gv~--~~~~~~~~~~~~~~~---------------~~~~~D~Vi~A  229 (564)
T PRK12771        183 Y--------------RLP--REVLDAEIQRILDLGVE--VRLGVRVGEDITLEQ---------------LEGEFDAVFVA  229 (564)
T ss_pred             c--------------cCC--HHHHHHHHHHHHHCCCE--EEeCCEECCcCCHHH---------------HHhhCCEEEEe
Confidence            0              011  34444444556678887  7777654 2221110               01248999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcc----cCCCCCCCCCCeEEEEccCcCHHHHHHHHhccc-CeEEEEecCC
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSH----NYRIPNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSV  230 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~-~~v~~~~r~~  230 (259)
                      ||.. .+..+.+++... .+......    .........+++++|+|+|.+++|.+..+.+.+ ..|++++|.+
T Consensus       230 tG~~-~~~~~~i~g~~~-~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~  301 (564)
T PRK12771        230 IGAQ-LGKRLPIPGEDA-AGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT  301 (564)
T ss_pred             eCCC-CCCcCCCCCCcc-CCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence            9963 233445666432 22211110    011112345789999999999999999888887 6799999987

>PRK13984 putative oxidoreductase; Provisional

Probab=99.71  E-value=1e-16  Score=138.35  Aligned_cols=156  Identities=30%  Similarity=0.474  Sum_probs=104.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+|||+|++|+++|..|.++|++|+|+|+.+.+||.+.+.                                     
T Consensus       283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~-------------------------------------  325 (604)
T PRK13984        283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG-------------------------------------  325 (604)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec-------------------------------------
Confidence            4689999999999999999999999999999999888876541                                     


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                       .+.           ...+  .++.....+.+.+.+++  ++.++.|..-         +..+.     ....||+||+|
T Consensus       326 -i~~-----------~~~~--~~~~~~~~~~~~~~gv~--~~~~~~v~~~---------~~~~~-----~~~~yD~vilA  375 (604)
T PRK13984        326 -IPS-----------YRLP--DEALDKDIAFIEALGVK--IHLNTRVGKD---------IPLEE-----LREKHDAVFLS  375 (604)
T ss_pred             -CCc-----------ccCC--HHHHHHHHHHHHHCCcE--EECCCEeCCc---------CCHHH-----HHhcCCEEEEE
Confidence             000           0001  34444445566677888  8888766320         01111     13579999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCCC----------CCCCCCCeEEEEccCcCHHHHHHHHhccc------CeEEE
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRI----------PNPFQDQVVILIGHYASGLDIKRDLAGFA------KEVHI  225 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~----------~~~~~~~~v~viG~G~~a~e~a~~l~~~~------~~v~~  225 (259)
                      ||. ..++.+.++|... .+ ......+..          .....+++|+|||+|.+|+|+|..+.+.+      .+|++
T Consensus       376 tGa-~~~r~l~i~G~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v  452 (604)
T PRK13984        376 TGF-TLGRSTRIPGTDH-PD-VIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKV  452 (604)
T ss_pred             cCc-CCCccCCCCCcCC-cC-eEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEE
Confidence            995 3467777888643 11 111111110          01123589999999999999999998774      36787


Q ss_pred             Ee
Q 024975          226 AS  227 (259)
Q Consensus       226 ~~  227 (259)
                      +.
T Consensus       453 ~~  454 (604)
T PRK13984        453 TS  454 (604)
T ss_pred             ec
Confidence            74

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.70  E-value=4.2e-16  Score=127.32  Aligned_cols=42  Identities=33%  Similarity=0.373  Sum_probs=38.3

Q ss_pred             CCeEEEECCChHHHHHHHHHH-HcCCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELL-REGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~-~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      .++|+||||||+|+++|.+|+ +.|++|+|||+.+.+||.+++
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~   81 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY   81 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence            468999999999999999875 579999999999999999987

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.70  E-value=1.1e-16  Score=139.54  Aligned_cols=39  Identities=28%  Similarity=0.322  Sum_probs=34.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS   40 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~   40 (259)
                      .++|+||||||+|+++|++|++.|++|+|||+.+..|+.
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP  421 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence            478999999999999999999999999999997654443

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.69  E-value=1.2e-16  Score=130.02  Aligned_cols=163  Identities=19%  Similarity=0.239  Sum_probs=104.4

Q ss_pred             eEEEECCChHHHHHHHHHHHc---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            4 HVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~---g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      +|||||||++|+.+|..|.++   +.+|+|+|+++..    .+                       ...           
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~----~~-----------------------~~~-----------   42 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT----PY-----------------------SGM-----------   42 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC----cc-----------------------cch-----------
Confidence            589999999999999999643   6799999997532    00                       000           


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                        .+...        ...+ ..+++...+.+.+.+.+++  ++. .+|++++... +  +|.+.++.    .+.||+||+
T Consensus        43 --~~~~~--------~g~~-~~~~~~~~~~~~~~~~gv~--~~~-~~v~~id~~~-~--~V~~~~g~----~~~yD~Lvi  101 (364)
T TIGR03169        43 --LPGMI--------AGHY-SLDEIRIDLRRLARQAGAR--FVI-AEATGIDPDR-R--KVLLANRP----PLSYDVLSL  101 (364)
T ss_pred             --hhHHH--------heeC-CHHHhcccHHHHHHhcCCE--EEE-EEEEEEeccc-C--EEEECCCC----cccccEEEE
Confidence              00000        0000 0134444556666677887  655 5899998764 3  56666654    699999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCCceEE---ccc----CCC-C-CCCCCCeEEEEccCcCHHHHHHHHhcc----c--CeEEE
Q 024975          161 CNGHFSVPRLAQVPGIDSWPGKQMH---SHN----YRI-P-NPFQDQVVILIGHYASGLDIKRDLAGF----A--KEVHI  225 (259)
Q Consensus       161 AtG~~s~~~~~~~~g~~~~~~~~~~---~~~----~~~-~-~~~~~~~v~viG~G~~a~e~a~~l~~~----~--~~v~~  225 (259)
                      |||  +.+..|.+||..........   ...    ... . .....++++|+|+|.+|+|+|..|.+.    +  .+|++
T Consensus       102 AtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~l  179 (364)
T TIGR03169       102 DVG--STTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTL  179 (364)
T ss_pred             ccC--CCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEE
Confidence            999  78888888885431100000   000    000 0 012357899999999999999999743    3  47999


Q ss_pred             Ee
Q 024975          226 AS  227 (259)
Q Consensus       226 ~~  227 (259)
                      +.
T Consensus       180 i~  181 (364)
T TIGR03169       180 IA  181 (364)
T ss_pred             Ee
Confidence            93

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=99.65  E-value=1.5e-15  Score=121.29  Aligned_cols=162  Identities=19%  Similarity=0.317  Sum_probs=114.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      ..++|||+|++|..|+..+++.|.  +++++-+...+    .+.                 +. ..+.+....       
T Consensus        75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~----pyd-----------------r~-~Ls~~~~~~-------  125 (478)
T KOG1336|consen   75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL----PYD-----------------RA-RLSKFLLTV-------  125 (478)
T ss_pred             ceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC----ccc-----------------ch-hcccceeec-------
Confidence            579999999999999999999875  67766544321    000                 00 000000000       


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                                           ...+.....++.++.+++  +++++.|++++...   -+|.+.+|.    .+.+++++|
T Consensus       126 ---------------------~~~~a~r~~e~Yke~gIe--~~~~t~v~~~D~~~---K~l~~~~Ge----~~kys~Lil  175 (478)
T KOG1336|consen  126 ---------------------GEGLAKRTPEFYKEKGIE--LILGTSVVKADLAS---KTLVLGNGE----TLKYSKLII  175 (478)
T ss_pred             ---------------------cccccccChhhHhhcCce--EEEcceeEEeeccc---cEEEeCCCc----eeecceEEE
Confidence                                 022223334455678899  99999999998764   567777765    899999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCCceEEcccCCCC--------CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP--------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       161 AtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |||  +.++.|++||...   .  ....+...        ......+|+++|+|+.++|++.+|...+.+||++++.+
T Consensus       176 ATG--s~~~~l~~pG~~~---~--nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~  246 (478)
T KOG1336|consen  176 ATG--SSAKTLDIPGVEL---K--NVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP  246 (478)
T ss_pred             eec--CccccCCCCCccc---c--ceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc
Confidence            999  7899999999873   1  11112211        11246779999999999999999998899999999999

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=99.65  E-value=3.7e-15  Score=106.23  Aligned_cols=138  Identities=25%  Similarity=0.422  Sum_probs=88.2

Q ss_pred             EEECCChHHHHHHHHHHHc-----CCcEEEEeeCCCcCceeeeCCC-CCCCCCCCCCCCCCcc-----ccccccceeccc
Q 024975            6 AVIGAGAAGLVVGHELLRE-----GHTVVVYEKGEQVGGSWIYTSE-TESDPLGVDPNRYPVH-----SSLYKSLRVNLP   74 (259)
Q Consensus         6 ~IIG~G~~Gl~~a~~L~~~-----g~~v~v~e~~~~~gg~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~   74 (259)
                      +|||+|++|++++.+|.+.     ..+|+|||+++. |....+... .....++.........     ...+.|+..+..
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~   79 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA   79 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence            6999999999999999987     469999999654 533333222 1111111111111110     111222222111


Q ss_pred             cccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCceeEEeceeEEEEEEeCCCcEEEEEEecCC
Q 024975           75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF------GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD  148 (259)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~  148 (259)
                      .+              ........|++|..+.+||.+.+...      ++. +.+...+|++++..+ +.|.+.+.+|. 
T Consensus        80 ~~--------------~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~-v~~~~~~V~~i~~~~-~~~~v~~~~g~-  142 (156)
T PF13454_consen   80 DE--------------AEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGIT-VRHVRAEVVDIRRDD-DGYRVVTADGQ-  142 (156)
T ss_pred             cc--------------ccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcE-EEEEeeEEEEEEEcC-CcEEEEECCCC-
Confidence            00              01234678999999999999887653      333 234577999999987 67889888876 


Q ss_pred             ceEEEEeCEEEEccCC
Q 024975          149 VVEEETFDAVVVCNGH  164 (259)
Q Consensus       149 ~~~~~~ad~VIlAtG~  164 (259)
                         .+.||.||+|||+
T Consensus       143 ---~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  143 ---SIRADAVVLATGH  155 (156)
T ss_pred             ---EEEeCEEEECCCC
Confidence               7899999999995

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.65  E-value=1.4e-15  Score=124.78  Aligned_cols=158  Identities=28%  Similarity=0.434  Sum_probs=112.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      ++|+||||||+||++|..|++.|++|+++|+.+.+||...+..                                     
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGI-------------------------------------  166 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGI-------------------------------------  166 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecC-------------------------------------
Confidence            6899999999999999999999999999999999999998730                                     


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEE-EEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVL-NARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~-~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                       |             .|.-..++.+...+++.+.|++  ++.++++- .+...          .     ..-.+|.|++|
T Consensus       167 -P-------------~~kl~k~i~d~~i~~l~~~Gv~--~~~~~~vG~~it~~----------~-----L~~e~Dav~l~  215 (457)
T COG0493         167 -P-------------DFKLPKDILDRRLELLERSGVE--FKLNVRVGRDITLE----------E-----LLKEYDAVFLA  215 (457)
T ss_pred             -c-------------hhhccchHHHHHHHHHHHcCeE--EEEcceECCcCCHH----------H-----HHHhhCEEEEe
Confidence             0             0111166777777888888887  88887654 22211          1     12345999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCc-----------eEEcccCC--CCCCCCCCeEEEEccCcCHHHHHHHHhcccC-eEEEEe
Q 024975          162 NGHFSVPRLAQVPGIDSWPGK-----------QMHSHNYR--IPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIAS  227 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~-----------~~~~~~~~--~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~-~v~~~~  227 (259)
                      +|. ..|+...++|.+.- +.           ......+.  ......+++|+|||+|.|++|++....+.|. +|+.++
T Consensus       216 ~G~-~~~~~l~i~g~d~~-gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~  293 (457)
T COG0493         216 TGA-GKPRPLDIPGEDAK-GVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFY  293 (457)
T ss_pred             ccc-cCCCCCCCCCcCCC-cchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEec
Confidence            997 57888888887531 10           00000011  1111234999999999999999998888875 788887


Q ss_pred             cCC
Q 024975          228 RSV  230 (259)
Q Consensus       228 r~~  230 (259)
                      |..
T Consensus       294 ~~~  296 (457)
T COG0493         294 RED  296 (457)
T ss_pred             ccc
Confidence            544

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.62  E-value=8.5e-15  Score=112.52  Aligned_cols=142  Identities=23%  Similarity=0.125  Sum_probs=88.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+||+||||||+|+++|+.|++.|++|+|+|+...+|+...-.        +...............+..         .
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~g--------g~~~~~~~v~~~~~~~l~~---------~   87 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGG--------GMLFNKIVVQEEADEILDE---------F   87 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccC--------ccccccccchHHHHHHHHH---------C
Confidence            5899999999999999999999999999999998887653211        0000000000000000100         0


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC-CcEEEEEEe------cC-CceEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRK------KD-DVVEEE  153 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~------g~-~~~~~~  153 (259)
                      ..++...     ........+..+...|.+.+.+.+++  ++.+++|+++...++ ..+.+.+..      +. .....+
T Consensus        88 gv~~~~~-----~~g~~~vd~~~l~~~L~~~A~~~Gv~--I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i  160 (257)
T PRK04176         88 GIRYKEV-----EDGLYVADSVEAAAKLAAAAIDAGAK--IFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTI  160 (257)
T ss_pred             CCCceee-----cCcceeccHHHHHHHHHHHHHHcCCE--EEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEE
Confidence            1111110     01111234578888888888888999  999999999987653 223333321      10 123579


Q ss_pred             EeCEEEEccCCCCC
Q 024975          154 TFDAVVVCNGHFSV  167 (259)
Q Consensus       154 ~ad~VIlAtG~~s~  167 (259)
                      .+++||+|||+++.
T Consensus       161 ~Ak~VI~ATG~~a~  174 (257)
T PRK04176        161 EAKAVVDATGHDAE  174 (257)
T ss_pred             EcCEEEEEeCCCcH
Confidence            99999999997653

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.60  E-value=2e-14  Score=113.73  Aligned_cols=147  Identities=23%  Similarity=0.244  Sum_probs=87.5

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCC--CCCCCCCCCCCCccccccccceecccccccee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      +||+||||||+|+++|..|++.|++|+|+|+.+.++..+....-..  ...+...... ...  ............  ..
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~--~~~~~~~~~~~~--~~   75 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL-IVN--LVRGARFFSPNG--DS   75 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh-hhh--heeeEEEEcCCC--cE
Confidence            6999999999999999999999999999999977653221100000  0000000000 000  000000000000  00


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                      ...+.       ........++.++.+.|.+.+.+.+++  ++++++|+++...+ +.+.+.+.++.   ..+++|+||+
T Consensus        76 ~~~~~-------~~~~~~~i~r~~l~~~l~~~~~~~gv~--~~~~~~v~~~~~~~-~~~~~~~~~~~---~~~~a~~vv~  142 (295)
T TIGR02032        76 VEIPI-------ETELAYVIDRDAFDEQLAERAQEAGAE--LRLGTTVLDVEIHD-DRVVVIVRGGE---GTVTAKIVIG  142 (295)
T ss_pred             EEecc-------CCCcEEEEEHHHHHHHHHHHHHHcCCE--EEeCcEEeeEEEeC-CEEEEEEcCcc---EEEEeCEEEE
Confidence            00000       011112245688889999999888998  99999999998876 55666554432   4789999999


Q ss_pred             ccCCCCC
Q 024975          161 CNGHFSV  167 (259)
Q Consensus       161 AtG~~s~  167 (259)
                      |+|.++.
T Consensus       143 a~G~~s~  149 (295)
T TIGR02032       143 ADGSRSI  149 (295)
T ss_pred             CCCcchH
Confidence            9997653

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.60  E-value=2e-14  Score=110.10  Aligned_cols=141  Identities=20%  Similarity=0.109  Sum_probs=87.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+||+||||||+|+++|+.|+++|.+|+|+||+..+|+.....        +...............+         .-.
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~g--------g~~~~~~~~~~~~~~~l---------~~~   83 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGG--------GMLFSKIVVEKPAHEIL---------DEF   83 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCC--------CcceecccccchHHHHH---------HHC
Confidence            5899999999999999999999999999999999887543211        00000000000000000         001


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC--cEEEEEEe------cC-CceEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN--KWKVKSRK------KD-DVVEE  152 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~--~~~v~~~~------g~-~~~~~  152 (259)
                      ..++...     ........+.++.+.|.+.+.+.+++  ++.++.|.++...++.  ...+.++.      +. .....
T Consensus        84 gi~~~~~-----~~g~~~~~~~el~~~L~~~a~e~GV~--I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~  156 (254)
T TIGR00292        84 GIRYEDE-----GDGYVVADSAEFISTLASKALQAGAK--IFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLT  156 (254)
T ss_pred             CCCeeec-----cCceEEeeHHHHHHHHHHHHHHcCCE--EECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEE
Confidence            1121111     11112234578888888888889998  9999999999876632  22333321      10 12357


Q ss_pred             EEeCEEEEccCCCC
Q 024975          153 ETFDAVVVCNGHFS  166 (259)
Q Consensus       153 ~~ad~VIlAtG~~s  166 (259)
                      +.++.||.|||+.+
T Consensus       157 i~Ak~VVdATG~~a  170 (254)
T TIGR00292       157 QRSRVVVDATGHDA  170 (254)
T ss_pred             EEcCEEEEeecCCc
Confidence            99999999999744

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.59  E-value=1.7e-14  Score=118.52  Aligned_cols=147  Identities=22%  Similarity=0.242  Sum_probs=92.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccc----eeccccc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSL----RVNLPRE   76 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~   76 (259)
                      |++||+||||||+|++||+.|++.|.+|+|+|+...+|....-...       ..+..   ........    .......
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~-------~~~~~---l~~l~~~~~~~i~~~v~~~   71 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGG-------LSPRA---LEELIPDFDEEIERKVTGA   71 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccce-------echhh---HHHhCCCcchhhheeeeee
Confidence            5799999999999999999999999999999999888743322000       00000   00000000    0000000


Q ss_pred             cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (259)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad  156 (259)
                      ...+........   ..........+..|.++|.+.+.+.|.+  +..+++++.+..++ +.+.+....++   ..++++
T Consensus        72 ~~~~~~~~~~~~---~~~~~~y~v~R~~fd~~La~~A~~aGae--~~~~~~~~~~~~~~-~~~~~~~~~~~---~e~~a~  142 (396)
T COG0644          72 RIYFPGEKVAIE---VPVGEGYIVDRAKFDKWLAERAEEAGAE--LYPGTRVTGVIRED-DGVVVGVRAGD---DEVRAK  142 (396)
T ss_pred             EEEecCCceEEe---cCCCceEEEEhHHhhHHHHHHHHHcCCE--EEeceEEEEEEEeC-CcEEEEEEcCC---EEEEcC
Confidence            000000000000   0001112235688999999999999999  99999999999887 55665555544   589999


Q ss_pred             EEEEccCCCC
Q 024975          157 AVVVCNGHFS  166 (259)
Q Consensus       157 ~VIlAtG~~s  166 (259)
                      +||.|+|..+
T Consensus       143 ~vI~AdG~~s  152 (396)
T COG0644         143 VVIDADGVNS  152 (396)
T ss_pred             EEEECCCcch
Confidence            9999999644

>PRK06847 hypothetical protein; Provisional

Probab=99.58  E-value=2.5e-14  Score=117.09  Aligned_cols=158  Identities=21%  Similarity=0.186  Sum_probs=91.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCccccccccceeccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (259)
                      ++||+||||||+|+++|..|.+.|++|+|+|+.+.+.   ......++..  ....+.... ..........+...... 
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~-~~~~~~~~~~~~~~~~~-   81 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDE-CLEAGFGFDGVDLFDPD-   81 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHH-HHHhCCCccceEEECCC-
Confidence            6899999999999999999999999999999986542   1111111000  000000000 00000000000000000 


Q ss_pred             cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (259)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad  156 (259)
                      ...+..++..... ...........+.++.++|.+.+.+.+++  ++++++|++++..+ +.+.+.+.++.    .+.+|
T Consensus        82 g~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~~~v~~~~g~----~~~ad  153 (375)
T PRK06847         82 GTLLAELPTPRLA-GDDLPGGGGIMRPALARILADAARAAGAD--VRLGTTVTAIEQDD-DGVTVTFSDGT----TGRYD  153 (375)
T ss_pred             CCEEEecCccccc-ccCCCCcccCcHHHHHHHHHHHHHHhCCE--EEeCCEEEEEEEcC-CEEEEEEcCCC----EEEcC
Confidence            0000011100000 00001122345688899999998888988  99999999998765 66788877654    78999


Q ss_pred             EEEEccCCCCCCc
Q 024975          157 AVVVCNGHFSVPR  169 (259)
Q Consensus       157 ~VIlAtG~~s~~~  169 (259)
                      .||+|+|.+|..+
T Consensus       154 ~vI~AdG~~s~~r  166 (375)
T PRK06847        154 LVVGADGLYSKVR  166 (375)
T ss_pred             EEEECcCCCcchh
Confidence            9999999877554

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=99.57  E-value=6.3e-14  Score=108.73  Aligned_cols=147  Identities=22%  Similarity=0.340  Sum_probs=95.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      .+.|+|||+||||+.+|..|.++  +.+|.|+|+.+.+.|..++.         ..|                       
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG---------VAP-----------------------   67 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG---------VAP-----------------------   67 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec---------cCC-----------------------
Confidence            46899999999999999999985  68999999999999998872         111                       


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeE-EEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEV-LNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v-~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                                        ..|--......+...+++....  +.-+.+| .++.          ++.     -.-.+|.|
T Consensus        68 ------------------DHpEvKnvintFt~~aE~~rfs--f~gNv~vG~dvs----------l~e-----L~~~ydav  112 (468)
T KOG1800|consen   68 ------------------DHPEVKNVINTFTKTAEHERFS--FFGNVKVGRDVS----------LKE-----LTDNYDAV  112 (468)
T ss_pred             ------------------CCcchhhHHHHHHHHhhccceE--EEecceeccccc----------HHH-----HhhcccEE
Confidence                              0111133444555555554444  4444443 2221          111     13468999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCCceEEcc--cCC--------CCCCCCCCeEEEEccCcCHHHHHHHHh
Q 024975          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSH--NYR--------IPNPFQDQVVILIGHYASGLDIKRDLA  217 (259)
Q Consensus       159 IlAtG~~s~~~~~~~~g~~~~~~~~~~~~--~~~--------~~~~~~~~~v~viG~G~~a~e~a~~l~  217 (259)
                      |+|.|+ ..++..++||.+. .+......  .+.        ...+....+|+|||.|+.|+|+|+.|.
T Consensus       113 vLaYGa-~~dR~L~IPGe~l-~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLl  179 (468)
T KOG1800|consen  113 VLAYGA-DGDRRLDIPGEEL-SGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILL  179 (468)
T ss_pred             EEEecC-CCCcccCCCCccc-ccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhh
Confidence            999997 5678888998762 11111000  000        112234688999999999999999985

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.56  E-value=5.7e-14  Score=116.35  Aligned_cols=154  Identities=23%  Similarity=0.238  Sum_probs=86.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCC-CCCCC---CCCcccc-ccccceeccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL-GVDPN---RYPVHSS-LYKSLRVNLPRE   76 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~-~~~~~---~~~~~~~-~~~~~~~~~~~~   76 (259)
                      ++||+||||||+|++||+.|+++|++|+|+||.+.+|.............. ...+.   ...+... ....+.......
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKS   84 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCC
Confidence            489999999999999999999999999999998877532110000000000 00000   0000000 000000000000


Q ss_pred             cceecCCCCCccCCCCCCCCCCC-CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975           77 LMGFQAYPFVARNYEGSVDLRRY-PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (259)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a  155 (259)
                      ...   ..+..... .......| ..+.+|.++|.+.+.+.|++  ++.+++|+++...+ +.+.....++.    .+.+
T Consensus        85 ~~~---~~~~~~~~-~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~--i~~~~~V~~i~~~~-g~v~~v~~~g~----~i~A  153 (428)
T PRK10157         85 AMT---MDYCNGDE-TSPSQRSYSVLRSKFDAWLMEQAEEAGAQ--LITGIRVDNLVQRD-GKVVGVEADGD----VIEA  153 (428)
T ss_pred             cee---eccccccc-cCCCCCceeeEHHHHHHHHHHHHHHCCCE--EECCCEEEEEEEeC-CEEEEEEcCCc----EEEC
Confidence            000   01100000 00111122 35788999999999889999  99999999998765 44433333332    6899


Q ss_pred             CEEEEccCCCC
Q 024975          156 DAVVVCNGHFS  166 (259)
Q Consensus       156 d~VIlAtG~~s  166 (259)
                      +.||+|+|.++
T Consensus       154 ~~VI~A~G~~s  164 (428)
T PRK10157        154 KTVILADGVNS  164 (428)
T ss_pred             CEEEEEeCCCH
Confidence            99999999654

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.54  E-value=9.3e-14  Score=118.54  Aligned_cols=160  Identities=19%  Similarity=0.117  Sum_probs=91.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCce---eeeCCCCC--CCCCCCCCCCCCcc-ccccccceecccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPVH-SSLYKSLRVNLPR   75 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~---~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~   75 (259)
                      ++||+||||||+|+++|..|.+.|++|+|+|+.+.+...   +...+...  ....+....  +.. ......+..... 
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~--l~~~~~~~~~~~~~~~-   86 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADE--VLPHTTPNHGMRFLDA-   86 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhH--HHhhcccCCceEEEcC-
Confidence            579999999999999999999999999999998765321   11110000  000010000  000 000000000000 


Q ss_pred             ccceecCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEE
Q 024975           76 ELMGFQAYPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE  153 (259)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~  153 (259)
                      ....+..++....  ....+. .....+..+.+.|.+.+.+. +++  ++++++|++++.++ +.+++.+++.+++..++
T Consensus        87 ~g~~~~~~~~~~~--~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~--v~~g~~v~~i~~~~-~~v~v~~~~~~G~~~~i  161 (538)
T PRK06183         87 KGRCLAEIARPST--GEFGWPRRNAFHQPLLEAVLRAGLARFPHVR--VRFGHEVTALTQDD-DGVTVTLTDADGQRETV  161 (538)
T ss_pred             CCCEEEEEcCCCC--CCCCCChhccCChHHHHHHHHHHHHhCCCcE--EEcCCEEEEEEEcC-CeEEEEEEcCCCCEEEE
Confidence            0000111111000  000011 11224466777888877665 788  99999999999876 67888887544444689


Q ss_pred             EeCEEEEccCCCCCCc
Q 024975          154 TFDAVVVCNGHFSVPR  169 (259)
Q Consensus       154 ~ad~VIlAtG~~s~~~  169 (259)
                      ++|+||.|+|..|..+
T Consensus       162 ~ad~vVgADG~~S~vR  177 (538)
T PRK06183        162 RARYVVGCDGANSFVR  177 (538)
T ss_pred             EEEEEEecCCCchhHH
Confidence            9999999999877654

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.53  E-value=1.9e-13  Score=98.63  Aligned_cols=137  Identities=20%  Similarity=0.195  Sum_probs=85.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccc-cceec
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE-LMGFQ   81 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   81 (259)
                      -||+||||||+||+||++|++.|.+|+|||++-.+||...--        +.          .++.+.-..+.+ ...-.
T Consensus        31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~G--------Gm----------lf~~iVv~~~a~~iL~e~   92 (262)
T COG1635          31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGG--------GM----------LFNKIVVREEADEILDEF   92 (262)
T ss_pred             ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccccc--------cc----------ccceeeecchHHHHHHHh
Confidence            589999999999999999999999999999998888665432        11          111111111110 00001


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC-cEEEEEE------ecC-CceEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSR------KKD-DVVEEE  153 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~------~g~-~~~~~~  153 (259)
                      ..++...     .+...-....++...+...+.+.+.+  ++....|.++...++. .-.|.++      .+- --...+
T Consensus        93 gI~ye~~-----e~g~~v~ds~e~~skl~~~a~~aGak--i~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i  165 (262)
T COG1635          93 GIRYEEE-----EDGYYVADSAEFASKLAARALDAGAK--IFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTI  165 (262)
T ss_pred             CCcceec-----CCceEEecHHHHHHHHHHHHHhcCce--eeecceEEEEEEecCCceEEEEEecchhhhcccccCccee
Confidence            1222211     11111123467777888888888988  9999999999877642 2122221      110 011368


Q ss_pred             EeCEEEEccCC
Q 024975          154 TFDAVVVCNGH  164 (259)
Q Consensus       154 ~ad~VIlAtG~  164 (259)
                      ++++||.||||
T Consensus       166 ~a~~VvDaTGH  176 (262)
T COG1635         166 RAKAVVDATGH  176 (262)
T ss_pred             eEEEEEeCCCC
Confidence            99999999997

>PRK08244 hypothetical protein; Provisional

Probab=99.53  E-value=3e-13  Score=114.38  Aligned_cols=151  Identities=25%  Similarity=0.250  Sum_probs=89.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCccccccccceecc-c
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL-P   74 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~   74 (259)
                      |.+||+||||||+|+++|..|.+.|++|+|+|+.+.+.   ......++..  ....+.           .+.+.... +
T Consensus         1 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl-----------~~~l~~~~~~   69 (493)
T PRK08244          1 MKYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGL-----------LERFLEKGRK   69 (493)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCc-----------HHHHHhhccc
Confidence            57899999999999999999999999999999986542   1111110000  000010           00000000 0


Q ss_pred             cccceecC----CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCce
Q 024975           75 RELMGFQA----YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV  150 (259)
Q Consensus        75 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~  150 (259)
                      .....+..    ..+...  ..........++..+.+.|.+.+.+.+++  +++++++++++..+ +.+.+.+.+.++ .
T Consensus        70 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~q~~le~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~  143 (493)
T PRK08244         70 LPSGHFAGLDTRLDFSAL--DTSSNYTLFLPQAETEKVLEEHARSLGVE--IFRGAEVLAVRQDG-DGVEVVVRGPDG-L  143 (493)
T ss_pred             ccceEEecccccCCcccC--CCCCCcEEEecHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEcC-CeEEEEEEeCCc-c
Confidence            00000000    011000  00001111235577888888888888998  99999999998776 567777664332 2


Q ss_pred             EEEEeCEEEEccCCCCCC
Q 024975          151 EEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       151 ~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+++|+||.|+|.+|..
T Consensus       144 ~~i~a~~vVgADG~~S~v  161 (493)
T PRK08244        144 RTLTSSYVVGADGAGSIV  161 (493)
T ss_pred             EEEEeCEEEECCCCChHH
Confidence            478999999999987643

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.53  E-value=4e-14  Score=116.94  Aligned_cols=161  Identities=15%  Similarity=0.154  Sum_probs=88.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-CCcc-ccccccceec--cccc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-YPVH-SSLYKSLRVN--LPRE   76 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~--~~~~   76 (259)
                      |.+||+||||||+|+++|..|.++|++|+|+|+.+..............-.....+.. ..+. -..++.+...  .+..
T Consensus         1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~   80 (405)
T PRK05714          1 MRADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS   80 (405)
T ss_pred             CCccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce
Confidence            6789999999999999999999999999999998632111000000000000000000 0000 0001111100  0000


Q ss_pred             cceecC------CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCce
Q 024975           77 LMGFQA------YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV  150 (259)
Q Consensus        77 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~  150 (259)
                      ...+.+      ..+...... .........+..+.+.|.+.+.+.+++  +++++++++++..+ +.+.|.+.++.   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~g~---  153 (405)
T PRK05714         81 EMQVWDGSGTGQIHFSAASVH-AEVLGHIVENRVVQDALLERLHDSDIG--LLANARLEQMRRSG-DDWLLTLADGR---  153 (405)
T ss_pred             eEEEEcCCCCceEEecccccC-CCccEEEEEhHHHHHHHHHHHhcCCCE--EEcCCEEEEEEEcC-CeEEEEECCCC---
Confidence            000000      000000000 000001133467777777777777888  99999999998776 66888877654   


Q ss_pred             EEEEeCEEEEccCCCCCCc
Q 024975          151 EEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       151 ~~~~ad~VIlAtG~~s~~~  169 (259)
                       .+++|.||.|+|.+|..+
T Consensus       154 -~~~a~~vVgAdG~~S~vR  171 (405)
T PRK05714        154 -QLRAPLVVAADGANSAVR  171 (405)
T ss_pred             -EEEeCEEEEecCCCchhH
Confidence             799999999999877554

>PRK10015 oxidoreductase; Provisional

Probab=99.52  E-value=4.9e-13  Score=110.74  Aligned_cols=153  Identities=20%  Similarity=0.201  Sum_probs=85.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCC-CCCCCCCCCCCCccccccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      ++||+||||||+|++||+.|++.|++|+|+||.+.+|.......... .......+.  +....   .+..........+
T Consensus         5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~--~~~~~---~i~~~~~~~~~~~   79 (429)
T PRK10015          5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPG--FAASA---PVERKVTREKISF   79 (429)
T ss_pred             ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHccc--ccccC---CccccccceeEEE
Confidence            38999999999999999999999999999999887653211000000 000000000  00000   0000000000000


Q ss_pred             c------CCCCCccCCCCCCCCCCC-CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEE
Q 024975           81 Q------AYPFVARNYEGSVDLRRY-PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE  153 (259)
Q Consensus        81 ~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~  153 (259)
                      .      ...+...... ......| ..|..|.++|.+.+.+.|++  ++.+++|+++...+ +.+.....+ +   ..+
T Consensus        80 ~~~~~~~~~~~~~~~~~-~~~~~~~~v~R~~fd~~L~~~a~~~Gv~--i~~~~~V~~i~~~~-~~v~~v~~~-~---~~i  151 (429)
T PRK10015         80 LTEESAVTLDFHREQPD-VPQHASYTVLRNRLDPWLMEQAEQAGAQ--FIPGVRVDALVREG-NKVTGVQAG-D---DIL  151 (429)
T ss_pred             EeCCCceEeecccCCCC-CCCcCceEeehhHHHHHHHHHHHHcCCE--EECCcEEEEEEEeC-CEEEEEEeC-C---eEE
Confidence            0      0001000000 0001122 35678888999999888999  99999999988765 444322222 2   379


Q ss_pred             EeCEEEEccCCCCC
Q 024975          154 TFDAVVVCNGHFSV  167 (259)
Q Consensus       154 ~ad~VIlAtG~~s~  167 (259)
                      .++.||+|+|..+.
T Consensus       152 ~A~~VI~AdG~~s~  165 (429)
T PRK10015        152 EANVVILADGVNSM  165 (429)
T ss_pred             ECCEEEEccCcchh
Confidence            99999999996543

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.52  E-value=4.6e-13  Score=109.93  Aligned_cols=147  Identities=19%  Similarity=0.226  Sum_probs=86.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeC-CCc--CceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQV--GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~-~~~--gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      |||+||||||+|+++|+.|++.|++|+|+|+. +.+  ++.... +.. ...++...  ... ...+.......+...  
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~-~~~-l~~l~i~~--~~~-~~~~~~~~~~~~~~~--   73 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIP-PCL-IEEFDIPD--SLI-DRRVTQMRMISPSRV--   73 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcC-Hhh-hhhcCCch--HHH-hhhcceeEEEcCCCc--
Confidence            79999999999999999999999999999997 221  111000 000 00000000  000 000111111111100  


Q ss_pred             ecCCCCCccCCCCCCCCCCC---CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec----CCceEE
Q 024975           80 FQAYPFVARNYEGSVDLRRY---PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK----DDVVEE  152 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g----~~~~~~  152 (259)
                          .....    ......|   ..+..|.++|.+.+.+.|++  ++. .+|+++...+ +.+.+.+.++    .++...
T Consensus        74 ----~~~~~----~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~--v~~-~~v~~v~~~~-~~~~v~~~~~~~~~~~~~~~  141 (388)
T TIGR02023        74 ----PIKVT----IPSEDGYVGMVRREVFDSYLRERAQKAGAE--LIH-GLFLKLERDR-DGVTLTYRTPKKGAGGEKGS  141 (388)
T ss_pred             ----eeeec----cCCCCCceEeeeHHHHHHHHHHHHHhCCCE--EEe-eEEEEEEEcC-CeEEEEEEeccccCCCcceE
Confidence                00000    0001112   57789999999999888998  754 4689988765 6788877652    223357


Q ss_pred             EEeCEEEEccCCCCCC
Q 024975          153 ETFDAVVVCNGHFSVP  168 (259)
Q Consensus       153 ~~ad~VIlAtG~~s~~  168 (259)
                      +++|+||.|+|..|..
T Consensus       142 i~a~~VI~AdG~~S~v  157 (388)
T TIGR02023       142 VEADVVIGADGANSPV  157 (388)
T ss_pred             EEeCEEEECCCCCcHH
Confidence            9999999999976643

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR00275 flavoprotein, HI0933 family

Probab=99.51  E-value=1.1e-13  Score=113.71  Aligned_cols=151  Identities=25%  Similarity=0.380  Sum_probs=92.7

Q ss_pred             EEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCC---Cc-c--ccccccceeccccccce
Q 024975            6 AVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRY---PV-H--SSLYKSLRVNLPRELMG   79 (259)
Q Consensus         6 ~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~---~~-~--~~~~~~~~~~~~~~~~~   79 (259)
                      +|||||++|+++|..|++.|.+|+|+|+++.+|+.+....+..++.........   .. .  ......+......+...
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~   80 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID   80 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence            699999999999999999999999999999888765544433322222111000   00 0  00011111111111111


Q ss_pred             ec-C--CCCCccCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEE
Q 024975           80 FQ-A--YPFVARNYEGSVDLRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE  153 (259)
Q Consensus        80 ~~-~--~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~  153 (259)
                      |. .  .++..     ......||   ....+.+.+.+.+++.+++  ++++++|+++...+ +.|.+.++ +    ..+
T Consensus        81 ~~~~~Gv~~~~-----~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~--i~~~~~V~~i~~~~-~~~~v~~~-~----~~i  147 (400)
T TIGR00275        81 FFESLGLELKV-----EEDGRVFPCSDSAADVLDALLNELKELGVE--ILTNSKVKSIKKDD-NGFGVETS-G----GEY  147 (400)
T ss_pred             HHHHcCCeeEE-----ecCCEeECCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEecC-CeEEEEEC-C----cEE
Confidence            10 0  11111     01223343   2467888888888888998  99999999998765 66777763 2    268


Q ss_pred             EeCEEEEccCCCCCCc
Q 024975          154 TFDAVVVCNGHFSVPR  169 (259)
Q Consensus       154 ~ad~VIlAtG~~s~~~  169 (259)
                      .+|.||+|+|.++.|.
T Consensus       148 ~ad~VIlAtG~~s~p~  163 (400)
T TIGR00275       148 EADKVILATGGLSYPQ  163 (400)
T ss_pred             EcCEEEECCCCcccCC
Confidence            9999999999876553

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.51  E-value=1.7e-13  Score=111.22  Aligned_cols=154  Identities=26%  Similarity=0.308  Sum_probs=87.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCce---eeeCCCCCCCCCCCCCCCCCccc-cccccceecc-cccc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETESDPLGVDPNRYPVHS-SLYKSLRVNL-PREL   77 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~   77 (259)
                      +||+||||||+|+++|..|+++|++|+|||+.+.+...   ....++..          ..+.. .....+.... +...
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~----------~~l~~lgl~~~~~~~~~~~~~   71 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSL----------RILQRLGLLDEILARGSPHEV   71 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHH----------HHHHHTTEHHHHHHHSEEECE
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccc----------cccccccchhhhhhhcccccc
Confidence            79999999999999999999999999999998654210   00000000          00000 0000000000 0000


Q ss_pred             ce--e-cC---------CCCCccCC--CCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEE
Q 024975           78 MG--F-QA---------YPFVARNY--EGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKS  143 (259)
Q Consensus        78 ~~--~-~~---------~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~  143 (259)
                      ..  + ..         .+......  ...........+.++.+.|.+.+.+.+++  +.++++++++..++ +.+.+.+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~~~~d~-~~~~~~~  148 (356)
T PF01494_consen   72 MRIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVD--IRFGTRVVSIEQDD-DGVTVVV  148 (356)
T ss_dssp             EEEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEE--EEESEEEEEEEEET-TEEEEEE
T ss_pred             eeeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhh--heeeeecccccccc-ccccccc
Confidence            00  0 00         00000000  00111112235678999999999999988  99999999999876 5666666


Q ss_pred             Eec-CCceEEEEeCEEEEccCCCCCCc
Q 024975          144 RKK-DDVVEEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       144 ~~g-~~~~~~~~ad~VIlAtG~~s~~~  169 (259)
                      ... ++..+.+++|.||.|+|.+|..+
T Consensus       149 ~~~~~g~~~~i~adlvVgADG~~S~vR  175 (356)
T PF01494_consen  149 RDGEDGEEETIEADLVVGADGAHSKVR  175 (356)
T ss_dssp             EETCTCEEEEEEESEEEE-SGTT-HHH
T ss_pred             ccccCCceeEEEEeeeecccCcccchh
Confidence            665 35556899999999999877543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.50  E-value=3.6e-14  Score=105.97  Aligned_cols=148  Identities=25%  Similarity=0.359  Sum_probs=88.5

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY   83 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (259)
                      ||+|||||++|+++|..|++.+.+++|+|+.+..+.....                     .........         .
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~---------------------~~~~~~~~~---------~   50 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGC---------------------IPSPLLVEI---------A   50 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSH---------------------HHHHHHHHH---------H
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccc---------------------ccccccccc---------c
Confidence            7999999999999999999999999999886532210000                     000000000         0


Q ss_pred             CCCccCCCCCCCCCCCCCHHHHH--H--HHHHHHHHhCCceeEEeceeEEEEEEeCCCc-----EEEEEEecCCceEEEE
Q 024975           84 PFVARNYEGSVDLRRYPGHEEVL--R--YLQNFAREFGVDQVVRLHTEVLNARLVESNK-----WKVKSRKKDDVVEEET  154 (259)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~--~--~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-----~~v~~~~g~~~~~~~~  154 (259)
                      +                ....+.  .  .+.+.+...+++  +..++++.++.... +.     +.+.... .+....+.
T Consensus        51 ~----------------~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~-~~~~~~~~~~~~~~-~~~~~~~~  110 (201)
T PF07992_consen   51 P----------------HRHEFLPARLFKLVDQLKNRGVE--IRLNAKVVSIDPES-KRVVCPAVTIQVVE-TGDGREIK  110 (201)
T ss_dssp             H----------------HHHHHHHHHHGHHHHHHHHHTHE--EEHHHTEEEEEEST-TEEEETCEEEEEEE-TTTEEEEE
T ss_pred             c----------------cccccccccccccccccccceEE--Eeeccccccccccc-cccccCcccceeec-cCCceEec
Confidence            0                001111  1  223333456787  77899999998876 42     2332222 22346899


Q ss_pred             eCEEEEccCCCCCCccCCCCCCCC-CC-CceEEcccCCCCCCCCCCeEEEEc
Q 024975          155 FDAVVVCNGHFSVPRLAQVPGIDS-WP-GKQMHSHNYRIPNPFQDQVVILIG  204 (259)
Q Consensus       155 ad~VIlAtG~~s~~~~~~~~g~~~-~~-~~~~~~~~~~~~~~~~~~~v~viG  204 (259)
                      ||+||+|||  +.+..|.+||.+. +. ........+...... .++++|+|
T Consensus       111 ~d~lviAtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~-~~~v~VvG  159 (201)
T PF07992_consen  111 YDYLVIATG--SRPRTPNIPGEEVAYFLRGVDDAQRFLELLES-PKRVAVVG  159 (201)
T ss_dssp             EEEEEEEST--EEEEEESSTTTTTECBTTSEEHHHHHHTHSST-TSEEEEES
T ss_pred             CCeeeecCc--cccceeecCCCccccccccccccccccccccc-cccccccc
Confidence            999999999  7788888888631 11 222233333333223 34999999

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK06185 hypothetical protein; Provisional

Probab=99.49  E-value=2.6e-13  Score=112.24  Aligned_cols=159  Identities=21%  Similarity=0.223  Sum_probs=84.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCce---eeeCCCCC--CCCCCCCCCCCCccccccccceeccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (259)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+.+...   ....+...  ...++...............+.......
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~   85 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR   85 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence            589999999999999999999999999999997543110   00000000  0000000000000000000010000000


Q ss_pred             cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (259)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a  155 (259)
                      ....  ..+....  .......+.++..+.+.|.+.+.+. +++  ++++++|+++...++....+.+...++ ...+.+
T Consensus        86 ~~~~--~~~~~~~--~~~~~~~~v~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~~~~~~~~v~~v~~~~~~g-~~~i~a  158 (407)
T PRK06185         86 TVTL--ADFSRLP--TPYPYIAMMPQWDFLDFLAEEASAYPNFT--LRMGAEVTGLIEEGGRVTGVRARTPDG-PGEIRA  158 (407)
T ss_pred             EEEe--cchhhcC--CCCCcEEEeehHHHHHHHHHHHhhCCCcE--EEeCCEEEEEEEeCCEEEEEEEEcCCC-cEEEEe
Confidence            0000  0110000  0001112245577888888877664 788  899999999987763333345443222 146899


Q ss_pred             CEEEEccCCCCC
Q 024975          156 DAVVVCNGHFSV  167 (259)
Q Consensus       156 d~VIlAtG~~s~  167 (259)
                      |.||.|+|.+|.
T Consensus       159 ~~vI~AdG~~S~  170 (407)
T PRK06185        159 DLVVGADGRHSR  170 (407)
T ss_pred             CEEEECCCCchH
Confidence            999999998764

>PRK06834 hypothetical protein; Provisional

Probab=99.49  E-value=5.3e-13  Score=112.15  Aligned_cols=147  Identities=18%  Similarity=0.154  Sum_probs=87.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC--ce-e-eeCCCCC--CCCCCCCCCCCCccccccccceecc-c
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG--GS-W-IYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL-P   74 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g--g~-~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~   74 (259)
                      .+||+||||||+|+++|+.|.++|++|+|+|+.+.+.  +. . ...+...  ....+           .++.+.... .
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lG-----------l~~~l~~~~~~   71 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRG-----------IADRFLAQGQV   71 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcC-----------cHHHHHhcCCc
Confidence            5899999999999999999999999999999986431  10 0 0000000  00000           011111000 0


Q ss_pred             c--ccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEE
Q 024975           75 R--ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE  152 (259)
Q Consensus        75 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~  152 (259)
                      .  .......+.+...  ..............+.+.|.+.+.+.+++  ++++++|++++..+ +.+.+.+.++.    .
T Consensus        72 ~~~~~~~~~~~~~~~~--~~~~~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~v~~~~-~~v~v~~~~g~----~  142 (488)
T PRK06834         72 AQVTGFAATRLDISDF--PTRHNYGLALWQNHIERILAEWVGELGVP--IYRGREVTGFAQDD-TGVDVELSDGR----T  142 (488)
T ss_pred             cccceeeeEecccccC--CCCCCccccccHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcC-CeEEEEECCCC----E
Confidence            0  0000000110000  00000111223467788888888888888  99999999999876 66777775543    7


Q ss_pred             EEeCEEEEccCCCCCC
Q 024975          153 ETFDAVVVCNGHFSVP  168 (259)
Q Consensus       153 ~~ad~VIlAtG~~s~~  168 (259)
                      +++|+||.|+|.+|..
T Consensus       143 i~a~~vVgADG~~S~v  158 (488)
T PRK06834        143 LRAQYLVGCDGGRSLV  158 (488)
T ss_pred             EEeCEEEEecCCCCCc
Confidence            9999999999987654

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.49  E-value=1.2e-13  Score=113.82  Aligned_cols=160  Identities=19%  Similarity=0.185  Sum_probs=88.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCc---eeeeCCCCC--CCCCCCCCCCCCccccccccceeccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (259)
                      +.||+||||||+|+++|..|.+.|++|+|+|+.+.++.   .....++..  ...++..... .........+.......
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~~~~~~~   82 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAA-RQRAVFTDHLTMMDAVD   82 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHH-HhhccCCcceEEEeCCC
Confidence            46999999999999999999999999999999876531   111111100  0000100000 00000000000000000


Q ss_pred             cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (259)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a  155 (259)
                      ...+...+.................+.++.+.|.+.+.+.+ ++  ++++++++++...+ +.+.+.+.++.    .+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~-~~v~v~~~~g~----~~~a  155 (396)
T PRK08163         83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVE--FRTSTHVVGIEQDG-DGVTVFDQQGN----RWTG  155 (396)
T ss_pred             CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcE--EEeCCEEEEEecCC-CceEEEEcCCC----EEec
Confidence            00000000000000000001112356778888888776654 77  89999999998765 66777776654    7899


Q ss_pred             CEEEEccCCCCCCc
Q 024975          156 DAVVVCNGHFSVPR  169 (259)
Q Consensus       156 d~VIlAtG~~s~~~  169 (259)
                      |.||.|+|.+|..+
T Consensus       156 d~vV~AdG~~S~~r  169 (396)
T PRK08163        156 DALIGCDGVKSVVR  169 (396)
T ss_pred             CEEEECCCcChHHH
Confidence            99999999877654

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.49  E-value=7.4e-14  Score=101.18  Aligned_cols=138  Identities=23%  Similarity=0.206  Sum_probs=76.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccc-cccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPR-ELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   80 (259)
                      .+||+||||||+||+||++|++.|++|++||++..+||.....        +.          .+..+.-..+. ....-
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~G--------g~----------lf~~iVVq~~a~~iL~e   78 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGG--------GM----------LFNKIVVQEEADEILDE   78 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS---------CT----------T---EEEETTTHHHHHH
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccccc--------cc----------ccchhhhhhhHHHHHHh
Confidence            4799999999999999999999999999999998888654321        11          11111111110 00000


Q ss_pred             cCCCCCccCCCCCCCCCCC-CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC-CcEEEEEEecC-------CceE
Q 024975           81 QAYPFVARNYEGSVDLRRY-PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKD-------DVVE  151 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~-------~~~~  151 (259)
                      ...++...      ....| .+..++...|...+.+.|+.  ++....|.++...++ +.-.|-++-..       --..
T Consensus        79 lgi~y~~~------~~g~~v~d~~~~~s~L~s~a~~aGak--ifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl  150 (230)
T PF01946_consen   79 LGIPYEEY------GDGYYVADSVEFTSTLASKAIDAGAK--IFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPL  150 (230)
T ss_dssp             HT---EE-------SSEEEES-HHHHHHHHHHHHHTTTEE--EEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-E
T ss_pred             CCceeEEe------CCeEEEEcHHHHHHHHHHHHhcCCCE--EEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcc
Confidence            11122111      11122 34467778887777778998  999999999987763 22222222100       0124


Q ss_pred             EEEeCEEEEccCCC
Q 024975          152 EETFDAVVVCNGHF  165 (259)
Q Consensus       152 ~~~ad~VIlAtG~~  165 (259)
                      .+++++||.||||-
T Consensus       151 ~i~ak~ViDaTGHd  164 (230)
T PF01946_consen  151 TIRAKVVIDATGHD  164 (230)
T ss_dssp             EEEESEEEE---SS
T ss_pred             eEEEeEEEeCCCCc
Confidence            79999999999973

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.49  E-value=2.2e-13  Score=112.05  Aligned_cols=154  Identities=16%  Similarity=0.195  Sum_probs=87.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC----c---e-eeeCCCCC--CCCCCCCCCCCCcccccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG----G---S-WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRV   71 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g----g---~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   71 (259)
                      ++||+||||||+|+++|+.|.++|++|+|+|+.+.+.    +   . ....+...  ...++............+..+..
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV   85 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence            4899999999999999999999999999999986432    0   0 00000000  00000000000000000000000


Q ss_pred             ccccccceecCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCce
Q 024975           72 NLPRELMGFQAYPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV  150 (259)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~  150 (259)
                      ...... ....++....    .... .....+..+.+.|.+.+.+.+++  ++++++|++++..+ +.+.+.++++.   
T Consensus        86 ~~~~~~-~~~~~~~~~~----~~~~~~~~v~~~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~~-~~v~v~~~~g~---  154 (392)
T PRK08773         86 WDAGGG-GELGFDADTL----GREQLGWIVENDLLVDRLWAALHAAGVQ--LHCPARVVALEQDA-DRVRLRLDDGR---  154 (392)
T ss_pred             EeCCCC-ceEEechhcc----CCCcCEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeEEEEEecC-CeEEEEECCCC---
Confidence            000000 0000000000    0000 11234577888888888888988  99999999998766 66778776654   


Q ss_pred             EEEEeCEEEEccCCCCC
Q 024975          151 EEETFDAVVVCNGHFSV  167 (259)
Q Consensus       151 ~~~~ad~VIlAtG~~s~  167 (259)
                       .+.+|.||.|+|.+|.
T Consensus       155 -~~~a~~vV~AdG~~S~  170 (392)
T PRK08773        155 -RLEAALAIAADGAAST  170 (392)
T ss_pred             -EEEeCEEEEecCCCch
Confidence             7899999999997664

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.49  E-value=1.1e-13  Score=102.85  Aligned_cols=153  Identities=22%  Similarity=0.289  Sum_probs=85.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCC-CCCCCCCCCCCCccccccccce-eccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLR-VNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   79 (259)
                      |.+|+|||+|++|++||+.|++.|.+|+||||+..+||+........ ..-++....  -.....+..+. .........
T Consensus         1 ~~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYf--k~~~~~F~~~Ve~~~~~glV~   78 (331)
T COG3380           1 MPSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYF--KPRDELFLRAVEALRDDGLVD   78 (331)
T ss_pred             CCcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceee--cCCchHHHHHHHHHHhCCcee
Confidence            46899999999999999999999999999999999999876542111 110111000  00000111000 000000000


Q ss_pred             -ecCCCCCccCC--CCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975           80 -FQAYPFVARNY--EGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (259)
Q Consensus        80 -~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad  156 (259)
                       +..--|.....  ....+...|..-..+....+..+  .+++  |.++++|+.+.+.+ +.|++..+++.   ....||
T Consensus        79 ~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA--tdL~--V~~~~rVt~v~~~~-~~W~l~~~~g~---~~~~~d  150 (331)
T COG3380          79 VWTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA--TDLT--VVLETRVTEVARTD-NDWTLHTDDGT---RHTQFD  150 (331)
T ss_pred             eccccccccccCCCCCCCCCCccccCcchHHHHHHHh--ccch--hhhhhhhhhheecC-CeeEEEecCCC---cccccc
Confidence             00000000000  00111111422222322223222  3556  88999999999985 89999998766   478899


Q ss_pred             EEEEccCC
Q 024975          157 AVVVCNGH  164 (259)
Q Consensus       157 ~VIlAtG~  164 (259)
                      .||+|.=.
T Consensus       151 ~vvla~PA  158 (331)
T COG3380         151 DVVLAIPA  158 (331)
T ss_pred             eEEEecCC
Confidence            99998653

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.49  E-value=3.4e-13  Score=106.31  Aligned_cols=202  Identities=19%  Similarity=0.201  Sum_probs=125.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|||+|+|.+|++++..|-..-.+|+++.+..++-    +++                          ..|+...+  
T Consensus        55 Kk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFl----FTP--------------------------LLpS~~vG--  102 (491)
T KOG2495|consen   55 KKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFL----FTP--------------------------LLPSTTVG--  102 (491)
T ss_pred             CceEEEEcCchHHHHHHHhccccccceEEeccccceE----Eee--------------------------ccCCcccc--
Confidence            4789999999999999999999999999999875431    110                          00000000  


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC--CceEEEEeCEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD--DVVEEETFDAVV  159 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~--~~~~~~~ad~VI  159 (259)
                                    +-   ....+.+-....+.+.+.. .-.+..+.++++... +...+....++  .....+.||++|
T Consensus       103 --------------Tv---e~rSIvEPIr~i~r~k~~~-~~y~eAec~~iDp~~-k~V~~~s~t~~~~~~e~~i~YDyLV  163 (491)
T KOG2495|consen  103 --------------TV---ELRSIVEPIRAIARKKNGE-VKYLEAECTKIDPDN-KKVHCRSLTADSSDKEFVIGYDYLV  163 (491)
T ss_pred             --------------ce---eehhhhhhHHHHhhccCCC-ceEEecccEeecccc-cEEEEeeeccCCCcceeeecccEEE
Confidence                          00   0044444445555444322 245677888887665 44444443333  344678999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceE---EcccC-------------CC---CCCCCCCeEEEEccCcCHHHHHHHHhcc-
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQM---HSHNY-------------RI---PNPFQDQVVILIGHYASGLDIKRDLAGF-  219 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~---~~~~~-------------~~---~~~~~~~~v~viG~G~~a~e~a~~l~~~-  219 (259)
                      +|+|  ..++.+.+||..++....-   +....             ..   .....--+++|||||++|+|+|.+|... 
T Consensus       164 iA~G--A~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi  241 (491)
T KOG2495|consen  164 IAVG--AEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFI  241 (491)
T ss_pred             Eecc--CCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHH
Confidence            9999  7899999998876422111   11111             00   0111224699999999999999999743 


Q ss_pred             -------------cCeEEEEecCC---------CcccccCCCCCCCceEe--eeeeEEeec
Q 024975          220 -------------AKEVHIASRSV---------ADETHEKQPGYDNMWLH--SMVRTKKCS  256 (259)
Q Consensus       220 -------------~~~v~~~~r~~---------~~~~~~~~~~~~~~~~~--~~v~~~~~~  256 (259)
                                   ..+||++.-.|         --++.+....+.+|.+.  +.|+.++..
T Consensus       242 ~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~  302 (491)
T KOG2495|consen  242 PEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEK  302 (491)
T ss_pred             HHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCc
Confidence                         23589998888         13344555555566654  667766654

>PRK06184 hypothetical protein; Provisional

Probab=99.48  E-value=6e-13  Score=112.79  Aligned_cols=161  Identities=20%  Similarity=0.173  Sum_probs=88.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCcee---eeCCCCC--CCCCCCCCCCCCccccccccceeccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW---IYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (259)
                      ++||+||||||+|+++|..|+++|++|+|+|+.+.+....   ...++..  ...++..... ......+..........
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l-~~~~~~~~~~~~~~~~~   81 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRV-VAAGGLYPPMRIYRDDG   81 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHH-HhcCccccceeEEeCCc
Confidence            5899999999999999999999999999999987653110   0000000  0000100000 00000000000000000


Q ss_pred             cceecCCCCCccCC---CCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEE
Q 024975           77 LMGFQAYPFVARNY---EGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE  153 (259)
Q Consensus        77 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~  153 (259)
                      .  +....+.....   ..........++..+.+.|.+.+.+.+++  +++++++++++..+ +.+.+.+.+.++ ...+
T Consensus        82 ~--~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~i~~~~-~~v~v~~~~~~~-~~~i  155 (502)
T PRK06184         82 S--VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHR--VEFGCELVGFEQDA-DGVTARVAGPAG-EETV  155 (502)
T ss_pred             e--EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCE--EEeCcEEEEEEEcC-CcEEEEEEeCCC-eEEE
Confidence            0  00000000000   00000111234466778888888888888  99999999998776 567777643221 2479


Q ss_pred             EeCEEEEccCCCCCCc
Q 024975          154 TFDAVVVCNGHFSVPR  169 (259)
Q Consensus       154 ~ad~VIlAtG~~s~~~  169 (259)
                      ++|+||.|+|.+|..+
T Consensus       156 ~a~~vVgADG~~S~vR  171 (502)
T PRK06184        156 RARYLVGADGGRSFVR  171 (502)
T ss_pred             EeCEEEECCCCchHHH
Confidence            9999999999877543

>PRK11445 putative oxidoreductase; Provisional

Probab=99.48  E-value=7.3e-13  Score=107.23  Aligned_cols=156  Identities=16%  Similarity=0.135  Sum_probs=84.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-CCccc-ccc-ccceeccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-YPVHS-SLY-KSLRVNLPRELM   78 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~-~~~~~-~~~-~~~~~~~~~~~~   78 (259)
                      |+||+||||||+|+++|..|++. ++|+|+|+.+.++..-...+...    ...+.. ..+.. ... .......+ ...
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~----~l~~~~~~~L~~lgl~~~~~~~~~~-~~~   74 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGG----LLAPDAQKSFAKDGLTLPKDVIANP-QIF   74 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcC----ccCHHHHHHHHHcCCCCCcceeecc-ccc
Confidence            58999999999999999999999 99999999864320000000000    000000 00000 000 00000000 000


Q ss_pred             eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                      ......+................|.+|.+.|.+.. ..+++  +++++++++++..+ +.|.+.+.. ++....+++|+|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~--v~~~~~v~~i~~~~-~~~~v~~~~-~g~~~~i~a~~v  149 (351)
T PRK11445         75 AVKTIDLANSLTRNYQRSYINIDRHKFDLWLKSLI-PASVE--VYHNSLCRKIWRED-DGYHVIFRA-DGWEQHITARYL  149 (351)
T ss_pred             eeeEecccccchhhcCCCcccccHHHHHHHHHHHH-hcCCE--EEcCCEEEEEEEcC-CEEEEEEec-CCcEEEEEeCEE
Confidence            00000010000000011112256788888888753 56788  99999999998876 678887642 122246899999


Q ss_pred             EEccCCCCCC
Q 024975          159 VVCNGHFSVP  168 (259)
Q Consensus       159 IlAtG~~s~~  168 (259)
                      |.|+|..|..
T Consensus       150 V~AdG~~S~v  159 (351)
T PRK11445        150 VGADGANSMV  159 (351)
T ss_pred             EECCCCCcHH
Confidence            9999986654

>PRK09126 hypothetical protein; Provisional

Probab=99.48  E-value=2.3e-13  Score=112.07  Aligned_cols=157  Identities=22%  Similarity=0.225  Sum_probs=84.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC-------c-eeeeCCCCC--CCCCCCCCCCCCccccccccce
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-------G-SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLR   70 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g-------g-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   70 (259)
                      |.+||+||||||+|+++|..|+++|++|+|+|+.+.+.       | .....+...  ...++.................
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~   81 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK   81 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence            46899999999999999999999999999999987532       1 000000000  0000000000000000000000


Q ss_pred             eccccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHH-HhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           71 VNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR-EFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                      .........   ..+.... ..........++..+.+.+.+.+. ..+++  ++++++|++++..+ +.+.|.++++.  
T Consensus        82 ~~~~~~~~~---~~~~~~~-~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~--i~~~~~v~~~~~~~-~~~~v~~~~g~--  152 (392)
T PRK09126         82 VLNGRSPFA---LTFDARG-RGADALGYLVPNHLIRRAAYEAVSQQDGIE--LLTGTRVTAVRTDD-DGAQVTLANGR--  152 (392)
T ss_pred             EEcCCCCce---eEeehhh-cCCCcceEEEeHHHHHHHHHHHHhhCCCcE--EEcCCeEEEEEEcC-CeEEEEEcCCC--
Confidence            000000000   0000000 000000111234556665555553 35788  99999999998765 66788877654  


Q ss_pred             eEEEEeCEEEEccCCCCCC
Q 024975          150 VEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~~  168 (259)
                        .+.+|+||.|+|..|..
T Consensus       153 --~~~a~~vI~AdG~~S~v  169 (392)
T PRK09126        153 --RLTARLLVAADSRFSAT  169 (392)
T ss_pred             --EEEeCEEEEeCCCCchh
Confidence              79999999999976643

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.48  E-value=2.3e-13  Score=112.87  Aligned_cols=158  Identities=17%  Similarity=0.218  Sum_probs=86.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC-----ceeeeCCCCC--CCCCCCCCCCCCccccccccceeccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-----GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLP   74 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g-----g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (259)
                      ++||+||||||+|+++|..|++.|++|+|+|+.+.+.     ......+...  ...++..... .........+.....
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l-~~~~~~~~~~~~~~~   96 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKI-LPQIGKFRQIRLSDA   96 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhh-HhhcCCccEEEEEeC
Confidence            4799999999999999999999999999999987542     1121111100  0001110000 000000000000000


Q ss_pred             cccceecCCCCCccCCCCCCCCCCC-CCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEE
Q 024975           75 RELMGFQAYPFVARNYEGSVDLRRY-PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE  152 (259)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~  152 (259)
                       .......+.....    ......| ..+..+.+.|.+.+.+. +++  +++++++++++..+ +.+.|.+.+++ +...
T Consensus        97 -~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~v~~~~-~~~~v~~~~~~-~~~~  167 (415)
T PRK07364         97 -DYPGVVKFQPTDL----GTEALGYVGEHQVLLEALQEFLQSCPNIT--WLCPAEVVSVEYQQ-DAATVTLEIEG-KQQT  167 (415)
T ss_pred             -CCCceeeeccccC----CCCccEEEEecHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecC-CeeEEEEccCC-cceE
Confidence             0000000110000    0000001 22345677777766654 677  88899999998765 66778776432 2246


Q ss_pred             EEeCEEEEccCCCCCCc
Q 024975          153 ETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       153 ~~ad~VIlAtG~~s~~~  169 (259)
                      +++|.||.|+|.+|..+
T Consensus       168 i~adlvIgADG~~S~vR  184 (415)
T PRK07364        168 LQSKLVVAADGARSPIR  184 (415)
T ss_pred             EeeeEEEEeCCCCchhH
Confidence            99999999999877543

>PRK08013 oxidoreductase; Provisional

Probab=99.48  E-value=4.3e-13  Score=110.52  Aligned_cols=156  Identities=19%  Similarity=0.107  Sum_probs=88.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCcee------e---eCCCCC--CCCCCCCCCCCCccccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW------I---YTSETE--SDPLGVDPNRYPVHSSLYKSLR   70 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~------~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   70 (259)
                      .+||+||||||+|+++|..|++.|++|+|+|+.+.+....      .   ..+...  ...++....-.......+..+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~   82 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME   82 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence            4799999999999999999999999999999987542100      0   000000  0000100000000000011111


Q ss_pred             eccccccceecCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCC
Q 024975           71 VNLPRELMGFQAYPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD  148 (259)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~  148 (259)
                      .........   ..+...  ...... .....+..+.+.|.+.+.+. +++  ++++++|++++..+ +.+.+.+.++. 
T Consensus        83 ~~~~~~~~~---~~~~~~--~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~-~~v~v~~~~g~-  153 (400)
T PRK08013         83 VWDKDSFGR---IAFDDQ--SMGYSHLGHIIENSVIHYALWQKAQQSSDIT--LLAPAELQQVAWGE-NEAFLTLKDGS-  153 (400)
T ss_pred             EEeCCCCce---EEEccc--ccCCCccEEEEEhHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecC-CeEEEEEcCCC-
Confidence            000000000   000000  000000 01245678888888887765 688  99999999998776 66778776654 


Q ss_pred             ceEEEEeCEEEEccCCCCCCc
Q 024975          149 VVEEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       149 ~~~~~~ad~VIlAtG~~s~~~  169 (259)
                         .+++|+||.|+|.+|..+
T Consensus       154 ---~i~a~lvVgADG~~S~vR  171 (400)
T PRK08013        154 ---MLTARLVVGADGANSWLR  171 (400)
T ss_pred             ---EEEeeEEEEeCCCCcHHH
Confidence               799999999999877654

>PRK07588 hypothetical protein; Provisional

Probab=99.48  E-value=2.5e-13  Score=111.77  Aligned_cols=157  Identities=15%  Similarity=0.071  Sum_probs=87.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCccccccccceecccccc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPREL   77 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (259)
                      .||+||||||+|+++|..|++.|++|+|+|+.+...   ..+...++..  ...++.... ..........+...... .
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~-l~~~~~~~~~~~~~~~~-g   78 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQ-LREAGYQIEHVRSVDPT-G   78 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHH-HHhccCCccceEEEcCC-C
Confidence            489999999999999999999999999999986542   2122111110  000000000 00000000011100000 0


Q ss_pred             ceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCE
Q 024975           78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (259)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~  157 (259)
                      ..+..++...... .........++..+...|.+.+. .+++  ++++++|++++..+ +.+.|.++++.    .+.+|.
T Consensus        79 ~~~~~~~~~~~~~-~~g~~~~~i~r~~l~~~L~~~~~-~~v~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~~d~  149 (391)
T PRK07588         79 RRKADLNVDSFRR-MVGDDFTSLPRGDLAAAIYTAID-GQVE--TIFDDSIATIDEHR-DGVRVTFERGT----PRDFDL  149 (391)
T ss_pred             CEEEEecHHHccc-cCCCceEEEEHHHHHHHHHHhhh-cCeE--EEeCCEEeEEEECC-CeEEEEECCCC----EEEeCE
Confidence            0011111110000 00011112456777777766543 3677  99999999998876 67888887765    679999


Q ss_pred             EEEccCCCCCCcc
Q 024975          158 VVVCNGHFSVPRL  170 (259)
Q Consensus       158 VIlAtG~~s~~~~  170 (259)
                      ||.|+|.+|..+.
T Consensus       150 vIgADG~~S~vR~  162 (391)
T PRK07588        150 VIGADGLHSHVRR  162 (391)
T ss_pred             EEECCCCCccchh
Confidence            9999998776654

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.48  E-value=7e-13  Score=109.01  Aligned_cols=141  Identities=18%  Similarity=0.087  Sum_probs=85.3

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY   83 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (259)
                      ||+||||||+|+++|+.|.+.|.+|+|+|+++..++.....-.      ....     ..................+...
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~------~~~~-----~~~~~~~~~~~~~~~~~~~~~~   69 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVW------DDDL-----SDLGLADCVEHVWPDVYEYRFP   69 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCcccccc------Hhhh-----hhhchhhHHhhcCCCceEEecC
Confidence            7999999999999999999999999999998777654322100      0000     0000000000000000000000


Q ss_pred             CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccC
Q 024975           84 PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG  163 (259)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG  163 (259)
                      .....    .........+..+.+.+.+.+.+.+++  ++ ..+|+.+...+++.+.|.++++.    .++++.||+|+|
T Consensus        70 ~~~~~----~~~~~~~i~~~~l~~~l~~~~~~~gv~--~~-~~~v~~i~~~~~~~~~v~~~~g~----~~~a~~VI~A~G  138 (388)
T TIGR01790        70 KQPRK----LGTAYGSVDSTRLHEELLQKCPEGGVL--WL-ERKAIHAEADGVALSTVYCAGGQ----RIQARLVIDARG  138 (388)
T ss_pred             Ccchh----cCCceeEEcHHHHHHHHHHHHHhcCcE--EE-ccEEEEEEecCCceeEEEeCCCC----EEEeCEEEECCC
Confidence            00000    001111245688889999888888876  54 66888888764367888877653    799999999999


Q ss_pred             CCC
Q 024975          164 HFS  166 (259)
Q Consensus       164 ~~s  166 (259)
                      .++
T Consensus       139 ~~s  141 (388)
T TIGR01790       139 FGP  141 (388)
T ss_pred             Cch
Confidence            765

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.48  E-value=1.1e-12  Score=107.87  Aligned_cols=152  Identities=16%  Similarity=0.137  Sum_probs=83.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCC-CCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSE-TESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +||+||||||+|+++|..|+++|++|+|+|+....+..|...-. .....++....  ... .....+....+.. ..+ 
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~--~~~-~~i~~~~~~~p~~-~~~-   75 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRD--IID-RRVTKMKMISPSN-IAV-   75 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchh--HHH-hhhceeEEecCCc-eEE-
Confidence            58999999999999999999999999999997654322211000 00000000000  000 0000111111110 000 


Q ss_pred             CCCCCccCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEe--CCCcEEEEEEecC-----CceEEE
Q 024975           82 AYPFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV--ESNKWKVKSRKKD-----DVVEEE  153 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~--~~~~~~v~~~~g~-----~~~~~~  153 (259)
                      .+.  ..   ...... ....+..|.++|.+.+.+.|++  ++.+ +++++...  .++.+.|.....+     ++...+
T Consensus        76 ~~~--~~---~~~~~~~~~v~R~~~d~~L~~~a~~~G~~--v~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i  147 (398)
T TIGR02028        76 DIG--RT---LKEHEYIGMLRREVLDSFLRRRAADAGAT--LING-LVTKLSLPADADDPYTLHYISSDSGGPSGTRCTL  147 (398)
T ss_pred             Eec--cC---CCCCCceeeeeHHHHHHHHHHHHHHCCcE--EEcc-eEEEEEeccCCCceEEEEEeeccccccCCCccEE
Confidence            000  00   000111 1257789999999999999998  7666 47776532  2245666653211     233579


Q ss_pred             EeCEEEEccCCCCC
Q 024975          154 TFDAVVVCNGHFSV  167 (259)
Q Consensus       154 ~ad~VIlAtG~~s~  167 (259)
                      +++.||.|+|..|.
T Consensus       148 ~a~~VIgADG~~S~  161 (398)
T TIGR02028       148 EVDAVIGADGANSR  161 (398)
T ss_pred             EeCEEEECCCcchH
Confidence            99999999997553

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.48  E-value=3.3e-13  Score=111.52  Aligned_cols=156  Identities=15%  Similarity=0.134  Sum_probs=88.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcC-----ceeeeCCCCC--CCCCCCCCCCCCccccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVG-----GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVN   72 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~g-----g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   72 (259)
                      ++||+||||||+|+++|..|+++|  ++|+|+|+.+...     ......++..  ...++....- .........+...
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~-~~~~~~~~~~~~~   79 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEI-APEAQPITDMVIT   79 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhh-hhhcCcccEEEEE
Confidence            589999999999999999999995  9999999986421     1111110000  0001110000 0000000000000


Q ss_pred             ccc--ccceecCCCCCccCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           73 LPR--ELMGFQAYPFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        73 ~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                      ...  .........+...  ....... ....+..+.+.|.+.+.+.+++  ++++++|+++...+ +.+.+.+.++.  
T Consensus        80 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~g~--  152 (403)
T PRK07333         80 DSRTSDPVRPVFLTFEGE--VEPGEPFAHMVENRVLINALRKRAEALGID--LREATSVTDFETRD-EGVTVTLSDGS--  152 (403)
T ss_pred             eCCCCCCCccceEEeccc--ccCCCccEEEeEhHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcC-CEEEEEECCCC--
Confidence            000  0000000000000  0000111 1245688899999988888998  99999999998776 66778776654  


Q ss_pred             eEEEEeCEEEEccCCCCC
Q 024975          150 VEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~  167 (259)
                        .+.+|.||.|+|.+|.
T Consensus       153 --~~~ad~vI~AdG~~S~  168 (403)
T PRK07333        153 --VLEARLLVAADGARSK  168 (403)
T ss_pred             --EEEeCEEEEcCCCChH
Confidence              7899999999997664

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.47  E-value=3.9e-13  Score=110.43  Aligned_cols=154  Identities=14%  Similarity=0.128  Sum_probs=87.3

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCc--------eeeeCCCCC--CCCCCCCCCCCCccccccccceecc
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG--------SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL   73 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg--------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   73 (259)
                      ||+||||||+|+++|..|+++|++|+|+|+.+.++.        .....+...  ...++...............+....
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            799999999999999999999999999999976531        111110000  0000100000000000000000000


Q ss_pred             ccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CceeEEeceeEEEEEEeCCCcEEEEEEecCCceEE
Q 024975           74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE  152 (259)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~  152 (259)
                      ......+ .++....  . ........++..+.+.|.+.+.+.+ ++  ++++++|+++...+ +.+.+.++++.    .
T Consensus        81 ~~~~~~~-~~~~~~~--~-~~~~~~~i~r~~l~~~L~~~~~~~~~~~--v~~~~~v~~i~~~~-~~~~v~~~~g~----~  149 (385)
T TIGR01988        81 GGSFGAL-HFDADEI--G-LEALGYVVENRVLQQALWERLQEYPNVT--LLCPARVVELPRHS-DHVELTLDDGQ----Q  149 (385)
T ss_pred             CCCCceE-Eechhhc--C-CCccEEEEEcHHHHHHHHHHHHhCCCcE--EecCCeEEEEEecC-CeeEEEECCCC----E
Confidence            0000000 0000000  0 0000112455788888888887776 77  99999999998776 67778777654    6


Q ss_pred             EEeCEEEEccCCCCCC
Q 024975          153 ETFDAVVVCNGHFSVP  168 (259)
Q Consensus       153 ~~ad~VIlAtG~~s~~  168 (259)
                      +.+|.||.|+|.+|..
T Consensus       150 ~~~~~vi~adG~~S~v  165 (385)
T TIGR01988       150 LRARLLVGADGANSKV  165 (385)
T ss_pred             EEeeEEEEeCCCCCHH
Confidence            9999999999987653

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.47  E-value=5.2e-13  Score=109.51  Aligned_cols=157  Identities=21%  Similarity=0.231  Sum_probs=90.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC-CCc---CceeeeCCCCC--CCCCCCCCCCCCccccccccceeccc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQV---GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLP   74 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~-~~~---gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (259)
                      +++||+||||||+|+++|..|.+.|++|+|+|+. ..+   |......+...  ...++............+........
T Consensus         1 ~~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~   80 (387)
T COG0654           1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDG   80 (387)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecC
Confidence            4789999999999999999999999999999997 221   11111111000  01111100000000000000000000


Q ss_pred             cccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CceeEEeceeEEEEEEeCCCcEEEEEE-ecCCceEE
Q 024975           75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSR-KKDDVVEE  152 (259)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~-~g~~~~~~  152 (259)
                      ..  ....+.....   .........++..+...|.+.+.+.+ ++  ++.+++|+.++.++ +.+.+++. +|.    .
T Consensus        81 ~~--~~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~v~--~~~~~~v~~~~~~~-~~v~v~l~~dG~----~  148 (387)
T COG0654          81 GR--RLLIFDAAEL---GRGALGYVVPRSDLLNALLEAARALPNVT--LRFGAEVEAVEQDG-DGVTVTLSFDGE----T  148 (387)
T ss_pred             Cc--eeEEeccccc---CCCcceEEeEhHHHHHHHHHHHhhCCCcE--EEcCceEEEEEEcC-CceEEEEcCCCc----E
Confidence            00  0000010000   00111122355888899999887765 78  99999999999987 66778888 543    8


Q ss_pred             EEeCEEEEccCCCCCCc
Q 024975          153 ETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       153 ~~ad~VIlAtG~~s~~~  169 (259)
                      +.||.||.|.|.+|..+
T Consensus       149 ~~a~llVgADG~~S~vR  165 (387)
T COG0654         149 LDADLLVGADGANSAVR  165 (387)
T ss_pred             EecCEEEECCCCchHHH
Confidence            99999999999877654

>PRK07045 putative monooxygenase; Reviewed

Probab=99.47  E-value=6.3e-13  Score=109.22  Aligned_cols=157  Identities=17%  Similarity=0.168  Sum_probs=87.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCccccccccceeccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (259)
                      ++||+||||||+|+++|..|+++|++|+|+|+.+.+.   +.....++..  ....+...............+....  .
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~--~   82 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYH--D   82 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEec--C
Confidence            3699999999999999999999999999999987652   1111111000  0000000000000000000000000  0


Q ss_pred             cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCCCc-EEEEEEecCCceEEEE
Q 024975           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEET  154 (259)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~~  154 (259)
                      ...+..+++...   .........++..+.+.|.+.+.. .+++  ++++++|+++...+++. +.|.+.++.    .+.
T Consensus        83 g~~~~~~~~~~~---~~~g~~~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~g~----~~~  153 (388)
T PRK07045         83 KELIASLDYRSA---SALGYFILIPCEQLRRLLLAKLDGLPNVR--LRFETSIERIERDADGTVTSVTLSDGE----RVA  153 (388)
T ss_pred             CcEEEEecCCcc---ccCCceEEccHHHHHHHHHHHHhcCCCee--EEeCCEEEEEEECCCCcEEEEEeCCCC----EEE
Confidence            000111111100   000111224567788878777654 4677  99999999999876342 457766554    789


Q ss_pred             eCEEEEccCCCCCCc
Q 024975          155 FDAVVVCNGHFSVPR  169 (259)
Q Consensus       155 ad~VIlAtG~~s~~~  169 (259)
                      +|.||.|+|..|..+
T Consensus       154 ~~~vIgADG~~S~vR  168 (388)
T PRK07045        154 PTVLVGADGARSMIR  168 (388)
T ss_pred             CCEEEECCCCChHHH
Confidence            999999999877544

>PRK07190 hypothetical protein; Provisional

Probab=99.47  E-value=1.3e-12  Score=109.79  Aligned_cols=158  Identities=17%  Similarity=0.087  Sum_probs=86.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCce--ee-eCCCCC--CCCCCCCCCCCCcc-ccccccceecccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS--WI-YTSETE--SDPLGVDPNRYPVH-SSLYKSLRVNLPR   75 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~--~~-~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~   75 (259)
                      .+||+||||||+|+++|..|.++|++|+|+|+.+.+...  .. ..+...  ....+....  +.. .............
T Consensus         5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~--l~~~~~~~~~~~~~~~g   82 (487)
T PRK07190          5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDE--LYPLGKPCNTSSVWANG   82 (487)
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHH--HHhhCccceeEEEecCC
Confidence            479999999999999999999999999999998765311  10 000000  000000000  000 0000000000000


Q ss_pred             ccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975           76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (259)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a  155 (259)
                      .........+... ...........+...+.+.|.+.+.+.|++  ++++++|+++...+ +.+.+.+.++.    .+++
T Consensus        83 ~~i~~~~~~~~~~-~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~--v~~~~~v~~l~~~~-~~v~v~~~~g~----~v~a  154 (487)
T PRK07190         83 KFISRQSSWWEEL-EGCLHKHFLMLGQSYVEKLLDDKLKEAGAA--VKRNTSVVNIELNQ-AGCLTTLSNGE----RIQS  154 (487)
T ss_pred             ceEeeccccCccC-CcCCCCceEecCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcC-CeeEEEECCCc----EEEe
Confidence            0000000000000 000000011123466777888888888998  99999999999876 56666665543    7999


Q ss_pred             CEEEEccCCCCCCc
Q 024975          156 DAVVVCNGHFSVPR  169 (259)
Q Consensus       156 d~VIlAtG~~s~~~  169 (259)
                      ++||.|+|..|..+
T Consensus       155 ~~vVgADG~~S~vR  168 (487)
T PRK07190        155 RYVIGADGSRSFVR  168 (487)
T ss_pred             CEEEECCCCCHHHH
Confidence            99999999766443

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.47  E-value=4.8e-13  Score=111.25  Aligned_cols=111  Identities=22%  Similarity=0.333  Sum_probs=77.2

Q ss_pred             HHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEE--eCEEEEccCCCCCCccCCCCCCCCCCCceEEcc
Q 024975          110 QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET--FDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSH  187 (259)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~--ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~  187 (259)
                      .+++.+.+++  ++.+++|++++..+ +.+.+.... ++  ..+.  ||+||+|||  +.|+.|.++|.+.-  ......
T Consensus        51 ~~~~~~~gv~--~~~~~~V~~id~~~-~~v~~~~~~-~~--~~~~~~yd~lIiATG--~~p~~~~i~G~~~~--~v~~~~  120 (427)
T TIGR03385        51 EVFIKKRGID--VKTNHEVIEVNDER-QTVVVRNNK-TN--ETYEESYDYLILSPG--ASPIVPNIEGINLD--IVFTLR  120 (427)
T ss_pred             HHHHHhcCCe--EEecCEEEEEECCC-CEEEEEECC-CC--CEEecCCCEEEECCC--CCCCCCCCCCcCCC--CEEEEC
Confidence            3445677888  88899999998654 434443221 11  2466  999999999  78888888886521  111111


Q ss_pred             cCCCC-------CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          188 NYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       188 ~~~~~-------~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .....       ....+++++|+|+|++|+|+|..|.+.+.+|+++.|.+
T Consensus       121 ~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~  170 (427)
T TIGR03385       121 NLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE  170 (427)
T ss_pred             CHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence            11000       01345899999999999999999999999999999987

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PLN02463 lycopene beta cyclase

Probab=99.46  E-value=5.8e-13  Score=110.12  Aligned_cols=143  Identities=16%  Similarity=0.118  Sum_probs=84.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+||+||||||+|+++|..|++.|++|+|+|+.+...  |..+...     ....   +......+.+...-+....-+.
T Consensus        28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~--~p~~~g~-----w~~~---l~~lgl~~~l~~~w~~~~v~~~   97 (447)
T PLN02463         28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSI--WPNNYGV-----WVDE---FEALGLLDCLDTTWPGAVVYID   97 (447)
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccch--hccccch-----HHHH---HHHCCcHHHHHhhCCCcEEEEe
Confidence            4799999999999999999999999999999975321  1110000     0000   0000000000000000000000


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      +... ..    .........+.++.+.+.+.+.+.+++  ++ ..+|+++...+ +.+.|.++++.    .+.+|.||+|
T Consensus        98 ~~~~-~~----~~~~y~~V~R~~L~~~Ll~~~~~~GV~--~~-~~~V~~I~~~~-~~~~V~~~dG~----~i~A~lVI~A  164 (447)
T PLN02463         98 DGKK-KD----LDRPYGRVNRKKLKSKMLERCIANGVQ--FH-QAKVKKVVHEE-SKSLVVCDDGV----KIQASLVLDA  164 (447)
T ss_pred             CCCC-cc----ccCcceeEEHHHHHHHHHHHHhhcCCE--EE-eeEEEEEEEcC-CeEEEEECCCC----EEEcCEEEEC
Confidence            0000 00    011122246788989998888888887  54 57999998876 66888887764    7999999999


Q ss_pred             cCCCCC
Q 024975          162 NGHFSV  167 (259)
Q Consensus       162 tG~~s~  167 (259)
                      +|..+.
T Consensus       165 dG~~s~  170 (447)
T PLN02463        165 TGFSRC  170 (447)
T ss_pred             cCCCcC
Confidence            997553

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.46  E-value=5.4e-13  Score=109.68  Aligned_cols=152  Identities=16%  Similarity=0.115  Sum_probs=85.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCc---eeeeCCCCCCCCCCCCCCC-CCccc-ccccccee--cc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETESDPLGVDPNR-YPVHS-SLYKSLRV--NL   73 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg---~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~--~~   73 (259)
                      |.+||+||||||+|+++|+.|.+.|++|+|+|+.+.+..   .|..  ...    ...+.. ..+.. ...+.+..  ..
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~--r~~----~l~~~~~~~l~~~g~~~~~~~~~~~   77 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDS--RVY----AISPSSQAFLERLGVWQALDAARLA   77 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCC--ceE----eecHHHHHHHHHcCchhhhhhhcCC
Confidence            568999999999999999999999999999999876532   1100  000    000000 00000 00000000  00


Q ss_pred             ccccceecC-----CCCCccCCCCCCCCCC-CCCHHHHHHHHHHHHHHhC-CceeEEeceeEEEEEEeCCCcEEEEEEec
Q 024975           74 PRELMGFQA-----YPFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKK  146 (259)
Q Consensus        74 ~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g  146 (259)
                      +...+.+.+     ..+...  ........ ...+..+.+.|.+.+.+.+ ++  ++ +++|+++...+ +.+.+.+.++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~--~~-~~~v~~i~~~~-~~~~v~~~~g  151 (388)
T PRK07608         78 PVYDMRVFGDAHARLHFSAY--QAGVPQLAWIVESSLIERALWAALRFQPNLT--WF-PARAQGLEVDP-DAATLTLADG  151 (388)
T ss_pred             cceEEEEEECCCceeEeecc--ccCCCCCEEEEEhHHHHHHHHHHHHhCCCcE--EE-cceeEEEEecC-CeEEEEECCC
Confidence            000000000     000000  00000001 1235778888888887776 76  66 88999998765 6688887765


Q ss_pred             CCceEEEEeCEEEEccCCCCCC
Q 024975          147 DDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       147 ~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      .    .+.+|.||.|+|.+|..
T Consensus       152 ~----~~~a~~vI~adG~~S~v  169 (388)
T PRK07608        152 Q----VLRADLVVGADGAHSWV  169 (388)
T ss_pred             C----EEEeeEEEEeCCCCchH
Confidence            4    79999999999987653

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.46  E-value=1.6e-12  Score=107.99  Aligned_cols=149  Identities=16%  Similarity=0.175  Sum_probs=84.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc----CceeeeCCCCCCCCCCCCCCCCCccccccccceeccccc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~----gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (259)
                      |++||+||||||+|+++|..|+++|++|+|+|+....    |+.....   ....++...  .... .....+....+..
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~---~l~~lgl~~--~~~~-~~i~~~~~~~p~~  111 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLC---MVGEFDLPL--DIID-RKVTKMKMISPSN  111 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHh---HHhhhcCcH--HHHH-HHhhhheEecCCc
Confidence            4689999999999999999999999999999997432    1111100   000000000  0000 0000000001110


Q ss_pred             cceecCCCCCccCCCCCCCCCCC---CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeC--CCcEEEEEEec-----
Q 024975           77 LMGFQAYPFVARNYEGSVDLRRY---PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKWKVKSRKK-----  146 (259)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~~v~~~~g-----  146 (259)
                      . . .++..       ......|   ..|..|.++|.+.+.+.|++  ++.. +++++....  ++.+.|.+.+.     
T Consensus       112 ~-~-v~~~~-------~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~--~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~  179 (450)
T PLN00093        112 V-A-VDIGK-------TLKPHEYIGMVRREVLDSFLRERAQSNGAT--LING-LFTRIDVPKDPNGPYVIHYTSYDSGSG  179 (450)
T ss_pred             e-E-EEecc-------cCCCCCeEEEecHHHHHHHHHHHHHHCCCE--EEec-eEEEEEeccCCCCcEEEEEEecccccc
Confidence            0 0 00000       0011122   57789999999999989998  7654 577776432  24567776542     


Q ss_pred             CCceEEEEeCEEEEccCCCCC
Q 024975          147 DDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       147 ~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      +++...+.+|.||.|+|..|.
T Consensus       180 ~g~~~~v~a~~VIgADG~~S~  200 (450)
T PLN00093        180 AGTPKTLEVDAVIGADGANSR  200 (450)
T ss_pred             CCCccEEEeCEEEEcCCcchH
Confidence            122357999999999997664

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.46  E-value=7.2e-13  Score=109.25  Aligned_cols=163  Identities=20%  Similarity=0.244  Sum_probs=90.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCccccccccceecccc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPR   75 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (259)
                      |..+|+||||||+|+++|..|+++|++|+|+|+.+.+.   ......++..  ...++........ ......+......
T Consensus         1 ~~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~-~~~~~~~~~~~g~   79 (400)
T PRK06475          1 TRGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGT-GVTPKALYLMDGR   79 (400)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhc-ccCcceEEEecCC
Confidence            56899999999999999999999999999999987542   2222111110  0000100000000 0000000000000


Q ss_pred             ccceecCCCCCccCCCCCCCCCCC--CCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEE
Q 024975           76 ELMGFQAYPFVARNYEGSVDLRRY--PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE  152 (259)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~  152 (259)
                      .............  ....+...|  .++..+.+.|.+.+.+. +++  ++++++|+++...+ +.+.+++.++++. +.
T Consensus        80 ~~~~~~~~~~~~~--~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~--v~~~~~v~~~~~~~-~~v~v~~~~~~~~-~~  153 (400)
T PRK06475         80 KARPLLAMQLGDL--ARKRWHHPYIVCHRADLQSALLDACRNNPGIE--IKLGAEMTSQRQTG-NSITATIIRTNSV-ET  153 (400)
T ss_pred             CcceEEEecchhh--hhhcCCCCceeECHHHHHHHHHHHHHhcCCcE--EEECCEEEEEecCC-CceEEEEEeCCCC-cE
Confidence            0000000000000  000111112  46788888888877654 677  99999999998765 6677777543221 36


Q ss_pred             EEeCEEEEccCCCCCCcc
Q 024975          153 ETFDAVVVCNGHFSVPRL  170 (259)
Q Consensus       153 ~~ad~VIlAtG~~s~~~~  170 (259)
                      +.+|.||.|.|.+|..+.
T Consensus       154 ~~adlvIgADG~~S~vR~  171 (400)
T PRK06475        154 VSAAYLIACDGVWSMLRA  171 (400)
T ss_pred             EecCEEEECCCccHhHHh
Confidence            899999999998876543

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.45  E-value=4.3e-13  Score=110.35  Aligned_cols=153  Identities=17%  Similarity=0.179  Sum_probs=85.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC---c-ee-----eeCCCCC--CCCCCCCCCCCCccccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---G-SW-----IYTSETE--SDPLGVDPNRYPVHSSLYKSLR   70 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g---g-~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   70 (259)
                      .+||+||||||+|+++|..|++.|++|+|+|+.+...   + ..     ...+...  ...++............+..+.
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   84 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE   84 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence            5899999999999999999999999999999975321   0 00     0000000  0000000000000000000000


Q ss_pred             eccc-cccceecCCCCCccCCCCCCCCCCC-CCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecC
Q 024975           71 VNLP-RELMGFQAYPFVARNYEGSVDLRRY-PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKD  147 (259)
Q Consensus        71 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~  147 (259)
                      .... .....+.....       ......| ..+..+.+.|.+.+.+. +++  ++++++|+++...+ +.+.|.+.++.
T Consensus        85 ~~~~~~~~~~~~~~~~-------~~~~~g~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g~  154 (391)
T PRK08020         85 TWEWETAHVVFDAAEL-------KLPELGYMVENRVLQLALWQALEAHPNVT--LRCPASLQALQRDD-DGWELTLADGE  154 (391)
T ss_pred             EEeCCCCeEEeccccc-------CCCccEEEEEcHHHHHHHHHHHHcCCCcE--EEcCCeeEEEEEcC-CeEEEEECCCC
Confidence            0000 00000000000       0001111 34577888888877666 787  88899999998765 66888877654


Q ss_pred             CceEEEEeCEEEEccCCCCCC
Q 024975          148 DVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       148 ~~~~~~~ad~VIlAtG~~s~~  168 (259)
                          .+++|.||.|+|.+|..
T Consensus       155 ----~~~a~~vI~AdG~~S~v  171 (391)
T PRK08020        155 ----EIQAKLVIGADGANSQV  171 (391)
T ss_pred             ----EEEeCEEEEeCCCCchh
Confidence                79999999999987643

>PRK07236 hypothetical protein; Provisional

Probab=99.44  E-value=1.9e-12  Score=106.28  Aligned_cols=146  Identities=18%  Similarity=0.131  Sum_probs=81.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc----CceeeeCCCCC--CCCCCCCCCCCCccccccccceecccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPR   75 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~----gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (259)
                      +++|+|||||++|+++|..|.+.|++|+|+|+.+..    |+.....+...  ...++....           .....+.
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~-----------~~~~~~~   74 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALP-----------ADIGVPS   74 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcc-----------cccccCc
Confidence            579999999999999999999999999999998642    11111111000  000011000           0000000


Q ss_pred             ccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975           76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (259)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a  155 (259)
                      ....+.+......  ...........+..+.+.|.+.+  .+.+  ++++++|++++..+ +.+++.+.++.    .+.+
T Consensus        75 ~~~~~~~~~g~~~--~~~~~~~~~~~~~~l~~~L~~~~--~~~~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~a  143 (386)
T PRK07236         75 RERIYLDRDGRVV--QRRPMPQTQTSWNVLYRALRAAF--PAER--YHLGETLVGFEQDG-DRVTARFADGR----RETA  143 (386)
T ss_pred             cceEEEeCCCCEe--eccCCCccccCHHHHHHHHHHhC--CCcE--EEcCCEEEEEEecC-CeEEEEECCCC----EEEe
Confidence            0000000000000  00000111123445555544332  1344  89999999998775 67888888765    7999


Q ss_pred             CEEEEccCCCCCCc
Q 024975          156 DAVVVCNGHFSVPR  169 (259)
Q Consensus       156 d~VIlAtG~~s~~~  169 (259)
                      |.||.|.|..|..+
T Consensus       144 d~vIgADG~~S~vR  157 (386)
T PRK07236        144 DLLVGADGGRSTVR  157 (386)
T ss_pred             CEEEECCCCCchHH
Confidence            99999999877654

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.44  E-value=3e-12  Score=107.62  Aligned_cols=163  Identities=18%  Similarity=0.198  Sum_probs=87.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC--cCceeeeCCCCCCCCCCCCCC--CCCccccccccce-------
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ--VGGSWIYTSETESDPLGVDPN--RYPVHSSLYKSLR-------   70 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~--~gg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------   70 (259)
                      .+||+|||+|++|+++|..|++.|.+|+|+||.+.  .||..................  ...-....+..+.       
T Consensus         4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (466)
T PRK08274          4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRT   83 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCCC
Confidence            57999999999999999999999999999999874  455433221110000000000  0000000000000       


Q ss_pred             ---------ecccccccee-c--CCCCCccCCCCC--CCCCC-C-CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEe
Q 024975           71 ---------VNLPRELMGF-Q--AYPFVARNYEGS--VDLRR-Y-PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV  134 (259)
Q Consensus        71 ---------~~~~~~~~~~-~--~~~~~~~~~~~~--~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~  134 (259)
                               .... +...+ .  ..++........  ..... + .....+...|.+.+++.+++  ++++++|+++..+
T Consensus        84 ~~~~~~~~~~~s~-~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~--i~~~t~v~~l~~~  160 (466)
T PRK08274         84 DEALARLLIRESS-DCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVE--IRYDAPVTALELD  160 (466)
T ss_pred             CHHHHHHHHHcCH-HHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEec
Confidence                     0000 00000 0  011110000000  00000 1 11356778888888888998  9999999999876


Q ss_pred             CCCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          135 ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       135 ~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ++..+.+...+.++....+.++.||+|||.+..
T Consensus       161 ~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~  193 (466)
T PRK08274        161 DGRFVGARAGSAAGGAERIRAKAVVLAAGGFES  193 (466)
T ss_pred             CCeEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence            533344555433344457899999999997554

>PRK06126 hypothetical protein; Provisional

Probab=99.44  E-value=9.4e-12  Score=106.64  Aligned_cols=67  Identities=16%  Similarity=0.107  Sum_probs=50.4

Q ss_pred             CCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCCCc
Q 024975          100 PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       100 ~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~~~  169 (259)
                      .++..+...|.+.+.+. +++  ++++++|+++...+ +.+.+.+.+ .+++...+.+|+||.|+|.+|..+
T Consensus       123 i~q~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~-~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR  191 (545)
T PRK06126        123 IPQKYLEPILLEHAAAQPGVT--LRYGHRLTDFEQDA-DGVTATVEDLDGGESLTIRADYLVGCDGARSAVR  191 (545)
T ss_pred             CCHHHHHHHHHHHHHhCCCce--EEeccEEEEEEECC-CeEEEEEEECCCCcEEEEEEEEEEecCCcchHHH
Confidence            34566777888877664 788  99999999999876 556676655 234446799999999999877543

>PRK07538 hypothetical protein; Provisional

Probab=99.43  E-value=3.6e-12  Score=105.59  Aligned_cols=160  Identities=19%  Similarity=0.106  Sum_probs=86.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCcc-ccccccceeccccc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVH-SSLYKSLRVNLPRE   76 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   76 (259)
                      +||+||||||+|+++|..|.++|++|+|+|+.+.+.   ......++..  ...++....  +.. ......+...... 
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~--l~~~~~~~~~~~~~~~~-   77 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDA--LDAIGIRTRELAYFNRH-   77 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHH--HHhhCCCCcceEEEcCC-
Confidence            489999999999999999999999999999987542   1111111000  000000000  000 0000000000000 


Q ss_pred             cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEE
Q 024975           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEET  154 (259)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~  154 (259)
                      ...+...+....  .....+....++..+.+.|.+.+.+ .+.. .++++++|+++...+ +.+.+.+.++. ++..+++
T Consensus        78 g~~~~~~~~~~~--~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~-~i~~~~~v~~~~~~~-~~~~~~~~~~~~g~~~~~~  153 (413)
T PRK07538         78 GQRIWSEPRGLA--AGYDWPQYSIHRGELQMLLLDAVRERLGPD-AVRTGHRVVGFEQDA-DVTVVFLGDRAGGDLVSVR  153 (413)
T ss_pred             CCEEeeccCCcc--cCCCCceEEEEHHHHHHHHHHHHHhhcCCc-EEEcCCEEEEEEecC-CceEEEEeccCCCccceEE
Confidence            000000000000  0000111124678888888877754 3532 289999999998776 44566665532 3345799


Q ss_pred             eCEEEEccCCCCCCc
Q 024975          155 FDAVVVCNGHFSVPR  169 (259)
Q Consensus       155 ad~VIlAtG~~s~~~  169 (259)
                      +|.||.|+|..|..+
T Consensus       154 adlvIgADG~~S~vR  168 (413)
T PRK07538        154 GDVLIGADGIHSAVR  168 (413)
T ss_pred             eeEEEECCCCCHHHh
Confidence            999999999877544

>PRK06753 hypothetical protein; Provisional

Probab=99.42  E-value=1.2e-12  Score=107.12  Aligned_cols=150  Identities=18%  Similarity=0.214  Sum_probs=85.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCccccccccceecccccc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPREL   77 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (259)
                      .||+||||||+|+++|..|++.|++|+|+|+.+.+.   ......++..  ....+.... ..........+....+. .
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~-~~~~~~~~~~~~~~~~~-g   78 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKG-IKNAGQILSTMNLLDDK-G   78 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHH-HHhcCCcccceeEEcCC-C
Confidence            389999999999999999999999999999987653   1111111000  000000000 00000000000000000 0


Q ss_pred             ceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCE
Q 024975           78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (259)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~  157 (259)
                      ..+...++.      ........++..+...|.+.+.  +.+  ++++++|++++..+ +.+.++++++.    .+.+|.
T Consensus        79 ~~~~~~~~~------~~~~~~~i~R~~l~~~L~~~~~--~~~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~~~~  143 (373)
T PRK06753         79 TLLNKVKLK------SNTLNVTLHRQTLIDIIKSYVK--EDA--IFTGKEVTKIENET-DKVTIHFADGE----SEAFDL  143 (373)
T ss_pred             CEEeecccc------cCCccccccHHHHHHHHHHhCC--Cce--EEECCEEEEEEecC-CcEEEEECCCC----EEecCE
Confidence            000011110      0111122466777777777654  344  89999999998765 67888887764    789999


Q ss_pred             EEEccCCCCCCc
Q 024975          158 VVVCNGHFSVPR  169 (259)
Q Consensus       158 VIlAtG~~s~~~  169 (259)
                      ||.|+|.+|..+
T Consensus       144 vigadG~~S~vR  155 (373)
T PRK06753        144 CIGADGIHSKVR  155 (373)
T ss_pred             EEECCCcchHHH
Confidence            999999776544

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.42  E-value=7.2e-13  Score=108.71  Aligned_cols=149  Identities=13%  Similarity=0.128  Sum_probs=85.9

Q ss_pred             eEEEECCChHHHHHHHHHHHcC-CcEEEEeeCCCcCce-------eeeCCCCC--CCCCCCCCCCCCccccccccceecc
Q 024975            4 HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGS-------WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL   73 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~~~gg~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   73 (259)
                      ||+||||||+|+++|..|.++| ++|+|+|+.+.+.-.       ....++..  ...++....-... ......+....
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~-~~~~~~~~~~~   79 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPF-ATPILDIHVSD   79 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhh-cCccceEEEEc
Confidence            7999999999999999999999 999999998654211       00000000  0000110000000 00000000000


Q ss_pred             c--cccceecCCCCCccCCCCCCCCCCC-CCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           74 P--RELMGFQAYPFVARNYEGSVDLRRY-PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        74 ~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                      .  .....+   .....    ......| ..+..+.+.|.+.+.+. +++  ++++++|+++...+ +.+++.++++.  
T Consensus        80 ~~~~~~~~~---~~~~~----~~~~~~~~i~r~~l~~~L~~~~~~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~g~--  147 (382)
T TIGR01984        80 QGHFGATHL---RASEF----GLPALGYVVELADLGQALLSRLALLTNIQ--LYCPARYKEIIRNQ-DYVRVTLDNGQ--  147 (382)
T ss_pred             CCCCceEEe---chhhc----CCCccEEEEEcHHHHHHHHHHHHhCCCcE--EEcCCeEEEEEEcC-CeEEEEECCCC--
Confidence            0  000000   00000    0000111 34578888888888774 888  89999999998776 66888876654  


Q ss_pred             eEEEEeCEEEEccCCCCC
Q 024975          150 VEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~  167 (259)
                        .+.+|.||.|+|.+|.
T Consensus       148 --~~~ad~vV~AdG~~S~  163 (382)
T TIGR01984       148 --QLRAKLLIAADGANSK  163 (382)
T ss_pred             --EEEeeEEEEecCCChH
Confidence              7999999999998764

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.42  E-value=2.5e-12  Score=105.75  Aligned_cols=158  Identities=23%  Similarity=0.282  Sum_probs=85.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc------CceeeeCCCCC--CCCCCCCCCCCCccccccccceec
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV------GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVN   72 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~------gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   72 (259)
                      |++||+||||||+|+++|..|++.|++|+|+|+.+..      ++.. ..++..  ...++....-. ........+...
T Consensus         1 ~~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~-l~~~~~~~l~~lGl~~~l~-~~~~~~~~~~~~   78 (392)
T PRK08243          1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGV-LEQGTVDLLREAGVGERMD-REGLVHDGIELR   78 (392)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeE-ECHhHHHHHHHcCChHHHH-hcCCccCcEEEE
Confidence            6789999999999999999999999999999998642      1111 111000  00011100000 000000000000


Q ss_pred             cccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEE
Q 024975           73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE  152 (259)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~  152 (259)
                      ....   ....++...  ........+ ++..+.+.|.+.+.+.+++  +++++++++++..+++...|.+.. +++...
T Consensus        79 ~~g~---~~~~~~~~~--~~~~~~~~~-~~~~l~~~Ll~~a~~~gv~--v~~~~~v~~i~~~~~~~~~V~~~~-~G~~~~  149 (392)
T PRK08243         79 FDGR---RHRIDLTEL--TGGRAVTVY-GQTEVTRDLMAARLAAGGP--IRFEASDVALHDFDSDRPYVTYEK-DGEEHR  149 (392)
T ss_pred             ECCE---EEEeccccc--cCCceEEEe-CcHHHHHHHHHHHHhCCCe--EEEeeeEEEEEecCCCceEEEEEc-CCeEEE
Confidence            0000   001111100  000001112 2345566666666667888  999999999986332455666642 233357


Q ss_pred             EEeCEEEEccCCCCCCc
Q 024975          153 ETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       153 ~~ad~VIlAtG~~s~~~  169 (259)
                      +++|+||.|+|..|..+
T Consensus       150 i~ad~vVgADG~~S~vR  166 (392)
T PRK08243        150 LDCDFIAGCDGFHGVSR  166 (392)
T ss_pred             EEeCEEEECCCCCCchh
Confidence            89999999999887654

>PRK05868 hypothetical protein; Validated

Probab=99.42  E-value=1e-12  Score=107.06  Aligned_cols=157  Identities=15%  Similarity=0.106  Sum_probs=84.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCc---eeeeCCCCC--CCCCCCCCCCCCccccccccceeccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (259)
                      |+||+||||||+|+++|..|+++|++|+|+|+.+.+..   .....+...  ...++.... ..........+...... 
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~-~~~~~~~~~~~~~~~~~-   78 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAA-AQEHKTRIRGASFVDRD-   78 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHH-HHhhccCccceEEEeCC-
Confidence            57999999999999999999999999999999876531   111111000  000010000 00000000000000000 


Q ss_pred             cceecCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975           77 LMGFQAYPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (259)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a  155 (259)
                      ...+........ ....... ..-..+.++.+.+.+.+ ..+++  ++++++|++++..+ +.+.|.++++.    ++++
T Consensus        79 g~~~~~~~~~~~-~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~--i~~~~~v~~i~~~~-~~v~v~~~dg~----~~~a  149 (372)
T PRK05868         79 GNELFRDTESTP-TGGPVNSPDIELLRDDLVELLYGAT-QPSVE--YLFDDSISTLQDDG-DSVRVTFERAA----AREF  149 (372)
T ss_pred             CCEEeecccccc-cCCCCCCceEEEEHHHHHHHHHHhc-cCCcE--EEeCCEEEEEEecC-CeEEEEECCCC----eEEe
Confidence            000000000000 0000000 00122455666554433 34777  99999999998764 67888888765    7899


Q ss_pred             CEEEEccCCCCCCc
Q 024975          156 DAVVVCNGHFSVPR  169 (259)
Q Consensus       156 d~VIlAtG~~s~~~  169 (259)
                      |.||.|.|..|..+
T Consensus       150 dlvIgADG~~S~vR  163 (372)
T PRK05868        150 DLVIGADGLHSNVR  163 (372)
T ss_pred             CEEEECCCCCchHH
Confidence            99999999877654

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.42  E-value=1.2e-12  Score=107.30  Aligned_cols=155  Identities=16%  Similarity=0.136  Sum_probs=83.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc----Cc----e-eeeCCCCC--CCCCCCCCCCCCccccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GG----S-WIYTSETE--SDPLGVDPNRYPVHSSLYKSLR   70 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~----gg----~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   70 (259)
                      ++||+||||||+|+++|..|++.|++|+|+|+.+..    .+    . ....++..  ...++....-.......+..+.
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~   82 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE   82 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence            479999999999999999999999999999986411    00    0 01111000  0001100000000000000000


Q ss_pred             ecc-ccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCC
Q 024975           71 VNL-PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD  148 (259)
Q Consensus        71 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~  148 (259)
                      ... ......+.......     .... ....+..+...|.+.+.+. +++  ++++++|++++..+ +.+.++++++. 
T Consensus        83 ~~~~~~~~~~~~~~~~~~-----~~~g-~~i~~~~l~~~L~~~~~~~~~i~--i~~~~~v~~~~~~~-~~~~v~~~~g~-  152 (384)
T PRK08849         83 TWEHPECRTRFHSDELNL-----DQLG-YIVENRLIQLGLWQQFAQYPNLT--LMCPEKLADLEFSA-EGNRVTLESGA-  152 (384)
T ss_pred             EEeCCCceEEecccccCC-----CccE-EEEEcHHHHHHHHHHHHhCCCeE--EECCCceeEEEEcC-CeEEEEECCCC-
Confidence            000 00000010000000     0000 1122345666665655443 577  89999999998876 66788887765 


Q ss_pred             ceEEEEeCEEEEccCCCCCCc
Q 024975          149 VVEEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       149 ~~~~~~ad~VIlAtG~~s~~~  169 (259)
                         .+++|.||.|+|..|..+
T Consensus       153 ---~~~~~lvIgADG~~S~vR  170 (384)
T PRK08849        153 ---EIEAKWVIGADGANSQVR  170 (384)
T ss_pred             ---EEEeeEEEEecCCCchhH
Confidence               899999999999877544

>PLN02697 lycopene epsilon cyclase

Probab=99.42  E-value=5.3e-12  Score=106.14  Aligned_cols=140  Identities=17%  Similarity=0.125  Sum_probs=81.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ++||+||||||+|+++|..|++.|++|+|+|+.......+-.+.. .....+...   .+. ..+.......+       
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~-~l~~lgl~~---~i~-~~w~~~~v~~~-------  175 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWED-EFKDLGLED---CIE-HVWRDTIVYLD-------  175 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchh-HHHhcCcHH---HHH-hhcCCcEEEec-------
Confidence            489999999999999999999999999999986333211100000 000000000   000 00000000000       


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEE-EEEecCCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKV-KSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v-~~~~g~~~~~~~~ad~VIl  160 (259)
                      +.  ...   ..........+..|.+.+.+.+.+.+++  + ++++|+++...+ +.+.+ ...++.    .+.++.||+
T Consensus       176 ~~--~~~---~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~--~-~~~~V~~I~~~~-~~~~vv~~~dG~----~i~A~lVI~  242 (529)
T PLN02697        176 DD--KPI---MIGRAYGRVSRTLLHEELLRRCVESGVS--Y-LSSKVDRITEAS-DGLRLVACEDGR----VIPCRLATV  242 (529)
T ss_pred             CC--cee---eccCcccEEcHHHHHHHHHHHHHhcCCE--E-EeeEEEEEEEcC-CcEEEEEEcCCc----EEECCEEEE
Confidence            00  000   0001111256688889998888888887  5 678999998765 44443 344443    799999999


Q ss_pred             ccCCCC
Q 024975          161 CNGHFS  166 (259)
Q Consensus       161 AtG~~s  166 (259)
                      |+|.++
T Consensus       243 AdG~~S  248 (529)
T PLN02697        243 ASGAAS  248 (529)
T ss_pred             CCCcCh
Confidence            999876

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.41  E-value=3.1e-12  Score=109.58  Aligned_cols=158  Identities=19%  Similarity=0.233  Sum_probs=87.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCc---eeeeCCCCC--CCCCCCCCCCCCccc-cccccceecccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPVHS-SLYKSLRVNLPR   75 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~   75 (259)
                      ++||+||||||+|+++|..|.+.|++|+|+|+.+.+..   .+...+...  ...++....  +... ..+.........
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~--l~~~~~~~~~~~~~~~~  100 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGER--MVDKGVSWNVGKVFLRD  100 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHH--HHhhCceeeceeEEeCC
Confidence            47999999999999999999999999999999875532   111111000  000011000  0000 000000000000


Q ss_pred             ccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEE
Q 024975           76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET  154 (259)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~  154 (259)
                        .....+...... ..........++..+.++|.+.+.+. +++  +++++++++++..+ +.+.+.+.+.++ ...+.
T Consensus       101 --~~~~~~~~~~~~-~~~~~~~~~~~q~~le~~L~~~~~~~~~v~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~~~i~  173 (547)
T PRK08132        101 --EEVYRFDLLPEP-GHRRPAFINLQQYYVEGYLVERAQALPNID--LRWKNKVTGLEQHD-DGVTLTVETPDG-PYTLE  173 (547)
T ss_pred             --CeEEEecCCCCC-CCCCCceEecCHHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEEcC-CEEEEEEECCCC-cEEEE
Confidence              000001100000 00000111134567778888888765 577  99999999999876 667776654332 24689


Q ss_pred             eCEEEEccCCCCCC
Q 024975          155 FDAVVVCNGHFSVP  168 (259)
Q Consensus       155 ad~VIlAtG~~s~~  168 (259)
                      +|+||.|+|.+|..
T Consensus       174 ad~vVgADG~~S~v  187 (547)
T PRK08132        174 ADWVIACDGARSPL  187 (547)
T ss_pred             eCEEEECCCCCcHH
Confidence            99999999977654

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.41  E-value=2.5e-12  Score=105.78  Aligned_cols=157  Identities=21%  Similarity=0.157  Sum_probs=85.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCc--eeeeCCCCC--CCCCCCCCCCCCccccccccceecccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG--SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPREL   77 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (259)
                      .+||+||||||+|+++|..|.++|++|+|+|+.+.+..  .+...+...  ....+.... .......+..+........
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~-~~~~~~~~~~~~~~~~~g~   85 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWAR-LAPHAAPLQSMRIVDATGR   85 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhh-hHhhcceeeEEEEEeCCCC
Confidence            36999999999999999999999999999999865421  010000000  000000000 0000000000000000000


Q ss_pred             -ceecCCCCCccCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975           78 -MGFQAYPFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (259)
Q Consensus        78 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a  155 (259)
                       .......+...  ........ ..++..+.+.|.+.+.+.+..  .+++++|++++..+ +.|.++++++.    .+++
T Consensus        86 ~~~~~~~~~~~~--~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~--~~~~~~v~~i~~~~-~~~~v~~~~g~----~~~a  156 (388)
T PRK07494         86 LIRAPEVRFRAA--EIGEDAFGYNIPNWLLNRALEARVAELPNI--TRFGDEAESVRPRE-DEVTVTLADGT----TLSA  156 (388)
T ss_pred             CCCCceEEEcHH--hcCCCccEEEeEhHHHHHHHHHHHhcCCCc--EEECCeeEEEEEcC-CeEEEEECCCC----EEEE
Confidence             00000000000  00000111 134577888888877766544  57799999998766 67888877654    7999


Q ss_pred             CEEEEccCCCCCC
Q 024975          156 DAVVVCNGHFSVP  168 (259)
Q Consensus       156 d~VIlAtG~~s~~  168 (259)
                      |.||.|+|.+|..
T Consensus       157 ~~vI~AdG~~S~v  169 (388)
T PRK07494        157 RLVVGADGRNSPV  169 (388)
T ss_pred             eEEEEecCCCchh
Confidence            9999999987643

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.41  E-value=9.7e-13  Score=107.49  Aligned_cols=153  Identities=10%  Similarity=0.098  Sum_probs=87.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc-------CceeeeCCCCC--CCCCCCCCCCCCccccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV-------GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVN   72 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~-------gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   72 (259)
                      |+||+||||||+|+++|..|.+.|++|+|+|+.+..       +......++..  .+.++.-..- .........+...
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l-~~~~~~~~~~~~~   79 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEEL-EKFVAEMQDIYVV   79 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHH-HhhcCCCcEEEEE
Confidence            589999999999999999999999999999986421       11111111100  0000100000 0000001111100


Q ss_pred             cccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CceeEEeceeEEEEEEeCCCcEEEEEEecCCceE
Q 024975           73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE  151 (259)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~  151 (259)
                      ... ......+....     .........+.++.+.|.+.+.+.+ ++  ++++++++++...+ +.+.+.+.++     
T Consensus        80 ~~~-g~~~~~~~~~~-----~~~~g~~v~r~~L~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~-~~v~v~~~~~-----  145 (374)
T PRK06617         80 DNK-ASEILDLRNDA-----DAVLGYVVKNSDFKKILLSKITNNPLIT--LIDNNQYQEVISHN-DYSIIKFDDK-----  145 (374)
T ss_pred             ECC-CceEEEecCCC-----CCCcEEEEEHHHHHHHHHHHHhcCCCcE--EECCCeEEEEEEcC-CeEEEEEcCC-----
Confidence            000 00000011000     0001112456889999988887764 66  88899999998776 6677777542     


Q ss_pred             EEEeCEEEEccCCCCCCc
Q 024975          152 EETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       152 ~~~ad~VIlAtG~~s~~~  169 (259)
                      .+++|.||.|+|.+|..+
T Consensus       146 ~~~adlvIgADG~~S~vR  163 (374)
T PRK06617        146 QIKCNLLIICDGANSKVR  163 (374)
T ss_pred             EEeeCEEEEeCCCCchhH
Confidence            699999999999877654

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.41  E-value=5.1e-12  Score=103.04  Aligned_cols=134  Identities=20%  Similarity=0.216  Sum_probs=83.7

Q ss_pred             eEEEECCChHHHHHHHHH--HHcCCcEEEEeeCCCcC--c--eeeeCCCCCCCCCCCCCCC-CCccccccccceeccccc
Q 024975            4 HVAVIGAGAAGLVVGHEL--LREGHTVVVYEKGEQVG--G--SWIYTSETESDPLGVDPNR-YPVHSSLYKSLRVNLPRE   76 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L--~~~g~~v~v~e~~~~~g--g--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   76 (259)
                      ||+||||||+|+++|.+|  .+.|.+|+|+|+.+..+  .  +|...        ...... ..+-...+.......+..
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~--------~~~~~~~~~~v~~~w~~~~v~~~~~   72 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFW--------EKDLGPLDSLVSHRWSGWRVYFPDG   72 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccc--------cccccchHHHHheecCceEEEeCCC
Confidence            899999999999999999  66799999999987652  1  12111        000000 000001111111111111


Q ss_pred             cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (259)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad  156 (259)
                      .....            ........+..|.+++.+.+. .+..  +.++++|++++..+ ..+.+.+.+|.    .++++
T Consensus        73 ~~~~~------------~~~Y~~i~~~~f~~~l~~~~~-~~~~--~~~~~~V~~i~~~~-~~~~v~~~~g~----~i~a~  132 (374)
T PF05834_consen   73 SRILI------------DYPYCMIDRADFYEFLLERAA-AGGV--IRLNARVTSIEETG-DGVLVVLADGR----TIRAR  132 (374)
T ss_pred             ceEEc------------ccceEEEEHHHHHHHHHHHhh-hCCe--EEEccEEEEEEecC-ceEEEEECCCC----EEEee
Confidence            10000            011122466889999988887 4444  68889999999886 56778888765    89999


Q ss_pred             EEEEccCCC
Q 024975          157 AVVVCNGHF  165 (259)
Q Consensus       157 ~VIlAtG~~  165 (259)
                      .||.|+|..
T Consensus       133 ~VvDa~g~~  141 (374)
T PF05834_consen  133 VVVDARGPS  141 (374)
T ss_pred             EEEECCCcc
Confidence            999999953

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.40  E-value=6.6e-12  Score=104.84  Aligned_cols=161  Identities=21%  Similarity=0.232  Sum_probs=90.4

Q ss_pred             eEEEECCChHHHHHHHHHHHcC-CcEEEEeeCCCcCceeeeCCCCCCCCC-------CCCCCCC------------Cccc
Q 024975            4 HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPL-------GVDPNRY------------PVHS   63 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~~~gg~~~~~~~~~~~~~-------~~~~~~~------------~~~~   63 (259)
                      ||+|||+|.+|+++|+.++++| .+|+|+||.+..||.............       +......            ....
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP   80 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence            7999999999999999999999 999999999887765443221110000       0000000            0000


Q ss_pred             cccccceeccccccceec--CCCCCccC---CC-CCCCCCC-----CCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEE
Q 024975           64 SLYKSLRVNLPRELMGFQ--AYPFVARN---YE-GSVDLRR-----YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR  132 (259)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~-~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~  132 (259)
                      .....+....+. ...|.  ...+....   .. .......     ......+...|.+.+.+.+++  ++++++|+++.
T Consensus        81 ~l~~~~~~~~~~-~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~--i~~~~~v~~l~  157 (439)
T TIGR01813        81 ELVRILAEESAD-AVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGID--TRLNSKVEDLI  157 (439)
T ss_pred             HHHHHHHhccHH-HHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCE--EEeCCEeeEeE
Confidence            000000111100 00000  11110000   00 0000001     123357888888888899999  99999999999


Q ss_pred             EeCC-CcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          133 LVES-NKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       133 ~~~~-~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      .+++ ..+.+...+.++....+.++.||+|||.++.
T Consensus       158 ~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       158 QDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             ECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence            8643 3444555543444446789999999998765

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.39  E-value=2.6e-12  Score=107.93  Aligned_cols=170  Identities=18%  Similarity=0.221  Sum_probs=117.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~---g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (259)
                      ..+++|||-|++|..+...+.+.   -.++++|-..+++.    ++.                      .+......   
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n----Y~R----------------------i~Ls~vl~---   53 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN----YNR----------------------ILLSSVLA---   53 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc----ccc----------------------eeeccccC---
Confidence            46899999999999999999984   35899987765431    100                      00000000   


Q ss_pred             eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                          -+.               ..+++.-.-.++..+.++.  ++.+.+|+.+.+..   -.|.++.|.    .+.+|.+
T Consensus        54 ----~~~---------------~~edi~l~~~dwy~~~~i~--L~~~~~v~~idr~~---k~V~t~~g~----~~~YDkL  105 (793)
T COG1251          54 ----GEK---------------TAEDISLNRNDWYEENGIT--LYTGEKVIQIDRAN---KVVTTDAGR----TVSYDKL  105 (793)
T ss_pred             ----CCc---------------cHHHHhccchhhHHHcCcE--EEcCCeeEEeccCc---ceEEccCCc----Eeeccee
Confidence                000               0144444445666788998  99999999998754   567777765    8999999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCCceEEcccCCC---CCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI---PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       159 IlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |+|||  |.|.++++||...+.-..+-......   ......++-+|||+|+-|+|+|..|...|-+++|++=.+
T Consensus       106 ilATG--S~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~  178 (793)
T COG1251         106 IIATG--SYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP  178 (793)
T ss_pred             EEecC--ccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc
Confidence            99999  89999999998864222221111000   001123557999999999999999999999999888877

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.39  E-value=1.9e-12  Score=112.61  Aligned_cols=157  Identities=27%  Similarity=0.352  Sum_probs=105.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+|||+||+||+||-.|.+.|+.|+|+||.+++||...+.         ..                          
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg---------ip-------------------------- 1829 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG---------IP-------------------------- 1829 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec---------CC--------------------------
Confidence            3689999999999999999999999999999999999998873         10                          


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .+..  .              ..+.+.-.+++.+.|++  +..++++-+-.         ..+.     -.-..|.||+|
T Consensus      1830 nmkl--d--------------k~vv~rrv~ll~~egi~--f~tn~eigk~v---------s~d~-----l~~~~daiv~a 1877 (2142)
T KOG0399|consen 1830 NMKL--D--------------KFVVQRRVDLLEQEGIR--FVTNTEIGKHV---------SLDE-----LKKENDAIVLA 1877 (2142)
T ss_pred             ccch--h--------------HHHHHHHHHHHHhhCce--EEeeccccccc---------cHHH-----HhhccCeEEEE
Confidence            1110  0              34455556666777988  77776654321         1111     12457999999


Q ss_pred             cCCCCCCccCCCCCCCC----CCC--------ceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccC-eEEEE
Q 024975          162 NGHFSVPRLAQVPGIDS----WPG--------KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIA  226 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~----~~~--------~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~-~v~~~  226 (259)
                      +|+ ..|+-.++||-+.    |+-        ....+...-.....++++|+|||||.+|-|....-.++|. .|.-+
T Consensus      1878 ~gs-t~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ 1954 (2142)
T KOG0399|consen 1878 TGS-TTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNF 1954 (2142)
T ss_pred             eCC-CCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecce
Confidence            997 5677777777653    100        0111111011123468999999999999998887777764 44444

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.39  E-value=8.5e-12  Score=105.56  Aligned_cols=163  Identities=18%  Similarity=0.204  Sum_probs=88.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCC-------CCCCCCC-CC-----------cc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-------LGVDPNR-YP-----------VH   62 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~-------~~~~~~~-~~-----------~~   62 (259)
                      .+||||||+|.+|+++|+.+++.|.+|+|+||.+..||............       .+..... .+           ..
T Consensus        61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d  140 (506)
T PRK06481         61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTND  140 (506)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence            47999999999999999999999999999999988876543221111000       0000000 00           00


Q ss_pred             ccccccceecccccccee-c--CCCCCccCC-CCCCCCC-CCC-----CHHHHHHHHHHHHHHhCCceeEEeceeEEEEE
Q 024975           63 SSLYKSLRVNLPRELMGF-Q--AYPFVARNY-EGSVDLR-RYP-----GHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR  132 (259)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~-~~~~~~~-~~~-----~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~  132 (259)
                      ......+..+... ...| .  ..++..... ....... .+|     ....+...|.+.+.+.+++  ++++++|+++.
T Consensus       141 ~~l~~~~~~~s~~-~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~--i~~~t~v~~l~  217 (506)
T PRK06481        141 KALLRYFVDNSAS-AIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIP--LFVNADVTKIT  217 (506)
T ss_pred             HHHHHHHHhccHH-HHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCe--EEeCCeeEEEE
Confidence            0000000000000 0000 0  000100000 0000000 111     1245677777888888999  99999999998


Q ss_pred             EeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          133 LVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       133 ~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ..++....+.....++....+.++.||+|||.++.
T Consensus       218 ~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~  252 (506)
T PRK06481        218 EKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGA  252 (506)
T ss_pred             ecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence            65423334555443334457899999999997654

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.38  E-value=8.1e-12  Score=105.71  Aligned_cols=63  Identities=21%  Similarity=0.244  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+...+...+.+.|.+  +..+++|+++...+ +.|.|.+.++.++...+.++.||.|+|.|+..
T Consensus       155 ~rl~~~l~~~a~~~Ga~--i~~~~~V~~i~~~~-~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~  217 (502)
T PRK13369        155 ARLVVLNALDAAERGAT--ILTRTRCVSARREG-GLWRVETRDADGETRTVRARALVNAAGPWVTD  217 (502)
T ss_pred             HHHHHHHHHHHHHCCCE--EecCcEEEEEEEcC-CEEEEEEEeCCCCEEEEEecEEEECCCccHHH
Confidence            56666777777888999  99999999998875 67888877755555679999999999987643

>PLN02661 Putative thiazole synthesis

Probab=99.37  E-value=1.3e-11  Score=97.50  Aligned_cols=140  Identities=16%  Similarity=0.087  Sum_probs=79.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc-CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~-g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      .+||+|||||++|+++|+.|.+. |.+|+|+|++..+||.......        ..............+..         
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~--------l~~~~vv~~~a~e~LeE---------  154 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQ--------LFSAMVVRKPAHLFLDE---------  154 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcc--------cccccccccHHHHHHHH---------
Confidence            47999999999999999999986 8999999999888764432110        00000000000000000         


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHH-HhCCceeEEeceeEEEEEEeCCCcEEEEE------EecCC----c
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR-EFGVDQVVRLHTEVLNARLVESNKWKVKS------RKKDD----V  149 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~~~~v~~i~~~~~~~~~v~~------~~g~~----~  149 (259)
                      ...+++..     .....-.+...+...|.+.+. +.+++  ++.++.++++..+++....+.+      .++..    .
T Consensus       155 lGV~fd~~-----dgy~vv~ha~e~~stLi~ka~~~~gVk--I~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~d  227 (357)
T PLN02661        155 LGVPYDEQ-----ENYVVIKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMD  227 (357)
T ss_pred             cCCCcccC-----CCeeEecchHHHHHHHHHHHHhcCCCE--EEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccc
Confidence            01122110     000000122445555555443 45788  9999999999876543333332      12111    2


Q ss_pred             eEEEEeCEEEEccCCC
Q 024975          150 VEEETFDAVVVCNGHF  165 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~  165 (259)
                      ...+.+++||+|||+.
T Consensus       228 p~~I~AkaVVlATGh~  243 (357)
T PLN02661        228 PNVMEAKVVVSSCGHD  243 (357)
T ss_pred             eeEEECCEEEEcCCCC
Confidence            2468999999999964

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.37  E-value=1.2e-11  Score=100.29  Aligned_cols=61  Identities=25%  Similarity=0.333  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      .++...+.+.+++.|.+  ++++++|+++++.+++.+.+.+.+|+   ..++|++||.|.|.++.+
T Consensus       153 ~~~t~~l~e~a~~~g~~--i~ln~eV~~i~~~~dg~~~~~~~~g~---~~~~ak~Vin~AGl~Ad~  213 (429)
T COG0579         153 GELTRALAEEAQANGVE--LRLNTEVTGIEKQSDGVFVLNTSNGE---ETLEAKFVINAAGLYADP  213 (429)
T ss_pred             HHHHHHHHHHHHHcCCE--EEecCeeeEEEEeCCceEEEEecCCc---EEEEeeEEEECCchhHHH
Confidence            56777888888888999  99999999999987446777777765   229999999999986644

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.37  E-value=4.7e-12  Score=104.42  Aligned_cols=60  Identities=18%  Similarity=0.167  Sum_probs=46.4

Q ss_pred             CHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          101 GHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       101 ~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      .+..+.+.|.+.+.+. +++  ++++++|+++...+ +.|.+.+.++.    .+.+|.||.|+|.+|.
T Consensus       110 ~~~~l~~~l~~~~~~~~g~~--~~~~~~v~~i~~~~-~~~~v~~~~g~----~~~a~~vI~AdG~~S~  170 (395)
T PRK05732        110 ELHDVGQRLFALLDKAPGVT--LHCPARVANVERTQ-GSVRVTLDDGE----TLTGRLLVAADGSHSA  170 (395)
T ss_pred             EhHHHHHHHHHHHhcCCCcE--EEcCCEEEEEEEcC-CeEEEEECCCC----EEEeCEEEEecCCChh
Confidence            3466777777766553 677  88999999998765 67888877654    6899999999997664

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.37  E-value=5.8e-12  Score=103.41  Aligned_cols=156  Identities=20%  Similarity=0.213  Sum_probs=83.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc------CceeeeCCCCC--CCCCCCCCCCCCccccccccceec
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV------GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVN   72 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~------gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   72 (259)
                      |++||+||||||+|+++|..|.+.|++|+|+|+.+..      +... ..++..  ...++....... .......+...
T Consensus         1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~-l~~~~~~~L~~lGl~~~l~~-~~~~~~~~~~~   78 (390)
T TIGR02360         1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGV-LEQGTVDLLREAGVDERMDR-EGLVHEGTEIA   78 (390)
T ss_pred             CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEee-ECHHHHHHHHHCCChHHHHh-cCceecceEEe
Confidence            6789999999999999999999999999999998742      1111 111000  000010000000 00000000000


Q ss_pred             cccccceecCCCCCccCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEE-ecCCce
Q 024975           73 LPRELMGFQAYPFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR-KKDDVV  150 (259)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~-~g~~~~  150 (259)
                      ...   .....++...    ...... ...+..+...|.+.+.+.++.  ++++.+++.+...++....|.+. +|  ..
T Consensus        79 ~~~---~~~~~~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~g~~--~~~~~~~v~~~~~~~~~~~V~~~~~g--~~  147 (390)
T TIGR02360        79 FDG---QRFRIDLKAL----TGGKTVMVYGQTEVTRDLMEAREAAGLT--TVYDADDVRLHDLAGDRPYVTFERDG--ER  147 (390)
T ss_pred             eCC---EEEEEecccc----CCCceEEEeCHHHHHHHHHHHHHhcCCe--EEEeeeeEEEEecCCCccEEEEEECC--eE
Confidence            000   0000111100    000000 112345666666666667777  88888888776533345667665 33  22


Q ss_pred             EEEEeCEEEEccCCCCCCc
Q 024975          151 EEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       151 ~~~~ad~VIlAtG~~s~~~  169 (259)
                      ..+++|.||.|.|.+|..+
T Consensus       148 ~~i~adlvIGADG~~S~VR  166 (390)
T TIGR02360       148 HRLDCDFIAGCDGFHGVSR  166 (390)
T ss_pred             EEEEeCEEEECCCCchhhH
Confidence            4689999999999887654

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.37  E-value=1.6e-11  Score=103.82  Aligned_cols=63  Identities=19%  Similarity=0.190  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEccCCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+...+...+.+.|++  +..+++|+++..++ +.|.+.+.+. +++...+.++.||+|+|.|+..
T Consensus       155 ~rl~~~l~~~A~~~Ga~--i~~~~~V~~i~~~~-~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~  218 (508)
T PRK12266        155 ARLVVLNARDAAERGAE--ILTRTRVVSARREN-GLWHVTLEDTATGKRYTVRARALVNAAGPWVKQ  218 (508)
T ss_pred             HHHHHHHHHHHHHcCCE--EEcCcEEEEEEEeC-CEEEEEEEEcCCCCEEEEEcCEEEECCCccHHH
Confidence            45556666677788998  99999999998765 6688877652 2334579999999999987743

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.37  E-value=8.7e-12  Score=102.62  Aligned_cols=57  Identities=21%  Similarity=0.265  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975          102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      ...+.+.|.+.+.+.|++  ++++++|++++..+ +.|.|.+.++     .+.+|.||+|+|.++
T Consensus       148 ~~~l~~aL~~~~~~~Gv~--i~~~~~V~~i~~~~-~~~~V~~~~g-----~i~ad~vV~A~G~~s  204 (393)
T PRK11728        148 YRAVAEAMAELIQARGGE--IRLGAEVTALDEHA-NGVVVRTTQG-----EYEARTLINCAGLMS  204 (393)
T ss_pred             HHHHHHHHHHHHHhCCCE--EEcCCEEEEEEecC-CeEEEEECCC-----EEEeCEEEECCCcch
Confidence            367888888888888998  99999999998765 5677766542     689999999999876

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.36  E-value=3.4e-12  Score=106.31  Aligned_cols=63  Identities=14%  Similarity=0.150  Sum_probs=48.5

Q ss_pred             CHHHHHHHHHHHHHHhC---CceeEEeceeEEEEEEe------CCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCc
Q 024975          101 GHEEVLRYLQNFAREFG---VDQVVRLHTEVLNARLV------ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       101 ~~~~~~~~l~~~~~~~~---~~~~v~~~~~v~~i~~~------~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~  169 (259)
                      ++..+.+.|.+.+.+.+   ++  ++++++|++++..      ++..++|.+.++.    ++++|+||.|.|..|..+
T Consensus       115 ~~~~l~~~L~~~~~~~~~~~v~--i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~----~i~a~llVgADG~~S~vR  186 (437)
T TIGR01989       115 ENDNIQNSLYNRLQEYNGDNVK--ILNPARLISVTIPSKYPNDNSNWVHITLSDGQ----VLYTKLLIGADGSNSNVR  186 (437)
T ss_pred             EHHHHHHHHHHHHHhCCCCCeE--EecCCeeEEEEeccccccCCCCceEEEEcCCC----EEEeeEEEEecCCCChhH
Confidence            45778888888777664   77  9999999999753      1245777777654    899999999999877654

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.35  E-value=4.2e-12  Score=104.93  Aligned_cols=156  Identities=15%  Similarity=0.078  Sum_probs=83.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC-CCc--Cce-----eeeCCCCC--CCCCCCCCCCCCcccccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQV--GGS-----WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRV   71 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~-~~~--gg~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   71 (259)
                      .+||+||||||+|+++|..|.+.|++|+|+|+. +..  +..     ....++..  ...++....-.......+..+..
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~   83 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV   83 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence            369999999999999999999999999999996 211  100     00000000  00001000000000000001111


Q ss_pred             ccccccceecCCCCCccCCCCCCCCCC-CCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           72 NLPRELMGFQAYPFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                      ..... .....++....    ...... ...+..+...|.+.+.+. +++  ++++++|++++..+ +.+.|.+.++.  
T Consensus        84 ~~~~~-~~~~~~~~~~~----~~~~~g~~~~~~~l~~~L~~~~~~~~~v~--v~~~~~v~~i~~~~-~~~~v~~~~g~--  153 (405)
T PRK08850         84 WEQDS-FARIEFDAESM----AQPDLGHIVENRVIQLALLEQVQKQDNVT--LLMPARCQSIAVGE-SEAWLTLDNGQ--  153 (405)
T ss_pred             EeCCC-CceEEEecccc----CCCccEEEEEHHHHHHHHHHHHhcCCCeE--EEcCCeeEEEEeeC-CeEEEEECCCC--
Confidence            00000 00000000000    000000 122355666676666554 677  89999999998776 66778887654  


Q ss_pred             eEEEEeCEEEEccCCCCCCc
Q 024975          150 VEEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~~~  169 (259)
                        .+++|.||.|+|..|..+
T Consensus       154 --~~~a~lvIgADG~~S~vR  171 (405)
T PRK08850        154 --ALTAKLVVGADGANSWLR  171 (405)
T ss_pred             --EEEeCEEEEeCCCCChhH
Confidence              799999999999766543

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.34  E-value=4.6e-13  Score=110.90  Aligned_cols=147  Identities=23%  Similarity=0.240  Sum_probs=35.7

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY   83 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (259)
                      ||||||||++|++||..+++.|.+|+|+|+.+.+||...........  ...... ......+..+......    ....
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~--~~~~~~-~~~~gi~~e~~~~~~~----~~~~   73 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFD--GNHDED-QVIGGIFREFLNRLRA----RGGY   73 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EET--TEEHHH-HHHHHHHHHHHHST----------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChh--hcchhh-ccCCCHHHHHHHHHhh----hccc
Confidence            89999999999999999999999999999999999876542100000  000000 0000011111111100    0000


Q ss_pred             CCCccCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           84 PFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        84 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                      +....    ..+.. .......+...+.+.+.+.|++  +++++.|+++..+++..+.|.+.+..+ ...+.|+.+|.||
T Consensus        74 ~~~~~----~~~~~~~~~~~~~~~~~l~~~l~e~gv~--v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~IDaT  146 (428)
T PF12831_consen   74 PQEDR----YGWVSNVPFDPEVFKAVLDEMLAEAGVE--VLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFIDAT  146 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccc----cccccccccccccccccccccccccccc--ccccccccccccccccccccccccccc-ccccccccccccc
Confidence            00000    00110 1122255666777777778999  999999999998765556666665322 4689999999999


Q ss_pred             CC
Q 024975          163 GH  164 (259)
Q Consensus       163 G~  164 (259)
                      |-
T Consensus       147 G~  148 (428)
T PF12831_consen  147 GD  148 (428)
T ss_dssp             --
T ss_pred             cc
Confidence            94

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.33  E-value=9.1e-12  Score=103.24  Aligned_cols=150  Identities=13%  Similarity=0.121  Sum_probs=83.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcC-CcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCC---CCcccccccc--cee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNR---YPVHSSLYKS--LRV   71 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~--~~~   71 (259)
                      .+|+|||||++||++|..|.++| ++|+|+|+.+.++   ......++..  ...++.....   ..........  +..
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~   80 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW   80 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence            37999999999999999999998 6999999987653   2222221110  0001110000   0000000000  000


Q ss_pred             ccccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceE
Q 024975           72 NLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE  151 (259)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~  151 (259)
                      ..... ..+......      .........+.++.+.|.+.+.  +..  ++++++|++++..+ +.|++.+.++.    
T Consensus        81 ~~~~~-~~~~~~~~~------~~~~~~~i~R~~l~~~L~~~~~--~~~--v~~~~~v~~i~~~~-~~~~v~~~~g~----  144 (414)
T TIGR03219        81 RNGSD-ASYLGATIA------PGVGQSSVHRADFLDALLKHLP--EGI--ASFGKRATQIEEQA-EEVQVLFTDGT----  144 (414)
T ss_pred             EecCc-cceeeeecc------ccCCcccCCHHHHHHHHHHhCC--Cce--EEcCCEEEEEEecC-CcEEEEEcCCC----
Confidence            00000 000000000      0011112456677777666542  234  78899999998866 67889887765    


Q ss_pred             EEEeCEEEEccCCCCCC
Q 024975          152 EETFDAVVVCNGHFSVP  168 (259)
Q Consensus       152 ~~~ad~VIlAtG~~s~~  168 (259)
                      .+.+|.||.|+|.+|..
T Consensus       145 ~~~ad~vVgADG~~S~v  161 (414)
T TIGR03219       145 EYRCDLLIGADGIKSAL  161 (414)
T ss_pred             EEEeeEEEECCCccHHH
Confidence            79999999999987753

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.33  E-value=7.3e-12  Score=102.59  Aligned_cols=61  Identities=18%  Similarity=0.184  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCccC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA  171 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~~  171 (259)
                      ..+...+.+.+.+.+++  ++.+++|+++...+ +.+.|.+.++     .+.+|.||+|+|.++....+
T Consensus       149 ~~~~~~~~~~~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g-----~~~a~~vV~A~G~~~~~l~~  209 (376)
T PRK11259        149 ELAIKAHLRLAREAGAE--LLFNEPVTAIEADG-DGVTVTTADG-----TYEAKKLVVSAGAWVKDLLP  209 (376)
T ss_pred             HHHHHHHHHHHHHCCCE--EECCCEEEEEEeeC-CeEEEEeCCC-----EEEeeEEEEecCcchhhhcc
Confidence            56666677777778998  89999999999865 5677776653     58999999999987654433

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.33  E-value=5.5e-11  Score=74.73  Aligned_cols=80  Identities=23%  Similarity=0.370  Sum_probs=67.4

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY   83 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (259)
                      +++|||||+.|+-+|..|.+.|.+|+++++.+.+.                                             
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~---------------------------------------------   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL---------------------------------------------   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS---------------------------------------------
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh---------------------------------------------
Confidence            58999999999999999999999999999987541                                             


Q ss_pred             CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec
Q 024975           84 PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK  146 (259)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g  146 (259)
                                   +.+.  .++..++.+.+++.|++  +++++.+.++..++++ +.|.+++|
T Consensus        36 -------------~~~~--~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~~~-~~V~~~~g   80 (80)
T PF00070_consen   36 -------------PGFD--PDAAKILEEYLRKRGVE--VHTNTKVKEIEKDGDG-VEVTLEDG   80 (80)
T ss_dssp             -------------TTSS--HHHHHHHHHHHHHTTEE--EEESEEEEEEEEETTS-EEEEEETS
T ss_pred             -------------hhcC--HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCE-EEEEEecC
Confidence                         0011  78888999999999999  9999999999998744 66877764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.32  E-value=4.2e-13  Score=109.00  Aligned_cols=58  Identities=26%  Similarity=0.338  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEE-EEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~-v~~~~g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+.+.+.+.+++.|++  ++.+++|+++..++ +.|. |.+.++     .+.+|.||+|+|.++..
T Consensus       147 ~~l~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~-~~v~gv~~~~g-----~i~ad~vV~a~G~~s~~  205 (358)
T PF01266_consen  147 RRLIQALAAEAQRAGVE--IRTGTEVTSIDVDG-GRVTGVRTSDG-----EIRADRVVLAAGAWSPQ  205 (358)
T ss_dssp             HHHHHHHHHHHHHTT-E--EEESEEEEEEEEET-TEEEEEEETTE-----EEEECEEEE--GGGHHH
T ss_pred             cchhhhhHHHHHHhhhh--ccccccccchhhcc-ccccccccccc-----ccccceeEeccccccee
Confidence            78889999999999999  99999999999987 6677 888774     49999999999986544

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK07121 hypothetical protein; Validated

Probab=99.31  E-value=3.7e-11  Score=101.60  Aligned_cols=63  Identities=19%  Similarity=0.232  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC-CcEEEEEEecCCceEEEEe-CEEEEccCCCCC
Q 024975          102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETF-DAVVVCNGHFSV  167 (259)
Q Consensus       102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~a-d~VIlAtG~~s~  167 (259)
                      ...+...|.+.+++.+++  ++++++|+++..+++ ....|...+ +++...+.+ +.||+|||.++.
T Consensus       176 g~~~~~~L~~~~~~~gv~--i~~~~~v~~l~~~~~g~v~Gv~~~~-~~~~~~i~a~k~VVlAtGg~~~  240 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQ--IRYDTRATRLIVDDDGRVVGVEARR-YGETVAIRARKGVVLAAGGFAM  240 (492)
T ss_pred             hHHHHHHHHHHHHhCCCE--EEeCCEEEEEEECCCCCEEEEEEEe-CCcEEEEEeCCEEEECCCCcCc
Confidence            456778888888888998  999999999987643 344555544 233456889 999999997664

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.30  E-value=2.6e-11  Score=102.37  Aligned_cols=146  Identities=18%  Similarity=0.156  Sum_probs=80.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC-CcCce-eeeCCCCCCCCCCCCCCCCCccccccccceecccc--cc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGS-WIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPR--EL   77 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~-~~gg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   77 (259)
                      .|||+|||||++|+.||..+++.|.+|+++|++. .+|+. |....       +....     ......+......  ..
T Consensus         4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~Cnpsi-------GG~ak-----g~lvrEidalGg~~g~~   71 (618)
T PRK05192          4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAI-------GGIAK-----GHLVREIDALGGEMGKA   71 (618)
T ss_pred             cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCcccc-------ccchh-----hHHHHHHHhcCCHHHHH
Confidence            5899999999999999999999999999999973 55531 11100       00000     0000000000000  00


Q ss_pred             ceecCCCCCccCCCCC--CC-CCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEE
Q 024975           78 MGFQAYPFVARNYEGS--VD-LRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE  153 (259)
Q Consensus        78 ~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~  153 (259)
                      .+-....+......+.  .+ ...-..+..+...+.+.+.+. +++  + ++.+|+++...++....|.+.+|.    .+
T Consensus        72 ~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~--I-~q~~V~~Li~e~grV~GV~t~dG~----~I  144 (618)
T PRK05192         72 IDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLD--L-FQGEVEDLIVENGRVVGVVTQDGL----EF  144 (618)
T ss_pred             HhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcE--E-EEeEEEEEEecCCEEEEEEECCCC----EE
Confidence            0000000000000000  00 011123466777777777655 666  4 577888887765344457776654    79


Q ss_pred             EeCEEEEccCCCC
Q 024975          154 TFDAVVVCNGHFS  166 (259)
Q Consensus       154 ~ad~VIlAtG~~s  166 (259)
                      .|+.||+|||.+.
T Consensus       145 ~Ak~VIlATGTFL  157 (618)
T PRK05192        145 RAKAVVLTTGTFL  157 (618)
T ss_pred             ECCEEEEeeCcch
Confidence            9999999999654

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.30  E-value=6.2e-11  Score=102.60  Aligned_cols=167  Identities=16%  Similarity=0.068  Sum_probs=88.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc-CCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCcc-ccccccceeccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVH-SSLYKSLRVNLP   74 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~-g~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~   74 (259)
                      .+||+||||||+||++|..|++. |++|+|+|+.+.+.   ......++..  ...++....  +.. ...........+
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~--l~~~g~~~~~~~~~~~  109 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAER--ILKEAYWINETAFWKP  109 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHH--HHhhcccccceEEEcC
Confidence            46999999999999999999995 99999999986431   1111111000  000111000  000 000000000000


Q ss_pred             cc--cceecCCC-CCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC--CcEEEEEEec---
Q 024975           75 RE--LMGFQAYP-FVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES--NKWKVKSRKK---  146 (259)
Q Consensus        75 ~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~--~~~~v~~~~g---  146 (259)
                      ..  ...+.... ................++..+.+.|.+.+.+.+..-.+.+++++++++..++  ..+++++++.   
T Consensus       110 ~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~  189 (634)
T PRK08294        110 DPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGE  189 (634)
T ss_pred             CCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCC
Confidence            00  00000000 0000000000111223456677888888877654212788999999987642  3477777653   


Q ss_pred             -CCceEEEEeCEEEEccCCCCCCcc
Q 024975          147 -DDVVEEETFDAVVVCNGHFSVPRL  170 (259)
Q Consensus       147 -~~~~~~~~ad~VIlAtG~~s~~~~  170 (259)
                       ++..+++++|+||.|.|..|..+.
T Consensus       190 ~~g~~~tv~A~~lVGaDGa~S~VR~  214 (634)
T PRK08294        190 HEGEEETVRAKYVVGCDGARSRVRK  214 (634)
T ss_pred             CCCceEEEEeCEEEECCCCchHHHH
Confidence             243468999999999998776553

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.29  E-value=7.7e-11  Score=97.66  Aligned_cols=62  Identities=23%  Similarity=0.242  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCC-ceEEEEeCEEEEccCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD-VVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~-~~~~~~ad~VIlAtG~~s~  167 (259)
                      ..+...+.+.+++.|++  ++.+++|++++..+ +.|.+.+.++.+ +...+++|+||+|+|.++.
T Consensus       197 ~~~~~~l~~~a~~~G~~--i~~~~~V~~i~~~~-~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~  259 (410)
T PRK12409        197 HKFTTGLAAACARLGVQ--FRYGQEVTSIKTDG-GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR  259 (410)
T ss_pred             HHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC-CEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence            46677777888888998  99999999998765 567766554321 0136899999999998764

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.29  E-value=5.8e-11  Score=101.68  Aligned_cols=163  Identities=18%  Similarity=0.081  Sum_probs=89.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCC----CCCCCC------------CCccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL----GVDPNR------------YPVHSSL   65 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~----~~~~~~------------~~~~~~~   65 (259)
                      .+||+|||+|.+|++||..+.+.|.+|+|+||.+..++.............    +.....            .......
T Consensus         5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~   84 (566)
T PRK06452          5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDA   84 (566)
T ss_pred             cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHH
Confidence            479999999999999999999999999999998765544322211111000    000000            0000001


Q ss_pred             cccceeccccccceec--CCCCCccCC----CCCCCCCCC--------CCHHHHHHHHHHHHHHhCCceeEEeceeEEEE
Q 024975           66 YKSLRVNLPRELMGFQ--AYPFVARNY----EGSVDLRRY--------PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNA  131 (259)
Q Consensus        66 ~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i  131 (259)
                      ...+....+.....+.  ..+|.....    ........+        .....+...|.+.+.+.+++  +..++.++++
T Consensus        85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~~~~L  162 (566)
T PRK06452         85 AELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVD--FYNEWFSLDL  162 (566)
T ss_pred             HHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCE--EEeCcEEEEE
Confidence            1111111111000000  112211000    000000111        12356677777777777888  9999999999


Q ss_pred             EEeCCCcEEEEEEec-CCceEEEEeCEEEEccCCCC
Q 024975          132 RLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       132 ~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s  166 (259)
                      ..+++....+...+. ++....+.++.||+|||.++
T Consensus       163 i~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  198 (566)
T PRK06452        163 VTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG  198 (566)
T ss_pred             EEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence            986534444655543 34456789999999999765

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.29  E-value=3.6e-11  Score=104.01  Aligned_cols=38  Identities=37%  Similarity=0.307  Sum_probs=34.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG   39 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg   39 (259)
                      .+||+|||+|.+|++||..+++.|.+|+|+||....++
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g   45 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA   45 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            47999999999999999999999999999999876544

>PRK06996 hypothetical protein; Provisional

Probab=99.29  E-value=2.1e-11  Score=100.54  Aligned_cols=150  Identities=14%  Similarity=0.112  Sum_probs=85.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC----CcEEEEeeCCCcCc-----eeeeCCCCC--CCCCCCCCCCCCccccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG----HTVVVYEKGEQVGG-----SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLR   70 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g----~~v~v~e~~~~~gg-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   70 (259)
                      .+||+||||||+|+++|..|++.|    ++|+|+|+.+....     .....+...  ...++.-..    ....+..+.
T Consensus        11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~----~~~~~~~~~   86 (398)
T PRK06996         11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA----DATPIEHIH   86 (398)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh----cCCcccEEE
Confidence            579999999999999999999987    47999999753210     000000000  000010000    000000000


Q ss_pred             eccccccceecCCCCCccCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           71 VNLPRELMGFQAYPFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                      ...... .+...+.....    ...... ..++..+.+.|.+.+.+.+++  +.+++++++++..+ +.+++.+.++++.
T Consensus        87 ~~~~~~-~g~~~~~~~~~----~~~~~g~~v~r~~l~~~L~~~~~~~g~~--~~~~~~v~~~~~~~-~~v~v~~~~~~g~  158 (398)
T PRK06996         87 VSQRGH-FGRTLIDRDDH----DVPALGYVVRYGSLVAALARAVRGTPVR--WLTSTTAHAPAQDA-DGVTLALGTPQGA  158 (398)
T ss_pred             EecCCC-CceEEeccccc----CCCcCEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeeeeeeecC-CeEEEEECCCCcc
Confidence            000000 00000000000    001111 235578889999998888888  99999999998765 6788887754332


Q ss_pred             eEEEEeCEEEEccCC
Q 024975          150 VEEETFDAVVVCNGH  164 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~  164 (259)
                       ..+++|+||.|+|.
T Consensus       159 -~~i~a~lvIgADG~  172 (398)
T PRK06996        159 -RTLRARIAVQAEGG  172 (398)
T ss_pred             -eEEeeeEEEECCCC
Confidence             47999999999995

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.29  E-value=1.2e-11  Score=102.68  Aligned_cols=65  Identities=25%  Similarity=0.312  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ....+...+.+.+++.+++  ++++++++++..+++....+...+ .++....+.++.||+|||.++.
T Consensus       139 ~g~~~~~~l~~~~~~~gv~--i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVD--IRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEE--EEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             cHHHHHHHHHHHHhhcCee--eeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            3467888889999999998  999999999999865455577763 3466678999999999997664

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.28  E-value=3.3e-11  Score=102.95  Aligned_cols=162  Identities=15%  Similarity=0.169  Sum_probs=86.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC-cCceeeeCCCCCCCCCCCCCCC------------CCcccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ-VGGSWIYTSETESDPLGVDPNR------------YPVHSSLYKS   68 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~-~gg~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~   68 (259)
                      .+||+|||+|.+|++||..+ +.|.+|+|+||.+. .||...................            ..........
T Consensus         7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~~   85 (543)
T PRK06263          7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVEI   85 (543)
T ss_pred             ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHHH
Confidence            47999999999999999999 99999999999764 3433222111000000000000            0000011111


Q ss_pred             ceeccccccceec--CCCCCccCC----CCCCCCCCCC--------CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEe
Q 024975           69 LRVNLPRELMGFQ--AYPFVARNY----EGSVDLRRYP--------GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV  134 (259)
Q Consensus        69 ~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~  134 (259)
                      +....+.....+.  ..++.....    ........++        ....+...|.+.+.+.+++  +++++.++++..+
T Consensus        86 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~t~v~~Li~~  163 (543)
T PRK06263         86 LVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIK--ILEEVMAIKLIVD  163 (543)
T ss_pred             HHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCE--EEeCeEeeeeEEe
Confidence            1111111100000  111111000    0000001111        2356777787777778898  9999999999876


Q ss_pred             CCC-cEEEEEEe-cCCceEEEEeCEEEEccCCCC
Q 024975          135 ESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       135 ~~~-~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      +++ ...+...+ .++....+.++.||+|||.++
T Consensus       164 ~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~  197 (543)
T PRK06263        164 ENREVIGAIFLDLRNGEIFPIYAKATILATGGAG  197 (543)
T ss_pred             CCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence            533 34444433 344456789999999999765

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.28  E-value=5.4e-11  Score=104.02  Aligned_cols=58  Identities=21%  Similarity=0.306  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+...+.+.+.+ +++  ++++++|+++...+ +.|.|.+.++.    .+.+|.||+|+|.++..
T Consensus       408 ~~l~~aL~~~a~~-Gv~--i~~~~~V~~i~~~~-~~~~v~t~~g~----~~~ad~VV~A~G~~s~~  465 (662)
T PRK01747        408 AELCRALLALAGQ-QLT--IHFGHEVARLERED-DGWQLDFAGGT----LASAPVVVLANGHDAAR  465 (662)
T ss_pred             HHHHHHHHHhccc-CcE--EEeCCEeeEEEEeC-CEEEEEECCCc----EEECCEEEECCCCCccc
Confidence            6777778777777 888  89999999998876 67888776543    57899999999987643

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.28  E-value=4.7e-11  Score=103.03  Aligned_cols=165  Identities=13%  Similarity=0.138  Sum_probs=90.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCC--CCCC------------CCccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGV--DPNR------------YPVHSSLYK   67 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~--~~~~------------~~~~~~~~~   67 (259)
                      .+||+|||+|.+|++||..+++.|.+|+|+||....++...............  ....            .........
T Consensus        29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv~  108 (617)
T PTZ00139         29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAIQ  108 (617)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence            46999999999999999999999999999999876665433221111100000  0000            000000111


Q ss_pred             cceeccccccceec--CCCCCccCC------CCCCCC-----------CCC---CCHHHHHHHHHHHHHHhCCceeEEec
Q 024975           68 SLRVNLPRELMGFQ--AYPFVARNY------EGSVDL-----------RRY---PGHEEVLRYLQNFAREFGVDQVVRLH  125 (259)
Q Consensus        68 ~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~-----------~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~  125 (259)
                      .+....+.....+.  ..+|.....      ......           ..+   .....+...|.+.+.+.+++  +..+
T Consensus       109 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~--i~~~  186 (617)
T PTZ00139        109 YMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCN--FFIE  186 (617)
T ss_pred             HHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCE--EEec
Confidence            11111111110011  111111000      000000           000   12457788888888888998  9999


Q ss_pred             eeEEEEEE-eCCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCCC
Q 024975          126 TEVLNARL-VESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       126 ~~v~~i~~-~~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      +.++++.. .++....+...+ .++....+.++.||+|||.+...
T Consensus       187 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  231 (617)
T PTZ00139        187 YFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA  231 (617)
T ss_pred             eEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence            99999887 332333354422 34556788999999999986543

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.27  E-value=6.8e-11  Score=100.78  Aligned_cols=164  Identities=22%  Similarity=0.160  Sum_probs=88.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCC------------CCCccccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN------------RYPVHSSLYKSL   69 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~   69 (259)
                      .+||+|||+|.+|++||..+++.|.+|+|+||....+|.............+....            ...........+
T Consensus        16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~   95 (541)
T PRK07804         16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSL   95 (541)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            47999999999999999999999999999999887654333221111000000000            000000011111


Q ss_pred             eeccccccceec--CCCCCccCC------CCCC---CCCCC----CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEe
Q 024975           70 RVNLPRELMGFQ--AYPFVARNY------EGSV---DLRRY----PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV  134 (259)
Q Consensus        70 ~~~~~~~~~~~~--~~~~~~~~~------~~~~---~~~~~----~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~  134 (259)
                      ....+.....+.  ..++.....      ....   ....+    .....+...|.+.+.+.+++  ++.++.|+++...
T Consensus        96 ~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~--i~~~~~v~~Li~~  173 (541)
T PRK07804         96 VAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLD--IREHALALDLLTD  173 (541)
T ss_pred             HHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCE--EEECeEeeeeEEc
Confidence            111111000000  111111000      0000   00011    13467888888888888888  9999999999876


Q ss_pred             CC-CcEEEEEEe----cCCceEEEEeCEEEEccCCCCC
Q 024975          135 ES-NKWKVKSRK----KDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       135 ~~-~~~~v~~~~----g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ++ ....+...+    .++....+.++.||+|||.++.
T Consensus       174 ~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~  211 (541)
T PRK07804        174 GTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ  211 (541)
T ss_pred             CCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence            42 333344431    1122357899999999998664

>PLN02985 squalene monooxygenase

Probab=99.27  E-value=1.2e-10  Score=98.39  Aligned_cols=162  Identities=16%  Similarity=0.152  Sum_probs=82.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCce-ee--eCCCCC--CCCCCCCCCCCCccccccccceeccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS-WI--YTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~-~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (259)
                      ++||+|||||++|+++|..|++.|.+|+|+|+....... +.  ..++..  ...++...............+.......
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~  122 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK  122 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence            589999999999999999999999999999997432110 10  000000  0000110000000000011111100000


Q ss_pred             cceecCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEE
Q 024975           77 LMGFQAYPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET  154 (259)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~  154 (259)
                      .. ...++....  ...... ....++.++.+.|.+.+.+. +++  +.. .+++++..+++....|.+...+++...+.
T Consensus       123 ~~-~~~~~~~~~--~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~--i~~-gtvv~li~~~~~v~gV~~~~~dG~~~~~~  196 (514)
T PLN02985        123 EA-VAPFPVDNN--NFPYEPSARSFHNGRFVQRLRQKASSLPNVR--LEE-GTVKSLIEEKGVIKGVTYKNSAGEETTAL  196 (514)
T ss_pred             EE-EEeCCCCCc--CCCcccceeeeecHHHHHHHHHHHHhCCCeE--EEe-eeEEEEEEcCCEEEEEEEEcCCCCEEEEE
Confidence            00 011111000  000000 11234578888888888765 566  554 46777765542223455544344445678


Q ss_pred             eCEEEEccCCCCCCc
Q 024975          155 FDAVVVCNGHFSVPR  169 (259)
Q Consensus       155 ad~VIlAtG~~s~~~  169 (259)
                      +|.||.|+|.+|..+
T Consensus       197 AdLVVgADG~~S~vR  211 (514)
T PLN02985        197 APLTVVCDGCYSNLR  211 (514)
T ss_pred             CCEEEECCCCchHHH
Confidence            999999999877644

>TIGR00551 nadB L-aspartate oxidase

Probab=99.27  E-value=9.3e-11  Score=98.96  Aligned_cols=162  Identities=20%  Similarity=0.156  Sum_probs=86.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCC------------CCCccccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN------------RYPVHSSLYKSL   69 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~   69 (259)
                      .+||+|||+|.+|++||..+.+.|. |+|+||.+..+|..................            ...........+
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~   80 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV   80 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence            4799999999999999999999997 999999876655433221111000000000            000000011111


Q ss_pred             eeccccccceec--CCCCCccCC------CCC--CCCCCC----CCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEe
Q 024975           70 RVNLPRELMGFQ--AYPFVARNY------EGS--VDLRRY----PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLV  134 (259)
Q Consensus        70 ~~~~~~~~~~~~--~~~~~~~~~------~~~--~~~~~~----~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~  134 (259)
                      ....+.....+.  ..++.....      ...  .....+    .....+...|.+.+.+ .+++  ++.++.|+++..+
T Consensus        81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~--i~~~~~v~~l~~~  158 (488)
T TIGR00551        81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIR--IIEGENALDLLIE  158 (488)
T ss_pred             HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcE--EEECeEeeeeecc
Confidence            111110000000  111111000      000  000111    1235777888888876 5888  9999999999875


Q ss_pred             CCCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          135 ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       135 ~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ++....+...+. +....+.++.||+|||.++.
T Consensus       159 ~g~v~Gv~~~~~-~~~~~i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       159 TGRVVGVWVWNR-ETVETCHADAVVLATGGAGK  190 (488)
T ss_pred             CCEEEEEEEEEC-CcEEEEEcCEEEECCCcccC
Confidence            423333555543 33357899999999998764

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.26  E-value=4.6e-11  Score=99.16  Aligned_cols=161  Identities=14%  Similarity=0.116  Sum_probs=81.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-----------CCccccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-----------YPVHSSLYKSLR   70 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~   70 (259)
                      .+||+|||+|.+|++||..+. .|.+|+|+||.+..++...................           ..........+.
T Consensus         4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~~   82 (433)
T PRK06175          4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKILA   82 (433)
T ss_pred             cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            479999999999999999984 79999999999877654322211110000000000           000000011111


Q ss_pred             eccccccceecC--CCCCccC----C-CCCCC--CC-CC---CCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCC
Q 024975           71 VNLPRELMGFQA--YPFVARN----Y-EGSVD--LR-RY---PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVES  136 (259)
Q Consensus        71 ~~~~~~~~~~~~--~~~~~~~----~-~~~~~--~~-~~---~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~  136 (259)
                      ..++.....+.+  .++....    . .....  .+ .+   .....+...|.+.+.+ .+++  +++++++++|..+++
T Consensus        83 ~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~--i~~~t~v~~Li~~~~  160 (433)
T PRK06175         83 NESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNIT--IIENCYLVDIIENDN  160 (433)
T ss_pred             HHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCE--EEECcEeeeeEecCC
Confidence            111100000000  1111000    0 00000  00 01   1234566666666654 5898  999999999986553


Q ss_pred             CcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975          137 NKWKVKSRKKDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       137 ~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      ..+.+.... ++....+.++.||+|||.++
T Consensus       161 ~v~Gv~~~~-~g~~~~i~Ak~VILAtGG~~  189 (433)
T PRK06175        161 TCIGAICLK-DNKQINIYSKVTILATGGIG  189 (433)
T ss_pred             EEEEEEEEE-CCcEEEEEcCeEEEccCccc
Confidence            334443332 22334689999999999754

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.26  E-value=5.5e-11  Score=99.72  Aligned_cols=155  Identities=19%  Similarity=0.253  Sum_probs=81.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC------------CCccccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR------------YPVHSSLYKSL   69 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~   69 (259)
                      |+||+|||+|++|++||..+++.|.+|+|+||....+.++... .............            ..........+
T Consensus         1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~-ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~   79 (466)
T PRK08401          1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQ-AGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNV   79 (466)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHc-CCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            5899999999999999999999999999999985432221111 0000000000000            00000001111


Q ss_pred             eeccccccceec--CCCCCccCCCCCCCCCCCC--------CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcE
Q 024975           70 RVNLPRELMGFQ--AYPFVARNYEGSVDLRRYP--------GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW  139 (259)
Q Consensus        70 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~  139 (259)
                      ..+.+.....+.  ..++....   ......|+        ....+.+.|.+.+.+.+++  +... .++.+...++...
T Consensus        80 ~~~~~~~i~~L~~~Gv~f~~~~---~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~-~v~~l~~~~g~v~  153 (466)
T PRK08401         80 ISKSSEAYDFLTSLGLEFEGNE---LEGGHSFPRVFTIKNETGKHIIKILYKHARELGVN--FIRG-FAEELAIKNGKAY  153 (466)
T ss_pred             HHHHHHHHHHHHHcCCCcccCC---CcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCE--EEEe-EeEEEEeeCCEEE
Confidence            111111000000  11111100   00011111        2356788888888888888  7655 7888876542223


Q ss_pred             EEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975          140 KVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       140 ~v~~~~g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      .+.. ++    ..+.++.||+|||.++..
T Consensus       154 Gv~~-~g----~~i~a~~VVLATGG~~~~  177 (466)
T PRK08401        154 GVFL-DG----ELLKFDATVIATGGFSGL  177 (466)
T ss_pred             EEEE-CC----EEEEeCeEEECCCcCcCC
Confidence            3444 22    368999999999987653

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.26  E-value=7.9e-11  Score=101.29  Aligned_cols=162  Identities=18%  Similarity=0.180  Sum_probs=84.9

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCC---CCCCCCC------------CCcccccccc
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP---LGVDPNR------------YPVHSSLYKS   68 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~---~~~~~~~------------~~~~~~~~~~   68 (259)
                      ||+|||+|++|++||..+++.|.+|+|+||.+..++............   .......            ..........
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~   80 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY   80 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence            799999999999999999999999999999876554322211110000   0000000            0000000001


Q ss_pred             ceeccccccceec--CCCCCccCC------CCC---CCCCCC---CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEe
Q 024975           69 LRVNLPRELMGFQ--AYPFVARNY------EGS---VDLRRY---PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV  134 (259)
Q Consensus        69 ~~~~~~~~~~~~~--~~~~~~~~~------~~~---~~~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~  134 (259)
                      +..+.+.....+.  ..++.....      ...   .....|   .....+...|.+.+.+.+++  +++++.++++...
T Consensus        81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~v~~L~~~  158 (566)
T TIGR01812        81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVS--FFNEYFALDLIHD  158 (566)
T ss_pred             HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCE--EEeccEEEEEEEe
Confidence            1111110000000  011110000      000   000011   12346677777777777998  9999999999876


Q ss_pred             CCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975          135 ESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       135 ~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ++....+...+ .++....+.++.||+|||.++.
T Consensus       159 ~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~  192 (566)
T TIGR01812       159 DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR  192 (566)
T ss_pred             CCEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence            53323344332 2344457899999999997653

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.26  E-value=3.7e-11  Score=98.57  Aligned_cols=57  Identities=32%  Similarity=0.358  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ..+.+.+.+.+++.+++  ++.+++|+++...+ +.+.|.+.++     .+.+|.||+|+|.++.
T Consensus       145 ~~~~~~l~~~~~~~g~~--~~~~~~V~~i~~~~-~~~~v~~~~~-----~i~a~~vV~aaG~~~~  201 (380)
T TIGR01377       145 EKALRALQELAEAHGAT--VRDGTKVVEIEPTE-LLVTVKTTKG-----SYQANKLVVTAGAWTS  201 (380)
T ss_pred             HHHHHHHHHHHHHcCCE--EECCCeEEEEEecC-CeEEEEeCCC-----EEEeCEEEEecCcchH
Confidence            57778888888888998  99999999998765 6677766542     5899999999998654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.25  E-value=1.1e-10  Score=99.69  Aligned_cols=63  Identities=17%  Similarity=0.039  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEEccCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ..+...+...+.+.|++  +..+++|+++...+++.+.|.+.+.. ++...+.++.||+|+|.|+.
T Consensus       149 ~rl~~al~~~A~~~Ga~--i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~  212 (546)
T PRK11101        149 FRLTAANMLDAKEHGAQ--ILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ  212 (546)
T ss_pred             HHHHHHHHHHHHhCCCE--EEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence            55666667777788999  99999999998875344456664422 33357999999999998764

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.25  E-value=6e-11  Score=102.69  Aligned_cols=60  Identities=23%  Similarity=0.268  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEccCCCCCC
Q 024975          107 RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       107 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      +.|.+.+.+.+++  +++++.++++..+++....|...+. ++....+.++.||+|||+++..
T Consensus       174 ~~L~~~~~~~gV~--i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~  234 (640)
T PRK07573        174 QALSRQIAAGTVK--MYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV  234 (640)
T ss_pred             HHHHHHHHhcCCE--EEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence            4455566677898  9999999999876533444555542 3445678999999999986643

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.24  E-value=1.5e-10  Score=100.00  Aligned_cols=165  Identities=13%  Similarity=0.130  Sum_probs=89.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCC--CCC------------CCCccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGV--DPN------------RYPVHSSLYK   67 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~--~~~------------~~~~~~~~~~   67 (259)
                      .+||+|||+|.+|++||..+++.|.+|+|+||....++...............  ...            ..........
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~  129 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQ  129 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHH
Confidence            36999999999999999999999999999999876554332221111000000  000            0000011111


Q ss_pred             cceeccccccceec--CCCCCccCC------CCCCCC-----------CCC---CCHHHHHHHHHHHHHHhCCceeEEec
Q 024975           68 SLRVNLPRELMGFQ--AYPFVARNY------EGSVDL-----------RRY---PGHEEVLRYLQNFAREFGVDQVVRLH  125 (259)
Q Consensus        68 ~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~-----------~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~  125 (259)
                      .+..+.+.....+.  ..+|.....      ......           ..+   ..+..+...|.+.+.+.+++  +..+
T Consensus       130 ~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~--i~~~  207 (635)
T PLN00128        130 YMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQ--FFVE  207 (635)
T ss_pred             HHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCE--EEEe
Confidence            11111111111111  112211000      000000           001   13456777787777777888  9999


Q ss_pred             eeEEEEEEeC-CCcEEEEEEe-cCCceEEEEeCEEEEccCCCCCC
Q 024975          126 TEVLNARLVE-SNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       126 ~~v~~i~~~~-~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      +.++++..++ +....+...+ .++....+.++.||+|||.++..
T Consensus       208 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~  252 (635)
T PLN00128        208 YFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA  252 (635)
T ss_pred             eEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence            9999987653 2334454433 23556678999999999986643

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.24  E-value=8.1e-11  Score=101.38  Aligned_cols=165  Identities=15%  Similarity=0.117  Sum_probs=89.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCC--CCCC------------CCccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGV--DPNR------------YPVHSSLYK   67 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~--~~~~------------~~~~~~~~~   67 (259)
                      .+||+|||+|.+|++||..+++.|.+|+|+||....++...............  ....            .........
T Consensus        12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~   91 (598)
T PRK09078         12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDAIE   91 (598)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHHHH
Confidence            37999999999999999999999999999999876554432221111100000  0000            000000011


Q ss_pred             cceeccccccceec--CCCCCccCC------CCCCCC-----------CCC---CCHHHHHHHHHHHHHHhCCceeEEec
Q 024975           68 SLRVNLPRELMGFQ--AYPFVARNY------EGSVDL-----------RRY---PGHEEVLRYLQNFAREFGVDQVVRLH  125 (259)
Q Consensus        68 ~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~-----------~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~  125 (259)
                      .+..+++.....+.  ..++.....      ......           ..+   .....+...|.+.+.+.+++  +..+
T Consensus        92 ~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~--i~~~  169 (598)
T PRK09078         92 YMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAE--FFIE  169 (598)
T ss_pred             HHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCE--EEEe
Confidence            11111111000000  111110000      000000           001   12356777888878778898  9999


Q ss_pred             eeEEEEEEeCC-CcEEEEEEe-cCCceEEEEeCEEEEccCCCCCC
Q 024975          126 TEVLNARLVES-NKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       126 ~~v~~i~~~~~-~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      +.+++|..+++ ....+...+ .++....+.++.||+|||.+...
T Consensus       170 ~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  214 (598)
T PRK09078        170 YFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA  214 (598)
T ss_pred             EEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence            99999987642 344455432 23555678999999999986643

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.24  E-value=7.1e-11  Score=90.75  Aligned_cols=64  Identities=23%  Similarity=0.255  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC--CcEEEEEEecCCceEEEEeCEEEEccCCCCCCccCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES--NKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQ  172 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~--~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~  172 (259)
                      .+-.+.++..+.+.|+.  ++.+..|..+...+.  ....|.+.+++    .+.++.+|+|+|+|....+|.
T Consensus       153 ~kslk~~~~~~~~~G~i--~~dg~~v~~~~~~~e~~~~v~V~Tt~gs----~Y~akkiI~t~GaWi~klL~~  218 (399)
T KOG2820|consen  153 AKSLKALQDKARELGVI--FRDGEKVKFIKFVDEEGNHVSVQTTDGS----IYHAKKIIFTVGAWINKLLPT  218 (399)
T ss_pred             HHHHHHHHHHHHHcCeE--EecCcceeeEeeccCCCceeEEEeccCC----eeecceEEEEecHHHHhhcCc
Confidence            67788999999999999  999999999886432  45677787776    799999999999988777764

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.23  E-value=1.2e-10  Score=100.01  Aligned_cols=164  Identities=14%  Similarity=0.080  Sum_probs=89.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCC--CCC------------CCCccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGV--DPN------------RYPVHSSLYK   67 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~--~~~------------~~~~~~~~~~   67 (259)
                      .+||+|||+|.+||+||..+++.|.+|+|+||....+|.............+.  ...            ..........
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~   86 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE   86 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence            36999999999999999999999999999999866654432221111000000  000            0000011111


Q ss_pred             cceeccccccceec--CCCCCccCC------CCCCCCCC-----C--------CCHHHHHHHHHHHHHHhCCceeEEece
Q 024975           68 SLRVNLPRELMGFQ--AYPFVARNY------EGSVDLRR-----Y--------PGHEEVLRYLQNFAREFGVDQVVRLHT  126 (259)
Q Consensus        68 ~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~-----~--------~~~~~~~~~l~~~~~~~~~~~~v~~~~  126 (259)
                      .+..+.+.....+.  ..+|.....      ........     +        .....+...|.+.+.+.+++  ++.++
T Consensus        87 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~--i~~~~  164 (588)
T PRK08958         87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTT--IFSEW  164 (588)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCE--EEeCc
Confidence            11111111111111  122211000      00000000     1        12456777777777777888  99999


Q ss_pred             eEEEEEEe-CCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975          127 EVLNARLV-ESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       127 ~v~~i~~~-~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      .++++..+ ++....+...+ .++....+.++.||+|||.++.
T Consensus       165 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  207 (588)
T PRK08958        165 YALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR  207 (588)
T ss_pred             EEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence            99999875 32344454432 2355567899999999998654

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.23  E-value=2.2e-10  Score=98.54  Aligned_cols=165  Identities=13%  Similarity=0.060  Sum_probs=88.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCC----CCCC----------CCccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGV----DPNR----------YPVHSSLYK   67 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~----~~~~----------~~~~~~~~~   67 (259)
                      .+||+|||+|.+||+||..+++.|.+|+|+||....++...............    .+..          .+.......
T Consensus        12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~v~   91 (591)
T PRK07057         12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDAIE   91 (591)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHHHH
Confidence            47999999999999999999999999999999865554433221111100000    0000          000000111


Q ss_pred             cceeccccccceec--CCCCCccCC------CCCCCCC-----C-----C---CCHHHHHHHHHHHHHHhCCceeEEece
Q 024975           68 SLRVNLPRELMGFQ--AYPFVARNY------EGSVDLR-----R-----Y---PGHEEVLRYLQNFAREFGVDQVVRLHT  126 (259)
Q Consensus        68 ~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~-----~-----~---~~~~~~~~~l~~~~~~~~~~~~v~~~~  126 (259)
                      .+....+.....+.  ..++.....      .......     .     +   .....+...|.+.+.+.+++  +..++
T Consensus        92 ~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~--i~~~~  169 (591)
T PRK07057         92 FMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQ--FFVEW  169 (591)
T ss_pred             HHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCE--EEeCc
Confidence            11111111000000  111110000      0000000     0     1   12356777777777778998  99999


Q ss_pred             eEEEEEEeCC-CcEEEEEEe-cCCceEEEEeCEEEEccCCCCCC
Q 024975          127 EVLNARLVES-NKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       127 ~v~~i~~~~~-~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      .++++..+++ ....+...+ .++....+.++.||+|||.++..
T Consensus       170 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  213 (591)
T PRK07057        170 MALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI  213 (591)
T ss_pred             EEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence            9999987532 344455533 23445678899999999986543

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.22  E-value=2.7e-10  Score=98.30  Aligned_cols=162  Identities=13%  Similarity=0.053  Sum_probs=83.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCC--CCCCCCCCCCCC------------CCcccccc
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSE--TESDPLGVDPNR------------YPVHSSLY   66 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~--~~~~~~~~~~~~------------~~~~~~~~   66 (259)
                      +||+|||+|.+|++||..+++.  |.+|+|+||....++.. ....  ............            ........
T Consensus        12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv   90 (608)
T PRK06854         12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV   90 (608)
T ss_pred             eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence            6999999999999999999998  99999999987543322 1110  000000000000            00000000


Q ss_pred             ccceeccccccceec--CCCCCccCC---CCCCCCCCCCCHHHHHHHHHHHHHHhC-CceeEEeceeEEEEEEeCCCcEE
Q 024975           67 KSLRVNLPRELMGFQ--AYPFVARNY---EGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWK  140 (259)
Q Consensus        67 ~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~  140 (259)
                      ..+....+.....+.  ..++.....   ..............+...|.+.+.+.+ ++  ++.++.|+++..+++..+.
T Consensus        91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~--i~~~~~v~~Li~~~g~v~G  168 (608)
T PRK06854         91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDN--VLNRVFITDLLVDDNRIAG  168 (608)
T ss_pred             HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCE--EEeCCEEEEEEEeCCEEEE
Confidence            000000010000000  111111000   000000111234567777777776665 88  9999999999865533333


Q ss_pred             EEE-EecCCceEEEEeCEEEEccCCCCC
Q 024975          141 VKS-RKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       141 v~~-~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      +.. ...++....+.++.||+|||.++.
T Consensus       169 v~~~~~~~g~~~~i~AkaVILATGG~~~  196 (608)
T PRK06854        169 AVGFSVRENKFYVFKAKAVIVATGGAAG  196 (608)
T ss_pred             EEEEEccCCcEEEEECCEEEECCCchhh
Confidence            432 222344457899999999997664

>TIGR00136 gidA glucose-inhibited division protein A

Probab=99.22  E-value=3.5e-10  Score=95.49  Aligned_cols=147  Identities=18%  Similarity=0.133  Sum_probs=80.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccc--ccccee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP--RELMGF   80 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   80 (259)
                      |||+|||+|++|+.+|..+++.|.+|+|+|++....|.+.-++...    + ...     ......+.....  ....+.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~g----G-~a~-----g~l~rEidaLGG~~~~~~d~   70 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIG----G-PAK-----GILVKEIDALGGLMGKAADK   70 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCcccccc----c-ccc-----chhhhhhhcccchHHHHHHh
Confidence            6999999999999999999999999999999744332221111000    0 000     000000000000  000000


Q ss_pred             cCCCCCccCCCCC--CC-CCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEe-CCCcEEEEEEecCCceEEEEe
Q 024975           81 QAYPFVARNYEGS--VD-LRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLV-ESNKWKVKSRKKDDVVEEETF  155 (259)
Q Consensus        81 ~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~-~~~~~~v~~~~g~~~~~~~~a  155 (259)
                      ....+......+.  .+ ...-..+..+...+++.+.+. ++.  + +..+|+++... ++..+.|.+.++.    .+.|
T Consensus        71 ~~i~~r~ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~--I-le~~Vv~li~e~~g~V~GV~t~~G~----~I~A  143 (617)
T TIGR00136        71 AGLQFRVLNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLS--L-FQGEVEDLILEDNDEIKGVVTQDGL----KFRA  143 (617)
T ss_pred             hceeheecccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcE--E-EEeEEEEEEEecCCcEEEEEECCCC----EEEC
Confidence            0000000000000  00 011224467778888888776 554  4 56688888665 3345667777654    7999


Q ss_pred             CEEEEccCCCC
Q 024975          156 DAVVVCNGHFS  166 (259)
Q Consensus       156 d~VIlAtG~~s  166 (259)
                      +.||+|||.+.
T Consensus       144 d~VILATGtfL  154 (617)
T TIGR00136       144 KAVIITTGTFL  154 (617)
T ss_pred             CEEEEccCccc
Confidence            99999999874

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.21  E-value=1.9e-10  Score=98.86  Aligned_cols=164  Identities=21%  Similarity=0.225  Sum_probs=86.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcCceeeeCCCCCCCCC-CCCCC--C------------CCcccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPL-GVDPN--R------------YPVHSS   64 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~gg~~~~~~~~~~~~~-~~~~~--~------------~~~~~~   64 (259)
                      .+||+|||+|.+|++||..+++.|  .+|+|+||....++............. ...+.  .            ......
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~   82 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD   82 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence            479999999999999999999874  899999998765543322211110000 00000  0            000000


Q ss_pred             ccccceeccccccceec--CCCCCccCCC---------CCCCCCCC---CCHHHHHHHHHHHHHHhCCceeEEeceeEEE
Q 024975           65 LYKSLRVNLPRELMGFQ--AYPFVARNYE---------GSVDLRRY---PGHEEVLRYLQNFAREFGVDQVVRLHTEVLN  130 (259)
Q Consensus        65 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~  130 (259)
                      ....+..+.+.....+.  ..+|......         .......|   .....+...|.+.+.+.+++  +..++.|++
T Consensus        83 ~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~--i~~~t~v~~  160 (575)
T PRK05945         83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVT--IYDEWYVMR  160 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCE--EEeCcEEEE
Confidence            11111111111111111  1111110000         00000111   13356778888877778898  999999999


Q ss_pred             EEEeCCCcEEEEE-EecCCceEEEEeCEEEEccCCCCC
Q 024975          131 ARLVESNKWKVKS-RKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       131 i~~~~~~~~~v~~-~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      +..+++....+.. ...++....+.++.||+|||.++.
T Consensus       161 L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~  198 (575)
T PRK05945        161 LILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR  198 (575)
T ss_pred             EEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence            9875432222332 222334456899999999998654

>PRK08275 putative oxidoreductase; Provisional

Probab=99.20  E-value=2.4e-10  Score=97.91  Aligned_cols=65  Identities=9%  Similarity=-0.023  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC-cEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      .+..+.+.|.+.+.+.+++  +..++.|+++..++++ ...+...+ .++....+.++.||+|||..+.
T Consensus       135 ~G~~i~~~L~~~~~~~gv~--i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~  201 (554)
T PRK08275        135 EGHDIKKVLYRQLKRARVL--ITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR  201 (554)
T ss_pred             ChHHHHHHHHHHHHHCCCE--EEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence            3457888888888888998  9999999999876223 33344322 2344456899999999997543

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.20  E-value=1.7e-10  Score=94.19  Aligned_cols=34  Identities=29%  Similarity=0.489  Sum_probs=32.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      +||+|||||++|+++|++|+++|.+|+|+|+...
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            6999999999999999999999999999999763

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.20  E-value=1.5e-10  Score=97.97  Aligned_cols=162  Identities=17%  Similarity=0.150  Sum_probs=85.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC------------CCccccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR------------YPVHSSLYKSL   69 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~   69 (259)
                      .+||+|||+|.+|++||..+.+ |.+|+|+||.+..+|...................            ..........+
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~   81 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL   81 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence            4799999999999999999976 8999999998876655433221110000000000            00000011111


Q ss_pred             eeccccccceec--CCCCCccC-----C-CCCC--CCC-CC----CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEe
Q 024975           70 RVNLPRELMGFQ--AYPFVARN-----Y-EGSV--DLR-RY----PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV  134 (259)
Q Consensus        70 ~~~~~~~~~~~~--~~~~~~~~-----~-~~~~--~~~-~~----~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~  134 (259)
                      ....+.....+.  ..+|....     . ....  ... .+    .....+...|.+.+. .+++  ++.++.++++..+
T Consensus        82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~--i~~~~~v~~Li~~  158 (510)
T PRK08071         82 VEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVT--VVEQEMVIDLIIE  158 (510)
T ss_pred             HHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCE--EEECeEhhheeec
Confidence            111111100010  11111000     0 0000  000 01    122456666666654 5888  9999999999765


Q ss_pred             CCCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          135 ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       135 ~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ++....+...+.+++...+.++.||+|||.++.
T Consensus       159 ~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~  191 (510)
T PRK08071        159 NGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG  191 (510)
T ss_pred             CCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence            433344555554555567899999999997653

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.20  E-value=6.9e-11  Score=99.16  Aligned_cols=58  Identities=21%  Similarity=0.230  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCc
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~  169 (259)
                      .++...|.+.+.+.|++  ++.++.|++++. . +.+.|.+.++     .+.+|.||+|||.|+...
T Consensus       183 ~~l~~~L~~~a~~~Gv~--i~~~t~V~~i~~-~-~~~~v~t~~g-----~v~A~~VV~Atga~s~~l  240 (460)
T TIGR03329       183 GLLVRGLRRVALELGVE--IHENTPMTGLEE-G-QPAVVRTPDG-----QVTADKVVLALNAWMASH  240 (460)
T ss_pred             HHHHHHHHHHHHHcCCE--EECCCeEEEEee-C-CceEEEeCCc-----EEECCEEEEccccccccc
Confidence            67778888888889999  999999999975 2 5577776553     589999999999876543

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.20  E-value=6.2e-10  Score=92.34  Aligned_cols=164  Identities=22%  Similarity=0.264  Sum_probs=96.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCC---------------------------CCCCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE---------------------------SDPLGV   54 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~---------------------------~~~~~~   54 (259)
                      .+||+|||||+.|+.+|..++.+|++|+|+|+++.-.|+...+....                           ..++-.
T Consensus        12 ~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~v   91 (532)
T COG0578          12 EFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHLV   91 (532)
T ss_pred             CCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcccc
Confidence            58999999999999999999999999999999987766654432111                           111222


Q ss_pred             CCCCCCccccc--------------ccccee---cc-ccccceec-CCCCCccCCCCCCC-CCCCC----CHHHHHHHHH
Q 024975           55 DPNRYPVHSSL--------------YKSLRV---NL-PRELMGFQ-AYPFVARNYEGSVD-LRRYP----GHEEVLRYLQ  110 (259)
Q Consensus        55 ~~~~~~~~~~~--------------~~~~~~---~~-~~~~~~~~-~~~~~~~~~~~~~~-~~~~~----~~~~~~~~l~  110 (259)
                      .+....++...              |..+..   .. ........ ..+..+........ ...|+    ....+.....
T Consensus        92 ~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~a  171 (532)
T COG0578          92 EPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAANA  171 (532)
T ss_pred             ccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHHH
Confidence            22111111110              111110   00 00000000 00000000000000 11222    1144555566


Q ss_pred             HHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEEccCCCCCC
Q 024975          111 NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       111 ~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+.+.|..  +...++|+++.++. +.|.|+..+.. ++...++++.||.|||.|+..
T Consensus       172 ~~A~~~Ga~--il~~~~v~~~~re~-~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~  227 (532)
T COG0578         172 RDAAEHGAE--ILTYTRVESLRREG-GVWGVEVEDRETGETYEIRARAVVNAAGPWVDE  227 (532)
T ss_pred             HHHHhcccc--hhhcceeeeeeecC-CEEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence            666778888  99999999999987 48889988755 777889999999999988743

>PLN02815 L-aspartate oxidase

Probab=99.19  E-value=2.6e-10  Score=97.72  Aligned_cols=163  Identities=15%  Similarity=0.104  Sum_probs=86.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCC------------CCCccccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN------------RYPVHSSLYKSL   69 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~   69 (259)
                      .+||+|||+|.+||++|..+++.| +|+|+||.+..+|..................            ...........+
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~  107 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVRVV  107 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHHHH
Confidence            479999999999999999999999 9999999887765433322111100000000            000001111111


Q ss_pred             eeccccccceec--CCCCCccC-----C-CCCCC---CCCC---CCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEe
Q 024975           70 RVNLPRELMGFQ--AYPFVARN-----Y-EGSVD---LRRY---PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLV  134 (259)
Q Consensus        70 ~~~~~~~~~~~~--~~~~~~~~-----~-~~~~~---~~~~---~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~  134 (259)
                      ..+.+.....+.  ..+|....     . .....   ...+   .....+...|.+.+.+. +++  +..++.+++|..+
T Consensus       108 ~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~--i~~~~~~~~Li~~  185 (594)
T PLN02815        108 CTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNIT--FFEHHFAIDLLTS  185 (594)
T ss_pred             HHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCE--EEeceEhheeeee
Confidence            111111100000  11111000     0 00000   0001   13356667776666554 788  9999999999875


Q ss_pred             CCC----cEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975          135 ESN----KWKVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       135 ~~~----~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      +++    ...+...+ .++....+.++.||+|||.+..
T Consensus       186 ~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~  223 (594)
T PLN02815        186 QDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH  223 (594)
T ss_pred             cCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence            322    23455433 2455567899999999997653

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.19  E-value=3.5e-10  Score=97.36  Aligned_cols=63  Identities=21%  Similarity=0.113  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeC----CCcEEEEEEe-cCCceEEEEeCEEEEccCCCC
Q 024975          102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE----SNKWKVKSRK-KDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~----~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      ...+...|.+.+.+.+++  +..++.|+++..++    +....+...+ .++....+.++.||+|||.++
T Consensus       139 G~~i~~~L~~~~~~~gv~--i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        139 GHMILQTLYQNCVKHGVE--FFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             HHHHHHHHHHHHHhcCCE--EEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            356778888888888998  99999999998654    2333344322 234445789999999999865

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.18  E-value=2e-10  Score=96.20  Aligned_cols=59  Identities=25%  Similarity=0.353  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHH----hC--CceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975          103 EEVLRYLQNFARE----FG--VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       103 ~~~~~~l~~~~~~----~~--~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+...+.+.+++    .|  ++  ++++++|+++...+++.|.|.+.++     .+.+|+||+|+|.|+..
T Consensus       211 ~~L~~al~~~a~~~~~~~G~~v~--i~~~t~V~~I~~~~~~~~~V~T~~G-----~i~A~~VVvaAG~~S~~  275 (497)
T PTZ00383        211 QKLSESFVKHARRDALVPGKKIS--INLNTEVLNIERSNDSLYKIHTNRG-----EIRARFVVVSACGYSLL  275 (497)
T ss_pred             HHHHHHHHHHHHhhhhhcCCCEE--EEeCCEEEEEEecCCCeEEEEECCC-----EEEeCEEEECcChhHHH
Confidence            5677777777777    66  55  8899999999987546788887653     59999999999987753

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=99.18  E-value=7.7e-11  Score=101.07  Aligned_cols=159  Identities=19%  Similarity=0.199  Sum_probs=81.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc--C-c----eeeeCCCCC--CCCCCCCCCCCCcccccc--ccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV--G-G----SWIYTSETE--SDPLGVDPNRYPVHSSLY--KSLR   70 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~--g-g----~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~   70 (259)
                      +.+|+|||||++|+++|..|.+.|++|+|||+.+..  + |    .....++..  ...++.............  ..+.
T Consensus        81 ~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i~  160 (668)
T PLN02927         81 KSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRIN  160 (668)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccceee
Confidence            478999999999999999999999999999997521  1 1    000000000  000000000000000000  0000


Q ss_pred             ec-cccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           71 VN-LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        71 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                      .. .......+..+..................+..+.+.|.+.   .+.+ .++++++|++++..+ +.+++.+.++.  
T Consensus       161 ~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~a---lg~~-~i~~g~~V~~I~~~~-d~VtV~~~dG~--  233 (668)
T PLN02927        161 GLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARA---VGED-VIRNESNVVDFEDSG-DKVTVVLENGQ--  233 (668)
T ss_pred             eeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhh---CCCC-EEEcCCEEEEEEEeC-CEEEEEECCCC--
Confidence            00 0000000000000000000000001123566777776443   3333 267889999998765 67888887764  


Q ss_pred             eEEEEeCEEEEccCCCCCCc
Q 024975          150 VEEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~~~  169 (259)
                        .+.+|.||.|.|.+|..+
T Consensus       234 --ti~aDlVVGADG~~S~vR  251 (668)
T PLN02927        234 --RYEGDLLVGADGIWSKVR  251 (668)
T ss_pred             --EEEcCEEEECCCCCcHHH
Confidence              789999999999877544

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.17  E-value=5.5e-10  Score=95.84  Aligned_cols=164  Identities=15%  Similarity=0.119  Sum_probs=87.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC------------CCccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR------------YPVHSSLYK   67 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~   67 (259)
                      .+||+|||+|++|++||..+++.  |.+|+|+||....++.............+.....            .........
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~   82 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE   82 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence            47999999999999999999987  5799999998876665433322211111110000            000011111


Q ss_pred             cceeccccccceec--CCCCCccCC------CCCC--CC-CCC---CCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEE
Q 024975           68 SLRVNLPRELMGFQ--AYPFVARNY------EGSV--DL-RRY---PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNAR  132 (259)
Q Consensus        68 ~~~~~~~~~~~~~~--~~~~~~~~~------~~~~--~~-~~~---~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~  132 (259)
                      .+....+.....+.  ..+|.....      ....  .. ..+   .....+...|.+.+.+. ++.  +..++.++++.
T Consensus        83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~--i~~~~~v~~Li  160 (580)
T TIGR01176        83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIM--RYDEWFVTDLL  160 (580)
T ss_pred             HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCE--EEeCeEEEEEE
Confidence            11111111111111  112211000      0000  00 011   13456777777766553 677  88899999998


Q ss_pred             EeCCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975          133 LVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       133 ~~~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      .+++....+...+ .++....+.++.||+|||.++.
T Consensus       161 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  196 (580)
T TIGR01176       161 VDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGR  196 (580)
T ss_pred             eeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence            7653333333322 2344567899999999998664

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.17  E-value=2.5e-10  Score=94.85  Aligned_cols=57  Identities=26%  Similarity=0.284  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcE-EEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ..+...+.+.+.+.|++  ++.+++|++++..+ +.+ .+.+++     ..+.+|.||+|+|.++.
T Consensus       201 ~~~~~~l~~~~~~~G~~--i~~~~~V~~i~~~~-~~~~~v~t~~-----~~~~a~~VV~a~G~~~~  258 (416)
T PRK00711        201 QLFTQRLAAMAEQLGVK--FRFNTPVDGLLVEG-GRITGVQTGG-----GVITADAYVVALGSYST  258 (416)
T ss_pred             HHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CEEEEEEeCC-----cEEeCCEEEECCCcchH
Confidence            57777788888888998  99999999998765 444 455543     26899999999998764

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.17  E-value=3.2e-10  Score=97.59  Aligned_cols=163  Identities=13%  Similarity=0.076  Sum_probs=85.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC---CcEEEEeeCCCcCceeeeCCCCCCCCCCC--CCCC------------CCcccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG---HTVVVYEKGEQVGGSWIYTSETESDPLGV--DPNR------------YPVHSS   64 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g---~~v~v~e~~~~~gg~~~~~~~~~~~~~~~--~~~~------------~~~~~~   64 (259)
                      .+||+|||+|.+|++||..+++.|   .+|+|+||....++...............  ....            ......
T Consensus         5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d~~   84 (577)
T PRK06069          5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLADQD   84 (577)
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCCHH
Confidence            479999999999999999999998   89999999887665443322111111000  0000            000000


Q ss_pred             ccccceeccccccceec--CCCCCccCCC----CCCCCCCCC--------CHHHHHHHHHHHHHH-hCCceeEEeceeEE
Q 024975           65 LYKSLRVNLPRELMGFQ--AYPFVARNYE----GSVDLRRYP--------GHEEVLRYLQNFARE-FGVDQVVRLHTEVL  129 (259)
Q Consensus        65 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~--------~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~  129 (259)
                      ....+..+.+.....+.  ..++......    .......++        ....+...|.+.+.+ .+++  ++.++.++
T Consensus        85 lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~--i~~~~~v~  162 (577)
T PRK06069         85 AVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIH--FYDEHFVT  162 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCE--EEECCEEE
Confidence            11111111111100010  1111110000    000011111        234566667666655 5888  99999999


Q ss_pred             EEEEeCCCcEEEEEEe-cCCceEEEEeCEEEEccCCCC
Q 024975          130 NARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       130 ~i~~~~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      ++...++....+...+ .++....+.++.||+|||.++
T Consensus       163 ~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (577)
T PRK06069        163 SLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG  200 (577)
T ss_pred             EEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence            9987652223333322 234445789999999999764

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.15  E-value=5.7e-10  Score=96.03  Aligned_cols=164  Identities=15%  Similarity=0.122  Sum_probs=85.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCC---CCCCC------------CCcccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG---VDPNR------------YPVHSSLY   66 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~---~~~~~------------~~~~~~~~   66 (259)
                      +.||+|||+|.+|++||..+++.|.+|+|+||....++..............   .....            ........
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v   82 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPV   82 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHHH
Confidence            5799999999999999999999999999999987665433222111100000   00000            00000111


Q ss_pred             ccceeccccccceec--CCCCCccCC------CCC---CCCCCC---CCHHHHHHHHHHHHHHhC----CceeEEeceeE
Q 024975           67 KSLRVNLPRELMGFQ--AYPFVARNY------EGS---VDLRRY---PGHEEVLRYLQNFAREFG----VDQVVRLHTEV  128 (259)
Q Consensus        67 ~~~~~~~~~~~~~~~--~~~~~~~~~------~~~---~~~~~~---~~~~~~~~~l~~~~~~~~----~~~~v~~~~~v  128 (259)
                      ..+....+.....+.  ..+|.....      ...   .....+   .....+...|.+.+.+.+    ++  +..++.+
T Consensus        83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~--i~~~~~~  160 (589)
T PRK08641         83 KAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVT--KYEGWEF  160 (589)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcE--EEeeEEE
Confidence            111111111100010  112211000      000   000111   123566677777665543    55  7788899


Q ss_pred             EEEEEeCC-CcEEEEEEec-CCceEEEEeCEEEEccCCCCC
Q 024975          129 LNARLVES-NKWKVKSRKK-DDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       129 ~~i~~~~~-~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      +++...++ ....+...+. ++....+.++.||+|||.++.
T Consensus       161 ~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  201 (589)
T PRK08641        161 LGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI  201 (589)
T ss_pred             EEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence            99887532 3444555443 344567899999999998664

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.15  E-value=3.8e-10  Score=94.71  Aligned_cols=64  Identities=19%  Similarity=0.261  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEEccCCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+...+.+.+.+.|++  ++++++|++++..+++.|.+.+.+.+ ++...+++|+||+|+|.++..
T Consensus       178 ~~l~~aL~~~a~~~Gv~--i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~  242 (483)
T TIGR01320       178 GALTKQLLGYLVQNGTT--IRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALP  242 (483)
T ss_pred             HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHH
Confidence            56777888888788998  99999999999865456887654322 222468999999999987643

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.15  E-value=8.9e-10  Score=94.29  Aligned_cols=43  Identities=28%  Similarity=0.464  Sum_probs=38.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~   44 (259)
                      .+||+|||+|.+|+++|..|++.|.+|+|+|+.+..||++...
T Consensus         6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s   48 (557)
T PRK12844          6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMS   48 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceecee
Confidence            5899999999999999999999999999999998888765443

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.15  E-value=6e-10  Score=95.78  Aligned_cols=165  Identities=13%  Similarity=0.105  Sum_probs=85.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC------------CCccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR------------YPVHSSLYK   67 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~   67 (259)
                      .+||+|||+|.+||+||..+++.  +.+|+|+||....++...................            .........
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~   83 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVVE   83 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHHH
Confidence            47999999999999999999987  4799999998766654433221111110000000            000011111


Q ss_pred             cceeccccccceec--CCCCCccCC------CCCC--CCCC-C---CCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEE
Q 024975           68 SLRVNLPRELMGFQ--AYPFVARNY------EGSV--DLRR-Y---PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNAR  132 (259)
Q Consensus        68 ~~~~~~~~~~~~~~--~~~~~~~~~------~~~~--~~~~-~---~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~  132 (259)
                      .+..+++.....+.  ..+|.....      ....  ..+. +   .....+...|.+.+.+. +++  +..++.++++.
T Consensus        84 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~--i~~~~~v~~Li  161 (582)
T PRK09231         84 YFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQ--RFDEHFVLDIL  161 (582)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcE--EEeCeEEEEEE
Confidence            11111111110011  112211000      0000  0000 1   12345666666665554 677  88899999998


Q ss_pred             EeCCCcEEEEE-EecCCceEEEEeCEEEEccCCCCCC
Q 024975          133 LVESNKWKVKS-RKKDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       133 ~~~~~~~~v~~-~~g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      .+++....+.. ...++....+.++.||+|||.++..
T Consensus       162 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l  198 (582)
T PRK09231        162 VDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV  198 (582)
T ss_pred             EeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence            76533223332 2223445678999999999986643

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.15  E-value=1.6e-10  Score=92.67  Aligned_cols=141  Identities=18%  Similarity=0.219  Sum_probs=74.7

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEE-eeCCCcCceeeeCCCCCCCCCCCCCCCCCcc-ccccccceeccccccceec
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVY-EKGEQVGGSWIYTSETESDPLGVDPNRYPVH-SSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~-e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   81 (259)
                      ||+|||||.||+.||+.+++.|.+|+++ .+.+.++...            |.+...-.. ......+.... .......
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~------------Cnpsigg~~kg~L~~Eidalg-g~m~~~a   67 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS------------CNPSIGGIAKGHLVREIDALG-GLMGRAA   67 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S------------SSSEEESTTHHHHHHHHHHTT--SHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc------------chhhhccccccchhHHHhhhh-hHHHHHH
Confidence            8999999999999999999999999999 3334333211            111000000 00000000000 0000000


Q ss_pred             C---CCCCccCCCCCC--C-CCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEE
Q 024975           82 A---YPFVARNYEGSV--D-LRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET  154 (259)
Q Consensus        82 ~---~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~  154 (259)
                      +   ..+...+..++.  + ...-..+..|.+++++.+... +++  + .+.+|++|..+++..+.|.+.+|.    .+.
T Consensus        68 D~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~--i-~~~~V~~l~~e~~~v~GV~~~~g~----~~~  140 (392)
T PF01134_consen   68 DETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLT--I-IQGEVTDLIVENGKVKGVVTKDGE----EIE  140 (392)
T ss_dssp             HHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEE--E-EES-EEEEEECTTEEEEEEETTSE----EEE
T ss_pred             hHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeE--E-EEcccceEEecCCeEEEEEeCCCC----EEe
Confidence            0   000000000000  0 111245688999999988774 554  4 578999999876566678887764    899


Q ss_pred             eCEEEEccCC
Q 024975          155 FDAVVVCNGH  164 (259)
Q Consensus       155 ad~VIlAtG~  164 (259)
                      +|.||+|||.
T Consensus       141 a~~vVlaTGt  150 (392)
T PF01134_consen  141 ADAVVLATGT  150 (392)
T ss_dssp             ECEEEE-TTT
T ss_pred             cCEEEEeccc
Confidence            9999999995

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.15  E-value=1.2e-09  Score=91.34  Aligned_cols=64  Identities=19%  Similarity=0.329  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEccCCCCCC
Q 024975          103 EEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       103 ~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+.+.|.+.+.+ .+++  ++++++|+++...+++.|++.+.+. .++...++||+||+|+|+|+..
T Consensus       184 ~~L~~aL~~~l~~~~Gv~--i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~  249 (497)
T PRK13339        184 GALTRKLAKHLESHPNAQ--VKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIP  249 (497)
T ss_pred             HHHHHHHHHHHHhCCCcE--EEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHH
Confidence            4555666665543 4788  9999999999887447798875321 2212358999999999998743

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.15  E-value=3.9e-10  Score=96.34  Aligned_cols=43  Identities=28%  Similarity=0.424  Sum_probs=39.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS   45 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~   45 (259)
                      .+||+|||+| +|+++|..+++.|.+|+|+||.+.+||++....
T Consensus        16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~g   58 (564)
T PRK12845         16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSG   58 (564)
T ss_pred             eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcC
Confidence            5899999999 899999999999999999999988998876553

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.14  E-value=7.7e-10  Score=101.90  Aligned_cols=41  Identities=32%  Similarity=0.441  Sum_probs=37.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~   42 (259)
                      .+||+|||+|.+|++||..+++.|.+|+|+||.+..||...
T Consensus       409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~  449 (1167)
T PTZ00306        409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA  449 (1167)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence            47999999999999999999999999999999988887654

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.14  E-value=2e-09  Score=88.20  Aligned_cols=96  Identities=24%  Similarity=0.351  Sum_probs=77.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      ++++|||+|+.|+.+|..|.+.|.+|+++++.+.+...                                          
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------------  179 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS------------------------------------------  179 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch------------------------------------------
Confidence            57999999999999999999999999999997533100                                          


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                                     .++  ..+...+.+.+++.+++  +.+++++.++...+ +.+.+.+.++.    .+.+|.||+|+
T Consensus       180 ---------------~~~--~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~D~vI~a~  235 (377)
T PRK04965        180 ---------------LMP--PEVSSRLQHRLTEMGVH--LLLKSQLQGLEKTD-SGIRATLDSGR----SIEVDAVIAAA  235 (377)
T ss_pred             ---------------hCC--HHHHHHHHHHHHhCCCE--EEECCeEEEEEccC-CEEEEEEcCCc----EEECCEEEECc
Confidence                           001  55667777788888998  99999999998764 56777777654    79999999999


Q ss_pred             CC
Q 024975          163 GH  164 (259)
Q Consensus       163 G~  164 (259)
                      |.
T Consensus       236 G~  237 (377)
T PRK04965        236 GL  237 (377)
T ss_pred             CC
Confidence            94

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.14  E-value=1.6e-09  Score=93.29  Aligned_cols=43  Identities=37%  Similarity=0.491  Sum_probs=38.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~   44 (259)
                      .+||+|||+|++|+++|..++++|.+|+|+||....||.....
T Consensus         9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~s   51 (574)
T PRK12842          9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFS   51 (574)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCcccee
Confidence            4799999999999999999999999999999998887665443

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.14  E-value=5.4e-10  Score=91.93  Aligned_cols=59  Identities=22%  Similarity=0.141  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+.+.+...+.+.|... +..++.+..++... +.|.|.+.++     .+.+|.||+|+|.|+..
T Consensus       156 ~~~~~~l~~~~~~~G~~~-~~~~~~~~~~~~~~-~~~~v~t~~g-----~i~a~~vv~a~G~~~~~  214 (387)
T COG0665         156 RLLTRALAAAAEELGVVI-IEGGTPVTSLERDG-RVVGVETDGG-----TIEADKVVLAAGAWAGE  214 (387)
T ss_pred             HHHHHHHHHHHHhcCCeE-EEccceEEEEEecC-cEEEEEeCCc-----cEEeCEEEEcCchHHHH
Confidence            577778888888888541 66688888888753 5678888875     49999999999987543

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.13  E-value=1.2e-09  Score=93.63  Aligned_cols=42  Identities=36%  Similarity=0.610  Sum_probs=37.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC--CcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--QVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~--~~gg~~~~   43 (259)
                      .+||+|||+|.+||++|..+++.|.+|+|+||.+  ..||....
T Consensus         4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~~   47 (549)
T PRK12834          4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFW   47 (549)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCceec
Confidence            4799999999999999999999999999999998  66776543

>PRK12839 hypothetical protein; Provisional

Probab=99.13  E-value=1.4e-09  Score=93.15  Aligned_cols=43  Identities=33%  Similarity=0.492  Sum_probs=38.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~   44 (259)
                      .+||+|||+|.+|+++|+.|.+.|.+|+|+||...+||.+...
T Consensus         8 ~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~   50 (572)
T PRK12839          8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWS   50 (572)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccc
Confidence            4799999999999999999999999999999998888776543

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.13  E-value=1.1e-09  Score=89.17  Aligned_cols=134  Identities=17%  Similarity=0.242  Sum_probs=73.6

Q ss_pred             eEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCce--eeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            4 HVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGS--WIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      ||+|||||++|+++|.+|.+.  |++|+++|+.+..++.  |.......... .... ...+-...+..+....+.    
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~-~~~~-~~~~v~~~W~~~~v~~~~----   74 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDA-QHAW-LADLVQTDWPGYEVRFPK----   74 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchh-hhhh-hhhhheEeCCCCEEECcc----
Confidence            799999999999999999987  9999999998876653  33221000000 0000 000000011111111100    


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                           ....    ....+....+.+|.+++.+.+   +..  ++++++|+.+.  + +.+++  .+|.    .+.++.||
T Consensus        75 -----~~~~----l~~~Y~~I~r~~f~~~l~~~l---~~~--i~~~~~V~~v~--~-~~v~l--~dg~----~~~A~~VI  131 (370)
T TIGR01789        75 -----YRRK----LKTAYRSMTSTRFHEGLLQAF---PEG--VILGRKAVGLD--A-DGVDL--APGT----RINARSVI  131 (370)
T ss_pred             -----hhhh----cCCCceEEEHHHHHHHHHHhh---ccc--EEecCEEEEEe--C-CEEEE--CCCC----EEEeeEEE
Confidence                 0000    001112234567777765544   333  56688999883  3 33444  5544    79999999


Q ss_pred             EccCCCC
Q 024975          160 VCNGHFS  166 (259)
Q Consensus       160 lAtG~~s  166 (259)
                      .|.|..+
T Consensus       132 ~A~G~~s  138 (370)
T TIGR01789       132 DCRGFKP  138 (370)
T ss_pred             ECCCCCC
Confidence            9999653

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.13  E-value=9.1e-11  Score=70.80  Aligned_cols=37  Identities=38%  Similarity=0.625  Sum_probs=34.4

Q ss_pred             EECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            7 VIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         7 IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      |||||++||++|+.|.+.|.+|+|+|+++.+||.+..
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~   37 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARS   37 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCE
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeE
Confidence            8999999999999999999999999999999988865

...

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.12  E-value=3.3e-11  Score=89.29  Aligned_cols=80  Identities=14%  Similarity=0.326  Sum_probs=54.8

Q ss_pred             EEEEEEecCCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCC-----CCCCCCeEEEEccCcCHHHHH
Q 024975          139 WKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIK  213 (259)
Q Consensus       139 ~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~v~viG~G~~a~e~a  213 (259)
                      --+.+++|.    .+.|++|++|||  +.|.+.- ++...   .+....+.+..     ....+|.|.|+|.|-+|+|.+
T Consensus        81 hci~t~~g~----~~ky~kKOG~tg--~kPklq~-E~~n~---~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~  150 (334)
T KOG2755|consen   81 HCIHTQNGE----KLKYFKLCLCTG--YKPKLQV-EGINP---KIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELT  150 (334)
T ss_pred             ceEEecCCc----eeeEEEEEEecC--CCcceee-cCCCc---eEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHH
Confidence            456666665    899999999999  6776532 11111   22222222222     234679999999999999999


Q ss_pred             HHHhcccCeEEEEecCC
Q 024975          214 RDLAGFAKEVHIASRSV  230 (259)
Q Consensus       214 ~~l~~~~~~v~~~~r~~  230 (259)
                      .++...  +|+|....+
T Consensus       151 yElk~~--nv~w~ikd~  165 (334)
T KOG2755|consen  151 YELKIL--NVTWKIKDE  165 (334)
T ss_pred             HHhhcc--eeEEEecch
Confidence            999766  788888877

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.12  E-value=4.9e-10  Score=95.61  Aligned_cols=161  Identities=14%  Similarity=0.066  Sum_probs=83.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCC------------CCCccccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN------------RYPVHSSLYKSL   69 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~   69 (259)
                      .+||+|||+|.+|++||..+. .|.+|+|+||.+..||..................            ...........+
T Consensus         9 e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~~   87 (553)
T PRK07395          9 QFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVRFL   87 (553)
T ss_pred             cCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            479999999999999999996 5999999999887665443322111000000000            000000011111


Q ss_pred             eeccccccceec--CCCCCccC-----CCCCC--CCCC-C---CCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeC
Q 024975           70 RVNLPRELMGFQ--AYPFVARN-----YEGSV--DLRR-Y---PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVE  135 (259)
Q Consensus        70 ~~~~~~~~~~~~--~~~~~~~~-----~~~~~--~~~~-~---~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~  135 (259)
                      ....+.....+.  ..++....     .....  .... +   .....+...|.+.+.+ .+++  ++.++.++++..++
T Consensus        88 ~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~--i~~~~~v~~Li~~~  165 (553)
T PRK07395         88 VEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIE--IISQALALSLWLEP  165 (553)
T ss_pred             HHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcE--EEECcChhhheecC
Confidence            111110000000  01111000     00000  0000 1   1235666777776654 4888  99999999998753


Q ss_pred             --CCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975          136 --SNKWKVKSRKKDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       136 --~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s  166 (259)
                        +....+.... ++....+.++.||+|||.++
T Consensus       166 ~~g~v~Gv~~~~-~g~~~~i~AkaVILATGG~~  197 (553)
T PRK07395        166 ETGRCQGISLLY-QGQITWLRAGAVILATGGGG  197 (553)
T ss_pred             CCCEEEEEEEEE-CCeEEEEEcCEEEEcCCCCc
Confidence              2233344433 33445688999999999754

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.12  E-value=2.9e-09  Score=87.89  Aligned_cols=104  Identities=23%  Similarity=0.300  Sum_probs=84.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +.+++|||||+.|+-.|..+++.|.+|+|+|+.+.+                                            
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i--------------------------------------------  208 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI--------------------------------------------  208 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC--------------------------------------------
Confidence            578999999999999999999999999999998754                                            


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                       .|.. .              +++.+.+...+.+.+++  ++.+++++.++..+ +...+.++++...  .+++|.|++|
T Consensus       209 -Lp~~-D--------------~ei~~~~~~~l~~~gv~--i~~~~~v~~~~~~~-~~v~v~~~~g~~~--~~~ad~vLvA  267 (454)
T COG1249         209 -LPGE-D--------------PEISKELTKQLEKGGVK--ILLNTKVTAVEKKD-DGVLVTLEDGEGG--TIEADAVLVA  267 (454)
T ss_pred             -CCcC-C--------------HHHHHHHHHHHHhCCeE--EEccceEEEEEecC-CeEEEEEecCCCC--EEEeeEEEEc
Confidence             1100 0              88889999998887888  99999999998876 4477888776522  6889999999


Q ss_pred             cCCCCCCccCC
Q 024975          162 NGHFSVPRLAQ  172 (259)
Q Consensus       162 tG~~s~~~~~~  172 (259)
                      +|  ..|+...
T Consensus       268 iG--R~Pn~~~  276 (454)
T COG1249         268 IG--RKPNTDG  276 (454)
T ss_pred             cC--CccCCCC
Confidence            99  6666653

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.12  E-value=4e-09  Score=88.80  Aligned_cols=103  Identities=20%  Similarity=0.241  Sum_probs=79.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+.                                           
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------------------  206 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-------------------------------------------  206 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------------------------------------
Confidence            3689999999999999999999999999999975331                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +.             +  ..++...+.+.+.+.+++  ++.+++|.+++..+ +.+.+...++  ....+.+|.||+|
T Consensus       207 --~~-------------~--~~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~-~~v~v~~~~g--~~~~i~~D~vi~a  264 (461)
T TIGR01350       207 --PG-------------E--DAEVSKVVAKALKKKGVK--ILTNTKVTAVEKND-DQVVYENKGG--ETETLTGEKVLVA  264 (461)
T ss_pred             --CC-------------C--CHHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeC-CEEEEEEeCC--cEEEEEeCEEEEe
Confidence              00             0  056667777888888999  99999999998765 5566655443  2246999999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       265 ~G--~~p~~~  272 (461)
T TIGR01350       265 VG--RKPNTE  272 (461)
T ss_pred             cC--CcccCC
Confidence            99  566554

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.12  E-value=1.3e-09  Score=93.03  Aligned_cols=163  Identities=19%  Similarity=0.151  Sum_probs=85.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC------------CCccccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR------------YPVHSSLYKSL   69 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~   69 (259)
                      .+||+|||+|.+|+++|..+.+. .+|+|+||....+|...................            ..........+
T Consensus         8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~   86 (536)
T PRK09077          8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVRFI   86 (536)
T ss_pred             cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHHHH
Confidence            47999999999999999999887 899999998776654333221111000000000            00000001111


Q ss_pred             eeccccccceec--CCCCCccC---------C-CCCCC---CCCCC---CHHHHHHHHHHHHHHh-CCceeEEeceeEEE
Q 024975           70 RVNLPRELMGFQ--AYPFVARN---------Y-EGSVD---LRRYP---GHEEVLRYLQNFAREF-GVDQVVRLHTEVLN  130 (259)
Q Consensus        70 ~~~~~~~~~~~~--~~~~~~~~---------~-~~~~~---~~~~~---~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~  130 (259)
                      ....+.....+.  ..+|....         . .....   ...++   .+..+...|.+.+.+. +++  ++.++.+++
T Consensus        87 ~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~--v~~~~~v~~  164 (536)
T PRK09077         87 AENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNIT--VLERHNAID  164 (536)
T ss_pred             HHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcE--EEeeEEeee
Confidence            111111000000  11111100         0 00000   00111   2346667677666554 788  999999999


Q ss_pred             EEEeC------CCcEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975          131 ARLVE------SNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       131 i~~~~------~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      +...+      +....+...+ .+++...+.++.||+|||.++.
T Consensus       165 Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~  208 (536)
T PRK09077        165 LITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASK  208 (536)
T ss_pred             eeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCC
Confidence            87643      2334455543 3355567899999999998654

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.12  E-value=1.3e-09  Score=94.23  Aligned_cols=63  Identities=19%  Similarity=0.036  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeC--CCcEEEEEEec-CCceEEEEeCEEEEccCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ..+...+...+.+.|++  ++.+++|+++...+  +..+.|.+.+. +++...+.+|.||+|+|.|+.
T Consensus       232 ~rl~~al~~~A~~~Ga~--i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~  297 (627)
T PLN02464        232 SRLNVALACTAALAGAA--VLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD  297 (627)
T ss_pred             HHHHHHHHHHHHhCCcE--EEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence            67777788888888998  99999999998763  23455565432 233346899999999998864

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.11  E-value=1.3e-09  Score=93.84  Aligned_cols=43  Identities=37%  Similarity=0.482  Sum_probs=38.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~   44 (259)
                      .+||+|||+|++|+++|..+.+.|.+|+|+||.+..||.+...
T Consensus        12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~   54 (581)
T PRK06134         12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWS   54 (581)
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccccc
Confidence            5799999999999999999999999999999998888765543

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.11  E-value=9.2e-10  Score=84.32  Aligned_cols=159  Identities=21%  Similarity=0.256  Sum_probs=95.4

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCC-----CC--CCCCCCCCCcc------------cc
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES-----DP--LGVDPNRYPVH------------SS   64 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~-----~~--~~~~~~~~~~~------------~~   64 (259)
                      .++|||+|.+||+++..+...+-.|+++|+...+||.........+     .+  +.....+.++.            ..
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e   90 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE   90 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence            5899999999999999999987779999999999988766543321     00  11111110000            01


Q ss_pred             ccccceeccccccceecC-C-------------CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCceeEEe
Q 024975           65 LYKSLRVNLPRELMGFQA-Y-------------PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF------GVDQVVRL  124 (259)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~v~~  124 (259)
                      +.+.+..+++.....+.. +             ..+..   . ......|+..++.+.|....+++      -+.  +..
T Consensus        91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRT---H-r~s~plppgfei~~~L~~~l~k~as~~pe~~k--i~~  164 (477)
T KOG2404|consen   91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRT---H-RSSGPLPPGFEIVKALSTRLKKKASENPELVK--ILL  164 (477)
T ss_pred             HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcc---c-ccCCCCCCchHHHHHHHHHHHHhhhcChHHHh--hhh
Confidence            111222222111100000 0             11111   0 12233445566666665555443      233  778


Q ss_pred             ceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975          125 HTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       125 ~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      +++|++|..+++....|...+..++...+.++.||+|||.++..
T Consensus       165 nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ys  208 (477)
T KOG2404|consen  165 NSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYS  208 (477)
T ss_pred             cceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCcC
Confidence            99999999877566778877766777789999999999987764

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.11  E-value=7.4e-10  Score=96.23  Aligned_cols=63  Identities=16%  Similarity=0.136  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ..+...|.+.+.+.+++  ++.++.++++..+++....+...+ .++....+.++.||+|||.++.
T Consensus       158 ~~l~~~L~~~~~~~gv~--i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~  221 (657)
T PRK08626        158 HTMLYAVDNEAIKLGVP--VHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGR  221 (657)
T ss_pred             HHHHHHHHHHHHhCCCE--EEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence            44556677777778998  999999999987653334455443 2355567889999999997654

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.10  E-value=2.1e-09  Score=90.40  Aligned_cols=65  Identities=17%  Similarity=0.278  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHhC-CceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEccCCCCCCc
Q 024975          103 EEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s~~~  169 (259)
                      ..+.+.|.+.+++.+ ++  ++++++|++++..+++.|.+.+.+. ++....+.+++||+|+|.|+...
T Consensus       183 ~~l~~aL~~~a~~~Ggv~--i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L  249 (494)
T PRK05257        183 GALTRQLVGYLQKQGNFE--LQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPL  249 (494)
T ss_pred             HHHHHHHHHHHHhCCCeE--EEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHH
Confidence            467777777777766 78  9999999999986545688877541 12223589999999999877543

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.10  E-value=1.4e-09  Score=93.51  Aligned_cols=41  Identities=29%  Similarity=0.426  Sum_probs=37.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~   42 (259)
                      .+||+|||+|.+|+++|+.+++.|.+|+|+||.+..||...
T Consensus        11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t~   51 (584)
T PRK12835         11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTA   51 (584)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchHH
Confidence            47999999999999999999999999999999988776543

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.10  E-value=1.3e-09  Score=93.87  Aligned_cols=34  Identities=26%  Similarity=0.359  Sum_probs=31.4

Q ss_pred             EEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC
Q 024975            5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG   38 (259)
Q Consensus         5 v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g   38 (259)
                      |+|||+|++|++||..+++.|.+|+|+||.+.++
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~   34 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR   34 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence            6999999999999999999999999999987554

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.10  E-value=2.7e-09  Score=91.42  Aligned_cols=43  Identities=37%  Similarity=0.492  Sum_probs=38.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~   44 (259)
                      .+||+|||+|++|+++|..+++.|.+|+|+||.+.+||.+...
T Consensus         7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~~   49 (557)
T PRK07843          7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARS   49 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccccc
Confidence            4799999999999999999999999999999998887655443

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.09  E-value=6.3e-09  Score=87.77  Aligned_cols=104  Identities=22%  Similarity=0.278  Sum_probs=77.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+.                                           
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------------------------------  216 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------------------------------  216 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------------------------------
Confidence            3689999999999999999999999999999975330                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEE-EEEEecCCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~-v~~~~g~~~~~~~~ad~VIl  160 (259)
                        +.             +.  .++...+.+.+.+.|++  ++.+++|+++....++... +...++  ....+.+|.||+
T Consensus       217 --~~-------------~~--~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~~~~~~~~~~~~g--~~~~i~~D~vi~  275 (472)
T PRK05976        217 --PT-------------ED--AELSKEVARLLKKLGVR--VVTGAKVLGLTLKKDGGVLIVAEHNG--EEKTLEADKVLV  275 (472)
T ss_pred             --Cc-------------CC--HHHHHHHHHHHHhcCCE--EEeCcEEEEEEEecCCCEEEEEEeCC--ceEEEEeCEEEE
Confidence              00             00  56667777788888999  9999999999752113333 333332  234699999999


Q ss_pred             ccCCCCCCccC
Q 024975          161 CNGHFSVPRLA  171 (259)
Q Consensus       161 AtG~~s~~~~~  171 (259)
                      |+|  ..|+.+
T Consensus       276 a~G--~~p~~~  284 (472)
T PRK05976        276 SVG--RRPNTE  284 (472)
T ss_pred             eeC--CccCCC
Confidence            999  566554

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.09  E-value=9.6e-10  Score=91.19  Aligned_cols=101  Identities=23%  Similarity=0.176  Sum_probs=70.2

Q ss_pred             HHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCC
Q 024975          114 REFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN  193 (259)
Q Consensus       114 ~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~  193 (259)
                      .+.+++  ++..++|+++....   -.+.+.++     .+.+|++++|||  +.+..+.    .................
T Consensus        64 ~~~~i~--~~~~~~v~~id~~~---~~v~~~~g-----~~~yd~LvlatG--a~~~~~~----~~~~~~~~~~~~~~~~~  127 (415)
T COG0446          64 RATGID--VRTGTEVTSIDPEN---KVVLLDDG-----EIEYDYLVLATG--ARPRPPP----ISDWEGVVTLRLREDAE  127 (415)
T ss_pred             HhhCCE--EeeCCEEEEecCCC---CEEEECCC-----cccccEEEEcCC--CcccCCC----ccccCceEEECCHHHHH
Confidence            455777  88889999988653   45566554     689999999999  6666655    11111111111111110


Q ss_pred             -----CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          194 -----PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       194 -----~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                           ....++++|+|+|..|+++|..+.+.|.+|+++...+
T Consensus       128 ~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~  169 (415)
T COG0446         128 ALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD  169 (415)
T ss_pred             HHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc
Confidence                 0114789999999999999999999999999999999

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=99.08  E-value=2.5e-09  Score=86.38  Aligned_cols=65  Identities=23%  Similarity=0.358  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEEccCCCCCCcc
Q 024975          104 EVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNGHFSVPRL  170 (259)
Q Consensus       104 ~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIlAtG~~s~~~~  170 (259)
                      .+.+.+.+.+.+. +.+  ++++++|++|++.+++.|.|.+.+-. ++...+.+++|++..|+++.+..
T Consensus       182 ~LTr~l~~~l~~~~~~~--~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LL  248 (488)
T PF06039_consen  182 ALTRQLVEYLQKQKGFE--LHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLL  248 (488)
T ss_pred             HHHHHHHHHHHhCCCcE--EEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHH
Confidence            4445555555554 888  99999999999998677999987643 55678999999999998776653

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.08  E-value=3e-09  Score=90.40  Aligned_cols=41  Identities=32%  Similarity=0.476  Sum_probs=36.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      .+||+|||+| +|+++|+++++.|.+|+|+||.+..||....
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~   47 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAY   47 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceec
Confidence            4799999999 9999999999999999999999877766544

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.07  E-value=4.2e-09  Score=87.25  Aligned_cols=58  Identities=19%  Similarity=0.049  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCc-EEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ..+...+.+.+.+.|++  ++.+++|+++...+++. +.|.+.++     .+.++.||+|+|.++.
T Consensus       183 ~~l~~~l~~~a~~~Gv~--~~~~~~V~~i~~~~~~~~~~v~t~~g-----~i~a~~vVvaagg~~~  241 (407)
T TIGR01373       183 DAVAWGYARGADRRGVD--IIQNCEVTGFIRRDGGRVIGVETTRG-----FIGAKKVGVAVAGHSS  241 (407)
T ss_pred             HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCcEEEEEeCCc-----eEECCEEEECCChhhH
Confidence            45666677778888998  99999999998653233 44666553     5899999999987653

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.06  E-value=8e-09  Score=86.79  Aligned_cols=41  Identities=29%  Similarity=0.477  Sum_probs=37.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc----CCcEEEEeeCCCcCceee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~----g~~v~v~e~~~~~gg~~~   42 (259)
                      ..+++|||||++||++|.+|.+.    |.+|+|+|+.+.+||.+.
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~   66 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD   66 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence            36899999999999999999995    679999999999998864

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.05  E-value=3.5e-09  Score=87.27  Aligned_cols=98  Identities=24%  Similarity=0.301  Sum_probs=77.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+.+|..|.+.|.+|+|+|+.+.+....                                         
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------------  183 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN-----------------------------------------  183 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh-----------------------------------------
Confidence            579999999999999999999999999999976431110                                         


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                                      ++  ..+..++.+.+.+.+++  ++++++|+++.. + +.+.+.+.++.    .+.+|.||+|+
T Consensus       184 ----------------~~--~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~-~-~~~~v~l~~g~----~i~aD~Vv~a~  237 (396)
T PRK09754        184 ----------------AP--PPVQRYLLQRHQQAGVR--ILLNNAIEHVVD-G-EKVELTLQSGE----TLQADVVIYGI  237 (396)
T ss_pred             ----------------cC--HHHHHHHHHHHHHCCCE--EEeCCeeEEEEc-C-CEEEEEECCCC----EEECCEEEECC
Confidence                            00  56667778888888999  999999999875 2 45666676654    79999999999


Q ss_pred             CCCCCCc
Q 024975          163 GHFSVPR  169 (259)
Q Consensus       163 G~~s~~~  169 (259)
                      |  ..|+
T Consensus       238 G--~~pn  242 (396)
T PRK09754        238 G--ISAN  242 (396)
T ss_pred             C--CChh
Confidence            9  4554

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.05  E-value=6e-09  Score=87.70  Aligned_cols=104  Identities=17%  Similarity=0.217  Sum_probs=80.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                           
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------------------  208 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-------------------------------------------  208 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------------------------------------------
Confidence            3689999999999999999999999999999975431                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +.             +.  .++...+.+.+.+.+++  ++.+++|++++..+ +.+.+.+.++ +....+.+|.||+|
T Consensus       209 --~~-------------~~--~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~v~v~~~~g-g~~~~i~~D~vi~a  267 (462)
T PRK06416        209 --PG-------------ED--KEISKLAERALKKRGIK--IKTGAKAKKVEQTD-DGVTVTLEDG-GKEETLEADYVLVA  267 (462)
T ss_pred             --Cc-------------CC--HHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeC-CEEEEEEEeC-CeeEEEEeCEEEEe
Confidence              00             00  56677778888888999  99999999998765 5566666554 22347899999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       268 ~G--~~p~~~  275 (462)
T PRK06416        268 VG--RRPNTE  275 (462)
T ss_pred             eC--CccCCC
Confidence            99  555543

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.04  E-value=8.2e-09  Score=87.07  Aligned_cols=105  Identities=24%  Similarity=0.273  Sum_probs=81.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                           
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------------------  219 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-------------------------------------------  219 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-------------------------------------------
Confidence            3689999999999999999999999999999975331                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +.             +  ..++...+.+.+.+.+++  ++.+++|++++..+ +...+.+.++++....+.+|.|++|
T Consensus       220 --~~-------------~--d~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~-~~v~v~~~~~~g~~~~i~~D~vl~a  279 (475)
T PRK06327        220 --AA-------------A--DEQVAKEAAKAFTKQGLD--IHLGVKIGEIKTGG-KGVSVAYTDADGEAQTLEVDKLIVS  279 (475)
T ss_pred             --Cc-------------C--CHHHHHHHHHHHHHcCcE--EEeCcEEEEEEEcC-CEEEEEEEeCCCceeEEEcCEEEEc
Confidence              00             0  056667777777788999  99999999998765 4566666554444457999999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       280 ~G--~~p~~~  287 (475)
T PRK06327        280 IG--RVPNTD  287 (475)
T ss_pred             cC--CccCCC
Confidence            99  566654

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.04  E-value=1.8e-09  Score=91.59  Aligned_cols=61  Identities=16%  Similarity=0.064  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975          103 EEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       103 ~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      ..+...|.+.+.+. +++  ++.++.++++..+++....+...+. +....+.++.||+|||.++
T Consensus       136 ~~l~~~L~~~~~~~~gV~--i~~~~~v~~Li~~~g~v~Gv~~~~~-~~~~~i~Ak~VVLATGG~~  197 (513)
T PRK07512        136 AAIMRALIAAVRATPSIT--VLEGAEARRLLVDDGAVAGVLAATA-GGPVVLPARAVVLATGGIG  197 (513)
T ss_pred             HHHHHHHHHHHHhCCCCE--EEECcChhheeecCCEEEEEEEEeC-CeEEEEECCEEEEcCCCCc
Confidence            56777777777654 788  9999999998765423344555432 2234689999999999865

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.03  E-value=3.7e-09  Score=90.98  Aligned_cols=43  Identities=37%  Similarity=0.414  Sum_probs=38.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~   44 (259)
                      .+||+|||+|++|+++|..+.+.|.+|+|+||.+.+||.+...
T Consensus        16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s   58 (578)
T PRK12843         16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATS   58 (578)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccccc
Confidence            4799999999999999999999999999999998888776544

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.03  E-value=1.1e-08  Score=86.10  Aligned_cols=105  Identities=26%  Similarity=0.273  Sum_probs=79.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +.+++|||+|+.|+.+|..|++.|.+|+|+|+.+.+.                                           
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------------------  208 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------------------------------  208 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------------------
Confidence            3689999999999999999999999999999865331                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +.             +  ..++...+.+.+.+.+++  ++.+++|+++.... +.+.+.+...++....+.+|.||+|
T Consensus       209 --~~-------------~--d~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~~~g~~~~i~~D~vi~a  268 (466)
T PRK07818        209 --PN-------------E--DAEVSKEIAKQYKKLGVK--ILTGTKVESIDDNG-SKVTVTVSKKDGKAQELEADKVLQA  268 (466)
T ss_pred             --Cc-------------c--CHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeC-CeEEEEEEecCCCeEEEEeCEEEEC
Confidence              00             0  056667788888888999  99999999998654 4555555422233347999999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       269 ~G--~~pn~~  276 (466)
T PRK07818        269 IG--FAPRVE  276 (466)
T ss_pred             cC--cccCCC
Confidence            99  566543

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.03  E-value=6.6e-09  Score=86.84  Aligned_cols=100  Identities=19%  Similarity=0.272  Sum_probs=76.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-----------------------------------------  195 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-----------------------------------------  195 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-----------------------------------------
Confidence            468999999999999999999999999999997543100                                         


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                                       +  ..++...+.+.+++.+++  ++.+++|++++..+ +.+.+.. ++    ..+.+|.||+|
T Consensus       196 -----------------~--~~~~~~~~~~~l~~~GI~--i~~~~~V~~i~~~~-~~v~v~~-~g----~~i~~D~viva  248 (438)
T PRK07251        196 -----------------E--EPSVAALAKQYMEEDGIT--FLLNAHTTEVKNDG-DQVLVVT-ED----ETYRFDALLYA  248 (438)
T ss_pred             -----------------C--CHHHHHHHHHHHHHcCCE--EEcCCEEEEEEecC-CEEEEEE-CC----eEEEcCEEEEe
Confidence                             0  055666777778888999  99999999998654 4444443 22    37999999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       249 ~G--~~p~~~  256 (438)
T PRK07251        249 TG--RKPNTE  256 (438)
T ss_pred             eC--CCCCcc
Confidence            99  566543

>PRK06116 glutathione reductase; Validated

Probab=99.03  E-value=7.8e-09  Score=86.72  Aligned_cols=102  Identities=15%  Similarity=0.185  Sum_probs=79.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+-+|..|.+.|.+|+++++.+.+..                                          
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  204 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR------------------------------------------  204 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc------------------------------------------
Confidence            36899999999999999999999999999998753210                                          


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                                      .+.  .++...+.+.+++.+++  ++.+++|.+++..+++.+.+.+.++.    .+.+|.||+|
T Consensus       205 ----------------~~~--~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~~g~~~v~~~~g~----~i~~D~Vv~a  260 (450)
T PRK06116        205 ----------------GFD--PDIRETLVEEMEKKGIR--LHTNAVPKAVEKNADGSLTLTLEDGE----TLTVDCLIWA  260 (450)
T ss_pred             ----------------ccC--HHHHHHHHHHHHHCCcE--EECCCEEEEEEEcCCceEEEEEcCCc----EEEeCEEEEe
Confidence                            000  56667777888888999  99999999998765333667666543    7899999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       261 ~G--~~p~~~  268 (450)
T PRK06116        261 IG--REPNTD  268 (450)
T ss_pred             eC--CCcCCC
Confidence            99  556544

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.03  E-value=7.7e-09  Score=87.05  Aligned_cols=100  Identities=20%  Similarity=0.254  Sum_probs=79.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++++|||+|+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------  212 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS------------------------------------------  212 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC------------------------------------------
Confidence            36899999999999999999999999999999764310                                          


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                         .             +  ..++...+.+.+.+.+++  ++.+++|+++...+ +.+.+.+.++.    .+.+|.||+|
T Consensus       213 ---~-------------~--d~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~D~vi~a  267 (461)
T PRK05249        213 ---F-------------L--DDEISDALSYHLRDSGVT--IRHNEEVEKVEGGD-DGVIVHLKSGK----KIKADCLLYA  267 (461)
T ss_pred             ---c-------------C--CHHHHHHHHHHHHHcCCE--EEECCEEEEEEEeC-CeEEEEECCCC----EEEeCEEEEe
Confidence               0             0  066777788888888999  99999999998765 55666665543    6999999999


Q ss_pred             cCCCCCCcc
Q 024975          162 NGHFSVPRL  170 (259)
Q Consensus       162 tG~~s~~~~  170 (259)
                      +|  ..|+.
T Consensus       268 ~G--~~p~~  274 (461)
T PRK05249        268 NG--RTGNT  274 (461)
T ss_pred             ec--CCccc
Confidence            99  55554

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.01  E-value=4.7e-10  Score=99.35  Aligned_cols=138  Identities=20%  Similarity=0.171  Sum_probs=78.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCc---CceeeeCCCCCCCCCCCCCCCCCccccccccceec-cccc
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQV---GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN-LPRE   76 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   76 (259)
                      .+|+||||||+|+++|..|.+.  |++|+|+|+++..   |......++........       .......+... ....
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~-------~~~~~~~~~~~~~~~~   73 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAA-------DPVSAAAIGDAFNHWD   73 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhc-------CHHHHHHHHHhcccCC
Confidence            3899999999999999999998  8999999998753   43333222110000000       00000000000 0000


Q ss_pred             cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (259)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad  156 (259)
                      ...+.. .....  ........-..+.++.+.|.+.+.+.+++  ++++++|+++..                 ....+|
T Consensus        74 ~~~~~~-~g~~~--~~~g~~~~~i~R~~L~~~L~e~a~~~GV~--i~~g~~v~~i~~-----------------~~~~~D  131 (765)
T PRK08255         74 DIDVHF-KGRRI--RSGGHGFAGIGRKRLLNILQARCEELGVK--LVFETEVPDDQA-----------------LAADAD  131 (765)
T ss_pred             ceEEEE-CCEEE--EECCeeEecCCHHHHHHHHHHHHHHcCCE--EEeCCccCchhh-----------------hhcCCC
Confidence            000000 00000  00011111256799999999999999998  999988776531                 024789


Q ss_pred             EEEEccCCCCCCc
Q 024975          157 AVVVCNGHFSVPR  169 (259)
Q Consensus       157 ~VIlAtG~~s~~~  169 (259)
                      .||.|+|.+|..+
T Consensus       132 ~VVgADG~~S~vR  144 (765)
T PRK08255        132 LVIASDGLNSRIR  144 (765)
T ss_pred             EEEEcCCCCHHHH
Confidence            9999999877553

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.01  E-value=1.1e-08  Score=85.92  Aligned_cols=102  Identities=19%  Similarity=0.228  Sum_probs=76.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                           
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-------------------------------------------  206 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-------------------------------------------  206 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------------------
Confidence            3679999999999999999999999999999975331                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +.             +  ..++.+.+.+.+.+.+++  ++.+++|++++... ..+.+.. +  +....+.+|.||+|
T Consensus       207 --~~-------------~--d~e~~~~l~~~L~~~GI~--i~~~~~V~~i~~~~-~~v~~~~-~--g~~~~i~~D~vivA  263 (458)
T PRK06912        207 --PG-------------E--DEDIAHILREKLENDGVK--IFTGAALKGLNSYK-KQALFEY-E--GSIQEVNAEFVLVS  263 (458)
T ss_pred             --cc-------------c--cHHHHHHHHHHHHHCCCE--EEECCEEEEEEEcC-CEEEEEE-C--CceEEEEeCEEEEe
Confidence              00             0  056677778888888999  99999999997654 3343332 2  22246899999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       264 ~G--~~p~~~  271 (458)
T PRK06912        264 VG--RKPRVQ  271 (458)
T ss_pred             cC--CccCCC
Confidence            99  566653

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=99.00  E-value=7.5e-09  Score=88.99  Aligned_cols=64  Identities=13%  Similarity=-0.018  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeC---CCcEEEEEEe-cCCceEEEEeCEEEEccCCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE---SNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~---~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+...+...+.+.+++  +..++.++++..++   +..+.+...+ .+++...+.++.||+|||.++..
T Consensus       126 ~~~~r~l~~~l~~~~~~--i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l  193 (614)
T TIGR02061       126 ESYKPIVAEAAKNALGD--IFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNV  193 (614)
T ss_pred             hhHHHHHHHHHHhCCCe--EEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccccc
Confidence            34444555555555566  89999999998754   2344555432 23555678999999999987643

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR02053 MerA mercuric reductase

Probab=98.99  E-value=1.6e-08  Score=85.18  Aligned_cols=103  Identities=21%  Similarity=0.303  Sum_probs=78.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                            
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------------------  202 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL--------------------------------------------  202 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC--------------------------------------------
Confidence            689999999999999999999999999999975431                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                       +.             +  ..++...+.+.+.+.+++  ++.+++|+++...+ +.+.+.+...+ ....+.+|.||+|+
T Consensus       203 -~~-------------~--d~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~~~v~~~~~~-~~~~i~~D~ViiA~  262 (463)
T TIGR02053       203 -PR-------------E--EPEISAAVEEALAEEGIE--VVTSAQVKAVSVRG-GGKIITVEKPG-GQGEVEADELLVAT  262 (463)
T ss_pred             -Cc-------------c--CHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEcC-CEEEEEEEeCC-CceEEEeCEEEEeE
Confidence             00             0  055667777888888999  99999999998754 45566654311 12479999999999


Q ss_pred             CCCCCCccC
Q 024975          163 GHFSVPRLA  171 (259)
Q Consensus       163 G~~s~~~~~  171 (259)
                      |  ..|+..
T Consensus       263 G--~~p~~~  269 (463)
T TIGR02053       263 G--RRPNTD  269 (463)
T ss_pred             C--CCcCCC
Confidence            9  566554

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.99  E-value=3.9e-09  Score=83.67  Aligned_cols=155  Identities=19%  Similarity=0.207  Sum_probs=86.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHc------CCcEEEEeeCCCcCceeeeCCCCC-CCCCCCCCCCCCccccccccceecccc
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE------GHTVVVYEKGEQVGGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNLPR   75 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~------g~~v~v~e~~~~~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (259)
                      +||+||||||+||++|.+|.+.      .++|.|+||...+||......... ...-.+.|......+    .+......
T Consensus        77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~a----pl~t~vT~  152 (621)
T KOG2415|consen   77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGA----PLNTPVTS  152 (621)
T ss_pred             ccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCC----cccccccc
Confidence            7999999999999999999884      468999999999987654321111 000001111100011    11111111


Q ss_pred             ccceecC----CCCCccCCCCCCCCCCCC-CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcE-EEEEEec---
Q 024975           76 ELMGFQA----YPFVARNYEGSVDLRRYP-GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKK---  146 (259)
Q Consensus        76 ~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~g---  146 (259)
                      +.+.|..    ++....  .......+|. +-.++.++|-+.+++.|++  +.-+..+..+-.++++.+ .+.+++-   
T Consensus       153 d~~~fLt~~~~i~vPv~--~pm~NhGNYvv~L~~~v~wLg~kAEe~GvE--iyPg~aaSevly~edgsVkGiaT~D~GI~  228 (621)
T KOG2415|consen  153 DKFKFLTGKGRISVPVP--SPMDNHGNYVVSLGQLVRWLGEKAEELGVE--IYPGFAASEVLYDEDGSVKGIATNDVGIS  228 (621)
T ss_pred             cceeeeccCceeecCCC--cccccCCcEEEEHHHHHHHHHHHHHhhCce--eccccchhheeEcCCCcEeeEeecccccc
Confidence            1111111    111100  0011222443 3378889999999999999  877777777777665433 2444321   


Q ss_pred             ---C-----CceEEEEeCEEEEccCCC
Q 024975          147 ---D-----DVVEEETFDAVVVCNGHF  165 (259)
Q Consensus       147 ---~-----~~~~~~~ad~VIlAtG~~  165 (259)
                         .     .+.-.+.++..|+|-|..
T Consensus       229 k~G~pKd~FerGme~hak~TifAEGc~  255 (621)
T KOG2415|consen  229 KDGAPKDTFERGMEFHAKVTIFAEGCH  255 (621)
T ss_pred             CCCCccccccccceecceeEEEecccc
Confidence               0     111257899999998853

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.99  E-value=1.8e-09  Score=84.66  Aligned_cols=155  Identities=21%  Similarity=0.252  Sum_probs=84.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC-----------cCceeeeCCCCCCCCCCCCCCCCCccccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ-----------VGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLR   70 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~-----------~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (259)
                      .+||+|||||.+|.++|+.|.+.|.+|+|+||+-.           +||.....      .++......-+.+.....+.
T Consensus        45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~------~LGl~Dcve~IDAQ~v~Gy~  118 (509)
T KOG1298|consen   45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALS------KLGLEDCVEGIDAQRVTGYA  118 (509)
T ss_pred             cccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHH------HhCHHHHhhcccceEeeeeE
Confidence            37999999999999999999999999999999721           12211110      00110000000000000000


Q ss_pred             eccccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           71 VNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                      .....   ...+.|+.............|-. -.|.+.|++.+... +++   ..+.+|.++-.+++-...|+.++..++
T Consensus       119 ifk~g---k~v~~pyP~~~f~~d~~GrsFhn-GRFvq~lR~ka~slpNV~---~eeGtV~sLlee~gvvkGV~yk~k~ge  191 (509)
T KOG1298|consen  119 IFKDG---KEVDLPYPLKNFPSDPSGRSFHN-GRFVQRLRKKAASLPNVR---LEEGTVKSLLEEEGVVKGVTYKNKEGE  191 (509)
T ss_pred             EEeCC---ceeeccCCCcCCCCCcccceeec-cHHHHHHHHHHhcCCCeE---EeeeeHHHHHhccCeEEeEEEecCCCc
Confidence            00000   00111222111111111223322 45667777766554 443   556678887766533345777776677


Q ss_pred             eEEEEeCEEEEccCCCCCCc
Q 024975          150 VEEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~~~  169 (259)
                      ..+..|...|+|.|.+|.-+
T Consensus       192 e~~~~ApLTvVCDGcfSnlR  211 (509)
T KOG1298|consen  192 EVEAFAPLTVVCDGCFSNLR  211 (509)
T ss_pred             eEEEecceEEEecchhHHHH
Confidence            78889999999999877544

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.98  E-value=1.5e-08  Score=85.24  Aligned_cols=104  Identities=27%  Similarity=0.347  Sum_probs=78.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +.+++|||+|+.|+.+|..|.+.|.+|+|+|+.+.+.                                           
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-------------------------------------------  210 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-------------------------------------------  210 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------------------------------
Confidence            3689999999999999999999999999999976431                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +.             +.  .++...+.+.+.+. ++  ++.+++|+.++..+ +...+.+.++++....+.+|.||+|
T Consensus       211 --~~-------------~d--~~~~~~~~~~l~~~-v~--i~~~~~v~~i~~~~-~~~~v~~~~~~~~~~~i~~D~vi~a  269 (471)
T PRK06467        211 --PA-------------AD--KDIVKVFTKRIKKQ-FN--IMLETKVTAVEAKE-DGIYVTMEGKKAPAEPQRYDAVLVA  269 (471)
T ss_pred             --Cc-------------CC--HHHHHHHHHHHhhc-eE--EEcCCEEEEEEEcC-CEEEEEEEeCCCcceEEEeCEEEEe
Confidence              00             00  56666777777666 77  89999999998765 5566665543332356999999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       270 ~G--~~pn~~  277 (471)
T PRK06467        270 VG--RVPNGK  277 (471)
T ss_pred             ec--ccccCC
Confidence            99  566554

>PTZ00367 squalene epoxidase; Provisional

Probab=98.98  E-value=1.4e-09  Score=92.59  Aligned_cols=34  Identities=26%  Similarity=0.458  Sum_probs=32.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++||+|||||++|+++|..|++.|++|+|+|+..
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            4799999999999999999999999999999975

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.98  E-value=1.6e-08  Score=84.69  Aligned_cols=103  Identities=15%  Similarity=0.184  Sum_probs=79.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +.+++|||+|+.|+-+|..|.+.|.+|+++++.+.+...                                         
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-----------------------------------------  204 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-----------------------------------------  204 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-----------------------------------------
Confidence            368999999999999999999999999999997643100                                         


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                                       +.  .++...+.+.+.+.+++  ++.+++|+++....++...+.++++.   ..+.+|.||+|
T Consensus       205 -----------------~d--~~~~~~~~~~l~~~gI~--i~~~~~v~~i~~~~~~~~~v~~~~g~---~~i~~D~vi~a  260 (450)
T TIGR01421       205 -----------------FD--SMISETITEEYEKEGIN--VHKLSKPVKVEKTVEGKLVIHFEDGK---SIDDVDELIWA  260 (450)
T ss_pred             -----------------cC--HHHHHHHHHHHHHcCCE--EEcCCEEEEEEEeCCceEEEEECCCc---EEEEcCEEEEe
Confidence                             00  56777788888888999  99999999998654233556665542   46899999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       261 ~G--~~pn~~  268 (450)
T TIGR01421       261 IG--RKPNTK  268 (450)
T ss_pred             eC--CCcCcc
Confidence            99  566543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06370 mercuric reductase; Validated

Probab=98.97  E-value=2.3e-08  Score=84.15  Aligned_cols=104  Identities=26%  Similarity=0.325  Sum_probs=78.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+...                                         
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-----------------------------------------  209 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-----------------------------------------  209 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-----------------------------------------
Confidence            368999999999999999999999999999997643100                                         


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                                       +  ..++...+.+.+.+.+++  ++++++|.+++..+ +...+.+...+ ....+.+|.||+|
T Consensus       210 -----------------~--~~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~-~~~~v~~~~~~-~~~~i~~D~Vi~A  266 (463)
T PRK06370        210 -----------------E--DEDVAAAVREILEREGID--VRLNAECIRVERDG-DGIAVGLDCNG-GAPEITGSHILVA  266 (463)
T ss_pred             -----------------c--CHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEEEeCC-CceEEEeCEEEEC
Confidence                             0  055667777888888999  99999999998764 44555544211 1246899999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       267 ~G--~~pn~~  274 (463)
T PRK06370        267 VG--RVPNTD  274 (463)
T ss_pred             cC--CCcCCC
Confidence            99  566644

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.97  E-value=7.4e-09  Score=86.37  Aligned_cols=61  Identities=16%  Similarity=0.127  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEE--EEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK--VKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~--v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ...+...|.+.+++.+++  ++++++|+++..++++.+.  +...++.   ..+.++.||+|||.++.
T Consensus       122 g~~l~~~L~~~a~~~Gv~--i~~~~~v~~l~~~~~~g~v~gv~~~~~~---~~i~ak~VIlAtGG~~~  184 (432)
T TIGR02485       122 GKALTNALYSSAERLGVE--IRYGIAVDRIPPEAFDGAHDGPLTTVGT---HRITTQALVLAAGGLGA  184 (432)
T ss_pred             HHHHHHHHHHHHHHcCCE--EEeCCEEEEEEecCCCCeEEEEEEcCCc---EEEEcCEEEEcCCCccc
Confidence            456788888888889999  9999999999876312233  3332221   47889999999997554

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.97  E-value=1.8e-08  Score=84.36  Aligned_cols=99  Identities=16%  Similarity=0.260  Sum_probs=77.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+.+|..|.+.|.+|+++++.+.+...                                          
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------------------------------  204 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG------------------------------------------  204 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc------------------------------------------
Confidence            57999999999999999999999999999987532000                                          


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                                      +.  .++...+.+.+.+.+++  ++.+++|.++...+ +.+.+.+.++.    .+.+|.||+|+
T Consensus       205 ----------------~d--~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~D~viva~  259 (446)
T TIGR01424       205 ----------------FD--DDMRALLARNMEGRGIR--IHPQTSLTSITKTD-DGLKVTLSHGE----EIVADVVLFAT  259 (446)
T ss_pred             ----------------cC--HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcC-CeEEEEEcCCc----EeecCEEEEee
Confidence                            00  56667777778888999  99999999998754 44666665543    79999999999


Q ss_pred             CCCCCCcc
Q 024975          163 GHFSVPRL  170 (259)
Q Consensus       163 G~~s~~~~  170 (259)
                      |  ..|+.
T Consensus       260 G--~~pn~  265 (446)
T TIGR01424       260 G--RSPNT  265 (446)
T ss_pred             C--CCcCC
Confidence            9  55554

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.97  E-value=2.6e-08  Score=83.80  Aligned_cols=104  Identities=27%  Similarity=0.302  Sum_probs=78.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+.                                           
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------------------------------  210 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------------------------------  210 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------------------------------
Confidence            4689999999999999999999999999999865431                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIl  160 (259)
                        +.             +.  .++...+.+.+.+.+++  ++.+++|+++...+ +.+.+.+... ++....+.+|.|++
T Consensus       211 --~~-------------~d--~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~v~v~~~~~~~g~~~~i~~D~vi~  270 (466)
T PRK06115        211 --PG-------------TD--TETAKTLQKALTKQGMK--FKLGSKVTGATAGA-DGVSLTLEPAAGGAAETLQADYVLV  270 (466)
T ss_pred             --CC-------------CC--HHHHHHHHHHHHhcCCE--EEECcEEEEEEEcC-CeEEEEEEEcCCCceeEEEeCEEEE
Confidence              00             00  55667777888888999  99999999998654 4555555421 12235799999999


Q ss_pred             ccCCCCCCcc
Q 024975          161 CNGHFSVPRL  170 (259)
Q Consensus       161 AtG~~s~~~~  170 (259)
                      |+|  ..|+.
T Consensus       271 a~G--~~pn~  278 (466)
T PRK06115        271 AIG--RRPYT  278 (466)
T ss_pred             ccC--Ccccc
Confidence            999  55554

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.96  E-value=1.9e-08  Score=83.99  Aligned_cols=57  Identities=21%  Similarity=0.237  Sum_probs=41.8

Q ss_pred             CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEE--EEEEecCCceEEEEeCEEEEccCC
Q 024975          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK--VKSRKKDDVVEEETFDAVVVCNGH  164 (259)
Q Consensus       100 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~--v~~~~g~~~~~~~~ad~VIlAtG~  164 (259)
                      ..+.+|.++|.+.+.+.|++  ++.+ +|+++...+ +++.  |.++++    .++++|+||.|||.
T Consensus       151 lDR~~fd~~L~~~A~~~Gv~--~~~g-~V~~v~~~~-~g~i~~v~~~~g----~~i~ad~~IDASG~  209 (454)
T PF04820_consen  151 LDRAKFDQFLRRHAEERGVE--VIEG-TVVDVELDE-DGRITAVRLDDG----RTIEADFFIDASGR  209 (454)
T ss_dssp             EEHHHHHHHHHHHHHHTT-E--EEET--EEEEEE-T-TSEEEEEEETTS----EEEEESEEEE-SGG
T ss_pred             EeHHHHHHHHHHHHhcCCCE--EEeC-EEEEEEEcC-CCCEEEEEECCC----CEEEEeEEEECCCc
Confidence            35689999999999999999  6655 688888876 5444  455444    38999999999995

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.95  E-value=1.1e-08  Score=83.76  Aligned_cols=40  Identities=35%  Similarity=0.617  Sum_probs=36.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcCceee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~gg~~~   42 (259)
                      ++|+|||||++||++|++|.+++  .+++|||+++++||...
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~   42 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR   42 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence            47999999999999999999998  89999999999997653

>PLN02507 glutathione reductase

Probab=98.95  E-value=2.5e-08  Score=84.45  Aligned_cols=101  Identities=18%  Similarity=0.212  Sum_probs=79.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+-+|..|.+.|.+|+|+++.+.+-..                                         
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-----------------------------------------  241 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-----------------------------------------  241 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-----------------------------------------
Confidence            368999999999999999999999999999987532100                                         


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                                       +.  .++...+.+.+.+.+++  ++.+++|.++...+ +...+.+.++.    .+.+|.|++|
T Consensus       242 -----------------~d--~~~~~~l~~~l~~~GI~--i~~~~~V~~i~~~~-~~~~v~~~~g~----~i~~D~vl~a  295 (499)
T PLN02507        242 -----------------FD--DEMRAVVARNLEGRGIN--LHPRTNLTQLTKTE-GGIKVITDHGE----EFVADVVLFA  295 (499)
T ss_pred             -----------------cC--HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeC-CeEEEEECCCc----EEEcCEEEEe
Confidence                             00  66777788888888999  99999999998754 55666665543    6999999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       296 ~G--~~pn~~  303 (499)
T PLN02507        296 TG--RAPNTK  303 (499)
T ss_pred             ec--CCCCCC
Confidence            99  555543

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.94  E-value=2.9e-08  Score=79.96  Aligned_cols=44  Identities=34%  Similarity=0.528  Sum_probs=40.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS   45 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~   45 (259)
                      ..||+|||+|.+||++|+.|.+.|++|+|+|..+++||++....
T Consensus         7 ~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r   50 (450)
T COG1231           7 TADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTAR   50 (450)
T ss_pred             CCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEe
Confidence            47999999999999999999999999999999999998875543

>PRK07846 mycothione reductase; Reviewed

Probab=98.93  E-value=2.5e-08  Score=83.51  Aligned_cols=100  Identities=17%  Similarity=0.224  Sum_probs=74.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                           
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------------------  202 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-------------------------------------------  202 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------------------
Confidence            4689999999999999999999999999999975431                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +.             +.  .++.+.+.+.. +.+++  ++.++++++++..+ +...+.+.++.    .+.+|.|++|
T Consensus       203 --~~-------------~d--~~~~~~l~~l~-~~~v~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~i~~D~vl~a  257 (451)
T PRK07846        203 --RH-------------LD--DDISERFTELA-SKRWD--VRLGRNVVGVSQDG-SGVTLRLDDGS----TVEADVLLVA  257 (451)
T ss_pred             --cc-------------cC--HHHHHHHHHHH-hcCeE--EEeCCEEEEEEEcC-CEEEEEECCCc----EeecCEEEEE
Confidence              00             00  45555555544 45787  89999999998654 45666665543    7999999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       258 ~G--~~pn~~  265 (451)
T PRK07846        258 TG--RVPNGD  265 (451)
T ss_pred             EC--CccCcc
Confidence            99  556544

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.93  E-value=2.3e-08  Score=80.88  Aligned_cols=134  Identities=23%  Similarity=0.420  Sum_probs=92.2

Q ss_pred             eEEEECCChHHHHHHHHHHHc-------------CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccce
Q 024975            4 HVAVIGAGAAGLVVGHELLRE-------------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLR   70 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~-------------g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (259)
                      +|+|+|||+.|+-+|..|.++             .++|+++|+.+.+-                                
T Consensus       157 ti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL--------------------------------  204 (405)
T COG1252         157 TIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL--------------------------------  204 (405)
T ss_pred             EEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc--------------------------------
Confidence            699999999999999999774             13889999976540                                


Q ss_pred             eccccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCce
Q 024975           71 VNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV  150 (259)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~  150 (259)
                                   |             .++  +++..+.++.+++.|++  ++.++.|++++.+.     |++++++   
T Consensus       205 -------------p-------------~~~--~~l~~~a~~~L~~~GV~--v~l~~~Vt~v~~~~-----v~~~~g~---  246 (405)
T COG1252         205 -------------P-------------MFP--PKLSKYAERALEKLGVE--VLLGTPVTEVTPDG-----VTLKDGE---  246 (405)
T ss_pred             -------------c-------------CCC--HHHHHHHHHHHHHCCCE--EEcCCceEEECCCc-----EEEccCC---
Confidence                         1             111  88899999999999999  99999999998543     5666554   


Q ss_pred             EEEEeCEEEEccCCCCCCccCCCCCCCC-CCCceEEcccCCCCCCCCCCeEEEEccCcCHH
Q 024975          151 EEETFDAVVVCNGHFSVPRLAQVPGIDS-WPGKQMHSHNYRIPNPFQDQVVILIGHYASGL  210 (259)
Q Consensus       151 ~~~~ad~VIlAtG~~s~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~  210 (259)
                      ..+.++.+|.|+|....+..-++.+.+. -.|...........   ..+.|.++|--....
T Consensus       247 ~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~---~~~~IFa~GD~A~~~  304 (405)
T COG1252         247 EEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVP---GHPDIFAAGDCAAVI  304 (405)
T ss_pred             eeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccC---CCCCeEEEeccccCC
Confidence            2599999999999744444444322332 23444433322222   235588888655443

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.92  E-value=6.1e-09  Score=82.68  Aligned_cols=38  Identities=34%  Similarity=0.469  Sum_probs=34.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG   38 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g   38 (259)
                      ++.+|+|||||++|+++|..|.+.|++|+|+|+...+.
T Consensus         1 ~~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R   38 (420)
T KOG2614|consen    1 KEPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR   38 (420)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence            46899999999999999999999999999999976654

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.92  E-value=3e-08  Score=83.49  Aligned_cols=100  Identities=17%  Similarity=0.188  Sum_probs=78.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+-+|..|.+.|.+|+++++.+.+...                                          
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------  215 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG------------------------------------------  215 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC------------------------------------------
Confidence            57999999999999999999999999999987533100                                          


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                                      +.  .++...+.+.+.+.+++  ++.++++++++..+ +.+.+.+.++.    .+.+|.|++|+
T Consensus       216 ----------------~d--~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~-~~~~v~~~~g~----~l~~D~vl~a~  270 (466)
T PRK07845        216 ----------------ED--ADAAEVLEEVFARRGMT--VLKRSRAESVERTG-DGVVVTLTDGR----TVEGSHALMAV  270 (466)
T ss_pred             ----------------CC--HHHHHHHHHHHHHCCcE--EEcCCEEEEEEEeC-CEEEEEECCCc----EEEecEEEEee
Confidence                            00  55667788888888999  99999999998665 55666665543    79999999999


Q ss_pred             CCCCCCccC
Q 024975          163 GHFSVPRLA  171 (259)
Q Consensus       163 G~~s~~~~~  171 (259)
                      |  ..|+..
T Consensus       271 G--~~pn~~  277 (466)
T PRK07845        271 G--SVPNTA  277 (466)
T ss_pred             c--CCcCCC
Confidence            9  556543

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.91  E-value=3.8e-09  Score=85.19  Aligned_cols=96  Identities=23%  Similarity=0.272  Sum_probs=68.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||||++||++|+.|++.|++++++||++.+||.....+.                         .         
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k-------------------------~---------  169 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNK-------------------------T---------  169 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhc-------------------------c---------
Confidence            468999999999999999999999999999999999998654210                         0         


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD  147 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~  147 (259)
                       +|-            .-++---+...+.+....-+++  +...++|..+.-.- +.|+|.++...
T Consensus       170 -FP~------------~dcs~C~LaP~m~~v~~hp~i~--l~TyaeV~ev~G~v-GnF~vki~kkp  219 (622)
T COG1148         170 -FPT------------NDCSICILAPKMVEVSNHPNIE--LITYAEVEEVSGSV-GNFTVKIEKKP  219 (622)
T ss_pred             -CCC------------cccchhhccchhhhhccCCcee--eeeeeeeeeecccc-cceEEEEeccc
Confidence             000            0001122333445555555777  88899999988665 77999888643

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.91  E-value=2.3e-08  Score=90.31  Aligned_cols=35  Identities=31%  Similarity=0.414  Sum_probs=32.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .+||+|||+|.+|+++|..+.+.|.+|+|+||...
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            47999999999999999999999999999999764

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.89  E-value=2.6e-09  Score=90.10  Aligned_cols=56  Identities=25%  Similarity=0.260  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGH  164 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~  164 (259)
                      ..+.+.|.+.+++.|.+  |+++++|.+|..++++..++...++    ..+.+|.||.+...
T Consensus       224 ~al~~aL~~~~~~~Gg~--I~~~~~V~~I~v~~g~g~~~~~~~g----~~~~ad~vv~~~~~  279 (487)
T COG1233         224 GALVDALAELAREHGGE--IRTGAEVSQILVEGGKGVGVRTSDG----ENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHcCCE--EECCCceEEEEEeCCcceEEecccc----ceeccceeEecCch
Confidence            45667778888889999  9999999999988755566766665    36899999988774

>PTZ00058 glutathione reductase; Provisional

Probab=98.88  E-value=6.3e-08  Score=82.67  Aligned_cols=102  Identities=18%  Similarity=0.336  Sum_probs=77.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+-+|..|.+.|.+|+++++.+.+.                                           
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------------------------------------------  273 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------------------------------------------  273 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------------------
Confidence            3689999999999999999999999999999975331                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +.             +.  .++...+.+.+++.+++  ++.++++.++...+++...+...++.   ..+.+|.|++|
T Consensus       274 --~~-------------~d--~~i~~~l~~~L~~~GV~--i~~~~~V~~I~~~~~~~v~v~~~~~~---~~i~aD~VlvA  331 (561)
T PTZ00058        274 --RK-------------FD--ETIINELENDMKKNNIN--IITHANVEEIEKVKEKNLTIYLSDGR---KYEHFDYVIYC  331 (561)
T ss_pred             --cc-------------CC--HHHHHHHHHHHHHCCCE--EEeCCEEEEEEecCCCcEEEEECCCC---EEEECCEEEEC
Confidence              00             00  56677778888888999  99999999998654233444443322   46999999999


Q ss_pred             cCCCCCCcc
Q 024975          162 NGHFSVPRL  170 (259)
Q Consensus       162 tG~~s~~~~  170 (259)
                      +|  ..|+.
T Consensus       332 ~G--r~Pn~  338 (561)
T PTZ00058        332 VG--RSPNT  338 (561)
T ss_pred             cC--CCCCc
Confidence            99  45554

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.88  E-value=5.6e-08  Score=81.89  Aligned_cols=102  Identities=17%  Similarity=0.211  Sum_probs=77.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~---g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (259)
                      +.+++|||+|+.|+-+|..+...   |.+|+|+++.+.+...                                      
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~--------------------------------------  228 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG--------------------------------------  228 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc--------------------------------------
Confidence            36799999999999999876554   8999999997643100                                      


Q ss_pred             eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                                          +.  .++...+.+.+++.+++  ++.++.++++...+++...+.+.++.    .+.+|.|
T Consensus       229 --------------------~d--~~~~~~l~~~L~~~GI~--i~~~~~v~~i~~~~~~~~~v~~~~g~----~i~~D~v  280 (486)
T TIGR01423       229 --------------------FD--STLRKELTKQLRANGIN--IMTNENPAKVTLNADGSKHVTFESGK----TLDVDVV  280 (486)
T ss_pred             --------------------cC--HHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCceEEEEEcCCC----EEEcCEE
Confidence                                00  67778888888888999  99999999998754333556655443    7999999


Q ss_pred             EEccCCCCCCccC
Q 024975          159 VVCNGHFSVPRLA  171 (259)
Q Consensus       159 IlAtG~~s~~~~~  171 (259)
                      ++|+|  ..|+..
T Consensus       281 l~a~G--~~Pn~~  291 (486)
T TIGR01423       281 MMAIG--RVPRTQ  291 (486)
T ss_pred             EEeeC--CCcCcc
Confidence            99999  555543

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.88  E-value=2.3e-08  Score=77.54  Aligned_cols=42  Identities=36%  Similarity=0.566  Sum_probs=38.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~   44 (259)
                      +.+|+|||+|++||+||+.|.++ .+|++||.+..+||..+..
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv   49 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTV   49 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCcccee
Confidence            47899999999999999999988 7999999999999877654

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.86  E-value=5.7e-08  Score=81.05  Aligned_cols=97  Identities=21%  Similarity=0.335  Sum_probs=74.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                                           
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~-------------------------------------------  174 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN-------------------------------------------  174 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc-------------------------------------------
Confidence            5899999999999999999999999999998653200                                           


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                                    ..+.  .++...+.+.+++.|++  ++++++|.++...+  .. +.+.++.    .+.+|.||+|+
T Consensus       175 --------------~~~~--~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~--~~-v~~~~g~----~i~~D~vi~a~  229 (427)
T TIGR03385       175 --------------KLFD--EEMNQIVEEELKKHEIN--LRLNEEVDSIEGEE--RV-KVFTSGG----VYQADMVILAT  229 (427)
T ss_pred             --------------cccC--HHHHHHHHHHHHHcCCE--EEeCCEEEEEecCC--CE-EEEcCCC----EEEeCEEEECC
Confidence                          0000  56667778888888999  99999999997543  23 3444443    79999999999


Q ss_pred             CCCCCCc
Q 024975          163 GHFSVPR  169 (259)
Q Consensus       163 G~~s~~~  169 (259)
                      |  ..|+
T Consensus       230 G--~~p~  234 (427)
T TIGR03385       230 G--IKPN  234 (427)
T ss_pred             C--ccCC
Confidence            9  4444

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.86  E-value=6.6e-08  Score=80.96  Aligned_cols=98  Identities=22%  Similarity=0.364  Sum_probs=76.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+-+|..|.+.|.+|+++++.+.+.                                            
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------------------  194 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL--------------------------------------------  194 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC--------------------------------------------
Confidence            579999999999999999999999999999965320                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                       +.             +.  .++...+.+.+.+.+++  ++++++|.++...+ +.+.+..+++     .+.+|.|++|+
T Consensus       195 -~~-------------~~--~~~~~~l~~~l~~~gV~--v~~~~~v~~i~~~~-~~v~v~~~~g-----~i~~D~vl~a~  250 (441)
T PRK08010        195 -PR-------------ED--RDIADNIATILRDQGVD--IILNAHVERISHHE-NQVQVHSEHA-----QLAVDALLIAS  250 (441)
T ss_pred             -CC-------------cC--HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEEcCC-----eEEeCEEEEee
Confidence             00             00  56667788888888999  99999999998764 4455554332     48899999999


Q ss_pred             CCCCCCcc
Q 024975          163 GHFSVPRL  170 (259)
Q Consensus       163 G~~s~~~~  170 (259)
                      |  ..|+.
T Consensus       251 G--~~pn~  256 (441)
T PRK08010        251 G--RQPAT  256 (441)
T ss_pred             c--CCcCC
Confidence            9  55554

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.86  E-value=4.5e-08  Score=82.06  Aligned_cols=95  Identities=24%  Similarity=0.326  Sum_probs=73.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                            
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--------------------------------------------  185 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL--------------------------------------------  185 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC--------------------------------------------
Confidence            589999999999999999999999999998865320                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                       +            ..+.  .++.+++.+.+++.+++  ++.+++|+++...+ +.+.+.+++ .    .+.+|.||+|+
T Consensus       186 -~------------~~~~--~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~-~~~~v~~~~-~----~i~~d~vi~a~  242 (444)
T PRK09564        186 -P------------DSFD--KEITDVMEEELRENGVE--LHLNEFVKSLIGED-KVEGVVTDK-G----EYEADVVIVAT  242 (444)
T ss_pred             -c------------hhcC--HHHHHHHHHHHHHCCCE--EEcCCEEEEEecCC-cEEEEEeCC-C----EEEcCEEEECc
Confidence             0            0001  67778888888889999  99999999996532 334444433 2    68999999999


Q ss_pred             CC
Q 024975          163 GH  164 (259)
Q Consensus       163 G~  164 (259)
                      |.
T Consensus       243 G~  244 (444)
T PRK09564        243 GV  244 (444)
T ss_pred             CC
Confidence            94

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.86  E-value=1.1e-08  Score=83.02  Aligned_cols=38  Identities=37%  Similarity=0.501  Sum_probs=34.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG   38 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g   38 (259)
                      |+.||+|||||++|+.+|+.|+++|++|+|+|+.+...
T Consensus         1 ~~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~   38 (436)
T PRK05335          1 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK   38 (436)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence            67899999999999999999999999999999876543

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.85  E-value=4.6e-09  Score=87.88  Aligned_cols=43  Identities=40%  Similarity=0.534  Sum_probs=40.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~   44 (259)
                      +++|+|||||++||+||.+|.+.|++|+|+|..+++||+....
T Consensus        15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~   57 (501)
T KOG0029|consen   15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTF   57 (501)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEE
Confidence            5799999999999999999999999999999999999987654

>TIGR03452 mycothione_red mycothione reductase

Probab=98.85  E-value=7.5e-08  Score=80.70  Aligned_cols=99  Identities=17%  Similarity=0.227  Sum_probs=73.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+...                                         
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-----------------------------------------  207 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-----------------------------------------  207 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-----------------------------------------
Confidence            368999999999999999999999999999987533100                                         


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                       +                .  .++...+.+.. +.+++  ++.+++|++++..+ +.+.+.+.++.    .+.+|.|++|
T Consensus       208 -~----------------d--~~~~~~l~~~~-~~gI~--i~~~~~V~~i~~~~-~~v~v~~~~g~----~i~~D~vl~a  260 (452)
T TIGR03452       208 -L----------------D--EDISDRFTEIA-KKKWD--IRLGRNVTAVEQDG-DGVTLTLDDGS----TVTADVLLVA  260 (452)
T ss_pred             -c----------------C--HHHHHHHHHHH-hcCCE--EEeCCEEEEEEEcC-CeEEEEEcCCC----EEEcCEEEEe
Confidence             0                0  44455555544 35788  89999999998765 45666665543    7999999999


Q ss_pred             cCCCCCCcc
Q 024975          162 NGHFSVPRL  170 (259)
Q Consensus       162 tG~~s~~~~  170 (259)
                      +|  ..|+.
T Consensus       261 ~G--~~pn~  267 (452)
T TIGR03452       261 TG--RVPNG  267 (452)
T ss_pred             ec--cCcCC
Confidence            99  55554

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.84  E-value=2e-08  Score=85.33  Aligned_cols=163  Identities=18%  Similarity=0.163  Sum_probs=85.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCC-------CC----------CCCcccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVD-------PN----------RYPVHSS   64 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~-------~~----------~~~~~~~   64 (259)
                      ++||+|||+|.+||.+|..+++.|.+|+|+||....+|.........+......       +.          .......
T Consensus         6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~dqd   85 (562)
T COG1053           6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGDQD   85 (562)
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCCHH
Confidence            579999999999999999999999999999998766533222211111111111       00          0000111


Q ss_pred             ccccceeccccccceecC--CCCCccCCC------CCC---CCCCC---CCHHHHHHHHHHHHHH-hCCceeEEeceeEE
Q 024975           65 LYKSLRVNLPRELMGFQA--YPFVARNYE------GSV---DLRRY---PGHEEVLRYLQNFARE-FGVDQVVRLHTEVL  129 (259)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~---~~~~~---~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~  129 (259)
                      ....+...++.....+..  .++......      ...   ....|   .....+...|.+.+.+ .+++  +..+..++
T Consensus        86 ~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~--~~~~~~~~  163 (562)
T COG1053          86 AVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIE--IFDEYFVL  163 (562)
T ss_pred             HHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcch--hhhhhhhh
Confidence            112222222222111111  111111000      000   01122   1235566666666655 3445  67777888


Q ss_pred             EEEEeCCC-cEEEEEEe-cCCceEEEEeCEEEEccCCCC
Q 024975          130 NARLVESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       130 ~i~~~~~~-~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      ++..++++ ...+...+ .++....+.++.||+|||...
T Consensus       164 ~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g  202 (562)
T COG1053         164 DLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG  202 (562)
T ss_pred             hheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence            88766533 23333332 235667788999999999765

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=98.83  E-value=2e-08  Score=81.01  Aligned_cols=133  Identities=18%  Similarity=0.158  Sum_probs=88.2

Q ss_pred             CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCc------cccccccceeccccccceecC---CCCCccCCCCCCC
Q 024975           25 GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPV------HSSLYKSLRVNLPRELMGFQA---YPFVARNYEGSVD   95 (259)
Q Consensus        25 g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~   95 (259)
                      |.+|+|+|+++.+|.....+.+.+++.++..+...+.      ....+..+....+.+...|..   .++..     ...
T Consensus         1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~-----e~~   75 (376)
T TIGR03862         1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETFV-----GSS   75 (376)
T ss_pred             CCeEEEEeCCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEE-----CCC
Confidence            4689999999999977777777777666654321110      011233333334444333321   11111     245


Q ss_pred             CCCCC---CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCcc
Q 024975           96 LRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRL  170 (259)
Q Consensus        96 ~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~  170 (259)
                      .+.||   ...++...|...+++.+++  ++++++|++|  .+ +.|.+.+..+.   ..+.||.||+|||+.+.|..
T Consensus        76 grvfP~S~~A~sVv~~L~~~l~~~gV~--i~~~~~V~~i--~~-~~~~v~~~~~~---~~~~a~~vIlAtGG~s~p~~  145 (376)
T TIGR03862        76 GRVFPVEMKAAPLLRAWLKRLAEQGVQ--FHTRHRWIGW--QG-GTLRFETPDGQ---STIEADAVVLALGGASWSQL  145 (376)
T ss_pred             CEECCCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEE--eC-CcEEEEECCCc---eEEecCEEEEcCCCcccccc
Confidence            67787   4578999999999999999  9999999999  22 45888775432   35899999999998665544

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.83  E-value=6.1e-08  Score=76.23  Aligned_cols=105  Identities=27%  Similarity=0.331  Sum_probs=90.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +.+++|||+|..||-++.--.+.|-+|+++|-.+.+|+..-                                       
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD---------------------------------------  251 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD---------------------------------------  251 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC---------------------------------------
Confidence            46899999999999999999999999999999877654421                                       


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIl  160 (259)
                                           .++.+.++..+++.+++  +.++++|+......++...+++++.. +...++++|.+.+
T Consensus       252 ---------------------~Eisk~~qr~L~kQgik--F~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLV  308 (506)
T KOG1335|consen  252 ---------------------GEISKAFQRVLQKQGIK--FKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLV  308 (506)
T ss_pred             ---------------------HHHHHHHHHHHHhcCce--eEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEE
Confidence                                 78889999999999999  99999999999987667888887754 6678899999999


Q ss_pred             ccCCCCCCcc
Q 024975          161 CNGHFSVPRL  170 (259)
Q Consensus       161 AtG~~s~~~~  170 (259)
                      |+|  ..|..
T Consensus       309 siG--RrP~t  316 (506)
T KOG1335|consen  309 SIG--RRPFT  316 (506)
T ss_pred             Ecc--Ccccc
Confidence            999  55554

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.80  E-value=8.1e-08  Score=80.24  Aligned_cols=95  Identities=18%  Similarity=0.249  Sum_probs=74.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+-+|..|.+.|.+|+++++.+.+...                                          
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~------------------------------------------  186 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL------------------------------------------  186 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh------------------------------------------
Confidence            58999999999999999999999999999997543100                                          


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                                      +.  .++...+.+.+++.|++  ++.+++|.+++.   .  .+.+.++.    .+.+|.|++|+
T Consensus       187 ----------------~d--~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~---~--~v~~~~g~----~~~~D~vl~a~  237 (438)
T PRK13512        187 ----------------MD--ADMNQPILDELDKREIP--YRLNEEIDAING---N--EVTFKSGK----VEHYDMIIEGV  237 (438)
T ss_pred             ----------------cC--HHHHHHHHHHHHhcCCE--EEECCeEEEEeC---C--EEEECCCC----EEEeCEEEECc
Confidence                            00  56667778888888999  999999999862   2  35555543    68999999999


Q ss_pred             CCCCCCcc
Q 024975          163 GHFSVPRL  170 (259)
Q Consensus       163 G~~s~~~~  170 (259)
                      |  ..|+.
T Consensus       238 G--~~pn~  243 (438)
T PRK13512        238 G--THPNS  243 (438)
T ss_pred             C--CCcCh
Confidence            9  55543

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.80  E-value=1.8e-07  Score=78.82  Aligned_cols=103  Identities=26%  Similarity=0.362  Sum_probs=76.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+..                                          
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------  206 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP------------------------------------------  206 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc------------------------------------------
Confidence            36899999999999999999999999999999754310                                          


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                         .             +  ..++...+.+.+++. ++  +++++++.+++..++...++...+  +....+.+|.|++|
T Consensus       207 ---~-------------~--d~~~~~~~~~~l~~~-I~--i~~~~~v~~i~~~~~~~v~~~~~~--~~~~~i~~D~vi~a  263 (460)
T PRK06292        207 ---L-------------E--DPEVSKQAQKILSKE-FK--IKLGAKVTSVEKSGDEKVEELEKG--GKTETIEADYVLVA  263 (460)
T ss_pred             ---c-------------h--hHHHHHHHHHHHhhc-cE--EEcCCEEEEEEEcCCceEEEEEcC--CceEEEEeCEEEEc
Confidence               0             0  056667777777777 88  999999999986542133443222  22347999999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       264 ~G--~~p~~~  271 (460)
T PRK06292        264 TG--RRPNTD  271 (460)
T ss_pred             cC--CccCCC
Confidence            99  566654

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.80  E-value=7.1e-08  Score=85.92  Aligned_cols=100  Identities=20%  Similarity=0.234  Sum_probs=77.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+-+|..|.+.|.+|+|+++.+.+-..                                          
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~------------------------------------------  178 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK------------------------------------------  178 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh------------------------------------------
Confidence            57999999999999999999999999999986532000                                          


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                                     .+.  ......+.+.+.+.|++  ++.++.++++.... ....|.+.++.    .+.+|.||+|+
T Consensus       179 ---------------~ld--~~~~~~l~~~l~~~GV~--v~~~~~v~~i~~~~-~~~~v~~~dG~----~i~~D~Vi~a~  234 (785)
T TIGR02374       179 ---------------QLD--QTAGRLLQRELEQKGLT--FLLEKDTVEIVGAT-KADRIRFKDGS----SLEADLIVMAA  234 (785)
T ss_pred             ---------------hcC--HHHHHHHHHHHHHcCCE--EEeCCceEEEEcCC-ceEEEEECCCC----EEEcCEEEECC
Confidence                           000  55667777888888999  99999999887543 44556676654    79999999999


Q ss_pred             CCCCCCcc
Q 024975          163 GHFSVPRL  170 (259)
Q Consensus       163 G~~s~~~~  170 (259)
                      |  ..|+.
T Consensus       235 G--~~Pn~  240 (785)
T TIGR02374       235 G--IRPND  240 (785)
T ss_pred             C--CCcCc
Confidence            9  45544

>PRK14694 putative mercuric reductase; Provisional

Probab=98.78  E-value=2e-07  Score=78.61  Aligned_cols=99  Identities=17%  Similarity=0.243  Sum_probs=75.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++...+                                            
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l--------------------------------------------  213 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL--------------------------------------------  213 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC--------------------------------------------
Confidence            368999999999999999999999999999874211                                            


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +.             +  ..++...+.+.+++.+++  ++.+++|.+++..+ +.+.+.+.+ .    .+.+|.||+|
T Consensus       214 --~~-------------~--~~~~~~~l~~~l~~~GI~--v~~~~~v~~i~~~~-~~~~v~~~~-~----~i~~D~vi~a  268 (468)
T PRK14694        214 --SQ-------------E--DPAVGEAIEAAFRREGIE--VLKQTQASEVDYNG-REFILETNA-G----TLRAEQLLVA  268 (468)
T ss_pred             --CC-------------C--CHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEECC-C----EEEeCEEEEc
Confidence              00             0  056677788888888999  99999999998654 445554432 2    5999999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       269 ~G--~~pn~~  276 (468)
T PRK14694        269 TG--RTPNTE  276 (468)
T ss_pred             cC--CCCCcC
Confidence            99  555543

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.77  E-value=1.7e-07  Score=75.47  Aligned_cols=58  Identities=24%  Similarity=0.400  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      .++.+.+.+.+..+|.+  ++++++|.++...++....+.+.+|.    .+.+|+||+|.|+.+
T Consensus       173 ~~vvkni~~~l~~~G~e--i~f~t~VeDi~~~~~~~~~v~~~~g~----~i~~~~vvlA~Grsg  230 (486)
T COG2509         173 PKVVKNIREYLESLGGE--IRFNTEVEDIEIEDNEVLGVKLTKGE----EIEADYVVLAPGRSG  230 (486)
T ss_pred             HHHHHHHHHHHHhcCcE--EEeeeEEEEEEecCCceEEEEccCCc----EEecCEEEEccCcch
Confidence            46777888899999999  99999999999987445778888875    899999999999844

>PRK14727 putative mercuric reductase; Provisional

Probab=98.77  E-value=2.1e-07  Score=78.70  Aligned_cols=99  Identities=13%  Similarity=0.139  Sum_probs=75.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +.+++|||+|+.|+-+|..|.+.|.+|+++++...+                                            
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l--------------------------------------------  223 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL--------------------------------------------  223 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC--------------------------------------------
Confidence            368999999999999999999999999999874210                                            


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +.             +  ..++...+.+.+++.+++  ++.+++|+.++..+ +.+.+...++     .+.+|.||+|
T Consensus       224 --~~-------------~--d~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~-~~~~v~~~~g-----~i~aD~VlvA  278 (479)
T PRK14727        224 --FR-------------E--DPLLGETLTACFEKEGIE--VLNNTQASLVEHDD-NGFVLTTGHG-----ELRAEKLLIS  278 (479)
T ss_pred             --Cc-------------c--hHHHHHHHHHHHHhCCCE--EEcCcEEEEEEEeC-CEEEEEEcCC-----eEEeCEEEEc
Confidence              00             0  056677788888888999  99999999998765 5566654432     5889999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       279 ~G--~~pn~~  286 (479)
T PRK14727        279 TG--RHANTH  286 (479)
T ss_pred             cC--CCCCcc
Confidence            99  455543

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.77  E-value=1.9e-07  Score=79.21  Aligned_cols=99  Identities=20%  Similarity=0.221  Sum_probs=76.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+-+|..|.+.|.+|+++++.. +.   .                                        
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l---~----------------------------------------  218 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-PL---R----------------------------------------  218 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-cc---c----------------------------------------
Confidence            589999999999999999999999999998632 10   0                                        


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                                     .+.  .++.+.+.+.+++.+++  ++.++.+..+...+ +...+.+.++.    .+.+|.|++|+
T Consensus       219 ---------------~~d--~~~~~~l~~~l~~~GV~--i~~~~~v~~v~~~~-~~~~v~~~~g~----~i~~D~vl~a~  274 (499)
T PTZ00052        219 ---------------GFD--RQCSEKVVEYMKEQGTL--FLEGVVPINIEKMD-DKIKVLFSDGT----TELFDTVLYAT  274 (499)
T ss_pred             ---------------cCC--HHHHHHHHHHHHHcCCE--EEcCCeEEEEEEcC-CeEEEEECCCC----EEEcCEEEEee
Confidence                           000  56677888888888999  99999999888754 44556665543    68999999999


Q ss_pred             CCCCCCccC
Q 024975          163 GHFSVPRLA  171 (259)
Q Consensus       163 G~~s~~~~~  171 (259)
                      |  ..|+..
T Consensus       275 G--~~pn~~  281 (499)
T PTZ00052        275 G--RKPDIK  281 (499)
T ss_pred             C--CCCCcc
Confidence            9  555543

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.77  E-value=4.8e-08  Score=79.88  Aligned_cols=37  Identities=32%  Similarity=0.434  Sum_probs=33.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG   39 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg   39 (259)
                      .||+|||||++|+.+|..|+++|++|+|+|+.+..+.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~   37 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT   37 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence            3799999999999999999999999999998776543

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK07208 hypothetical protein; Provisional

Probab=98.76  E-value=1.2e-08  Score=86.36  Aligned_cols=42  Identities=43%  Similarity=0.569  Sum_probs=39.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      ++||+|||||++||++|+.|.++|++|+|+|+.+.+||.+..
T Consensus         4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s   45 (479)
T PRK07208          4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT   45 (479)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence            579999999999999999999999999999999999988644

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.75  E-value=2.8e-07  Score=77.80  Aligned_cols=102  Identities=20%  Similarity=0.211  Sum_probs=77.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+-+|..|.+.|.+|+++++. .+.                                            
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l--------------------------------------------  215 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL--------------------------------------------  215 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc--------------------------------------------
Confidence            57999999999999999999999999999873 210                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                       +             .+.  .++..++.+.+++.+++  ++.++.+..+...+ +...+...++.. ...+.+|.|++|+
T Consensus       216 -~-------------~~d--~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~-~~~~v~~~~~~~-~~~i~~D~vl~a~  275 (484)
T TIGR01438       216 -R-------------GFD--QDCANKVGEHMEEHGVK--FKRQFVPIKVEQIE-AKVKVTFTDSTN-GIEEEYDTVLLAI  275 (484)
T ss_pred             -c-------------ccC--HHHHHHHHHHHHHcCCE--EEeCceEEEEEEcC-CeEEEEEecCCc-ceEEEeCEEEEEe
Confidence             0             000  66777888888888999  99999998988664 445566554321 2368999999999


Q ss_pred             CCCCCCccC
Q 024975          163 GHFSVPRLA  171 (259)
Q Consensus       163 G~~s~~~~~  171 (259)
                      |  ..|+..
T Consensus       276 G--~~pn~~  282 (484)
T TIGR01438       276 G--RDACTR  282 (484)
T ss_pred             c--CCcCCC
Confidence            9  555543

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.75  E-value=1.7e-07  Score=77.85  Aligned_cols=100  Identities=26%  Similarity=0.422  Sum_probs=78.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+.+|..|.++|++|+++|+.+.+++...                                        
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~----------------------------------------  176 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL----------------------------------------  176 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh----------------------------------------
Confidence            6899999999999999999999999999999876543321                                        


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEE--EEEEecCCceEEEEeCEEEE
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK--VKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~--v~~~~g~~~~~~~~ad~VIl  160 (259)
                                       .  ..+...+.+..++.+++  ++.+.++..++...+....  +...++.    .+.+|.+++
T Consensus       177 -----------------~--~~~~~~~~~~l~~~gi~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~d~~~~  231 (415)
T COG0446         177 -----------------D--PEVAEELAELLEKYGVE--LLLGTKVVGVEGKGNTLVVERVVGIDGE----EIKADLVII  231 (415)
T ss_pred             -----------------h--HHHHHHHHHHHHHCCcE--EEeCCceEEEEcccCcceeeEEEEeCCc----EEEeeEEEE
Confidence                             0  45667788888888988  8999999999976522222  3444443    799999999


Q ss_pred             ccCCCCCCc
Q 024975          161 CNGHFSVPR  169 (259)
Q Consensus       161 AtG~~s~~~  169 (259)
                      ++|  ..|+
T Consensus       232 ~~g--~~p~  238 (415)
T COG0446         232 GPG--ERPN  238 (415)
T ss_pred             eec--cccc
Confidence            999  4553

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.75  E-value=2.9e-08  Score=81.53  Aligned_cols=148  Identities=19%  Similarity=0.096  Sum_probs=81.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .|||+|||||.||+.||...++.|.+++++--+..-=|.+.-++.      --.+.+..+... .+.+--.. ....+..
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPa------IGG~~KG~lvrE-IDALGG~M-g~~~D~~   75 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPA------IGGPGKGHLVRE-IDALGGLM-GKAADKA   75 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccc------cCCcccceeEEe-ehhccchH-HHhhhhc
Confidence            389999999999999999999999999999887432222221111      111111000000 00000000 0000000


Q ss_pred             CCCCCccCCCCCCCCCCC-----CCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCC-cEEEEEEecCCceEEEE
Q 024975           82 AYPFVARNYEGSVDLRRY-----PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEET  154 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~~  154 (259)
                      ...+...+.  ...+...     ..+..+...++..+... ++   ..++..|+++...++. .+.|.+.+|.    .+.
T Consensus        76 ~IQ~r~LN~--sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL---~l~q~~v~dli~e~~~~v~GV~t~~G~----~~~  146 (621)
T COG0445          76 GIQFRMLNS--SKGPAVRAPRAQADKWLYRRAMKNELENQPNL---HLLQGEVEDLIVEEGQRVVGVVTADGP----EFH  146 (621)
T ss_pred             CCchhhccC--CCcchhcchhhhhhHHHHHHHHHHHHhcCCCc---eehHhhhHHHhhcCCCeEEEEEeCCCC----eee
Confidence            111111111  1112222     22345666677766554 44   4667788898876643 5778888876    899


Q ss_pred             eCEEEEccCCCC
Q 024975          155 FDAVVVCNGHFS  166 (259)
Q Consensus       155 ad~VIlAtG~~s  166 (259)
                      |+.||++||.+-
T Consensus       147 a~aVVlTTGTFL  158 (621)
T COG0445         147 AKAVVLTTGTFL  158 (621)
T ss_pred             cCEEEEeecccc
Confidence            999999999643

>PRK13748 putative mercuric reductase; Provisional

Probab=98.74  E-value=2.4e-07  Score=79.97  Aligned_cols=99  Identities=19%  Similarity=0.285  Sum_probs=76.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +.+++|||+|+.|+-+|..|.+.|.+|+|+++...+    .                                       
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l----~---------------------------------------  306 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF----F---------------------------------------  306 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc----c---------------------------------------
Confidence            368999999999999999999999999999884211    0                                       


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        .              +  ..++...+.+.+++.+++  ++.+++|.+++..+ +.+.+.+.++     .+.+|.||+|
T Consensus       307 --~--------------~--d~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~-~~~~v~~~~~-----~i~~D~vi~a  360 (561)
T PRK13748        307 --R--------------E--DPAIGEAVTAAFRAEGIE--VLEHTQASQVAHVD-GEFVLTTGHG-----ELRADKLLVA  360 (561)
T ss_pred             --c--------------c--CHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CEEEEEecCC-----eEEeCEEEEc
Confidence              0              0  056777888888888999  99999999998654 5555554432     5899999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       361 ~G--~~pn~~  368 (561)
T PRK13748        361 TG--RAPNTR  368 (561)
T ss_pred             cC--CCcCCC
Confidence            99  566653

>PLN02546 glutathione reductase

Probab=98.74  E-value=2.4e-07  Score=79.17  Aligned_cols=102  Identities=18%  Similarity=0.227  Sum_probs=75.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+|+|||+|+.|+-+|..|.+.+.+|+|+++.+.+...                                         
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-----------------------------------------  290 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-----------------------------------------  290 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-----------------------------------------
Confidence            368999999999999999999999999999987533100                                         


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                                       +.  .++..++.+.+.+.|++  ++.++++.++....++...+...++    ....+|.||+|
T Consensus       291 -----------------~d--~~~~~~l~~~L~~~GV~--i~~~~~v~~i~~~~~g~v~v~~~~g----~~~~~D~Viva  345 (558)
T PLN02546        291 -----------------FD--EEVRDFVAEQMSLRGIE--FHTEESPQAIIKSADGSLSLKTNKG----TVEGFSHVMFA  345 (558)
T ss_pred             -----------------cC--HHHHHHHHHHHHHCCcE--EEeCCEEEEEEEcCCCEEEEEECCe----EEEecCEEEEe
Confidence                             00  66777888888888999  9999999999865434344443321    23458999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       346 ~G--~~Pnt~  353 (558)
T PLN02546        346 TG--RKPNTK  353 (558)
T ss_pred             ec--cccCCC
Confidence            99  555543

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.73  E-value=1.9e-07  Score=83.41  Aligned_cols=101  Identities=20%  Similarity=0.155  Sum_probs=78.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+-+|..|.+.|.+|+|+++.+.+-                                            
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll--------------------------------------------  181 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM--------------------------------------------  181 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch--------------------------------------------
Confidence            579999999999999999999999999999875320                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC-CcEEEEEEecCCceEEEEeCEEEEc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                       +....              .+....+.+.+++.|++  ++.++.+.++..... ....+.+.++.    .+.+|.||+|
T Consensus       182 -~~~ld--------------~~~~~~l~~~L~~~GV~--v~~~~~v~~I~~~~~~~~~~v~~~dG~----~i~~D~Vv~A  240 (847)
T PRK14989        182 -AEQLD--------------QMGGEQLRRKIESMGVR--VHTSKNTLEIVQEGVEARKTMRFADGS----ELEVDFIVFS  240 (847)
T ss_pred             -hhhcC--------------HHHHHHHHHHHHHCCCE--EEcCCeEEEEEecCCCceEEEEECCCC----EEEcCEEEEC
Confidence             00000              66677888888899999  999999999975431 33456666655    7999999999


Q ss_pred             cCCCCCCcc
Q 024975          162 NGHFSVPRL  170 (259)
Q Consensus       162 tG~~s~~~~  170 (259)
                      +|  ..|+.
T Consensus       241 ~G--~rPn~  247 (847)
T PRK14989        241 TG--IRPQD  247 (847)
T ss_pred             CC--cccCc
Confidence            99  55553

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.73  E-value=1.8e-08  Score=81.48  Aligned_cols=42  Identities=29%  Similarity=0.498  Sum_probs=38.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      |+|++|||||++|+++|..|.+.|.+|+|+|+.+.+||.+..
T Consensus         1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~   42 (377)
T TIGR00031         1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD   42 (377)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence            579999999999999999999999999999999999987643

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.72  E-value=1.9e-08  Score=84.55  Aligned_cols=41  Identities=29%  Similarity=0.587  Sum_probs=37.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcCceeee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~gg~~~~   43 (259)
                      ++|+|||||++||+||+.|.+.|  .+|+|+|+++.+||.+..
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t   43 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT   43 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence            47999999999999999999987  899999999999987654

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.72  E-value=1.8e-07  Score=76.19  Aligned_cols=159  Identities=18%  Similarity=0.174  Sum_probs=85.8

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-----------CCc-ccccccccee
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-----------YPV-HSSLYKSLRV   71 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~   71 (259)
                      ||+|||+|.+||++|+.|.+. .+|+|+-|.+...+...+........+....+.           ..+ .......+..
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~   87 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS   87 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            899999999999999999998 999999998654222211111110001111100           000 0011111111


Q ss_pred             ccccccceec--CCCCCccCCC------CCCC-C------CCCCCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeC
Q 024975           72 NLPRELMGFQ--AYPFVARNYE------GSVD-L------RRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVE  135 (259)
Q Consensus        72 ~~~~~~~~~~--~~~~~~~~~~------~~~~-~------~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~  135 (259)
                      ..+.....+.  ..+|+.....      .... .      .. ..+..+...|...+.+ -+++  ++.++.+.++..++
T Consensus        88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~-~TG~~I~~~L~~~v~~~p~I~--v~e~~~a~~li~~~  164 (518)
T COG0029          88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAAD-ATGKEIMTALLKKVRNRPNIT--VLEGAEALDLIIED  164 (518)
T ss_pred             hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecC-CccHHHHHHHHHHHhcCCCcE--EEecchhhhhhhcC
Confidence            1111111111  1222221100      0000 0      01 2346777888877765 5888  88888999988877


Q ss_pred             CCcE-EEEEEecCCceEEEEeCEEEEccCCCC
Q 024975          136 SNKW-KVKSRKKDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       136 ~~~~-~v~~~~g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      +... .+.+.+..++...+.++.||+|||+.+
T Consensus       165 ~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g  196 (518)
T COG0029         165 GIGVAGVLVLNRNGELGTFRAKAVVLATGGLG  196 (518)
T ss_pred             CceEeEEEEecCCCeEEEEecCeEEEecCCCc
Confidence            4244 566654322457889999999999744

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.72  E-value=2e-08  Score=84.64  Aligned_cols=43  Identities=30%  Similarity=0.478  Sum_probs=39.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc----CCcEEEEeeCCCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~----g~~v~v~e~~~~~gg~~~~~   44 (259)
                      ++||+|||||++||++|+.|.++    |.+|+|+|+++.+||.+...
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~   48 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTV   48 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEE
Confidence            58999999999999999999998    99999999999999886543

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PLN02268 probable polyamine oxidase

Probab=98.71  E-value=2.2e-08  Score=83.69  Aligned_cols=42  Identities=29%  Similarity=0.466  Sum_probs=39.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~   44 (259)
                      .+|+|||||++||+||+.|.+.|.+|+|+|+.+++||.....
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~   42 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTD   42 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeec
Confidence            489999999999999999999999999999999999987654

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.70  E-value=8.1e-07  Score=73.98  Aligned_cols=90  Identities=30%  Similarity=0.413  Sum_probs=70.6

Q ss_pred             eEEEECCChHHHHHHHHHHH--------------cCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccc
Q 024975            4 HVAVIGAGAAGLVVGHELLR--------------EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSL   69 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~--------------~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (259)
                      +++|||+|+.|+-+|..|.+              .+.+|+++++.+.+..                              
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~------------------------------  224 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG------------------------------  224 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc------------------------------
Confidence            79999999999999999976              3678999998753310                              


Q ss_pred             eeccccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           70 RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                                                  .++  ..+.+++.+.+.+.|++  ++.+++|.++..   +  .+.+++|.  
T Consensus       225 ----------------------------~~~--~~~~~~~~~~L~~~gV~--v~~~~~v~~v~~---~--~v~~~~g~--  265 (424)
T PTZ00318        225 ----------------------------SFD--QALRKYGQRRLRRLGVD--IRTKTAVKEVLD---K--EVVLKDGE--  265 (424)
T ss_pred             ----------------------------cCC--HHHHHHHHHHHHHCCCE--EEeCCeEEEEeC---C--EEEECCCC--
Confidence                                        011  56778888888899999  999999998863   2  35566654  


Q ss_pred             eEEEEeCEEEEccCC
Q 024975          150 VEEETFDAVVVCNGH  164 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~  164 (259)
                        .+.+|.||+|+|.
T Consensus       266 --~i~~d~vi~~~G~  278 (424)
T PTZ00318        266 --VIPTGLVVWSTGV  278 (424)
T ss_pred             --EEEccEEEEccCC
Confidence              7999999999994

>PRK07233 hypothetical protein; Provisional

Probab=98.68  E-value=2.8e-08  Score=83.06  Aligned_cols=40  Identities=38%  Similarity=0.689  Sum_probs=37.3

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      +|+|||||++||++|+.|.+.|++|+|+|+++.+||.+..
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s   40 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS   40 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence            6899999999999999999999999999999999987643

>PLN02576 protoporphyrinogen oxidase

Probab=98.67  E-value=3e-08  Score=84.34  Aligned_cols=43  Identities=37%  Similarity=0.572  Sum_probs=39.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc-CCcEEEEeeCCCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~-g~~v~v~e~~~~~gg~~~~~   44 (259)
                      ++||+|||||++||++|++|.+. |.+|+|+|+.+.+||.+...
T Consensus        12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~   55 (496)
T PLN02576         12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSV   55 (496)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEe
Confidence            46899999999999999999999 99999999999999886544

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.67  E-value=3.5e-08  Score=83.17  Aligned_cols=43  Identities=30%  Similarity=0.421  Sum_probs=38.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc------CCcEEEEeeCCCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE------GHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~------g~~v~v~e~~~~~gg~~~~~   44 (259)
                      |++|+|||||++||++|+.|.+.      +.+|+|+|+++++||.+...
T Consensus         1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~   49 (463)
T PRK12416          1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSV   49 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEE
Confidence            57899999999999999999986      37999999999999886543

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.66  E-value=2.6e-08  Score=83.41  Aligned_cols=57  Identities=16%  Similarity=0.107  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      ..+++.|...+.+.|+.  +..++.|++|....++.+.|++..|+     +++.+||.|+|.|.
T Consensus       187 ~~lC~ala~~A~~~GA~--viE~cpV~~i~~~~~~~~gVeT~~G~-----iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  187 AGLCQALARAASALGAL--VIENCPVTGLHVETDKFGGVETPHGS-----IETECVVNAAGVWA  243 (856)
T ss_pred             HHHHHHHHHHHHhcCcE--EEecCCcceEEeecCCccceeccCcc-----eecceEEechhHHH
Confidence            67889999999999999  99999999999877678889999875     99999999999876

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.66  E-value=2e-08  Score=63.03  Aligned_cols=60  Identities=22%  Similarity=0.220  Sum_probs=46.5

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCCC------cccc----cCC-CCCCCceEeeeeeEEeeccC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------DETH----EKQ-PGYDNMWLHSMVRTKKCSRM  258 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~------~~~~----~~~-~~~~~~~~~~~v~~~~~~~~  258 (259)
                      +++|||+|++|+|+|..|.+.+.+|++++|++.      ++..    +.+ ....++++++.+++++....
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~   71 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGD   71 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC
Confidence            589999999999999999999999999999992      2222    222 22246666799999887654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.64  E-value=7.4e-07  Score=77.41  Aligned_cols=105  Identities=21%  Similarity=0.294  Sum_probs=75.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+|+|||+|+.|+-+|..|.+.|.+|+++|+.+.+..                                           
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~-------------------------------------------  349 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP-------------------------------------------  349 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc-------------------------------------------
Confidence            5799999999999999999999999999999764310                                           


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHH-HHhCCceeEEeceeEEEEEEeCCC-cEEEEEEe---cC--C------c
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFA-REFGVDQVVRLHTEVLNARLVESN-KWKVKSRK---KD--D------V  149 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~---g~--~------~  149 (259)
                        .             +  ..++..++.+.. .+.+++  ++.++.|.++...++. .+.+...+   ++  +      .
T Consensus       350 --~-------------~--d~eis~~l~~~ll~~~GV~--I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~  410 (659)
T PTZ00153        350 --L-------------L--DADVAKYFERVFLKSKPVR--VHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMND  410 (659)
T ss_pred             --c-------------C--CHHHHHHHHHHHhhcCCcE--EEcCCEEEEEEecCCceEEEEEEecccccccccccccccc
Confidence              0             0  055666666654 567899  9999999999865422 24444332   11  0      1


Q ss_pred             eEEEEeCEEEEccCCCCCCccC
Q 024975          150 VEEETFDAVVVCNGHFSVPRLA  171 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~~~~~  171 (259)
                      ...+.+|.|++|+|  ..|+..
T Consensus       411 ~~~i~aD~VlvAtG--r~Pnt~  430 (659)
T PTZ00153        411 IKETYVDSCLVATG--RKPNTN  430 (659)
T ss_pred             ceEEEcCEEEEEEC--cccCCc
Confidence            13699999999999  566654

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=4.6e-08  Score=80.20  Aligned_cols=43  Identities=37%  Similarity=0.535  Sum_probs=39.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS   45 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~   45 (259)
                      ++|+|+|||.|||+||+.|+++|++|+|+|.++++||.+..+.
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~   43 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWR   43 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeee
Confidence            4799999999999999999999999999999999998865543

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.63  E-value=4.2e-08  Score=83.29  Aligned_cols=39  Identities=41%  Similarity=0.555  Sum_probs=36.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCcee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW   41 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~   41 (259)
                      .||+|||||++||++|..|+++|++|+|+|+++.+||.+
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~   40 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCA   40 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence            699999999999999999999999999999999998764

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR02730 carot_isom carotene isomerase

Probab=98.62  E-value=5.3e-08  Score=82.67  Aligned_cols=58  Identities=14%  Similarity=0.119  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      ..+.+.|.+.+++.|.+  ++++++|++|...+++.+.|.+.++.    .+.+|.||+|+|.+.
T Consensus       229 ~~l~~~L~~~~~~~G~~--i~~~~~V~~I~~~~~~~~gv~~~~g~----~~~ad~vV~a~~~~~  286 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQ--IRYRARVTKIILENGKAVGVKLADGE----KIYAKRIVSNATRWD  286 (493)
T ss_pred             HHHHHHHHHHHHHCCCE--EEeCCeeeEEEecCCcEEEEEeCCCC----EEEcCEEEECCChHH
Confidence            45667778888888999  99999999998775456777777654    789999999998643

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.60  E-value=3.2e-07  Score=73.72  Aligned_cols=45  Identities=22%  Similarity=0.255  Sum_probs=33.1

Q ss_pred             CCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEEccC
Q 024975          117 GVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNG  163 (259)
Q Consensus       117 ~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIlAtG  163 (259)
                      .+.  ++.+++|++++..+++.|.+.+.+.. ++...+.+|.||+|||
T Consensus       293 ~~~--l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATG  338 (341)
T PF13434_consen  293 RLR--LLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATG  338 (341)
T ss_dssp             -SE--EETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---
T ss_pred             CeE--EeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCC
Confidence            455  78899999999987558999999844 6778899999999999

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.59  E-value=7.6e-08  Score=73.99  Aligned_cols=42  Identities=26%  Similarity=0.458  Sum_probs=39.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      |+|++|||||.+|+.+|..|+++|.+|+|+||.+.+||.|..
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYd   42 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYD   42 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccc
Confidence            589999999999999999999999999999999999999754

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.59  E-value=6.3e-08  Score=79.30  Aligned_cols=161  Identities=20%  Similarity=0.161  Sum_probs=91.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCC---------------------------------
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE---------------------------------   48 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~---------------------------------   48 (259)
                      .+||+|||||..|..||+-..-+|+++.++|++++..|+........                                 
T Consensus        67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER~~ll  146 (680)
T KOG0042|consen   67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNERANLL  146 (680)
T ss_pred             cccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence            37999999999999999999999999999999998776654431110                                 


Q ss_pred             -CCCCCCCCCCCCccccccccceeccccccceecCC----------------------CCCccCCCCCCCCCCCC--CH-
Q 024975           49 -SDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY----------------------PFVARNYEGSVDLRRYP--GH-  102 (259)
Q Consensus        49 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~--~~-  102 (259)
                       ..|+-+.+-+..  -..|.|++..-.+..+.+-++                      |.......  ...-.|-  +. 
T Consensus       147 e~APhLs~~lPIm--lPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L--~Ga~VYyDGQ~n  222 (680)
T KOG0042|consen  147 EIAPHLSQPLPIM--LPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNL--KGAMVYYDGQHN  222 (680)
T ss_pred             hcCccccCCccee--eehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccccCc--eeEEEEecCCCc
Confidence             122222222111  123444443333222222111                      11110000  0000000  00 


Q ss_pred             -HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcE-EEEEEec-CCceEEEEeCEEEEccCCCCCC
Q 024975          103 -EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKK-DDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       103 -~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~g-~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                       ..+.-.+.-.+.+.|..  +....+|.++.++.++.. .+...+. +|+...+.++.||-|||.++..
T Consensus       223 DaRmnl~vAlTA~r~GA~--v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDs  289 (680)
T KOG0042|consen  223 DARMNLAVALTAARNGAT--VLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDS  289 (680)
T ss_pred             hHHHHHHHHHHHHhcchh--hhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHH
Confidence             22333334444566887  788888888887764422 3444442 3777899999999999987643

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.59  E-value=6.1e-08  Score=82.54  Aligned_cols=56  Identities=20%  Similarity=0.246  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGH  164 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~  164 (259)
                      ..+.+.|.+.+++.|.+  +++++.|++|...+++.+.|.+.++.    .+.+|.||+|++.
T Consensus       219 ~~l~~al~~~~~~~G~~--i~~~~~V~~i~~~~~~~~~V~~~~g~----~~~ad~VI~a~~~  274 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGE--LRLNAEVIRIETEGGRATAVHLADGE----RLDADAVVSNADL  274 (502)
T ss_pred             HHHHHHHHHHHHHCCCE--EEECCeEEEEEeeCCEEEEEEECCCC----EEECCEEEECCcH
Confidence            34556667777778988  99999999998775344677777654    7899999999884

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PLN02568 polyamine oxidase

Probab=98.58  E-value=9.8e-08  Score=81.26  Aligned_cols=43  Identities=30%  Similarity=0.546  Sum_probs=38.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC-----CcEEEEeeCCCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG-----HTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g-----~~v~v~e~~~~~gg~~~~~   44 (259)
                      .+||+|||||++||++|..|.+.|     .+|+|+|+.+.+||.+...
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~   52 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTS   52 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEE
Confidence            368999999999999999999887     8999999999999886543

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.56  E-value=1.4e-06  Score=66.25  Aligned_cols=39  Identities=21%  Similarity=0.480  Sum_probs=33.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC------CcEEEEeeCCCcCce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG------HTVVVYEKGEQVGGS   40 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g------~~v~v~e~~~~~gg~   40 (259)
                      .++|+|||||+.|+++|++|.+.+      ++|+|||+..-.||.
T Consensus        10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga   54 (380)
T KOG2852|consen   10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA   54 (380)
T ss_pred             ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence            368999999999999999999986      799999997655533

>PRK10262 thioredoxin reductase; Provisional

Probab=98.55  E-value=2.2e-06  Score=68.81  Aligned_cols=102  Identities=16%  Similarity=0.174  Sum_probs=73.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      ++++|||+|..|+-+|..|.+.+.+|+++++.+.+.                                            
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~--------------------------------------------  182 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--------------------------------------------  182 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC--------------------------------------------
Confidence            589999999999999999999999999999964210                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC--CceEEEEeCEEEE
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD--DVVEEETFDAVVV  160 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~--~~~~~~~ad~VIl  160 (259)
                                        ....+...+.+.+.+.+++  ++.++.++++...+.+...+.+.++.  +....+.+|.||+
T Consensus       183 ------------------~~~~~~~~~~~~l~~~gV~--i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~  242 (321)
T PRK10262        183 ------------------AEKILIKRLMDKVENGNII--LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFV  242 (321)
T ss_pred             ------------------CCHHHHHHHHhhccCCCeE--EEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEE
Confidence                              0033445566666677888  88999999997643222235554432  2335799999999


Q ss_pred             ccCCCCCCcc
Q 024975          161 CNGHFSVPRL  170 (259)
Q Consensus       161 AtG~~s~~~~  170 (259)
                      |+|  ..|+.
T Consensus       243 a~G--~~p~~  250 (321)
T PRK10262        243 AIG--HSPNT  250 (321)
T ss_pred             EeC--CccCh
Confidence            999  45543

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.51  E-value=2.3e-06  Score=73.04  Aligned_cols=98  Identities=21%  Similarity=0.253  Sum_probs=70.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+|+|||||+.|+-+|..|++.+.+|+++++.+.+.                                            
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~--------------------------------------------  388 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK--------------------------------------------  388 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC--------------------------------------------
Confidence            589999999999999999999999999998754220                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEE
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV  160 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIl  160 (259)
                                          .  ...+.+.+.+ .|++  +++++.++++...++....|.+.++. ++...+.+|.|++
T Consensus       389 --------------------~--~~~l~~~l~~~~gV~--i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~  444 (515)
T TIGR03140       389 --------------------A--DKVLQDKLKSLPNVD--ILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFV  444 (515)
T ss_pred             --------------------h--hHHHHHHHhcCCCCE--EEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEE
Confidence                                0  0123344443 5888  99999999997653232346665542 4445799999999


Q ss_pred             ccCCCCCCcc
Q 024975          161 CNGHFSVPRL  170 (259)
Q Consensus       161 AtG~~s~~~~  170 (259)
                      |+|  ..|+.
T Consensus       445 a~G--~~Pn~  452 (515)
T TIGR03140       445 QIG--LVPNT  452 (515)
T ss_pred             EeC--CcCCc
Confidence            999  55554

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.51  E-value=1.3e-07  Score=79.48  Aligned_cols=40  Identities=40%  Similarity=0.573  Sum_probs=36.9

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      +|+|||||++||++|+.|.++|++|+|+|+.+.+||.+..
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s   40 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAA   40 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce
Confidence            5899999999999999999999999999999999986543

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.50  E-value=2.6e-07  Score=74.82  Aligned_cols=42  Identities=33%  Similarity=0.622  Sum_probs=37.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcC-CcEEEEeeCCCcCceeeeC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~~~gg~~~~~   44 (259)
                      .+|||||||.+||+||.+|.+.| .+++|+|..+++||+....
T Consensus        22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti   64 (498)
T KOG0685|consen   22 AKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTI   64 (498)
T ss_pred             ceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeE
Confidence            57999999999999999999876 4999999999999886543

>PLN02676 polyamine oxidase

Probab=98.47  E-value=2.2e-07  Score=78.44  Aligned_cols=42  Identities=24%  Similarity=0.493  Sum_probs=38.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~~gg~~~~   43 (259)
                      ++||+|||||++||++|.+|.+.|. +|+|+|+.+.+||.+..
T Consensus        26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~   68 (487)
T PLN02676         26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRK   68 (487)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCccee
Confidence            4799999999999999999999998 69999999999987543

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.46  E-value=3.8e-06  Score=66.62  Aligned_cols=93  Identities=22%  Similarity=0.257  Sum_probs=66.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+|+|||+|+.|+-+|..|.+.+.+|+++++.+.+.                                            
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~--------------------------------------------  177 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR--------------------------------------------  177 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC--------------------------------------------
Confidence            589999999999999999999999999999854210                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEE
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV  160 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIl  160 (259)
                          .              ..    .+.+.+.+. +++  ++.++++.++...+ ....+.+.+. ++....+.+|.||+
T Consensus       178 ----~--------------~~----~~~~~l~~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~  232 (300)
T TIGR01292       178 ----A--------------EK----ILLDRLRKNPNIE--FLWNSTVKEIVGDN-KVEGVKIKNTVTGEEEELKVDGVFI  232 (300)
T ss_pred             ----c--------------CH----HHHHHHHhCCCeE--EEeccEEEEEEccC-cEEEEEEEecCCCceEEEEccEEEE
Confidence                0              02    223334455 888  88899999997643 3334444432 23346799999999


Q ss_pred             ccCC
Q 024975          161 CNGH  164 (259)
Q Consensus       161 AtG~  164 (259)
                      |+|.
T Consensus       233 a~G~  236 (300)
T TIGR01292       233 AIGH  236 (300)
T ss_pred             eeCC
Confidence            9993

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR01810 betA choline dehydrogenase

Probab=98.44  E-value=2.8e-06  Score=72.94  Aligned_cols=68  Identities=21%  Similarity=0.288  Sum_probs=46.3

Q ss_pred             HHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCccCCCCCC
Q 024975          107 RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGI  176 (259)
Q Consensus       107 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~  176 (259)
                      .|+.....+.+++  ++.+++|++|..+.+....|.+.++......+.++.||+|.|+...|++....|+
T Consensus       198 ~~l~~a~~r~nl~--i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGI  265 (532)
T TIGR01810       198 AYLHPAMKRPNLE--VQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGI  265 (532)
T ss_pred             HHhhhhccCCCeE--EEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCC
Confidence            4555444455787  9999999999986533445666543322334689999999998777877655554

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.43  E-value=3.4e-07  Score=77.16  Aligned_cols=40  Identities=43%  Similarity=0.652  Sum_probs=36.9

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      +|+|||||++|+++|+.|.+.|++|+|+|+++.+||.+..
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   40 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS   40 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence            5899999999999999999999999999999999986544

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02529 lysine-specific histone demethylase 1

Probab=98.41  E-value=4.3e-07  Score=79.41  Aligned_cols=43  Identities=37%  Similarity=0.502  Sum_probs=39.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~   44 (259)
                      .++|+|||||++|++||..|.++|++|+|+|+.+.+||.+...
T Consensus       160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~  202 (738)
T PLN02529        160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQ  202 (738)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeee
Confidence            4789999999999999999999999999999999998876543

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.39  E-value=6.2e-06  Score=70.52  Aligned_cols=98  Identities=20%  Similarity=0.232  Sum_probs=70.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      ++|+|||+|..|+-+|..|...+.+|+++++.+.+.                                            
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~--------------------------------------------  387 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK--------------------------------------------  387 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc--------------------------------------------
Confidence            589999999999999999999999999998864220                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEE
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV  160 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIl  160 (259)
                       .                  .   ..+.+.+.+ .+++  +++++.++++...++....+.+.+.. ++...+.+|.|++
T Consensus       388 -~------------------~---~~l~~~l~~~~gI~--i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~  443 (517)
T PRK15317        388 -A------------------D---QVLQDKLRSLPNVT--IITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFV  443 (517)
T ss_pred             -c------------------c---HHHHHHHhcCCCcE--EEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEE
Confidence             0                  0   123333333 4888  99999999998654222335555432 4445799999999


Q ss_pred             ccCCCCCCcc
Q 024975          161 CNGHFSVPRL  170 (259)
Q Consensus       161 AtG~~s~~~~  170 (259)
                      |+|  ..|+.
T Consensus       444 ~~G--~~p~~  451 (517)
T PRK15317        444 QIG--LVPNT  451 (517)
T ss_pred             eEC--CccCc
Confidence            999  45543

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=98.38  E-value=5.8e-06  Score=67.22  Aligned_cols=105  Identities=21%  Similarity=0.242  Sum_probs=85.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      ..|+++|+|..|+-+|..|...+.+|+++++.+.+                                             
T Consensus       214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~---------------------------------------------  248 (478)
T KOG1336|consen  214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL---------------------------------------------  248 (478)
T ss_pred             ceEEEECchHHHHHHHHHHHhcCceEEEEccCccc---------------------------------------------
Confidence            46999999999999999999999999999997522                                             


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC-cEEEEEEecCCceEEEEeCEEEEc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +          ...|.  ..+.+.++.+.++.+++  +..++.+.+++.++++ ...|.+.++.    .+.+|.||+.
T Consensus       249 --~----------~~lf~--~~i~~~~~~y~e~kgVk--~~~~t~~s~l~~~~~Gev~~V~l~dg~----~l~adlvv~G  308 (478)
T KOG1336|consen  249 --L----------PRLFG--PSIGQFYEDYYENKGVK--FYLGTVVSSLEGNSDGEVSEVKLKDGK----TLEADLVVVG  308 (478)
T ss_pred             --h----------hhhhh--HHHHHHHHHHHHhcCeE--EEEecceeecccCCCCcEEEEEeccCC----EeccCeEEEe
Confidence              0          01121  77888899999999999  9999999999987743 4557788876    8999999999


Q ss_pred             cCCCCCCccCCCC
Q 024975          162 NGHFSVPRLAQVP  174 (259)
Q Consensus       162 tG~~s~~~~~~~~  174 (259)
                      +|  ..|+.+.+.
T Consensus       309 iG--~~p~t~~~~  319 (478)
T KOG1336|consen  309 IG--IKPNTSFLE  319 (478)
T ss_pred             ec--ccccccccc
Confidence            99  667665544

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.36  E-value=4.5e-07  Score=75.21  Aligned_cols=42  Identities=21%  Similarity=0.266  Sum_probs=39.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      .+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.+..
T Consensus         4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as   45 (443)
T PTZ00363          4 TYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS   45 (443)
T ss_pred             cceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence            489999999999999999999999999999999999988763

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=98.36  E-value=1.2e-06  Score=69.99  Aligned_cols=104  Identities=18%  Similarity=0.163  Sum_probs=65.5

Q ss_pred             HhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCccCC-CCCCC-CCCCceEEcc---cC
Q 024975          115 EFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQ-VPGID-SWPGKQMHSH---NY  189 (259)
Q Consensus       115 ~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~-~~g~~-~~~~~~~~~~---~~  189 (259)
                      .-|+-  +..+.+|+.|...+   -.|.+++|.    +|.||.++||||  ..|+..+ +.... .....+....   +|
T Consensus       269 nGGvA--vl~G~kvvkid~~d---~~V~LnDG~----~I~YdkcLIATG--~~Pk~l~~~~~A~~evk~kit~fr~p~DF  337 (659)
T KOG1346|consen  269 NGGVA--VLRGRKVVKIDEED---KKVILNDGT----TIGYDKCLIATG--VRPKKLQVFEEASEEVKQKITYFRYPADF  337 (659)
T ss_pred             cCceE--EEeccceEEeeccc---CeEEecCCc----EeehhheeeecC--cCcccchhhhhcCHHhhhheeEEecchHH
Confidence            34666  88888999988654   467888876    899999999999  6666443 22111 1111222111   11


Q ss_pred             CCCC--CCCCCeEEEEccCcCHHHHHHHHhcc----cCeEEEEecC
Q 024975          190 RIPN--PFQDQVVILIGHYASGLDIKRDLAGF----AKEVHIASRS  229 (259)
Q Consensus       190 ~~~~--~~~~~~v~viG~G~~a~e~a~~l~~~----~~~v~~~~r~  229 (259)
                      ....  ....++|.|||+|+.|-|++..|.+.    +.+|+-+-..
T Consensus       338 ~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~E  383 (659)
T KOG1346|consen  338 KRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEE  383 (659)
T ss_pred             HHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecc
Confidence            1110  11347899999999999999999654    4455544333

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.36  E-value=5.6e-07  Score=79.20  Aligned_cols=42  Identities=43%  Similarity=0.562  Sum_probs=38.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      ..+|+|||||++|+++|+.|.+.|++|+|+|+.+.+||....
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t  279 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKT  279 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccc
Confidence            478999999999999999999999999999999999887543

>PLN02487 zeta-carotene desaturase

Probab=98.36  E-value=7.1e-07  Score=76.27  Aligned_cols=41  Identities=44%  Similarity=0.631  Sum_probs=37.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~   42 (259)
                      +++|+|||+|++|+++|+.|.++|++|+|+|+.+.+||.+.
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~  115 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG  115 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence            35999999999999999999999999999999999987653

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.34  E-value=1.4e-05  Score=62.36  Aligned_cols=39  Identities=38%  Similarity=0.660  Sum_probs=34.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC--CcCce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--QVGGS   40 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~--~~gg~   40 (259)
                      .+|++|||+|.+||.+|.+|+.+|.+|+|+|+..  .+||.
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ   45 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ   45 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence            4799999999999999999999999999999964  35554

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.32  E-value=8.2e-06  Score=63.66  Aligned_cols=36  Identities=31%  Similarity=0.451  Sum_probs=31.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc----CCcEEEEeeCCCc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQV   37 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~----g~~v~v~e~~~~~   37 (259)
                      ..||+|||||-.|.+.|+.|.++    |++|+|+|+++..
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY  125 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence            36899999999999999999874    7899999998643

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.32  E-value=1e-05  Score=66.21  Aligned_cols=90  Identities=24%  Similarity=0.382  Sum_probs=65.5

Q ss_pred             CeEEEECCChHHHHHHHHHHHc----C--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccc
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE----G--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~----g--~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (259)
                      .+|+|||+|+.|+.+|..|.+.    |  .+|+|+ ..+.+.                                      
T Consensus       146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l--------------------------------------  186 (364)
T TIGR03169       146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLL--------------------------------------  186 (364)
T ss_pred             ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccc--------------------------------------
Confidence            4799999999999999999853    4  478888 322110                                      


Q ss_pred             cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (259)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad  156 (259)
                             +             .++  ..+...+.+.+.+.+++  ++.++++.++..   +  .+.+.++.    .+.+|
T Consensus       187 -------~-------------~~~--~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~---~--~v~~~~g~----~i~~D  233 (364)
T TIGR03169       187 -------P-------------GFP--AKVRRLVLRLLARRGIE--VHEGAPVTRGPD---G--ALILADGR----TLPAD  233 (364)
T ss_pred             -------c-------------cCC--HHHHHHHHHHHHHCCCE--EEeCCeeEEEcC---C--eEEeCCCC----EEecC
Confidence                   0             001  55667778888888999  999999988752   2  45555544    79999


Q ss_pred             EEEEccCC
Q 024975          157 AVVVCNGH  164 (259)
Q Consensus       157 ~VIlAtG~  164 (259)
                      .||+|+|.
T Consensus       234 ~vi~a~G~  241 (364)
T TIGR03169       234 AILWATGA  241 (364)
T ss_pred             EEEEccCC
Confidence            99999994

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.29  E-value=1.1e-05  Score=65.53  Aligned_cols=32  Identities=25%  Similarity=0.337  Sum_probs=29.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCc-EEEEeeC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHT-VVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~-v~v~e~~   34 (259)
                      .+++|||+|+.|+-+|..|.+.|.+ |+|+++.
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~  205 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR  205 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence            5799999999999999999999987 9999875

>PLN02612 phytoene desaturase

Probab=98.28  E-value=1.2e-06  Score=75.35  Aligned_cols=41  Identities=32%  Similarity=0.477  Sum_probs=37.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~   42 (259)
                      .++|+|||||++|+++|++|.++|++++|+|+.+.+||...
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~  133 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA  133 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence            46899999999999999999999999999999988887653

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.27  E-value=8.8e-05  Score=62.35  Aligned_cols=33  Identities=27%  Similarity=0.380  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++|+|||+|..|+-+|..|.+.|.+|+++++..
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            589999999999999999999999999998863

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=98.26  E-value=3.5e-06  Score=64.33  Aligned_cols=48  Identities=25%  Similarity=0.335  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975          102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ...+..||...+.+.|++   ..+.+|.+++...                .-.||.||-|||.++..
T Consensus       150 ~~~ylpyl~k~l~e~Gve---f~~r~v~~l~E~~----------------~~~~DVivNCtGL~a~~  197 (342)
T KOG3923|consen  150 GPKYLPYLKKRLTENGVE---FVQRRVESLEEVA----------------RPEYDVIVNCTGLGAGK  197 (342)
T ss_pred             chhhhHHHHHHHHhcCcE---EEEeeeccHHHhc----------------cCCCcEEEECCcccccc
Confidence            378899999999999987   4456777776432                24689999999987644

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.25  E-value=1e-06  Score=69.92  Aligned_cols=71  Identities=17%  Similarity=0.168  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHhCCceeEEeceeEEEEEEe--CCCcEEEEEEecCCc--eEEEEeCEEEEccCCCCCCccCCCCCC
Q 024975          104 EVLRYLQNFAREFGVDQVVRLHTEVLNARLV--ESNKWKVKSRKKDDV--VEEETFDAVVVCNGHFSVPRLAQVPGI  176 (259)
Q Consensus       104 ~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~--~~~~~~v~~~~g~~~--~~~~~ad~VIlAtG~~s~~~~~~~~g~  176 (259)
                      ....||.....+.+++  ++.+++|++|...  ......|.+.+.++.  ...+.++.||+|.|+...|+++...|+
T Consensus       194 ~~~~~L~~a~~~~n~~--l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi  268 (296)
T PF00732_consen  194 AATTYLPPALKRPNLT--LLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI  268 (296)
T ss_dssp             HHHHHHHHHTTTTTEE--EEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred             hhhcccchhhccCCcc--EEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence            3455677666555888  9999999999775  324456777776644  567788999999998777777655554

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=98.24  E-value=1.9e-06  Score=68.96  Aligned_cols=42  Identities=36%  Similarity=0.476  Sum_probs=36.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~~~gg~~~~   43 (259)
                      .++|+|+|||++||++|++|++++.  .++|+|+++++||-...
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS   54 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS   54 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence            4789999999999999999999865  46779999999886655

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.21  E-value=1.8e-06  Score=73.19  Aligned_cols=39  Identities=21%  Similarity=0.186  Sum_probs=36.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCcee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW   41 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~   41 (259)
                      |||+|||+||+|+.+|..|.+.|.+|+++|++...|+.|
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~   39 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK   39 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence            699999999999999999999999999999998887544

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=98.21  E-value=4.3e-06  Score=67.05  Aligned_cols=100  Identities=22%  Similarity=0.357  Sum_probs=73.7

Q ss_pred             eEEEECCChHHHHHHHHHHHc--------------CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccc
Q 024975            4 HVAVIGAGAAGLVVGHELLRE--------------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSL   69 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~--------------g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (259)
                      +++||||||.|.-+|.+|...              .++|+++|..+.+                                
T Consensus       220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i--------------------------------  267 (491)
T KOG2495|consen  220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI--------------------------------  267 (491)
T ss_pred             EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH--------------------------------
Confidence            689999999999999999762              3588898887533                                


Q ss_pred             eeccccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           70 RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                                   .++.               ...+..|.++...+.+++  +..++.|..+...     .+..+.+++.
T Consensus       268 -------------L~mF---------------dkrl~~yae~~f~~~~I~--~~~~t~Vk~V~~~-----~I~~~~~~g~  312 (491)
T KOG2495|consen  268 -------------LNMF---------------DKRLVEYAENQFVRDGID--LDTGTMVKKVTEK-----TIHAKTKDGE  312 (491)
T ss_pred             -------------HHHH---------------HHHHHHHHHHHhhhccce--eecccEEEeecCc-----EEEEEcCCCc
Confidence                         0000               066777777777788998  9999888887632     3455544566


Q ss_pred             eEEEEeCEEEEccCCCCCCcc
Q 024975          150 VEEETFDAVVVCNGHFSVPRL  170 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~~~~  170 (259)
                      .+.+.+--+|.|||....|..
T Consensus       313 ~~~iPYG~lVWatG~~~rp~~  333 (491)
T KOG2495|consen  313 IEEIPYGLLVWATGNGPRPVI  333 (491)
T ss_pred             eeeecceEEEecCCCCCchhh
Confidence            678999999999996555544

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.21  E-value=1.9e-06  Score=71.07  Aligned_cols=35  Identities=37%  Similarity=0.503  Sum_probs=33.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |++||+|||+|++|+++|..|.+.|.+|+|+|++.
T Consensus         1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            68999999999999999999999999999999863

>PLN03000 amine oxidase

Probab=98.18  E-value=2.4e-06  Score=75.53  Aligned_cols=43  Identities=33%  Similarity=0.516  Sum_probs=39.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~   44 (259)
                      .++|+|||||++|+.+|..|.+.|++|+|+|+.+.+||.+...
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~  226 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTK  226 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCccee
Confidence            3789999999999999999999999999999999999887544

>PLN02976 amine oxidase

Probab=98.16  E-value=3.2e-06  Score=77.81  Aligned_cols=43  Identities=35%  Similarity=0.604  Sum_probs=39.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~   44 (259)
                      .++|+|||||++|+++|..|.+.|++|+|||+.+.+||.+...
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~  735 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD  735 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeec
Confidence            4789999999999999999999999999999999999887654

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=98.12  E-value=1.4e-05  Score=65.01  Aligned_cols=33  Identities=27%  Similarity=0.357  Sum_probs=30.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      .|||+|||||.||+-+|.+.++.|.+.+++..+
T Consensus        28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            489999999999999999999999999998876

>PRK12831 putative oxidoreductase; Provisional

Probab=98.11  E-value=7.3e-05  Score=63.05  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=30.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      ++|+|||+|..|+-+|..|.+.|.+|+++++.
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~  313 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRR  313 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence            58999999999999999999999999999875

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.11  E-value=8e-05  Score=62.83  Aligned_cols=33  Identities=24%  Similarity=0.397  Sum_probs=30.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      .+|+|||+|..|+-+|..|.+.|. +|+++++.+
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            589999999999999999999988 899998853

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=98.09  E-value=3.9e-06  Score=60.97  Aligned_cols=40  Identities=28%  Similarity=0.442  Sum_probs=34.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceee
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~   42 (259)
                      -||+|||+|-+||++|+.+.++  ..+|.|+|.+-.+||...
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW  118 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW  118 (328)
T ss_pred             cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence            5899999999999999999864  679999999988876544

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.09  E-value=5.1e-06  Score=64.44  Aligned_cols=36  Identities=36%  Similarity=0.617  Sum_probs=33.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      |.+||+|||||.+|++|+.+|.++|.++.|+-++..
T Consensus         1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs   36 (421)
T COG3075           1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS   36 (421)
T ss_pred             CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence            789999999999999999999999999999988643

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.08  E-value=5.7e-05  Score=65.20  Aligned_cols=33  Identities=30%  Similarity=0.222  Sum_probs=30.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|+|||+|+.|+-+|..|.+.|.+|+++++.+
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~  176 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP  176 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence            579999999999999999999999999999864

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=98.05  E-value=3.3e-05  Score=62.52  Aligned_cols=40  Identities=35%  Similarity=0.514  Sum_probs=36.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCcee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW   41 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~   41 (259)
                      .||++|||+|..||.+|.+|.+.|.+|+++|+....||..
T Consensus        14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaa   53 (561)
T KOG4254|consen   14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAA   53 (561)
T ss_pred             ccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcce
Confidence            5899999999999999999999999999999986666553

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=98.01  E-value=3.5e-05  Score=61.69  Aligned_cols=34  Identities=24%  Similarity=0.501  Sum_probs=30.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc----CCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~----g~~v~v~e~~~   35 (259)
                      .+||+|+||||.|+++|..|...    ..++.++|..+
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~   73 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD   73 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence            48999999999999999999864    46999999984

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.01  E-value=0.00025  Score=58.67  Aligned_cols=40  Identities=28%  Similarity=0.493  Sum_probs=34.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHc----CCcEEEEeeCCCcCceee
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~----g~~v~v~e~~~~~gg~~~   42 (259)
                      +++=|||+|+++|++|.+|.+-    |.+|+|+|+.+.+||.+.
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsld   46 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLD   46 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCccc
Confidence            5678999999999999999985    569999999998887653

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.98  E-value=4.4e-05  Score=64.80  Aligned_cols=33  Identities=33%  Similarity=0.495  Sum_probs=30.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      ..+|+|||+|.+|+++|..|.++|.+|+++|+.
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~   48 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDG   48 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            357999999999999999999999999999975

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.94  E-value=0.00024  Score=60.16  Aligned_cols=33  Identities=30%  Similarity=0.479  Sum_probs=27.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ++|+|||+|..|+-+|..+.+.|. +|++++...
T Consensus       282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~  315 (471)
T PRK12810        282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP  315 (471)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence            579999999999999999999886 788766543

>PRK02106 choline dehydrogenase; Validated

Probab=97.94  E-value=1.1e-05  Score=69.81  Aligned_cols=67  Identities=16%  Similarity=0.215  Sum_probs=45.9

Q ss_pred             HHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCccCCCCCC
Q 024975          108 YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGI  176 (259)
Q Consensus       108 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~  176 (259)
                      |+.....+.+++  +..++.|++|..+.+....|.+.+..+....+.++.||+|.|+...|+++...|+
T Consensus       206 ~l~~a~~~~nl~--i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGI  272 (560)
T PRK02106        206 YLDPALKRPNLT--IVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGI  272 (560)
T ss_pred             hhccccCCCCcE--EEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCC
Confidence            444433345677  9999999999887533345665554334455789999999999888887655554

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.93  E-value=0.00018  Score=66.16  Aligned_cols=95  Identities=19%  Similarity=0.205  Sum_probs=67.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+|+|||+|+.|+.+|..|.+.|. .|+|+|..+.+                                            
T Consensus       318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--------------------------------------------  353 (985)
T TIGR01372       318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--------------------------------------------  353 (985)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------------------------------------------
Confidence            589999999999999999999995 57888775311                                            


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                                              ...+.+.+.+.+++  ++.++.++.+...+ ..-.|.+...++....+.+|.|+++
T Consensus       354 ------------------------~~~l~~~L~~~GV~--i~~~~~v~~i~g~~-~v~~V~l~~~~g~~~~i~~D~V~va  406 (985)
T TIGR01372       354 ------------------------SPEARAEARELGIE--VLTGHVVAATEGGK-RVSGVAVARNGGAGQRLEADALAVS  406 (985)
T ss_pred             ------------------------hHHHHHHHHHcCCE--EEcCCeEEEEecCC-cEEEEEEEecCCceEEEECCEEEEc
Confidence                                    11233455677898  99999999887543 3223444421223357999999999


Q ss_pred             cCCCCCCcc
Q 024975          162 NGHFSVPRL  170 (259)
Q Consensus       162 tG~~s~~~~  170 (259)
                      .|  ..|+.
T Consensus       407 ~G--~~Pnt  413 (985)
T TIGR01372       407 GG--WTPVV  413 (985)
T ss_pred             CC--cCchh
Confidence            99  45543

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.92  E-value=0.00054  Score=61.47  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=30.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCc-EEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~-v~v~e~~~   35 (259)
                      ++|+|||+|..|+-+|..|.+.|.+ |+++++.+
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            5899999999999999999999987 99998853

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.89  E-value=0.0012  Score=55.87  Aligned_cols=33  Identities=21%  Similarity=0.388  Sum_probs=29.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ++++|||+|..|+-+|..+.+.|. +|+|+++.+
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~  316 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD  316 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence            679999999999999999999985 799998854

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=97.89  E-value=8.3e-05  Score=57.69  Aligned_cols=34  Identities=29%  Similarity=0.527  Sum_probs=29.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc-C-CcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE-G-HTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~-g-~~v~v~e~~~   35 (259)
                      .++++|||||.+|+++|..+.+. + -+|.|+|+.+
T Consensus        39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e   74 (446)
T KOG3851|consen   39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE   74 (446)
T ss_pred             ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence            46899999999999999999875 3 3899999965

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.83  E-value=0.0016  Score=57.42  Aligned_cols=33  Identities=27%  Similarity=0.477  Sum_probs=29.5

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      .+|+|||+|..|+-+|..|.+.|. +|+|+++.+
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            689999999999999999999986 699998753

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.79  E-value=5e-05  Score=59.08  Aligned_cols=36  Identities=31%  Similarity=0.482  Sum_probs=32.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV   37 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~   37 (259)
                      ...|-|||||.+|.-+|++++++|+.|.++|-.+.-
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k   38 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK   38 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence            356899999999999999999999999999997643

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.77  E-value=3.5e-05  Score=63.12  Aligned_cols=63  Identities=17%  Similarity=0.125  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCC-CCCc
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHF-SVPR  169 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~-s~~~  169 (259)
                      ..+.+.|.+.+++.|.+  ++.+++|+++...+++...+.+.++  +...+.+|.||+|+|.| |...
T Consensus       263 ~RL~~aL~~~~~~~Gg~--il~g~~V~~i~~~~~~v~~V~t~~g--~~~~l~AD~vVLAaGaw~S~gL  326 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGV--MLPGDRVLRAEFEGNRVTRIHTRNH--RDIPLRADHFVLASGSFFSNGL  326 (419)
T ss_pred             HHHHHHHHHHHHHCCCE--EEECcEEEEEEeeCCeEEEEEecCC--ccceEECCEEEEccCCCcCHHH
Confidence            34555567777788988  8889999999987633333554443  12479999999999988 6443

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.77  E-value=0.00016  Score=56.87  Aligned_cols=102  Identities=17%  Similarity=0.206  Sum_probs=78.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +++++|||||..++-+|--++-.|-++.+|-|.+.+-..                                         
T Consensus       189 Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-----------------------------------------  227 (478)
T KOG0405|consen  189 PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-----------------------------------------  227 (478)
T ss_pred             CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-----------------------------------------
Confidence            578999999999999999999999999999887533000                                         


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                       +.                  +.+...+.+..+..+++  ++.++.++.+.+..++...+....+.    ...+|.|+.|
T Consensus       228 -FD------------------~~i~~~v~~~~~~~gin--vh~~s~~~~v~K~~~g~~~~i~~~~~----i~~vd~llwA  282 (478)
T KOG0405|consen  228 -FD------------------EMISDLVTEHLEGRGIN--VHKNSSVTKVIKTDDGLELVITSHGT----IEDVDTLLWA  282 (478)
T ss_pred             -hh------------------HHHHHHHHHHhhhccee--ecccccceeeeecCCCceEEEEeccc----cccccEEEEE
Confidence             00                  56667777777888999  99999999999887555666666653    4559999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       283 iG--R~Pntk  290 (478)
T KOG0405|consen  283 IG--RKPNTK  290 (478)
T ss_pred             ec--CCCCcc
Confidence            99  555543

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.77  E-value=2.6e-05  Score=66.84  Aligned_cols=66  Identities=18%  Similarity=0.221  Sum_probs=46.9

Q ss_pred             HHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCC--ceEEEEeCEEEEccCCCCCCccCCCCC
Q 024975          108 YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD--VVEEETFDAVVVCNGHFSVPRLAQVPG  175 (259)
Q Consensus       108 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~--~~~~~~ad~VIlAtG~~s~~~~~~~~g  175 (259)
                      |+....+.-++.  +..++.|+.|..+.+....+++..+++  ......++.||+|.|....|.+....|
T Consensus       208 ~l~~a~~~~nl~--v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sg  275 (542)
T COG2303         208 YLKPALKRPNLT--LLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSG  275 (542)
T ss_pred             cchhHhcCCceE--EecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcC
Confidence            344444555777  999999999999876666677665442  245568899999999877777655444

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.0009  Score=53.01  Aligned_cols=97  Identities=18%  Similarity=0.159  Sum_probs=70.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+|||+|.+++-.|..|.+.+.+|+++=|.+.+.                                           
T Consensus       143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-------------------------------------------  179 (305)
T COG0492         143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-------------------------------------------  179 (305)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-------------------------------------------
Confidence            4689999999999999999999999999998865320                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                                           .  ...+.+.+.+. ++.  +++++++..+.-++  .-.|.+++..++...+.+|.|++
T Consensus       180 ---------------------a--~~~~~~~l~~~~~i~--~~~~~~i~ei~G~~--v~~v~l~~~~~~~~~~~~~gvf~  232 (305)
T COG0492         180 ---------------------A--EEILVERLKKNVKIE--VLTNTVVKEILGDD--VEGVVLKNVKGEEKELPVDGVFI  232 (305)
T ss_pred             ---------------------c--CHHHHHHHHhcCCeE--EEeCCceeEEecCc--cceEEEEecCCceEEEEeceEEE
Confidence                                 0  12334444433 677  89999999987542  23466665435557899999999


Q ss_pred             ccCCCCCCcc
Q 024975          161 CNGHFSVPRL  170 (259)
Q Consensus       161 AtG~~s~~~~  170 (259)
                      +.|  ..|+.
T Consensus       233 ~iG--~~p~~  240 (305)
T COG0492         233 AIG--HLPNT  240 (305)
T ss_pred             ecC--CCCch
Confidence            999  45553

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.71  E-value=0.0024  Score=51.55  Aligned_cols=83  Identities=14%  Similarity=0.219  Sum_probs=53.3

Q ss_pred             EEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEccCCCCCCccCC-CCCCC-----CCCCceEEcccCCCCCC
Q 024975          122 VRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVPRLAQ-VPGID-----SWPGKQMHSHNYRIPNP  194 (259)
Q Consensus       122 v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s~~~~~~-~~g~~-----~~~~~~~~~~~~~~~~~  194 (259)
                      +...++|.+++...++.+.+.+... +++..++++|.||+|||  ....+|. +.++.     ...+......+|.....
T Consensus       295 l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATG--Y~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~  372 (436)
T COG3486         295 LLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATG--YRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWD  372 (436)
T ss_pred             eccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecc--cccCCchhhhhHHHhhcccccCCeEecCceeeecC
Confidence            7778999999987655588888765 47778899999999999  5555554 33333     12333344444443322


Q ss_pred             -CCCCeEEEEccC
Q 024975          195 -FQDQVVILIGHY  206 (259)
Q Consensus       195 -~~~~~v~viG~G  206 (259)
                       ....++.|.|+.
T Consensus       373 ~~~~~~ifvqn~e  385 (436)
T COG3486         373 GPGKGRIFVQNAE  385 (436)
T ss_pred             CCCcceEEEeccc
Confidence             222467777763

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=97.69  E-value=0.00018  Score=57.97  Aligned_cols=59  Identities=29%  Similarity=0.273  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCcc
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRL  170 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~  170 (259)
                      +-+.++..+...+.|++  ++-+..|.++.+.. ....+.+++|.    .+..|.||+|+|  -.|+.
T Consensus       393 eyls~wt~ekir~~GV~--V~pna~v~sv~~~~-~nl~lkL~dG~----~l~tD~vVvavG--~ePN~  451 (659)
T KOG1346|consen  393 EYLSQWTIEKIRKGGVD--VRPNAKVESVRKCC-KNLVLKLSDGS----ELRTDLVVVAVG--EEPNS  451 (659)
T ss_pred             HHHHHHHHHHHHhcCce--eccchhhhhhhhhc-cceEEEecCCC----eeeeeeEEEEec--CCCch
Confidence            45556667777888999  99999999998876 67889999987    899999999999  56664

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.68  E-value=0.0058  Score=54.10  Aligned_cols=33  Identities=24%  Similarity=0.379  Sum_probs=29.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ++|+|||+|..|+-+|..+.+.|. +|+++.+.+
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~  502 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD  502 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence            579999999999999999999986 699888753

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.65  E-value=0.0013  Score=60.16  Aligned_cols=32  Identities=25%  Similarity=0.374  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      ++|+|||||..|+-+|..+.+.|.+|+++.+.
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr  479 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR  479 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence            57999999999999999999999999999875

>PLN02785 Protein HOTHEAD

Probab=97.60  E-value=8e-05  Score=64.41  Aligned_cols=34  Identities=26%  Similarity=0.443  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .||++|||+|.+|+.+|.+|.+ +.+|+|+|++..
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            4899999999999999999999 689999999864

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.60  E-value=0.00051  Score=59.51  Aligned_cols=64  Identities=11%  Similarity=-0.087  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC-CcEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975          102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ...+...|.+.+.+.+++  +..++.++++..+++ ....+...+ .++....+.++.||+|||.+..
T Consensus       125 G~~i~~~L~~~~~~~gi~--i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  190 (570)
T PRK05675        125 GHALLHTLYQGNLKNGTT--FLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGR  190 (570)
T ss_pred             HHHHHHHHHHHHhccCCE--EEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCccc
Confidence            456778888877778898  999999999987532 344455432 3455677899999999998663

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.57  E-value=0.00066  Score=57.17  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=30.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .++|+|||+|.+|+-+|..|.+.+.+|+++.+..
T Consensus       204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            3689999999999999999999999999998853

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.49  E-value=0.011  Score=52.27  Aligned_cols=33  Identities=18%  Similarity=0.290  Sum_probs=29.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ++|+|||+|..|+-+|..+.+.|. +|+++.+.+
T Consensus       452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~  485 (639)
T PRK12809        452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD  485 (639)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            579999999999999999999985 799998753

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.44  E-value=0.00038  Score=60.03  Aligned_cols=100  Identities=22%  Similarity=0.224  Sum_probs=74.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      ..-+|||+|.-|+-+|..|.+.|.++.|++-.+.+                                             
T Consensus       146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l---------------------------------------------  180 (793)
T COG1251         146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL---------------------------------------------  180 (793)
T ss_pred             CCcEEEccchhhhHHHHHHHhCCCceEEEeecchH---------------------------------------------
Confidence            34689999999999999999999999998775422                                             


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                        .         ....+   ..=...|+....+.|++  ++.+.....+.... ..-.+.+++|+    .+.||.||.|+
T Consensus       181 --M---------erQLD---~~ag~lL~~~le~~Gi~--~~l~~~t~ei~g~~-~~~~vr~~DG~----~i~ad~VV~a~  239 (793)
T COG1251         181 --M---------ERQLD---RTAGRLLRRKLEDLGIK--VLLEKNTEEIVGED-KVEGVRFADGT----EIPADLVVMAV  239 (793)
T ss_pred             --H---------HHhhh---hHHHHHHHHHHHhhcce--eecccchhhhhcCc-ceeeEeecCCC----cccceeEEEec
Confidence              0         00000   22335667777788998  88877777776533 55668888887    89999999999


Q ss_pred             CCCCCCcc
Q 024975          163 GHFSVPRL  170 (259)
Q Consensus       163 G~~s~~~~  170 (259)
                      |  -.|+.
T Consensus       240 G--IrPn~  245 (793)
T COG1251         240 G--IRPND  245 (793)
T ss_pred             c--ccccc
Confidence            9  55653

>PRK13984 putative oxidoreductase; Provisional

Probab=97.44  E-value=0.0072  Score=53.07  Aligned_cols=29  Identities=28%  Similarity=0.448  Sum_probs=24.5

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC------cEEEE
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH------TVVVY   31 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~------~v~v~   31 (259)
                      .+|+|||||..|+-+|..|.+.+.      +|+++
T Consensus       419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~  453 (604)
T PRK13984        419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVT  453 (604)
T ss_pred             CcEEEECCchHHHHHHHHHHhccccccCceEEEEe
Confidence            589999999999999999998753      56665

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.42  E-value=0.0044  Score=56.57  Aligned_cols=33  Identities=30%  Similarity=0.522  Sum_probs=28.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHc-C-CcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE-G-HTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~-g-~~v~v~e~~~   35 (259)
                      .+|+|||||..|+-+|..+.+. | .+|+++.+..
T Consensus       669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~  703 (1019)
T PRK09853        669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  703 (1019)
T ss_pred             CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence            5899999999999999998887 4 3899998853

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.35  E-value=0.00015  Score=56.30  Aligned_cols=37  Identities=30%  Similarity=0.420  Sum_probs=33.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVG   38 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~g   38 (259)
                      .+|+||||||+.|++.|.+|.-+  +.+|.|+|+...++
T Consensus        48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la   86 (453)
T KOG2665|consen   48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA   86 (453)
T ss_pred             cccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence            48999999999999999998765  88999999987775

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.32  E-value=0.038  Score=47.19  Aligned_cols=33  Identities=33%  Similarity=0.432  Sum_probs=28.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ++|+|||+|..|+-+|..+.+.+. +|+++|..+
T Consensus       284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~  317 (485)
T TIGR01317       284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP  317 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence            589999999999999988888875 799998864

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.30  E-value=0.018  Score=50.09  Aligned_cols=32  Identities=25%  Similarity=0.413  Sum_probs=27.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcC-CcEEEEeeC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~   34 (259)
                      ++|+|||+|..|+-++..+.+.+ .+++|+.+.
T Consensus       268 k~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~  300 (564)
T PRK12771        268 KRVVVIGGGNTAMDAARTARRLGAEEVTIVYRR  300 (564)
T ss_pred             CCEEEECChHHHHHHHHHHHHcCCCEEEEEEec
Confidence            57999999999999999888888 578888775

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.29  E-value=0.015  Score=53.48  Aligned_cols=33  Identities=30%  Similarity=0.498  Sum_probs=28.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHc-CC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE-GH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~-g~-~v~v~e~~~   35 (259)
                      .+|+|||||..|+-+|..+.+. |. +|+++++..
T Consensus       667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            5899999999999999998886 75 799998853

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.25  E-value=0.00043  Score=49.39  Aligned_cols=32  Identities=38%  Similarity=0.627  Sum_probs=30.2

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +|+|||||..|.++|..|.++|.+|.++.+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            68999999999999999999999999999864

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.20  E-value=0.0086  Score=55.44  Aligned_cols=32  Identities=28%  Similarity=0.291  Sum_probs=27.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCc-EEEEeeC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHT-VVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~-v~v~e~~   34 (259)
                      ++|+|||||..|+-+|..+.+.|.+ |+++.+.
T Consensus       572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr  604 (1006)
T PRK12775        572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR  604 (1006)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence            6899999999999999999999974 7777653

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=97.19  E-value=0.0004  Score=59.06  Aligned_cols=36  Identities=28%  Similarity=0.435  Sum_probs=33.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc-CCcEEEEeeCCCc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQV   37 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~-g~~v~v~e~~~~~   37 (259)
                      .||.+|||||-+|+.+|.+|.+. ..+|+|+|++..+
T Consensus        57 ~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   57 SYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             CCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            58999999999999999999996 6899999998665

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.08  E-value=0.0011  Score=54.64  Aligned_cols=62  Identities=18%  Similarity=0.202  Sum_probs=47.0

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC-----cccccC-----------------CCCCCCceE--eeeee
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----DETHEK-----------------QPGYDNMWL--HSMVR  251 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~-----~~~~~~-----------------~~~~~~~~~--~~~v~  251 (259)
                      -.++++|||||.+|+..|.+|++.|-+|+++.+.+.     ..+-+.                 +..-+++.+  +++|+
T Consensus       123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~  202 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVE  202 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeee
Confidence            357899999999999999999999999999999991     111111                 222356665  48899


Q ss_pred             EEeecc
Q 024975          252 TKKCSR  257 (259)
Q Consensus       252 ~~~~~~  257 (259)
                      +++++-
T Consensus       203 ev~G~v  208 (622)
T COG1148         203 EVSGSV  208 (622)
T ss_pred             eecccc
Confidence            888764

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.07  E-value=0.00093  Score=50.61  Aligned_cols=35  Identities=40%  Similarity=0.673  Sum_probs=32.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV   37 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~   37 (259)
                      ++++|||+|..|.++|..|.+.|.+|+++|+++..
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~   35 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER   35 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH
Confidence            47999999999999999999999999999998543

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.03  E-value=0.011  Score=49.29  Aligned_cols=60  Identities=15%  Similarity=0.091  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      .++.+.+.+.+.+.|++  ++.+++|+++...+ +........ +++...+.+|.||+|+|.+.
T Consensus       259 ~rL~~aL~~~l~~~Gv~--I~~g~~V~~v~~~~-~~V~~v~~~-~g~~~~i~AD~VVLAtGrf~  318 (422)
T PRK05329        259 LRLQNALRRAFERLGGR--IMPGDEVLGAEFEG-GRVTAVWTR-NHGDIPLRARHFVLATGSFF  318 (422)
T ss_pred             HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeC-CEEEEEEee-CCceEEEECCEEEEeCCCcc
Confidence            45777788888888998  99999999998775 433332221 23345789999999999653

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=97.02  E-value=0.0024  Score=52.67  Aligned_cols=59  Identities=17%  Similarity=0.208  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCc
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~  169 (259)
                      ..+...|.+.+.+ |++  ++.++.|++++.++ +.|.|.+.++.    .+.+|.||+|+|.|+...
T Consensus       135 ~~~~~~l~~~~~~-G~~--i~~~~~V~~i~~~~-~~~~v~t~~g~----~~~a~~vV~a~G~~~~~l  193 (381)
T TIGR03197       135 PQLCRALLAHAGI-RLT--LHFNTEITSLERDG-EGWQLLDANGE----VIAASVVVLANGAQAGQL  193 (381)
T ss_pred             HHHHHHHHhccCC-CcE--EEeCCEEEEEEEcC-CeEEEEeCCCC----EEEcCEEEEcCCcccccc
Confidence            6777888887777 888  99999999998765 66888877654    589999999999876543

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.99  E-value=0.0013  Score=47.94  Aligned_cols=32  Identities=38%  Similarity=0.610  Sum_probs=28.4

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +|.|||+|..|...|..++..|++|+++|.++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            58999999999999999999999999999975

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=96.99  E-value=0.0081  Score=48.48  Aligned_cols=60  Identities=20%  Similarity=0.287  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCc
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~  169 (259)
                      ..+...+.+.+.+.|++  ++.+++|++++..++..+.|.+.++     .+.||.||+|+|.++...
T Consensus       137 ~~l~~~l~~~~~~~g~~--~~~~~~v~~i~~~~~~~~~v~~~~g-----~~~a~~vV~a~G~~~~~l  196 (337)
T TIGR02352       137 RALLKALEKALEKLGVE--IIEHTEVQHIEIRGEKVTAIVTPSG-----DVQADQVVLAAGAWAGEL  196 (337)
T ss_pred             HHHHHHHHHHHHHcCCE--EEccceEEEEEeeCCEEEEEEcCCC-----EEECCEEEEcCChhhhhc
Confidence            78888888888889999  9999999999986522334555442     689999999999876543

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=96.95  E-value=0.004  Score=51.38  Aligned_cols=33  Identities=30%  Similarity=0.519  Sum_probs=31.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +|++|||+|++|+++|..|.+.|.+|+|+|++.
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            699999999999999999999999999999974

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.93  E-value=0.0012  Score=48.40  Aligned_cols=33  Identities=36%  Similarity=0.560  Sum_probs=27.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++|+|||.|..|+.+|..|++.|++|+.+|.++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~   33 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE   33 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence            479999999999999999999999999999975

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.91  E-value=0.0011  Score=39.80  Aligned_cols=29  Identities=28%  Similarity=0.244  Sum_probs=27.2

Q ss_pred             EEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          202 LIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       202 viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |||+|.+|+-+|..|.+.+.+|+++++++
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~   29 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKND   29 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence            89999999999999999999999999999

...

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.90  E-value=0.0013  Score=55.57  Aligned_cols=34  Identities=29%  Similarity=0.479  Sum_probs=31.2

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV   37 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~   37 (259)
                      +|+|||+|++|+++|..|.++|.+|+++|+....
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            6899999999999999999999999999987543

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.88  E-value=0.0014  Score=43.10  Aligned_cols=36  Identities=17%  Similarity=0.214  Sum_probs=32.2

Q ss_pred             CCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..+++|+|||+|..|..-+..|.+.|.+|+++++..
T Consensus         5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            467999999999999999999999999999999984

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=96.87  E-value=0.00097  Score=55.62  Aligned_cols=48  Identities=23%  Similarity=0.219  Sum_probs=37.4

Q ss_pred             HHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975          112 FAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       112 ~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      .....+.+  ++++++|++|+..+ +.+.+.+.++.    .+.||+||+|+....
T Consensus       218 ~~~~~g~~--i~l~~~V~~I~~~~-~~v~v~~~~g~----~~~ad~VI~a~p~~~  265 (450)
T PF01593_consen  218 AAEELGGE--IRLNTPVTRIERED-GGVTVTTEDGE----TIEADAVISAVPPSV  265 (450)
T ss_dssp             HHHHHGGG--EESSEEEEEEEEES-SEEEEEETTSS----EEEESEEEE-S-HHH
T ss_pred             HHhhcCce--eecCCcceeccccc-cccccccccce----EEecceeeecCchhh
Confidence            33334566  99999999999987 78889998876    899999999997533

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.83  E-value=0.002  Score=52.25  Aligned_cols=35  Identities=29%  Similarity=0.556  Sum_probs=32.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |+.+|+|||+|..|...|..|.+.|.+|+++++.+
T Consensus         1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            67899999999999999999999999999999864

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.77  E-value=0.0019  Score=53.53  Aligned_cols=42  Identities=24%  Similarity=0.519  Sum_probs=33.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      .|||+|+|.|..-..+|..|++.|.+|+-+|+++.=||.|..
T Consensus         4 ~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as   45 (438)
T PF00996_consen    4 EYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS   45 (438)
T ss_dssp             BESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred             cceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence            589999999999999999999999999999999999987644

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.0067  Score=47.91  Aligned_cols=99  Identities=19%  Similarity=0.255  Sum_probs=76.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      -+-+|||||..+|.||-.|.-.|.+++|.=|+--+                                           ..
T Consensus       199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L-------------------------------------------rG  235 (503)
T KOG4716|consen  199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL-------------------------------------------RG  235 (503)
T ss_pred             CceEEEccceeeeehhhhHhhcCCCcEEEEEEeec-------------------------------------------cc
Confidence            35789999999999999999999999988774210                                           00


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEEc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVC  161 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIlA  161 (259)
                      +.                  .++.+.+.+...+.|+.  +.-++..+.+++.+++...|..++.. ++...-.+|.|++|
T Consensus       236 FD------------------qdmae~v~~~m~~~Gik--f~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~A  295 (503)
T KOG4716|consen  236 FD------------------QDMAELVAEHMEERGIK--FLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWA  295 (503)
T ss_pred             cc------------------HHHHHHHHHHHHHhCCc--eeecccceeeeeccCCcEEEEeecccccccccchhhhhhhh
Confidence            11                  77778888888889998  88888888888877677666666543 44445689999999


Q ss_pred             cCC
Q 024975          162 NGH  164 (259)
Q Consensus       162 tG~  164 (259)
                      .|.
T Consensus       296 iGR  298 (503)
T KOG4716|consen  296 IGR  298 (503)
T ss_pred             hcc
Confidence            994

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.72  E-value=0.0024  Score=50.95  Aligned_cols=34  Identities=32%  Similarity=0.497  Sum_probs=31.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .+|.|||+|..|.+.|..|+++|++|+++|+++.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            5799999999999999999999999999999753

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.70  E-value=0.0033  Score=44.43  Aligned_cols=30  Identities=33%  Similarity=0.620  Sum_probs=28.8

Q ss_pred             EEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            5 VAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         5 v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      |+|+|+|..|...|.+|.+.|.+|.++.+.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~   30 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS   30 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence            789999999999999999999999999986

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.69  E-value=0.0034  Score=50.02  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=32.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |.++|+|||+|..|...|..|.+.|.+|+++++..
T Consensus         1 ~~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          1 MSMTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             CCceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            45789999999999999999999999999999963

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.67  E-value=0.0021  Score=42.21  Aligned_cols=33  Identities=27%  Similarity=0.345  Sum_probs=30.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      .++|+|||+|..|..-+..|.+.|.+|+|+.+.
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            468999999999999999999999999999986

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.59  E-value=0.0047  Score=46.08  Aligned_cols=34  Identities=29%  Similarity=0.360  Sum_probs=31.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .++|+|||||..|...+..|.+.|.+|+|+++..
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            3689999999999999999999999999998853

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.58  E-value=0.002  Score=48.06  Aligned_cols=41  Identities=15%  Similarity=0.251  Sum_probs=35.9

Q ss_pred             CCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCcccc
Q 024975          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETH  235 (259)
Q Consensus       195 ~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~  235 (259)
                      ..+++|+|||+|.+|.--+..|.+.|..|+++++...+++.
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~   47 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELT   47 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHH
Confidence            45789999999999999999999999999999987755443

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.57  E-value=0.0052  Score=44.36  Aligned_cols=34  Identities=29%  Similarity=0.254  Sum_probs=29.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+|+|+|+|.+|..|+..|...|.+++++|...
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            4689999999999999999999999999999864

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.55  E-value=0.0055  Score=43.60  Aligned_cols=33  Identities=24%  Similarity=0.270  Sum_probs=30.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      ..+|+|||||..|..-+..|.+.|.+|+|+++.
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~   45 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence            368999999999999999999999999999653

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.49  E-value=0.0043  Score=49.02  Aligned_cols=33  Identities=18%  Similarity=0.329  Sum_probs=31.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|+|||+|..|...|..|++.|++|+++|+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            579999999999999999999999999999974

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.49  E-value=0.005  Score=52.01  Aligned_cols=34  Identities=32%  Similarity=0.528  Sum_probs=31.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .++++|+|+|..|+.+|..|++.|.+|+++|+..
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3689999999999999999999999999999974

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=96.43  E-value=0.021  Score=49.18  Aligned_cols=64  Identities=16%  Similarity=0.004  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEccCCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+...+...+.+.|++  +..+++|+++...++..+.|.+.+. +++...+.+++||+|+|.|+..
T Consensus       128 ~~l~~al~~~A~~~Ga~--i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~  192 (516)
T TIGR03377       128 FRLVAANVLDAQEHGAR--IFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGR  192 (516)
T ss_pred             HHHHHHHHHHHHHcCCE--EEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHH
Confidence            66777777888888999  9999999999987534445666432 2333579999999999987643

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.43  E-value=0.0048  Score=48.64  Aligned_cols=34  Identities=35%  Similarity=0.585  Sum_probs=31.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .+|.|||+|..|...|..|++.|++|+++|.++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            4799999999999999999999999999999753

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.43  E-value=0.0062  Score=48.25  Aligned_cols=33  Identities=30%  Similarity=0.443  Sum_probs=31.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|+|||+|.-|...|..|++.|.+|+++|+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            689999999999999999999999999999864

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.42  E-value=0.0054  Score=48.48  Aligned_cols=33  Identities=27%  Similarity=0.530  Sum_probs=31.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|+|||+|..|...|..|++.|.+|+++|+++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            689999999999999999999999999999864

>PTZ00188 adrenodoxin reductase; Provisional

Probab=96.39  E-value=0.007  Score=50.88  Aligned_cols=35  Identities=23%  Similarity=0.081  Sum_probs=31.3

Q ss_pred             CCCeEEEEccCcCHHHHHHHHh-cccCeEEEEecCC
Q 024975          196 QDQVVILIGHYASGLDIKRDLA-GFAKEVHIASRSV  230 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~-~~~~~v~~~~r~~  230 (259)
                      ..++|+|||+|++|+.+|..|+ +.+.+|+++.|.+
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p   73 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP   73 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            4589999999999999999875 5688999999999

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.39  E-value=0.0072  Score=43.38  Aligned_cols=34  Identities=26%  Similarity=0.560  Sum_probs=29.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |.+|.+||.|..|...|.+|.+.|++|.++|+.+
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            5799999999999999999999999999999874

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.39  E-value=0.0075  Score=44.88  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=30.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      .++|+|||||-.|...+..|.+.|.+|+|+++.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            468999999999999999999999999999874

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.39  E-value=0.01  Score=41.08  Aligned_cols=34  Identities=29%  Similarity=0.394  Sum_probs=30.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCc-EEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~-v~v~e~~~   35 (259)
                      ..+++|||+|-+|-+++..|.+.|.+ ++|+.|+.
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            46899999999999999999999986 99998863

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=96.36  E-value=0.0078  Score=48.20  Aligned_cols=34  Identities=29%  Similarity=0.463  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+|+|||+|..|...|..|.+.|.+|+++.++.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            3589999999999999999999999999999964

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.35  E-value=0.006  Score=48.72  Aligned_cols=33  Identities=27%  Similarity=0.384  Sum_probs=31.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|+|||+|..|...|..++..|++|+++|..+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            579999999999999999999999999999975

>PRK04148 hypothetical protein; Provisional

Probab=96.35  E-value=0.0048  Score=42.22  Aligned_cols=33  Identities=24%  Similarity=0.443  Sum_probs=30.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .++++||.| .|..+|..|.+.|.+|+.+|.++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            469999999 899999999999999999999864

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.27  E-value=0.0065  Score=48.09  Aligned_cols=33  Identities=24%  Similarity=0.499  Sum_probs=31.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|+|||+|..|...|..|++.|.+|+++|+++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            579999999999999999999999999999975

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=96.26  E-value=0.0047  Score=51.01  Aligned_cols=33  Identities=21%  Similarity=0.148  Sum_probs=31.1

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++|+|||+|+.|+++|..|++.|.+|+++.+++
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp   35 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP   35 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence            579999999999999999999999999999876

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.26  E-value=0.004  Score=44.30  Aligned_cols=40  Identities=20%  Similarity=0.272  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCcc
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE  233 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~  233 (259)
                      +..+++|+|||+|..|..-+..|.+.+.+|+++++.-.++
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~   49 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKE   49 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHH
Confidence            4568999999999999999999999999999996444333

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.25  E-value=0.0071  Score=47.66  Aligned_cols=33  Identities=27%  Similarity=0.430  Sum_probs=31.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|+|||+|..|...|..|++.|.+|+++|.++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~   36 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD   36 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence            689999999999999999999999999999864

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.24  E-value=0.011  Score=41.02  Aligned_cols=33  Identities=30%  Similarity=0.538  Sum_probs=30.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~   34 (259)
                      ..+|+|||+|.-|..+|..|.+.|. +++|+|..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            3689999999999999999999998 79999996

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.17  E-value=0.005  Score=51.02  Aligned_cols=32  Identities=22%  Similarity=0.120  Sum_probs=30.2

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|+|||+|++|+++|..|++.|.+|+++.+++
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp   33 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP   33 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence            58999999999999999999999999999766

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.15  E-value=0.0078  Score=50.11  Aligned_cols=35  Identities=23%  Similarity=0.409  Sum_probs=32.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      +++|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            37899999999999999999999999999998754

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.14  E-value=0.01  Score=47.75  Aligned_cols=34  Identities=32%  Similarity=0.603  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |.+|.|||+|..|...|..|.+.|.+|.++++++
T Consensus         1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3589999999999999999999999999999964

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.10  E-value=0.0089  Score=50.70  Aligned_cols=33  Identities=33%  Similarity=0.376  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|+|+|+|+.|+.++..+...|.+|+++|.++
T Consensus       166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999999999999999999999999999874

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.10  E-value=0.01  Score=47.31  Aligned_cols=32  Identities=34%  Similarity=0.636  Sum_probs=29.9

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +|+|||+|..|..+|..|.+.|.+|+++++.+
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            69999999999999999999999999999853

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.09  E-value=0.011  Score=48.43  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=30.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|+|||+|..|+.++..|.+.|.+|+++|+..
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            579999999999999999999999999999863

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=96.09  E-value=0.01  Score=47.30  Aligned_cols=30  Identities=40%  Similarity=0.650  Sum_probs=29.0

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEee
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEK   33 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~   33 (259)
                      +|+|||+|..|..+|..|.+.|.+|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            699999999999999999999999999998

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.07  E-value=0.0054  Score=45.66  Aligned_cols=40  Identities=10%  Similarity=0.203  Sum_probs=34.7

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCcc
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE  233 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~  233 (259)
                      +..+++|+|||+|..|.-.+..|.+.+.+|+++++...++
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~   46 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTEN   46 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHH
Confidence            3467999999999999999999999999999998765444

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.03  E-value=0.013  Score=43.59  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=30.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~   34 (259)
                      ..+|+|||+|--|..+|..|.+.|+ +++++|.+
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3679999999999999999999999 69999996

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.03  E-value=0.014  Score=46.54  Aligned_cols=35  Identities=29%  Similarity=0.481  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~   36 (259)
                      |.+|+|||+|..|..+|..|...+. +++++|.++.
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            5799999999999999999999875 9999999654

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.02  E-value=0.018  Score=40.21  Aligned_cols=33  Identities=33%  Similarity=0.527  Sum_probs=29.8

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      .+|+|||+ |..|.++|+.|...++  ++.++|...
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            47999999 9999999999999875  799999974

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=96.02  E-value=0.013  Score=46.84  Aligned_cols=33  Identities=30%  Similarity=0.511  Sum_probs=30.0

Q ss_pred             eEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQ   36 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~   36 (259)
                      +|.|||+|..|.++|+.|.+.|  .++.++|++..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            7999999999999999999998  48999999753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.02  E-value=0.015  Score=38.93  Aligned_cols=31  Identities=32%  Similarity=0.526  Sum_probs=28.1

Q ss_pred             EEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         5 v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |+|+|.|..|..++..|.+.+.+++++|+++
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            6899999999999999999877999999985

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.00  E-value=0.012  Score=48.53  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..|+|+|+|+.|+.+|..|...|.+|+++|.++
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            579999999999999999999999999999864

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.98  E-value=0.013  Score=46.94  Aligned_cols=34  Identities=32%  Similarity=0.512  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..+|.|||+|..|.++|..|.+.|++|+++|+++
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3689999999999999999999999999999864

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.95  E-value=0.016  Score=41.63  Aligned_cols=33  Identities=27%  Similarity=0.327  Sum_probs=29.6

Q ss_pred             CCeEEEECCCh-HHHHHHHHHHHcCCcEEEEeeC
Q 024975            2 FRHVAVIGAGA-AGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~-~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      .++|+|||+|- .|..+|..|.+.|.+|+++.+.
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            37899999996 6999999999999999999875

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.93  E-value=0.011  Score=50.37  Aligned_cols=35  Identities=29%  Similarity=0.410  Sum_probs=32.9

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..++|+|||+|++|+-+|+.|.+.|-+|++++-++
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd   48 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD   48 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence            45789999999999999999999999999999998

>PLN02852 ferredoxin-NADP+ reductase

Probab=95.93  E-value=0.0091  Score=50.61  Aligned_cols=35  Identities=20%  Similarity=0.184  Sum_probs=31.9

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhc--ccCeEEEEecCC
Q 024975          196 QDQVVILIGHYASGLDIKRDLAG--FAKEVHIASRSV  230 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~--~~~~v~~~~r~~  230 (259)
                      .+++|+|||+|+.|+.+|..|++  .+.+|+++.|.+
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p   61 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP   61 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence            35789999999999999999986  688999999999

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.91  E-value=0.12  Score=41.30  Aligned_cols=105  Identities=19%  Similarity=0.221  Sum_probs=68.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+||+|||||-+|+-+|.-|+--=..|+++|=.+.+                                            
T Consensus       354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL--------------------------------------------  389 (520)
T COG3634         354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL--------------------------------------------  389 (520)
T ss_pred             CceEEEECCCcchHHHHHhHHhhhheeeeeecchhh--------------------------------------------
Confidence            479999999999999999998765688888765322                                            


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVV  159 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VI  159 (259)
                                            +--+.|++.+..+ +++  +..+..-+.+.-+.+....+...+. +++...+.-+-|+
T Consensus       390 ----------------------kAD~VLq~kl~sl~Nv~--ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvF  445 (520)
T COG3634         390 ----------------------KADAVLQDKLRSLPNVT--IITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVF  445 (520)
T ss_pred             ----------------------hhHHHHHHHHhcCCCcE--EEecceeeEEecCCceecceEEEeccCCceeEEEeeeeE
Confidence                                  1112334444333 666  7777777777655323333554443 3666777778888


Q ss_pred             EccCCCCCCccCCCCCC
Q 024975          160 VCNGHFSVPRLAQVPGI  176 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~  176 (259)
                      +-.|  -.|+...+.|.
T Consensus       446 VqIG--L~PNT~WLkg~  460 (520)
T COG3634         446 VQIG--LLPNTEWLKGA  460 (520)
T ss_pred             EEEe--cccChhHhhch
Confidence            8888  45555444443

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.87  E-value=0.012  Score=48.85  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=32.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV   37 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~   37 (259)
                      +++|+|+|.|-+|+++|..|.+.|.+|+++|..+..
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            478999999999999999999999999999976554

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.83  E-value=0.013  Score=47.29  Aligned_cols=33  Identities=42%  Similarity=0.621  Sum_probs=31.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++|.|||.|..||..|..|++.|++|+.+|..+
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            479999999999999999999999999999974

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=95.83  E-value=0.015  Score=47.34  Aligned_cols=34  Identities=35%  Similarity=0.653  Sum_probs=31.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC-CcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~   35 (259)
                      |.+|+|||+|-.|..+|..|++.+ .+|++.||+.
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            579999999999999999999998 7999999983

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.82  E-value=0.017  Score=46.62  Aligned_cols=34  Identities=29%  Similarity=0.343  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+|.|||+|.-|...|..|.+.|.+|+++++++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3579999999999999999999999999999964

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=95.78  E-value=0.0099  Score=51.08  Aligned_cols=33  Identities=30%  Similarity=0.286  Sum_probs=28.4

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |+|+|||+|.+|+-.+..|.+.|-++++++|++
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~   34 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD   34 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCC
Confidence            789999999999999999999999999999999

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.78  E-value=0.0086  Score=44.99  Aligned_cols=42  Identities=17%  Similarity=0.099  Sum_probs=36.5

Q ss_pred             CCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCccccc
Q 024975          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHE  236 (259)
Q Consensus       195 ~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~  236 (259)
                      ..+++|+|||||..|..=+..|++.+..||+++..-.+++.+
T Consensus        23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~   64 (223)
T PRK05562         23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLD   64 (223)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHH
Confidence            457899999999999999999999999999999887666543

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.77  E-value=0.019  Score=45.63  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=31.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|.|||+|.-|...|..|++.|.+|+++|+++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            579999999999999999999999999999874

>PRK07236 hypothetical protein; Provisional

Probab=95.77  E-value=0.012  Score=48.58  Aligned_cols=34  Identities=24%  Similarity=0.176  Sum_probs=32.2

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..+|+|||+|++|.-+|..|.+.|.+|++++|.+
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP   39 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            4789999999999999999999999999999987

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.76  E-value=0.018  Score=46.37  Aligned_cols=32  Identities=19%  Similarity=0.447  Sum_probs=30.0

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +|.|||+|.-|.+.|..|.+.|.+|.+++++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            69999999999999999999999999999853

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=95.72  E-value=0.017  Score=45.87  Aligned_cols=35  Identities=34%  Similarity=0.610  Sum_probs=32.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |+.+|.|||.|..|...|..|.+.|.+|+++|+++
T Consensus         1 ~~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~   35 (296)
T PRK11559          1 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP   35 (296)
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            56789999999999999999999999999999864

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.70  E-value=0.015  Score=48.49  Aligned_cols=33  Identities=33%  Similarity=0.468  Sum_probs=30.9

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      +|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            699999999999999999999999999999754

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=95.69  E-value=0.018  Score=49.23  Aligned_cols=33  Identities=27%  Similarity=0.357  Sum_probs=31.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++|.|||+|.-|...|..|.+.|++|+++|+++
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            579999999999999999999999999999964

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.69  E-value=0.023  Score=45.44  Aligned_cols=34  Identities=29%  Similarity=0.466  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .++|.|||+|.-|.++|..|.+.|++|.+++++.
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            3579999999999999999999999999999864

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.69  E-value=0.022  Score=44.18  Aligned_cols=34  Identities=24%  Similarity=0.468  Sum_probs=30.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            3689999999999999999999995 899999864

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.66  E-value=0.019  Score=48.67  Aligned_cols=33  Identities=27%  Similarity=0.504  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++|+|+|.|.+|+++|..|.+.|.+|++.|.++
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            579999999999999999999999999999764

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=95.65  E-value=0.014  Score=48.72  Aligned_cols=33  Identities=21%  Similarity=0.237  Sum_probs=31.1

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+|+|||+|.+|.-+|.+|++.|.+|+++.|.+
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            479999999999999999999999999999986

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=95.65  E-value=0.017  Score=39.96  Aligned_cols=32  Identities=19%  Similarity=0.276  Sum_probs=27.9

Q ss_pred             EEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         5 v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      ++|+|+|+.+.+++..+...|++|+++|..+.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999999753

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.65  E-value=0.019  Score=48.57  Aligned_cols=34  Identities=24%  Similarity=0.198  Sum_probs=30.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~   35 (259)
                      |++|+|||+|..|+.+|..|++.|  .+|+.+|.++
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            467999999999999999999984  7899999864

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=95.64  E-value=0.092  Score=45.77  Aligned_cols=64  Identities=13%  Similarity=0.049  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975          102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      +..+...|.+.+.+.+++  +..++.++++..+++....+...+ .++....+.++.||+|||.++.
T Consensus       118 G~~i~~~L~~~~~~~gi~--i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~  182 (565)
T TIGR01816       118 GHAILHTLYQQNLKADTS--FFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGR  182 (565)
T ss_pred             hHHHHHHHHHHHHhCCCE--EEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCccc
Confidence            356788888888888998  999999999987543334444422 3355667899999999998654

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.63  E-value=0.013  Score=43.42  Aligned_cols=32  Identities=31%  Similarity=0.359  Sum_probs=29.8

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|+|||+|+.|+.+|..|.+.+.+|+++.+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence            58999999999999999999999999997766

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=95.63  E-value=0.015  Score=47.21  Aligned_cols=32  Identities=28%  Similarity=0.302  Sum_probs=29.0

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|+|||+|++|+=+|..|.+.|.+|+++.|++
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~   34 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRP   34 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcc
Confidence            59999999999999999999999999999998

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=95.62  E-value=0.026  Score=44.99  Aligned_cols=35  Identities=26%  Similarity=0.445  Sum_probs=30.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCCc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQV   37 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~~   37 (259)
                      .+|.|||+|..|..+|+.|+..|. +|+++|.....
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l   37 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGI   37 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCCh
Confidence            579999999999999999999876 89999996543

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.60  E-value=0.02  Score=44.78  Aligned_cols=35  Identities=23%  Similarity=0.468  Sum_probs=31.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcC---CcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREG---HTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g---~~v~v~e~~~   35 (259)
                      ||.+|.|||+|.-|.++|..|.+.+   .++.++++++
T Consensus         1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~   38 (267)
T PRK11880          1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP   38 (267)
T ss_pred             CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH
Confidence            6789999999999999999999988   6889998864

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.59  E-value=0.028  Score=45.08  Aligned_cols=34  Identities=24%  Similarity=0.454  Sum_probs=31.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~   36 (259)
                      .+|+|||+|..|.++|+.|+..++ +++++|.++.
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            589999999999999999999986 8999998765

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.57  E-value=0.027  Score=42.77  Aligned_cols=33  Identities=33%  Similarity=0.570  Sum_probs=30.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCc---EEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHT---VVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~---v~v~e~~~   35 (259)
                      .+++|+|+|-+|..+|..|.+.|.+   +.++|+..
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            5799999999999999999999975   99999973

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.56  E-value=0.03  Score=41.66  Aligned_cols=33  Identities=36%  Similarity=0.586  Sum_probs=30.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|+|.|-.|..+|..|.+.|.+|+++|++.
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            579999999999999999999999999998863

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.53  E-value=0.025  Score=45.73  Aligned_cols=34  Identities=29%  Similarity=0.537  Sum_probs=31.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ..+|+|||+|-.|..+|..|.+.|. +++|+|.+.
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            3679999999999999999999998 899999963

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.50  E-value=0.015  Score=48.64  Aligned_cols=34  Identities=29%  Similarity=0.349  Sum_probs=32.7

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++++|||+|.+|+-.|++|.+.|.+++++.|++
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~   39 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTD   39 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence            5789999999999999999999999999999999

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.50  E-value=0.023  Score=48.22  Aligned_cols=33  Identities=21%  Similarity=0.035  Sum_probs=30.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      .++|+|+|.|-+|.++|..|.+.|.+|++.|.+
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~   40 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFC   40 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence            368999999999999999999999999999964

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.49  E-value=0.03  Score=44.37  Aligned_cols=34  Identities=26%  Similarity=0.361  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..+++|||.|..|.+++..|.+.|.+|+++++.+
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3689999999999999999999999999999974

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.43  E-value=0.027  Score=48.14  Aligned_cols=32  Identities=34%  Similarity=0.372  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      .+|+|+|.|.+|++++..|.+.|.+|++.|..
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            57999999999999999999999999999964

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=95.42  E-value=0.028  Score=44.29  Aligned_cols=33  Identities=33%  Similarity=0.604  Sum_probs=30.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ++++|||+|-+|-++++.|.+.|. +++|++++.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            579999999999999999999997 799999864

>PRK08163 salicylate hydroxylase; Provisional

Probab=95.39  E-value=0.02  Score=47.43  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=32.1

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +.+|+|||+|.+|.-+|..|.+.|.+|++++|++
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~   37 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA   37 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence            4679999999999999999999999999999987

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.37  E-value=0.033  Score=38.98  Aligned_cols=32  Identities=22%  Similarity=0.420  Sum_probs=29.4

Q ss_pred             eEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      +|+|||+|-.|..+|..|.+.|. +++++|...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 799999863

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=95.37  E-value=0.03  Score=46.19  Aligned_cols=33  Identities=27%  Similarity=0.295  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..|+|+|.|+.|..+|..|...|.+|+++|.++
T Consensus       196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            579999999999999999999999999998865

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=95.34  E-value=0.048  Score=34.39  Aligned_cols=32  Identities=34%  Similarity=0.543  Sum_probs=29.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc-CCcEEEEee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEK   33 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~-g~~v~v~e~   33 (259)
                      ..+++|+|+|..|..++..|.+. +.++.++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            36899999999999999999998 678999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=95.34  E-value=0.024  Score=42.15  Aligned_cols=37  Identities=30%  Similarity=0.352  Sum_probs=33.6

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++....|+|+|+|++|+-.|..|++.+.+|.++.|+-
T Consensus        27 ~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l   63 (262)
T COG1635          27 DYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL   63 (262)
T ss_pred             hhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence            3445679999999999999999999999999999998

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.33  E-value=0.035  Score=41.37  Aligned_cols=33  Identities=33%  Similarity=0.469  Sum_probs=30.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~   34 (259)
                      ..+|+|||+|-.|..+|..|.+.|. +++++|.+
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            3679999999999999999999998 89999996

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.31  E-value=0.037  Score=46.75  Aligned_cols=35  Identities=23%  Similarity=0.406  Sum_probs=31.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .++++|+|.|.+|+++|..|.++|.+|+++|..+.
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            35799999999999999999999999999998654

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.31  E-value=0.037  Score=42.62  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=30.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~   34 (259)
                      ..+|+|||+|.-|..+|..|.+.|+ +++|+|..
T Consensus        32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            3689999999999999999999997 89999986

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.31  E-value=0.035  Score=42.55  Aligned_cols=34  Identities=18%  Similarity=0.318  Sum_probs=30.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ..+|+|||+|-.|..+|..|.+.|. +++++|.+.
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            3589999999999999999999997 899999863

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=95.31  E-value=0.035  Score=44.31  Aligned_cols=35  Identities=31%  Similarity=0.558  Sum_probs=30.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQV   37 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~   37 (259)
                      .+|+|||+|..|.++|+.|...|  .+++++|++...
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~   37 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEK   37 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcch
Confidence            37999999999999999999998  489999997543

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=95.27  E-value=0.025  Score=51.57  Aligned_cols=36  Identities=11%  Similarity=0.088  Sum_probs=32.9

Q ss_pred             CCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..+++|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            457899999999999999999999999999999853

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.26  E-value=0.039  Score=41.46  Aligned_cols=33  Identities=24%  Similarity=0.353  Sum_probs=30.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~   34 (259)
                      ..+|+|||+|-.|..+|..|.+.|. +++++|.+
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            3679999999999999999999998 59999996

>PRK06847 hypothetical protein; Provisional

Probab=95.26  E-value=0.023  Score=46.66  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=31.8

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..+|+|||+|.+|+-+|..|.+.|.+|++++|.+
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~   37 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP   37 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            3679999999999999999999999999999987

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.24  E-value=0.037  Score=42.14  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=30.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~   34 (259)
                      ..+|+|||+|-.|..+|..|.+.|. +++|+|.+
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            3689999999999999999999998 89999886

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.24  E-value=0.043  Score=43.94  Aligned_cols=34  Identities=24%  Similarity=0.481  Sum_probs=30.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~~   36 (259)
                      .+|+|||+|..|.++|+.|...++  ++.++|.+..
T Consensus         7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~   42 (315)
T PRK00066          7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE   42 (315)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            689999999999999999999887  8999998654

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=95.23  E-value=0.028  Score=48.02  Aligned_cols=34  Identities=38%  Similarity=0.582  Sum_probs=31.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .+|.|||+|.-|...|..|++.|++|+++|+++.
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5799999999999999999999999999998744

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08017 oxidoreductase; Provisional

Probab=95.22  E-value=0.041  Score=42.47  Aligned_cols=35  Identities=29%  Similarity=0.377  Sum_probs=31.5

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |++.++|.|| |..|..+|..|.++|.+|++++++.
T Consensus         1 m~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~   36 (256)
T PRK08017          1 MQKSVLITGCSSGIGLEAALELKRRGYRVLAACRKP   36 (256)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5567999999 9999999999999999999998864

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.22  E-value=0.038  Score=44.70  Aligned_cols=33  Identities=36%  Similarity=0.598  Sum_probs=30.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~   34 (259)
                      ..+|+|||+|--|..+|..|.+.|. +++++|.+
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4689999999999999999999998 89999995

>TIGR02730 carot_isom carotene isomerase

Probab=95.20  E-value=0.084  Score=45.23  Aligned_cols=41  Identities=39%  Similarity=0.510  Sum_probs=38.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      +||+|||||++||++|..|+++|.+|+|+||+..+||.+..
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~   41 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGY   41 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeE
Confidence            69999999999999999999999999999999999877654

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=95.19  E-value=0.038  Score=46.91  Aligned_cols=33  Identities=33%  Similarity=0.390  Sum_probs=30.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+++|+|+|+.|++++..+...|.+|+++|.++
T Consensus       165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999874

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK05868 hypothetical protein; Validated

Probab=95.18  E-value=0.022  Score=46.80  Aligned_cols=33  Identities=18%  Similarity=0.209  Sum_probs=31.3

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++|+|+|+|..|+-+|..|.+.|.+|+++++++
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~   34 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP   34 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence            479999999999999999999999999999988

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=95.17  E-value=0.035  Score=43.72  Aligned_cols=32  Identities=31%  Similarity=0.502  Sum_probs=30.0

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +|.|||.|..|.++|..|.+.|.+|.++|+++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=95.17  E-value=0.033  Score=44.21  Aligned_cols=33  Identities=30%  Similarity=0.602  Sum_probs=31.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|.|||.|.-|...|..|.+.|.+|+++|+++
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~   34 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP   34 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            589999999999999999999999999999874

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.15  E-value=0.036  Score=46.82  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=30.5

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|+|+|..|+++|..|.+.|.+|++.|++.
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            579999999999999999999999999999754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	259
2xvi_A	464	Crystal Structure Of The Mutant Bacterial Flavin Co		1e-22
2xve_A	464	Crystal Structure Of Bacterial Flavin-Containing Mo		2e-22
2xvf_A	464	Crystal Structure Of Bacterial Flavin-Containing Mo		7e-22
2vq7_A	461	Bacterial Flavin-Containing Monooxygenase In Comple		8e-22
2xlr_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		3e-21
2xlp_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		3e-21
2xls_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		4e-21
1vqw_A	457	Crystal Structure Of A Protein With Similarity To F		5e-16
2gv8_A	447	Crystal Structure Of Flavin-Containing Monooxygenas		6e-16
2ylx_A	542	Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O		2e-11
2ylw_A	542	Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O		4e-11
1w4x_A	542	Phenylacetone Monooxygenase, A Baeyer-villiger Mono		4e-11
2ylz_A	542	Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O		4e-11
3uov_A	545	Crystal Structure Of Otemo (Fad Bound Form 1) Lengt		4e-10
4ap1_A	549	Oxidized Steroid Monooxygenase Bound To Nadp Length		2e-06
4aos_A	549	Oxidized Steroid Monooxygenase Bound To Nadp Length		2e-06
4ap3_A	549	Oxidized Steroid Monooxygenase Bound To Nadp Length		3e-06
3ucl_A	573	Cyclohexanone-Bound Crystal Structure Of Cyclohexan		1e-05
3gwd_A	540	Closed Crystal Structure Of Cyclohexanone Monooxyge		1e-05
4a9w_A	357	Flavin-Containing Monooxygenase From Stenotrophomon		2e-04

>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin Containing Monooxygenase (Y207s) Length = 464

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 102/207 (49%), Gaps = 12/207 (5%)
Query: 28  VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
           +V +EK    GG W YT  T     G+D N  PVHSS+Y+ L  N P+E + F  Y F  
Sbjct: 34  LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSNGPKECLEFADYTF-- 86
Query: 88  RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW---KVKSR 144
            +      +  YP  E +  Y++    + GV + +R +T V +    E ++     V+  
Sbjct: 87  -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 145
Query: 145 KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG 204
             D +  EE FD VV C GHFS P + +  G + + G+ +H+H++R    F+D+ V+L+G
Sbjct: 146 TTDTIYSEE-FDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVG 204
Query: 205 HYASGLDIKRDLAGFAKEVHIASRSVA 231
             +S  DI      +  +  I+    A
Sbjct: 205 SSSSAEDIGSQCYKYGAKKLISCYRTA 231

>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 101/207 (48%), Gaps = 12/207 (5%)
Query: 28  VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
           +V +EK    GG W YT  T     G+D N  PVHSS+Y+ L  N P+E + F  Y F  
Sbjct: 34  LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSNGPKECLEFADYTF-- 86
Query: 88  RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW---KVKSR 144
            +      +  YP  E +  Y++    + GV + +R +T V +    E ++     V+  
Sbjct: 87  -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 145
Query: 145 KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG 204
             D +  EE FD VV C GHFS P + +  G + + G+ +H+H++R    F+D+ V+L+G
Sbjct: 146 TTDTIYSEE-FDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVG 204
Query: 205 HYASGLDIKRDLAGFAKEVHIASRSVA 231
              S  DI      +  +  I+    A
Sbjct: 205 SSYSAEDIGSQCYKYGAKKLISCYRTA 231

>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464

Iteration: 1
 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 100/207 (48%), Gaps = 12/207 (5%)
Query: 28  VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
           +V +EK    GG W YT  T     G+D N  PVHSS Y+ L  N P+E + F  Y F  
Sbjct: 34  LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSXYRYLWSNGPKECLEFADYTF-- 86
Query: 88  RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW---KVKSR 144
            +      +  YP  E +  Y++    + GV + +R +T V +    E ++     V+  
Sbjct: 87  -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 145
Query: 145 KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG 204
             D +  EE FD VV C GHFS P + +  G + + G+ +H+H++R    F+D+ V+L+G
Sbjct: 146 TTDTIYSEE-FDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVG 204
Query: 205 HYASGLDIKRDLAGFAKEVHIASRSVA 231
              S  DI      +  +  I+    A
Sbjct: 205 SSYSAEDIGSQCYKYGAKKLISCYRTA 231

>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With Nadp: Native Data Length = 461

Iteration: 1
 Score =  100 bits (249), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 10/206 (4%)
Query: 28  VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
           +V +EK    GG W YT  T     G+D N  PVHSS+Y+ L  N P+E + F  Y F  
Sbjct: 39  LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSNGPKECLEFADYTF-- 91
Query: 88  RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKWKVKSRK- 145
            +      +  YP  E +  Y++    + GV + +R +T V +    E S  + V  +  
Sbjct: 92  -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 150
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGH 205
             D +    FD VV C GHFS P + +  G + + G+ +H+H++R    F+D+ V+L+G 
Sbjct: 151 TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGS 210
Query: 206 YASGLDIKRDLAGFAKEVHIASRSVA 231
             S  DI      +  +  I+    A
Sbjct: 211 SYSAEDIGSQCYKYGAKKLISCYRTA 236

>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78asp Mutant Length = 461

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 10/206 (4%)
Query: 28  VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
           +V +EK    GG W YT  T     G+D N  PVHSS+Y+ L  + P+E + F  Y F  
Sbjct: 39  LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSDGPKECLEFADYTF-- 91
Query: 88  RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKWKVKSRK- 145
            +      +  YP  E +  Y++    + GV + +R +T V +    E S  + V  +  
Sbjct: 92  -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 150
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGH 205
             D +    FD VV C GHFS P + +  G + + G+ +H+H++R    F+D+ V+L+G 
Sbjct: 151 TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGS 210
Query: 206 YASGLDIKRDLAGFAKEVHIASRSVA 231
             S  DI      +  +  I+    A
Sbjct: 211 SYSAEDIGSQCYKYGAKKLISCYRTA 236

>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen- Activation By Flavin-Containing Monooxygenase: Asn78ser Mutant Length = 461

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 10/206 (4%)
Query: 28  VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
           +V +EK    GG W YT  T     G+D N  PVHSS+Y+ L  + P+E + F  Y F  
Sbjct: 39  LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSSGPKECLEFADYTF-- 91
Query: 88  RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKWKVKSRK- 145
            +      +  YP  E +  Y++    + GV + +R +T V +    E S  + V  +  
Sbjct: 92  -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 150
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGH 205
             D +    FD VV C GHFS P + +  G + + G+ +H+H++R    F+D+ V+L+G 
Sbjct: 151 TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGS 210
Query: 206 YASGLDIKRDLAGFAKEVHIASRSVA 231
             S  DI      +  +  I+    A
Sbjct: 211 SYSAEDIGSQCYKYGAKKLISCYRTA 236

>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78lys Mutant Length = 461

Iteration: 1
 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 10/206 (4%)
Query: 28  VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
           +V +EK    GG W YT  T     G+D N  PVHSS+Y+ L    P+E + F  Y F  
Sbjct: 39  LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSKGPKECLEFADYTF-- 91
Query: 88  RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKWKVKSRK- 145
            +      +  YP  E +  Y++    + GV + +R +T V +    E S  + V  +  
Sbjct: 92  -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 150
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGH 205
             D +    FD VV C GHFS P + +  G + + G+ +H+H++R    F+D+ V+L+G 
Sbjct: 151 TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGS 210
Query: 206 YASGLDIKRDLAGFAKEVHIASRSVA 231
             S  DI      +  +  I+    A
Sbjct: 211 SYSAEDIGSQCYKYGAKKLISCYRTA 236

>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin- Containing Monooxygenases And To Mammalian Dimethylalanine Monooxygenases Length = 457

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 101/214 (47%), Gaps = 31/214 (14%)
Query: 28  VVVYEKGEQVGGSWIYTSETE-------------SDPLGVDPNRYPVHSS-LYKSLRVNL 73
           V ++E+    GG W YTS                ++P+ V P   PV+ S LY+ L+ N 
Sbjct: 36  VTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPI-VGPAALPVYPSPLYRDLQTNT 94
Query: 74  PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL 133
           P EL G+    F  +  +       +P    +  Y + +A+   +   ++L T+VL+   
Sbjct: 95  PIELXGYCDQSFKPQTLQ-------FPHRHTIQEYQRIYAQP--LLPFIKLATDVLDIE- 144
Query: 134 VESNKWKV--KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSW----PGKQMHSH 187
            +   W V  K  K    + ++ FDAV +CNGH+ VP +  + G+D +    PG  +HS 
Sbjct: 145 KKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSS 204
Query: 188 NYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK 221
            +R P  F  + V+++G  +S  D+ R L   AK
Sbjct: 205 LFREPELFVGESVLVVGGASSANDLVRHLTPVAK 238

>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo) From S.Pombe And Nadph Cofactor Complex Length = 447

Iteration: 1
 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 101/214 (47%), Gaps = 31/214 (14%)
Query: 28  VVVYEKGEQVGGSWIYTSETE-------------SDPLGVDPNRYPVHSS-LYKSLRVNL 73
           V ++E+    GG W YTS                ++P+ V P   PV+ S LY+ L+ N 
Sbjct: 34  VTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPI-VGPAALPVYPSPLYRDLQTNT 92
Query: 74  PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL 133
           P EL G+    F  +  +       +P    +  Y + +A+   +   ++L T+VL+   
Sbjct: 93  PIELXGYCDQSFKPQTLQ-------FPHRHTIQEYQRIYAQP--LLPFIKLATDVLDIE- 142
Query: 134 VESNKWKV--KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSW----PGKQMHSH 187
            +   W V  K  K    + ++ FDAV +CNGH+ VP +  + G+D +    PG  +HS 
Sbjct: 143 KKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSS 202
Query: 188 NYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK 221
            +R P  F  + V+++G  +S  D+ R L   AK
Sbjct: 203 LFREPELFVGESVLVVGGASSANDLVRHLTPVAK 236

>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Asp66ala Mutant In Complex With Nadp And Mes Length = 542

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 22  LRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80
           LRE G +V V E    VGG W +             NRYP      +S+           
Sbjct: 35  LRELGRSVHVIETAGDVGGVWYW-------------NRYPGARCAIESIEY--------- 72
Query: 81  QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKW 139
             Y F     +      RY    E+LRY+   A +F +   +  HT V  A   E +N W
Sbjct: 73  -CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW 131
Query: 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-RIPNPFQDQ 198
            V +   D +        +++ +G  SVP+L   PG+  + G   H+ N+   P  F  Q
Sbjct: 132 TVDTNHGDRIRAR----YLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
            V +IG  +SG+ +   +A  A E+ +  R+
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRT 218

>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Arg337lys Mutant In Complex With Mes Length = 542

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 22  LRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80
           LRE G +V V E    VGG W +             NRYP      +S+           
Sbjct: 35  LRELGRSVHVIETAGDVGGVWYW-------------NRYPGARCDIESIEY--------- 72
Query: 81  QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKW 139
             Y F     +      RY    E+LRY+   A +F +   +  HT V  A   E +N W
Sbjct: 73  -CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW 131
Query: 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-RIPNPFQDQ 198
            V +   D +        +++ +G  SVP+L   PG+  + G   H+ N+   P  F  Q
Sbjct: 132 TVDTNHGDRIRAR----YLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
            V +IG  +SG+ +   +A  A E+ +  R+
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRT 218

>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger Monooxygenase Length = 542

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 22  LRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80
           LRE G +V V E    VGG W +             NRYP      +S+           
Sbjct: 35  LRELGRSVHVIETAGDVGGVWYW-------------NRYPGARCDIESIEY--------- 72
Query: 81  QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKW 139
             Y F     +      RY    E+LRY+   A +F +   +  HT V  A   E +N W
Sbjct: 73  -CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW 131
Query: 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-RIPNPFQDQ 198
            V +   D +        +++ +G  SVP+L   PG+  + G   H+ N+   P  F  Q
Sbjct: 132 TVDTNHGDRIRAR----YLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
            V +IG  +SG+ +   +A  A E+ +  R+
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRT 218

>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Met446gly Mutant Length = 542

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 22  LRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80
           LRE G +V V E    VGG W +             NRYP      +S+           
Sbjct: 35  LRELGRSVHVIETAGDVGGVWYW-------------NRYPGARCDIESIEY--------- 72
Query: 81  QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKW 139
             Y F     +      RY    E+LRY+   A +F +   +  HT V  A   E +N W
Sbjct: 73  -CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW 131
Query: 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-RIPNPFQDQ 198
            V +   D +        +++ +G  SVP+L   PG+  + G   H+ N+   P  F  Q
Sbjct: 132 TVDTNHGDRIRAR----YLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
            V +IG  +SG+ +   +A  A E+ +  R+
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRT 218

>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1) Length = 545

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 39/217 (17%)
Query: 23  REGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82
           + G  V+  E GE VGG+W +             NRYP         R++      G+ A
Sbjct: 30  QAGMKVLGIEAGEDVGGTWYW-------------NRYP-------GCRLDTESYAYGYFA 69
Query: 83  YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKV 141
              +   +E S +    P   E+LRY+   A    V +  R +T V  AR VE+++ W+V
Sbjct: 70  LKGIIPEWEWSENFASQP---EMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEV 126
Query: 142 KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-------- 193
            +   ++VV   T   ++   G  S  R+  + GIDS+ G+  HS   R P         
Sbjct: 127 -TLDNEEVV---TCRFLISATGPLSASRMPDIKGIDSFKGESFHSS--RWPTDAEGAPKG 180
Query: 194 -PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
             F  + V +IG  A+G+ I    A  AKE+++  R+
Sbjct: 181 VDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRT 217

>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 33/216 (15%)
Query: 19  HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78
           H    +G TV  +E    VGG W +             NRYP         R ++     
Sbjct: 38  HRFRSQGLTVRAFEAASGVGGVWYW-------------NRYP-------GARCDVESIDY 77
Query: 79  GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN- 137
            +   P + + +  S    +Y    E+L YL++ A  F + + +R  T V +A L E   
Sbjct: 78  SYSFSPELEQEWNWS---EKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGL 134
Query: 138 KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN---P 194
           +W V++ + D+V    +   +VV  G  S        G+D + G  +H+   R P+    
Sbjct: 135 RWTVRTDRGDEV----SARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTA--RWPHDGVD 188
Query: 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230
           F  + V +IG  +SG+     +A  A+++ +  RS 
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSA 224

>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 33/216 (15%)
Query: 19  HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78
           H    +G TV  +E    VGG W +             NRYP         R ++     
Sbjct: 38  HRFRSQGLTVRAFEAASGVGGVWYW-------------NRYP-------GARCDVESIDY 77
Query: 79  GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN- 137
            +   P + + +  S    +Y    E+L YL++ A  F + + +R  T V +A L E   
Sbjct: 78  SYSFSPELEQEWNWS---EKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGL 134
Query: 138 KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN---P 194
           +W V++ + D+V    +   +VV  G  S        G+D + G  +H+   R P+    
Sbjct: 135 RWTVRTDRGDEV----SARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTA--RWPHDGVD 188
Query: 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230
           F  + V +IG  +SG+     +A  A+++ +  RS 
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSA 224

>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 33/216 (15%)
Query: 19  HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78
           H    +G TV  +E    VGG W +             NRYP         R ++     
Sbjct: 38  HRFRSQGLTVRAFEAASGVGGVWYW-------------NRYP-------GARCDVESIDY 77
Query: 79  GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN- 137
            +   P + + +  S    +Y    E+L YL++ A  F + + +R  T V +A L E   
Sbjct: 78  SYSFSPELEQEWNWS---EKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGL 134
Query: 138 KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN---P 194
           +W V++ + D+V    +   +VV  G  S        G+D + G  +H+   R P+    
Sbjct: 135 RWTVRTDRGDEV----SARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTA--RWPHDGVD 188
Query: 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230
           F  + V +IG  +SG+     +A  A+++ +  RS 
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSA 224

>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone Monooxygenase In The Rotated Conformation Length = 573

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 39/204 (19%)
Query: 19  HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKS--LRVNLPRE 76
           HEL   G T V ++K +  GG+W +             NRYP   S  +S   R +  R+
Sbjct: 62  HEL---GLTTVGFDKADGPGGTWYW-------------NRYPGALSDTESHLYRFSFDRD 105
Query: 77  LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR-LVE 135
           L+            + S     Y    E+L YL++    F + +  +  TEV +A  L +
Sbjct: 106 LL------------QESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDD 153
Query: 136 SNKWKVKSRKKDDVVEEETFDAVVVCN--GHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN 193
            N W+V +         E + A  V N  G  S      +PG+D++ G+ +H+  +    
Sbjct: 154 ENLWEVTTDHG------EVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGK 207
Query: 194 PFQDQVVILIGHYASGLDIKRDLA 217
               + V +IG  ++G  +   LA
Sbjct: 208 SLAGRRVGVIGTGSTGQQVITSLA 231

>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase Length = 540

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 39/204 (19%)
Query: 19  HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKS--LRVNLPRE 76
           HEL   G T V ++K +  GG+W +             NRYP   S  +S   R +  R+
Sbjct: 29  HEL---GLTTVGFDKADGPGGTWYW-------------NRYPGALSDTESHLYRFSFDRD 72
Query: 77  LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR-LVE 135
           L+            + S     Y    E+L YL++    F + +  +  TEV +A  L +
Sbjct: 73  LL------------QESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDD 120
Query: 136 SNKWKVKSRKKDDVVEEETFDAVVVCN--GHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN 193
            N W+V +         E + A  V N  G  S      +PG+D++ G+ +H+  +    
Sbjct: 121 ENLWEVTTDHG------EVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGK 174
Query: 194 PFQDQVVILIGHYASGLDIKRDLA 217
               + V +IG  ++G  +   LA
Sbjct: 175 SLAGRRVGVIGTGSTGQQVITSLA 198

>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas Maltophilia Length = 357

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 21/134 (15%)
Query: 99  YPGHEEVLRYLQNFAREFGVD-------QVVRLHTEVLNARLVESNKWKVKSRKKDDVVE 151
           YP   EVL YL  + +++ +        Q V    E L     +  +W  +         
Sbjct: 72  YPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQWLAR--------- 122
Query: 152 EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLD 211
                AV+   G +      +  G++S+ G Q+HS +Y  P PF    V +IG   SG  
Sbjct: 123 -----AVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQ 177
Query: 212 IKRDLAGFAKEVHI 225
           I  +++  A+   I
Sbjct: 178 ILAEVSTVAETTWI 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	4e-79
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	4e-78
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	2e-46
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	1e-31
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	1e-30
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	4e-30
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	4e-29
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	8e-29
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	2e-13
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	2e-10
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	6e-10
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	7e-10
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	1e-09
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	1e-09
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	2e-09
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	9e-09
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	1e-08
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	1e-08
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	2e-08
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	2e-08
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	3e-08
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	5e-08
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	6e-08
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	1e-07
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	1e-07
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	2e-07
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	3e-07
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	3e-07
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	5e-07
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	5e-07
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	7e-07
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	8e-07
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	1e-06
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	2e-06
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	2e-06
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	2e-06
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	2e-06
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	2e-06
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	3e-06
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	3e-06
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	4e-06
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	6e-06
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	6e-06
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	7e-06
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	7e-06
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	8e-06
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	9e-06
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	9e-06
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	1e-05
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	1e-05
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	1e-05
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	2e-05
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	2e-05
3dme_A	369	Conserved exported protein; structural genomics, P	3e-05
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	3e-05
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	4e-05
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	5e-05
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	6e-05
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	7e-05
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	8e-05
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	8e-05
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	9e-05
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	1e-04
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	1e-04
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	1e-04
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	1e-04
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	1e-04
3atr_A	453	Conserved archaeal protein; saturating double bond	2e-04
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	2e-04
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	2e-04
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	2e-04
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	2e-04
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	4e-04
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	7e-04
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	7e-04

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score =  245 bits (626), Expect = 4e-79
 Identities = 73/263 (27%), Positives = 117/263 (44%), Gaps = 16/263 (6%)

Query: 1   MFRHVAVIGAGAAGLVVGHELL------REGHTVVVYEKGEQVGGSWIYTSETESDPLGV 54
           M   +A++GAG +G+              E   +V +EK    GG W YT        G+
Sbjct: 1   MATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYT-----WRTGL 55

Query: 55  DPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR 114
           D N  PVHSS+Y+ L  N P+E + F  Y F          +  YP  E +  Y++    
Sbjct: 56  DENGEPVHSSMYRYLWSNGPKECLEFADYTFDE---HFGKPIASYPPREVLWDYIKGRVE 112

Query: 115 EFGVDQVVRLHTEVLNARLVE-SNKWKVKSR-KKDDVVEEETFDAVVVCNGHFSVPRLAQ 172
           + GV + +R +T V +    E S  + V  +    D +  E FD VV C GHFS P + +
Sbjct: 113 KAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPE 172

Query: 173 VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD 232
             G + + G+ +H+H++R    F+D+ V+L+G   S  DI      +  +  I+    A 
Sbjct: 173 FEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP 232

Query: 233 ETHEKQPGYDNMWLHSMVRTKKC 255
             ++    +D       V T+  
Sbjct: 233 MGYKWPENWDERPNLVRVDTENA 255

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score =  242 bits (618), Expect = 4e-78
 Identities = 70/269 (26%), Positives = 117/269 (43%), Gaps = 36/269 (13%)

Query: 3   RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETE------------ 48
           R +A+IGAG +GLV    LL E     V ++E+    GG W YTS               
Sbjct: 7   RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPIL 66

Query: 49  -SDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLR 107
            ++P+          S LY+ L+ N P ELMG+    F            ++P    +  
Sbjct: 67  TTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKP-------QTLQFPHRHTIQE 119

Query: 108 YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR--KKDDVVEEETFDAVVVCNGHF 165
           Y + +A+   +   ++L T+VL+    +   W V  +  K    + ++ FDAV +CNGH+
Sbjct: 120 YQRIYAQ--PLLPFIKLATDVLDIEK-KDGSWVVTYKGTKAGSPISKDIFDAVSICNGHY 176

Query: 166 SVPRLAQVPGIDSW----PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK 221
            VP +  + G+D +    PG  +HS  +R P  F  + V+++G  +S  D+ R L   AK
Sbjct: 177 EVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAK 236

Query: 222 EVHIASRSVADETHEKQPGYDNMWLHSMV 250
                S     +        +++     +
Sbjct: 237 HPIYQSLLGGGDIQ-----NESLQQVPEI 260

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score =  157 bits (399), Expect = 2e-46
 Identities = 53/227 (23%), Positives = 85/227 (37%), Gaps = 35/227 (15%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
           V VIG G +GL  G+ L R G + V+ +     GG+W               + +     
Sbjct: 6   VVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAW--------------QHAWH---- 47

Query: 65  LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
              SL +  P        +P  A           YP   EVL YL  + +++ +   V  
Sbjct: 48  ---SLHLFSPAGWSSIPGWPMPA-------SQGPYPARAEVLAYLAQYEQKYALP--VLR 95

Query: 125 HTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQM 184
              V         + +V +R       +    AV+   G +      +  G++S+ G Q+
Sbjct: 96  PIRVQRVSHFG-ERLRVVARDG----RQWLARAVISATGTWGEAYTPEYQGLESFAGIQL 150

Query: 185 HSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231
           HS +Y  P PF    V +IG   SG  I  +++  A+   I     A
Sbjct: 151 HSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEPA 197

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score =  118 bits (298), Expect = 1e-31
 Identities = 44/230 (19%), Positives = 75/230 (32%), Gaps = 43/230 (18%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH-- 62
           VA+IGAGAAG+ +   L   G T V+  +   VG S+                 +P    
Sbjct: 7   VAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFK---------------HWPKSTR 51

Query: 63  ---SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD 119
               S   +         +     P    N         +   E    YLQ  A  + ++
Sbjct: 52  TITPSFTSNGFGMPDMNAISMDTSPAFTFN-------EEHISGETYAEYLQVVANHYELN 104

Query: 120 QVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSW 179
             +  +T V N    +   + + +       E    D + V  G ++ P+     GI   
Sbjct: 105 --IFENTVVTNISADD-AYYTIATTT-----ETYHADYIFVATGDYNFPKKPFKYGI--- 153

Query: 180 PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
                H       + F     ++IG   SG D    LA    ++ + + +
Sbjct: 154 -----HYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTST 198

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score =  118 bits (298), Expect = 1e-30
 Identities = 57/218 (26%), Positives = 84/218 (38%), Gaps = 45/218 (20%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP---- 60
             VIGAG  G+     + + G  V+  E GE VGG+W +             NRYP    
Sbjct: 12  AVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYW-------------NRYPGCRL 58

Query: 61  -VHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD 119
              S  Y            G+ A   +   +E S     +    E+LRY+   A    V 
Sbjct: 59  DTESYAY------------GYFALKGIIPEWEWS---ENFASQPEMLRYVNRAADAMDVR 103

Query: 120 QVVRLHTEVLNARLVE-SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDS 178
           +  R +T V  AR VE    W+V    ++      T   ++   G  S  R+  + GIDS
Sbjct: 104 KHYRFNTRVTAARYVENDRLWEVTLDNEE----VVTCRFLISATGPLSASRMPDIKGIDS 159

Query: 179 WPGKQMHS----HNYRIPNP---FQDQVVILIGHYASG 209
           + G+  HS     +         F  + V +IG  A+G
Sbjct: 160 FKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATG 197

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score =  116 bits (294), Expect = 4e-30
 Identities = 51/188 (27%), Positives = 76/188 (40%), Gaps = 38/188 (20%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP---- 60
           V V+GAG AGL   H    +G TV  +E    VGG W +             NRYP    
Sbjct: 24  VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYW-------------NRYPGARC 70

Query: 61  -VHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD 119
            V S  Y               +Y F     +      +Y    E+L YL++ A  F + 
Sbjct: 71  DVESIDY---------------SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLR 115

Query: 120 QVVRLHTEVLNARLVE-SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDS 178
           + +R  T V +A L E   +W V++ + D+V    +   +VV  G  S        G+D 
Sbjct: 116 RDIRFDTRVTSAVLDEEGLRWTVRTDRGDEV----SARFLVVAAGPLSNANTPAFDGLDR 171

Query: 179 WPGKQMHS 186
           + G  +H+
Sbjct: 172 FTGDIVHT 179

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score =  113 bits (286), Expect = 4e-29
 Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 44/191 (23%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP---- 60
           V V+GAG +GL   + L   G +V V E    VGG W +             NRYP    
Sbjct: 19  VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYW-------------NRYPGARC 65

Query: 61  -VHSSLYKSLRVNLPRELMGFQAYPF---VARNYEGSVDLRRYPGHEEVLRYLQNFAREF 116
            + S  Y                Y F   V + +  +    RY    E+LRY+   A +F
Sbjct: 66  DIESIEY---------------CYSFSEEVLQEWNWT---ERYASQPEILRYINFVADKF 107

Query: 117 GVDQVVRLHTEVLNARLVE-SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPG 175
            +   +  HT V  A   E +N W V +   D +        +++ +G  SVP+L   PG
Sbjct: 108 DLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRI----RARYLIMASGQLSVPQLPNFPG 163

Query: 176 IDSWPGKQMHS 186
           +  + G   H+
Sbjct: 164 LKDFAGNLYHT 174

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score =  113 bits (284), Expect = 8e-29
 Identities = 53/217 (24%), Positives = 83/217 (38%), Gaps = 49/217 (22%)

Query: 5   VAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP--- 60
             VIGAG  G+   H+L  E G T V ++K +  GG+W Y             NRYP   
Sbjct: 11  AVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTW-YW------------NRYPGAL 57

Query: 61  --VHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVD-LRRYPGHEEVLRYLQNFAREFG 117
               S LY                + F  R+          Y    E+L YL++    F 
Sbjct: 58  SDTESHLY---------------RFSF-DRDLLQESTWKTTYITQPEILEYLEDVVDRFD 101

Query: 118 VDQVVRLHTEVLNARLVE-SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGI 176
           + +  +  TEV +A  ++  N W+V +       E      VV   G  S      +PG+
Sbjct: 102 LRRHFKFGTEVTSALYLDDENLWEVTTDHG----EVYRAKYVVNAVGLLSAINFPNLPGL 157

Query: 177 DSWPGKQMHS----HNYRIPNPFQDQVVILIGHYASG 209
           D++ G+ +H+               + V +IG  ++G
Sbjct: 158 DTFEGETIHTAAWPEGK----SLAGRRVGVIGTGSTG 190

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 68.2 bits (166), Expect = 2e-13
 Identities = 47/243 (19%), Positives = 75/243 (30%), Gaps = 32/243 (13%)

Query: 5   VAVIGAGAAGLVVGHELLREGH-----TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRY 59
           +  +G G + + +   L           V+  +K       W   +      L +     
Sbjct: 33  LIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVSQSELQI----- 85

Query: 60  PVHSSLYKSLRVNLPRELMGFQAYPFVA-RNYEGSVDLRRYPGHEEVLRYLQNFAREFGV 118
              S L   + +  P     F  Y     R  +       YP   E   YL+  A  F  
Sbjct: 86  ---SFLKDLVSLRNPTSPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQE 142

Query: 119 DQVVRLHTEVLNARLVESN----KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVP 174
               R   EVL    + S       +V SR  D      T  A+VV  G    PR+ QV 
Sbjct: 143 Q--SRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPG--GTPRIPQVF 198

Query: 175 GIDSWPGKQMHSHNY------RIPNPFQDQVVILIGHYASGLDIKRDLA--GFAKEVHIA 226
                 G+  H   Y      +  +  +   + +IG   S  +   DL     + +  + 
Sbjct: 199 RALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMI 258

Query: 227 SRS 229
            R+
Sbjct: 259 LRA 261

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 59.4 bits (143), Expect = 2e-10
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE 48
          + VAVIGAG +GL   ++L   G  V V+E   + GG  + +   +
Sbjct: 14 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG-KLRSVSQD 58

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 40/234 (17%), Positives = 67/234 (28%), Gaps = 80/234 (34%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           +++AV+GAG AGL         GH V +++   ++GG +              P +    
Sbjct: 374 KNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAK--------QIPGK---- 421

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
                        E                             LRY +      GV   +
Sbjct: 422 ------------EEFYET-------------------------LRYYRRMIEVTGVT--L 442

Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDS---W 179
           +L+  V                      + + FD  ++ +G   VPR   + GID     
Sbjct: 443 KLNHTV-------------------TADQLQAFDETILASG--IVPRTPPIDGIDHPKVL 481

Query: 180 PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE 233
               +         P  ++V I IG    G D    L+   +          +E
Sbjct: 482 SYLDVLRD----KAPVGNKVAI-IGCGGIGFDTAMYLSQPGESTSQNIAGFCNE 530

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 57.7 bits (139), Expect = 7e-10
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL 52
           +VAV+G G +GL V H L   G   V+ E   ++GG  + T       +
Sbjct: 17 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG-AVGTHALAGYLV 65

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 4/116 (3%)

Query: 3   RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGG-SWIYTSETESDPLGVD--PNR 58
             +A+IGAG AGL  G  L + G H   + E+ + VGG             +G       
Sbjct: 7   SRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVPS 66

Query: 59  YPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR 114
           Y     +       +    +  +        Y    D  R P     ++ L     
Sbjct: 67  YDTIQEIMDRTGDKVDGPKLRREFLHEDGEIYVPEKDPVRGPQVMAAVQKLGQLLA 122

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 57.0 bits (137), Expect = 1e-09
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 1  MFRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETE 48
          M R V V+G G +GL   + L R      VV+ E  E++GG WI +    
Sbjct: 1  MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGG-WIRSVRGP 49

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 54.2 bits (129), Expect = 9e-09
 Identities = 33/142 (23%), Positives = 51/142 (35%), Gaps = 12/142 (8%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYE-KGEQVGG-SWIYTSETESDPLGVDPN--- 57
           + + ++GAG AGLV G  L R GH V + E    +VGG    + ++        DP    
Sbjct: 45  KRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYA 104

Query: 58  -----RYPVHSSLYKSL--RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQ 110
                R P    L  +L  ++ L R L           N +  V    Y   ++   +  
Sbjct: 105 EAGAMRLPSFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKTWTN 164

Query: 111 NFAREFGVDQVVRLHTEVLNAR 132
                   +   R HT +   R
Sbjct: 165 GAPSPEFKEPDKRNHTWIRTNR 186

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
            V+GAG  GL+ G  L R GH ++V EK   +GG
Sbjct: 3  AVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGG 37

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 53.9 bits (129), Expect = 1e-08
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 3  RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETE 48
          + + ++G G  GL   +   R      + + E GE++GG  + T   +
Sbjct: 5  KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGG-KVATYRED 51

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVD--PNRYP 60
          +HV ++GAG AGL   + L   GH V V E  E+ GG  + T   E      +  P R P
Sbjct: 34 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGR-VRTYRNEEAGWYANLGPMRLP 92

Query: 61 VH 62
            
Sbjct: 93 EK 94

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 3  RHVAVIGAGAAGLVVGHELLRE------GHTVVVYEKGEQVGGSWIYTSETE 48
          +HV +IG G  GL     + +E         + + E   +VGG  I T + +
Sbjct: 6  KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG-KIQTVKKD 56

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           V VIGAG AGL    EL  +G+ V VY++ +++GG
Sbjct: 125 VGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGG 159

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 52.2 bits (125), Expect = 5e-08
 Identities = 34/172 (19%), Positives = 58/172 (33%), Gaps = 17/172 (9%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKG----EQVGGSWI-YTSETESDPLGVDPNRY 59
           + VIG G  G  +   +   GH V++ E+      Q+G S +  T       LG+     
Sbjct: 10  LIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMK 69

Query: 60  PVHSSLYKSLRVNLPRE----LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE 115
                + +       +E      GF  +P     +   V+ R           L   +  
Sbjct: 70  RAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVE-RA-----RFDDMLLRNSER 123

Query: 116 FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167
            GVD  VR   EV++          V+ R  + V        +V  +G+ + 
Sbjct: 124 KGVD--VRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTR 173

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 51.8 bits (123), Expect = 6e-08
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 1  MFRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETE 48
          +   + +IGAG  GL     L   G+    +YE  +  GG    +   E
Sbjct: 8  LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGG-LSRSFLDE 55

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 38/234 (16%), Positives = 63/234 (26%), Gaps = 74/234 (31%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
             V ++GAG +G      L+  G+TV + +  E++GG     +          P      
Sbjct: 390 DSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVA--------ALPGL---- 437

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
                        E                               Y +         Q+ 
Sbjct: 438 ------------GEWSYH-------------------------RDYRET--------QIT 452

Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQ--------VP 174
           +L  +   ++L    K         D V +   D V++  G  +              +P
Sbjct: 453 KLLKKNKESQLALGQKPMTA-----DDVLQYGADKVIIATG--ARWNTDGTNCLTHDPIP 505

Query: 175 GIDSWPGKQMHSHN-YRIPNPFQDQVVIL-IGHYASGLDIKRDLAGFAKEVHIA 226
           G D+    Q+              +VVIL    Y     +   LA    EV I 
Sbjct: 506 GADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIV 559

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 51.0 bits (121), Expect = 1e-07
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 1  MFRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETE 48
          +   V VIGAG  GL     L +  G + ++ +  E  GG    T  T 
Sbjct: 9  ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG-LASTDVTP 56

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
            ++G+G  G V  +EL +    V+V EK   +GG+  YT + E    G+  ++Y  H
Sbjct: 4  YIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN-AYTEDCE----GIQIHKYGAH 56

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 25/114 (21%), Positives = 36/114 (31%), Gaps = 22/114 (19%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYE----------------KGEQVGGSWIYTSE 46
             V V+G G AGL    EL + G+ V V E                +   + G     + 
Sbjct: 12  HSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTF 71

Query: 47  TESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYP 100
           +E     V   R P              REL G +   F  +N    V+ +   
Sbjct: 72  SEGHFYNVGATRIPQSHITLD-----YCREL-GVEIQGFGNQNANTFVNYQSDT 119

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 49.7 bits (118), Expect = 3e-07
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE 48
           + ++GAG +G V+G +L  +GH V + ++ + +GG+  Y +   
Sbjct: 5  KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN-SYDARDS 48

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGG 39
             +A++GAG A +     L R G++ + ++EK E VGG
Sbjct: 188 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG 225

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 49.4 bits (117), Expect = 5e-07
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL 52
            ++GAG AG V+   L   G  V++ ++   +GG+  Y    ++  L
Sbjct: 32 YLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGN-AYDCYDDAGVL 78

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 41/235 (17%), Positives = 61/235 (25%), Gaps = 79/235 (33%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
             V V+GAG +GL     L   G+ VV+ E G  +GG                       
Sbjct: 392 ARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGG----------------------- 428

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQN-FAREFGVDQV 121
                  RV                    G     R      V  Y +   A    V+  
Sbjct: 429 -------RVTQ-------------ESALPGLSAWGR------VKEYREAVLAELPNVE-- 460

Query: 122 VRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPG 181
           +   + +                   D + E  F+ V+   G  +  R   V    +   
Sbjct: 461 IYRESPM-----------------TGDDIVEFGFEHVITATG--ATWRTDGVARFHTTAL 501

Query: 182 KQMHSHN-------YRIPNPFQDQVVIL-IGHYASGLDIKRDLAGFAKEVHIASR 228
                         +    P   +VV+    HY  G  +   LA    EV I + 
Sbjct: 502 PIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTP 556

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401

 Score = 48.2 bits (116), Expect = 8e-07
 Identities = 35/197 (17%), Positives = 70/197 (35%), Gaps = 54/197 (27%)

Query: 1   MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG------- 53
            +    +IGAGAAGL    +L + G +V V++ G+++ G  I  S       G       
Sbjct: 3   QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI-GRKILMS-------GGGFCNFT 54

Query: 54  ---VDPNRYPVHSS----LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEE-- 104
              V P  Y   S     +  +L      + +               V  +    HE+  
Sbjct: 55  NLEVTPAHY--LSQNPHFVKSALARYTNWDFISL-------------VAEQGITYHEKEL 99

Query: 105 -----------VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153
                      ++  L++   ++G    + L +EV     +++++      + +    + 
Sbjct: 100 GQLFCDEGAEQIVEMLKSECDKYGAK--ILLRSEVSQVERIQNDEKVRFVLQVNS--TQW 155

Query: 154 TFDAVVVCNGHFSVPRL 170
               ++V  G  S+P L
Sbjct: 156 QCKNLIVATGGLSMPGL 172

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 31/168 (18%), Positives = 53/168 (31%), Gaps = 13/168 (7%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGE----QVGGSWIYTSETESDPLGVDPNRYP 60
           V VIGAG AG V    + + G  V + EK +     +G S +       D  G       
Sbjct: 8   VLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLD-AVK 66

Query: 61  VHSSLYK-SLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD 119
                 K   +    +E+  F      +  +  +  + R        + L + A   GVD
Sbjct: 67  AQGFQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPR----GNFDKTLADEAARQGVD 122

Query: 120 QVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167
             V     V + +              +    E     ++  +G+  V
Sbjct: 123 --VEYEVGVTDIKF-FGTDSVTTIEDINGNKREIEARFIIDASGYGRV 167

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
          R VA++GAG +GL     L + G +V V E  ++VGG
Sbjct: 6  RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGG 42

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 49/191 (25%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS----------ETESDPLGV 54
           V VIG G +GL+       EG  V++ +KG ++ G  +  S              + +  
Sbjct: 29  VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL-GRKLAISGGGRCNVTNRLPLDEIV-- 85

Query: 55  DPNRYPVHSS-LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEE--------- 104
                P +   LY +  +    +++ F              +       EE         
Sbjct: 86  --KHIPGNGRFLYSAFSIFNNEDIITF-------------FENLGVKLKEEDHGRMFPVS 130

Query: 105 -----VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159
                V+  L    ++ GV   +R +T V            V  +  + +      + VV
Sbjct: 131 NKAQSVVDALLTRLKDLGVK--IRTNTPVETIEYENGQTKAVILQTGEVL----ETNHVV 184

Query: 160 VCNGHFSVPRL 170
           +  G  SVP+ 
Sbjct: 185 IAVGGKSVPQT 195

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 58/193 (30%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG----------V 54
           V +IGAGAAG++   E  + G  V+V +      G  I  S       G           
Sbjct: 30  VVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAP-GEKIRIS-------GGGRCNFTNIHA 81

Query: 55  DPNRYPVHSS----LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEE------ 104
            P  +   S        +L    P++ +               V+      HE+      
Sbjct: 82  SPRNF--LSGNPHFCKSALARYRPQDFVAL-------------VERHGIGWHEKTLGQLF 126

Query: 105 -------VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157
                  ++R L    +E GV   +RL T +       ++ ++V +             +
Sbjct: 127 CDHSAKDIIRMLMAEMKEAGVQ--LRLETSIGEVE-RTASGFRVTTSA-----GTVDAAS 178

Query: 158 VVVCNGHFSVPRL 170
           +VV +G  S+P++
Sbjct: 179 LVVASGGKSIPKM 191

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 18/135 (13%)

Query: 99  YPGHEEVLRY-----LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153
             G  ++        L+    +F     + L   V +        +K+ + ++       
Sbjct: 58  VAGFPKIRAQELINNLKEQMAKFDQT--ICLEQAVESVEKQADGVFKLVTNEE-----TH 110

Query: 154 TFDAVVVCNGHFS-VPRLAQVPGIDSWPGKQMHSHNYRIPNP--FQDQVVILIGHYASGL 210
               V++  G+ +  PR  ++   + + GK +H   Y + +   F  + V ++G   S +
Sbjct: 111 YSKTVIITAGNGAFKPRKLELENAEQYEGKNLH---YFVDDLQKFAGRRVAILGGGDSAV 167

Query: 211 DIKRDLAGFAKEVHI 225
           D    L   AKEV I
Sbjct: 168 DWALMLEPIAKEVSI 182

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP 51
            V+G G +GL    +L   G  V++ E GE++GG   Y+ E+ + P
Sbjct: 4  AIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGR-AYSRESRNVP 49

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 15/37 (40%), Positives = 19/37 (51%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
             VIGAG  GL+    L + GH V V+E+    GG 
Sbjct: 2  KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGR 38

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 41/212 (19%), Positives = 78/212 (36%), Gaps = 16/212 (7%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKG----EQVGGSWIYTSETESDPLGVDPNRYP 60
           VA+IG G AG V G  L + GH V +YE+      +VG S +  + +  + LG+      
Sbjct: 26  VAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDA 85

Query: 61  VHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGH---EEVLRYLQNFAREFG 117
            +     S      ++   +    F     + +  +  +      EE  + L + AR  G
Sbjct: 86  QNYVKKPSATFLWGQDQAPW---TFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRG 142

Query: 118 VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS-VPRLAQVPGI 176
           +   V   T V +   +      V + ++         D V+   G    + R   V   
Sbjct: 143 IT--VHEETPVTDV-DLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKLGVRQY 199

Query: 177 DSWPGKQ-MHSHNYRIPNPFQDQVVILIGHYA 207
           D +     + S+ +++ +PF+  +        
Sbjct: 200 DEFYRNFAVWSY-FKLKDPFEGDLKGTTYSIT 230

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 46.3 bits (109), Expect = 4e-06
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 5  VAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
          + V+G+G  GL +   +  +    V+V E+   +GG+  Y+        G++ ++Y  H 
Sbjct: 10 LFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGN-AYSEAEPQT--GIEVHKYGAHL 66

Query: 64 SLYKSLRV 71
              + RV
Sbjct: 67 FHTSNKRV 74

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 46.0 bits (108), Expect = 6e-06
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 13/111 (11%)

Query: 1   MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEK-------GEQVGGSWIYTSETESDPLG 53
           M + + ++GAG AGL +G  L +    V VY         G ++  +  + + T    + 
Sbjct: 21  MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVA 80

Query: 54  VDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVAR--NYEGSVDLRRYPGH 102
           +D N +P     Y      +     G Q   F         +VD R Y   
Sbjct: 81  LDVNEWPSEEFGYFGHYYYVG----GPQPMRFYGDLKAPSRAVDYRLYQPM 127

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP 51
           V V+G G +G+     L   G  VVV E  ++VGG   YT   +   
Sbjct: 6  DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGR-TYTLRNQKVK 52

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 46.0 bits (108), Expect = 7e-06
 Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 1/114 (0%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
           V ++G+G  G     EL+  G+ V +++ GE   G  I   +  +     + +++  +  
Sbjct: 49  VVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFV-NVI 107

Query: 65  LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGV 118
             + + V++P   +        +               ++ LR L   A    V
Sbjct: 108 QGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVV 161

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38
          R   V G G AGL     L + G  V ++EK  ++ 
Sbjct: 12 RRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELR 47

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
          V V G G AG+    E  R G  V+V E+    GG+
Sbjct: 44 VVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGA 79

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45
           V V+GAG+AG        + G  V++ +K    GG+ + ++
Sbjct: 124 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISA 164

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 16/100 (16%)

Query: 135 ESNKWKVKSRKKDDVVEEETFDA--VVVC--NGHFSVPRLAQVPGIDSWPGKQMHSHNYR 190
           E + +KV + +         + A  V++    G F  PR    PG   + G+ ++   Y 
Sbjct: 94  EGDLFKVTTSQG------NAYTAKAVIIAAGVGAF-EPRRIGAPGEREFEGRGVY---YA 143

Query: 191 IPNP--FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228
           + +   FQ + V+++G   S +D   +L   A+ + +  R
Sbjct: 144 VKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHR 183

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 15/126 (11%)

Query: 4   HVAVIGAGAAGLVVGHELLR--------EGHTVVVYEKGEQVGGSWIYTSETESDPLGVD 55
            +A++G GA G+   +EL R         G  V +YE             +         
Sbjct: 58  RIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKA 117

Query: 56  PNRYPVHSSLYKSLRVNLPREL--MGFQA-----YPFVARNYEGSVDLRRYPGHEEVLRY 108
                           +   E+  M F       + + +  +  +  ++ +P   +V   
Sbjct: 118 GRVSAALVHNGDPASGDTIYEVGAMRFPEIAGLTWHYASAAFGDAAPIKVFPNPGKVPTE 177

Query: 109 LQNFAR 114
                R
Sbjct: 178 FVFGNR 183

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEK 33
          ++VA+IG G  GL +   L + G  V VYE+
Sbjct: 27 KNVAIIGGGPVGLTMAKLLQQNGIDVSVYER 57

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38
             VIGAG  GL     L + G    VYE  +++ 
Sbjct: 25 KAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIK 59

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEK 33
            +AV+G   +GL     L   G  V VYE+
Sbjct: 6  DRIAVVGGSISGLTAALMLRDAGVDVDVYER 36

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38
            VIGAG  GL +   L   GH V+V E  E +G
Sbjct: 7  CIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIG 40

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 41/184 (22%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP--LGVDPNRYPVH 62
           VA+IGAG +GL++G  L + G   V+ E+                      ++       
Sbjct: 5   VAIIGAGPSGLLLGQLLHKAGIDNVILERQTP--------DYVLGRIRAGVLEQG----- 51

Query: 63  SSLYKSLRV--------NLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQ---- 110
                 + +         + R+ +  +            +DL+R  G + V  Y Q    
Sbjct: 52  -----MVDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVT 106

Query: 111 -----NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHF 165
                           V    EV    L +  +  V + ++D        D +  C+G  
Sbjct: 107 RDLMEAREACGAT--TVYQAAEVRLHDL-QGERPYV-TFERDGERLRLDCDYIAGCDGFH 162

Query: 166 SVPR 169
            + R
Sbjct: 163 GISR 166

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34
          + V V+G+G  GL     L R+G++V +  + 
Sbjct: 7  KRVVVLGSGVIGLSSALILARKGYSVHILARD 38

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 39/283 (13%), Positives = 76/283 (26%), Gaps = 90/283 (31%)

Query: 21  LLREGHTVV--VYEKGEQVGGSWIYTS---------------ETESDPLGVDPNRYPVHS 63
           LL +   +V    E+  ++   ++ +                  + D L  D   +  ++
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 64  ----SLYKSLRVNLPREL----------M-GF----------QAYPFVARNYEGS--VDL 96
                 Y  LR  L  EL          + G            +Y    +       ++L
Sbjct: 131 VSRLQPYLKLRQAL-LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 97  RRYPGHEEVLRYLQNFAREFGVDQV--------VRLHTEVLNARLVESNKWKVKSRKK-- 146
           +     E VL  LQ    +   +          ++L    + A L      K K  +   
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--RRLLKSKPYENCL 247

Query: 147 ---DDVVEEETFDAVVVCNGHFSVP-------RLAQVPGIDSWPGKQMHSHNYRIPNPFQ 196
               +V   + ++A       F++        R  QV   D                   
Sbjct: 248 LVLLNVQNAKAWNA-------FNLSCKILLTTRFKQV--TDFLSAATT------------ 286

Query: 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP 239
               I + H++  L      +   K +    + +  E     P
Sbjct: 287 --THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
           V +IG+G AGL         G  V++ EK    GG+
Sbjct: 129 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN 164

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
           V V+G+G AG          G  V++ EK   +GG+
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN 164

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 42.4 bits (98), Expect = 6e-05
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 4  HVAVIGAGAAGLVVGHELLREGH---TVVVYEKGEQVGGSWIYTSETESDP 51
           V ++GAG  G +    L R+      + V++K +  GG  + T+ +  +P
Sbjct: 3  QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGG-RMTTACSPHNP 52

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 42.6 bits (100), Expect = 7e-05
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 5/117 (4%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
            V VIG G  GL    +L   G   ++ E  +++GG   ++S  +  P  +       H 
Sbjct: 41  DVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGR-SWSSNIDGYPYEMGGTWVHWHQ 99

Query: 64  SLYKSL--RVNLPRELMGFQAYPFVARNYEG--SVDLRRYPGHEEVLRYLQNFAREF 116
           S       R  +   L     +     +++   +     Y  HE     L++   +F
Sbjct: 100 SHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKF 156

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 42.4 bits (99), Expect = 8e-05
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 5   VAVIGAGAAGLVVGHEL--LREGHTVVVYEKGEQVGG-SWIY 43
           + ++GAG+ GL   + L  LR    + + E G   GG +W+ 
Sbjct: 82  IVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLG 123

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 42.7 bits (99), Expect = 8e-05
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
             V +IG+G +GL    +L   G  V + E  ++VGG
Sbjct: 279 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 315

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 42.6 bits (99), Expect = 9e-05
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
             V +IG+G +GL    +L   G  V + E  ++VGG
Sbjct: 108 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGE---QVGGSW 41
          V V+G G  GL    ++   GH V+V E+     + GG+ 
Sbjct: 7  VVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTS 46

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 4  HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGG 39
           V V+GAG +G+     L   G   +++ E  + +GG
Sbjct: 6  RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG 42

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 29/183 (15%), Positives = 46/183 (25%), Gaps = 58/183 (31%)

Query: 3   RHVAVIGAGAAGLVVGHELLR--EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP 60
           +HV VIGA A G        R      V + ++           S               
Sbjct: 4   KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQAS-------RIS--------------- 41

Query: 61  VHSS----LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF 116
            +       Y S  V+    L        V R+ E                    F    
Sbjct: 42  -YGGCGIPYYVSGEVSNIESL--QATPYNVVRDPEF-------------------FRINK 79

Query: 117 GVDQVVRLHTEVLNARLVESNKWKVKSR-KKDDVVEEETFDAVVVCNGHFSVPRLAQVPG 175
            V+    + T       ++     V+    +        +D +V+  G  S      V G
Sbjct: 80  DVE--ALVETRAHA---IDRAAHTVEIENLRTGERRTLKYDKLVLALG--SKANRPPVEG 132

Query: 176 IDS 178
           +D 
Sbjct: 133 MDL 135

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 5  VAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGG 39
          V V+GAG+AGL   +E+ +     V + E+    GG
Sbjct: 42 VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGG 77

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 41.7 bits (97), Expect = 1e-04
 Identities = 35/198 (17%), Positives = 56/198 (28%), Gaps = 35/198 (17%)

Query: 5   VAVIGAGAAGLVVGHEL--LREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           + VIGAG AGLV   +L   R    + + EK +          E E    GV     P  
Sbjct: 3   ILVIGAGPAGLVFASQLKQARPLWAIDIVEKND----------EQEVLGWGVVLPGRPGQ 52

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRY-----LQNFAREFG 117
                   ++ P  L       F   ++     +        V R      L++  R  G
Sbjct: 53  HPANPLSYLDAPERLNPQFLEDFKLVHHNEPSLMSTGVLLCGVERRGLVHALRDKCRSQG 112

Query: 118 VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
           +   +R  + +L                    +    +D VV+ NG            + 
Sbjct: 113 IA--IRFESPLLE----------------HGELPLADYDLVVLANGVNHKTAHFTEALVP 154

Query: 178 SWPGKQMHSHNYRIPNPF 195
                +     Y     F
Sbjct: 155 QVDYGRNKYIWYGTSQLF 172

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 27/173 (15%), Positives = 52/173 (30%), Gaps = 28/173 (16%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGE-------QVGGSWIYTSETESDPLGVDPN 57
           V +IG G AG    ++L R G  +++ +            G +       +         
Sbjct: 9   VLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGE 68

Query: 58  RYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVL-RYLQNFAREF 116
              + + +   +++  P              N EG   L        +  + +   A++ 
Sbjct: 69  --ELENKI-NGIKLYSPDM------QTVWTVNGEGFE-LNA-----PLYNQRVLKEAQDR 113

Query: 117 GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF--DAVVVCNGHFSV 167
           GV+  +   T  +   + E    K          EE T     VV   G+   
Sbjct: 114 GVE--IWDLTTAMKP-IFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS 163

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ--VGGSW 41
          V V+GAG+ G+  G++L ++G   ++ +  +     GS 
Sbjct: 6  VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSH 44

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
            VIG G  G  + + L +E     ++E G   G +
Sbjct: 20 AVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRT 55

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 5   VAVIGAGAAGLVVGHEL--LREGHTVVVYEKGEQVGG 39
           V ++GAG++GL   + +   R    V + E     GG
Sbjct: 68  VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG 104

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 3  RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESD 50
          + V +IGAG AGL     L + G    +V E  ++VGG  + T      
Sbjct: 9  KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGR-LQTVTGYQG 56

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score = 40.3 bits (93), Expect = 4e-04
 Identities = 12/74 (16%), Positives = 25/74 (33%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
          V ++G G    ++   L   G  ++V ++    GG     + T            P    
Sbjct: 23 VIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYG 82

Query: 65 LYKSLRVNLPRELM 78
            +   V+L  + +
Sbjct: 83 ENRHWNVDLIPKFI 96

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEK 33
           V VIGAG  GL     +    H+V+    
Sbjct: 2  RVVVIGAGVIGLSTALCIHERYHSVLQPLD 31

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEK---GEQVGGSW 41
          + +IG+G+ G   G+   R G  V++ +      Q G   
Sbjct: 5  LIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHH 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	100.0
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	100.0
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.97
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.97
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.97
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.97
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.97
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.95
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.95
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.95
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.95
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.94
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.94
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.94
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.94
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.94
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.94
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.94
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.94
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.93
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.93
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.93
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.93
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.93
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.93
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.93
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.93
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.93
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.9
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.9
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.89
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.89
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.89
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.88
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.88
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.88
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.88
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.88
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.88
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.88
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.88
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.88
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.88
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.87
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.87
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.87
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.87
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.87
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.87
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.87
4dna_A	463	Probable glutathione reductase; structural genomic	99.87
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.87
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.86
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.86
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.86
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.86
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.86
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.86
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.86
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.85
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.85
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.85
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.85
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.85
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.85
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.85
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.85
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.84
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.84
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.84
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.84
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.83
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.83
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.83
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.83
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.83
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.82
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.82
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.82
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.81
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.81
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.81
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.8
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.8
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.77
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.75
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.75
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.73
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.72
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.7
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.68
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.67
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.64
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.62
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.61
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.6
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.59
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.58
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.58
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.57
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.57
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.56
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.56
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.56
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.55
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.55
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.54
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.54
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.53
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.53
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.51
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.5
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.5
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.49
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.49
3dme_A	369	Conserved exported protein; structural genomics, P	99.49
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.49
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.49
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.49
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.48
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.48
3atr_A	453	Conserved archaeal protein; saturating double bond	99.48
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.48
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.48
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.47
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.47
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.45
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.44
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.43
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.43
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.42
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.41
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.41
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.41
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.41
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.41
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.41
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.4
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.39
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.38
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.38
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.38
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.37
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.36
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.36
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.36
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.35
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.35
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.35
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.33
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.32
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.31
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.29
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.28
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.28
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	99.28
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.28
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.27
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.27
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.26
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.26
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.25
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.25
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.23
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.22
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.2
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.2
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.19
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.18
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.17
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.14
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.14
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.13
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.12
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.11
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.07
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.07
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.05
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.04
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.03
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.02
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.01
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.01
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.01
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.99
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.99
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.99
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.99
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.99
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.98
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.97
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.97
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.97
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.97
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.96
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.96
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.96
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.95
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.95
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.94
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.93
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.93
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.93
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.92
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.91
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.91
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.91
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.89
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.89
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.89
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.88
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.88
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.87
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.87
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.86
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.85
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.82
4dna_A	463	Probable glutathione reductase; structural genomic	98.8
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.78
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.78
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.77
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.76
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.76
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.76
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.75
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.75
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.75
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.74
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.73
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.73
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.72
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.72
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.71
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	98.71
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.7
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.69
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.68
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.68
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.67
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.67
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.67
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.66
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.64
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.64
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.64
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.63
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.63
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.63
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.62
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.62
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.61
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.6
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.6
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.59
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.58
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.56
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.55
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.55
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.54
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.53
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.52
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.51
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.5
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.47
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.46
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.44
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.39
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.38
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.37
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.37
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.34
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.31
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.3
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	98.12
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.12
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.09
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.05
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.0
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.99
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.97
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.96
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.96
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.95
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.94
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.94
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.93
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.91
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.87
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.87
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.85
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.83
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.79
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.74
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.72
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.72
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.66
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.66
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.38
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.38
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.35
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.3
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.14
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.13
4fk1_A	304	Putative thioredoxin reductase; structural genomic	97.1
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.09
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.06
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.05
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.05
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.92
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.84
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	96.83
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.81
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.71
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	96.69
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.64
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.63
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.61
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.58
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.56
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.56
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.53
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.53
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	96.52
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.51
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.51
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.48
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.47
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.46
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	96.45
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	96.45
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.4
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.36
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.34
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.34
2cul_A	232	Glucose-inhibited division protein A-related PROT	96.33
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.33
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.33
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.32
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.3
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.29
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.28
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	96.28
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.28
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	96.27
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.26
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.23
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	96.21
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.21
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	96.2
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	96.19
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.18
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.18
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	96.18
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	96.17
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	96.17
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.17
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.16
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.1
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.09
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.09
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	96.08
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.07
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.07
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.06
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.05
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.04
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.03
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.03
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.02
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	96.01
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.0
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.0
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.99
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	95.96
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.94
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	95.92
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.88
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	95.87
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	95.86
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.86
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.85
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.85
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.84
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	95.83
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.82
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	95.82
4hb9_A	412	Similarities with probable monooxygenase; flavin,	95.81
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	95.81
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	95.8
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	95.78
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.78
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	95.77
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.76
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	95.76
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	95.76
2bry_A	497	NEDD9 interacting protein with calponin homology a	95.76
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	95.75
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	95.74
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.74
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.73
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	95.67
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.66
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.66
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	95.66
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	95.64
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	95.62
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	95.6
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	95.6
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	95.6
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	95.58
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.58
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	95.57
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.56
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	95.54
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.54
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.53
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	95.52
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	95.52
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	95.5
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.49
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	95.49
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.48
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	95.47
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	95.47
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	95.46
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	95.44
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	95.42
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.41
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.4
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	95.37
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	95.36
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	95.36
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	95.34
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	95.32
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	95.31
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	95.3
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.29
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	95.29
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	95.28
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	95.26
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	95.26
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	95.24
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.23
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.22
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	95.21
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.21
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.2
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.19
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	95.19
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.18
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.17
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.16
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.16
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	95.15
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	95.15
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	95.15
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	95.14
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	95.14
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.13
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.13
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.13
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	95.11
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	95.11
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	95.11
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	95.09
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.08
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	95.07
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	95.07
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	95.06
3dme_A	369	Conserved exported protein; structural genomics, P	95.05
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	95.05
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	95.04
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	95.04
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	95.03
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.02
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	95.02
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.0
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	94.99
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	94.99
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	94.97
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	94.97
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	94.96
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	94.95
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	94.94
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	94.94
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	94.94
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	94.93
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	94.93
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	94.92
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	94.91
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	94.9
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	94.89
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	94.89
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	94.87
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	94.87
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	94.84
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	94.83
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	94.83
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	94.83

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=100.00  E-value=1.7e-33  Score=234.02  Aligned_cols=244  Identities=30%  Similarity=0.503  Sum_probs=190.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHH---cCCc---EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLR---EGHT---VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP   74 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~---~g~~---v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (259)
                      |.+||+|||||++|+++|..|++   .|.+   |+|||+.+.+||.|.+.......+.+     ....+..|..+..+.+
T Consensus         1 M~~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g-----~~~~~~~y~~l~~~~~   75 (464)
T 2xve_A            1 MATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENG-----EPVHSSMYRYLWSNGP   75 (464)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTS-----SBCCCCCCTTCBCSSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccC-----CCCcCccccchhhcCC
Confidence            66899999999999999999999   9999   99999999999999875432221111     1223456666777777


Q ss_pred             cccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC-CcEEEEEEecC-CceEE
Q 024975           75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKD-DVVEE  152 (259)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~-~~~~~  152 (259)
                      ...+.+.++++...   ...+...|+++.++.+|+.+++++++++..++++++|++++..++ +.|.|.+.++. +....
T Consensus        76 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~  152 (464)
T 2xve_A           76 KECLEFADYTFDEH---FGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYS  152 (464)
T ss_dssp             GGGTCBTTBCHHHH---HSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             hhhcccCCCCCCcc---cCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEE
Confidence            77777766665432   012346788889999999999999998766889999999998763 37999988742 33457


Q ss_pred             EEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCc
Q 024975          153 ETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD  232 (259)
Q Consensus       153 ~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~  232 (259)
                      +.||+||+|||+++.|+.|.++|.+.|.+...++..+.....+.+++|+|||+|.+|+|+|..|.+.+.+|++++|++..
T Consensus       153 ~~~d~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~  232 (464)
T 2xve_A          153 EEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP  232 (464)
T ss_dssp             EEESEEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred             EEcCEEEECCCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence            89999999999999999999999998889899998888777677899999999999999999999999999999998742


Q ss_pred             ccccCCCCCCCceEeeeeeEEee
Q 024975          233 ETHEKQPGYDNMWLHSMVRTKKC  255 (259)
Q Consensus       233 ~~~~~~~~~~~~~~~~~v~~~~~  255 (259)
                      . ...+.  .++++.+.|+++++
T Consensus       233 ~-~~~~~--~~V~~~~~V~~i~~  252 (464)
T 2xve_A          233 M-GYKWP--ENWDERPNLVRVDT  252 (464)
T ss_dssp             C-CCCCC--TTEEECSCEEEECS
T ss_pred             C-CCCCC--CceEEcCCeEEEeC
Confidence            1 11122  36666677777754

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=100.00  E-value=3.2e-32  Score=225.83  Aligned_cols=237  Identities=30%  Similarity=0.531  Sum_probs=181.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCC------CC--------CCccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDP------NR--------YPVHSSL   65 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~------~~--------~~~~~~~   65 (259)
                      .+||+|||||++|+++|..|++.|.  +|+|||+.+.+||.|.+...... ......      ..        ....+..
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~-~~~ip~~~~~~~~~~~~~g~~~~~~~~~~   84 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSN-KLPVPSTNPILTTEPIVGPAALPVYPSPL   84 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCS-CCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCc-ccccccccccccccccccccccCCccCch
Confidence            4799999999999999999999999  99999999999999977532110 000000      00        0012334


Q ss_pred             cccceeccccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEe
Q 024975           66 YKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK  145 (259)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~  145 (259)
                      |..+..+.+...+.+.++++..       ....|+++..+.+|+.+++.+++..  ++++++|++++..+ +.|.|++.+
T Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~--i~~~t~V~~v~~~~-~~~~V~~~~  154 (447)
T 2gv8_A           85 YRDLQTNTPIELMGYCDQSFKP-------QTLQFPHRHTIQEYQRIYAQPLLPF--IKLATDVLDIEKKD-GSWVVTYKG  154 (447)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCT-------TCCSSCBHHHHHHHHHHHHGGGGGG--EECSEEEEEEEEET-TEEEEEEEE
T ss_pred             hhhhccCCCHHHhccCCCCCCC-------CCCCCCCHHHHHHHHHHHHHHhhCe--EEeCCEEEEEEeCC-CeEEEEEee
Confidence            5555555555555555555432       3457888899999999999888776  89999999998875 779999876


Q ss_pred             cC-Cc-eEEEEeCEEEEccCCCCCCccCCCCCCCCC----CCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcc
Q 024975          146 KD-DV-VEEETFDAVVVCNGHFSVPRLAQVPGIDSW----PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGF  219 (259)
Q Consensus       146 g~-~~-~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~  219 (259)
                      .. +. ...+.||+||+|||+++.|++|.++|.+.+    .+...|+..+.....+.+++|+|||+|++|+|+|..|.+.
T Consensus       155 ~~~G~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~~~  234 (447)
T 2gv8_A          155 TKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPV  234 (447)
T ss_dssp             SSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTT
T ss_pred             cCCCCeeEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHHHH
Confidence            21 22 347899999999999889999999997653    5678888888877767789999999999999999999999


Q ss_pred             cCe-EEEEecCCCcccccCCCCCCCceEeeeeeEEee
Q 024975          220 AKE-VHIASRSVADETHEKQPGYDNMWLHSMVRTKKC  255 (259)
Q Consensus       220 ~~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~  255 (259)
                      +.+ |++++|++..      +...++...+.|+++++
T Consensus       235 ~~~~V~l~~r~~~~------l~~~~i~~~~~v~~~~~  265 (447)
T 2gv8_A          235 AKHPIYQSLLGGGD------IQNESLQQVPEITKFDP  265 (447)
T ss_dssp             SCSSEEEECTTCCS------CBCSSEEEECCEEEEET
T ss_pred             hCCcEEEEeCCCCc------CCCCCeEEecCeEEEec
Confidence            998 9999998743      33457777888888753

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.97  E-value=3e-31  Score=223.83  Aligned_cols=202  Identities=28%  Similarity=0.431  Sum_probs=159.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+||+|||||++|+++|..|.+.|++|+|+|+++.+||+|..+.                    |.......+...+.+.
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~--------------------yPg~~~d~~~~~y~~~   68 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNR--------------------YPGCRLDTESYAYGYF   68 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCC--------------------CTTCBCSSCHHHHCHH
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCC--------------------CCceeecCchhhcccc
Confidence            36999999999999999999999999999999999999996531                    1111111111111111


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC-CcEEEEEEecCCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                      ..+   .......+...|+.+.++..|+.+.++++++...++++++|++++..++ +.|.|.+.+|.    .+.||+||+
T Consensus        69 f~~---~~~~~~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~----~~~ad~lV~  141 (545)
T 3uox_A           69 ALK---GIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEE----VVTCRFLIS  141 (545)
T ss_dssp             HHT---TSSTTCCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTE----EEEEEEEEE
T ss_pred             cCc---ccccCCCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCC----EEEeCEEEE
Confidence            000   0001123456778889999999999999998545999999999998653 57999987754    799999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCCceEEcccCCCC-------CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       161 AtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |||.++.|+.|.+||.+.|.+...|+..+...       ....+++|+|||+|.+|+|+|..|.+.+.+|++++|++
T Consensus       142 AtG~~s~p~~p~ipG~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~  218 (545)
T 3uox_A          142 ATGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTP  218 (545)
T ss_dssp             CCCSCBC---CCCTTGGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSC
T ss_pred             CcCCCCCCcCCCCCCccccCCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCC
Confidence            99998899999999999999999999887765       66778999999999999999999999999999999998

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.97  E-value=3.1e-31  Score=223.89  Aligned_cols=202  Identities=27%  Similarity=0.426  Sum_probs=161.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ++||+|||||++|+++|..|.+.|++|+|+|+++.+||+|..+.                    |.......+...+.+.
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~--------------------ypg~~~dv~s~~y~~~   80 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNR--------------------YPGARCDVESIDYSYS   80 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCC--------------------CTTCBCSSCTTTSSCC
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCC--------------------CCCceeCCCchhcccc
Confidence            36999999999999999999999999999999999999997542                    0011111111111110


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC-CcEEEEEEecCCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                         +.........+...|+.+.++..|+.+.++++++...++++++|++++..++ ..|.|.+.+|.    .+.||+||+
T Consensus        81 ---f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~----~i~ad~lV~  153 (549)
T 4ap3_A           81 ---FSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGD----EVSARFLVV  153 (549)
T ss_dssp             ---SCHHHHHHCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCC----EEEEEEEEE
T ss_pred             ---cccccccCCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCC----EEEeCEEEE
Confidence               0000000013445678889999999999999998444999999999998763 47999988765    799999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCCceEEcccCC-CCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       161 AtG~~s~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |||.++.|+.|.+||.+.|.+..+|+..+. ......+++|+|||+|.+|+|+|..|.+.+.+|++++|++
T Consensus       154 AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~  224 (549)
T 4ap3_A          154 AAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSA  224 (549)
T ss_dssp             CCCSEEECCCCCCTTGGGCCSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CcCCCCCCCCCCCCCcccCCCceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCC
Confidence            999888999999999999999999999888 5667788999999999999999999999999999999998

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.97  E-value=2.4e-31  Score=224.24  Aligned_cols=201  Identities=24%  Similarity=0.415  Sum_probs=161.7

Q ss_pred             CeEEEECCChHHHHHHHHHH-HcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            3 RHVAVIGAGAAGLVVGHELL-REGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~-~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +||+|||||++|+++|..|+ +.|.+|+|+|+++.+||+|..+.                    |.......+...+.+.
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~--------------------ypg~~~d~~s~~~~~~   68 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNR--------------------YPGALSDTESHLYRFS   68 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCC--------------------CTTCEEEEEGGGSSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccC--------------------CCCceecCCcceeeec
Confidence            69999999999999999999 89999999999999999997531                    1111111111111111


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC-CcEEEEEEecCCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                         +.........+...|+.+.++.+|+.+.++++++...++++++|++++..++ +.|.|.+.+|.    .+.||+||+
T Consensus        69 ---~~~~~~~~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~----~i~ad~lV~  141 (540)
T 3gwf_A           69 ---FDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGE----VYRAKYVVN  141 (540)
T ss_dssp             ---SCHHHHHHCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSC----EEEEEEEEE
T ss_pred             ---cccccccCCCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCC----EEEeCEEEE
Confidence               0000000012344567789999999999999998444999999999998764 47999988765    789999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       161 AtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |||.++.|+.|++||.+.|.+...|+..+.......+++|+|||+|.+|+|+|..|.+.+.+|++++|++
T Consensus       142 AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~  211 (540)
T 3gwf_A          142 AVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTP  211 (540)
T ss_dssp             CCCSCCSBCCCCCTTGGGCCSEEEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSC
T ss_pred             CCcccccCCCCCCCCccccCCCEEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCC
Confidence            9999899999999999999999999998888777889999999999999999999999999999999998

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.97  E-value=2.3e-30  Score=208.83  Aligned_cols=192  Identities=26%  Similarity=0.448  Sum_probs=158.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ++||+|||||++|+++|..|+++|++|+|+|+.+.+||.|...                     +..+....+.....+.
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~---------------------~~~~~~~~~~~~~~~~   61 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHA---------------------WHSLHLFSPAGWSSIP   61 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGS---------------------CTTCBCSSCGGGSCCS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCC---------------------CCCcEecCchhhhhCC
Confidence            4799999999999999999999999999999999999998752                     1112222222222222


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEE-EEEEecCCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~-v~~~~g~~~~~~~~ad~VIl  160 (259)
                      .++..       .....|+.+.++..++.+.+++.+++  ++++++|++++..+ +.|. |.+.++     .+.||+||+
T Consensus        62 ~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~~-~~~~~v~~~~g-----~~~~d~vV~  126 (357)
T 4a9w_A           62 GWPMP-------ASQGPYPARAEVLAYLAQYEQKYALP--VLRPIRVQRVSHFG-ERLRVVARDGR-----QWLARAVIS  126 (357)
T ss_dssp             SSCCC-------CCSSSSCBHHHHHHHHHHHHHHTTCC--EECSCCEEEEEEET-TEEEEEETTSC-----EEEEEEEEE
T ss_pred             CCCCC-------CCccCCCCHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEECC-CcEEEEEeCCC-----EEEeCEEEE
Confidence            22221       23456778899999999999999999  99999999999876 6787 776553     699999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       161 AtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |||.++.|.+|.++|...+.+...+...+.......+++|+|||+|.+|+|+|..|.+.+ +|++++|++
T Consensus       127 AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          127 ATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             CCCSGGGBCCCCCTTGGGCCSEEEEGGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CCCCCCCCCCCCCCCccccCCcEEEeccCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            999888888999999988888889988888877778899999999999999999999998 599999985

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.97  E-value=1.8e-29  Score=213.71  Aligned_cols=202  Identities=29%  Similarity=0.478  Sum_probs=156.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+||+|||||++|+++|..|++.|++|+|+|+++.+||+|..+..         +.           .....+...+.+.
T Consensus        16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~---------pg-----------~~~d~~~~~~~~~   75 (542)
T 1w4x_A           16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRY---------PG-----------ARCDIESIEYCYS   75 (542)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCC---------TT-----------CBCSSCTTTSSCC
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCC---------Cc-----------eeecccccccccc
Confidence            369999999999999999999999999999999999999964310         00           0000000000000


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC-CcEEEEEEecCCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                         +.........+...|+.+.++.+|+.+.++++++...++++++|++++..++ +.|.|.+++|.    .++||+||+
T Consensus        76 ---f~~~~~~~~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~----~~~ad~vV~  148 (542)
T 1w4x_A           76 ---FSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGD----RIRARYLIM  148 (542)
T ss_dssp             ---SCHHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCC----EEEEEEEEE
T ss_pred             ---cChhhhhccCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCC----EEEeCEEEE
Confidence               0000000012334577889999999999988875445999999999998753 47999887654    789999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCCceEEcccCC-CCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       161 AtG~~s~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |||.++.|+.|+++|++.|.+..+|+..+. ......+++|+|||+|.+|+|++..+.+.+.+|++++|++
T Consensus       149 AtG~~s~p~~p~i~G~~~f~G~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~  219 (542)
T 1w4x_A          149 ASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP  219 (542)
T ss_dssp             CCCSCCCCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CcCCCCCCCCCCCCCcccCCCceEECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCC
Confidence            999999999999999998999999998877 4456678999999999999999999999999999999987

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.95  E-value=7.3e-28  Score=191.60  Aligned_cols=199  Identities=20%  Similarity=0.212  Sum_probs=151.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ++||+|||||++|+++|..|.+.|.+|+|+|++  +||.|.....                              ...+.
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~------------------------------~~~~~   62 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGI------------------------------VDDYL   62 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCE------------------------------ECCST
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeeccccc------------------------------ccccC
Confidence            479999999999999999999999999999998  8888764210                              00000


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .+              ......++..++.+.+.+.+++  ++. ++|+++...+ +.|.+.+.++.    .+.+|+||+|
T Consensus        63 ~~--------------~~~~~~~~~~~~~~~~~~~~v~--~~~-~~v~~i~~~~-~~~~v~~~~g~----~~~~d~lvlA  120 (323)
T 3f8d_A           63 GL--------------IEIQASDMIKVFNKHIEKYEVP--VLL-DIVEKIENRG-DEFVVKTKRKG----EFKADSVILG  120 (323)
T ss_dssp             TS--------------TTEEHHHHHHHHHHHHHTTTCC--EEE-SCEEEEEEC---CEEEEESSSC----EEEEEEEEEC
T ss_pred             CC--------------CCCCHHHHHHHHHHHHHHcCCE--EEE-EEEEEEEecC-CEEEEEECCCC----EEEcCEEEEC
Confidence            01              1123478899999999999998  787 8999999875 77888887755    7999999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC----cccccC
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEK  237 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~----~~~~~~  237 (259)
                      ||  +.++.|.++|...+.+...+...........+++++|+|+|.+|+|+|..|.+.+.+|++++|.+.    +++.++
T Consensus       121 tG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~  198 (323)
T 3f8d_A          121 IG--VKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVET  198 (323)
T ss_dssp             CC--CEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCSCHHHHHH
T ss_pred             cC--CCCccCCCCchhhhcCCceEEeccCCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCcCHHHHHH
Confidence            99  568888999988776655554444443445679999999999999999999999999999999982    345555


Q ss_pred             CCCCCCceE--eeeeeEEeec
Q 024975          238 QPGYDNMWL--HSMVRTKKCS  256 (259)
Q Consensus       238 ~~~~~~~~~--~~~v~~~~~~  256 (259)
                      +.+..++.+  ++.|++++..
T Consensus       199 ~~~~~gv~~~~~~~v~~i~~~  219 (323)
T 3f8d_A          199 VKKKPNVEFVLNSVVKEIKGD  219 (323)
T ss_dssp             HHTCTTEEEECSEEEEEEEES
T ss_pred             HHhCCCcEEEeCCEEEEEecc
Confidence            555445555  4667777654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.95  E-value=7.8e-27  Score=185.97  Aligned_cols=202  Identities=22%  Similarity=0.281  Sum_probs=148.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ++||+||||||+|+++|..|.+.|.+|+|+|+. .+||.|......                              ..+.
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~------------------------------~~~~   56 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSEEV------------------------------ENFP   56 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSCB------------------------------CCST
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccccccc------------------------------ccCC
Confidence            379999999999999999999999999999998 688877642100                              0000


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEe--CCCcEEEEEEecCCceEEEEeCEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV--ESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~--~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                      .++             ....+.++..++.+.+.+.+++  ++. .+|+++...  ++..|.+.+.++.    .+.+|+||
T Consensus        57 ~~~-------------~~~~~~~~~~~l~~~~~~~gv~--~~~-~~v~~i~~~~~~~~~~~v~~~~g~----~~~~~~vv  116 (325)
T 2q7v_A           57 GFP-------------EPIAGMELAQRMHQQAEKFGAK--VEM-DEVQGVQHDATSHPYPFTVRGYNG----EYRAKAVI  116 (325)
T ss_dssp             TCS-------------SCBCHHHHHHHHHHHHHHTTCE--EEE-CCEEEEEECTTSSSCCEEEEESSC----EEEEEEEE
T ss_pred             CCC-------------CCCCHHHHHHHHHHHHHHcCCE--EEe-eeEEEEEeccCCCceEEEEECCCC----EEEeCEEE
Confidence            000             0123478888999999889998  776 689999876  4222888777654    79999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC----cccc
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETH  235 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~----~~~~  235 (259)
                      +|||  +.|+.|.++|...+.+...+...+.......+++++|+|+|.+|+|+|..|.+.+.+|++++|++.    +.+.
T Consensus       117 ~AtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~  194 (325)
T 2q7v_A          117 LATG--ADPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRANKVAQ  194 (325)
T ss_dssp             ECCC--EEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHH
T ss_pred             ECcC--CCcCCCCCCChhhccCceEEEeccCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCcchHHH
Confidence            9999  578888889887665544444332222334568999999999999999999999999999999872    3344


Q ss_pred             cCCCCCCCceE--eeeeeEEeec
Q 024975          236 EKQPGYDNMWL--HSMVRTKKCS  256 (259)
Q Consensus       236 ~~~~~~~~~~~--~~~v~~~~~~  256 (259)
                      +++.+..++.+  ++.|+++...
T Consensus       195 ~~l~~~~gv~i~~~~~v~~i~~~  217 (325)
T 2q7v_A          195 ARAFANPKMKFIWDTAVEEIQGA  217 (325)
T ss_dssp             HHHHTCTTEEEECSEEEEEEEES
T ss_pred             HHHHhcCCceEecCCceEEEccC
Confidence            55544445554  4677777653

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.95  E-value=4.1e-27  Score=186.54  Aligned_cols=173  Identities=23%  Similarity=0.258  Sum_probs=126.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .|||+||||||+|++||.+|+++|++|+|||+. .+||+|....        +.+                      .++
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~~~~--------~i~----------------------~~p   54 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMANTE--------EVE----------------------NFP   54 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCS--------CBC----------------------CST
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeeeccc--------ccC----------------------CcC
Confidence            489999999999999999999999999999995 5888876431        100                      000


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .+              ......++.........+....  +.....+......  . ..+...++    ..++||+||+|
T Consensus        55 ~~--------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~-~~~~~~~~----~~~~~d~liiA  111 (312)
T 4gcm_A           55 GF--------------EMITGPDLSTKMFEHAKKFGAV--YQYGDIKSVEDKG--E-YKVINFGN----KELTAKAVIIA  111 (312)
T ss_dssp             TC--------------SSBCHHHHHHHHHHHHHHTTCE--EEECCCCEEEECS--S-CEEEECSS----CEEEEEEEEEC
T ss_pred             Cc--------------cccchHHHHHHHHHHHhhcccc--ccceeeeeeeeee--c-ceeeccCC----eEEEeceeEEc
Confidence            01              1112356666666666666665  5555554444322  2 23333333    37999999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ||  +.|+.|++||...+.+...+.....+....++++++|||+|++|+|+|..|.+.+.+||+++|++
T Consensus       112 tG--s~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  178 (312)
T 4gcm_A          112 TG--AEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRD  178 (312)
T ss_dssp             CC--EEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             cc--CccCcCCCCChhhhCCccEEeeeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccc
Confidence            99  78999999999887666665544444445567999999999999999999999999999999988

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.95  E-value=1.6e-27  Score=190.33  Aligned_cols=205  Identities=18%  Similarity=0.207  Sum_probs=152.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ++||+|||||++|+++|..|++.|.+|+|+|+.+.+||.|....                     ....      ...+.
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~---------------------~~~~------~~~~~   59 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALY---------------------PEKY------IYDVA   59 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHC---------------------TTSE------ECCST
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcC---------------------CCce------EeccC
Confidence            37999999999999999999999999999999999999885310                     0000      00000


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .++              .....++..++.+.+.+.+++  ++++++|+++....++.|.|.+.++     .+.+|+||+|
T Consensus        60 ~~~--------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~v~~~~g-----~~~~d~vVlA  118 (332)
T 3lzw_A           60 GFP--------------KIRAQELINNLKEQMAKFDQT--ICLEQAVESVEKQADGVFKLVTNEE-----THYSKTVIIT  118 (332)
T ss_dssp             TCS--------------SEEHHHHHHHHHHHHTTSCCE--EECSCCEEEEEECTTSCEEEEESSE-----EEEEEEEEEC
T ss_pred             CCC--------------CCCHHHHHHHHHHHHHHhCCc--EEccCEEEEEEECCCCcEEEEECCC-----EEEeCEEEEC
Confidence            111              123488999999999888888  8999999999987644799988764     4899999999


Q ss_pred             cCCCC-CCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCc----cccc
Q 024975          162 NGHFS-VPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----ETHE  236 (259)
Q Consensus       162 tG~~s-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~----~~~~  236 (259)
                      ||..+ .|+.|.++|...+.+...+. .+......++++++|+|+|.+|+|+|..|.+.+.+|++++|.+..    ...+
T Consensus       119 tG~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~  197 (332)
T 3lzw_A          119 AGNGAFKPRKLELENAEQYEGKNLHY-FVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVE  197 (332)
T ss_dssp             CTTSCCEECCCCCTTGGGGBTTTEES-SCSCGGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSCHHHHH
T ss_pred             CCCCcCCCCCCCCCChhhccCceEEE-ecCCHHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCccHHHHH
Confidence            99533 78888899988766666665 454445556899999999999999999999999999999998831    1122


Q ss_pred             CCCCCCCceE--eeeeeEEeec
Q 024975          237 KQPGYDNMWL--HSMVRTKKCS  256 (259)
Q Consensus       237 ~~~~~~~~~~--~~~v~~~~~~  256 (259)
                      ++ ...++.+  ++.|++++..
T Consensus       198 ~l-~~~gv~~~~~~~v~~i~~~  218 (332)
T 3lzw_A          198 NL-HASKVNVLTPFVPAELIGE  218 (332)
T ss_dssp             HH-HHSSCEEETTEEEEEEECS
T ss_pred             HH-hcCCeEEEeCceeeEEecC
Confidence            22 1224444  3667766653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.94  E-value=4e-27  Score=188.44  Aligned_cols=180  Identities=19%  Similarity=0.285  Sum_probs=136.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ++||+|||||++|+++|..|.++|++|+|||+++.+||.|....          +.      ..           .+...
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~----------~~------~~-----------~~~~~   57 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALY----------PE------KY-----------IYDVA   57 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTC----------TT------SE-----------ECCST
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccC----------CC------ce-----------eeccC
Confidence            37999999999999999999999999999999998998885420          00      00           00000


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .++              .....++..++.+.+.+.+++  ++++++|+.++..+ +.|.|.+.++.    .+.+|+||+|
T Consensus        58 ~~~--------------~~~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~~-~~~~v~~~~g~----~~~~~~lv~A  116 (335)
T 2zbw_A           58 GFP--------------KVYAKDLVKGLVEQVAPFNPV--YSLGERAETLEREG-DLFKVTTSQGN----AYTAKAVIIA  116 (335)
T ss_dssp             TCS--------------SEEHHHHHHHHHHHHGGGCCE--EEESCCEEEEEEET-TEEEEEETTSC----EEEEEEEEEC
T ss_pred             CCC--------------CCCHHHHHHHHHHHHHHcCCE--EEeCCEEEEEEECC-CEEEEEECCCC----EEEeCEEEEC
Confidence            011              112377888888888888888  88999999999876 57888776554    7999999999


Q ss_pred             cCCCC-CCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          162 NGHFS-VPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       162 tG~~s-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ||..+ .|..|.++|...+.+...+.. +.......+++++|||+|.+|+|+|..|.+.+.+|++++|++
T Consensus       117 tG~~~~~p~~~~i~g~~~~~~~~~~~~-~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~  185 (335)
T 2zbw_A          117 AGVGAFEPRRIGAPGEREFEGRGVYYA-VKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRP  185 (335)
T ss_dssp             CTTSEEEECCCCCTTTTTTBTTTEESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSS
T ss_pred             CCCCCCCCCCCCCCChhhccCcEEEEe-cCchhhcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCC
Confidence            99533 577778888776654333322 222233457899999999999999999999999999999988

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.94  E-value=5.3e-27  Score=185.83  Aligned_cols=201  Identities=20%  Similarity=0.275  Sum_probs=146.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      |+||+|||||++|+++|..|.+.|. +|+|+|++ .+||.|......                              ..+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~~~~~------------------------------~~~   49 (311)
T 2q0l_A            1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITGSSEI------------------------------ENY   49 (311)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGGCSCB------------------------------CCS
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCccccccccc------------------------------ccC
Confidence            5899999999999999999999999 99999995 577766542100                              000


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                      ..+             .....+.++.+++.+.+.+.+++  ++. .+|+++...+ +.|.+.+.++.    .+.+|+||+
T Consensus        50 ~~~-------------~~~~~~~~~~~~l~~~~~~~~v~--~~~-~~v~~i~~~~-~~~~v~~~~g~----~~~~~~vv~  108 (311)
T 2q0l_A           50 PGV-------------KEVVSGLDFMQPWQEQCFRFGLK--HEM-TAVQRVSKKD-SHFVILAEDGK----TFEAKSVII  108 (311)
T ss_dssp             TTC-------------CSCBCHHHHHHHHHHHHHTTSCE--EEC-SCEEEEEEET-TEEEEEETTSC----EEEEEEEEE
T ss_pred             CCC-------------cccCCHHHHHHHHHHHHHHcCCE--EEE-EEEEEEEEcC-CEEEEEEcCCC----EEECCEEEE
Confidence            000             01234478889999988888888  776 7899998876 66888776544    799999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC----ccccc
Q 024975          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHE  236 (259)
Q Consensus       161 AtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~----~~~~~  236 (259)
                      |||  +.++.|.++|...+.+...+...........+++++|+|+|.+|+|+|..|.+.+.+|++++|++.    +++.+
T Consensus       109 AtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~  186 (311)
T 2q0l_A          109 ATG--GSPKRTGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITLE  186 (311)
T ss_dssp             CCC--EEECCCCCBTHHHHBTTTEESCHHHHGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCSCHHHHH
T ss_pred             CCC--CCCCCCCCCChhhccCCcEEEeecCChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCCCHHHHH
Confidence            999  677888888875543333433322222234569999999999999999999999999999999883    33444


Q ss_pred             CCCCCCCceE--eeeeeEEeec
Q 024975          237 KQPGYDNMWL--HSMVRTKKCS  256 (259)
Q Consensus       237 ~~~~~~~~~~--~~~v~~~~~~  256 (259)
                      ++.+..++.+  ++.|++++..
T Consensus       187 ~l~~~~gv~v~~~~~v~~i~~~  208 (311)
T 2q0l_A          187 HAKNNDKIEFLTPYVVEEIKGD  208 (311)
T ss_dssp             HHHTCTTEEEETTEEEEEEEEE
T ss_pred             HHhhCCCeEEEeCCEEEEEECC
Confidence            5544445655  3667776543

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.94  E-value=1.4e-26  Score=194.05  Aligned_cols=211  Identities=19%  Similarity=0.225  Sum_probs=142.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--------------cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--------------TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYK   67 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--------------~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (259)
                      .+||+|||+||+||++|..|.+.+.              ..+.+|+.+.++  |+.....        + ...+......
T Consensus        39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~--Wh~g~~~--------p-~~~~q~~fl~  107 (501)
T 4b63_A           39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFA--WHSGMLV--------P-GSKMQISFIK  107 (501)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCC--SSGGGCC--------T-TCBCSSCGGG
T ss_pred             cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCC--cCCCCCC--------C-Cccccccchh
Confidence            4799999999999999999988654              455566655443  3221000        0 0000000111


Q ss_pred             ccee-ccccccceecCCCCCcc-CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC-------c
Q 024975           68 SLRV-NLPRELMGFQAYPFVAR-NYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-------K  138 (259)
Q Consensus        68 ~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-------~  138 (259)
                      .+.. ..|...+.|..+-.... ......+...||++.++.+|+++++++++..  ++++++|++++..+.+       .
T Consensus       108 Dlvtl~~P~s~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~--vrf~~~V~~v~~~~~~~~~~~~~~  185 (501)
T 4b63_A          108 DLATLRDPRSSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDV--VAYGEEVVEVIPGKSDPSSSVVDF  185 (501)
T ss_dssp             SSSTTTCTTCTTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGG--EEESEEEEEEEEECSSTTSSCBCE
T ss_pred             hhccccCCCCccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCc--eEcceEEEeeccccccccccccce
Confidence            1111 11211122211100000 0000124567899999999999999988766  9999999999976532       4


Q ss_pred             EEEEEEecC-CceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCC------CCCCCCCeEEEEccCcCHHH
Q 024975          139 WKVKSRKKD-DVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI------PNPFQDQVVILIGHYASGLD  211 (259)
Q Consensus       139 ~~v~~~~g~-~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~v~viG~G~~a~e  211 (259)
                      |.|++.++. ++...+.|+.||+|||  ..|.+|   +...+.+..+|+..|..      ...+.+|+|+|||+|.||+|
T Consensus       186 ~~V~~~~~~~g~~~~~~ar~vVlatG--~~P~iP---~~~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~e  260 (501)
T 4b63_A          186 FTVRSRNVETGEISARRTRKVVIAIG--GTAKMP---SGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAE  260 (501)
T ss_dssp             EEEEEEETTTCCEEEEEEEEEEECCC--CEECCC---TTSCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHH
T ss_pred             EEEEEecCCCceEEEEEeCEEEECcC--CCCCCC---CCCCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHH
Confidence            999999876 6677899999999999  555555   44456788999988764      45578899999999999999


Q ss_pred             HHHHHhcc--cCeEEEEecCC
Q 024975          212 IKRDLAGF--AKEVHIASRSV  230 (259)
Q Consensus       212 ~a~~l~~~--~~~v~~~~r~~  230 (259)
                      ++.+|++.  +.+|++++|++
T Consensus       261 i~~~L~~~~~~~~v~~~~R~~  281 (501)
T 4b63_A          261 IFHDLQKRYPNSRTTLIMRDS  281 (501)
T ss_dssp             HHHHHHHHSTTCEEEEECSSS
T ss_pred             HHHHHHhcCCCceEEEEeCCC
Confidence            99999865  67899999997

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.94  E-value=1.4e-26  Score=182.11  Aligned_cols=196  Identities=14%  Similarity=0.180  Sum_probs=142.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      |++||+|||||++|+++|..|++.|.+|+|+|+++..+..+...                                 .. 
T Consensus         1 m~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~---------------------------------~~-   46 (297)
T 3fbs_A            1 MKFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHS---------------------------------HG-   46 (297)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCC---------------------------------CS-
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhh---------------------------------cC-
Confidence            78999999999999999999999999999999975322111000                                 00 


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                        ++           ........++..++.+.+.+. +++  + ...+|+++...+ +.|.+.+.++.    .+.||+||
T Consensus        47 --~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~~~v~~i~~~~-~~~~v~~~~g~----~~~~d~vv  105 (297)
T 3fbs_A           47 --FL-----------GQDGKAPGEIIAEARRQIERYPTIH--W-VEGRVTDAKGSF-GEFIVEIDGGR----RETAGRLI  105 (297)
T ss_dssp             --ST-----------TCTTCCHHHHHHHHHHHHTTCTTEE--E-EESCEEEEEEET-TEEEEEETTSC----EEEEEEEE
T ss_pred             --Cc-----------CCCCCCHHHHHHHHHHHHHhcCCeE--E-EEeEEEEEEEcC-CeEEEEECCCC----EEEcCEEE
Confidence              00           111233478888998888776 444  3 456999999876 67999887765    79999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC---ccccc
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---DETHE  236 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~---~~~~~  236 (259)
                      +|||  +.|+.|.++|...+.+...+...+.......+++++|+|+|.+|+|+|..|.+.+ +|++++|.+.   +.+.+
T Consensus       106 iAtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~~~~~~~~  182 (297)
T 3fbs_A          106 LAMG--VTDELPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVEPDADQHA  182 (297)
T ss_dssp             ECCC--CEEECCCCBTTGGGBTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCCCCHHHHH
T ss_pred             ECCC--CCCCCCCCCCchhhcCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCCCCHHHHH
Confidence            9999  6788889999887666555555544444556799999999999999999999998 9999999873   22222


Q ss_pred             CCCCCCCceEe-eeeeEEee
Q 024975          237 KQPGYDNMWLH-SMVRTKKC  255 (259)
Q Consensus       237 ~~~~~~~~~~~-~~v~~~~~  255 (259)
                      .+ ...++.+. +.|++++.
T Consensus       183 ~l-~~~gv~i~~~~v~~i~~  201 (297)
T 3fbs_A          183 LL-AARGVRVETTRIREIAG  201 (297)
T ss_dssp             HH-HHTTCEEECSCEEEEET
T ss_pred             HH-HHCCcEEEcceeeeeec
Confidence            22 22344433 56666654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.94  E-value=1.2e-26  Score=187.43  Aligned_cols=207  Identities=19%  Similarity=0.266  Sum_probs=147.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ++||+|||||++|+++|..|.+.|++|+|||+.+.+||.|....          +..     ..            +...
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~----------~~~-----~~------------~~~~   66 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALY----------PEK-----HI------------YDVA   66 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTC----------TTS-----EE------------CCST
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccC----------CCc-----cc------------ccCC
Confidence            47999999999999999999999999999999998998885320          000     00            0000


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .++              .....++..++.+.+.+.+++  ++++++|+.+...+++.|.|.+.++.    .+.+|+||+|
T Consensus        67 ~~~--------------~~~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~v~~~~g~----~~~~~~li~A  126 (360)
T 3ab1_A           67 GFP--------------EVPAIDLVESLWAQAERYNPD--VVLNETVTKYTKLDDGTFETRTNTGN----VYRSRAVLIA  126 (360)
T ss_dssp             TCS--------------SEEHHHHHHHHHHHHHTTCCE--EECSCCEEEEEECTTSCEEEEETTSC----EEEEEEEEEC
T ss_pred             CCC--------------CCCHHHHHHHHHHHHHHhCCE--EEcCCEEEEEEECCCceEEEEECCCc----EEEeeEEEEc
Confidence            001              112377888888888888888  88999999999875347888887654    7999999999


Q ss_pred             cCCCC-CCccCCCCC-CCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC----cccc
Q 024975          162 NGHFS-VPRLAQVPG-IDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETH  235 (259)
Q Consensus       162 tG~~s-~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~----~~~~  235 (259)
                      ||..+ .|..|.++| ...+.+...+.. +.......+++++|||+|.+|+|+|..|.+.+.+|++++|++.    +.+.
T Consensus       127 tG~~~~~~~~~~i~g~~~~~~~~~v~~~-~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~  205 (360)
T 3ab1_A          127 AGLGAFEPRKLPQLGNIDHLTGSSVYYA-VKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTA  205 (360)
T ss_dssp             CTTCSCCBCCCGGGCCCTTTBTTTEESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSCSHHH
T ss_pred             cCCCcCCCCCCCCCCchhhCcCceEEEe-cCCHHHcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCCHHHH
Confidence            99644 566777777 665554433322 2223334678999999999999999999999999999999872    2333


Q ss_pred             cCCCC---CCCceE--eeeeeEEeec
Q 024975          236 EKQPG---YDNMWL--HSMVRTKKCS  256 (259)
Q Consensus       236 ~~~~~---~~~~~~--~~~v~~~~~~  256 (259)
                      +.+.+   ..++.+  ++.|++++..
T Consensus       206 ~~l~~~~~~~gv~i~~~~~v~~i~~~  231 (360)
T 3ab1_A          206 HEVERARANGTIDVYLETEVASIEES  231 (360)
T ss_dssp             HSSHHHHHHTSEEEESSEEEEEEEEE
T ss_pred             HHHHHHhhcCceEEEcCcCHHHhccC
Confidence            33322   123443  4567776543

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.94  E-value=7e-27  Score=187.10  Aligned_cols=206  Identities=17%  Similarity=0.274  Sum_probs=148.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC----CcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE----QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~----~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (259)
                      |++||+|||||++|+++|..|+++|++|+|||+.+    .+||.|....                               
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~-------------------------------   69 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTT-------------------------------   69 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSS-------------------------------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccch-------------------------------
Confidence            45899999999999999999999999999999954    6676665421                               


Q ss_pred             cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (259)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad  156 (259)
                        .+..++          ....+....++..++.+.+.+.+++  ++.++ |+++.... +.|.+.+.... ....+.+|
T Consensus        70 --~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~gv~--i~~~~-v~~i~~~~-~~~~v~~~~~~-~~~~~~~d  132 (338)
T 3itj_A           70 --EIENFP----------GFPDGLTGSELMDRMREQSTKFGTE--IITET-VSKVDLSS-KPFKLWTEFNE-DAEPVTTD  132 (338)
T ss_dssp             --EECCST----------TCTTCEEHHHHHHHHHHHHHHTTCE--EECSC-EEEEECSS-SSEEEEETTCS-SSCCEEEE
T ss_pred             --hhcccC----------CCcccCCHHHHHHHHHHHHHHcCCE--EEEeE-EEEEEEcC-CEEEEEEEecC-CCcEEEeC
Confidence              000010          0011233488999999999999998  88887 99998765 77888774211 01368999


Q ss_pred             EEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCC--CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC---
Q 024975          157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN--PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---  231 (259)
Q Consensus       157 ~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~---  231 (259)
                      +||+|||  +.++.|.++|...+.+...+........  ...+++++|||+|.+|+|+|..|.+.+.+|++++|.+.   
T Consensus       133 ~vvlAtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~  210 (338)
T 3itj_A          133 AIILATG--ASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA  210 (338)
T ss_dssp             EEEECCC--EEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred             EEEECcC--CCcCCCCCCCchhccCccEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC
Confidence            9999999  5788888888765444444443322222  34679999999999999999999999999999999983   


Q ss_pred             -cccccCCCCCCCceE--eeeeeEEeec
Q 024975          232 -DETHEKQPGYDNMWL--HSMVRTKKCS  256 (259)
Q Consensus       232 -~~~~~~~~~~~~~~~--~~~v~~~~~~  256 (259)
                       ..+.+++.+..++.+  ++.|++++..
T Consensus       211 ~~~~~~~l~~~~gv~i~~~~~v~~i~~~  238 (338)
T 3itj_A          211 STIMQKRAEKNEKIEILYNTVALEAKGD  238 (338)
T ss_dssp             CHHHHHHHHHCTTEEEECSEEEEEEEES
T ss_pred             CHHHHHHHHhcCCeEEeecceeEEEEcc
Confidence             233444433335544  4677777654

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.94  E-value=2.3e-26  Score=182.06  Aligned_cols=201  Identities=19%  Similarity=0.207  Sum_probs=146.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ++||+||||||+|+++|..|.+.|.+|+|+|+.  +||.|....                                 .+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~--~gG~~~~~~---------------------------------~~~   45 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTV---------------------------------DIE   45 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGGCC---------------------------------EEC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC--CCceecccc---------------------------------ccc
Confidence            479999999999999999999999999999863  677765310                                 000


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeC--CCcEEEEEEecCCceEEEEeCEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                      .+.           ...+....++..++.+.+.+.+++  ++.+++|+.+....  ++.|.|.++++.    .+.||+||
T Consensus        46 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~~~~~~~v~~~~g~----~~~~~~lv  108 (310)
T 1fl2_A           46 NYI-----------SVPKTEGQKLAGALKVHVDEYDVD--VIDSQSASKLIPAAVEGGLHQIETASGA----VLKARSII  108 (310)
T ss_dssp             CBT-----------TBSSEEHHHHHHHHHHHHHTSCEE--EECSCCEEEEECCSSTTCCEEEEETTSC----EEEEEEEE
T ss_pred             ccc-----------CcCCCCHHHHHHHHHHHHHHcCCe--EEccCEEEEEEecccCCceEEEEECCCC----EEEeCEEE
Confidence            000           011223478888999999888888  89999999997643  136888887654    78999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC----cccc
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETH  235 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~----~~~~  235 (259)
                      +|||  +.+..|.++|...+.+...+...........+++++|+|+|.+|+|+|..|.+.+.+|++++|.+.    +.+.
T Consensus       109 ~AtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~  186 (310)
T 1fl2_A          109 VATG--AKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQ  186 (310)
T ss_dssp             ECCC--EEECCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHH
T ss_pred             ECcC--CCcCCCCCCChhhcccceeEEeccCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCccHHHH
Confidence            9999  567778888887665544443322222234578999999999999999999999999999999983    2333


Q ss_pred             cCCCCCCCceE--eeeeeEEeec
Q 024975          236 EKQPGYDNMWL--HSMVRTKKCS  256 (259)
Q Consensus       236 ~~~~~~~~~~~--~~~v~~~~~~  256 (259)
                      +++.+..++.+  ++.|+++..+
T Consensus       187 ~~l~~~~gv~v~~~~~v~~i~~~  209 (310)
T 1fl2_A          187 DKLRSLKNVDIILNAQTTEVKGD  209 (310)
T ss_dssp             HHHHTCTTEEEESSEEEEEEEES
T ss_pred             HHHhhCCCeEEecCCceEEEEcC
Confidence            44433235554  4677777653

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.94  E-value=2.3e-25  Score=180.42  Aligned_cols=194  Identities=21%  Similarity=0.298  Sum_probs=135.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      ++||+|||||++|+++|..|++.|. +|+|||+++ +||.|...+....          .+.. .+       ....+++
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~----------~~~~-~~-------~~~~~g~   64 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTR----------TITP-SF-------TSNGFGM   64 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCB----------CSSC-CC-------CCGGGTC
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCccccc----------ccCc-ch-------hcccCCc
Confidence            3799999999999999999999999 999999988 9998865321110          0000 00       0000111


Q ss_pred             cCCCCCccCCC-CCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           81 QAYPFVARNYE-GSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        81 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                      .++........ .......++.+..+..++.+.+.+.+++  ++++++|+++...+ +.|.|.+.++     .+.||+||
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g-----~~~~d~vV  136 (369)
T 3d1c_A           65 PDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELN--IFENTVVTNISADD-AYYTIATTTE-----TYHADYIF  136 (369)
T ss_dssp             CCTTCSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECS-SSEEEEESSC-----CEEEEEEE
T ss_pred             hhhhhccccccccccccccCCCHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEECC-CeEEEEeCCC-----EEEeCEEE
Confidence            00000000000 0001234566788999999999999998  99999999999875 6788887653     48999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|||+++.|   .+|+     +...+...+......++++|+|||+|.+|+|+|..|.+.+.+|++++|++
T Consensus       137 lAtG~~~~p---~ip~-----~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~  199 (369)
T 3d1c_A          137 VATGDYNFP---KKPF-----KYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTT  199 (369)
T ss_dssp             ECCCSTTSB---CCCS-----SSCEEGGGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             ECCCCCCcc---CCCC-----CceechhhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCC
Confidence            999965544   3444     23456666655555577899999999999999999999999999999987

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.93  E-value=5.2e-26  Score=180.32  Aligned_cols=201  Identities=25%  Similarity=0.312  Sum_probs=149.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEE-EeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVV-YEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v-~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      ++||+|||||++|+++|..|.+.|.+|+| +|+ +.+||.|......                                 
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~~---------------------------------   49 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSEI---------------------------------   49 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSCB---------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeecee---------------------------------
Confidence            68999999999999999999999999999 999 6688887642100                                 


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC-CcEEEEEEecCCceEEEEeCEEE
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                      ..++.          ...+....++..++.+.+.+.+++  ++.+ +|+++ ..+. +.|.+.+..+.    .+.+|+||
T Consensus        50 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~--~~~~-~v~~i-~~~~~~~~~v~~~~~~----~~~~d~lv  111 (315)
T 3r9u_A           50 ENYPG----------VAQVMDGISFMAPWSEQCMRFGLK--HEMV-GVEQI-LKNSDGSFTIKLEGGK----TELAKAVI  111 (315)
T ss_dssp             CCSTT----------CCSCBCHHHHHHHHHHHHTTTCCE--EECC-CEEEE-EECTTSCEEEEETTSC----EEEEEEEE
T ss_pred             ccCCC----------CCCCCCHHHHHHHHHHHHHHcCcE--EEEE-EEEEE-ecCCCCcEEEEEecCC----EEEeCEEE
Confidence            00010          011234588999999999999998  7777 88888 5431 46775444322    78999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC----cccc
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETH  235 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~----~~~~  235 (259)
                      +|||  +.++.|.++|...+.+...+...+.......+++++|+|+|.+|+|+|..|.+.+.+|++++|++.    +++.
T Consensus       112 lAtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~  189 (315)
T 3r9u_A          112 VCTG--SAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRAAPSTV  189 (315)
T ss_dssp             ECCC--EEECCCCCBTTTTTBTTTEESCHHHHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBSCHHHH
T ss_pred             EeeC--CCCCCCCCCChhhcCCCeEEeeecccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCCCHHHH
Confidence            9999  678889999988776666665544444445679999999999999999999999999999999883    3344


Q ss_pred             cCCCCCCCceE--eeeeeEEeec
Q 024975          236 EKQPGYDNMWL--HSMVRTKKCS  256 (259)
Q Consensus       236 ~~~~~~~~~~~--~~~v~~~~~~  256 (259)
                      +++.+..++.+  ++.|++++..
T Consensus       190 ~~~~~~~gv~~~~~~~v~~i~~~  212 (315)
T 3r9u_A          190 EKVKKNEKIELITSASVDEVYGD  212 (315)
T ss_dssp             HHHHHCTTEEEECSCEEEEEEEE
T ss_pred             HHHHhcCCeEEEeCcEEEEEEcC
Confidence            44433445554  4777777654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.93  E-value=1.3e-25  Score=178.42  Aligned_cols=199  Identities=18%  Similarity=0.175  Sum_probs=141.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+||+|||||++|+++|..|++.|.+|+|+|+ ..+||.+......                                 .
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~~~~~---------------------------------~   61 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAEAPLV---------------------------------E   61 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGGCSCB---------------------------------C
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccccchh---------------------------------h
Confidence            37999999999999999999999999999999 4577776542100                                 0


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .++.         .  ......++..++.+.+.+.+++  ++. .+|++++..+ +.|.|.+ ++.    .+.+|+||+|
T Consensus        62 ~~~~---------~--~~~~~~~~~~~~~~~~~~~~v~--~~~-~~v~~i~~~~-~~~~v~~-~~~----~~~~~~li~A  121 (319)
T 3cty_A           62 NYLG---------F--KSIVGSELAKLFADHAANYAKI--REG-VEVRSIKKTQ-GGFDIET-NDD----TYHAKYVIIT  121 (319)
T ss_dssp             CBTT---------B--SSBCHHHHHHHHHHHHHTTSEE--EET-CCEEEEEEET-TEEEEEE-SSS----EEEEEEEEEC
T ss_pred             hcCC---------C--cccCHHHHHHHHHHHHHHcCCE--EEE-eeEEEEEEeC-CEEEEEE-CCC----EEEeCEEEEC
Confidence            0000         0  0123367888888888888887  766 7899998865 6677776 332    6899999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC----cccccC
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEK  237 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~----~~~~~~  237 (259)
                      ||  +.++.|.+++...+.+...+...........+++++|+|+|.+|+|+|..|.+.+.+|++++|.+.    +.+.++
T Consensus       122 tG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~~~~l~~~  199 (319)
T 3cty_A          122 TG--TTHKHLGVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAYVQE  199 (319)
T ss_dssp             CC--EEECCCCCBTTTTTBTTTEESCHHHHGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCSCHHHHHH
T ss_pred             CC--CCcccCCCCChHHhCCceEEEEEecchhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCCCHHHHHH
Confidence            99  678888888876654433333222222234568999999999999999999999999999999872    223333


Q ss_pred             CC-CCCCceEeeeeeEEeec
Q 024975          238 QP-GYDNMWLHSMVRTKKCS  256 (259)
Q Consensus       238 ~~-~~~~~~~~~~v~~~~~~  256 (259)
                      +. ....+..++.|+++...
T Consensus       200 l~~~gv~i~~~~~v~~i~~~  219 (319)
T 3cty_A          200 IKKRNIPYIMNAQVTEIVGD  219 (319)
T ss_dssp             HHHTTCCEECSEEEEEEEES
T ss_pred             HhcCCcEEEcCCeEEEEecC
Confidence            32 22344455677777654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.93  E-value=6.2e-26  Score=181.49  Aligned_cols=200  Identities=23%  Similarity=0.306  Sum_probs=142.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ++||+|||||++|+++|..|.+.|.+|+|+|+. .+||.|......                              ..+.
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~------------------------------~~~~   62 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMTTTDV------------------------------ENYP   62 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGSCSCB------------------------------CCST
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceeccchh------------------------------hhcC
Confidence            479999999999999999999999999999985 577766532100                              0000


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEE-EEEecCCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKV-KSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v-~~~~g~~~~~~~~ad~VIl  160 (259)
                      .++             ......++..++.+.+.+.+++  ++.++ |++++. . +.|.| .+.++.    .+.||+||+
T Consensus        63 ~~~-------------~~~~~~~~~~~l~~~~~~~~v~--~~~~~-v~~i~~-~-~~~~v~~~~~g~----~~~~d~lvi  120 (335)
T 2a87_A           63 GFR-------------NGITGPELMDEMREQALRFGAD--LRMED-VESVSL-H-GPLKSVVTADGQ----THRARAVIL  120 (335)
T ss_dssp             TCT-------------TCBCHHHHHHHHHHHHHHTTCE--EECCC-EEEEEC-S-SSSEEEEETTSC----EEEEEEEEE
T ss_pred             CCC-------------CCCCHHHHHHHHHHHHHHcCCE--EEEee-EEEEEe-C-CcEEEEEeCCCC----EEEeCEEEE
Confidence            000             0123377888998888888988  88775 888877 3 66888 665543    799999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCc----cccc
Q 024975          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----ETHE  236 (259)
Q Consensus       161 AtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~----~~~~  236 (259)
                      |||  +.+..|.++|...+.+...+...........+++++|||+|.+|+|+|..|.+.+.+|++++|++..    .+.+
T Consensus       121 AtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~~~~~~~  198 (335)
T 2a87_A          121 AMG--AAARYLQVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRASKIMLD  198 (335)
T ss_dssp             CCC--EEECCCCCTHHHHTBTTTEESCHHHHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSSCTTHHH
T ss_pred             CCC--CCccCCCCCchHhccCCceEEeeccchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCccHHHHH
Confidence            999  5778888888665544444433222222245799999999999999999999999999999998832    2333


Q ss_pred             CCCCCCCceE--eeeeeEEeec
Q 024975          237 KQPGYDNMWL--HSMVRTKKCS  256 (259)
Q Consensus       237 ~~~~~~~~~~--~~~v~~~~~~  256 (259)
                      ++++..++.+  ++.|++++..
T Consensus       199 ~~~~~~gV~v~~~~~v~~i~~~  220 (335)
T 2a87_A          199 RARNNDKIRFLTNHTVVAVDGD  220 (335)
T ss_dssp             HHHHCTTEEEECSEEEEEEECS
T ss_pred             HHhccCCcEEEeCceeEEEecC
Confidence            3333345554  4677777654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.93  E-value=3.4e-25  Score=186.59  Aligned_cols=201  Identities=17%  Similarity=0.212  Sum_probs=149.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+||+||||||+|+++|.+|++.|.+|+|+|+  .+||.|.....                   .           ..+.
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~~~~~-------------------~-----------~~~~  259 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVLDTVD-------------------I-----------ENYI  259 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGTTCSC-------------------B-----------CCBT
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccccccc-------------------c-----------cccC
Confidence            47999999999999999999999999999987  36777653100                   0           0000


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeC--CCcEEEEEEecCCceEEEEeCEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                      ..              .+....++..++.+.+.+.+++  ++.+++|+++....  ++.|.|.+.++.    .+.+|+||
T Consensus       260 ~~--------------~~~~~~~l~~~l~~~~~~~gv~--v~~~~~v~~i~~~~~~~~~~~V~~~~g~----~~~~d~vV  319 (521)
T 1hyu_A          260 SV--------------PKTEGQKLAGALKAHVSDYDVD--VIDSQSASKLVPAATEGGLHQIETASGA----VLKARSII  319 (521)
T ss_dssp             TB--------------SSBCHHHHHHHHHHHHHTSCEE--EECSCCEEEEECCSSTTSCEEEEETTSC----EEEEEEEE
T ss_pred             CC--------------CCCCHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEeccCCCceEEEEECCCC----EEEcCEEE
Confidence            00              1233478889999999888998  99999999997542  136888887654    79999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC----cccc
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETH  235 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~----~~~~  235 (259)
                      +|||  +.++.|.+||...+.+...+...........+++|+|||+|++|+|+|..|.+.+.+|++++|.+.    +.+.
T Consensus       320 lAtG--~~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~~~~l~  397 (521)
T 1hyu_A          320 IATG--AKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQ  397 (521)
T ss_dssp             ECCC--EEECCCCCTTTTTTTTTTEECCTTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCSCHHHH
T ss_pred             ECCC--CCcCCCCCCChhhhcCceEEEeecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCcCHHHH
Confidence            9999  567888899988776655554443333344679999999999999999999999999999999883    3344


Q ss_pred             cCCCCCCCceE--eeeeeEEeec
Q 024975          236 EKQPGYDNMWL--HSMVRTKKCS  256 (259)
Q Consensus       236 ~~~~~~~~~~~--~~~v~~~~~~  256 (259)
                      +++.+..++.+  ++.|+++.+.
T Consensus       398 ~~l~~~~gV~v~~~~~v~~i~~~  420 (521)
T 1hyu_A          398 DKVRSLKNVDIILNAQTTEVKGD  420 (521)
T ss_dssp             HHHTTCTTEEEECSEEEEEEEEC
T ss_pred             HHHhcCCCcEEEeCCEEEEEEcC
Confidence            44444345554  4677777653

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.93  E-value=8.4e-26  Score=179.14  Aligned_cols=181  Identities=18%  Similarity=0.280  Sum_probs=127.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +|||+||||||+|++||.+|+++|++|+|||+.. .||.+..         ++.+.+.         ..       ..+.
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~-~gg~~~~---------G~~~~~~---------~i-------~~~~   57 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM-AGGVAAG---------GQLTTTT---------II-------ENFP   57 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS-GGGCCTT---------CGGGGSS---------EE-------CCST
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCCcccC---------CCcCChH---------Hh-------hhcc
Confidence            4899999999999999999999999999999964 4444431         1111000         00       0000


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .++             ......++...+.+.+.+.+.+  +.. .++....... ..+.+.+.++.    .+.||+||+|
T Consensus        58 g~~-------------~~i~~~~l~~~~~~~~~~~~~~--~~~-~~v~~~~~~~-~~~~~~~~~~~----~~~~~~liiA  116 (314)
T 4a5l_A           58 GFP-------------NGIDGNELMMNMRTQSEKYGTT--IIT-ETIDHVDFST-QPFKLFTEEGK----EVLTKSVIIA  116 (314)
T ss_dssp             TCT-------------TCEEHHHHHHHHHHHHHHTTCE--EEC-CCEEEEECSS-SSEEEEETTCC----EEEEEEEEEC
T ss_pred             CCc-------------ccCCHHHHHHHHHHHHhhcCcE--EEE-eEEEEeecCC-CceEEEECCCe----EEEEeEEEEc
Confidence            111             1122367888888888888876  544 4566665554 55666665544    8999999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCCCC--CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP--NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~  231 (259)
                      ||  +.|+.|.+||.+.+.....+...+...  ....+++++|||+|++|+|+|..|.+.|.+||+++|.+.
T Consensus       117 TG--~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          117 TG--ATAKRMHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             CC--EEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             cc--ccccccCCCccccccccceeeehhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            99  789999999977554444444333222  224578999999999999999999999999999999883

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.93  E-value=1.2e-25  Score=179.69  Aligned_cols=200  Identities=17%  Similarity=0.221  Sum_probs=142.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEee----CCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEK----GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~----~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (259)
                      +||+|||||++|+++|..|.+.|++|+|+|+    ...+||.+.....                              ..
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~------------------------------~~   58 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTD------------------------------VE   58 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSE------------------------------EC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccc------------------------------cc
Confidence            6999999999999999999999999999998    3444544432100                              00


Q ss_pred             eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                      .+..++             ....+.++..++.+.+.+.+++  ++.++ |++++... +.|.|.+ ++    ..+.+|+|
T Consensus        59 ~~~~~~-------------~~~~~~~~~~~l~~~~~~~gv~--~~~~~-v~~i~~~~-~~~~v~~-~~----~~~~~~~v  116 (333)
T 1vdc_A           59 NFPGFP-------------EGILGVELTDKFRKQSERFGTT--IFTET-VTKVDFSS-KPFKLFT-DS----KAILADAV  116 (333)
T ss_dssp             CSTTCT-------------TCEEHHHHHHHHHHHHHHTTCE--EECCC-CCEEECSS-SSEEEEC-SS----EEEEEEEE
T ss_pred             cCCCCc-------------cCCCHHHHHHHHHHHHHHCCCE--EEEeE-EEEEEEcC-CEEEEEE-CC----cEEEcCEE
Confidence            000011             0112367888898888888998  88775 88888765 6788877 33    37999999


Q ss_pred             EEccCCCCCCccCCCCCCCC----CCCceEEcccCCCCCC--CCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC-
Q 024975          159 VVCNGHFSVPRLAQVPGIDS----WPGKQMHSHNYRIPNP--FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-  231 (259)
Q Consensus       159 IlAtG~~s~~~~~~~~g~~~----~~~~~~~~~~~~~~~~--~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~-  231 (259)
                      |+|||  +.+..|.++|...    +.+...+.........  ..+++|+|+|+|.+|+|+|..|.+.+.+|++++|++. 
T Consensus       117 v~A~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          117 ILAIG--AVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF  194 (333)
T ss_dssp             EECCC--EEECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             EECCC--CCcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence            99999  5677888888765    4444444332222222  4578999999999999999999999999999999983 


Q ss_pred             ---cccccCCCCCCCceE--eeeeeEEeec
Q 024975          232 ---DETHEKQPGYDNMWL--HSMVRTKKCS  256 (259)
Q Consensus       232 ---~~~~~~~~~~~~~~~--~~~v~~~~~~  256 (259)
                         +.+.+++++..++.+  ++.|++++..
T Consensus       195 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  224 (333)
T 1vdc_A          195 RASKIMQQRALSNPKIDVIWNSSVVEAYGD  224 (333)
T ss_dssp             CSCHHHHHHHHTCTTEEEECSEEEEEEEES
T ss_pred             CccHHHHHHHHhCCCeeEecCCceEEEeCC
Confidence               233334444445655  4677777654

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.93  E-value=5.6e-26  Score=189.37  Aligned_cols=211  Identities=21%  Similarity=0.239  Sum_probs=137.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcC-----CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccce-eccccc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREG-----HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLR-VNLPRE   76 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g-----~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   76 (259)
                      +||+|||||++|+++|..|++.|     .+|+|||+.+.+|  |.......    ..     .+.......+. ...+..
T Consensus        31 ~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g--~~~~~~~~----~~-----~~~~~~~~~l~~~~~p~~   99 (463)
T 3s5w_A           31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVS----QS-----ELQISFLKDLVSLRNPTS   99 (463)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC--SSGGGCCS----SC-----BCSSCTTSSSSTTTCTTC
T ss_pred             CCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC--CcCCCCCC----CC-----cCCcchhhccccccCCCC
Confidence            59999999999999999999999     9999999998876  32210000    00     00000000000 001111


Q ss_pred             cceecCCCCCccC-CCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeC--CCcE--EEEEEecCCceE
Q 024975           77 LMGFQAYPFVARN-YEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKW--KVKSRKKDDVVE  151 (259)
Q Consensus        77 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~--~v~~~~g~~~~~  151 (259)
                      .+.+..+...... .....+...|+.+.++..|+.+.+.+++.+  ++++++|++++..+  ++.|  .|.+.++.++..
T Consensus       100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~  177 (463)
T 3s5w_A          100 PYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQ--SRYGEEVLRIEPMLSAGQVEALRVISRNADGEEL  177 (463)
T ss_dssp             TTSHHHHHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTT--EEESEEEEEEEEEEETTEEEEEEEEEEETTSCEE
T ss_pred             CCChhHhhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEecCCCceEEEEEEEecCCCceE
Confidence            1111100000000 000123456778899999999999888888  99999999998762  2444  677777655555


Q ss_pred             EEEeCEEEEccCCCCCCccCCCCCCCCCCC--ceEEcccCCCC-CCC-----CCCeEEEEccCcCHHHHHHHHhcc--cC
Q 024975          152 EETFDAVVVCNGHFSVPRLAQVPGIDSWPG--KQMHSHNYRIP-NPF-----QDQVVILIGHYASGLDIKRDLAGF--AK  221 (259)
Q Consensus       152 ~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~--~~~~~~~~~~~-~~~-----~~~~v~viG~G~~a~e~a~~l~~~--~~  221 (259)
                      .+.||+||+|||  +.|.+|..  ...+.+  ...+...+... ..+     .+++|+|||+|.+|+|+|..|.+.  +.
T Consensus       178 ~~~~d~lVlAtG--~~p~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~  253 (463)
T 3s5w_A          178 VRTTRALVVSPG--GTPRIPQV--FRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSV  253 (463)
T ss_dssp             EEEESEEEECCC--CEECCCGG--GGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTE
T ss_pred             EEEeCEEEECCC--CCCCCcch--hhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCC
Confidence            899999999999  56666651  233334  45666554331 222     578999999999999999999998  88


Q ss_pred             eEEEEecCC
Q 024975          222 EVHIASRSV  230 (259)
Q Consensus       222 ~v~~~~r~~  230 (259)
                      +|++++|++
T Consensus       254 ~Vt~v~r~~  262 (463)
T 3s5w_A          254 QADMILRAS  262 (463)
T ss_dssp             EEEEECSSS
T ss_pred             eEEEEEeCC
Confidence            999999998

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.93  E-value=1.8e-25  Score=176.48  Aligned_cols=174  Identities=18%  Similarity=0.243  Sum_probs=124.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .|||+||||||+|++||.+|+++|++|+|||++. +||.+...                     +.           .+.
T Consensus         6 ~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~-~gg~~~~~---------------------~~-----------~~~   52 (304)
T 4fk1_A            6 YIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT-NRNRVTQN---------------------SH-----------GFI   52 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CGGGGSSC---------------------BC-----------CST
T ss_pred             CcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCeeeee---------------------cC-----------Ccc
Confidence            4899999999999999999999999999999964 45543221                     00           000


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      ..+              -....++.....+.+.+++..  .+...++..+...+.+.+++.+.++.    .+.||+||+|
T Consensus        53 ~~~--------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~g~----~~~a~~liiA  112 (304)
T 4fk1_A           53 TRD--------------GIKPEEFKEIGLNEVMKYPSV--HYYEKTVVMITKQSTGLFEIVTKDHT----KYLAERVLLA  112 (304)
T ss_dssp             TCT--------------TBCHHHHHHHHHHHHTTSTTE--EEEECCEEEEEECTTSCEEEEETTCC----EEEEEEEEEC
T ss_pred             CCC--------------CCCHHHHHHHHHHHHHhcCCE--EEEeeEEEEeeecCCCcEEEEECCCC----EEEeCEEEEc
Confidence            000              011255666555555555554  55666777777766577888887765    8999999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcC-HHHHHHHHhcccCeEEEEecCC
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYAS-GLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~-a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ||  +.|+.|++||...+.+...+...........+++++|||+|.. ++|++..+.+.+.+|+++.|.+
T Consensus       113 TG--s~p~~p~i~G~~~~~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~  180 (304)
T 4fk1_A          113 TG--MQEEFPSIPNVREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGN  180 (304)
T ss_dssp             CC--CEEECCSCTTHHHHBTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSC
T ss_pred             cC--CccccccccCccccccceeeeccccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccc
Confidence            99  7899999999876555545444433333445677888888865 5788888888899999998887

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.93  E-value=9.1e-26  Score=179.39  Aligned_cols=200  Identities=17%  Similarity=0.262  Sum_probs=140.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ++||+|||||++|+++|..|.+.|.+|+|+|+. .+||.|......                              ..+.
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~------------------------------~~~~   53 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTEV------------------------------ENWP   53 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGGGCSBC------------------------------CCST
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEecchhh------------------------------hhCC
Confidence            479999999999999999999999999999974 577776542100                              0000


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .++             ....+.++..++.+.+.+.+++  ++.++ |+.++... +.|.+ +.++.    .+.+|+||+|
T Consensus        54 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~-v~~i~~~~-~~~~v-~~~~~----~~~~~~lv~A  111 (320)
T 1trb_A           54 GDP-------------NDLTGPLLMERMHEHATKFETE--IIFDH-INKVDLQN-RPFRL-NGDNG----EYTCDALIIA  111 (320)
T ss_dssp             TCC-------------SSCBHHHHHHHHHHHHHHTTCE--EECCC-EEEEECSS-SSEEE-EESSC----EEEEEEEEEC
T ss_pred             CCC-------------CCCCHHHHHHHHHHHHHHCCCE--EEEee-eeEEEecC-CEEEE-EeCCC----EEEcCEEEEC
Confidence            010             0122367888888888888988  87775 88888765 67888 55544    7999999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC----cccccC
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEK  237 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~----~~~~~~  237 (259)
                      ||  +.+..|.++|...+.+...+...........+++++|||+|.+|+|+|..|.+.+.+|++++|++.    +.+.+.
T Consensus       112 tG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~  189 (320)
T 1trb_A          112 TG--ASARYLGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKR  189 (320)
T ss_dssp             CC--EEECCCCCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHH
T ss_pred             CC--CCcCCCCCCChHHhCCceeEecccCCccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccccCHHHHHH
Confidence            99  567788888765544333433322222224578999999999999999999999999999999883    223323


Q ss_pred             CC---CCCCceE--eeeeeEEeec
Q 024975          238 QP---GYDNMWL--HSMVRTKKCS  256 (259)
Q Consensus       238 ~~---~~~~~~~--~~~v~~~~~~  256 (259)
                      +.   +..++.+  ++.|++++..
T Consensus       190 l~~~l~~~gv~i~~~~~v~~i~~~  213 (320)
T 1trb_A          190 LMDKVENGNIILHTNRTLEEVTGD  213 (320)
T ss_dssp             HHHHHHTSSEEEECSCEEEEEEEC
T ss_pred             HHHhcccCCeEEEcCceeEEEEcC
Confidence            21   1234544  4677777654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.90  E-value=7.2e-24  Score=177.68  Aligned_cols=201  Identities=19%  Similarity=0.206  Sum_probs=119.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (259)
                      .+||+||||||+|+++|..|+++|.+|+|||+.+.+||+|...        ++.|.+.++... .+..+...........
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~--------gciP~k~l~~~~~~~~~~~~~~~~~g~~~   96 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNV--------GCIPSKALLHASEMFHQAQHGLEALGVEV   96 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHHSSGGGTEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccc--------cchhhHHHHHHHHHHHHHHhhHhhcCccc
Confidence            4899999999999999999999999999999999999998754        222221111111 1111110000000000


Q ss_pred             cCCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975           81 QAYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad  156 (259)
                      ......        +.......    ..+...+.....+.+++  +..+.. ..   .+.+.+.|...+  +....+.+|
T Consensus        97 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~~-~~---~~~~~~~v~~~~--g~~~~~~~d  160 (491)
T 3urh_A           97 ANPKLN--------LQKMMAHKDATVKSNVDGVSFLFKKNKID--GFQGTG-KV---LGQGKVSVTNEK--GEEQVLEAK  160 (491)
T ss_dssp             CCCEEC--------HHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESEE-EE---CSSSEEEEECTT--SCEEEEECS
T ss_pred             CCCccC--------HHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEE-EE---ecCCEEEEEeCC--CceEEEEeC
Confidence            000000        00000000    12223334445556777  655543 22   222445555433  334579999


Q ss_pred             EEEEccCCCCCCccCCCCCCCC-CCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          157 AVVVCNGHFSVPRLAQVPGIDS-WPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       157 ~VIlAtG~~s~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +||+|||  +.|  +.+||... +.+...+...........+++++|||+|++|+|+|..|.+.+.+|++++|.+
T Consensus       161 ~lViATG--s~p--~~ipg~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  231 (491)
T 3urh_A          161 NVVIATG--SDV--AGIPGVEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLD  231 (491)
T ss_dssp             EEEECCC--EEC--CCBTTBCCCCCSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             EEEEccC--CCC--CCCCCcccccCCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccc
Confidence            9999999  444  45666652 3344344443333334456899999999999999999999999999999987

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.90  E-value=5.3e-25  Score=183.38  Aligned_cols=213  Identities=18%  Similarity=0.166  Sum_probs=132.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccc-cccceeccccccceec
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGFQ   81 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   81 (259)
                      +||+|||||++|+++|..|++.|.+|+|+|+.+.+||.|...        ++.|.+.++.... +..+.. .+.      
T Consensus         5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~--------gciPsk~l~~~a~~~~~~~~-~~~------   69 (466)
T 3l8k_A            5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYS--------GCVPSKTVREVIQTAWRLTN-IAN------   69 (466)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHH-HHC------
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCccccc--------CCCchHHHHHHHHHHHHHHh-ccc------
Confidence            799999999999999999999999999999989999998753        2222211111110 000000 000      


Q ss_pred             CCCCCccCCCCCCCCCCCC----CHHHHH-----HHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEE
Q 024975           82 AYPFVARNYEGSVDLRRYP----GHEEVL-----RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE  152 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~  152 (259)
                       .+          ....++    ....+.     .++...+.+.+++  +..+ ++..+.  . +.+.|...++.  ...
T Consensus        70 -~~----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~g-~v~~id--~-~~~~V~~~~g~--~~~  130 (466)
T 3l8k_A           70 -VK----------IPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLT--FYKG-YVKIKD--P-THVIVKTDEGK--EIE  130 (466)
T ss_dssp             -SC----------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCTTEE--EESE-EEEEEE--T-TEEEEEETTSC--EEE
T ss_pred             -CC----------CCcCHHHHHHHHHhheeccccchHHHHHHhCCCE--EEEe-EEEEec--C-CeEEEEcCCCc--EEE
Confidence             00          000010    001121     3333334444666  5544 566654  2 56777666543  223


Q ss_pred             EEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCC---CCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975          153 ETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR---IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (259)
Q Consensus       153 ~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~  229 (259)
                      +.||+||+|||  +.|..|.++|.+.    ......+.   ......+++++|||+|++|+|+|..|.+.+.+|++++|.
T Consensus       131 ~~~d~lviAtG--~~p~~p~i~G~~~----~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~  204 (466)
T 3l8k_A          131 AETRYMIIASG--AETAKLRLPGVEY----CLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEML  204 (466)
T ss_dssp             EEEEEEEECCC--EEECCCCCTTGGG----SBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             EecCEEEECCC--CCccCCCCCCccc----eEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeC
Confidence            99999999999  7888999998762    12222222   112234589999999999999999999999999999998


Q ss_pred             C-------CcccccCCCCC--CCceEeeeeeEEee
Q 024975          230 V-------ADETHEKQPGY--DNMWLHSMVRTKKC  255 (259)
Q Consensus       230 ~-------~~~~~~~~~~~--~~~~~~~~v~~~~~  255 (259)
                      +       ++++.+.+.+.  ..+..++.|++++.
T Consensus       205 ~~~l~~~~d~~~~~~l~~~l~v~i~~~~~v~~i~~  239 (466)
T 3l8k_A          205 DRALITLEDQDIVNTLLSILKLNIKFNSPVTEVKK  239 (466)
T ss_dssp             SSSCTTSCCHHHHHHHHHHHCCCEECSCCEEEEEE
T ss_pred             CcCCCCCCCHHHHHHHHhcCEEEEEECCEEEEEEE
Confidence            7       22233222111  45555677777765

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.89  E-value=7.1e-23  Score=169.97  Aligned_cols=198  Identities=16%  Similarity=0.131  Sum_probs=127.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (259)
                      |++||+|||||++|+++|..|++.  +.+|+|||+++.+|......          .         .+.  .        
T Consensus         1 M~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~----------~---------~~~--~--------   51 (452)
T 3oc4_A            1 MSLKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGL----------S---------AYF--N--------   51 (452)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC------------------------------------
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccc----------h---------hhh--c--------
Confidence            568999999999999999999998  89999999988665110000          0         000  0        


Q ss_pred             eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                          ...              ....++...+.+.+.+.+++  ++++++|++++... +.+.+...   .....+.+|++
T Consensus        52 ----~~~--------------~~~~~~~~~~~~~~~~~gi~--~~~~~~V~~id~~~-~~v~v~~~---~~~~~~~~d~l  107 (452)
T 3oc4_A           52 ----HTI--------------NELHEARYITEEELRRQKIQ--LLLNREVVAMDVEN-QLIAWTRK---EEQQWYSYDKL  107 (452)
T ss_dssp             ---------------------------CCCCHHHHHHTTEE--EECSCEEEEEETTT-TEEEEEET---TEEEEEECSEE
T ss_pred             ----CCC--------------CCHHHhhcCCHHHHHHCCCE--EEECCEEEEEECCC-CEEEEEec---CceEEEEcCEE
Confidence                000              00011111122334567887  88899999998765 55666411   12257999999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCC-----CCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC--
Q 024975          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP-----FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--  231 (259)
Q Consensus       159 IlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~--  231 (259)
                      |+|||  +.|..|+++|...  ........+.....     ..+++++|||+|++|+|+|..+.+.+.+|+++.|.+.  
T Consensus       108 viAtG--~~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  183 (452)
T 3oc4_A          108 ILATG--ASQFSTQIRGSQT--EKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLL  183 (452)
T ss_dssp             EECCC--CCBCCCCCBTTTC--TTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             EECCC--cccCCCCCCCCCC--CCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccc
Confidence            99999  7888898888764  22333333322211     2468999999999999999999999999999999872  


Q ss_pred             -----ccccc---CCCCCCCce--EeeeeeEEee
Q 024975          232 -----DETHE---KQPGYDNMW--LHSMVRTKKC  255 (259)
Q Consensus       232 -----~~~~~---~~~~~~~~~--~~~~v~~~~~  255 (259)
                           +++.+   +.++..++.  .++.|++++.
T Consensus       184 ~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~  217 (452)
T 3oc4_A          184 PKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEE  217 (452)
T ss_dssp             TTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEE
T ss_pred             cccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEc
Confidence                 12111   112233444  4577888773

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.89  E-value=1.1e-23  Score=174.94  Aligned_cols=196  Identities=17%  Similarity=0.211  Sum_probs=122.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (259)
                      ++||+|||||++|+++|..|++.|.+|+|+|+. .+||.|...        ++.|.+.++... .+..+. ........+
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~--------g~~p~k~l~~~~~~~~~~~-~~~~~g~~~   72 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNV--------GCIPSKALISASHRYEQAK-HSEEMGIKA   72 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHT--------SHHHHHHHHHHHHHHHHHH-TCGGGTEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCc--------CchhhHHHHHHHHHHHHHH-HHHhcCccc
Confidence            589999999999999999999999999999998 788888643        222211111100 011110 000000000


Q ss_pred             cCCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975           81 QAYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad  156 (259)
                      .....        .+...+...    ..+...+.+.+.+.+++  ++.++.+. +  ++ +.+.+.+.++.   ..+.+|
T Consensus        73 ~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-i--d~-~~v~V~~~~G~---~~i~~d  135 (455)
T 1ebd_A           73 ENVTI--------DFAKVQEWKASVVKKLTGGVEGLLKGNKVE--IVKGEAYF-V--DA-NTVRVVNGDSA---QTYTFK  135 (455)
T ss_dssp             CSCEE--------CHHHHHHHHHHHHHHHHHHHHHHHHTTTCE--EEESEEEE-E--ET-TEEEEEETTEE---EEEECS
T ss_pred             CCCcc--------CHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEE-c--cC-CeEEEEeCCCc---EEEEeC
Confidence            00000        000000000    12334456666677888  77776543 3  23 55777664431   468999


Q ss_pred             EEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       157 ~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +||+|||  +.|..|.++|.+.   ...+........ ..+++++|||+|++|+|+|..|.+.|.+|++++|.+
T Consensus       136 ~lViATG--s~p~~~~~~g~~~---~v~~~~~~~~~~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  203 (455)
T 1ebd_A          136 NAIIATG--SRPIELPNFKFSN---RILDSTGALNLG-EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG  203 (455)
T ss_dssp             EEEECCC--EEECCBTTBCCCS---SEECHHHHHTCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEEecC--CCCCCCCCCCccc---eEecHHHHhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence            9999999  6788888777543   233333322222 235899999999999999999999999999999987

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.89  E-value=8e-24  Score=177.23  Aligned_cols=193  Identities=16%  Similarity=0.195  Sum_probs=117.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEee--------CCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK--------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL   73 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~--------~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (259)
                      .|||+||||||+|+++|..|++.|.+|+|+|+        ...+||+|...        +|.|.+.+.............
T Consensus         6 ~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~--------gciPsk~l~~~~~~~~~~~~~   77 (488)
T 3dgz_A            6 SFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNV--------GCIPKKLMHQAALLGGMIRDA   77 (488)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHH--------SHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeeccc--------CCcccHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999997        45688888654        333322221111111000000


Q ss_pred             ccccceecCCCCCccCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEE
Q 024975           74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVK  142 (259)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~  142 (259)
                             ..+.+...       .........+..+           +...+...+++  +.. .++..+   +...+.+.
T Consensus        78 -------~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~i~-g~~~~~---~~~~v~v~  137 (488)
T 3dgz_A           78 -------HHYGWEVA-------QPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVK--YFN-IKASFV---DEHTVRGV  137 (488)
T ss_dssp             -------HHTTCCCC-------SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEC-CEEEES---SSSEEEEE
T ss_pred             -------HhcCcccC-------CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-EEEEEc---cCCeEEEE
Confidence                   01111000       0011122333322           22233445666  443 333332   22334444


Q ss_pred             EEecCCceEEEEeCEEEEccCCCCCCccCC-CCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccC
Q 024975          143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK  221 (259)
Q Consensus       143 ~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~  221 (259)
                      ..  ++....+.||+||+|||  +.|..|. +||....   ..++..+.... ..+++++|||+|++|+|+|..|.+.+.
T Consensus       138 ~~--~g~~~~~~~d~lViATG--s~p~~p~~i~G~~~~---~~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~~l~~~g~  209 (488)
T 3dgz_A          138 DK--GGKATLLSAEHIVIATG--GRPRYPTQVKGALEY---GITSDDIFWLK-ESPGKTLVVGASYVALECAGFLTGIGL  209 (488)
T ss_dssp             CT--TSCEEEEEEEEEEECCC--EEECCCSSCBTHHHH---CBCHHHHTTCS-SCCCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             eC--CCceEEEECCEEEEcCC--CCCCCCCCCCCcccc---cCcHHHHHhhh-hcCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            33  33345799999999999  7888888 8886431   12222232222 235789999999999999999999999


Q ss_pred             eEEEEecCC
Q 024975          222 EVHIASRSV  230 (259)
Q Consensus       222 ~v~~~~r~~  230 (259)
                      +|++++|.+
T Consensus       210 ~Vtlv~~~~  218 (488)
T 3dgz_A          210 DTTVMMRSI  218 (488)
T ss_dssp             CEEEEESSC
T ss_pred             ceEEEEcCc
Confidence            999999976

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.88  E-value=1.1e-23  Score=175.82  Aligned_cols=200  Identities=15%  Similarity=0.115  Sum_probs=122.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-cccccee-ccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRV-NLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~   79 (259)
                      ++||+|||||++|+++|..|++.|.+|+|+|+++.+||.|...        ++.|.+.++... .+..+.. ...  .++
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~--------g~~Psk~l~~~~~~~~~~~~~~~~--~~g   75 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNV--------GCIPSKALLNNSHYYHMAHGTDFA--SRG   75 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHSSHHH--HTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCccccc--------CccchHHHHHHHHHHHHhhhhhHh--hCc
Confidence            4799999999999999999999999999999998899998653        222211111110 0000000 000  000


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHH----HHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEE----VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a  155 (259)
                      +..... ..     .+...+....+    +...+.+.+.+.+++  ++.++. ..+  +. +.+.|.+.++  ....+.|
T Consensus        76 ~~~~~~-~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~-~~~--~~-~~~~v~~~~g--g~~~~~~  141 (474)
T 1zmd_A           76 IEMSEV-RL-----NLDKMMEQKSTAVKALTGGIAHLFKQNKVV--HVNGYG-KIT--GK-NQVTATKADG--GTQVIDT  141 (474)
T ss_dssp             EEESCE-EE-----CHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESEE-EEE--ET-TEEEEECTTS--CEEEEEE
T ss_pred             cccCCC-cc-----CHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEE-EEe--cC-CEEEEEecCC--CcEEEEe
Confidence            000000 00     00000000011    222335556667888  777754 333  23 5566665431  1247999


Q ss_pred             CEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       156 d~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |+||+|||  +.|..|.++|.+..  ...++..+..... .+++++|||+|++|+|+|..|.+.+.+|++++|.+
T Consensus       142 d~lViAtG--s~p~~p~i~g~~~~--~v~t~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  211 (474)
T 1zmd_A          142 KNILIATG--SEVTPFPGITIDED--TIVSSTGALSLKK-VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLG  211 (474)
T ss_dssp             EEEEECCC--EEECCCTTCCCCSS--SEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEECCC--CCCCCCCCCCCCcC--cEEcHHHHhhccc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccC
Confidence            99999999  67888888886531  2344433333222 35899999999999999999999999999999987

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.88  E-value=4.4e-24  Score=178.02  Aligned_cols=202  Identities=17%  Similarity=0.156  Sum_probs=123.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceeccccccce
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMG   79 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   79 (259)
                      |++||+|||||++|+++|.+|++.|.+|+|+|+.+.+||.|...        ++.|.+.++... .+..+..........
T Consensus         1 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~--------g~~psk~l~~~~~~~~~~~~~~~~~g~~   72 (468)
T 2qae_A            1 NPYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNV--------GCIPSKALLHATHLYHDAHANFARYGLM   72 (468)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCc--------CcHhHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            57899999999999999999999999999999998899998643        222211111100 000100000000000


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a  155 (259)
                      .......       .+...+...    ..+...+...+.+.+++  ++.++.+ .+  +. +.+.+.+.++  ....+.+
T Consensus        73 ~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~--~~~g~~~-~i--~~-~~~~v~~~~G--~~~~~~~  137 (468)
T 2qae_A           73 GGEGVTM-------DSAKMQQQKERAVKGLTGGVEYLFKKNKVT--YYKGEGS-FE--TA-HSIRVNGLDG--KQEMLET  137 (468)
T ss_dssp             CGGGCEE-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEEEEEE-EE--ET-TEEEEEETTS--CEEEEEE
T ss_pred             cCCCCcc-------CHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEE-Ee--eC-CEEEEEecCC--ceEEEEc
Confidence            0000000       000000000    12333445566677888  7777543 33  23 5566665443  2247999


Q ss_pred             CEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       156 d~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |+||+|||  +.|..|+++|.+. . .......+.... ..+++++|||+|++|+|+|..|.+.+.+|++++|.+
T Consensus       138 d~lviAtG--~~p~~p~~~g~~~-~-~v~t~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  207 (468)
T 2qae_A          138 KKTIIATG--SEPTELPFLPFDE-K-VVLSSTGALALP-RVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAP  207 (468)
T ss_dssp             EEEEECCC--EEECCBTTBCCCS-S-SEECHHHHHTCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEECCC--CCcCCCCCCCCCc-C-ceechHHHhhcc-cCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCC
Confidence            99999999  6788888777643 1 233333332222 245899999999999999999999999999999987

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.88  E-value=1.1e-23  Score=176.84  Aligned_cols=199  Identities=14%  Similarity=0.124  Sum_probs=121.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC--------CcCceeeeCCCCCCCCCCCCCCCCCccccccc-cceecc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYK-SLRVNL   73 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~--------~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   73 (259)
                      ||++|||+||+|+.+|.++++.|.+|+|+|+..        .+||+|...        +|.|++.++.+.... .+....
T Consensus        43 YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~--------GCIPsK~L~~aa~~~~~~~~~~  114 (542)
T 4b1b_A           43 YDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNV--------GCVPKKLMHYAGHMGSIFKLDS  114 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHH--------SHHHHHHHHHHHHHHHHHHHTG
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCccccc--------chHHHHHHHHHHHHHHHHHhhh
Confidence            899999999999999999999999999999743        479999776        777766555543222 221111


Q ss_pred             ccccceecC--CCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC
Q 024975           74 PRELMGFQA--YPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD  147 (259)
Q Consensus        74 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~  147 (259)
                      ......+..  ..|...          ....    ..+.......+++.+++  +..+ ...-+.   .+...|......
T Consensus       115 ~~~Gi~~~~~~~d~~~~----------~~~~~~~v~~l~~~~~~~l~~~~V~--~i~G-~a~f~~---~~~v~V~~~~~~  178 (542)
T 4b1b_A          115 KAYGWKFDNLKHDWKKL----------VTTVQSHIRSLNFSYMTGLRSSKVK--YING-LAKLKD---KNTVSYYLKGDL  178 (542)
T ss_dssp             GGGTEEEEEEEECHHHH----------HHHHHHHHHHHHHHHHHHHHHTTCE--EECE-EEEEEE---TTEEEEEEC--C
T ss_pred             HhcCcccCcccccHHHH----------HHHHHHHHHHHHHHHHHHHHhCCCE--EEee-eEEEcC---CCcceEeecccC
Confidence            111111111  011000          0000    11222223334455776  5443 222221   244555554433


Q ss_pred             CceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEe
Q 024975          148 DVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS  227 (259)
Q Consensus       148 ~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~  227 (259)
                      +..+.++++++|+|||  +.|.+|+..+...  .....+..+..... .+++++|||+|++|+|+|..+.++|.+||++.
T Consensus       179 ~~~~~i~a~~iiIATG--s~P~~P~~~~~~~--~~~~ts~~~l~l~~-lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~  253 (542)
T 4b1b_A          179 SKEETVTGKYILIATG--CRPHIPDDVEGAK--ELSITSDDIFSLKK-DPGKTLVVGASYVALECSGFLNSLGYDVTVAV  253 (542)
T ss_dssp             CCEEEEEEEEEEECCC--EEECCCSSSBTHH--HHCBCHHHHTTCSS-CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CceEEEeeeeEEeccC--CCCCCCCcccCCC--ccccCchhhhcccc-CCceEEEECCCHHHHHHHHHHHhcCCeEEEec
Confidence            4456899999999999  8888886443321  01122333333323 34889999999999999999999999999998


Q ss_pred             cCC
Q 024975          228 RSV  230 (259)
Q Consensus       228 r~~  230 (259)
                      |..
T Consensus       254 ~~~  256 (542)
T 4b1b_A          254 RSI  256 (542)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            866

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.88  E-value=1.8e-23  Score=175.47  Aligned_cols=220  Identities=17%  Similarity=0.199  Sum_probs=123.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      |++||+|||||++|+++|..|++.|.+|+|||++ .+||.|...        ++.|.+.+..............      
T Consensus         1 m~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~c~~~--------gc~P~k~l~~~a~~~~~~~~~~------   65 (500)
T 1onf_A            1 MVYDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVNV--------GCVPKKIMFNAASVHDILENSR------   65 (500)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHHT--------SHHHHHHHHHHHHHHHHHHHGG------
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CcCcccccc--------CCcchHHHHHHHHHHHHHHhhH------
Confidence            6799999999999999999999999999999998 489988653        2222111111100000000000      


Q ss_pred             cCCCCCccCCCCCCCCCCCC----CH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEe-------
Q 024975           81 QAYPFVARNYEGSVDLRRYP----GH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-------  145 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-------  145 (259)
                       .+.+...      ....++    ..    ..+...+...+.+.+++  ++.++. ..++  . +.+.+....       
T Consensus        66 -~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~-~~id--~-~~v~v~~~~~~~~~~~  132 (500)
T 1onf_A           66 -HYGFDTK------FSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVD--LYEGTA-SFLS--E-NRILIKGTKDNNNKDN  132 (500)
T ss_dssp             -GGTCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESCC-CCC---------------------
T ss_pred             -hcCCccC------CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEE-EEee--C-CEEEEEeccccccccc
Confidence             0111000      000010    00    12223344555667887  766643 3332  1 334443200       


Q ss_pred             cCCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEE
Q 024975          146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHI  225 (259)
Q Consensus       146 g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~  225 (259)
                      .++....+.||+||+|||  +.|..|.++|.+.    ..++..+.....  +++++|||+|++|+|+|..|.+.+.+|++
T Consensus       133 ~~~~~~~~~~d~lViAtG--s~p~~p~i~G~~~----~~~~~~~~~~~~--~~~vvViGgG~ig~E~A~~l~~~g~~Vtl  204 (500)
T 1onf_A          133 GPLNEEILEGRNILIAVG--NKPVFPPVKGIEN----TISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLGIDSYI  204 (500)
T ss_dssp             --------CBSSEEECCC--CCBCCCSCTTGGG----CEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             cCCCceEEEeCEEEECCC--CCCCCCCCCCCCc----ccCHHHHhccCC--CCeEEEECChHHHHHHHHHHHHcCCeEEE
Confidence            000013689999999999  7888888888642    344444433332  68999999999999999999999999999


Q ss_pred             EecCCC------cccccCC---CCCCCce--EeeeeeEEeec
Q 024975          226 ASRSVA------DETHEKQ---PGYDNMW--LHSMVRTKKCS  256 (259)
Q Consensus       226 ~~r~~~------~~~~~~~---~~~~~~~--~~~~v~~~~~~  256 (259)
                      ++|.+.      +++.+.+   ++..++.  .++.|++++..
T Consensus       205 v~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~  246 (500)
T 1onf_A          205 FARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKV  246 (500)
T ss_dssp             ECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEES
T ss_pred             EecCCccCcccchhhHHHHHHHHHhCCCEEEECCEEEEEEEc
Confidence            999872      2222211   2222444  45677777653

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.88  E-value=5.4e-24  Score=177.66  Aligned_cols=226  Identities=16%  Similarity=0.143  Sum_probs=135.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (259)
                      ++||+|||||++|+++|..|++.|.+|+|+|+.+.+||.|...        ++.|.+.++... .+..+..........+
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~--------g~~p~k~l~~~~~~~~~~~~~~~~~g~~~   77 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNV--------GCIPSKALLHSSHMYHEAKHSFANHGVKV   77 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHH--------SHHHHHHHHHHHHHHHHHHHTHHHHTEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCc--------CccchHHHHHHHHHHHHHHHHHHhcCccc
Confidence            5899999999999999999999999999999998899988643        222211111100 0111100000000000


Q ss_pred             cCCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975           81 QAYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad  156 (259)
                      .....        .+...+...    ..+...+...+.+.+++  ++.++.+. +  +. +.+.|.+.++  ....+.+|
T Consensus        78 ~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-~--~~-~~~~v~~~~G--~~~~i~~d  141 (470)
T 1dxl_A           78 SNVEI--------DLAAMMGQKDKAVSNLTRGIEGLFKKNKVT--YVKGYGKF-V--SP-SEISVDTIEG--ENTVVKGK  141 (470)
T ss_dssp             SCEEE--------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEESCEEE-E--ET-TEEEECCSSS--CCEEEECS
T ss_pred             CCCcc--------CHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEEEE-e--cC-CEEEEEeCCC--ceEEEEcC
Confidence            00000        000000000    22334455666677888  88876553 3  33 5566665443  12479999


Q ss_pred             EEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC-----
Q 024975          157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----  231 (259)
Q Consensus       157 ~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~-----  231 (259)
                      +||+|||  +.|..|.++|.+..  ...+........ ..+++++|||+|++|+|+|..|.+.+.+|++++|.+.     
T Consensus       142 ~lIiAtG--s~p~~p~~~g~~~~--~v~~~~~~~~~~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~  216 (470)
T 1dxl_A          142 HIIIATG--SDVKSLPGVTIDEK--KIVSSTGALALS-EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTM  216 (470)
T ss_dssp             EEEECCC--EEECCBTTBCCCSS--SEECHHHHTTCS-SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS
T ss_pred             EEEECCC--CCCCCCCCCCCCcc--cEEeHHHhhhhh-hcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccc
Confidence            9999999  67888887775431  233333333222 2458999999999999999999999999999999872     


Q ss_pred             -ccccc----CCC-CCCCceEeeeeeEEeec
Q 024975          232 -DETHE----KQP-GYDNMWLHSMVRTKKCS  256 (259)
Q Consensus       232 -~~~~~----~~~-~~~~~~~~~~v~~~~~~  256 (259)
                       +++.+    .+. ....+..++.|++++..
T Consensus       217 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~  247 (470)
T 1dxl_A          217 DAEIRKQFQRSLEKQGMKFKLKTKVVGVDTS  247 (470)
T ss_dssp             CHHHHHHHHHHHHHSSCCEECSEEEEEEECS
T ss_pred             cHHHHHHHHHHHHHcCCEEEeCCEEEEEEEc
Confidence             22221    121 12344555677777653

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.88  E-value=2e-23  Score=175.87  Aligned_cols=193  Identities=18%  Similarity=0.236  Sum_probs=117.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC--------CcCceeeeCCCCCCCCCCCCCCCCCccccccccceecc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL   73 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~--------~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (259)
                      .+||+||||||+|+++|..|++.|.+|+|||+.+        .+||+|...        +|.|.+.+............ 
T Consensus        32 ~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~--------GciPsk~l~~~~~~~~~~~~-  102 (519)
T 3qfa_A           32 DYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNV--------GCIPKKLMHQAALLGQALQD-  102 (519)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHH--------SHHHHHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCc--------CccchHHHHHHHHHHHHHHH-
Confidence            3799999999999999999999999999999964        678888654        33332221111111100000 


Q ss_pred             ccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHH-----------HHHHHHhCCceeEEeceeEEEEEEeCCCcEEEE
Q 024975           74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYL-----------QNFAREFGVDQVVRLHTEVLNARLVESNKWKVK  142 (259)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~  142 (259)
                            +..+.+...       .........+..+.           ...+...+++  +..+ ++..+.  . ..+.|.
T Consensus       103 ------~~~~g~~~~-------~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~--~i~g-~a~~~d--~-~~v~v~  163 (519)
T 3qfa_A          103 ------SRNYGWKVE-------ETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVV--YENA-YGQFIG--P-HRIKAT  163 (519)
T ss_dssp             ------HHHTTBCCC-------SSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EECS-EEEEEE--T-TEEEEE
T ss_pred             ------HHhcCcccC-------CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEee--C-CEEEEE
Confidence                  001111100       00111123333322           2233445776  5443 444432  2 344454


Q ss_pred             EEecCCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCe
Q 024975          143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE  222 (259)
Q Consensus       143 ~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~  222 (259)
                      ..+  ++...+.||+||+|||  +.|..|.++|...+   ...+..+.... ..+++++|||+|++|+|+|..|.+.+.+
T Consensus       164 ~~~--g~~~~i~~d~lViATG--s~p~~p~i~G~~~~---~~t~~~~~~l~-~~~~~vvVIGgG~ig~E~A~~l~~~G~~  235 (519)
T 3qfa_A          164 NNK--GKEKIYSAERFLIATG--ERPRYLGIPGDKEY---CISSDDLFSLP-YCPGKTLVVGASYVALECAGFLAGIGLD  235 (519)
T ss_dssp             CTT--CCCCEEEEEEEEECCC--EEECCCCCTTHHHH---CBCHHHHTTCS-SCCCSEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             cCC--CCEEEEECCEEEEECC--CCcCCCCCCCccCc---eEcHHHHhhhh-hcCCeEEEECCcHHHHHHHHHHHHcCCe
Confidence            433  3334799999999999  78888888885431   22222332222 2346799999999999999999999999


Q ss_pred             EEEEecCC
Q 024975          223 VHIASRSV  230 (259)
Q Consensus       223 v~~~~r~~  230 (259)
                      |++++|..
T Consensus       236 Vtlv~~~~  243 (519)
T 3qfa_A          236 VTVMVRSI  243 (519)
T ss_dssp             EEEEESSC
T ss_pred             EEEEeccc
Confidence            99999864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.88  E-value=2.1e-23  Score=174.53  Aligned_cols=217  Identities=19%  Similarity=0.215  Sum_probs=127.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC---C------CcCceeeeCCCCCCCCCCCCCCCCCccccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG---E------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN   72 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~---~------~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (259)
                      .|||+||||||+|+++|.+|++.|.+|+|+|+.   +      .+||+|...        +|.|.+.+............
T Consensus         9 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~--------gciPsk~l~~~~~~~~~~~~   80 (483)
T 3dgh_A            9 DYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNV--------GCIPKKLMHQASLLGEAVHE   80 (483)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHH--------SHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeeccc--------CchhhHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999942   1      378888653        33332211111111000000


Q ss_pred             cccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHH-----------HHHHHhCCceeEEeceeEEEEEEeCCCcEEE
Q 024975           73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQ-----------NFAREFGVDQVVRLHTEVLNARLVESNKWKV  141 (259)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v  141 (259)
                      ..       .+.+..       ..........+..+..           ..+...+++  +..+ .+..+.  . ..+.+
T Consensus        81 ~~-------~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~a~~~~--~-~~v~v  140 (483)
T 3dgh_A           81 AA-------AYGWNV-------DDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVE--YING-LGSFVD--S-HTLLA  140 (483)
T ss_dssp             HH-------HTTBCC-------CCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EECS-EEEEEE--T-TEEEE
T ss_pred             HH-------hcCccc-------CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEe-EEEEcc--C-CEEEE
Confidence            00       011100       0001112233333222           223345666  4443 333322  2 44555


Q ss_pred             EEEecCCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccC
Q 024975          142 KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK  221 (259)
Q Consensus       142 ~~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~  221 (259)
                      ...++.   ..+.+|+||+|||  +.|..|.++|...+   ..++..+... ...+++++|||+|++|+|+|..|.+.+.
T Consensus       141 ~~~~g~---~~~~~d~lviATG--s~p~~p~i~G~~~~---~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~  211 (483)
T 3dgh_A          141 KLKSGE---RTITAQTFVIAVG--GRPRYPDIPGAVEY---GITSDDLFSL-DREPGKTLVVGAGYIGLECAGFLKGLGY  211 (483)
T ss_dssp             ECTTCC---EEEEEEEEEECCC--EEECCCSSTTHHHH---CBCHHHHTTC-SSCCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EeCCCe---EEEEcCEEEEeCC--CCcCCCCCCCcccc---cCcHHHHhhh-hhcCCcEEEECCCHHHHHHHHHHHHcCC
Confidence            544432   5799999999999  78888988887432   1222222222 2245889999999999999999999999


Q ss_pred             eEEEEecCC-----Cccccc----CCC-CCCCceEeeeeeEEee
Q 024975          222 EVHIASRSV-----ADETHE----KQP-GYDNMWLHSMVRTKKC  255 (259)
Q Consensus       222 ~v~~~~r~~-----~~~~~~----~~~-~~~~~~~~~~v~~~~~  255 (259)
                      +|++++|..     ++++.+    .+. ....++.++.|++++.
T Consensus       212 ~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~  255 (483)
T 3dgh_A          212 EPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEK  255 (483)
T ss_dssp             EEEEEESSCSSTTSCHHHHHHHHHHHHHTTCCEEETEEEEEEEE
T ss_pred             EEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEE
Confidence            999999864     222222    221 2245555677777765

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.88  E-value=4.5e-23  Score=172.45  Aligned_cols=199  Identities=17%  Similarity=0.191  Sum_probs=119.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (259)
                      .+||+|||||++|+++|..|++.|.+|+|+|+++.+||.|...        ++.|.+.++... .+..+. ....  +  
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~--------g~~psk~ll~~~~~~~~~~-~~~~--~--   72 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNV--------GCIPSKALLHNAAVIDEVR-HLAA--N--   72 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHH--------SHHHHHHHHHHHHHHHHHH-HGGG--G--
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeee--------cccchHHHHHHHHHHHHHH-HHHh--C--
Confidence            3799999999999999999999999999999988899887542        121111111100 011110 0000  0  


Q ss_pred             cCCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec--------CC
Q 024975           81 QAYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK--------DD  148 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g--------~~  148 (259)
                       ..++....   ..+.......    ..+...+...+.+.+++  ++.++.+.   ..+ +.+.+...++        ++
T Consensus        73 -gi~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~---~~~-~~v~v~~~~g~~~~~~~~~g  142 (482)
T 1ojt_A           73 -GIKYPEPE---LDIDMLRAYKDGVVSRLTGGLAGMAKSRKVD--VIQGDGQF---LDP-HHLEVSLTAGDAYEQAAPTG  142 (482)
T ss_dssp             -TCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEEEEEEE---EET-TEEEEEEEEEEETTEEEEEE
T ss_pred             -CcccCCCc---cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEeeEEEE---ccC-CEEEEEecCCcccccccccC
Confidence             01100000   0000000000    11222344555667888  77776544   233 5677765443        12


Q ss_pred             ceEEEEeCEEEEccCCCCCCccCC-CCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEe
Q 024975          149 VVEEETFDAVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS  227 (259)
Q Consensus       149 ~~~~~~ad~VIlAtG~~s~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~  227 (259)
                      +...+.||+||+|||  +.|..|+ ++ ...   ...+........ ..+++++|||+|++|+|+|..|.+.|.+|++++
T Consensus       143 ~~~~i~ad~lViAtG--s~p~~~~~i~-~~~---~v~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~  215 (482)
T 1ojt_A          143 EKKIVAFKNCIIAAG--SRVTKLPFIP-EDP---RIIDSSGALALK-EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVE  215 (482)
T ss_dssp             EEEEEEEEEEEECCC--EEECCCSSCC-CCT---TEECHHHHTTCC-CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             cceEEEcCEEEECCC--CCCCCCCCCC-ccC---cEEcHHHHhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence            224789999999999  5676665 44 221   233333333322 236899999999999999999999999999999


Q ss_pred             cCC
Q 024975          228 RSV  230 (259)
Q Consensus       228 r~~  230 (259)
                      |.+
T Consensus       216 ~~~  218 (482)
T 1ojt_A          216 MMD  218 (482)
T ss_dssp             SSS
T ss_pred             ECC
Confidence            987

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.88  E-value=3.7e-23  Score=172.95  Aligned_cols=199  Identities=16%  Similarity=0.209  Sum_probs=119.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccc-cccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS-SLYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   80 (259)
                      ++||+||||||+|+++|..|++.|.+|+|+|+.+.+||.|...        ++.|.+.++.. ..+..+..........+
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~--------g~~psk~l~~~~~~~~~~~~~~~~~gi~~   76 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNV--------GCIPSKALLNNSHLFHQMHTEAQKRGIDV   76 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHHTSGGGTEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCcccee--------ccHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            3799999999999999999999999999999988899988643        22221111111 01111110000001100


Q ss_pred             -cCCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEE---
Q 024975           81 -QAYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE---  152 (259)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~---  152 (259)
                       ......        +.......    ..+...+.+.+.+.+++  ++.++.+..    +.+.+.|.+.++.  ...   
T Consensus        77 ~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~~----~~~~v~V~~~~G~--~~~~~~  140 (478)
T 1v59_A           77 NGDIKIN--------VANFQKAKDDAVKQLTGGIELLFKKNKVT--YYKGNGSFE----DETKIRVTPVDGL--EGTVKE  140 (478)
T ss_dssp             CSCEEEC--------HHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESEEEES----SSSEEEEECCTTC--TTCCSS
T ss_pred             CCCCccC--------HHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEc----cCCeEEEEecCCC--cccccc
Confidence             000000        00000000    12223344556667888  888776542    2256777665441  124   


Q ss_pred             ---EEeCEEEEccCCCCCCccCCCCCCCCCCC-ceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEec
Q 024975          153 ---ETFDAVVVCNGHFSVPRLAQVPGIDSWPG-KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (259)
Q Consensus       153 ---~~ad~VIlAtG~~s~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r  228 (259)
                         +.||+||+|||  +.|+  .+||.. +.+ ...++........ .+++++|||+|++|+|+|..|.+.|.+|++++|
T Consensus       141 ~~~i~~d~lViAtG--s~p~--~~~g~~-~~~~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  214 (478)
T 1v59_A          141 DHILDVKNIIVATG--SEVT--PFPGIE-IDEEKIVSSTGALSLKE-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEF  214 (478)
T ss_dssp             CEEEEEEEEEECCC--EEEC--CCTTCC-CCSSSEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cceEEeCEEEECcC--CCCC--CCCCCC-CCCceEEcHHHHHhhhc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEe
Confidence               89999999999  4442  345543 223 2333333333222 368999999999999999999999999999999


Q ss_pred             CC
Q 024975          229 SV  230 (259)
Q Consensus       229 ~~  230 (259)
                      .+
T Consensus       215 ~~  216 (478)
T 1v59_A          215 QP  216 (478)
T ss_dssp             SS
T ss_pred             CC
Confidence            88

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.88  E-value=3.5e-23  Score=173.03  Aligned_cols=187  Identities=15%  Similarity=0.204  Sum_probs=116.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ++||+|||||++|+++|..|++.|.+|+|+|++ .+||+|...        +|.|.+.++............       .
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~~--------gc~p~k~l~~~~~~~~~~~~~-------~   83 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVNV--------GCVPKKVMWNTAVHSEFMHDH-------A   83 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHTTT-------T
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCccccc--------CccchHHHHHHHHHHHHHHHH-------H
Confidence            479999999999999999999999999999986 689988653        222221111111000000000       0


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCce
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEE-----------VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV  150 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~  150 (259)
                      .+.+..        .........           +...+...+...+++  +..+. +..+   +...+.+.. ++    
T Consensus        84 ~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~-~~~~---~~~~~~v~~-~g----  144 (478)
T 3dk9_A           84 DYGFPS--------CEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIE--IIRGH-AAFT---SDPKPTIEV-SG----  144 (478)
T ss_dssp             TTTSCC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESC-EEEC---SCSSCEEEE-TT----
T ss_pred             hcCccC--------CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEEeE-EEEe---eCCeEEEEE-CC----
Confidence            011100        001111122           223334444555777  55553 3322   224466663 22    


Q ss_pred             EEEEeCEEEEccCCCCCCccC---CCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEe
Q 024975          151 EEETFDAVVVCNGHFSVPRLA---QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS  227 (259)
Q Consensus       151 ~~~~ad~VIlAtG~~s~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~  227 (259)
                      ..+.||+||+|||  +.|..|   .++|...    ..++..+.... ..+++++|||+|++|+|+|..|.+.+.+|++++
T Consensus       145 ~~~~~d~lviAtG--~~p~~p~~~~i~G~~~----~~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~  217 (478)
T 3dk9_A          145 KKYTAPHILIATG--GMPSTPHESQIPGASL----GITSDGFFQLE-ELPGRSVIVGAGYIAVEMAGILSALGSKTSLMI  217 (478)
T ss_dssp             EEEECSCEEECCC--EEECCCCTTTSTTGGG----SBCHHHHTTCC-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEeeEEEEccC--CCCCCCCcCCCCCCce----eEchHHhhchh-hcCccEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence            3799999999999  788888   7888652    12223333222 235899999999999999999999999999999


Q ss_pred             cCC
Q 024975          228 RSV  230 (259)
Q Consensus       228 r~~  230 (259)
                      |.+
T Consensus       218 ~~~  220 (478)
T 3dk9_A          218 RHD  220 (478)
T ss_dssp             SSS
T ss_pred             eCC
Confidence            987

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.87  E-value=8e-23  Score=169.56  Aligned_cols=195  Identities=22%  Similarity=0.352  Sum_probs=124.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      ++||+|||||++|+++|..|++.  +.+|+|||+.+.++.....                                    
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~------------------------------------   46 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCG------------------------------------   46 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcC------------------------------------
Confidence            58999999999999999999998  7899999998755321110                                    


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHHHHH-HHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYL-QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                         .++...         ......++..+. .++.++.+++  ++.+++|++++.   ..+.+.+.++   ...+.+|+|
T Consensus        47 ---~p~~~~---------~~~~~~~~~~~~~~~~~~~~gi~--v~~~~~v~~i~~---~~~~v~~~~g---~~~~~~d~l  106 (449)
T 3kd9_A           47 ---IPYVVE---------GLSTPDKLMYYPPEVFIKKRGID--LHLNAEVIEVDT---GYVRVRENGG---EKSYEWDYL  106 (449)
T ss_dssp             -------------------------------CTHHHHTTCE--EETTCEEEEECS---SEEEEECSSS---EEEEECSEE
T ss_pred             ---CccccC---------CCCCHHHhhhcCHHHHHHhcCcE--EEecCEEEEEec---CCCEEEECCc---eEEEEcCEE
Confidence               000000         000002222222 3344577898  999999998864   3466655433   247899999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCCceEEcccCC-------CCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC
Q 024975          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (259)
Q Consensus       159 IlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~  231 (259)
                      |+|||  +.|+.|.++|.... + ........       ......+++++|||+|++|+|+|..|.+.+.+|++++|.+.
T Consensus       107 viAtG--~~p~~p~i~G~~~~-~-v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  182 (449)
T 3kd9_A          107 VFANG--ASPQVPAIEGVNLK-G-VFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGER  182 (449)
T ss_dssp             EECCC--EEECCCSCBTTTST-T-EECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EECCC--CCCCCCCCCCCCCC-C-EEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCc
Confidence            99999  78888888887531 1 11110000       01122568999999999999999999999999999999872


Q ss_pred             -------cc----cccCCCCCCCceEeeeeeEEeec
Q 024975          232 -------DE----THEKQPGYDNMWLHSMVRTKKCS  256 (259)
Q Consensus       232 -------~~----~~~~~~~~~~~~~~~~v~~~~~~  256 (259)
                             ++    +.+.+.+...+..++.|++++..
T Consensus       183 ~l~~~~~~~~~~~l~~~l~~~v~i~~~~~v~~i~~~  218 (449)
T 3kd9_A          183 VLRRSFDKEVTDILEEKLKKHVNLRLQEITMKIEGE  218 (449)
T ss_dssp             TTTTTSCHHHHHHHHHHHTTTSEEEESCCEEEEECS
T ss_pred             cchhhcCHHHHHHHHHHHHhCcEEEeCCeEEEEecc
Confidence                   11    22223333445556777777654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.87  E-value=1.1e-23  Score=176.34  Aligned_cols=213  Identities=17%  Similarity=0.161  Sum_probs=123.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      +||+||||||+|+++|..|++.|.+|+|+|+++ +||+|...        +|.|.+.++............+.  +++..
T Consensus         9 ~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~~~--------gciPsk~l~~~a~~~~~~~~~~~--~g~~~   77 (492)
T 3ic9_A            9 VDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCARV--------GCMPSKLLIAAADASYHASQTDL--FGIQV   77 (492)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHHHH--------SHHHHHHHHHHHHHHHHHTCGGG--GTEEC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCccccc--------ChhcCHHHHHHHHHHHHHhhhhh--cCcCC
Confidence            799999999999999999999999999999965 89988653        33333222222111110001100  00000


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-----------h-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCce
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-----------F-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV  150 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~  150 (259)
                      .             .......++.+++.+...+           . +.+  +..+ ...-   .  +.++|.+.++    
T Consensus        78 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~g-~a~~---~--~~~~v~~~~~----  132 (492)
T 3ic9_A           78 D-------------RISVNGKAVMKRIQTERDRFVGFVVESVESFDEQD--KIRG-FAKF---L--DEHTLQVDDH----  132 (492)
T ss_dssp             S-------------EEEECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG--EEES-CEEE---E--ETTEEEETTT----
T ss_pred             C-------------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCee--EEEE-EEEE---e--cCCEEEEcCC----
Confidence            0             0001113333333332221           1 222  2222 1111   1  2345666443    


Q ss_pred             EEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       151 ~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..+.||+||+|||  +.|..|.+++..  .....++..+.. ....+++++|||+|++|+|+|..|.+.+.+|++++|.+
T Consensus       133 ~~~~~d~lViATG--s~p~~p~~~~~~--~~~v~t~~~~~~-~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  207 (492)
T 3ic9_A          133 SQVIAKRIVIATG--SRPNYPEFLAAA--GSRLLTNDNLFE-LNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSG  207 (492)
T ss_dssp             EEEEEEEEEECCC--EECCCCHHHHTT--GGGEECHHHHTT-CSSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTT
T ss_pred             cEEEeCEEEEccC--CCCcCCCCCCcc--CCcEEcHHHHhh-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECC
Confidence            3799999999999  778877755432  122333333332 23346899999999999999999999999999999988


Q ss_pred             C------ccccc----CCCCCCCceEeeeeeEEeec
Q 024975          231 A------DETHE----KQPGYDNMWLHSMVRTKKCS  256 (259)
Q Consensus       231 ~------~~~~~----~~~~~~~~~~~~~v~~~~~~  256 (259)
                      .      +++.+    .+.+...++.++.|++++..
T Consensus       208 ~~l~~~d~~~~~~l~~~l~~~V~i~~~~~v~~i~~~  243 (492)
T 3ic9_A          208 SVANLQDEEMKRYAEKTFNEEFYFDAKARVISTIEK  243 (492)
T ss_dssp             CCTTCCCHHHHHHHHHHHHTTSEEETTCEEEEEEEC
T ss_pred             cccccCCHHHHHHHHHHHhhCcEEEECCEEEEEEEc
Confidence            2      22222    22222344445677777653

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.87  E-value=9.1e-23  Score=174.00  Aligned_cols=200  Identities=17%  Similarity=0.200  Sum_probs=130.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      |+||+|||||++|+++|..|++.  +.+|+|||+.+.++-...                      .....          
T Consensus         1 M~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~----------------------~l~~~----------   48 (565)
T 3ntd_A            1 MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANC----------------------GLPYH----------   48 (565)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGG----------------------GHHHH----------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcccccc----------------------CchHH----------
Confidence            57999999999999999999998  789999999876531000                      00000          


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                      +              .....+....+..++.++..+.+++  ++++++|++++... +.+.+.... ++....+.||+||
T Consensus        49 ~--------------~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~V~~id~~~-~~v~~~~~~-~g~~~~~~~d~lv  110 (565)
T 3ntd_A           49 I--------------SGEIAQRSALVLQTPESFKARFNVE--VRVKHEVVAIDRAA-KLVTVRRLL-DGSEYQESYDTLL  110 (565)
T ss_dssp             H--------------TSSSCCGGGGBCCCHHHHHHHHCCE--EETTEEEEEEETTT-TEEEEEETT-TCCEEEEECSEEE
T ss_pred             h--------------cCCcCChHHhhccCHHHHHHhcCcE--EEECCEEEEEECCC-CEEEEEecC-CCCeEEEECCEEE
Confidence            0              0000001123334556666678998  89999999998654 444444311 1233578999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceEEcccCCC--C-----CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC-
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI--P-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-  231 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~--~-----~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~-  231 (259)
                      +|||  +.|+.|.+||.+...  .........  .     ....+++++|||+|++|+|+|..|.+.+.+|++++|.+. 
T Consensus       111 iAtG--~~p~~p~ipG~~~~~--v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  186 (565)
T 3ntd_A          111 LSPG--AAPIVPPIPGVDNPL--THSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQV  186 (565)
T ss_dssp             ECCC--EEECCCCCTTCCSTT--EECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             ECCC--CCCCCCCCCCCCCCC--EEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCcc
Confidence            9999  688889998875421  111111000  0     112458999999999999999999999999999999982 


Q ss_pred             -----cccccC---CCCC--CCceEeeeeeEEee
Q 024975          232 -----DETHEK---QPGY--DNMWLHSMVRTKKC  255 (259)
Q Consensus       232 -----~~~~~~---~~~~--~~~~~~~~v~~~~~  255 (259)
                           +++.+.   .++.  ..+..++.|++++.
T Consensus       187 l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~  220 (565)
T 3ntd_A          187 MTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSY  220 (565)
T ss_dssp             CTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEE
T ss_pred             chhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEec
Confidence                 222111   1222  34444577877765

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.87  E-value=4.7e-23  Score=171.21  Aligned_cols=195  Identities=17%  Similarity=0.162  Sum_probs=119.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (259)
                      ++||+||||||+|+++|..|++.|.+|+|+|+++.+||.|...        ++.|.+.++... .+..+..  ......+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~--------g~~p~k~l~~~~~~~~~~~~--~~~g~~~   70 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRV--------GCIPSKALLETTERIYEAKK--GLLGAKV   70 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHH--CCTTEEE
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCcccee--------cchhHHHHHHHHHHHHHHhh--hcCCccc
Confidence            4799999999999999999999999999999998899998653        222211111110 1111110  0000000


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHH----HHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHE----EVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad  156 (259)
                      ......        +...+....    .+...+...+.+.+++  ++.++.+.    .+.+.+.|.+ ++    ..+.||
T Consensus        71 ~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~v~--~~~g~~~~----i~~~~~~v~~-~g----~~~~~d  131 (455)
T 2yqu_A           71 KGVELD--------LPALMAHKDKVVQANTQGVEFLFKKNGIA--RHQGTARF----LSERKVLVEE-TG----EELEAR  131 (455)
T ss_dssp             CCEEEC--------HHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEESCEEE----SSSSEEEETT-TC----CEEEEE
T ss_pred             CCCccC--------HHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEEEE----ecCCeEEEee-CC----EEEEec
Confidence            000000        000000001    1223345556667888  77765432    2224455543 33    379999


Q ss_pred             EEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       157 ~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +||+|||  +.|..|.+++...  ....+...+.... ..+++++|||+|++|+|+|..|.+.+.+|+++++.+
T Consensus       132 ~lviAtG--~~p~~~~~~g~~~--~~v~~~~~~~~~~-~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~  200 (455)
T 2yqu_A          132 YILIATG--SAPLIPPWAQVDY--ERVVTSTEALSFP-EVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMD  200 (455)
T ss_dssp             EEEECCC--EEECCCTTBCCCS--SSEECHHHHTCCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             EEEECCC--CCCCCCCCCCCCc--CcEechHHhhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCC
Confidence            9999999  6788887777543  1233333333222 235899999999999999999999999999999987

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.87  E-value=5.4e-23  Score=166.83  Aligned_cols=166  Identities=12%  Similarity=0.186  Sum_probs=116.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +.+|+|||||++|+++|..|.+.+.+|+|||+.+.++    +.                 .. ..+.....    .    
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~----y~-----------------~~-~l~~~l~g----~----   58 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLP----YY-----------------RP-RLNEIIAK----N----   58 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCC----BC-----------------GG-GHHHHHHS----C----
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCC----cc-----------------cC-hhhHHHcC----C----
Confidence            5789999999999999999977789999999987542    00                 00 00000000    0    


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                       .+                 ..++..+..+.+.+.+++  ++++++|++++...   ..|.+.++.    .+.||+||+|
T Consensus        59 -~~-----------------~~~l~~~~~~~~~~~~i~--~~~~~~V~~id~~~---~~v~~~~g~----~~~yd~lvlA  111 (385)
T 3klj_A           59 -KS-----------------IDDILIKKNDWYEKNNIK--VITSEFATSIDPNN---KLVTLKSGE----KIKYEKLIIA  111 (385)
T ss_dssp             -CC-----------------GGGTBSSCHHHHHHTTCE--EECSCCEEEEETTT---TEEEETTSC----EEECSEEEEC
T ss_pred             -CC-----------------HHHccCCCHHHHHHCCCE--EEeCCEEEEEECCC---CEEEECCCC----EEECCEEEEe
Confidence             00                 011112223444567898  99999999998654   366776654    7999999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCCCCCC-----CCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP-----FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ||  +.|+.|.+||.+    ...+.........     ..+++++|||+|++|+|+|..|.+.+.+|++++|.+
T Consensus       112 tG--~~p~~p~i~G~~----~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~  179 (385)
T 3klj_A          112 SG--SIANKIKVPHAD----EIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILE  179 (385)
T ss_dssp             CC--EEECCCCCTTCS----CEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             cC--CCcCCCCCCCCC----CeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence            99  788889898876    1222111111110     125889999999999999999999999999999988

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.87  E-value=5.9e-23  Score=171.05  Aligned_cols=197  Identities=17%  Similarity=0.206  Sum_probs=120.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccc-cccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS-SLYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   80 (259)
                      ++||+|||||++|+++|..|++.|.+|+|+|+. .+||.|...        ++.|.+.++.. ..+..+......  .++
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~~--------g~~psk~ll~~~~~~~~~~~~~~~--~g~   71 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNV--------GCIPSKALLRNAELVHIFTKDAKA--FGI   71 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHHHHTTT--TTE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCccccc--------CchhhHHHHHHHHHHHHHHHHHHh--cCC
Confidence            379999999999999999999999999999997 688877532        11111111100 001111000000  000


Q ss_pred             cCCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975           81 QAYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad  156 (259)
                      .+....       .+.......    ..+...+.+.+.+.+++  ++.++.+.    .+.+.+.+.+.++  ....+.+|
T Consensus        72 ~~~~~~-------~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~--~~~g~~~~----id~~~v~V~~~~G--~~~~~~~d  136 (464)
T 2a8x_A           72 SGEVTF-------DYGIAYDRSRKVAEGRVAGVHFLMKKNKIT--EIHGYGTF----ADANTLLVDLNDG--GTESVTFD  136 (464)
T ss_dssp             EECCEE-------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EECEEEEE----SSSSEEEEEETTS--CCEEEEEE
T ss_pred             CCCCcc-------CHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEEEE----ecCCeEEEEeCCC--ceEEEEcC
Confidence            000000       000000000    22334456666677888  77776543    2225566665443  22479999


Q ss_pred             EEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       157 ~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +||+|||  +.|..|.++|...   ...+........ ..+++++|||+|++|+|+|..|.+.+.+|++++|.+
T Consensus       137 ~lViAtG--~~~~~~~~~g~~~---~~~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  204 (464)
T 2a8x_A          137 NAIIATG--SSTRLVPGTSLSA---NVVTYEEQILSR-ELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLP  204 (464)
T ss_dssp             EEEECCC--EEECCCTTCCCBT---TEECHHHHHTCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             EEEECCC--CCCCCCCCCCCCc---eEEecHHHhhcc-ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            9999999  6778887777553   233333322222 235899999999999999999999999999999987

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.87  E-value=2.2e-22  Score=168.94  Aligned_cols=223  Identities=15%  Similarity=0.152  Sum_probs=132.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHc---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccc-cccceeccccc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRE   76 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~---g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   76 (259)
                      |++||+|||||++|+++|..|++.   |.+|+|||+++ +||+|...        ++.|.+.++.... +..+. ...  
T Consensus         1 M~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~--------g~~psk~l~~~a~~~~~~~-~~~--   68 (499)
T 1xdi_A            1 MVTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLD--------DCVPSKTFIASTGLRTELR-RAP--   68 (499)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHT--------SHHHHHHHHHHHHHHHHHT-TTT--
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCc--------CccchHHHHHHHHHHHHHH-HHH--
Confidence            579999999999999999999999   99999999988 99988653        2222111111100 00000 000  


Q ss_pred             cceecCCCCCccCCCCCCCCCCCCCHH-----------HHHHHHHHHHHHhCCceeEEeceeEEEEEEe---CCCcEEEE
Q 024975           77 LMGFQAYPFVARNYEGSVDLRRYPGHE-----------EVLRYLQNFAREFGVDQVVRLHTEVLNARLV---ESNKWKVK  142 (259)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~---~~~~~~v~  142 (259)
                      .+++..+.           ........           .+...+.+.+.+.+++  ++.++ ++.+...   +++.+.|.
T Consensus        69 ~~g~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~-~~~i~~~~~~~~~~~~V~  134 (499)
T 1xdi_A           69 HLGFHIDF-----------DDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQ--VIAGR-GELIDSTPGLARHRIKAT  134 (499)
T ss_dssp             TTTBC-----------------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESE-EEECCSSSCCSSEEEEEE
T ss_pred             hCCCcccc-----------CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeE-EEEecCcccCCCCEEEEE
Confidence            00000000           00000112           2334456666677888  77774 5555431   00234444


Q ss_pred             EEecCCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCe
Q 024975          143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE  222 (259)
Q Consensus       143 ~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~  222 (259)
                      ..+  +....+.+|++|+|||  +.|..|.++|....  ............ ..+++++|||+|++|+|+|..+.+.+.+
T Consensus       135 ~~~--g~~~~~~~d~lviATG--s~p~~p~i~g~~~~--~v~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~~l~~~g~~  207 (499)
T 1xdi_A          135 AAD--GSTSEHEADVVLVATG--ASPRILPSAQPDGE--RILTWRQLYDLD-ALPDHLIVVGSGVTGAEFVDAYTELGVP  207 (499)
T ss_dssp             CTT--SCEEEEEESEEEECCC--EEECCCGGGCCCSS--SEEEGGGGGGCS-SCCSSEEEESCSHHHHHHHHHHHHTTCC
T ss_pred             eCC--CcEEEEEeCEEEEcCC--CCCCCCCCCCCCcC--cEEehhHhhhhh-ccCCeEEEECCCHHHHHHHHHHHHcCCe
Confidence            332  2223689999999999  77888888776542  233333333222 2358899999999999999999999999


Q ss_pred             EEEEecCCC------cccccCC---CCCCCceE--eeeeeEEeec
Q 024975          223 VHIASRSVA------DETHEKQ---PGYDNMWL--HSMVRTKKCS  256 (259)
Q Consensus       223 v~~~~r~~~------~~~~~~~---~~~~~~~~--~~~v~~~~~~  256 (259)
                      |++++|.+.      +++.+.+   ++..++.+  ++.|++++..
T Consensus       208 Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~  252 (499)
T 1xdi_A          208 VTVVASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRT  252 (499)
T ss_dssp             EEEECSSSSSSCCSSHHHHHHHHHHHHHTTCEEETTCCEEEEEEC
T ss_pred             EEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEe
Confidence            999999872      2222221   22234444  4677777654

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.87  E-value=5.2e-23  Score=171.27  Aligned_cols=222  Identities=14%  Similarity=0.152  Sum_probs=129.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+||+|||||++|+++|..|+++|.+|+|+|+ +.+||+|...        ++.|.+.+.............+.......
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~--------gcip~k~l~~~~~~~~~~~~~~~~g~~~~   75 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVIR--------GCVPKKLYVYASQFAEHFEDAAGFGWTVG   75 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHH--------SHHHHHHHHHHHHHHHHHHHGGGGTEEEC
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCccccc--------CchhhHHHHHHHHHHHHHHHHHhcCcccC
Confidence            47999999999999999999999999999999 6799988653        22222111111100000000000000000


Q ss_pred             C--CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           82 A--YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        82 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                      .  ..+...      ..........+..++...+.+.+++  +..+ ++..+   +  ...+.+..+.   ..+.+|++|
T Consensus        76 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~i---~--~~~v~~~~~~---~~~~~d~lv  138 (463)
T 4dna_A           76 ESRFDWAKL------VAAKEQEIARLEGLYRKGLANAGAE--ILDT-RAELA---G--PNTVKLLASG---KTVTAERIV  138 (463)
T ss_dssp             CCEECHHHH------HHHHHHHHHHHHHHHHHHHHHHTCE--EEES-CEEES---S--SSEEEETTTT---EEEEEEEEE
T ss_pred             CCCcCHHHH------HHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEe---e--CCEEEEecCC---eEEEeCEEE
Confidence            0  000000      0000000023334455556666887  6655 44433   2  2345552111   479999999


Q ss_pred             EccCCCCCCc-cCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC------c
Q 024975          160 VCNGHFSVPR-LAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------D  232 (259)
Q Consensus       160 lAtG~~s~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~------~  232 (259)
                      +|||  +.|. .|.++|...    ...+..+... ...+++++|+|+|++|+|+|..+.+.+.+|++++|.+.      +
T Consensus       139 iAtG--~~p~~~p~i~G~~~----~~~~~~~~~~-~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~~  211 (463)
T 4dna_A          139 IAVG--GHPSPHDALPGHEL----CITSNEAFDL-PALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQ  211 (463)
T ss_dssp             ECCC--EEECCCTTSTTGGG----CBCHHHHTTC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCH
T ss_pred             EecC--CCcccCCCCCCccc----cccHHHHhhh-hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCH
Confidence            9999  7788 888888653    1222222222 22468999999999999999999999999999999872      2


Q ss_pred             ccccCC---CCCCCceE--eeeeeEEeec
Q 024975          233 ETHEKQ---PGYDNMWL--HSMVRTKKCS  256 (259)
Q Consensus       233 ~~~~~~---~~~~~~~~--~~~v~~~~~~  256 (259)
                      ++.+.+   ++..++.+  ++.|++++..
T Consensus       212 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~  240 (463)
T 4dna_A          212 DMRRGLHAAMEEKGIRILCEDIIQSVSAD  240 (463)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEC
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEc
Confidence            222221   22234444  4677777654

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.86  E-value=1.1e-22  Score=169.31  Aligned_cols=190  Identities=21%  Similarity=0.232  Sum_probs=115.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceeccccccceec
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (259)
                      +||+|||||++|+++|..|++.|.+|+|+|+.+ +||.|...        ++.|.+.++... .+..+.. ..  .+++.
T Consensus         7 ~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~--------g~iP~k~l~~~~~~~~~~~~-~~--~~g~~   74 (464)
T 2eq6_A            7 YDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNV--------GCIPTKALLHAAETLHHLKV-AE--GFGLK   74 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHT--------SHHHHHHHHHHHHHHHHHHH-HG--GGTEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCc--------ChHHHHHHHHHHHHHHHHHh-HH--hcCCC
Confidence            799999999999999999999999999999987 89988653        222221111111 1111100 00  00110


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHH----HHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRY----LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~  157 (259)
                      ..+..       .+...+....++..+    +...+.+.+++  ++.++.+. +  +. +  .+.+. +    ..+.||+
T Consensus        75 ~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-~--~~-~--~v~v~-g----~~~~~d~  134 (464)
T 2eq6_A           75 AKPEL-------DLKKLGGWRDQVVKKLTGGVGTLLKGNGVE--LLRGFARL-V--GP-K--EVEVG-G----ERYGAKS  134 (464)
T ss_dssp             CCCEE-------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESCEEE-E--ET-T--EEEET-T----EEEEEEE
T ss_pred             CCCCc-------CHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEeeeEEE-c--cC-C--EEEEc-c----EEEEeCE
Confidence            00000       000000001122222    34455567888  77765433 3  22 3  34443 2    3799999


Q ss_pred             EEEccCCCCCCccCC-CCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          158 VVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       158 VIlAtG~~s~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ||+|||  +.|..|+ +++.    ....++..+.......+++++|||+|++|+|+|..|.+.+.+|++++|.+
T Consensus       135 lViATG--s~p~~p~gi~~~----~~v~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  202 (464)
T 2eq6_A          135 LILATG--SEPLELKGFPFG----EDVWDSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMP  202 (464)
T ss_dssp             EEECCC--EEECCBTTBCCS----SSEECHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             EEEcCC--CCCCCCCCCCCC----CcEEcHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCC
Confidence            999999  6777775 5541    12344444333322245899999999999999999999999999999987

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.86  E-value=1.7e-22  Score=168.81  Aligned_cols=227  Identities=16%  Similarity=0.132  Sum_probs=127.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC------cCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ------VGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNL   73 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~------~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   73 (259)
                      +.|||+|||||++|+++|..|++.|.+|+|+|+++.      +||+|...        ++.|.+.+.... .+..+....
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~--------gciPsk~l~~~~~~~~~~~~~~   73 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNV--------GCIPSKALLDSSYKFHEAHESF   73 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHH--------SHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccc--------cHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999863      55555432        222211111100 011000000


Q ss_pred             ccccceecCCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           74 PRELMGFQAYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                      ............        .+.......    ..+...+.....+.+++  +..+..+ .   .+.+.+.+...+  +.
T Consensus        74 ~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~~~-~---~~~~~~~v~~~~--g~  137 (476)
T 3lad_A           74 KLHGISTGEVAI--------DVPTMIARKDQIVRNLTGGVASLIKANGVT--LFEGHGK-L---LAGKKVEVTAAD--GS  137 (476)
T ss_dssp             GGGTEECSCCEE--------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEESEEE-E---CSTTCEEEECTT--SC
T ss_pred             HhcCcccCCCcc--------CHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEEE-E---ecCCEEEEEcCC--Cc
Confidence            000000000000        000000000    12223334455566887  6665432 2   222556665543  33


Q ss_pred             eEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~  229 (259)
                      ...+.+|+||+|||  +.|..|+.++...  ....++...... ...+++++|||+|++|+|+|..|.+.+.+|++++|.
T Consensus       138 ~~~~~~d~lvlAtG--~~p~~~~~~~~~~--~~v~~~~~~~~~-~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~  212 (476)
T 3lad_A          138 SQVLDTENVILASG--SKPVEIPPAPVDQ--DVIVDSTGALDF-QNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAM  212 (476)
T ss_dssp             EEEECCSCEEECCC--EEECCCTTSCCCS--SSEEEHHHHTSC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             eEEEEcCEEEEcCC--CCCCCCCCCCCCc--ccEEechhhhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence            35799999999999  6666554443221  223444333332 234689999999999999999999999999999998


Q ss_pred             C------CcccccCC---CCCCCce--EeeeeeEEeec
Q 024975          230 V------ADETHEKQ---PGYDNMW--LHSMVRTKKCS  256 (259)
Q Consensus       230 ~------~~~~~~~~---~~~~~~~--~~~~v~~~~~~  256 (259)
                      +      ++++.+.+   ++..++.  .++.|++++..
T Consensus       213 ~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~  250 (476)
T 3lad_A          213 DKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVK  250 (476)
T ss_dssp             SSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEEC
T ss_pred             CCcCcccCHHHHHHHHHHHHhCCCEEEECCEEEEEEEc
Confidence            7      22222221   2223444  45677777643

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.86  E-value=5.6e-23  Score=172.17  Aligned_cols=218  Identities=18%  Similarity=0.235  Sum_probs=129.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHH-cCCcEEEEe--------eCCCcCceeeeCCCCCCCCCCCCCCCCCcccccc-cccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVVYE--------KGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRV   71 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~-~g~~v~v~e--------~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   71 (259)
                      .+||+|||||++|+++|.+|++ .|.+|+|||        +...+||+|...        +|.|.+.+...... ..+. 
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~--------gciP~k~l~~~a~~~~~~~-   77 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNV--------GCVPKKLMVTGAQYMDHLR-   77 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHH--------SHHHHHHHHHHHHHHHHHH-
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecC--------CcchHHHHHHHHHHHHHHh-
Confidence            3799999999999999999999 999999999        346789988653        22222111111110 0000 


Q ss_pred             ccccccceecCCCCCccCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHh-CCceeEEeceeEEEEEEeCCCcE
Q 024975           72 NLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREF-GVDQVVRLHTEVLNARLVESNKW  139 (259)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~  139 (259)
                      ..       ..+.+...     .. ........+..           .+...+.+. +++  ++.++ ++.+.  .   +
T Consensus        78 ~~-------~~~g~~~~-----~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~--~~~g~-~~~i~--~---~  136 (495)
T 2wpf_A           78 ES-------AGFGWEFD-----GS-SVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLD--FFLGW-GSLES--K---N  136 (495)
T ss_dssp             HH-------HTTTEECC-----GG-GCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEE--EEESE-EEEEE--T---T
T ss_pred             HH-------HhcCcccC-----Cc-ccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeE--EEEeE-EEEee--C---C
Confidence            00       00110000     00 00001122222           223334455 777  66653 55442  2   4


Q ss_pred             EEEEEecCC----ceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHH
Q 024975          140 KVKSRKKDD----VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRD  215 (259)
Q Consensus       140 ~v~~~~g~~----~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~  215 (259)
                      .|.+.+..+    ....+.||+||+|||  +.|..|.++|.+.    ..++..+.... ..+++++|||+|++|+|+|..
T Consensus       137 ~v~v~~~~~~~~~~~~~~~~d~lViATG--s~p~~p~i~G~~~----~~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~~  209 (495)
T 2wpf_A          137 VVVVRETADPKSAVKERLQADHILLATG--SWPQMPAIPGIEH----CISSNEAFYLP-EPPRRVLTVGGGFISVEFAGI  209 (495)
T ss_dssp             EEEEESSSSTTSCEEEEEEEEEEEECCC--EEECCCCCTTGGG----CEEHHHHTTCS-SCCSEEEEECSSHHHHHHHHH
T ss_pred             EEEEeecCCccCCCCeEEEcCEEEEeCC--CCcCCCCCCCccc----cccHHHHHhhh-hcCCeEEEECCCHHHHHHHHH
Confidence            555552111    024799999999999  7888888888742    23333333322 235899999999999999999


Q ss_pred             Hhcc---cCeEEEEecCCC------cccccCC---CC--CCCceEeeeeeEEeec
Q 024975          216 LAGF---AKEVHIASRSVA------DETHEKQ---PG--YDNMWLHSMVRTKKCS  256 (259)
Q Consensus       216 l~~~---~~~v~~~~r~~~------~~~~~~~---~~--~~~~~~~~~v~~~~~~  256 (259)
                      |.+.   +.+|++++|.+.      +++.+.+   ++  ...+..++.|++++..
T Consensus       210 l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~  264 (495)
T 2wpf_A          210 FNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLN  264 (495)
T ss_dssp             HHHHCCTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEEC
T ss_pred             HHhhCCCCCeEEEEEcCCccccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc
Confidence            9999   999999999872      2222221   11  2344456778887654

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.86  E-value=2.9e-22  Score=171.48  Aligned_cols=202  Identities=18%  Similarity=0.277  Sum_probs=133.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (259)
                      +++||+|||||++|+++|..|++.  +.+|+|||+.+.++  +..                                  +
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~--~~~----------------------------------~   78 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS--FAN----------------------------------C   78 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS--BCG----------------------------------G
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc--ccC----------------------------------C
Confidence            358999999999999999999998  88999999987653  000                                  0


Q ss_pred             eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                      .   +++..       .....+....+..++.++..+.+++  ++++++|++++... +.+.+... .++....+.+|+|
T Consensus        79 ~---lp~~~-------~g~~~~~~~~~~~~~~~~~~~~gi~--v~~~~~V~~id~~~-~~v~v~~~-~~g~~~~~~~d~l  144 (588)
T 3ics_A           79 G---LPYYI-------GGVITERQKLLVQTVERMSKRFNLD--IRVLSEVVKINKEE-KTITIKNV-TTNETYNEAYDVL  144 (588)
T ss_dssp             G---HHHHH-------TTSSCCGGGGBSSCHHHHHHHTTCE--EECSEEEEEEETTT-TEEEEEET-TTCCEEEEECSEE
T ss_pred             C---Cchhh-------cCcCCChHHhhccCHHHHHHhcCcE--EEECCEEEEEECCC-CEEEEeec-CCCCEEEEeCCEE
Confidence            0   00000       0000011123445667777788998  89999999998654 44444431 1233357899999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCCceEEcccCCCCC-------CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC
Q 024975          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-------PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (259)
Q Consensus       159 IlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~  231 (259)
                      |+|||  +.|..|.++|.....+ ...........       ...+++++|||+|++|+|+|..|.+.+.+|++++|.+.
T Consensus       145 viAtG--~~p~~p~i~G~~~~~~-v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  221 (588)
T 3ics_A          145 ILSPG--AKPIVPSIPGIEEAKA-LFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQ  221 (588)
T ss_dssp             EECCC--EEECCCCCTTTTTCTT-EEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             EECCC--CCCCCCCCCCcccCCC-eEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc
Confidence            99999  7888899998743332 22211111100       12468999999999999999999999999999999872


Q ss_pred             ------cccccCC---CCCCCceE--eeeeeEEee
Q 024975          232 ------DETHEKQ---PGYDNMWL--HSMVRTKKC  255 (259)
Q Consensus       232 ------~~~~~~~---~~~~~~~~--~~~v~~~~~  255 (259)
                            +++.+.+   ++..++.+  ++.|++++.
T Consensus       222 ~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~  256 (588)
T 3ics_A          222 VMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEE  256 (588)
T ss_dssp             SCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEG
T ss_pred             ccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEec
Confidence                  2222111   22234444  467777765

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.86  E-value=1.6e-21  Score=164.42  Aligned_cols=216  Identities=14%  Similarity=0.139  Sum_probs=135.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (259)
                      ++||+|||||++|+++|.+|++.|.+|+|||+++.+||.|.+.        ++.|.+.++... .+..+. ..       
T Consensus        43 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~--------g~~p~k~l~~~~~~~~~~~-~~-------  106 (523)
T 1mo9_A           43 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHN--------ACVPHHLFSDCAAELMLAR-TF-------  106 (523)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHH--------SHHHHHHHHHHHHHHHHHH-HT-------
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCccccc--------CcCchHHHHHHHHHHHHHh-hh-------
Confidence            4799999999999999999999999999999998889988643        111111000000 000000 00       


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHH-------HHH-----HHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCC
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQ-------NFA-----REFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD  148 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~-----~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~  148 (259)
                      ..+.+.      ......++...++..++.       ..+     .+.+++  +++..+++.+..     ..+.+. +  
T Consensus       107 ~~~g~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~-----~~v~~~-g--  170 (523)
T 1mo9_A          107 SGQYWF------PDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLE--YILNCPAKVIDN-----HTVEAA-G--  170 (523)
T ss_dssp             TTSTTC------CCCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCC--EEESSCCEEEET-----TEEEET-T--
T ss_pred             hhcCcH------HHHHhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcE--EEEeeEEEEeeC-----CEEEEC-C--
Confidence            001100      001112333566666554       333     556787  775667777642     244443 2  


Q ss_pred             ceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCC-CCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEe
Q 024975          149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS  227 (259)
Q Consensus       149 ~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~  227 (259)
                        ..+.+|+||+|||  +.|..|.++|... . ...+...+. .....++++++|||+|++|+|+|..+.+.+.+|++++
T Consensus       171 --~~~~~d~lViATG--s~p~~p~i~G~~~-~-~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~  244 (523)
T 1mo9_A          171 --KVFKAKNLILAVG--AGPGTLDVPGVNA-K-GVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLV  244 (523)
T ss_dssp             --EEEEBSCEEECCC--EECCCCCSTTTTS-B-TEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             --EEEEeCEEEECCC--CCCCCCCCCCccc-C-cEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence              3799999999999  7888888888754 1 133433333 2223345899999999999999999999999999999


Q ss_pred             cCCC------cccccCC---CCCCCceE--eeeeeEEee
Q 024975          228 RSVA------DETHEKQ---PGYDNMWL--HSMVRTKKC  255 (259)
Q Consensus       228 r~~~------~~~~~~~---~~~~~~~~--~~~v~~~~~  255 (259)
                      |.+.      +++.+.+   ++..++.+  ++.|++++.
T Consensus       245 ~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~  283 (523)
T 1mo9_A          245 RTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEE  283 (523)
T ss_dssp             SSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEE
T ss_pred             ecCcccccccHHHHHHHHHHHHhCCcEEEECCEEEEEEE
Confidence            9872      2222211   12234444  567777765

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.86  E-value=2.3e-22  Score=167.66  Aligned_cols=196  Identities=19%  Similarity=0.306  Sum_probs=117.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ++||+|||||++|+++|.+|++.|.+|+|||++ .+||+|...        ++.|.+.++............+..    .
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~--------g~ip~k~l~~~~~~~~~~~~~~~~----~   70 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVNV--------GCVPSKIMIRAAHIAHLRRESPFD----G   70 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHHH--------SHHHHHHHHHHHHHHHHHHCCTTT----T
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccCC--------CccchHHHHHHHHHHHHHhhhhhc----C
Confidence            489999999999999999999999999999997 689988653        222211111110000000000000    0


Q ss_pred             CCCCCccCCCCCCCCCCCC----CHHHHHHHHH-----HHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceE
Q 024975           82 AYPFVARNYEGSVDLRRYP----GHEEVLRYLQ-----NFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE  151 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~-----~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~  151 (259)
                      ..+..       .....+.    ....+..++.     +.+.+. +++  ++.+ ++..+.  . ..+.|.+.++  ...
T Consensus        71 g~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~g-~~~~~~--~-~~~~v~~~~g--~~~  135 (467)
T 1zk7_A           71 GIAAT-------VPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAIT--VVHG-EARFKD--D-QSLTVRLNEG--GER  135 (467)
T ss_dssp             TSCCC-------CCCCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEE--EEEE-EEEEEE--T-TEEEEEETTS--SEE
T ss_pred             CccCC-------CCccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeE--EEEE-EEEEcc--C-CEEEEEeCCC--ceE
Confidence            00000       0000000    0011222222     223333 666  5554 455443  2 4566665443  224


Q ss_pred             EEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          152 EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       152 ~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+.||+||+|||  +.|..|.++|.+...  .......... ...+++++|||+|++|+|+|..|.+.+.+|++++|.+
T Consensus       136 ~~~~d~lviAtG--s~p~~p~i~G~~~~~--~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  209 (467)
T 1zk7_A          136 VVMFDRCLVATG--ASPAVPPIPGLKESP--YWTSTEALAS-DTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNT  209 (467)
T ss_dssp             EEECSEEEECCC--EEECCCCCTTTTTSC--CBCHHHHHHC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEeCEEEEeCC--CCCCCCCCCCCCcCc--eecHHHHhcc-cccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECC
Confidence            799999999999  788899998875421  1222222211 1236899999999999999999999999999999987

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.86  E-value=8e-23  Score=169.98  Aligned_cols=184  Identities=18%  Similarity=0.307  Sum_probs=115.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccc-cccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   80 (259)
                      ++||+|||||++|+++|.+|++.|.+|+|||++ .+||+|...        +|.|.+.+..... +..+. ....     
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~--------gciP~k~l~~~a~~~~~~~-~~~~-----   68 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCVNV--------GCVPKKVMWYASHLAEAVR-DAPG-----   68 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHH-HGGG-----
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCcCc--------CchhHHHHHHHHHHHHHHh-hhhh-----
Confidence            489999999999999999999999999999997 689988643        2222111111110 00110 0000     


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEE-----------VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                        +.+...        ........           +...+...+.+.+++  ++.+ ++..+.  .   +.|.+ ++   
T Consensus        69 --~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~i~--~---~~v~~-~g---  126 (463)
T 2r9z_A           69 --FGVQAS--------GGTLDWPRLVAGRDRYIGAINSFWDGYVERLGIT--RVDG-HARFVD--A---HTIEV-EG---  126 (463)
T ss_dssp             --GTBCCC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEES-CEEEEE--T---TEEEE-TT---
T ss_pred             --cCcccC--------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEe-EEEEcc--C---CEEEE-CC---
Confidence              010000        00011122           222334444566887  6665 344432  2   34555 32   


Q ss_pred             eEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~  229 (259)
                       ..+.+|+||+|||  +.|..|.+||.+.    ..++..+.... ..+++++|||+|++|+|+|..|.+.+.+|++++|.
T Consensus       127 -~~~~~d~lviAtG--s~p~~p~i~G~~~----~~~~~~~~~~~-~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~  198 (463)
T 2r9z_A          127 -QRLSADHIVIATG--GRPIVPRLPGAEL----GITSDGFFALQ-QQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALE  198 (463)
T ss_dssp             -EEEEEEEEEECCC--EEECCCSCTTGGG----SBCHHHHHHCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             -EEEEcCEEEECCC--CCCCCCCCCCccc----eecHHHHhhhh-ccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcC
Confidence             3789999999999  7888888888632    12222222111 23589999999999999999999999999999998


Q ss_pred             C
Q 024975          230 V  230 (259)
Q Consensus       230 ~  230 (259)
                      +
T Consensus       199 ~  199 (463)
T 2r9z_A          199 D  199 (463)
T ss_dssp             S
T ss_pred             C
Confidence            7

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.85  E-value=4.9e-22  Score=165.85  Aligned_cols=181  Identities=17%  Similarity=0.162  Sum_probs=106.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      ++||+|||||++|+++|..|+++  +.+|+|||+++.++-...          +.       .     .+..        
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~----------gl-------~-----~~~~--------   52 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGC----------GI-------P-----YYVS--------   52 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccccccc----------cc-------c-----hhhc--------
Confidence            47999999999999999999998  899999999876531000          00       0     0000        


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                        . .+.       .....++....+..+..++..+.+++  ++++++|++++... +.+.+... .++....+.+|+||
T Consensus        53 --g-~~~-------~~~~~~~~~~~~~~~~~~~~~~~gi~--~~~~~~V~~id~~~-~~v~~~~~-~~g~~~~~~~d~lv  118 (472)
T 3iwa_A           53 --G-EVS-------NIESLQATPYNVVRDPEFFRINKDVE--ALVETRAHAIDRAA-HTVEIENL-RTGERRTLKYDKLV  118 (472)
T ss_dssp             --------------------------------------CE--EECSEEEEEEETTT-TEEEEEET-TTCCEEEEECSEEE
T ss_pred             --C-CCC-------chHHhccccchhccCHHHHhhhcCcE--EEECCEEEEEECCC-CEEEEeec-CCCCEEEEECCEEE
Confidence              0 000       00001111122445566666667888  88999999998654 44444431 11233478999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceEEcccCCC-------CCCCCCCeEEEEccCcCHHHHHHHHhcc-cCeEEEEecCC
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI-------PNPFQDQVVILIGHYASGLDIKRDLAGF-AKEVHIASRSV  230 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~v~viG~G~~a~e~a~~l~~~-~~~v~~~~r~~  230 (259)
                      +|||  +.|..|.++|... .+ .........       .....+++++|+|+|++|+|+|..+.+. +.+|++++|.+
T Consensus       119 iAtG--~~p~~p~i~G~~~-~~-v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~  193 (472)
T 3iwa_A          119 LALG--SKANRPPVEGMDL-AG-VTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELAD  193 (472)
T ss_dssp             ECCC--EEECCCSCTTTTS-BT-EEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSS
T ss_pred             EeCC--CCcCCCCCCCCCC-CC-EEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccC
Confidence            9999  7888888888752 22 121111100       0112368999999999999999999999 99999999987

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.6e-22  Score=168.93  Aligned_cols=197  Identities=18%  Similarity=0.248  Sum_probs=117.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccc-cccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   80 (259)
                      .+||+|||||++|+++|..|++.|.+|+|||++ .+||+|...        +|.|.+.+..... +..+. ...  .+++
T Consensus        11 ~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~n~--------gciP~k~l~~~~~~~~~~~-~~~--~~g~   78 (479)
T 2hqm_A           11 HYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCVNV--------GCVPKKVMWYASDLATRVS-HAN--EYGL   78 (479)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHT-TTT--TTTB
T ss_pred             cCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCccc--------CcHHHHHHHHHHHHHHHHH-hHH--hcCc
Confidence            379999999999999999999999999999997 689888642        2222111111000 00000 000  0000


Q ss_pred             cCC-CCCccCCCCCCCCCCCC----CH----HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceE
Q 024975           81 QAY-PFVARNYEGSVDLRRYP----GH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE  151 (259)
Q Consensus        81 ~~~-~~~~~~~~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~  151 (259)
                      ... +....     .....+.    ..    ..+...+...+.+.+++  +..+ +++.+   +.+.+.+...++  ...
T Consensus        79 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~i---~~~~~~v~~~~g--~~~  145 (479)
T 2hqm_A           79 YQNLPLDKE-----HLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVD--VVFG-WARFN---KDGNVEVQKRDN--TTE  145 (479)
T ss_dssp             STTSCCSGG-----GCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEE--EEEE-EEEEC---TTSCEEEEESSS--CCE
T ss_pred             ccccccccc-----cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEe-EEEEe---eCCEEEEEeCCC--cEE
Confidence            000 00000     0000000    00    12223344455566777  6655 34443   224566665443  224


Q ss_pred             EEEeCEEEEccCCCCCCccC-CCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          152 EETFDAVVVCNGHFSVPRLA-QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       152 ~~~ad~VIlAtG~~s~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+.+|+||+|||  +.|..| .+||.+.    ..++..+... ...+++++|||+|++|+|+|..|.+.+.+|++++|.+
T Consensus       146 ~~~~d~lviAtG--s~p~~p~~i~g~~~----~~~~~~~~~l-~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (479)
T 2hqm_A          146 VYSANHILVATG--GKAIFPENIPGFEL----GTDSDGFFRL-EEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGE  218 (479)
T ss_dssp             EEEEEEEEECCC--EEECCCTTSTTGGG----SBCHHHHHHC-SSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             EEEeCEEEEcCC--CCCCCCCCCCCccc----ccchHHHhcc-cccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCC
Confidence            689999999999  788888 7887642    1222222111 1245899999999999999999999999999999987

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.85  E-value=1.6e-22  Score=165.71  Aligned_cols=169  Identities=20%  Similarity=0.227  Sum_probs=113.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCc--EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHT--VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~--v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (259)
                      |+++|+|||||++|+++|..|++.|.+  |+|+|+.+.++....                     .....+..       
T Consensus         1 M~~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~---------------------~l~~~~~~-------   52 (410)
T 3ef6_A            1 MATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRP---------------------SLSKAVLD-------   52 (410)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSG---------------------GGGTHHHH-------
T ss_pred             CCCCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCc---------------------cccHHHhC-------
Confidence            678999999999999999999999987  999999865421000                     00000000       


Q ss_pred             eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                          .....       .....         ..+...+.+++  ++.+++|+.++...   +.|.+.++.    .+.||+|
T Consensus        53 ----g~~~~-------~~~~~---------~~~~~~~~~i~--~~~~~~v~~id~~~---~~v~~~~g~----~~~~d~l  103 (410)
T 3ef6_A           53 ----GSLER-------PPILA---------EADWYGEARID--MLTGPEVTALDVQT---RTISLDDGT----TLSADAI  103 (410)
T ss_dssp             ----TSSSS-------CCBSS---------CTTHHHHTTCE--EEESCCEEEEETTT---TEEEETTSC----EEECSEE
T ss_pred             ----CCCCH-------HHhcC---------CHHHHHHCCCE--EEeCCEEEEEECCC---CEEEECCCC----EEECCEE
Confidence                00000       00000         11223456888  99999999997543   567776654    7999999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCCceEEcccCC-----CCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-----IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       159 IlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |+|||  +.|+.|.+||... .+ ........     ......+++++|||+|++|+|+|..+.+.+.+|++++|.+
T Consensus       104 vlAtG--~~p~~~~ipG~~~-~~-v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~  176 (410)
T 3ef6_A          104 VIATG--SRARTMALPGSQL-PG-VVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGD  176 (410)
T ss_dssp             EECCC--EEECCCCCTTTTS-TT-EECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             EEccC--CcccCCCCCCccc-cc-eEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            99999  6788888888652 11 11111110     0012346899999999999999999999999999999998

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.85  E-value=5.5e-23  Score=172.06  Aligned_cols=224  Identities=15%  Similarity=0.182  Sum_probs=128.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHH-cCCcEEEEe--------eCCCcCceeeeCCCCCCCCCCCCCCCCCcccccc-cccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVVYE--------KGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRV   71 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~-~g~~v~v~e--------~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   71 (259)
                      ++||+|||||++|+++|.+|++ .|.+|+|+|        +...+||+|...        +|.|.+.+...... ..+. 
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~--------gciPsk~l~~~a~~~~~~~-   73 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNV--------GCVPKKLMVTGANYMDTIR-   73 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHH--------SHHHHHHHHHHHHHHHHHH-
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCC--------CcchhhHHHHHHHHHHHHH-
Confidence            5899999999999999999999 999999999        346688888653        33222221111111 1111 


Q ss_pred             ccccccceecCCCCC-ccCCCCCCCCCCCCCH----HHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEe
Q 024975           72 NLPRELMGFQAYPFV-ARNYEGSVDLRRYPGH----EEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRK  145 (259)
Q Consensus        72 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~  145 (259)
                      ....  +++...... ..     .+.......    ..+...+...+.+. +++  ++.++ ++.+.  . +  .+.+..
T Consensus        74 ~~~~--~g~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~--~~~g~-~~~i~--~-~--~v~v~~  138 (490)
T 1fec_A           74 ESAG--FGWELDRESVRP-----NWKALIAAKNKAVSGINDSYEGMFADTEGLT--FHQGF-GALQD--N-H--TVLVRE  138 (490)
T ss_dssp             HGGG--GTEECCGGGCEE-----CHHHHHHHHHHHHHHHHHHHHHHHHTSTTEE--EEESE-EEEEE--T-T--EEEEES
T ss_pred             HHHh--cCcccCCccccc-----CHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE--EEEeE-EEEee--C-C--EEEEEe
Confidence            0000  011000000 00     000000000    12222334444555 777  66664 55543  2 3  344431


Q ss_pred             ---cCCc-eEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcc--
Q 024975          146 ---KDDV-VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGF--  219 (259)
Q Consensus       146 ---g~~~-~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~--  219 (259)
                         .++. ...+.||+||+|||  +.|..|.++|.+.    ...+..+.... ..+++++|||+|++|+|+|..|.+.  
T Consensus       139 ~~~~~g~~~~~~~~d~lviAtG--s~p~~p~i~g~~~----~~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~~l~~~~~  211 (490)
T 1fec_A          139 SADPNSAVLETLDTEYILLATG--SWPQHLGIEGDDL----CITSNEAFYLD-EAPKRALCVGGGYISIEFAGIFNAYKA  211 (490)
T ss_dssp             SSSTTSCEEEEEEEEEEEECCC--EEECCCCSBTGGG----CBCHHHHTTCS-SCCSEEEEECSSHHHHHHHHHHHHHSC
T ss_pred             eccCCCCceEEEEcCEEEEeCC--CCCCCCCCCCccc----eecHHHHhhhh-hcCCeEEEECCCHHHHHHHHHHHhhcc
Confidence               1111 14799999999999  7888888887632    12222222222 2358999999999999999999999  


Q ss_pred             -cCeEEEEecCCC------cccccCC---CCCCCce--EeeeeeEEeec
Q 024975          220 -AKEVHIASRSVA------DETHEKQ---PGYDNMW--LHSMVRTKKCS  256 (259)
Q Consensus       220 -~~~v~~~~r~~~------~~~~~~~---~~~~~~~--~~~~v~~~~~~  256 (259)
                       +.+|++++|.+.      +++.+.+   ++..++.  .++.|++++..
T Consensus       212 ~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~  260 (490)
T 1fec_A          212 RGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKN  260 (490)
T ss_dssp             TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEEC
T ss_pred             CcCeEEEEEcCCCcccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc
Confidence             999999999872      2222222   2223444  45777777654

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.85  E-value=2e-22  Score=168.64  Aligned_cols=188  Identities=13%  Similarity=0.177  Sum_probs=115.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      +||+|||||++|+++|..|+++|.+|+|+|+ +.+||+|...        ++.|.+.++............       ..
T Consensus        27 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~--------gcip~k~l~~~a~~~~~~~~~-------~~   90 (484)
T 3o0h_A           27 FDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVIR--------GCVPKKLYFYASQYAQEFSKS-------IG   90 (484)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHH--------SHHHHHHHHHHHHHHHHHHHH-------GG
T ss_pred             CCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceecc--------CccccHHHHHHHHHHHHHHHH-------Hh
Confidence            7999999999999999999999999999999 6799988653        222221111111000000000       00


Q ss_pred             CCCCccCCCCCCCCCCCC--------CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEE-ecCCceEEE
Q 024975           83 YPFVARNYEGSVDLRRYP--------GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR-KKDDVVEEE  153 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~-~g~~~~~~~  153 (259)
                      +.+...     .....+.        ....+...+...+.+.+++  +..+ .+..+.  .   ..+.+. ++    ..+
T Consensus        91 ~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~i~--~---~~v~v~~~~----~~~  153 (484)
T 3o0h_A           91 FGWKYA-----DPIFNWEKLVAAKNKEISRLEGLYREGLQNSNVH--IYES-RAVFVD--E---HTLELSVTG----ERI  153 (484)
T ss_dssp             GTBCCC-----CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEES-CEEEEE--T---TEEEETTTC----CEE
T ss_pred             CCcccC-----CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEe-EEEEee--C---CEEEEecCC----eEE
Confidence            111000     0000000        0023344455566666887  6555 444443  1   244443 32    379


Q ss_pred             EeCEEEEccCCCCCCc-cCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          154 TFDAVVVCNGHFSVPR-LAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       154 ~ad~VIlAtG~~s~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+|++|+|||  +.|. .|.++|....    .....+... ...+++++|+|+|++|+|+|..+.+.+.+|+++.|.+
T Consensus       154 ~~d~lviAtG--~~p~~~p~i~G~~~~----~~~~~~~~~-~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~  224 (484)
T 3o0h_A          154 SAEKILIATG--AKIVSNSAIKGSDLC----LTSNEIFDL-EKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGD  224 (484)
T ss_dssp             EEEEEEECCC--EEECCC--CBTGGGS----BCTTTGGGC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             EeCEEEEccC--CCcccCCCCCCcccc----ccHHHHHhH-HhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            9999999999  6787 8888886531    111122111 2246899999999999999999999999999999987

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.85  E-value=9.2e-23  Score=169.09  Aligned_cols=194  Identities=15%  Similarity=0.235  Sum_probs=115.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccccc-ccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   80 (259)
                      ++||+|||||++|+++|.+|++.|.+|+|+|++ .+||.|...        +|.|.+.+.....+ ..+...........
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~--------gciP~k~l~~~a~~~~~~~~~~~~~g~~~   74 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNV--------GCVPKKVMWHAAQIREAIHMYGPDYGFDT   74 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHHTTGGGGTEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCccccc--------CccChHHHHHHHHHHHHHHHHHHhcCccC
Confidence            489999999999999999999999999999997 689988643        22222211111100 00000000000000


Q ss_pred             c--CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           81 Q--AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                      .  ...+....    .....+  ...+...+...+.+.+++  ++.++ ++.+.  .   ..|.+ ++    ..+.||+|
T Consensus        75 ~~~~~~~~~l~----~~~~~~--~~~~~~~~~~~~~~~~v~--~~~g~-~~~i~--~---~~v~~-~g----~~~~~d~l  135 (450)
T 1ges_A           75 TINKFNWETLI----ASRTAY--IDRIHTSYENVLGKNNVD--VIKGF-ARFVD--A---KTLEV-NG----ETITADHI  135 (450)
T ss_dssp             EEEEECHHHHH----HHHHHH--HHHHHHHHHHHHHHTTCE--EEESC-CEEEE--T---TEEEE-TT----EEEEEEEE
T ss_pred             CCCccCHHHHH----HHHHHH--HHHHHHHHHHHHHhCCCE--EEEeE-EEEec--C---CEEEE-CC----EEEEeCEE
Confidence            0  00000000    000000  012223334444566887  66653 44442  2   24444 32    37999999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       159 IlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |+|||  +.|..|.+||.+.    ..++..+.... ..+++++|||+|++|+|+|..|.+.+.+|++++|.+
T Consensus       136 viAtG--s~p~~p~i~g~~~----~~~~~~~~~~~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  200 (450)
T 1ges_A          136 LIATG--GRPSHPDIPGVEY----GIDSDGFFALP-ALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD  200 (450)
T ss_dssp             EECCC--EEECCCCSTTGGG----SBCHHHHHHCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             EECCC--CCCCCCCCCCccc----eecHHHhhhhh-hcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCC
Confidence            99999  7888888888642    12222222111 235899999999999999999999999999999987

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.85  E-value=2.4e-21  Score=160.88  Aligned_cols=200  Identities=19%  Similarity=0.237  Sum_probs=125.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      +||+|||||++|+++|..|++.  |.+|+|+|+.+.++....                 .+.  .+.  ..     .  +
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-----------------~~~--~~~--~g-----~--~   52 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSC-----------------GIA--LYL--GK-----E--I   52 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGG-----------------GHH--HHH--TT-----C--B
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccc-----------------cch--hhh--cC-----C--c
Confidence            5899999999999999999998  999999999865421000                 000  000  00     0  0


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                      ....+                 .++...+.+.+.+.+++  ++.+++|+.++..+ +.+.+.... ++....+.+|+||+
T Consensus        53 ~~~~~-----------------~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~-~~v~v~~~~-~g~~~~~~~d~lvi  111 (452)
T 2cdu_A           53 KNNDP-----------------RGLFYSSPEELSNLGAN--VQMRHQVTNVDPET-KTIKVKDLI-TNEEKTEAYDKLIM  111 (452)
T ss_dssp             GGGCG-----------------GGGBSCCHHHHHHTTCE--EEESEEEEEEEGGG-TEEEEEETT-TCCEEEEECSEEEE
T ss_pred             ccCCH-----------------HHhhhcCHHHHHHcCCE--EEeCCEEEEEEcCC-CEEEEEecC-CCceEEEECCEEEE
Confidence            00000                 01111112334467888  88899999987654 444443211 12224799999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCCceEEcccCCCC-----CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC----
Q 024975          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----  231 (259)
Q Consensus       161 AtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~----  231 (259)
                      |||  +.|..|.++|... . ...+...+...     ....+++++|||+|++|+|+|..|.+.+.+|++++|.+.    
T Consensus       112 AtG--s~p~~p~i~g~~~-~-~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  187 (452)
T 2cdu_A          112 TTG--SKPTVPPIPGIDS-S-RVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYK  187 (452)
T ss_dssp             CCC--EEECCCCCTTTTS-T-TEEECSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTT
T ss_pred             ccC--CCcCCCCCCCCCC-C-CEEEeCcHHHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhh
Confidence            999  7888888888753 1 22322111111     112468999999999999999999999999999999872    


Q ss_pred             ---cccccCC---C--CCCCceEeeeeeEEee
Q 024975          232 ---DETHEKQ---P--GYDNMWLHSMVRTKKC  255 (259)
Q Consensus       232 ---~~~~~~~---~--~~~~~~~~~~v~~~~~  255 (259)
                         +++.+.+   +  ....++.++.|++++.
T Consensus       188 ~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~  219 (452)
T 2cdu_A          188 YFDKEFTDILAKDYEAHGVNLVLGSKVAAFEE  219 (452)
T ss_dssp             TSCHHHHHHHHHHHHHTTCEEEESSCEEEEEE
T ss_pred             hhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEc
Confidence               1221111   1  1234455677887765

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.85  E-value=1.1e-21  Score=161.84  Aligned_cols=201  Identities=12%  Similarity=0.100  Sum_probs=124.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      ++|+||||||+|+++|..|++.|  .+|+|+|+++..+....                      ..+.+..         
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~----------------------~l~~~~~---------   49 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC----------------------ALPYVIG---------   49 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGG----------------------GHHHHHT---------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcc----------------------hhHHHHc---------
Confidence            47999999999999999999987  47999999864421100                      0000000         


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEE
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVV  159 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VI  159 (259)
                       ......       ......       ...++.++.+++  ++.+++|+.++... +.  +.+..+ ++....+.||++|
T Consensus        50 -~~~~~~-------~~~~~~-------~~~~~~~~~~i~--~~~~~~V~~id~~~-~~--~~~~~~~~~~~~~~~yd~lV  109 (437)
T 4eqs_A           50 -EVVEDR-------RYALAY-------TPEKFYDRKQIT--VKTYHEVIAINDER-QT--VSVLNRKTNEQFEESYDKLI  109 (437)
T ss_dssp             -TSSCCG-------GGTBCC-------CHHHHHHHHCCE--EEETEEEEEEETTT-TE--EEEEETTTTEEEEEECSEEE
T ss_pred             -CCccch-------hhhhhc-------CHHHHHHhcCCE--EEeCCeEEEEEccC-cE--EEEEeccCCceEEEEcCEEE
Confidence             000000       000000       012344567888  88999999987654 33  333332 2444678999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceEEcccCCCC--CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC------C
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP--NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV------A  231 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~------~  231 (259)
                      +|||  +.|+.|.+++...+.............  .....++++|+|+|++|+|+|..+.+.+.+||+++|.+      +
T Consensus       110 IATG--s~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d  187 (437)
T 4eqs_A          110 LSPG--ASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMD  187 (437)
T ss_dssp             ECCC--EEECCCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSC
T ss_pred             ECCC--CccccccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccccc
Confidence            9999  778888887754322211111100000  01135789999999999999999999999999999998      2


Q ss_pred             cccccCC-----CCCCCceEeeeeeEEeec
Q 024975          232 DETHEKQ-----PGYDNMWLHSMVRTKKCS  256 (259)
Q Consensus       232 ~~~~~~~-----~~~~~~~~~~~v~~~~~~  256 (259)
                      +++.+.+     .....+..++.|+++++.
T Consensus       188 ~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~  217 (437)
T 4eqs_A          188 ADMNQPILDELDKREIPYRLNEEINAINGN  217 (437)
T ss_dssp             GGGGHHHHHHHHHTTCCEEESCCEEEEETT
T ss_pred             chhHHHHHHHhhccceEEEeccEEEEecCC
Confidence            3333222     122456667788777654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.84  E-value=4.8e-22  Score=160.46  Aligned_cols=163  Identities=21%  Similarity=0.327  Sum_probs=110.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      -|++|||||++|+++|..|++.| +|+|+|+++.+.  +.               +..+..    .+     .   +.  
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~--~~---------------~~~l~~----~~-----~---g~--   56 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPY--YS---------------KPMLSH----YI-----A---GF--   56 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCC--CC---------------STTHHH----HH-----T---TS--
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCc--cc---------------cchhHH----HH-----h---CC--
Confidence            58999999999999999999999 999999976431  00               000000    00     0   00  


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                      ..+                 +++..+..+.+.+.+++  ++.+++|+.++..   .+.|. .++.    .+.||+||+||
T Consensus        57 ~~~-----------------~~~~~~~~~~~~~~~v~--~~~g~~v~~id~~---~~~V~-~~g~----~~~~d~lViAT  109 (367)
T 1xhc_A           57 IPR-----------------NRLFPYSLDWYRKRGIE--IRLAEEAKLIDRG---RKVVI-TEKG----EVPYDTLVLAT  109 (367)
T ss_dssp             SCG-----------------GGGCSSCHHHHHHHTEE--EECSCCEEEEETT---TTEEE-ESSC----EEECSEEEECC
T ss_pred             CCH-----------------HHhccCCHHHHHhCCcE--EEECCEEEEEECC---CCEEE-ECCc----EEECCEEEECC
Confidence            000                 11111123334567888  8888889988753   35666 5443    79999999999


Q ss_pred             CCCCCCccCCCCCCCCCCCceEEcccCCCCCCC-----CCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          163 GHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPF-----QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       163 G~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |  +.|+.|.+||.+    ...+..........     ++++++|||+|++|+|+|..|.+.+.+|++++|.+
T Consensus       110 G--s~p~~p~i~G~~----~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  176 (367)
T 1xhc_A          110 G--ARAREPQIKGKE----YLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA  176 (367)
T ss_dssp             C--EEECCCCSBTGG----GEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             C--CCCCCCCCCCcC----CEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            9  788888888732    12221111111001     34899999999999999999999999999999987

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.84  E-value=1.8e-21  Score=161.76  Aligned_cols=187  Identities=16%  Similarity=0.223  Sum_probs=116.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (259)
                      ++||+|||||++|+++|..|++.|.+|+|+|+ +.+||+|...        ++.|.+.++... .+..+........++ 
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~--------g~~Psk~l~~~~~~~~~~~~~~~~~~~g-   74 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNI--------GCIPSKALIHVAEQFHQASRFTEPSPLG-   74 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHH--------SHHHHHHHHHHHHHHHHHHHTTSCCTTC-
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCc--------CcHhHHHHHHHHHHHHHHhhcccccccC-
Confidence            48999999999999999999999999999999 6799998643        222221111110 111111000000000 


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                        .+.          ........++..           .+...+.+.+++  ++.++.+. +  .+   ++|.+.+    
T Consensus        75 --~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~~~-~--~~---~~v~v~~----  130 (458)
T 1lvl_A           75 --ISV----------ASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVK--VVHGWAKV-L--DG---KQVEVDG----  130 (458)
T ss_dssp             --CCC----------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EECSCEEE-E--ET---TEEEETT----
T ss_pred             --ccc----------CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEEEEEEE-c--cC---CEEEEee----
Confidence              000          000111122222           234555667888  77776543 2  22   3455533    


Q ss_pred             eEEEEeCEEEEccCCCCCCccCC-CCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEec
Q 024975          150 VEEETFDAVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r  228 (259)
                       ..+.||+||+|||  +.|..|+ ++ ..   +...+...+..... .+++++|||+|++|+|+|..|.+.+.+|++++|
T Consensus       131 -~~~~~d~lviATG--s~p~~~~~~~-~~---~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~  202 (458)
T 1lvl_A          131 -QRIQCEHLLLATG--SSSVELPMLP-LG---GPVISSTEALAPKA-LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEA  202 (458)
T ss_dssp             -EEEECSEEEECCC--EEECCBTTBC-CB---TTEECHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECS
T ss_pred             -EEEEeCEEEEeCC--CCCCCCCCCC-cc---CcEecHHHHhhhhc-cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEc
Confidence             3799999999999  6676654 44 22   23344444433322 458999999999999999999999999999999


Q ss_pred             CC
Q 024975          229 SV  230 (259)
Q Consensus       229 ~~  230 (259)
                      .+
T Consensus       203 ~~  204 (458)
T 1lvl_A          203 RE  204 (458)
T ss_dssp             SS
T ss_pred             CC
Confidence            87

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.84  E-value=1.2e-21  Score=161.06  Aligned_cols=195  Identities=17%  Similarity=0.167  Sum_probs=125.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCc--EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHT--VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~--v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      ++||+|||||++|+++|..|++.|.+  |+|+|+.+.+......                     ....+..        
T Consensus         9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~---------------------l~~~~~~--------   59 (415)
T 3lxd_A            9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPP---------------------LSKEYLA--------   59 (415)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGG---------------------GGTTTTT--------
T ss_pred             CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCccc---------------------CCHHHHc--------
Confidence            36999999999999999999999987  9999998643211000                     0000000        


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                         ...               ....+.....+...+.+++  ++.+++|+.++..   .+.|.+.++.    .+.||++|
T Consensus        60 ---~~~---------------~~~~~~~~~~~~~~~~~i~--~~~~~~v~~id~~---~~~v~~~~g~----~~~~d~lv  112 (415)
T 3lxd_A           60 ---REK---------------TFERICIRPAQFWEDKAVE--MKLGAEVVSLDPA---AHTVKLGDGS----AIEYGKLI  112 (415)
T ss_dssp             ---TSS---------------CSGGGBSSCHHHHHHTTEE--EEETCCEEEEETT---TTEEEETTSC----EEEEEEEE
T ss_pred             ---CCC---------------CHHHhccCCHHHHHHCCcE--EEeCCEEEEEECC---CCEEEECCCC----EEEeeEEE
Confidence               000               0011111223444567888  8899999998754   3567776654    79999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceEEcccCCC-----CCCCC-CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC--
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI-----PNPFQ-DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--  231 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~-~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~--  231 (259)
                      +|||  +.|+.|.++|... .+ .........     ..... +++++|||+|++|+|+|..+.+.+.+|+++++.+.  
T Consensus       113 lAtG--~~~~~~~i~g~~~-~~-v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l  188 (415)
T 3lxd_A          113 WATG--GDPRRLSCVGADL-AG-VHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVL  188 (415)
T ss_dssp             ECCC--EECCCCBTTSSCC-BT-EECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             EccC--CccCCCCCCCccc-cC-EEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchh
Confidence            9999  7888888888653 11 111000000     00112 68999999999999999999999999999999882  


Q ss_pred             -----ccccc---CCCCC--CCceEeeeeeEEeec
Q 024975          232 -----DETHE---KQPGY--DNMWLHSMVRTKKCS  256 (259)
Q Consensus       232 -----~~~~~---~~~~~--~~~~~~~~v~~~~~~  256 (259)
                           +++.+   +..+.  ..+..++.|++++..
T Consensus       189 ~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~  223 (415)
T 3lxd_A          189 ARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGD  223 (415)
T ss_dssp             TTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEES
T ss_pred             hhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEec
Confidence                 11111   11222  344445778777654

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.84  E-value=3.4e-21  Score=159.73  Aligned_cols=172  Identities=19%  Similarity=0.195  Sum_probs=113.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      +||+|||||++|+++|..|++.  |.+|+|+|+.+.++.  ..          +          ....+..   .     
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~--~~----------~----------~~~~~~~---~-----   50 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF--LS----------A----------GMQLYLE---G-----   50 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB--CG----------G----------GHHHHHT---T-----
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCc--cc----------c----------cchhhhc---C-----
Confidence            4899999999999999999998  899999999875431  00          0          0000000   0     


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEe-cCCceEEEEeCEEE
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVV  159 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~ad~VI  159 (259)
                       ...                ...++..++.+.+.+.+++  ++.+++|+.+...+ +.+  .+.+ .+++...+.||+||
T Consensus        51 -~~~----------------~~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~-~~v--~~~~~~~g~~~~~~~d~lv  108 (447)
T 1nhp_A           51 -KVK----------------DVNSVRYMTGEKMESRGVN--VFSNTEITAIQPKE-HQV--TVKDLVSGEERVENYDKLI  108 (447)
T ss_dssp             -SSC----------------CGGGSBSCCHHHHHHTTCE--EEETEEEEEEETTT-TEE--EEEETTTCCEEEEECSEEE
T ss_pred             -ccC----------------CHHHhhcCCHHHHHHCCCE--EEECCEEEEEeCCC-CEE--EEEecCCCceEEEeCCEEE
Confidence             000                0011111122334456888  88899999987654 434  4433 11222358999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceEEcccCCCC-------CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|||  +.|..|.+||... .+ ..+...+...       ....+++++|||+|++|+|+|..|.+.+.+|++++|.+
T Consensus       109 iAtG--~~p~~p~i~G~~~-~~-v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~  182 (447)
T 1nhp_A          109 ISPG--AVPFELDIPGKDL-DN-IYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD  182 (447)
T ss_dssp             ECCC--EEECCCCSTTTTS-BS-EECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EcCC--CCcCCCCCCCCCC-CC-eEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCc
Confidence            9999  7788888888752 12 2222111110       11146899999999999999999999999999999987

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.83  E-value=1.7e-21  Score=166.99  Aligned_cols=194  Identities=19%  Similarity=0.275  Sum_probs=113.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC-C-------CcCceeeeCCCCCCCCCCCCCCCCCccccccccceecc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-E-------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL   73 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~-~-------~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (259)
                      .+||+||||||+|+++|..|++.|.+|+|||+. +       .+||+|...        ++.|.+.+.............
T Consensus       107 ~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~--------g~iP~~~l~~~~~~~~~~~~~  178 (598)
T 2x8g_A          107 DYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNV--------GCIPKKLMHQAGLLSHALEDA  178 (598)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHH--------SHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEecc--------CCCchHHHHHHHHHHHHHhhH
Confidence            589999999999999999999999999999973 2       366766432        111111000000000000000


Q ss_pred             ccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHH-----------HHhCCceeEEeceeEEEEEEeCCCcEEEE
Q 024975           74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFA-----------REFGVDQVVRLHTEVLNARLVESNKWKVK  142 (259)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~v~~~~~v~~i~~~~~~~~~v~  142 (259)
                             ..+.+...      .........++.+++...+           ...+++  +..+ .+..+.     .+.+.
T Consensus       179 -------~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~-~~~~~~-----~~~v~  237 (598)
T 2x8g_A          179 -------EHFGWSLD------RSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVT--YLNA-KGRLIS-----PHEVQ  237 (598)
T ss_dssp             -------HHTTCCCC------GGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EECS-EEEEEE-----TTEEE
T ss_pred             -------HhCCcccc------CCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EEEE-EEEEcC-----CCEEE
Confidence                   00100000      0000112244555544332           233555  4332 333332     23444


Q ss_pred             EEecCCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCe
Q 024975          143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE  222 (259)
Q Consensus       143 ~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~  222 (259)
                      +...++....+.||+||+|||  +.|+.|.+||...+   ..+...+... ...+++++|||+|++|+|+|..|.+.|.+
T Consensus       238 v~~~~g~~~~~~~d~lviAtG--s~p~~p~i~G~~~~---~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~  311 (598)
T 2x8g_A          238 ITDKNQKVSTITGNKIILATG--ERPKYPEIPGAVEY---GITSDDLFSL-PYFPGKTLVIGASYVALECAGFLASLGGD  311 (598)
T ss_dssp             EECTTCCEEEEEEEEEEECCC--EEECCCSSTTHHHH---CEEHHHHTTC-SSCCCSEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             EEeCCCCeEEEEeCEEEEeCC--CCCCCCCCCCcccc---eEcHHHHhhC-ccCCCEEEEECCCHHHHHHHHHHHHcCCE
Confidence            443333334689999999999  78888888886432   2233222222 23457899999999999999999999999


Q ss_pred             EEEEecCC
Q 024975          223 VHIASRSV  230 (259)
Q Consensus       223 v~~~~r~~  230 (259)
                      |++++|+.
T Consensus       312 Vtlv~~~~  319 (598)
T 2x8g_A          312 VTVMVRSI  319 (598)
T ss_dssp             EEEEESSC
T ss_pred             EEEEECCc
Confidence            99999973

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.83  E-value=1.2e-20  Score=154.42  Aligned_cols=164  Identities=15%  Similarity=0.140  Sum_probs=111.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      .+||+|||||++|+++|..|++.|.  +|+|+|+.+.++...                     ......+...       
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~---------------------~~~~~~~~~~-------   58 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDR---------------------PPLSKDFMAH-------   58 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCS---------------------GGGGTHHHHH-------
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccC---------------------CCCCHHHhCC-------
Confidence            4799999999999999999999987  599999976432000                     0000000000       


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                        ..+  ..         .+.  .        .+.+.+++  ++.+++|+.++..   .+.|.+.++.    .+.+|+||
T Consensus        59 --~~~--~~---------~~~--~--------~~~~~~v~--~~~~~~v~~i~~~---~~~v~~~~g~----~~~~d~lv  106 (408)
T 2gqw_A           59 --GDA--EK---------IRL--D--------CKRAPEVE--WLLGVTAQSFDPQ---AHTVALSDGR----TLPYGTLV  106 (408)
T ss_dssp             --CCG--GG---------SBC--C--------CTTSCSCE--EEETCCEEEEETT---TTEEEETTSC----EEECSEEE
T ss_pred             --Cch--hh---------hhH--H--------HHHHCCCE--EEcCCEEEEEECC---CCEEEECCCC----EEECCEEE
Confidence              000  00         000  0        12345777  8889889998753   3567776554    79999999


Q ss_pred             EccCCCCCCccCCC-CCCCCCCCceEEcccCC-----CCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          160 VCNGHFSVPRLAQV-PGIDSWPGKQMHSHNYR-----IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       160 lAtG~~s~~~~~~~-~g~~~~~~~~~~~~~~~-----~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|||  +.|..|.+ +|..  .+ ..+.....     ......+++++|||+|++|+|+|..|.+.+.+|++++|.+
T Consensus       107 iAtG--~~~~~~~i~~G~~--~~-v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  178 (408)
T 2gqw_A          107 LATG--AAPRALPTLQGAT--MP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP  178 (408)
T ss_dssp             ECCC--EEECCCGGGTTCS--SC-EEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             ECCC--CCCCCCCccCCCC--Cc-EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCC
Confidence            9999  67888888 8865  22 22211110     1112246899999999999999999999999999999987

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.83  E-value=3.8e-21  Score=160.64  Aligned_cols=174  Identities=21%  Similarity=0.301  Sum_probs=113.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      |+||+|||||++|+++|..|++.  |.+|+|+|+.+.++....-                      ...+..        
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~----------------------~~~~~~--------   85 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCG----------------------LPYVIS--------   85 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGG----------------------HHHHHT--------
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCC----------------------cchhhc--------
Confidence            47999999999999999999996  8999999998754311000                      000000        


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHHH-HHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVLR-YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                        . ..              ....++.. +...+.+..+++  ++.+++|+.++..+ +.+.+... .+++...+.||+|
T Consensus        86 --~-~~--------------~~~~~l~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~-~~v~v~~~-~~g~~~~~~~d~l  144 (480)
T 3cgb_A           86 --G-AI--------------ASTEKLIARNVKTFRDKYGID--AKVRHEVTKVDTEK-KIVYAEHT-KTKDVFEFSYDRL  144 (480)
T ss_dssp             --T-SS--------------SCGGGGBSSCHHHHHHTTCCE--EESSEEEEEEETTT-TEEEEEET-TTCCEEEEECSEE
T ss_pred             --C-Cc--------------CCHHHhhhcCHHHHHhhcCCE--EEeCCEEEEEECCC-CEEEEEEc-CCCceEEEEcCEE
Confidence              0 00              00011111 122233445888  88889999998654 44444331 1222246899999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCCceEEcccCCCC-------CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       159 IlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |+|||  +.|..|.++|.+. .+ ..+.......       ....+++++|||+|++|+|+|..|.+.+.+|++++|.+
T Consensus       145 viAtG--~~p~~p~i~G~~~-~~-v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  219 (480)
T 3cgb_A          145 LIATG--VRPVMPEWEGRDL-QG-VHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERND  219 (480)
T ss_dssp             EECCC--EEECCCCCBTTTS-BT-EECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred             EECCC--CcccCCCCCCccC-CC-EEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC
Confidence            99999  7888888888753 11 2221111100       01146899999999999999999999999999999987

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.83  E-value=4.9e-21  Score=158.49  Aligned_cols=160  Identities=22%  Similarity=0.314  Sum_probs=112.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHH-c------CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLR-E------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP   74 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~-~------g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (259)
                      ++||+||||||+|+++|..|.+ .      +.+|+|||+.+.++|.|.+.         +.+                  
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~g---------v~p------------------   55 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSG---------VAP------------------   55 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHT---------SCT------------------
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccc---------cCC------------------
Confidence            4799999999999999999999 7      99999999998888877541         100                  


Q ss_pred             cccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEE
Q 024975           75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET  154 (259)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~  154 (259)
                                             .++...++..++.+.+.+.+++  ++.+..+      . ..  |.++++     .+.
T Consensus        56 -----------------------~~~~~~~~~~~~~~~~~~~~v~--~~~~v~v------~-~~--v~~~~~-----~~~   96 (456)
T 1lqt_A           56 -----------------------DHPKIKSISKQFEKTAEDPRFR--FFGNVVV------G-EH--VQPGEL-----SER   96 (456)
T ss_dssp             -----------------------TCTGGGGGHHHHHHHHTSTTEE--EEESCCB------T-TT--BCHHHH-----HHH
T ss_pred             -----------------------CCCCHHHHHHHHHHHHhcCCCE--EEeeEEE------C-CE--EEECCC-----eEe
Confidence                                   0111145666777777667776  6655432      1 22  223332     378


Q ss_pred             eCEEEEccCCCCCCccCCCCCCCCCCCceEEcccC-----------CCCCCCCCCeEEEEccCcCHHHHHHHHhcc----
Q 024975          155 FDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-----------RIPNPFQDQVVILIGHYASGLDIKRDLAGF----  219 (259)
Q Consensus       155 ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~v~viG~G~~a~e~a~~l~~~----  219 (259)
                      ||+||+|||. ..++.+.+||.+ +.+ ..+...+           .......+++|+|||+|++|+|+|..|.+.    
T Consensus        97 ~d~lViAtG~-~~~~~~~ipG~~-~~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l  173 (456)
T 1lqt_A           97 YDAVIYAVGA-QSDRMLNIPGED-LPG-SIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVL  173 (456)
T ss_dssp             SSEEEECCCC-CEECCCCCTTTT-STT-EEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHH
T ss_pred             CCEEEEeeCC-CCCCCCCCCCCC-CCC-cEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhh
Confidence            9999999994 236777888876 333 2332221           122233679999999999999999999874    


Q ss_pred             ----------------c-CeEEEEecCC
Q 024975          220 ----------------A-KEVHIASRSV  230 (259)
Q Consensus       220 ----------------~-~~v~~~~r~~  230 (259)
                                      + .+|+++.|++
T Consensus       174 ~~tdi~~~~~~~l~~~g~~~V~lv~r~~  201 (456)
T 1lqt_A          174 ARTDIADHALESLRPRGIQEVVIVGRRG  201 (456)
T ss_dssp             TTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             cCCCccHHHHHHHHHCCCcEEEEEecCC
Confidence                            3 5899999987

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.83  E-value=6.3e-21  Score=157.66  Aligned_cols=160  Identities=23%  Similarity=0.279  Sum_probs=114.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+||+||||||+|+++|..|++.|++|+|||+.+.+||.+.+.         .                          +
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~g---------i--------------------------p  166 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYG---------I--------------------------P  166 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHT---------S--------------------------C
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeec---------C--------------------------C
Confidence            4789999999999999999999999999999999888877641         0                          0


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .+.              .+  .++..+..+.+.+.+++  ++.++.|.       .  .+.+++.     ...||+||+|
T Consensus       167 ~~~--------------~~--~~~~~~~~~~l~~~gv~--~~~~~~v~-------~--~v~~~~~-----~~~~d~vvlA  214 (456)
T 2vdc_G          167 GFK--------------LE--KSVVERRVKLLADAGVI--YHPNFEVG-------R--DASLPEL-----RRKHVAVLVA  214 (456)
T ss_dssp             TTT--------------SC--HHHHHHHHHHHHHTTCE--EETTCCBT-------T--TBCHHHH-----HSSCSEEEEC
T ss_pred             Ccc--------------CC--HHHHHHHHHHHHHCCcE--EEeCCEec-------c--EEEhhHh-----HhhCCEEEEe
Confidence            000              11  55666777777888998  88877642       1  1122221     2569999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEccc---------CCC--------CCCCCCCeEEEEccCcCHHHHHHHHhcccC-eE
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHN---------YRI--------PNPFQDQVVILIGHYASGLDIKRDLAGFAK-EV  223 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~---------~~~--------~~~~~~~~v~viG~G~~a~e~a~~l~~~~~-~v  223 (259)
                      ||.+ .++.+.++|... .+ ......         +..        .....+++|+|||+|.+|+|+|..+.+.+. +|
T Consensus       215 tG~~-~~~~~~ipG~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~V  291 (456)
T 2vdc_G          215 TGVY-KARDIKAPGSGL-GN-IVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSV  291 (456)
T ss_dssp             CCCC-EECCTTCSCCTT-TT-EEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEE
T ss_pred             cCCC-CCCCCCCCCCcC-CC-cEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEE
Confidence            9952 466777888652 22 221111         111        122467999999999999999999998876 59


Q ss_pred             EEEecCCC
Q 024975          224 HIASRSVA  231 (259)
Q Consensus       224 ~~~~r~~~  231 (259)
                      ++++|++.
T Consensus       292 tiv~r~~~  299 (456)
T 2vdc_G          292 KCLYRRDR  299 (456)
T ss_dssp             EEECSSCS
T ss_pred             EEEEeCCc
Confidence            99999883

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.82  E-value=4.3e-21  Score=157.10  Aligned_cols=168  Identities=15%  Similarity=0.165  Sum_probs=112.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      ++||+|||||++|+++|..|++.|.  +|+|||+.+.+.....                     .....+.         
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~---------------------~l~~~~l---------   50 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRP---------------------PLSKAYL---------   50 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSG---------------------GGGTGGG---------
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCc---------------------cCCHHHH---------
Confidence            3789999999999999999999998  8999999864321000                     0000000         


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                        ....         ..      ..+.....+...+.+++  ++. ++|+.++...   ..+.+.++.    .+.||+||
T Consensus        51 --~~~~---------~~------~~~~~~~~~~~~~~~i~--~~~-~~v~~id~~~---~~v~~~~g~----~~~~d~lv  103 (404)
T 3fg2_P           51 --KSGG---------DP------NSLMFRPEKFFQDQAIE--LIS-DRMVSIDREG---RKLLLASGT----AIEYGHLV  103 (404)
T ss_dssp             --GSCC---------CT------TSSBSSCHHHHHHTTEE--EEC-CCEEEEETTT---TEEEESSSC----EEECSEEE
T ss_pred             --CCCC---------CH------HHccCCCHHHHHhCCCE--EEE-EEEEEEECCC---CEEEECCCC----EEECCEEE
Confidence              0000         00      00001122334456887  777 8999987543   467776654    79999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCCceEEccc-----CCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHN-----YRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|||  +.|+.|.++|.+. .+ ......     ........+++++|+|+|++|+|+|..+.+.+.+|+++++.+
T Consensus       104 lAtG--~~p~~~~i~g~~~-~~-v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~  175 (404)
T 3fg2_P          104 LATG--ARNRMLDVPNASL-PD-VLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAP  175 (404)
T ss_dssp             ECCC--EEECCCCSTTTTS-TT-EECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             EeeC--CCccCCCCCCCCC-Cc-EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            9999  6788888888652 11 111000     000111246899999999999999999999999999999987

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.82  E-value=1e-20  Score=156.02  Aligned_cols=170  Identities=15%  Similarity=0.135  Sum_probs=112.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      .+||+|||||++|+++|..|++.|.  +|+|+|+.+.+.    +.                 .......+...       
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~----~~-----------------~~~l~~~~~~~-------   55 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIP----HH-----------------LPPLSKAYLAG-------   55 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCC----BC-----------------SGGGGTTTTTT-------
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCC----Cc-----------------CCCCcHHHhCC-------
Confidence            5899999999999999999999998  799999975431    00                 00000000000       


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                        ....                 ..+...+.+.+.+.+++  ++.+++|+.++...   ..|.+.++.    .+.||+||
T Consensus        56 --~~~~-----------------~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~---~~v~~~~g~----~~~~d~lv  107 (431)
T 1q1r_A           56 --KATA-----------------ESLYLRTPDAYAAQNIQ--LLGGTQVTAINRDR---QQVILSDGR----ALDYDRLV  107 (431)
T ss_dssp             --CSCS-----------------GGGBSSCHHHHHHTTEE--EECSCCEEEEETTT---TEEEETTSC----EEECSEEE
T ss_pred             --CCCh-----------------HHhcccCHHHHHhCCCE--EEeCCEEEEEECCC---CEEEECCCC----EEECCEEE
Confidence              0000                 01100112333567888  88899999998543   366666554    79999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCC-c-eEEcccCC-----CCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          160 VCNGHFSVPRLAQVPGIDSWPG-K-QMHSHNYR-----IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~~~~-~-~~~~~~~~-----~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|||  +.|+.|.++|... .+ . ........     ......+++++|||+|++|+|+|..|.+.|.+|++++|.+
T Consensus       108 iAtG--~~p~~~~i~G~~~-~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~  182 (431)
T 1q1r_A          108 LATG--GRPRPLPVASGAV-GKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA  182 (431)
T ss_dssp             ECCC--EEECCCGGGTTHH-HHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             EcCC--CCccCCCCCCccc-CCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCC
Confidence            9999  6788888887642 11 0 11111110     0112246899999999999999999999999999999987

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.82  E-value=1.9e-20  Score=152.35  Aligned_cols=167  Identities=15%  Similarity=0.189  Sum_probs=114.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      ++||+|||||++|+++|..|++.|  .+|+++|+++  |..+...                    .+...          
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--g~~~~~~--------------------~l~~~----------   51 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--GRSYSKP--------------------MLSTG----------   51 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--CCEECGG--------------------GGGGT----------
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--CCccCcc--------------------cccHH----------
Confidence            489999999999999999999998  4689999874  2222110                    00000          


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHH-HHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVL-RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                         ++.             .....++. .++.+++.+.+++  ++.+++|+.+....   +.|.+.+     ..+.||+|
T Consensus        52 ---~~~-------------~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~---~~v~~~~-----~~~~~d~l  105 (384)
T 2v3a_A           52 ---FSK-------------NKDADGLAMAEPGAMAEQLNAR--ILTHTRVTGIDPGH---QRIWIGE-----EEVRYRDL  105 (384)
T ss_dssp             ---TTT-------------TCCHHHHEEECHHHHHHHTTCE--EECSCCCCEEEGGG---TEEEETT-----EEEECSEE
T ss_pred             ---HhC-------------CCCHHHhhccCHHHHHHhCCcE--EEeCCEEEEEECCC---CEEEECC-----cEEECCEE
Confidence               000             00113332 2445566677888  88888898887543   4555542     36999999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCCceEEcccCCCC-----CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       159 IlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |+|||  +.|..|+++|...  ........+...     ....+++++|+|+|++|+|+|..|.+.+.+|++++|.+
T Consensus       106 viAtG--~~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  178 (384)
T 2v3a_A          106 VLAWG--AEPIRVPVEGDAQ--DALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCE  178 (384)
T ss_dssp             EECCC--EEECCCCCBSTTT--TCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEeCC--CCcCCCCCCCcCc--CCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            99999  7888888887642  122222211110     01236899999999999999999999999999999987

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.81  E-value=2.3e-20  Score=162.89  Aligned_cols=167  Identities=19%  Similarity=0.167  Sum_probs=110.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+||+||||||+|+++|..|+++|++|+|||+.+.+||.+.+...                                   
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~-----------------------------------  433 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAA-----------------------------------  433 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTT-----------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeeccc-----------------------------------
Confidence            479999999999999999999999999999999989888765210                                   


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                       .|.             ++....+..++...++....     ....++.+..   + ..+.++++.    .+.+|+||+|
T Consensus       434 -~pg-------------~~~~~~~~~~~~~~i~~~~~-----~~~~~v~i~~---~-~~v~~~~~~----~~~~d~vviA  486 (729)
T 1o94_A          434 -LPG-------------LGEWSYHRDYRETQITKLLK-----KNKESQLALG---Q-KPMTADDVL----QYGADKVIIA  486 (729)
T ss_dssp             -STT-------------CGGGHHHHHHHHHHHHHHHH-----HSTTCEEECS---C-CCCCHHHHH----TSCCSEEEEC
T ss_pred             -CCC-------------hHHHHHHHHHHHHHHHHhhc-----ccCCceEEEe---C-eEEehhhcc----ccCCCEEEEc
Confidence             000             00003444455444433200     0001111110   0 112222221    4789999999


Q ss_pred             cCCCCC------CccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEc--cCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          162 NGHFSV------PRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG--HYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       162 tG~~s~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG--~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ||....      |..|.++|.+.+.....+...+.......+++|+|||  +|.+|+|+|..|.+.+.+|++++|.+
T Consensus       487 tG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          487 TGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             CCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCcccccccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            995311      5667788877544444544444434445678999999  99999999999999999999999987

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.81  E-value=8.8e-21  Score=164.81  Aligned_cols=159  Identities=22%  Similarity=0.246  Sum_probs=116.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+||+|||||++|+++|..|+++|++|+|||+++.+||.+.....                                   
T Consensus       391 ~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~-----------------------------------  435 (690)
T 3k30_A          391 DARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESA-----------------------------------  435 (690)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHT-----------------------------------
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccC-----------------------------------
Confidence            479999999999999999999999999999999988888754100                                   


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                       .+.             +....++..++...+.+. +++  ++.+++|+.             .+.    ..+.+|+||+
T Consensus       436 -~p~-------------~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~-------------~~~----~~~~~d~lvl  482 (690)
T 3k30_A          436 -LPG-------------LSAWGRVKEYREAVLAELPNVE--IYRESPMTG-------------DDI----VEFGFEHVIT  482 (690)
T ss_dssp             -STT-------------CGGGGHHHHHHHHHHHTCTTEE--EESSCCCCH-------------HHH----HHTTCCEEEE
T ss_pred             -CCc-------------hhHHHHHHHHHHHHHHHcCCCE--EEECCeecH-------------HHH----hhcCCCEEEE
Confidence             000             001166778888888776 777  766654321             111    2477999999


Q ss_pred             ccCCCCC------CccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEc--cCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          161 CNGHFSV------PRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG--HYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       161 AtG~~s~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG--~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |||....      +..|.++|...  ....+...+.......+++|+|||  +|++|+|+|..|.+.+.+|+++++.+
T Consensus       483 AtG~~~~~~~~~~~~~~~i~G~~~--~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~  558 (690)
T 3k30_A          483 ATGATWRTDGVARFHTTALPIAEG--MQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGA  558 (690)
T ss_dssp             CCCEEECSSCCSSSCSSCCCBCTT--SEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCccccccccccCCCCCCCCCC--CcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccc
Confidence            9994321      45677777653  234444444444455678999999  99999999999999999999999987

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.81  E-value=2.7e-20  Score=154.27  Aligned_cols=160  Identities=24%  Similarity=0.343  Sum_probs=112.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      ++||+|||+||+|+.+|..|.+.+  .+|+|||+.+.++|.|.+.         +.                        
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g---------~~------------------------   52 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFG---------VA------------------------   52 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHT---------SC------------------------
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecc---------cC------------------------
Confidence            579999999999999999999998  9999999998887766541         00                        


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                          |             .++...++..++.+.+.+.+++  ++.++.|.       ..  |.+.+     ..+.||+||
T Consensus        53 ----p-------------~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~-------~~--V~~~~-----~~~~~d~lV   99 (460)
T 1cjc_A           53 ----P-------------DHPEVKNVINTFTQTARSDRCA--FYGNVEVG-------RD--VTVQE-----LQDAYHAVV   99 (460)
T ss_dssp             ----T-------------TCGGGGGHHHHHHHHHTSTTEE--EEBSCCBT-------TT--BCHHH-----HHHHSSEEE
T ss_pred             ----C-------------CCccHHHHHHHHHHHHHhCCcE--EEeeeEEe-------eE--EEecc-----ceEEcCEEE
Confidence                0             0111155667777777777887  77776551       11  22222     136899999


Q ss_pred             EccCCCCCC-ccCCCCCCCCCCCceEEcccC----------CCC-CCCCCCeEEEEccCcCHHHHHHHHh----------
Q 024975          160 VCNGHFSVP-RLAQVPGIDSWPGKQMHSHNY----------RIP-NPFQDQVVILIGHYASGLDIKRDLA----------  217 (259)
Q Consensus       160 lAtG~~s~~-~~~~~~g~~~~~~~~~~~~~~----------~~~-~~~~~~~v~viG~G~~a~e~a~~l~----------  217 (259)
                      +|||  +.+ +.|.+||.+. .+ ......+          ... ....+++++|||+|++|+|+|..|.          
T Consensus       100 lAtG--s~~~~~~~ipG~~~-~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~td  175 (460)
T 1cjc_A          100 LSYG--AEDHQALDIPGEEL-PG-VFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTD  175 (460)
T ss_dssp             ECCC--CCEECCCCCTTTTS-TT-EEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSC
T ss_pred             EecC--cCCCCCCCCCCCCC-Cc-EEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhcccc
Confidence            9999  554 6788888752 22 2222222          111 1235799999999999999999998          


Q ss_pred             ----------cccC-eEEEEecCCC
Q 024975          218 ----------GFAK-EVHIASRSVA  231 (259)
Q Consensus       218 ----------~~~~-~v~~~~r~~~  231 (259)
                                +.+. +|+++.|++.
T Consensus       176 i~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          176 ITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             CCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             ccHHHHHHHhhCCCcEEEEEEcCCh
Confidence                      4565 7999999883

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.80  E-value=1.8e-19  Score=161.29  Aligned_cols=200  Identities=17%  Similarity=0.159  Sum_probs=129.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+||+||||||+|+++|..|.+.|.+|+|||+++.+||.|.. .  .         +.     .              + 
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~-~--~---------k~-----~--------------i-  175 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLD-T--A---------GE-----Q--------------I-  175 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGG-S--S---------CC-----E--------------E-
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceecc-C--C---------cc-----c--------------c-
Confidence            378999999999999999999999999999999889888762 0  0         00     0              0 


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeC--------CCcEEEEEEe--cCCce
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVE--------SNKWKVKSRK--KDDVV  150 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~--------~~~~~v~~~~--g~~~~  150 (259)
                        +.             + ...++...+.+.+.+. +++  ++.+++|.++....        .+.+.+...+  ..+..
T Consensus       176 --~~-------------~-~~~~~~~~~~~~l~~~~~v~--~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~  237 (965)
T 2gag_A          176 --DG-------------M-DSSAWIEQVTSELAEAEETT--HLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERI  237 (965)
T ss_dssp             --TT-------------E-EHHHHHHHHHHHHHHSTTEE--EESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEE
T ss_pred             --CC-------------C-CHHHHHHHHHHHHhhcCCcE--EEeCCEEEeeecCCceeeeEeecccccccccccCCCCce
Confidence              00             0 0134444555555554 777  88888888876321        0111111100  00112


Q ss_pred             EEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcc---cCCC-CCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEE
Q 024975          151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSH---NYRI-PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIA  226 (259)
Q Consensus       151 ~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~---~~~~-~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~  226 (259)
                      ..+.||+||+|||  +.++.|.+||.+. .+ .+...   .+.. ....++++++|||+|++|+|+|..|.+.|.+|+++
T Consensus       238 ~~i~~d~lVlATG--s~p~~~~ipG~~~-~g-v~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv  313 (965)
T 2gag_A          238 WHIRAKQVVLATG--AHERPIVFENNDR-PG-IMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVI  313 (965)
T ss_dssp             EEEEEEEEEECCC--EEECCCCCBTCCS-TT-EEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEE
T ss_pred             EEEECCEEEECCC--CccCCCCCCCCCC-CC-EEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEE
Confidence            3689999999999  6788888888653 23 22221   1111 12335689999999999999999999999999999


Q ss_pred             ecCCCccc-ccCC-CCCCCceEeeeeeEEee
Q 024975          227 SRSVADET-HEKQ-PGYDNMWLHSMVRTKKC  255 (259)
Q Consensus       227 ~r~~~~~~-~~~~-~~~~~~~~~~~v~~~~~  255 (259)
                      ++++...- .+.+ .....++.++.|+++++
T Consensus       314 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  344 (965)
T 2gag_A          314 DARSSISAAAAQAVADGVQVISGSVVVDTEA  344 (965)
T ss_dssp             ESCSSCCHHHHHHHHTTCCEEETEEEEEEEE
T ss_pred             ECCCccchhHHHHHhCCeEEEeCCEeEEEec
Confidence            99883210 2222 12245555677777765

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.80  E-value=2e-19  Score=155.88  Aligned_cols=145  Identities=26%  Similarity=0.422  Sum_probs=107.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ++||+|||||++|+++|..|+++|++|+|+|+.+.+||.+.....                                   
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~-----------------------------------  417 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQ-----------------------------------  417 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTT-----------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeecccc-----------------------------------
Confidence            479999999999999999999999999999999888877653100                                   


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEE-EeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE-TFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~-~ad~VIl  160 (259)
                       .+..             ....++..++.+.+.+.+++  ++.++.|+.      .              .+ .||+||+
T Consensus       418 -~~~~-------------~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~------~--------------~~~~~d~lvi  461 (671)
T 1ps9_A          418 -IPGK-------------EEFYETLRYYRRMIEVTGVT--LKLNHTVTA------D--------------QLQAFDETIL  461 (671)
T ss_dssp             -STTC-------------TTHHHHHHHHHHHHHHHTCE--EEESCCCCS------S--------------SSCCSSEEEE
T ss_pred             -CCCH-------------HHHHHHHHHHHHHHHHcCCE--EEeCcEecH------H--------------HhhcCCEEEE
Confidence             0000             00144556677777788988  887765431      0              13 7999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccC
Q 024975          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK  221 (259)
Q Consensus       161 AtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~  221 (259)
                      |||  +.|+.|.++|.+.  ........+.......+++|+|||+|++|+|+|..|.+.|.
T Consensus       462 AtG--~~p~~~~i~G~~~--~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~  518 (671)
T 1ps9_A          462 ASG--IVPRTPPIDGIDH--PKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGE  518 (671)
T ss_dssp             CCC--EEECCCCCBTTTS--TTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSS
T ss_pred             ccC--CCcCCCCCCCCCC--CcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCC
Confidence            999  6888888888764  23344444433444567999999999999999999987763

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.77  E-value=5.5e-20  Score=152.00  Aligned_cols=168  Identities=15%  Similarity=0.279  Sum_probs=110.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHH---cCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLR---EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~---~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (259)
                      |+||+|||||++|+++|..|++   .+.+|+|+|+++..    .+.                 .  ..            
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~----~~~-----------------~--~~------------   48 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF----QFV-----------------P--SN------------   48 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE----ECG-----------------G--GH------------
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC----ccc-----------------C--Cc------------
Confidence            5899999999999999999999   79999999997632    100                 0  00            


Q ss_pred             eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                           ++..         .......++...+.+.+.+.+++  ++ ..+|+.++...   ..|.++++.    .+.||+|
T Consensus        49 -----~~~~---------~g~~~~~~~~~~l~~~~~~~gv~--~~-~~~v~~id~~~---~~V~~~~g~----~i~~d~l  104 (437)
T 3sx6_A           49 -----PWVG---------VGWKERDDIAFPIRHYVERKGIH--FI-AQSAEQIDAEA---QNITLADGN----TVHYDYL  104 (437)
T ss_dssp             -----HHHH---------HTSSCHHHHEEECHHHHHTTTCE--EE-CSCEEEEETTT---TEEEETTSC----EEECSEE
T ss_pred             -----cccc---------cCccCHHHHHHHHHHHHHHCCCE--EE-EeEEEEEEcCC---CEEEECCCC----EEECCEE
Confidence                 0000         00011144555566677777888  65 56899887543   266666654    7999999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCC--------CCCCeEEEEccCcCH------HHHHH----HHhccc
Q 024975          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP--------FQDQVVILIGHYASG------LDIKR----DLAGFA  220 (259)
Q Consensus       159 IlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~v~viG~G~~a------~e~a~----~l~~~~  220 (259)
                      |+|||  +.++.|.+||.....+.......+.....        ..+++++|||+|.++      +|+|.    .+.+.+
T Consensus       105 viAtG--~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g  182 (437)
T 3sx6_A          105 MIATG--PKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRG  182 (437)
T ss_dssp             EECCC--CEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             EECCC--CCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcC
Confidence            99999  78888889998764333322221111100        113457899997665      88874    445555


Q ss_pred             Ce-----EEEEecCC
Q 024975          221 KE-----VHIASRSV  230 (259)
Q Consensus       221 ~~-----v~~~~r~~  230 (259)
                      .+     |+++++.+
T Consensus       183 ~~~~~~~Vtlv~~~~  197 (437)
T 3sx6_A          183 MRDKIPSFTFITSEP  197 (437)
T ss_dssp             CGGGCSCEEEEESSS
T ss_pred             CcccCcEEEEEcCCc
Confidence            43     99999987

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.75  E-value=3.3e-19  Score=160.63  Aligned_cols=162  Identities=22%  Similarity=0.362  Sum_probs=109.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      .+||+||||||+|+++|..|++.|+ +|+|||+.+.+||.+.+.         .                          
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~---------i--------------------------  231 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE---------I--------------------------  231 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHT---------S--------------------------
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcccccc---------C--------------------------
Confidence            3689999999999999999999999 799999998888876431         0                          


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                      ..+.              .+  .++..+..+.+.+.+++  ++.++.+..      +.  +.++++.    .+.||+||+
T Consensus       232 p~~~--------------~~--~~~~~~~~~~~~~~gv~--~~~~~~v~~------~~--v~~~~~~----~~~~d~vvl  281 (1025)
T 1gte_A          232 PQFR--------------LP--YDVVNFEIELMKDLGVK--IICGKSLSE------NE--ITLNTLK----EEGYKAAFI  281 (1025)
T ss_dssp             CTTT--------------SC--HHHHHHHHHHHHTTTCE--EEESCCBST------TS--BCHHHHH----HTTCCEEEE
T ss_pred             Cccc--------------CC--HHHHHHHHHHHHHCCcE--EEcccEecc------ce--EEhhhcC----ccCCCEEEE
Confidence            0000              01  44555666777778888  888766521      11  2222221    367999999


Q ss_pred             ccCCCCCCccCCC-CCCCCCCCceEEcccC--------------CC-CCCCCCCeEEEEccCcCHHHHHHHHhcccC-eE
Q 024975          161 CNGHFSVPRLAQV-PGIDSWPGKQMHSHNY--------------RI-PNPFQDQVVILIGHYASGLDIKRDLAGFAK-EV  223 (259)
Q Consensus       161 AtG~~s~~~~~~~-~g~~~~~~~~~~~~~~--------------~~-~~~~~~~~v~viG~G~~a~e~a~~l~~~~~-~v  223 (259)
                      |||. ..|+.+.+ +|.....+ ......+              .. .....+++|+|||+|.+|+|+|..+.+.|. +|
T Consensus       282 AtGa-~~p~~l~~~~G~~~~~g-v~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~V  359 (1025)
T 1gte_A          282 GIGL-PEPKTDDIFQGLTQDQG-FYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRV  359 (1025)
T ss_dssp             CCCC-CEECCCGGGTTCCTTTT-EEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEE
T ss_pred             ecCC-CCCCCCCCCCCCCCCCC-EEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEE
Confidence            9994 14654443 45442222 2222111              11 112235699999999999999999999985 89


Q ss_pred             EEEecCC
Q 024975          224 HIASRSV  230 (259)
Q Consensus       224 ~~~~r~~  230 (259)
                      |+++|++
T Consensus       360 tvv~r~~  366 (1025)
T 1gte_A          360 FLVFRKG  366 (1025)
T ss_dssp             EEECSSC
T ss_pred             EEEEecC
Confidence            9999987

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.75  E-value=4e-19  Score=144.84  Aligned_cols=154  Identities=19%  Similarity=0.381  Sum_probs=92.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCC--CCCCCCCCccc-c-ccccceeccccccc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL--GVDPNRYPVHS-S-LYKSLRVNLPRELM   78 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~--~~~~~~~~~~~-~-~~~~~~~~~~~~~~   78 (259)
                      +||+|||||++|+++|..|+++|.+|+|+|+++.+|+.+.......+...  .+.+...+... . ....+......+..
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence            79999999999999999999999999999999888654432211111000  01110000000 0 00000000000000


Q ss_pred             ee---cCCCCCccCCCCCCCCCCCC--CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEe----CCCcEEEEEEecCCc
Q 024975           79 GF---QAYPFVARNYEGSVDLRRYP--GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV----ESNKWKVKSRKKDDV  149 (259)
Q Consensus        79 ~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~----~~~~~~v~~~~g~~~  149 (259)
                      .+   ...++...     .+...||  ....+..++.+.+.+.+++  ++++++|+++...    + +.|.|.+.++   
T Consensus        85 ~~~~~~Gi~~~~~-----~~g~~~p~~~~~~l~~~L~~~~~~~Gv~--i~~~~~v~~i~~~~~g~~-~~~~v~~~~g---  153 (401)
T 2gqf_A           85 SLVAEQGITYHEK-----ELGQLFCDEGAEQIVEMLKSECDKYGAK--ILLRSEVSQVERIQNDEK-VRFVLQVNST---  153 (401)
T ss_dssp             HHHHHTTCCEEEC-----STTEEEETTCTHHHHHHHHHHHHHHTCE--EECSCCEEEEEECCSCSS-CCEEEEETTE---
T ss_pred             HHHHhCCCceEEC-----cCCEEccCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEcccCcCC-CeEEEEECCC---
Confidence            00   00111100     1122333  4588889999999899999  9999999999876    4 5577766432   


Q ss_pred             eEEEEeCEEEEccCCCCCCc
Q 024975          150 VEEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~~~  169 (259)
                        .+++|.||+|||.++.|.
T Consensus       154 --~i~ad~VVlAtG~~s~p~  171 (401)
T 2gqf_A          154 --QWQCKNLIVATGGLSMPG  171 (401)
T ss_dssp             --EEEESEEEECCCCSSCGG
T ss_pred             --EEECCEEEECCCCccCCC
Confidence              689999999999877553

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.73  E-value=1.1e-18  Score=143.10  Aligned_cols=195  Identities=18%  Similarity=0.097  Sum_probs=118.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHH---cCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLR---EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~---~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (259)
                      |+||+|||||++|+++|..|++   .|.+|+|+|+++.++....                                    
T Consensus         1 m~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~------------------------------------   44 (409)
T 3h8l_A            1 MTKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPA------------------------------------   44 (409)
T ss_dssp             -CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCS------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccc------------------------------------
Confidence            5799999999999999999999   8999999999874321100                                    


Q ss_pred             eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                          .++...         ......++...+.+.+.+.+++  ++.+ +|+.++...   ..|.+.++.+....+.||+|
T Consensus        45 ----~~~~~~---------~~~~~~~~~~~~~~~~~~~gv~--~~~~-~v~~i~~~~---~~V~~~~g~~~~~~~~~d~l  105 (409)
T 3h8l_A           45 ----LPHVAI---------GVRDVDELKVDLSEALPEKGIQ--FQEG-TVEKIDAKS---SMVYYTKPDGSMAEEEYDYV  105 (409)
T ss_dssp             ----SCCCCS---------SCCCCCCEEEEHHHHTGGGTCE--EEEC-EEEEEETTT---TEEEEECTTSCEEEEECSEE
T ss_pred             ----hhhccc---------CCcCHHHHHHHHHHHHhhCCeE--EEEe-eEEEEeCCC---CEEEEccCCcccceeeCCEE
Confidence                000000         0000022223445555667888  7666 888887543   35777776655566999999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCC------CCCeEEEEccCc-------------------------
Q 024975          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPF------QDQVVILIGHYA-------------------------  207 (259)
Q Consensus       159 IlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~v~viG~G~-------------------------  207 (259)
                      |+|||  +.++.|.++|...   ...+...+......      ..++++|||+|+                         
T Consensus       106 ViAtG--~~~~~~~ipG~~~---~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~  180 (409)
T 3h8l_A          106 IVGIG--AHLATELVKGWDK---YGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEG  180 (409)
T ss_dssp             EECCC--CEECGGGSBTHHH---HCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCH
T ss_pred             EECCC--CCcCccCCCChhh---cCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCC
Confidence            99999  6788888887653   11122111111000      125677999992                         


Q ss_pred             CHHHHHHH----Hhccc----CeEEEEecCC-----CcccccCC---CCCCCceE--eeeeeEEeec
Q 024975          208 SGLDIKRD----LAGFA----KEVHIASRSV-----ADETHEKQ---PGYDNMWL--HSMVRTKKCS  256 (259)
Q Consensus       208 ~a~e~a~~----l~~~~----~~v~~~~r~~-----~~~~~~~~---~~~~~~~~--~~~v~~~~~~  256 (259)
                      .++|++..    +.+.+    .+|+++++.+     ++++.+.+   ++..++.+  ++.|++++..
T Consensus       181 ~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~  247 (409)
T 3h8l_A          181 PVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREH  247 (409)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTTEEEEEECSSSSSTTBCHHHHHHHHHHHHHHTCEEECSCCEEEECSS
T ss_pred             HHHHHHHHHHHHHHHcCCCCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEcCCceEEECCC
Confidence            26777754    44556    3899999976     11222211   22234554  4667777653

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.72  E-value=1.2e-19  Score=151.91  Aligned_cols=194  Identities=13%  Similarity=0.113  Sum_probs=107.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      .+||+|||||++|+++|..|++.  +.+|+|||+.+.++-...            ...+.++...... .     .....
T Consensus        11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~------------~lsk~l~~~~~~~-~-----~~~~~   72 (493)
T 1m6i_A           11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRP------------PLSKELWFSDDPN-V-----TKTLR   72 (493)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSG------------GGGTGGGCC--CT-H-----HHHCE
T ss_pred             cCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCC------------CCCHHhhcCCccc-h-----hhccc
Confidence            37899999999999999999887  889999999875531100            0000000000000 0     00001


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                      +..++....... ......|.....+.+     ..+.+++  ++.+++|++++...   ++|.+.++.    .+.||+||
T Consensus        73 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~-----~~~~gv~--~~~g~~v~~id~~~---~~V~~~~g~----~i~yd~lv  137 (493)
T 1m6i_A           73 FKQWNGKERSIY-FQPPSFYVSAQDLPH-----IENGGVA--VLTGKKVVQLDVRD---NMVKLNDGS----QITYEKCL  137 (493)
T ss_dssp             EECTTSCEEESB-SSCGGGSBCTTTTTT-----STTCEEE--EEETCCEEEEEGGG---TEEEETTSC----EEEEEEEE
T ss_pred             cccccccccccc-ccchHhhcchhhhhh-----hhcCCeE--EEcCCEEEEEECCC---CEEEECCCC----EEECCEEE
Confidence            111110000000 000000111011100     1234666  88888999988643   467776654    79999999


Q ss_pred             EccCCCCCCccCCCCCCCC--CCCceEEcccCCC-----CCCCCCCeEEEEccCcCHHHHHHHHhc----ccCeEEEEec
Q 024975          160 VCNGHFSVPRLAQVPGIDS--WPGKQMHSHNYRI-----PNPFQDQVVILIGHYASGLDIKRDLAG----FAKEVHIASR  228 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~--~~~~~~~~~~~~~-----~~~~~~~~v~viG~G~~a~e~a~~l~~----~~~~v~~~~r  228 (259)
                      +|||  +.|+.|.+++...  +............     .....+++++|||+|++|+|+|..|.+    .+.+|+++.+
T Consensus       138 iATG--s~p~~~~~~~~~~~~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~  215 (493)
T 1m6i_A          138 IATG--GTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFP  215 (493)
T ss_dssp             ECCC--EEECCCHHHHTSCHHHHHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECS
T ss_pred             ECCC--CCCCCCCCcccccccccCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEec
Confidence            9999  6776655443210  0001111100000     001136899999999999999999976    3678999988


Q ss_pred             CC
Q 024975          229 SV  230 (259)
Q Consensus       229 ~~  230 (259)
                      .+
T Consensus       216 ~~  217 (493)
T 1m6i_A          216 EK  217 (493)
T ss_dssp             SS
T ss_pred             Cc
Confidence            75

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.70  E-value=1.8e-18  Score=144.82  Aligned_cols=199  Identities=14%  Similarity=0.219  Sum_probs=114.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +++|||||||++|+++|..|.+.+.+|+|+|+++..    .+.                       .+........    
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~----~~~-----------------------PlL~~va~G~----   90 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYF----LFT-----------------------PLLPSAPVGT----   90 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEE----ECG-----------------------GGGGGTTTTS----
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCc----ccc-----------------------cchhHHhhcc----
Confidence            368999999999999999999999999999997531    110                       0000000000    


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHH--HhCCceeEEeceeEEEEEEeCCCcEEEEEEec-------------
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR--EFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-------------  146 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-------------  146 (259)
                       ..               +  .++..-+.....  +.+++   ....+|++|+... +...+....+             
T Consensus        91 -l~---------------~--~~i~~p~~~~~~~~~~~v~---~~~~~v~~ID~~~-k~V~l~~~~~~~~~~~~~~~~~~  148 (502)
T 4g6h_A           91 -VD---------------E--KSIIEPIVNFALKKKGNVT---YYEAEATSINPDR-NTVTIKSLSAVSQLYQPENHLGL  148 (502)
T ss_dssp             -SC---------------G--GGGEEEHHHHHTTCSSCEE---EEEEEEEEEEGGG-TEEEEEEEEEEEECSSSCCCCCC
T ss_pred             -cc---------------H--HHhhhhHHHHHHhhcCCeE---EEEEEEEEEEhhh-CEEEEeecccceeeccccccccc
Confidence             00               0  111111122221  12343   3456888888765 4444433211             


Q ss_pred             -CCceEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcc----c--------CC----CCCC----CCCCeEEEEcc
Q 024975          147 -DDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSH----N--------YR----IPNP----FQDQVVILIGH  205 (259)
Q Consensus       147 -~~~~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~----~--------~~----~~~~----~~~~~v~viG~  205 (259)
                       ......+.||++|+|||  +.++.+.+||..++.- .+.+.    .        +.    ....    ....+++|||+
T Consensus       149 ~~~~~~~i~YD~LViAtG--s~~~~~~ipG~~e~a~-~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGg  225 (502)
T 4g6h_A          149 HQAEPAEIKYDYLISAVG--AEPNTFGIPGVTDYGH-FLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGG  225 (502)
T ss_dssp             CTTCCEEEECSEEEECCC--CEECCTTCTTHHHHCE-ECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECC
T ss_pred             ccCCceEEeCCEEEEcCC--cccccCCccCcccccC-CCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECC
Confidence             12235799999999999  8899999998654210 00000    0        00    0000    01247999999


Q ss_pred             CcCHHHHHHHHhccc--------------CeEEEEecCC------Cccccc---CCCCCCCceE--eeeeeEEeec
Q 024975          206 YASGLDIKRDLAGFA--------------KEVHIASRSV------ADETHE---KQPGYDNMWL--HSMVRTKKCS  256 (259)
Q Consensus       206 G~~a~e~a~~l~~~~--------------~~v~~~~r~~------~~~~~~---~~~~~~~~~~--~~~v~~~~~~  256 (259)
                      |++|+|+|.+|.+..              .+|+++++.+      ++++.+   +.+++.+|++  ++.|++++..
T Consensus       226 G~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~  301 (502)
T 4g6h_A          226 GPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEK  301 (502)
T ss_dssp             SHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEETTEEEEEECSS
T ss_pred             CcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHHHHHHHHhcceeeecCceEEEEeCC
Confidence            999999999987542              5799999988      222222   2223334444  5777776643

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.68  E-value=9.5e-17  Score=134.41  Aligned_cols=160  Identities=20%  Similarity=0.200  Sum_probs=106.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      +||+|||||++|+++|.+|++. .+|+|||+++.+||.+.....                                .+..
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~--------------------------------~~~g  155 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGI--------------------------------KQEG  155 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCS--------------------------------EETT
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeecccc--------------------------------ccCC
Confidence            6899999999999999999999 999999999988877654100                                0000


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                      ++.               ...++...+.+.+ +.+++  ++++++|.++.... +.+.+...+ ++....+.+|++|+||
T Consensus       156 ~~~---------------~~~~~~~~l~~~l-~~~v~--~~~~~~v~~i~~~~-~~~~~~~~~-~~~~~~~~~d~lvlAt  215 (493)
T 1y56_A          156 FNK---------------DSRKVVEELVGKL-NENTK--IYLETSALGVFDKG-EYFLVPVVR-GDKLIEILAKRVVLAT  215 (493)
T ss_dssp             TTE---------------EHHHHHHHHHHTC-CTTEE--EETTEEECCCEECS-SSEEEEEEE-TTEEEEEEESCEEECC
T ss_pred             CCC---------------CHHHHHHHHHHHH-hcCCE--EEcCCEEEEEEcCC-cEEEEEEec-CCeEEEEECCEEEECC
Confidence            000               1144444443333 45676  88899999988765 556655433 2233468999999999


Q ss_pred             CCCCCCccCCCCCCCCCCCceEEcccCC----CCCCCCCCeEEEEccCcCHHHHHHHHhcccC
Q 024975          163 GHFSVPRLAQVPGIDSWPGKQMHSHNYR----IPNPFQDQVVILIGHYASGLDIKRDLAGFAK  221 (259)
Q Consensus       163 G~~s~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~  221 (259)
                      |  +.++.|.++|.+. .+ .+....+.    .....++++++|+|+|++++|  ..+.+.|.
T Consensus       216 G--a~~~~~~~~g~~~-~g-v~~~~~~~~~~~~~~~~~~~~vvViGgG~~gle--~~l~~~GV  272 (493)
T 1y56_A          216 G--AIDSTMLFENNDM-PG-VFRRDFALEVMNVWEVAPGRKVAVTGSKADEVI--QELERWGI  272 (493)
T ss_dssp             C--EEECCCCCTTTTS-TT-EEEHHHHHHHHHTSCBCSCSEEEEESTTHHHHH--HHHHHHTC
T ss_pred             C--CCccCCCCCCCCC-CC-EEEcHHHHHHHHhcccCCCCEEEEECCCHHHHH--HHHHhCCc
Confidence            9  6788888887653 22 22221111    112345689999999999999  45555543

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.67  E-value=6e-17  Score=132.45  Aligned_cols=156  Identities=19%  Similarity=0.310  Sum_probs=93.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCC--CCCCCCCc--cccccccceecccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG--VDPNRYPV--HSSLYKSLRVNLPREL   77 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~   77 (259)
                      .+||+|||||++|+++|..|+++|.+|+|+|+.+.+|+.+.......+....  ..+.....  .......+....+.+.
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  106 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF  106 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence            3799999999999999999999999999999999886544221111100000  00000000  0000000000001011


Q ss_pred             ceec---CCCCCccCCCCCCCCCCCC--CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEE
Q 024975           78 MGFQ---AYPFVARNYEGSVDLRRYP--GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE  152 (259)
Q Consensus        78 ~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~  152 (259)
                      ..+.   ..++...     .....|+  ....+.+.+.+.+.+.+++  ++++++|+++...+ +.|.|.+.++     .
T Consensus       107 ~~~~~~~Gi~~~~~-----~~g~~~~~~~~~~l~~~L~~~l~~~Gv~--i~~~~~V~~i~~~~-~~~~V~~~~g-----~  173 (417)
T 3v76_A          107 VALVERHGIGWHEK-----TLGQLFCDHSAKDIIRMLMAEMKEAGVQ--LRLETSIGEVERTA-SGFRVTTSAG-----T  173 (417)
T ss_dssp             HHHHHHTTCCEEEC-----STTEEEESSCHHHHHHHHHHHHHHHTCE--EECSCCEEEEEEET-TEEEEEETTE-----E
T ss_pred             HHHHHHcCCCcEEe-----eCCEEeeCCCHHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeC-CEEEEEECCc-----E
Confidence            0000   0111000     1112222  3468889999999889999  99999999999876 6688877653     6


Q ss_pred             EEeCEEEEccCCCCCCcc
Q 024975          153 ETFDAVVVCNGHFSVPRL  170 (259)
Q Consensus       153 ~~ad~VIlAtG~~s~~~~  170 (259)
                      +.||.||+|||.++.|..
T Consensus       174 i~ad~VIlAtG~~S~p~~  191 (417)
T 3v76_A          174 VDAASLVVASGGKSIPKM  191 (417)
T ss_dssp             EEESEEEECCCCSSCGGG
T ss_pred             EEeeEEEECCCCccCCCC
Confidence            999999999998876543

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.62  E-value=4.1e-16  Score=129.13  Aligned_cols=157  Identities=22%  Similarity=0.326  Sum_probs=93.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCC-CC---CCc-ccc-ccccceeccc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDP-NR---YPV-HSS-LYKSLRVNLP   74 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~-~~---~~~-~~~-~~~~~~~~~~   74 (259)
                      |.+||+|||||++|+++|..|+++|.+|+|+|+.+.+|+................+ ..   .+. ... .+..+.....
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN  104 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCH
Confidence            45899999999999999999999999999999998877543322111111000000 00   000 000 0000000000


Q ss_pred             ccccee-c--CCCCCccCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCC
Q 024975           75 RELMGF-Q--AYPFVARNYEGSVDLRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD  148 (259)
Q Consensus        75 ~~~~~~-~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~  148 (259)
                      .+...+ .  ..++...     .....||   ....+.+.|.+.+.+.+++  ++++++|+++...++..|.|.+.++. 
T Consensus       105 ~~~~~~~~~~G~~~~~~-----~~g~~~p~~~~~~~l~~~L~~~~~~~GV~--i~~~~~V~~i~~~~~~v~~V~~~~G~-  176 (447)
T 2i0z_A          105 EDIITFFENLGVKLKEE-----DHGRMFPVSNKAQSVVDALLTRLKDLGVK--IRTNTPVETIEYENGQTKAVILQTGE-  176 (447)
T ss_dssp             HHHHHHHHHTTCCEEEC-----GGGEEEETTCCHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEETTCC-
T ss_pred             HHHHHHHHhcCCceEEe-----eCCEEECCCCCHHHHHHHHHHHHHHCCCE--EEeCcEEEEEEecCCcEEEEEECCCC-
Confidence            000000 0  0011000     1112222   3477888888888888999  99999999999765333788876643 


Q ss_pred             ceEEEEeCEEEEccCCCCCC
Q 024975          149 VVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       149 ~~~~~~ad~VIlAtG~~s~~  168 (259)
                         .+.+|.||+|||.++.|
T Consensus       177 ---~i~Ad~VVlAtGg~s~~  193 (447)
T 2i0z_A          177 ---VLETNHVVIAVGGKSVP  193 (447)
T ss_dssp             ---EEECSCEEECCCCSSSG
T ss_pred             ---EEECCEEEECCCCCcCC
Confidence               69999999999987744

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.61  E-value=1.5e-14  Score=117.81  Aligned_cols=155  Identities=16%  Similarity=0.180  Sum_probs=90.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee----CCCCCCCCCCCCCCCCCccccccccceecccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY----TSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL   77 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (259)
                      .|||+||||||+|+++|+.|+++|++|+|+||.+.+|.....    .+.. ...++.......+.. .........+...
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~-l~~l~~~~~~~~~~~-~~~~~~~~~~~~~   81 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGI-LNEADIKADRSFIAN-EVKGARIYGPSEK   81 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHH-HHHTTCCCCTTTEEE-EESEEEEECTTCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHH-HHHcCCCchhhhhhc-ccceEEEEeCCCc
Confidence            489999999999999999999999999999998776532110    0000 000000000000000 0011111111110


Q ss_pred             ceecCCCCCccCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975           78 MGFQAYPFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (259)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad  156 (259)
                      ...     ... ......... ...+..+...|.+.+.+.|++  ++++++|+++...+ +.........++....+++|
T Consensus        82 ~~~-----~~~-~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~--~~~~~~v~~~~~~~-~~~~~v~~~~~~~~~~~~a~  152 (397)
T 3oz2_A           82 RPI-----ILQ-SEKAGNEVGYVLERDKFDKHLAALAAKAGAD--VWVKSPALGVIKEN-GKVAGAKIRHNNEIVDVRAK  152 (397)
T ss_dssp             SCE-----EEE-CSSSSCCCEEEECHHHHHHHHHHHHHHHTCE--EESSCCEEEEEEET-TEEEEEEEEETTEEEEEEEE
T ss_pred             eEe-----ecc-ccccCCceeEEEEHHHHHHHHHHHHHhcCcE--Eeeeeeeeeeeecc-ceeeeeeecccccceEEEEe
Confidence            000     000 000011111 246788999999999999999  99999999998876 43333333333445679999


Q ss_pred             EEEEccCCCCC
Q 024975          157 AVVVCNGHFSV  167 (259)
Q Consensus       157 ~VIlAtG~~s~  167 (259)
                      .||.|+|..|.
T Consensus       153 ~vIgAdG~~S~  163 (397)
T 3oz2_A          153 MVIAADGFESE  163 (397)
T ss_dssp             EEEECCCTTCH
T ss_pred             EEEeCCccccH
Confidence            99999997664

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.60  E-value=1.4e-14  Score=121.41  Aligned_cols=153  Identities=24%  Similarity=0.234  Sum_probs=92.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCce---eeeCCCCC--CCCCCCCCCCCCccccccccceecccc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPR   75 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (259)
                      +++||+||||||+|+++|..|+++|++|+|+|+.+.++..   ....+...  ....+.           .+.+....+.
T Consensus        10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl-----------~~~~~~~~~~   78 (500)
T 2qa1_A           10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGI-----------LPRFGEVETS   78 (500)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTC-----------GGGGCSCCBC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCC-----------HHHHHhcccc
Confidence            3589999999999999999999999999999998765311   00000000  000000           0000000000


Q ss_pred             ccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975           76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (259)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a  155 (259)
                      ....+....+...............++..+.+.|.+.+.+.+++  ++++++|++++.++ +.+++.+.++++ ...+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~~~~~a  154 (500)
T 2qa1_A           79 TQGHFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGAD--IRRGHEVLSLTDDG-AGVTVEVRGPEG-KHTLRA  154 (500)
T ss_dssp             CEEEETTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCE--EEETCEEEEEEEET-TEEEEEEEETTE-EEEEEE
T ss_pred             ccccccceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCE--EECCcEEEEEEEcC-CeEEEEEEcCCC-CEEEEe
Confidence            00001000000000000000112234578889999999888998  99999999999876 678888887654 357999


Q ss_pred             CEEEEccCCCCCC
Q 024975          156 DAVVVCNGHFSVP  168 (259)
Q Consensus       156 d~VIlAtG~~s~~  168 (259)
                      |+||.|+|.+|..
T Consensus       155 ~~vVgADG~~S~V  167 (500)
T 2qa1_A          155 AYLVGCDGGRSSV  167 (500)
T ss_dssp             SEEEECCCTTCHH
T ss_pred             CEEEECCCcchHH
Confidence            9999999987753

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.59  E-value=1.9e-14  Score=120.57  Aligned_cols=153  Identities=24%  Similarity=0.174  Sum_probs=93.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCce---eeeCCCCC--CCCCCCCCCCCCccccccccceecccc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPR   75 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (259)
                      +.+||+||||||+|+++|..|+++|++|+|+|+.+.++..   ....+...  ....+.           .+.+....+.
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl-----------~~~~~~~~~~   79 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGI-----------LPAFGPVETS   79 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTC-----------GGGGCSCCEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCC-----------HHHHHhcccc
Confidence            3589999999999999999999999999999998665311   00000000  000000           0000000000


Q ss_pred             ccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975           76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (259)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a  155 (259)
                      ....+....+...............++..+.+.|.+.+.+.+++  ++++++|++++.++ +.+++.+.++++ ...+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~~~~~a  155 (499)
T 2qa2_A           80 TQGHFGGRPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAE--LLRGHTVRALTDEG-DHVVVEVEGPDG-PRSLTT  155 (499)
T ss_dssp             SEEEETTEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCE--EEESCEEEEEEECS-SCEEEEEECSSC-EEEEEE
T ss_pred             ccceecceecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC-CEEEEEEEcCCC-cEEEEe
Confidence            00001000000000000000012234678899999999888998  99999999999876 678888887654 357999


Q ss_pred             CEEEEccCCCCCC
Q 024975          156 DAVVVCNGHFSVP  168 (259)
Q Consensus       156 d~VIlAtG~~s~~  168 (259)
                      |+||.|+|.+|..
T Consensus       156 ~~vVgADG~~S~V  168 (499)
T 2qa2_A          156 RYVVGCDGGRSTV  168 (499)
T ss_dssp             EEEEECCCTTCHH
T ss_pred             CEEEEccCcccHH
Confidence            9999999987753

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.58  E-value=3.5e-15  Score=122.75  Aligned_cols=151  Identities=17%  Similarity=0.119  Sum_probs=89.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-CCccc-cccccceecc--ccccc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-YPVHS-SLYKSLRVNL--PRELM   78 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~--~~~~~   78 (259)
                      +||+|||||++|+++|+.|+++|++|+|+|+.+.+....-.         ...+.. ..+.. ...+.+....  .....
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~---------~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~   76 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGE---------SLLPRCMEHLDEAGFLDAVKAQGFQQKFGA   76 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCC---------BCCGGGHHHHHHTTCHHHHHHTTCEEECEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccC---------cccHhHHHHHHHcCChHHHHHcCCcccCCc
Confidence            79999999999999999999999999999998643210000         000000 00000 0000000000  00000


Q ss_pred             ee------cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEE
Q 024975           79 GF------QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE  152 (259)
Q Consensus        79 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~  152 (259)
                      .+      ..+.+..... ..........+..+.+.|.+.+.+.|++  ++++++|+++...+ +.+.+.+...++....
T Consensus        77 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~L~~~a~~~gv~--i~~~~~v~~i~~~~-~~~~v~v~~~~g~~~~  152 (421)
T 3nix_A           77 KFVRGKEIADFNFSDQFS-NGWNWTWQVPRGNFDKTLADEAARQGVD--VEYEVGVTDIKFFG-TDSVTTIEDINGNKRE  152 (421)
T ss_dssp             EEEETTEEEEEETTSCSS-CSCCCEEECCHHHHHHHHHHHHHHHTCE--EECSEEEEEEEEET-TEEEEEEEETTSCEEE
T ss_pred             EEEeCCeeEEEeehhhcC-CCCCceeEECHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC-CEEEEEEEcCCCCEEE
Confidence            00      0011110000 0011112256688999999999888999  99999999999876 5666666655555557


Q ss_pred             EEeCEEEEccCCCC
Q 024975          153 ETFDAVVVCNGHFS  166 (259)
Q Consensus       153 ~~ad~VIlAtG~~s  166 (259)
                      +.+|.||+|+|.++
T Consensus       153 ~~a~~vV~A~G~~s  166 (421)
T 3nix_A          153 IEARFIIDASGYGR  166 (421)
T ss_dssp             EEEEEEEECCGGGC
T ss_pred             EEcCEEEECCCCch
Confidence            99999999999765

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.58  E-value=1.9e-15  Score=121.02  Aligned_cols=151  Identities=18%  Similarity=0.274  Sum_probs=86.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHH---cCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCc--ccc-------ccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLR---EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPV--HSS-------LYKSL   69 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~---~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~   69 (259)
                      |+||+|||||++|+++|+.|.+   .|++|+||||++.+||.+..................++  ...       .+..+
T Consensus         1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~   80 (342)
T 3qj4_A            1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDEL   80 (342)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHH
T ss_pred             CCcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHH
Confidence            5799999999999999999999   89999999999999987654321100000000000000  000       00000


Q ss_pred             eeccccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc
Q 024975           70 RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (259)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~  149 (259)
                      .....  ...   +...............|.....+..+...++++.+.+  ++++++|+++...+ +.|.|.+.++.  
T Consensus        81 ~~~g~--~~~---~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~--i~~~~~V~~i~~~~-~~~~v~~~~g~--  150 (342)
T 3qj4_A           81 LAYGV--LRP---LSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAE--VYFRHRVTQINLRD-DKWEVSKQTGS--  150 (342)
T ss_dssp             HHTTS--CEE---CCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCE--EESSCCEEEEEECS-SSEEEEESSSC--
T ss_pred             HhCCC--eec---CchhhcceeccCCccceecCCCHHHHHHHHHHhcCCE--EEeCCEEEEEEEcC-CEEEEEECCCC--
Confidence            00000  000   0000000000001111222233445555555556888  99999999999876 77999887764  


Q ss_pred             eEEEEeCEEEEccCC
Q 024975          150 VEEETFDAVVVCNGH  164 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~  164 (259)
                        .+.||.||+|+..
T Consensus       151 --~~~ad~vV~A~p~  163 (342)
T 3qj4_A          151 --PEQFDLIVLTMPV  163 (342)
T ss_dssp             --CEEESEEEECSCH
T ss_pred             --EEEcCEEEECCCH
Confidence              5799999999984

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.57  E-value=3.8e-14  Score=120.36  Aligned_cols=155  Identities=18%  Similarity=0.100  Sum_probs=89.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-CCcc-ccccccceeccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-YPVH-SSLYKSLRVNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~   79 (259)
                      .+||+||||||+|+++|+.|+++|++|+|||+.+.+.....-.        ...+.. ..+. ...++.+..........
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~--------~l~~~s~~~l~~lGl~~~l~~~~~~~~~~  120 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAG--------ALHIRTVETLDLRGLLDRFLEGTQVAKGL  120 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCC--------CBCHHHHHHHHTTTCHHHHTTSCCBCSBC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEE--------EECHHHHHHHHHcCChHHHHhcCcccCCc
Confidence            4799999999999999999999999999999986553110000        000000 0000 00000000000000000


Q ss_pred             -ecCC---CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEe
Q 024975           80 -FQAY---PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (259)
Q Consensus        80 -~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~a  155 (259)
                       +...   .+................+..+.+.|.+.+.+.+++  ++++++|++++..+ +.++|.+.+.++. ..+++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~--i~~~~~v~~l~~~~-~~v~v~~~~~~G~-~~~~a  196 (570)
T 3fmw_A          121 PFAGIFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAE--IPRGHEVTRLRQDA-EAVEVTVAGPSGP-YPVRA  196 (570)
T ss_dssp             CBTTBCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEE--CCBSCEEEECCBCS-SCEEEEEEETTEE-EEEEE
T ss_pred             eeCCcccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CeEEEEEEeCCCc-EEEEe
Confidence             0000   000000000011122356688999999999888988  99999999998876 6788888543321 47999


Q ss_pred             CEEEEccCCCCCC
Q 024975          156 DAVVVCNGHFSVP  168 (259)
Q Consensus       156 d~VIlAtG~~s~~  168 (259)
                      |+||.|+|.+|..
T Consensus       197 ~~vV~ADG~~S~v  209 (570)
T 3fmw_A          197 RYGVGCDGGRSTV  209 (570)
T ss_dssp             SEEEECSCSSCHH
T ss_pred             CEEEEcCCCCchH
Confidence            9999999987643

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.56  E-value=5.3e-14  Score=119.15  Aligned_cols=162  Identities=18%  Similarity=0.103  Sum_probs=92.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCC-----CCCCCCCCC--CCCccccccc-----cc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE-----SDPLGVDPN--RYPVHSSLYK-----SL   69 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~-----~~   69 (259)
                      .+||+||||||+|+++|+.|+++|++|+|+|+.+.++....-..-..     ...++....  ..........     ..
T Consensus         5 ~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~   84 (535)
T 3ihg_A            5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLA   84 (535)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEE
T ss_pred             cCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEE
Confidence            47999999999999999999999999999999876531100000000     000000000  0000000000     00


Q ss_pred             eeccccccceec-CCCCCc-cCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC----cEEEEE
Q 024975           70 RVNLPRELMGFQ-AYPFVA-RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN----KWKVKS  143 (259)
Q Consensus        70 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~----~~~v~~  143 (259)
                      ..........+. .++... .............++..+..+|.+.+.+.+++  ++++++|++++..+ +    .+++.+
T Consensus        85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~--i~~~~~v~~i~~~~-~~~~~~v~v~~  161 (535)
T 3ihg_A           85 ESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGA--IRFGTRLLSFRQHD-DDAGAGVTARL  161 (535)
T ss_dssp             SSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCE--EESSCEEEEEEEEC-GGGCSEEEEEE
T ss_pred             eccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEECC-CCccccEEEEE
Confidence            000000000000 000000 00000011123356788999999999888998  99999999999876 5    788888


Q ss_pred             EecCCceEEEEeCEEEEccCCCCC
Q 024975          144 RKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       144 ~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      .++++ ...+++|+||.|+|.+|.
T Consensus       162 ~~~~~-~~~i~a~~vV~AdG~~S~  184 (535)
T 3ihg_A          162 AGPDG-EYDLRAGYLVGADGNRSL  184 (535)
T ss_dssp             EETTE-EEEEEEEEEEECCCTTCH
T ss_pred             EcCCC-eEEEEeCEEEECCCCcch
Confidence            87643 457999999999998763

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.56  E-value=2e-14  Score=104.37  Aligned_cols=114  Identities=26%  Similarity=0.414  Sum_probs=82.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      |+||+|||||++|+.+|..|.+.|.+|+|+|+.+..-....                         .+        ..+.
T Consensus         1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~-------------------------~~--------~~~~   47 (180)
T 2ywl_A            1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVS-------------------------RV--------PNYP   47 (180)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCS-------------------------CC--------CCST
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCch-------------------------hh--------hccC
Confidence            58999999999999999999999999999999762210000                         00        0000


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .++             ......++.+++.+.+++.+++  ++.+ +|++++..+ +.+.+.++++     .+.+|.||+|
T Consensus        48 ~~~-------------~~~~~~~~~~~l~~~~~~~gv~--v~~~-~v~~i~~~~-~~~~v~~~~g-----~i~ad~vI~A  105 (180)
T 2ywl_A           48 GLL-------------DEPSGEELLRRLEAHARRYGAE--VRPG-VVKGVRDMG-GVFEVETEEG-----VEKAERLLLC  105 (180)
T ss_dssp             TCT-------------TCCCHHHHHHHHHHHHHHTTCE--EEEC-CCCEEEECS-SSEEEECSSC-----EEEEEEEEEC
T ss_pred             CCc-------------CCCCHHHHHHHHHHHHHHcCCE--EEeC-EEEEEEEcC-CEEEEEECCC-----EEEECEEEEC
Confidence            000             0123478889999999999998  8988 999998865 5677776543     6899999999


Q ss_pred             cCCCCCCccCC
Q 024975          162 NGHFSVPRLAQ  172 (259)
Q Consensus       162 tG~~s~~~~~~  172 (259)
                      +|.  .|.++.
T Consensus       106 ~G~--~~~~~~  114 (180)
T 2ywl_A          106 THK--DPTLPS  114 (180)
T ss_dssp             CTT--CCHHHH
T ss_pred             CCC--CCCccc
Confidence            994  454433

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.56  E-value=6.3e-15  Score=124.95  Aligned_cols=184  Identities=15%  Similarity=0.122  Sum_probs=102.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC-CcCceeeeCCCCCCCCCCCCCCCCCccc-cccccceecc------
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVHS-SLYKSLRVNL------   73 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------   73 (259)
                      .+||+|||||++|+++|..|++.|.+|+|+|++. .+|..            .|.+....... .....+....      
T Consensus        28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~------------~Cnps~ggia~~~lv~ei~algg~~~~~   95 (651)
T 3ces_A           28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQM------------SCNPAIGGIGKGHLVKEVDALGGLMAKA   95 (651)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC------------SSSSEEESTTHHHHHHHHHHTTCSHHHH
T ss_pred             cCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccc------------cccccccchhhHHHHHHHHHhccHHHHH
Confidence            4799999999999999999999999999999974 33310            11110000000 0000000000      


Q ss_pred             -ccccceecCCCCCccCCCCCCC-CCCCCCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCCCcEEEEEEecCCce
Q 024975           74 -PRELMGFQAYPFVARNYEGSVD-LRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV  150 (259)
Q Consensus        74 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~  150 (259)
                       ......+.....  . .....+ ......+..+...+.+.+.+ .+++  + ++++|+++...++..+.|.+.+|    
T Consensus        96 ~d~~gi~f~~l~~--~-kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~--I-~~~~V~~L~~e~g~V~GV~t~dG----  165 (651)
T 3ces_A           96 IDQAGIQFRILNA--S-KGPAVRATRAQADRVLYRQAVRTALENQPNLM--I-FQQAVEDLIVENDRVVGAVTQMG----  165 (651)
T ss_dssp             HHHHEEEEEEEST--T-SCGGGCEEEEEECHHHHHHHHHHHHHTCTTEE--E-EECCEEEEEESSSBEEEEEETTS----
T ss_pred             hhhcccchhhhhc--c-cCcccccchhhCCHHHHHHHHHHHHHhCCCCE--E-EEEEEEEEEecCCEEEEEEECCC----
Confidence             000000100000  0 000000 00112346788888888877 5887  6 67899999876534456776654    


Q ss_pred             EEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975          151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (259)
Q Consensus       151 ~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~  229 (259)
                      ..+.||.||+|||.+  +..+.++|...+                +..+   +| |.++.+++..|.+.|.+|+.+...
T Consensus       166 ~~I~Ad~VVLATGt~--s~~~~i~G~~~~----------------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~tg  222 (651)
T 3ces_A          166 LKFRAKAVVLTVGTF--LDGKIHIGLDNY----------------SGGR---AG-DPPSIPLSRRLRELPLRVGRLKTG  222 (651)
T ss_dssp             EEEEEEEEEECCSTT--TCCEEECC---------------------------------CCHHHHHHHTTTCCEEEECCE
T ss_pred             CEEECCEEEEcCCCC--ccCccccCcccC----------------CCCC---cc-chhhhHHHHHHHhcCCeEEEecCC
Confidence            379999999999954  444445555432                0122   56 788999999999999999988653

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.55  E-value=1.4e-14  Score=121.40  Aligned_cols=139  Identities=18%  Similarity=0.239  Sum_probs=88.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+||+|||||++|+++|..|++.|.+|+|+|+.+.+|+.....         .       .......+........  ..
T Consensus        92 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~---------~-------~~~~~~~l~~~g~~~~--~~  153 (497)
T 2bry_A           92 NTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLH---------L-------WPFTIHDLRALGAKKF--YG  153 (497)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEE---------C-------CHHHHHHHHTTTHHHH--CT
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCccc---------C-------ChhHHHHHHHcCCccc--cc
Confidence            5799999999999999999999999999999988775331110         0       0000000000000000  00


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeC--CCcEEEEEEec-CCceEEEEeCEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKWKVKSRKK-DDVVEEETFDAV  158 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~~v~~~~g-~~~~~~~~ad~V  158 (259)
                      .+.         ........+.++...|.+.+.+.+++  ++++++|+++...+  ++.|.|.+.+. +++...+.+|+|
T Consensus       154 ~~~---------~~~~~~~~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~V  222 (497)
T 2bry_A          154 RFC---------TGTLDHISIRQLQLLLLKVALLLGVE--IHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVL  222 (497)
T ss_dssp             TTT---------CTTCCEEEHHHHHHHHHHHHHHTTCE--EEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEE
T ss_pred             ccc---------ccccccCCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEE
Confidence            000         00011123478888999988888998  99999999998742  25688888532 221235899999


Q ss_pred             EEccCCCCCCc
Q 024975          159 VVCNGHFSVPR  169 (259)
Q Consensus       159 IlAtG~~s~~~  169 (259)
                      |+|+|..+.++
T Consensus       223 V~A~G~~S~~r  233 (497)
T 2bry_A          223 ISAAGGKFVPE  233 (497)
T ss_dssp             EECCCTTCCCT
T ss_pred             EECCCCCcccc
Confidence            99999766543

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.54  E-value=8.7e-14  Score=105.12  Aligned_cols=125  Identities=14%  Similarity=0.090  Sum_probs=82.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+||+|||||++|+.+|..|++.|.+|+|+|+.....| +...+..       ..   ......+..+.           
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G-~~~~~~~-------~~---~~~~~~~~~~~-----------   60 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVM-MPFLPPK-------PP---FPPGSLLERAY-----------   60 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT-CCSSCCC-------SC---CCTTCHHHHHC-----------
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCC-cccCccc-------cc---cchhhHHhhhc-----------
Confidence            58999999999999999999999999999999843333 2111100       00   00000000000           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                      +              ..-+.+..+..++.+.+.+. +++  ++ +++|+++...++..+.|.+.++.    .+.+|+||+
T Consensus        61 d--------------~~g~~~~~~~~~l~~~~~~~~gv~--i~-~~~v~~i~~~~~~v~~v~~~~g~----~i~a~~VV~  119 (232)
T 2cul_A           61 D--------------PKDERVWAFHARAKYLLEGLRPLH--LF-QATATGLLLEGNRVVGVRTWEGP----PARGEKVVL  119 (232)
T ss_dssp             C--------------TTCCCHHHHHHHHHHHHHTCTTEE--EE-ECCEEEEEEETTEEEEEEETTSC----CEECSEEEE
T ss_pred             c--------------CCCCCHHHHHHHHHHHHHcCCCcE--EE-EeEEEEEEEeCCEEEEEEECCCC----EEECCEEEE
Confidence            0              00014578889999998886 887  66 67999998876333567666543    699999999


Q ss_pred             ccCCCCCCc
Q 024975          161 CNGHFSVPR  169 (259)
Q Consensus       161 AtG~~s~~~  169 (259)
                      |+|.++..+
T Consensus       120 A~G~~s~~~  128 (232)
T 2cul_A          120 AVGSFLGAR  128 (232)
T ss_dssp             CCTTCSSCE
T ss_pred             CCCCChhhc
Confidence            999765444

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.53  E-value=1.9e-14  Score=120.91  Aligned_cols=156  Identities=19%  Similarity=0.230  Sum_probs=88.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC-------ceeeeCCCCC--CCCCCCCCCCCCccccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-------GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVN   72 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g-------g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   72 (259)
                      .+||+||||||+|+++|+.|++.|++|+|+|+.+.++       +.|.......  ....+......+.....+..+...
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            4799999999999999999999999999999987763       2232211000  000000000000000000000000


Q ss_pred             cc--cccc-eecCCCCCccCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec
Q 024975           73 LP--RELM-GFQAYPFVARNYEGSVDLRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK  146 (259)
Q Consensus        73 ~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g  146 (259)
                      ..  .... .+..+.......   .....+.   ....+...+.+.+.+.+++  ++++++|+++...++..+.|.+.++
T Consensus       187 ~~~~~~v~~~~~~~G~~~~i~---~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~--I~~~t~V~~I~~~~~~v~gV~l~~G  261 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEEIL---YVSKPHIGTFKLVTMIEKMRATIIELGGE--IRFSTRVDDLHMEDGQITGVTLSNG  261 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGGGG---TBSSCCCCHHHHHHHHHHHHHHHHHTTCE--EESSCCEEEEEESSSBEEEEEETTS
T ss_pred             cccHHHHHHHHHHcCCCceEe---eccccccccchHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEEeCCEEEEEEECCC
Confidence            00  0000 000000000000   0011111   1256778888888888999  9999999999987634466888765


Q ss_pred             CCceEEEEeCEEEEccCCCC
Q 024975          147 DDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       147 ~~~~~~~~ad~VIlAtG~~s  166 (259)
                      .    .+.+|.||+|+|+++
T Consensus       262 ~----~i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          262 E----EIKSRHVVLAVGHSA  277 (549)
T ss_dssp             C----EEECSCEEECCCTTC
T ss_pred             C----EEECCEEEECCCCCh
Confidence            4    799999999999866

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.53  E-value=1.6e-14  Score=118.31  Aligned_cols=157  Identities=16%  Similarity=0.134  Sum_probs=88.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCccccccccceeccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (259)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.+.+.   ......+...  ...++.... ..........+.......
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~-~~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDI-METFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHH-HHHHSCCCCEEEEEETTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHH-HHhhcCCCcceEEEECCC
Confidence            4899999999999999999999999999999987653   1111110000  000000000 000000000000000000


Q ss_pred             cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (259)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad  156 (259)
                      ...+..++..... ...........+..+.+.|.+.+.+  ++  ++++++|++++..+ +.+.|.+.++.    .+.+|
T Consensus       102 g~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~--~~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~a~  171 (407)
T 3rp8_A          102 GENMTQFSLAPLI-ERTGSRPCPVSRAELQREMLDYWGR--DS--VQFGKRVTRCEEDA-DGVTVWFTDGS----SASGD  171 (407)
T ss_dssp             CCEEEEEECHHHH-HHHSSCCEEEEHHHHHHHHHHHHCG--GG--EEESCCEEEEEEET-TEEEEEETTSC----EEEES
T ss_pred             CCEeEEecchhhh-hhcCCceEEEEHHHHHHHHHHhCCc--CE--EEECCEEEEEEecC-CcEEEEEcCCC----EEeeC
Confidence            0000000000000 0000112224567888888888865  66  99999999999886 67888887765    79999


Q ss_pred             EEEEccCCCCCCc
Q 024975          157 AVVVCNGHFSVPR  169 (259)
Q Consensus       157 ~VIlAtG~~s~~~  169 (259)
                      .||.|+|.+|..+
T Consensus       172 ~vV~AdG~~S~vr  184 (407)
T 3rp8_A          172 LLIAADGSHSALR  184 (407)
T ss_dssp             EEEECCCTTCSSH
T ss_pred             EEEECCCcChHHH
Confidence            9999999877644

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.51  E-value=1.5e-13  Score=115.76  Aligned_cols=152  Identities=17%  Similarity=0.187  Sum_probs=88.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC----ceeeeCCCCCCCCCCCCCCCCCccc-cccccceecc-c-c
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG----GSWIYTSETESDPLGVDPNRYPVHS-SLYKSLRVNL-P-R   75 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g----g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~   75 (259)
                      +||+|||||++|+++|+.|+++|++|+|+|+.+.+.    ..+.....           ...+.. ...+.+.... . .
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~-----------~~~l~~lgl~~~~~~~~~~~~   76 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATV-----------HGICAMLGLTDEMKRAGFPIK   76 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHH-----------TTHHHHTTCHHHHHTTTCCEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchH-----------HHHHHHhCcHHHHHHcCCccc
Confidence            799999999999999999999999999999986332    11100000           000000 0000000000 0 0


Q ss_pred             cc--ceecC------CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC
Q 024975           76 EL--MGFQA------YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD  147 (259)
Q Consensus        76 ~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~  147 (259)
                      ..  ..+..      +.+.... ...........+..+.+.|.+.+.+.|++  ++++++|+++...++....|.+...+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~--i~~~~~V~~v~~~~~~v~gv~~~~~d  153 (512)
T 3e1t_A           77 RGGTFRWGKEPEPWTFGFTRHP-DDPYGFAYQVERARFDDMLLRNSERKGVD--VRERHEVIDVLFEGERAVGVRYRNTE  153 (512)
T ss_dssp             CEEEEECSSCSSCEEEESSSSS-SSTTCCEEBCCHHHHHHHHHHHHHHTTCE--EESSCEEEEEEEETTEEEEEEEECSS
T ss_pred             cCceEEecCCccccccccccCC-CCCcceeeEecHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEECCEEEEEEEEeCC
Confidence            00  00000      0000000 00001112256788999999999888999  99999999999876332235665544


Q ss_pred             CceEEEEeCEEEEccCCCCCC
Q 024975          148 DVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       148 ~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      +....+.+|.||+|+|.+|..
T Consensus       154 G~~~~i~ad~VI~AdG~~S~v  174 (512)
T 3e1t_A          154 GVELMAHARFIVDASGNRTRV  174 (512)
T ss_dssp             SCEEEEEEEEEEECCCTTCSS
T ss_pred             CCEEEEEcCEEEECCCcchHH
Confidence            444579999999999986643

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.50  E-value=1.4e-13  Score=112.30  Aligned_cols=143  Identities=17%  Similarity=0.159  Sum_probs=84.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc----CceeeeCCCCC--CCCCCCCCCCCCccccccccceecccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPR   75 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~----gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (259)
                      ++||+|||||++|+++|..|+++|++|+|+|+.+.+    |+.+...+...  ...++....            ....+.
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~------------~~~~~~   72 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELD------------SISVPS   72 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGG------------GTCBCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccc------------cccccc
Confidence            479999999999999999999999999999998653    22221110000  000000000            000000


Q ss_pred             ccceecCC-CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEE
Q 024975           76 ELMGFQAY-PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET  154 (259)
Q Consensus        76 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~  154 (259)
                      ....+.+. .....  ........+..+..+.+.|.+.+  .+++  ++++++|+++...+ +.+.|.+.++.    .+.
T Consensus        73 ~~~~~~~~~~g~~~--~~~~~~~~~~~~~~l~~~L~~~~--~~~~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~  141 (397)
T 2vou_A           73 SSMEYVDALTGERV--GSVPADWRFTSYDSIYGGLYELF--GPER--YHTSKCLVGLSQDS-ETVQMRFSDGT----KAE  141 (397)
T ss_dssp             CEEEEEETTTCCEE--EEEECCCCEEEHHHHHHHHHHHH--CSTT--EETTCCEEEEEECS-SCEEEEETTSC----EEE
T ss_pred             cceEEEecCCCCcc--ccccCcccccCHHHHHHHHHHhC--CCcE--EEcCCEEEEEEecC-CEEEEEECCCC----EEE
Confidence            00000000 00000  00000111234466767776654  3777  99999999999876 67888887764    799


Q ss_pred             eCEEEEccCCCCC
Q 024975          155 FDAVVVCNGHFSV  167 (259)
Q Consensus       155 ad~VIlAtG~~s~  167 (259)
                      +|.||.|+|.+|.
T Consensus       142 ad~vV~AdG~~S~  154 (397)
T 2vou_A          142 ANWVIGADGGASV  154 (397)
T ss_dssp             ESEEEECCCTTCH
T ss_pred             CCEEEECCCcchh
Confidence            9999999998765

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.50  E-value=2.9e-16  Score=129.42  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=31.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQ   36 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~   36 (259)
                      |.++|||||||++|+++|.+|++.+  .+|+|+|+++.
T Consensus         1 M~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~   38 (430)
T 3hyw_A            1 MAKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY   38 (430)
T ss_dssp             -CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred             CCCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence            6789999999999999999999865  79999999763

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.49  E-value=2e-13  Score=106.29  Aligned_cols=141  Identities=15%  Similarity=0.013  Sum_probs=83.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc-CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~-g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      ++||+|||||++|+++|..|+++ |.+|+|+|+.+.+|+.+....        ..............++..         
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~--------~~~~~~~~~~~~~~~l~~---------  101 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGG--------QLFSAMIVRKPAHLFLDE---------  101 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCS--------TTCCCEEEETTTHHHHHH---------
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCC--------cchHHHHcCcHHHHHHHH---------
Confidence            46999999999999999999997 999999999988875432210        000000000000000000         


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCCCcEEEEEEe---------c-CCc
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRK---------K-DDV  149 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~---------g-~~~  149 (259)
                      ...++...     ..........++...+.+.+.+ .+++  ++++++|+++...++....+.+..         + .++
T Consensus       102 ~G~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~gv~--i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~  174 (284)
T 1rp0_A          102 IGVAYDEQ-----DTYVVVKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMD  174 (284)
T ss_dssp             HTCCCEEC-----SSEEEESCHHHHHHHHHHHHHTSTTEE--EEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCC
T ss_pred             cCCCcccC-----CCEEEecCHHHHHHHHHHHHHhcCCCE--EEcCcEEEEEEecCCeEEEEEEeccccccccCccccCc
Confidence            01111110     0000011346677777776655 5888  999999999987753333455542         1 122


Q ss_pred             eEEEEeCEEEEccCCCC
Q 024975          150 VEEETFDAVVVCNGHFS  166 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s  166 (259)
                      ...+.+|.||+|+|..+
T Consensus       175 ~~~i~ad~VV~AtG~~s  191 (284)
T 1rp0_A          175 PNVMEAKIVVSSCGHDG  191 (284)
T ss_dssp             CEEEEEEEEEECCCSSS
T ss_pred             eEEEECCEEEECCCCch
Confidence            35799999999999543

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.49  E-value=1.3e-13  Score=117.45  Aligned_cols=153  Identities=23%  Similarity=0.252  Sum_probs=89.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-CCccc-cccccceeccc--ccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-YPVHS-SLYKSLRVNLP--REL   77 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~--~~~   77 (259)
                      .+||+|||||++|+++|+.|++.|++|+|+|+.+.++.....         ...+.. ..+.. ...+.+.....  ...
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~---------~l~p~~~~~l~~lGl~~~l~~~~~~~~~~   93 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGE---------SLLPGTMSILNRLGLQEKIDAQNYVKKPS   93 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCC---------BCCHHHHHHHHHTTCHHHHHHHCCEEECE
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceee---------eECHHHHHHHHHcCCcHHHHhcCCcccCC
Confidence            379999999999999999999999999999998644321100         000000 00000 00000000000  000


Q ss_pred             ceec--------CCCCCccCCCC-CCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCC
Q 024975           78 MGFQ--------AYPFVARNYEG-SVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD  148 (259)
Q Consensus        78 ~~~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~  148 (259)
                      ..+.        .+.+....... .........+..+...|.+.+.+.|++  ++++++|+++...+++.+.|.+.+ ++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~--i~~g~~V~~v~~~~g~~~~V~~~~-~G  170 (591)
T 3i3l_A           94 ATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGIT--VHEETPVTDVDLSDPDRVVLTVRR-GG  170 (591)
T ss_dssp             EEEECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCE--EETTCCEEEEECCSTTCEEEEEEE-TT
T ss_pred             cEEEecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCEEEEEEec-CC
Confidence            0000        00000000000 000111245688999999999889999  999999999987654678888874 23


Q ss_pred             ceEEEEeCEEEEccCCCC
Q 024975          149 VVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       149 ~~~~~~ad~VIlAtG~~s  166 (259)
                      ....+.+|.||.|+|.+|
T Consensus       171 ~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          171 ESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             EEEEEEESEEEECCGGGC
T ss_pred             ceEEEEcCEEEECCCCcc
Confidence            335799999999999765

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.49  E-value=8.1e-14  Score=112.44  Aligned_cols=63  Identities=11%  Similarity=0.143  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975          102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ...+...+.+.+.+.|++  ++++++|+++...+++.|.|.+.++.  ...+.||.||+|+|.++..
T Consensus       149 ~~~~~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~g~--~~~~~a~~VV~A~G~~s~~  211 (369)
T 3dme_A          149 SHALMLAYQGDAESDGAQ--LVFHTPLIAGRVRPEGGFELDFGGAE--PMTLSCRVLINAAGLHAPG  211 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCE--EECSCCEEEEEECTTSSEEEEECTTS--CEEEEEEEEEECCGGGHHH
T ss_pred             HHHHHHHHHHHHHHCCCE--EECCCEEEEEEEcCCceEEEEECCCc--eeEEEeCEEEECCCcchHH
Confidence            367888888888899999  99999999999876445888776542  2479999999999987643

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.49  E-value=1.8e-13  Score=110.63  Aligned_cols=61  Identities=18%  Similarity=0.262  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCccC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA  171 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~~  171 (259)
                      ..+...+.+.+.+.|++  ++.+++|+++...+ +.|.|.+.++     .+.+|.||+|+|.++....+
T Consensus       149 ~~l~~~l~~~~~~~G~~--i~~~~~V~~i~~~~-~~~~v~~~~g-----~~~a~~vV~a~G~~s~~l~~  209 (372)
T 2uzz_A          149 ELAIKTWIQLAKEAGCA--QLFNCPVTAIRHDD-DGVTIETADG-----EYQAKKAIVCAGTWVKDLLP  209 (372)
T ss_dssp             HHHHHHHHHHHHHTTCE--EECSCCEEEEEECS-SSEEEEESSC-----EEEEEEEEECCGGGGGGTST
T ss_pred             HHHHHHHHHHHHHCCCE--EEcCCEEEEEEEcC-CEEEEEECCC-----eEEcCEEEEcCCccHHhhcc
Confidence            57888888888888998  99999999999876 5677766543     48999999999987754444

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.49  E-value=6.4e-14  Score=119.46  Aligned_cols=164  Identities=17%  Similarity=0.151  Sum_probs=92.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCC-------CCCCCCCC------------Ccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-------LGVDPNRY------------PVH   62 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~-------~~~~~~~~------------~~~   62 (259)
                      .+||+|||||++|+++|..|+++|.+|+|+||.+.+||............       .+......            ...
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND  205 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            37999999999999999999999999999999988876544322111000       00000000            000


Q ss_pred             ccccccceecccccccee--cCCCCCccCC-CCCCCCC-CC-----CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEE
Q 024975           63 SSLYKSLRVNLPRELMGF--QAYPFVARNY-EGSVDLR-RY-----PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL  133 (259)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~-~~-----~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~  133 (259)
                      ......+....+.....+  ...++..... ....... .+     .....+...|.+.+.+.+++  ++++++|++|..
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~--i~~~~~v~~l~~  283 (571)
T 1y0p_A          206 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNID--LRMNTRGIEVLK  283 (571)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCE--EESSEEEEEEEE
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCE--EEeCCEeeEeEE
Confidence            000000000000000000  0011110000 0000000 01     22367888899999889999  999999999998


Q ss_pred             eC-CCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          134 VE-SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       134 ~~-~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ++ +..+.|.+.+.+++...+.+|.||+|||.++.
T Consensus       284 ~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~  318 (571)
T 1y0p_A          284 DDKGTVKGILVKGMYKGYYWVKADAVILATGGFAK  318 (571)
T ss_dssp             CTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             cCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCccc
Confidence            65 34444666653444457899999999998664

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.49  E-value=1.1e-13  Score=112.88  Aligned_cols=157  Identities=18%  Similarity=0.228  Sum_probs=88.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc------CceeeeCCCCC--CCCCCCCCCCCCcc-cccccccee
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV------GGSWIYTSETE--SDPLGVDPNRYPVH-SSLYKSLRV   71 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~------gg~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~   71 (259)
                      |.+||+|||||++|+++|..|++.|++|+|+|+.+.+      ++.. ..+...  ...++....  +.. ......+..
T Consensus         1 m~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~-l~~~~~~~l~~lg~~~~--~~~~~~~~~~~~~   77 (394)
T 1k0i_A            1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGV-LEQGMVDLLREAGVDRR--MARDGLVHEGVEI   77 (394)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCE-ECHHHHHHHHHTTCCHH--HHHHCEEESCEEE
T ss_pred             CCccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEe-ECHHHHHHHHHcCCcHH--HHhcCCccceEEE
Confidence            6789999999999999999999999999999997642      1111 000000  000000000  000 000000000


Q ss_pred             ccccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceE
Q 024975           72 NLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE  151 (259)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~  151 (259)
                      .......   ...+...   ..........+..+.+.|.+.+.+.+++  ++++++|+++...+++.+.|.+.. ++...
T Consensus        78 ~~~~~~~---~~~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~g~~--i~~~~~v~~i~~~~~~~~~v~~~~-~g~~~  148 (394)
T 1k0i_A           78 AFAGQRR---RIDLKRL---SGGKTVTVYGQTEVTRDLMEAREACGAT--TVYQAAEVRLHDLQGERPYVTFER-DGERL  148 (394)
T ss_dssp             EETTEEE---EECHHHH---HTSCCEEECCHHHHHHHHHHHHHHTTCE--EESSCEEEEEECTTSSSCEEEEEE-TTEEE
T ss_pred             EECCceE---Eeccccc---cCCCceEEechHHHHHHHHHHHHhcCCe--EEeceeEEEEEEecCCceEEEEec-CCcEE
Confidence            0000000   0000000   0000111224567778888888778888  999999999987643567887732 23334


Q ss_pred             EEEeCEEEEccCCCCCCc
Q 024975          152 EETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       152 ~~~ad~VIlAtG~~s~~~  169 (259)
                      .+.+|.||.|+|.+|..+
T Consensus       149 ~~~a~~vV~AdG~~S~vr  166 (394)
T 1k0i_A          149 RLDCDYIAGCDGFHGISR  166 (394)
T ss_dssp             EEECSEEEECCCTTCSTG
T ss_pred             EEEeCEEEECCCCCcHHH
Confidence            699999999999877654

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.48  E-value=1.4e-13  Score=112.41  Aligned_cols=115  Identities=19%  Similarity=0.195  Sum_probs=73.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      .++|+|||||++|+++|.+|++.+  .+|+|||+++......                       ....+..    ..  
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p-----------------------~~~~v~~----g~--   52 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCY-----------------------MSNEVIG----GD--   52 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECST-----------------------THHHHHH----TS--
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCcc-----------------------CHHHHhc----CC--
Confidence            478999999999999999999875  5899999976321000                       0000000    00  


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                         .+.                 +++..-+.+ +.+.+++  ++ ..+|++++...   -.+.+.++.    .+.||++|
T Consensus        53 ---~~~-----------------~~~~~~~~~-~~~~gv~--~i-~~~v~~id~~~---~~v~~~~g~----~i~yd~Lv  101 (401)
T 3vrd_B           53 ---REL-----------------ASLRVGYDG-LRAHGIQ--VV-HDSALGIDPDK---KLVKTAGGA----EFAYDRCV  101 (401)
T ss_dssp             ---SCG-----------------GGGEECSHH-HHHTTCE--EE-CSCEEEEETTT---TEEEETTSC----EEECSEEE
T ss_pred             ---CCH-----------------HHHhhCHHH-HHHCCCE--EE-EeEEEEEEccC---cEEEecccc----eeecceee
Confidence               000                 000000111 2345777  54 55888887543   356666655    79999999


Q ss_pred             EccCCCCCCccCCCCCCCC
Q 024975          160 VCNGHFSVPRLAQVPGIDS  178 (259)
Q Consensus       160 lAtG~~s~~~~~~~~g~~~  178 (259)
                      +|||  +.+..+.++|...
T Consensus       102 iAtG--~~~~~~~i~G~~e  118 (401)
T 3vrd_B          102 VAPG--IDLLYDKIEGYSE  118 (401)
T ss_dssp             ECCC--EEECGGGSBTCCS
T ss_pred             eccC--CccccCCccCchh
Confidence            9999  7888888888765

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.48  E-value=5.6e-13  Score=113.67  Aligned_cols=156  Identities=17%  Similarity=0.187  Sum_probs=89.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc------CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC--CCcccc--cccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSS--LYKSLRV   71 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~------g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~   71 (259)
                      .+||+||||||+|+++|..|++.      |++|+|+||.+.+|+......       ...+..  .++...  ....+..
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~-------~l~~~~l~~ll~~~~~~g~~~~~  107 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGA-------CLDPRAFEELFPDWKEKGAPLNT  107 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCC-------EECTHHHHHHCTTHHHHTCCCCE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCcccccc-------ccCHHHHHHHHHHHHhcCCceee
Confidence            47999999999999999999999      999999999987764321100       000000  000000  0000000


Q ss_pred             ccccccceec------CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcE-EEEEE
Q 024975           72 NLPRELMGFQ------AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSR  144 (259)
Q Consensus        72 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~  144 (259)
                      ........+.      .++..... ...........+..+.+.|.+.+.+.|++  ++++++|+++..++++.+ .|.+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~--i~~g~~v~~l~~~~~g~V~gV~~~  184 (584)
T 2gmh_A          108 PVTEDRFGILTEKYRIPVPILPGL-PMNNHGNYVVRLGHLVSWMGEQAEALGVE--VYPGYAAAEILFHEDGSVKGIATN  184 (584)
T ss_dssp             ECCEEEEEEECSSCEEECCCCTTS-TTCCTTCEECCHHHHHHHHHHHHHHTTCE--EETTCCEEEEEECTTSSEEEEEEC
T ss_pred             eechhheeeeccCCCccccccCcc-ccccCCCEEEeHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCCCEEEEEeC
Confidence            0000000000      01100000 00001122246688999999999888999  999999999988753333 36665


Q ss_pred             e----cCCce-------EEEEeCEEEEccCCCCC
Q 024975          145 K----KDDVV-------EEETFDAVVVCNGHFSV  167 (259)
Q Consensus       145 ~----g~~~~-------~~~~ad~VIlAtG~~s~  167 (259)
                      +    .+++.       ..+.+|+||+|+|.+|.
T Consensus       185 ~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          185 DVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             CEEECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred             CccccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence            3    12211       37999999999998764

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.48  E-value=1.6e-13  Score=113.88  Aligned_cols=153  Identities=14%  Similarity=0.035  Sum_probs=88.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCC-C---CCCCCCCCCCCCccccccccceecccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSET-E---SDPLGVDPNRYPVHSSLYKSLRVNLPREL   77 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (259)
                      .+||+||||||+|+++|..|+++|++|+|+|+.+.+.......... .   ...++...............+....+...
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~   85 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQ   85 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCc
Confidence            3799999999999999999999999999999987542110000000 0   00000000000000000000000000000


Q ss_pred             ceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEE-EEEEec-CCceEEEEe
Q 024975           78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKK-DDVVEEETF  155 (259)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~-v~~~~g-~~~~~~~~a  155 (259)
                      ..   +++        ........+..+.+.|.+.+.+.|++  ++++++|+++...+ +.+. |.+.+. +++...+.+
T Consensus        86 ~~---~~~--------~~~~~~i~r~~l~~~L~~~a~~~gv~--i~~~~~v~~i~~~~-~~v~gv~~~~~~~G~~~~~~a  151 (453)
T 3atr_A           86 TV---WTV--------NGEGFELNAPLYNQRVLKEAQDRGVE--IWDLTTAMKPIFED-GYVKGAVLFNRRTNEELTVYS  151 (453)
T ss_dssp             CE---EEE--------EEEEEEECHHHHHHHHHHHHHHTTCE--EESSEEEEEEEEET-TEEEEEEEEETTTTEEEEEEC
T ss_pred             eE---EeE--------CCCcEEEcHHHHHHHHHHHHHHcCCE--EEeCcEEEEEEEEC-CEEEEEEEEEcCCCceEEEEc
Confidence            00   000        00011235678999999998888999  99999999998875 4443 666543 344457999


Q ss_pred             CEEEEccCCCCCC
Q 024975          156 DAVVVCNGHFSVP  168 (259)
Q Consensus       156 d~VIlAtG~~s~~  168 (259)
                      |.||+|+|.+|..
T Consensus       152 d~VV~AdG~~s~v  164 (453)
T 3atr_A          152 KVVVEATGYSRSF  164 (453)
T ss_dssp             SEEEECCGGGCTT
T ss_pred             CEEEECcCCchhh
Confidence            9999999986653

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.48  E-value=2.1e-13  Score=118.45  Aligned_cols=58  Identities=21%  Similarity=0.353  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ..+...+.+.+.+.|++  ++++++|+++...+ +.|.|.+.++.    .+.+|.||+|+|.++.
T Consensus       417 ~~l~~aL~~~a~~~Gv~--i~~~t~V~~l~~~~-~~v~V~t~~G~----~i~Ad~VVlAtG~~s~  474 (676)
T 3ps9_A          417 AELTRNVLELAQQQGLQ--IYYQYQLQNFSRKD-DCWLLNFAGDQ----QATHSVVVLANGHQIS  474 (676)
T ss_dssp             HHHHHHHHHHHHHTTCE--EEESCCEEEEEEET-TEEEEEETTSC----EEEESEEEECCGGGGG
T ss_pred             HHHHHHHHHHHHhCCCE--EEeCCeeeEEEEeC-CeEEEEECCCC----EEECCEEEECCCcchh
Confidence            67888888888888999  99999999999886 66888776654    6999999999998754

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.48  E-value=4.1e-13  Score=109.66  Aligned_cols=153  Identities=16%  Similarity=0.106  Sum_probs=87.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCccccccccceecccccc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPREL   77 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (259)
                      +||+|||||++|+++|..|+++|++|+|+|+.+.+.   ......+...  ....+.... ..........+..... ..
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~-~~~~~~~~~~~~~~~~-~g   84 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAE-VTRRGGRVRHELEVYH-DG   84 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHH-HHHTTCEEECEEEEEE-TT
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHH-HHHhCCCcceeEEEeC-CC
Confidence            699999999999999999999999999999986541   1111000000  000000000 0000000000000000 00


Q ss_pred             ceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcE--EEEEEecCCceEEEE
Q 024975           78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKW--KVKSRKKDDVVEEET  154 (259)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~--~v~~~~g~~~~~~~~  154 (259)
                      .....++....   ..........+..+.+.|.+.+.+. +++  ++++++|++++..+ +.+  .|.+.+|.    .+.
T Consensus        85 ~~~~~~~~~~~---~~~~~~~~~~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~-~~v~g~v~~~~g~----~~~  154 (399)
T 2x3n_A           85 ELLRYFNYSSV---DARGYFILMPCESLRRLVLEKIDGEATVE--MLFETRIEAVQRDE-RHAIDQVRLNDGR----VLR  154 (399)
T ss_dssp             EEEEEEETTSS---CGGGCEEECCHHHHHHHHHHHHTTCTTEE--EECSCCEEEEEECT-TSCEEEEEETTSC----EEE
T ss_pred             CEEEecchHHh---cccCccccccHHHHHHHHHHHhhhcCCcE--EEcCCEEEEEEEcC-CceEEEEEECCCC----EEE
Confidence            00000110000   0000112246688999999988877 888  99999999999876 567  78876654    799


Q ss_pred             eCEEEEccCCCCC
Q 024975          155 FDAVVVCNGHFSV  167 (259)
Q Consensus       155 ad~VIlAtG~~s~  167 (259)
                      +|.||+|+|.+|.
T Consensus       155 ad~vV~AdG~~s~  167 (399)
T 2x3n_A          155 PRVVVGADGIASY  167 (399)
T ss_dssp             EEEEEECCCTTCH
T ss_pred             CCEEEECCCCChH
Confidence            9999999998764

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.47  E-value=1.1e-13  Score=117.75  Aligned_cols=164  Identities=19%  Similarity=0.203  Sum_probs=92.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCC-------CCCCCCC------------Ccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL-------GVDPNRY------------PVH   62 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~-------~~~~~~~------------~~~   62 (259)
                      .+||+|||+|++|+++|..|+++|.+|+|+||.+.+||.............       +......            ...
T Consensus       121 ~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~  200 (566)
T 1qo8_A          121 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQND  200 (566)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            369999999999999999999999999999999888765433211110000       0000000            000


Q ss_pred             ccccccceecccccccee--cCCCCCccCC-CCCCCCC------CCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEE
Q 024975           63 SSLYKSLRVNLPRELMGF--QAYPFVARNY-EGSVDLR------RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL  133 (259)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~  133 (259)
                      ......+....+.....+  ...++..... .......      .......+...|.+.+.+.+++  ++++++|+++..
T Consensus       201 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~--i~~~~~v~~l~~  278 (566)
T 1qo8_A          201 IKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGID--TRLNSRVVKLVV  278 (566)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCC--EECSEEEEEEEE
T ss_pred             HHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEE
Confidence            000000000000000000  0011100000 0000000      0122467888999999889999  999999999988


Q ss_pred             eC-CCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          134 VE-SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       134 ~~-~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ++ +..+.|.+.+.+++...+.+|.||+|||.++.
T Consensus       279 ~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          279 NDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             CTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             CCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence            75 34445666643444457899999999998765

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.47  E-value=7.5e-14  Score=113.99  Aligned_cols=146  Identities=21%  Similarity=0.235  Sum_probs=85.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC-----ceeeeCCCCCCCCCCCCCCCCCccc-cccccceecc-c
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-----GSWIYTSETESDPLGVDPNRYPVHS-SLYKSLRVNL-P   74 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g-----g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~   74 (259)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+.++     +.+...+...         ...+.. ..++.+.... +
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~---------~~~l~~~gl~~~~~~~~~~   96 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSG---------QEAMKKAGLLQTYYDLALP   96 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTH---------HHHHHHTTCHHHHHHHCBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccH---------HHHHHhcChHHHHHHhhcc
Confidence            3699999999999999999999999999999986543     2222111000         000000 0000000000 0


Q ss_pred             -------cccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC
Q 024975           75 -------RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD  147 (259)
Q Consensus        75 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~  147 (259)
                             .....+....+...    .........+..+.++|.+.+.  +.+  ++++++|++++..+ +.|.|.+.++.
T Consensus        97 ~~~~~~~~~g~~~~~~~~~~~----~~~~~~~i~r~~l~~~L~~~~~--~~~--i~~~~~v~~i~~~~-~~v~v~~~~g~  167 (398)
T 2xdo_A           97 MGVNIADEKGNILSTKNVKPE----NRFDNPEINRNDLRAILLNSLE--NDT--VIWDRKLVMLEPGK-KKWTLTFENKP  167 (398)
T ss_dssp             CCEEEECSSSEEEEECCCGGG----TTSSCCEECHHHHHHHHHHTSC--TTS--EEESCCEEEEEECS-SSEEEEETTSC
T ss_pred             cceEEECCCCCchhhcccccc----CCCCCceECHHHHHHHHHhhcC--CCE--EEECCEEEEEEECC-CEEEEEECCCc
Confidence                   00000000000000    0011122456777777776653  255  89999999999876 67888887764


Q ss_pred             CceEEEEeCEEEEccCCCCCCc
Q 024975          148 DVVEEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       148 ~~~~~~~ad~VIlAtG~~s~~~  169 (259)
                          .+.+|.||.|+|.+|..+
T Consensus       168 ----~~~ad~vV~AdG~~S~vR  185 (398)
T 2xdo_A          168 ----SETADLVILANGGMSKVR  185 (398)
T ss_dssp             ----CEEESEEEECSCTTCSCC
T ss_pred             ----EEecCEEEECCCcchhHH
Confidence                689999999999877544

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.45  E-value=4.2e-14  Score=119.51  Aligned_cols=185  Identities=15%  Similarity=0.122  Sum_probs=107.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC-CcCceeeeCCCCCCCCCCCCCCCCCcc-ccccccceecc------
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVH-SSLYKSLRVNL------   73 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------   73 (259)
                      .+||+|||||++|++||..|++.|.+|+|+|++. .+|..            .|.+...... ......+....      
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~------------~Cnps~GGia~g~lv~eldalgg~~~~~   94 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQM------------SCNPAIGGIAKGIVVREIDALGGEMGKA   94 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC------------CSCSEEECTTHHHHHHHHHHHTCSHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCc------------CccccccccchHHHHHHHHHhhhHHHHH
Confidence            3799999999999999999999999999999974 34321            1111000000 00000000000      


Q ss_pred             -ccccceecCCCCCccCCCCCCC-CCCCCCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCCCcEEEEEEecCCce
Q 024975           74 -PRELMGFQAYPFVARNYEGSVD-LRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV  150 (259)
Q Consensus        74 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~  150 (259)
                       ......+.....  . .....+ ......+..+...+.+.+.+ .+++  + ++++|+++...++..+.|.+.+|.   
T Consensus        95 ~d~~gi~f~~l~~--~-kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVe--I-~~~~Vt~L~~e~g~V~GV~t~dG~---  165 (637)
T 2zxi_A           95 IDQTGIQFKMLNT--R-KGKAVQSPRAQADKKRYREYMKKVCENQENLY--I-KQEEVVDIIVKNNQVVGVRTNLGV---  165 (637)
T ss_dssp             HHHHEEEEEEEST--T-SCGGGCEEEEEECHHHHHHHHHHHHHTCTTEE--E-EESCEEEEEESSSBEEEEEETTSC---
T ss_pred             hhhcccceeeccc--c-cCccccchhhhCCHHHHHHHHHHHHHhCCCCE--E-EEeEEEEEEecCCEEEEEEECCCc---
Confidence             000000100000  0 000000 00012346788888888877 4887  6 678999998765344557776654   


Q ss_pred             EEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       151 ~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                       .+.||.||+|||.  .+..+.++|...+      .          ..+   + |+.++.+++..|.+.|.++..+.+..
T Consensus       166 -~i~AdaVVLATG~--~s~~~~~~G~~~~------~----------~Gr---~-G~~~A~~la~~L~~lG~~v~~l~tgt  222 (637)
T 2zxi_A          166 -EYKTKAVVVTTGT--FLNGVIYIGDKMI------P----------GGR---L-GEPRSEGLSDFYRRFDFPLIRFKTGT  222 (637)
T ss_dssp             -EEECSEEEECCTT--CBTCEEEETTEEE------E----------CSB---T-TBCCBCTHHHHHHHTTCCCEEEEEEE
T ss_pred             -EEEeCEEEEccCC--CccCceeccceec------C----------CCC---C-CchhHHHHHHHHHhcCCceEEecCCc
Confidence             7999999999995  4444445554321      0          111   2 35788999999999998887776643

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.44  E-value=1e-12  Score=106.56  Aligned_cols=146  Identities=21%  Similarity=0.164  Sum_probs=86.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCc---eeeeCCCCC--CCCCCCCCCCCCccccccccceeccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (259)
                      .+||+|||||++|+++|..|.+.|++|+|+|+.+.++.   .....+...  ...++.... ..........+.....  
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~-~~~~~~~~~~~~~~~~--   87 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDD-VLQGSHTPPTYETWMH--   87 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHH-HHTTCBCCSCEEEEET--
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHH-HHhhCCCccceEEEeC--
Confidence            37999999999999999999999999999999876642   111100000  000000000 0000000000000000  


Q ss_pred             cceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeC
Q 024975           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (259)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad  156 (259)
                      ...+..++..       ........+..+.++|.+.+.+.+++  ++++++|++++. + +  .|.+.++.    .+.+|
T Consensus        88 g~~~~~~~~~-------~~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~-~-~--~v~~~~g~----~~~ad  150 (379)
T 3alj_A           88 NKSVSKETFN-------GLPWRIMTRSHLHDALVNRARALGVD--ISVNSEAVAADP-V-G--RLTLQTGE----VLEAD  150 (379)
T ss_dssp             TEEEEEECGG-------GCCEEEEEHHHHHHHHHHHHHHTTCE--EESSCCEEEEET-T-T--EEEETTSC----EEECS
T ss_pred             CceeeeccCC-------CCceEEECHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEe-C-C--EEEECCCC----EEEcC
Confidence            0000000000       01122345688999999999888998  999999999986 3 4  77776654    79999


Q ss_pred             EEEEccCCCCC
Q 024975          157 AVVVCNGHFSV  167 (259)
Q Consensus       157 ~VIlAtG~~s~  167 (259)
                      .||+|+|.+|.
T Consensus       151 ~vV~AdG~~s~  161 (379)
T 3alj_A          151 LIVGADGVGSK  161 (379)
T ss_dssp             EEEECCCTTCH
T ss_pred             EEEECCCccHH
Confidence            99999997664

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.43  E-value=5e-13  Score=110.45  Aligned_cols=61  Identities=18%  Similarity=0.140  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHhCCceeEEece---eEEEEEEeCCCcEE-EEEEecCCceEEEEeCEEEEccCCCCCCcc
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHT---EVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSVPRL  170 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~---~v~~i~~~~~~~~~-v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~  170 (259)
                      ..+...|.+.+.+.|++  +++++   +|++|...+ +.+. |.+.++.    .+.||.||+|+|.++....
T Consensus       161 ~~~~~~L~~~a~~~Gv~--i~~~t~~~~V~~i~~~~-~~v~gV~t~~G~----~i~Ad~VV~AtG~~s~~l~  225 (438)
T 3dje_A          161 RNALVAAAREAQRMGVK--FVTGTPQGRVVTLIFEN-NDVKGAVTADGK----IWRAERTFLCAGASAGQFL  225 (438)
T ss_dssp             HHHHHHHHHHHHHTTCE--EEESTTTTCEEEEEEET-TEEEEEEETTTE----EEECSEEEECCGGGGGGTS
T ss_pred             HHHHHHHHHHHHhcCCE--EEeCCcCceEEEEEecC-CeEEEEEECCCC----EEECCEEEECCCCChhhhc
Confidence            67888888989889999  99999   999999876 5666 7777653    7999999999998765443

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.43  E-value=9.2e-13  Score=110.82  Aligned_cols=60  Identities=15%  Similarity=0.163  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHhCCceeEEeceeEEEEEEe-CCCcEEEEEEecCCceEEEEeC-EEEEccCCCC
Q 024975          104 EVLRYLQNFAREFGVDQVVRLHTEVLNARLV-ESNKWKVKSRKKDDVVEEETFD-AVVVCNGHFS  166 (259)
Q Consensus       104 ~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~-~~~~~~v~~~~g~~~~~~~~ad-~VIlAtG~~s  166 (259)
                      .+...|.+.+++.+++  ++++++|++|..+ ++....|.+.++ ++...+.|+ .||+|||.++
T Consensus       203 ~l~~~L~~~~~~~Gv~--i~~~t~v~~L~~~~~g~v~GV~~~~~-g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVR--AEYDMRVQTLVTDDTGRVVGIVAKQY-GKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCE--EECSEEEEEEEECTTCCEEEEEEEET-TEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCE--EEecCEeEEEEECCCCcEEEEEEEEC-CcEEEEEeCCeEEEeCCChh
Confidence            7888899988888999  9999999999987 334445666653 344578995 9999999876

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.42  E-value=1.9e-12  Score=109.97  Aligned_cols=63  Identities=13%  Similarity=0.006  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEccCCCC
Q 024975          102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s  166 (259)
                      ...+...+...+.+.|++  ++.+++|+++...+++.+.|.+.+. +++...+.||.||+|+|.|+
T Consensus       169 ~~~l~~~L~~~a~~~G~~--i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          169 DARLTLEIMKEAVARGAV--ALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HHHHHHHHHHHHHHTTCE--EEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            367778888888889999  9999999999987644467887763 24446799999999999876

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.41  E-value=7.1e-13  Score=107.55  Aligned_cols=59  Identities=22%  Similarity=0.178  Sum_probs=47.8

Q ss_pred             CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ....+...+.+.+.+.|++  ++.+++|+++...+ +.|.|.+.++     .+.+|.||+|+|.++.
T Consensus       162 ~~~~~~~~l~~~~~~~g~~--i~~~~~v~~i~~~~-~~~~v~~~~g-----~~~a~~vV~A~G~~s~  220 (382)
T 1ryi_A          162 EPYFVCKAYVKAAKMLGAE--IFEHTPVLHVERDG-EALFIKTPSG-----DVWANHVVVASGVWSG  220 (382)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EETTCCCCEEECSS-SSEEEEETTE-----EEEEEEEEECCGGGTH
T ss_pred             cHHHHHHHHHHHHHHCCCE--EEcCCcEEEEEEEC-CEEEEEcCCc-----eEEcCEEEECCChhHH
Confidence            3477888899988888998  99999999998765 6676665432     6899999999998654

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.41  E-value=4e-12  Score=107.80  Aligned_cols=160  Identities=11%  Similarity=0.035  Sum_probs=86.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee---eCCCCC--CCCCCCCCC--CCCccccccccceecccc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI---YTSETE--SDPLGVDPN--RYPVHSSLYKSLRVNLPR   75 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~---~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~   75 (259)
                      +||+||||||+|+++|..|+++|++|+|+|+.+.++....   ..+...  ....+....  ..................
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~  106 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV  106 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence            6999999999999999999999999999999876532110   000000  000000000  000000000000000000


Q ss_pred             ccceecCCCCCccCC--C--CCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCce
Q 024975           76 ELMGFQAYPFVARNY--E--GSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVV  150 (259)
Q Consensus        76 ~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~  150 (259)
                      ....+..+++.....  .  .........++..+.++|.+.+.+.     ++++++|++++.++ +.+++.+.+. +++.
T Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-----v~~~~~v~~~~~~~-~~v~v~~~~~~~G~~  180 (549)
T 2r0c_A          107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER-----LRTRSRLDSFEQRD-DHVRATITDLRTGAT  180 (549)
T ss_dssp             TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG-----EECSEEEEEEEECS-SCEEEEEEETTTCCE
T ss_pred             CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh-----cccCcEEEEEEEeC-CEEEEEEEECCCCCE
Confidence            000000011100000  0  0001112245677888888887664     78899999999876 6788888762 2434


Q ss_pred             EEEEeCEEEEccCCCCCC
Q 024975          151 EEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       151 ~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+++|+||.|+|.+|..
T Consensus       181 ~~i~a~~vVgADG~~S~v  198 (549)
T 2r0c_A          181 RAVHARYLVACDGASSPT  198 (549)
T ss_dssp             EEEEEEEEEECCCTTCHH
T ss_pred             EEEEeCEEEECCCCCcHH
Confidence            579999999999987753

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.41  E-value=6.6e-13  Score=108.79  Aligned_cols=159  Identities=18%  Similarity=0.132  Sum_probs=88.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCc-EEEEeeCCCcCc---eeeeCCCCC--CCCCCCCCCCCCcc-ccccccceeccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPVH-SSLYKSLRVNLP   74 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~-v~v~e~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~   74 (259)
                      .+||+|||||++|+++|..|++.|++ |+|+|+.+.++.   .....+...  ...++....  +.. ......+.....
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~--l~~~~~~~~~~~~~~~   81 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA--LAATAIPTHELRYIDQ   81 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHH--HHHHSEEECEEEEECT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHH--HHhhCCCcceEEEEcC
Confidence            37999999999999999999999999 999999876531   111110000  000000000  000 000000000000


Q ss_pred             cccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hC-CceeEEeceeEEEEEEeCCCcEEEEEEec-CCceE
Q 024975           75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FG-VDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVE  151 (259)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~  151 (259)
                      . ...+...+....  ...........+..+.++|.+.+.+ .+ ++  ++++++|+++.. + +.+.+.+.+. ++...
T Consensus        82 ~-g~~~~~~~~~~~--~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~--v~~~~~v~~i~~-~-~~v~v~~~~~~~g~~~  154 (410)
T 3c96_A           82 S-GATVWSEPRGVE--AGNAYPQYSIHRGELQMILLAAVRERLGQQA--VRTGLGVERIEE-R-DGRVLIGARDGHGKPQ  154 (410)
T ss_dssp             T-SCEEEEEECGGG--GTCSSCEEEEEHHHHHHHHHHHHHHHHCTTS--EEESEEEEEEEE-E-TTEEEEEEEETTSCEE
T ss_pred             C-CCEEeeccCCcc--ccCCCCeeeeeHHHHHHHHHHHHHhhCCCcE--EEECCEEEEEec-C-CccEEEEecCCCCCce
Confidence            0 000000000000  0000111224567888899888876 36 47  999999999988 5 6688887761 12234


Q ss_pred             EEEeCEEEEccCCCCCCc
Q 024975          152 EETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       152 ~~~ad~VIlAtG~~s~~~  169 (259)
                      .+.+|.||.|+|.+|..+
T Consensus       155 ~~~ad~vV~AdG~~S~vR  172 (410)
T 3c96_A          155 ALGADVLVGADGIHSAVR  172 (410)
T ss_dssp             EEEESEEEECCCTTCHHH
T ss_pred             EEecCEEEECCCccchhH
Confidence            789999999999877544

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.41  E-value=1.4e-13  Score=111.99  Aligned_cols=57  Identities=23%  Similarity=0.334  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ..+...+.+.+.+.|++  ++.+++|+++...+ +.|.|.+.+     ..+.+|.||+|+|.++.
T Consensus       150 ~~~~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~-~~~~v~~~~-----g~~~a~~vV~A~G~~~~  206 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAK--VLTHTRVEDFDISP-DSVKIETAN-----GSYTADKLIVSMGAWNS  206 (389)
T ss_dssp             HHHHHHHHHHHHHTTCE--EECSCCEEEEEECS-SCEEEEETT-----EEEEEEEEEECCGGGHH
T ss_pred             HHHHHHHHHHHHHCCCE--EEcCcEEEEEEecC-CeEEEEeCC-----CEEEeCEEEEecCccHH
Confidence            67888888888888998  99999999999876 567776643     26899999999998654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.41  E-value=1.4e-12  Score=113.56  Aligned_cols=59  Identities=14%  Similarity=0.344  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ..+...+.+.+.+.|++  ++++++|+++...+ +.|.|.+.++.   ..+.+|.||+|+|.++.
T Consensus       412 ~~l~~aL~~~a~~~Gv~--i~~~t~V~~l~~~~-~~v~V~t~~G~---~~i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          412 SDLTHALMMLAQQNGMT--CHYQHELQRLKRID-SQWQLTFGQSQ---AAKHHATVILATGHRLP  470 (689)
T ss_dssp             HHHHHHHHHHHHHTTCE--EEESCCEEEEEECS-SSEEEEEC-CC---CCEEESEEEECCGGGTT
T ss_pred             HHHHHHHHHHHHhCCCE--EEeCCeEeEEEEeC-CeEEEEeCCCc---EEEECCEEEECCCcchh
Confidence            67888888888888999  99999999999876 66888876642   14899999999998764

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.41  E-value=2.1e-12  Score=101.75  Aligned_cols=142  Identities=15%  Similarity=0.063  Sum_probs=82.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (259)
                      .+||+|||||++|+++|+.|+++  |.+|+|+|+.+.+|+.+...        +..............++..        
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~--------g~~~~~~~~~~~~~~~L~~--------  142 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLG--------GQLFSAMVMRKPADVFLDE--------  142 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCC--------BTTCCCEEEETTTHHHHHH--------
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccC--------CccchhhhcchHHHHHHHH--------
Confidence            47999999999999999999997  99999999998877543211        1111100000000001000        


Q ss_pred             ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCC----------------C---cE
Q 024975           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVES----------------N---KW  139 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~----------------~---~~  139 (259)
                       ...++...     .......+..++.+.|.+.+.+ .+++  ++.+++|+++...++                +   ..
T Consensus       143 -~Gv~~~~~-----G~~~~~~~~~d~~~~L~~~a~~~~gV~--i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~  214 (344)
T 3jsk_A          143 -VGVPYEDE-----GDYVVVKHAALFTSTVLSKVLQRPNVK--LFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIA  214 (344)
T ss_dssp             -HTCCCEEC-----SSEEEESCHHHHHHHHHHHHHTCTTEE--EEETEEEEEEEEEEC----------------CCEEEE
T ss_pred             -cCCccccc-----CCeEEEecHHHHHHHHHHHHHhCCCCE--EEeCCEEEEEEecCCcccccccccccccccCCCceEe
Confidence             00111100     0000011236667777777766 4888  999999999987641                1   11


Q ss_pred             EEEEE------ecC----CceEEEEeCEEEEccCCCCC
Q 024975          140 KVKSR------KKD----DVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       140 ~v~~~------~g~----~~~~~~~ad~VIlAtG~~s~  167 (259)
                      .|.+.      ++.    .....+.+++||+|||+.+.
T Consensus       215 GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~  252 (344)
T 3jsk_A          215 GVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGP  252 (344)
T ss_dssp             EEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSS
T ss_pred             EEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCch
Confidence            23222      111    12357999999999997553

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.40  E-value=6.4e-13  Score=107.72  Aligned_cols=58  Identities=17%  Similarity=0.189  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ...+...|.+.+++.|++  ++++++|+++...+ +.|.|.+.++     .+.||.||+|+|.++.
T Consensus       153 ~~~~~~~l~~~a~~~Gv~--i~~~~~V~~i~~~~-~~~~V~t~~g-----~i~a~~VV~A~G~~s~  210 (381)
T 3nyc_A          153 TDALHQGYLRGIRRNQGQ--VLCNHEALEIRRVD-GAWEVRCDAG-----SYRAAVLVNAAGAWCD  210 (381)
T ss_dssp             HHHHHHHHHHHHHHTTCE--EESSCCCCEEEEET-TEEEEECSSE-----EEEESEEEECCGGGHH
T ss_pred             HHHHHHHHHHHHHHCCCE--EEcCCEEEEEEEeC-CeEEEEeCCC-----EEEcCEEEECCChhHH
Confidence            367888888888889999  99999999999876 5688777653     6999999999998763

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.39  E-value=2e-12  Score=105.82  Aligned_cols=152  Identities=17%  Similarity=0.165  Sum_probs=80.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC-----ceeeeCCCCCCCCCCCCCCCCCccccccccceeccc--c
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-----GSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP--R   75 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   75 (259)
                      .+|+||||||+|+++|..|+++|++|+||||.+.+.     ......++..      ..-..+.....+..+.....  .
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~------~~L~~lg~~~~~~~~~~~~~~~~   75 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGK------QALQECLPAENWLAFEEASRYIG   75 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHH------HHHHHHSCHHHHHHHHHHCEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHH------HHHHHcCChHHHHHhhhhhcccC
Confidence            589999999999999999999999999999986542     1111110000      00000000000000000000  0


Q ss_pred             ccceecCCCCCccCCC---------CCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec
Q 024975           76 ELMGFQAYPFVARNYE---------GSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK  146 (259)
Q Consensus        76 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g  146 (259)
                      ....+...........         ..........+..+.+.|.+.   .+..  +++++++++++..+++.++|.+.+|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~---~~~~--v~~~~~v~~~~~~~~~~v~v~~~dG  150 (412)
T 4hb9_A           76 GQSRFYNERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKG---LANT--IQWNKTFVRYEHIENGGIKIFFADG  150 (412)
T ss_dssp             CCCEEECTTSCEEEC--------------CEEEEEHHHHHHHHHTT---CTTT--EECSCCEEEEEECTTSCEEEEETTS
T ss_pred             cceeEecCCcceecccCCccccccccccccceEeeHHHHHHHHHhh---ccce--EEEEEEEEeeeEcCCCeEEEEECCC
Confidence            0000000000000000         000000012234444444332   2445  9999999999987656788998887


Q ss_pred             CCceEEEEeCEEEEccCCCCCCc
Q 024975          147 DDVVEEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       147 ~~~~~~~~ad~VIlAtG~~s~~~  169 (259)
                      .    ++++|+||.|.|..|..+
T Consensus       151 ~----~~~adlvVgADG~~S~vR  169 (412)
T 4hb9_A          151 S----HENVDVLVGADGSNSKVR  169 (412)
T ss_dssp             C----EEEESEEEECCCTTCHHH
T ss_pred             C----EEEeeEEEECCCCCcchH
Confidence            6    799999999999877543

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.38  E-value=5.9e-12  Score=107.22  Aligned_cols=162  Identities=22%  Similarity=0.219  Sum_probs=91.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCC-------CCCCCCCCc------------cc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL-------GVDPNRYPV------------HS   63 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~-------~~~~~~~~~------------~~   63 (259)
                      +||+|||+|++|+++|..|.+.|.+|+|+|+.+.+||.............       +.......+            ..
T Consensus       127 ~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~  206 (572)
T 1d4d_A          127 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDP  206 (572)
T ss_dssp             CSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence            68999999999999999999999999999999888765433221110000       000000000            00


Q ss_pred             cccccceecccccccee---cCCCCCccCC-CCCCCCCC------CCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEE
Q 024975           64 SLYKSLRVNLPRELMGF---QAYPFVARNY-EGSVDLRR------YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL  133 (259)
Q Consensus        64 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~  133 (259)
                      .....+....+. ...+   ...++..... ........      ......+...|.+.+.+.+++  ++++++|++|..
T Consensus       207 ~~v~~~~~~~~~-~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~--i~~~t~v~~l~~  283 (572)
T 1d4d_A          207 ELVKVLANNSSD-SIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTD--IRLNSRVVRILE  283 (572)
T ss_dssp             HHHHHHHHTHHH-HHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCE--EESSEEEEEEEE
T ss_pred             HHHHHHHHccHH-HHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCe--EEecCEEEEEEE
Confidence            000000000000 0000   0111110000 00000000      012467888899999889999  999999999987


Q ss_pred             eC-CCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          134 VE-SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       134 ~~-~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ++ +..+.|.+.+.+++...+.+|.||+|||.++.
T Consensus       284 ~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          284 DASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             C--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             CCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence            65 34455766653444557899999999997664

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.38  E-value=3.2e-13  Score=112.38  Aligned_cols=215  Identities=19%  Similarity=0.187  Sum_probs=102.6

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCC--CCCCCC----------Ccccccccccee
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG--VDPNRY----------PVHSSLYKSLRV   71 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~~~   71 (259)
                      ||+|||+|++|+++|..|++.|.+|+|+||. ..+|..............  ..+...          +........+..
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~   79 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTS   79 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence            7999999999999999999999999999998 444432221111000000  000000          000000000000


Q ss_pred             ccccccceec--CCCCCccCCCCCC---CCCCC---CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEE
Q 024975           72 NLPRELMGFQ--AYPFVARNYEGSV---DLRRY---PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKS  143 (259)
Q Consensus        72 ~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~  143 (259)
                      ..+.....+.  ..++.........   ....+   .....+...|.+.+.+.+++  ++.+++| ++...++....+..
T Consensus        80 ~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~--i~~~~~v-~l~~~~~~v~Gv~v  156 (472)
T 2e5v_A           80 EAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIP--IIEDRLV-EIRVKDGKVTGFVT  156 (472)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCC--EECCCEE-EEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCE--EEECcEE-EEEEeCCEEEEEEE
Confidence            0000000000  1111110000000   00001   12356777787777778999  9999999 99876522223444


Q ss_pred             EecCCceEEEEeCEEEEccCCCCCCccCCCC-CCCCCCCceEEcc-----cCCCCCCCCC-CeEEEEccCcCHHHHHHHH
Q 024975          144 RKKDDVVEEETFDAVVVCNGHFSVPRLAQVP-GIDSWPGKQMHSH-----NYRIPNPFQD-QVVILIGHYASGLDIKRDL  216 (259)
Q Consensus       144 ~~g~~~~~~~~ad~VIlAtG~~s~~~~~~~~-g~~~~~~~~~~~~-----~~~~~~~~~~-~~v~viG~G~~a~e~a~~l  216 (259)
                      .+.+   ..+.+|.||+|||.+  +..+... +.....+......     ...+....+. ..++++|+|  +++++..+
T Consensus       157 ~~~~---g~~~a~~VVlAtGg~--~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg--~~~~ae~~  229 (472)
T 2e5v_A          157 EKRG---LVEDVDKLVLATGGY--SYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGE--VFLLTETL  229 (472)
T ss_dssp             TTTE---EECCCSEEEECCCCC--GGGSSSBSSCTTCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGGC--CEECCTHH
T ss_pred             EeCC---CeEEeeeEEECCCCC--cccCccccCCCCCchHHHHHHHHcCCCEeCCcceEEEeEEEccCCC--ceeeehhh
Confidence            3211   246799999999954  4443322 1112222211000     0111111111 234455766  77777777


Q ss_pred             hcccCeEEEEecCC
Q 024975          217 AGFAKEVHIASRSV  230 (259)
Q Consensus       217 ~~~~~~v~~~~r~~  230 (259)
                      ...|..+ +..+.+
T Consensus       230 ~~~G~~~-v~~~g~  242 (472)
T 2e5v_A          230 RGEGAQI-INENGE  242 (472)
T ss_dssp             HHTTCEE-EETTCC
T ss_pred             cCCceEE-ECCCCC
Confidence            7777655 555544

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.38  E-value=3.3e-12  Score=110.13  Aligned_cols=160  Identities=14%  Similarity=0.082  Sum_probs=90.0

Q ss_pred             CeEEEECCChHHHHHHHHHHH-cCCcEEEEeeCCCcCcee---eeCCCCC--CCCCCCCCCCCCcc-ccccccceeccc-
Q 024975            3 RHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQVGGSW---IYTSETE--SDPLGVDPNRYPVH-SSLYKSLRVNLP-   74 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~-~g~~v~v~e~~~~~gg~~---~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~-   74 (259)
                      +||+||||||+|+++|..|++ .|++|+|+|+.+.++...   ...+...  ...++....  +.. ......+..... 
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~--~~~~~~~~~~~~~~~~~  110 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADS--ILKEACWINDVTFWKPD  110 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHH--HHHHSEEECEEEEEEEC
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHH--HHHhcccccceEEECCC
Confidence            689999999999999999999 999999999986553110   0000000  000000000  000 000000000000 


Q ss_pred             ----cccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCC--ceeEEeceeEEEEEEeCC---CcEEEEEEe
Q 024975           75 ----RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGV--DQVVRLHTEVLNARLVES---NKWKVKSRK  145 (259)
Q Consensus        75 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~v~~~~~v~~i~~~~~---~~~~v~~~~  145 (259)
                          ........++....  ..........++..+.++|.+.+.+.++  +  ++++++|++++.+++   ..+.+.+.+
T Consensus       111 ~~~~g~~~~~~~~~~~~~--~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~--v~~~~~v~~l~~~~~~~~~~v~v~~~~  186 (639)
T 2dkh_A          111 PGQPGRIARHGRVQDTED--GLSEFPHVILNQARVHDHYLERMRNSPSRLE--PHYARRVLDVKVDHGAADYPVTVTLER  186 (639)
T ss_dssp             TTSTTCEEEEEEEESSCT--TSCSSCEEECCHHHHHHHHHHHHHHSTTCCC--CBCSEEEEEEEECTTCSSCCEEEEEEE
T ss_pred             CCCCcceEeecccCcccC--CCCCCceEeeCHHHHHHHHHHHHHhCCCCcE--EecCCEEEEEEECCCCCcCCEEEEEEe
Confidence                00000000000000  0001111234567899999999988876  7  999999999998652   258888775


Q ss_pred             ----cCCceEEEEeCEEEEccCCCCCC
Q 024975          146 ----KDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       146 ----g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                          .++....+++|+||.|+|.+|..
T Consensus       187 ~~~~~~G~~~~i~a~~vVgADG~~S~v  213 (639)
T 2dkh_A          187 CDAAHAGQIETVQARYVVGCDGARSNV  213 (639)
T ss_dssp             CSGGGTTCEEEEEEEEEEECCCTTCHH
T ss_pred             ccccCCCCeEEEEeCEEEECCCcchHH
Confidence                23444579999999999987753

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.37  E-value=3.4e-12  Score=103.55  Aligned_cols=57  Identities=25%  Similarity=0.181  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEE-EEEEecCCceEEEEeCEEEEccCCCC
Q 024975          102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~-v~~~~g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      ...+...+.+.+.+.|++  ++.+++|+++...+ +.+. |.+.++     .+.+|.||+|+|.++
T Consensus       148 ~~~l~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~-~~v~gv~~~~g-----~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          148 PFEATTAFAVKAKEYGAK--LLEYTEVKGFLIEN-NEIKGVKTNKG-----IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCE--EECSCCEEEEEESS-SBEEEEEETTE-----EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCE--EECCceEEEEEEEC-CEEEEEEECCc-----EEECCEEEECcchhH
Confidence            467888888888888998  99999999999876 5666 766442     689999999999865

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.36  E-value=5.6e-13  Score=109.00  Aligned_cols=57  Identities=21%  Similarity=0.144  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      ..+...+.+.+.+.|++  ++++++|+++...++..+.|.+.++     .+.+|.||+|+|.++
T Consensus       174 ~~~~~~l~~~~~~~g~~--i~~~~~v~~i~~~~~~~~~v~~~~g-----~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          174 DHVAWAFARKANEMGVD--IIQNCEVTGFIKDGEKVTGVKTTRG-----TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHHHTTCE--EECSCCEEEEEESSSBEEEEEETTC-----CEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCE--EEcCCeEEEEEEeCCEEEEEEeCCc-----eEECCEEEECCchhH
Confidence            57888888888888998  9999999999987534466776543     589999999999765

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.36  E-value=6.6e-12  Score=108.58  Aligned_cols=163  Identities=17%  Similarity=0.117  Sum_probs=90.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHH-----cCCcEEEEeeCCCcCc---eeeeCCCCC--CCCCCCCCCCCCcccccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLR-----EGHTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRV   71 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~-----~g~~v~v~e~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   71 (259)
                      .+||+||||||+||++|..|++     .|++|+|+|+.+.+..   .....++..  ...+++.... .........+..
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l-~~~~~~~~~~~~   86 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKI-LSEANDMSTIAL   86 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHH-HTTCBCCCEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHH-HHhccccceEEE
Confidence            3699999999999999999999     9999999999764320   000000000  0000000000 000000000000


Q ss_pred             ccccc--cce-ecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC---CceeEEeceeEEEEEEeC-------CCc
Q 024975           72 NLPRE--LMG-FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG---VDQVVRLHTEVLNARLVE-------SNK  138 (259)
Q Consensus        72 ~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~v~~~~~v~~i~~~~-------~~~  138 (259)
                      ..+..  ... ...++....  ..........++..+.++|.+.+.+.+   ++  ++++++++++..++       +..
T Consensus        87 ~~~~~~g~i~~~~~~~~~~~--~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~--v~~g~~v~~~~~d~~~~~~~~~~~  162 (665)
T 1pn0_A           87 YNPDENGHIRRTDRIPDTLP--GISRYHQVVLHQGRIERRILDSIAEISDTRIK--VERPLIPEKMEIDSSKAEDPEAYP  162 (665)
T ss_dssp             EEECTTSCEEEEEEEESSCT--TSCSSCCEECCHHHHHHHHHHHHHHHHTTSSC--EECSEEEEEEEECGGGTTCTTCCC
T ss_pred             EeCCCCcceEeecccCcccC--CCCCCeeEEeeHHHHHHHHHHHHHhcCCCceE--EEeCCEEEEEEecCcccccCCCCC
Confidence            00000  000 000000000  000111222566888899999888876   78  99999999998864       235


Q ss_pred             EEEEEEec----------------------------------------CCceEEEEeCEEEEccCCCCCCc
Q 024975          139 WKVKSRKK----------------------------------------DDVVEEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       139 ~~v~~~~g----------------------------------------~~~~~~~~ad~VIlAtG~~s~~~  169 (259)
                      +++.+.+.                                        ++....+++|+||.|+|..|..+
T Consensus       163 V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~VR  233 (665)
T 1pn0_A          163 VTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVR  233 (665)
T ss_dssp             EEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHH
T ss_pred             EEEEEEecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCCHHH
Confidence            77777652                                        34446799999999999877543

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.36  E-value=7.9e-13  Score=112.17  Aligned_cols=184  Identities=16%  Similarity=0.168  Sum_probs=102.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC-CcCceeeeCCCCCCCCCCCCCCCCCcc-ccccccceecc------
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVH-SSLYKSLRVNL------   73 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------   73 (259)
                      .+||+|||||++|+++|..|++.|.+|+|+|+.. .+|+.+            |.+...... ......+....      
T Consensus        21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~------------c~ps~gGia~~~lv~el~al~g~~~~~   88 (641)
T 3cp8_A           21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMS------------CNPAIGGVAKGQITREIDALGGEMGKA   88 (641)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCS------------SCSEEECHHHHHHHHHHHHHTCSHHHH
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCc------------cccchhhhhHHHHHHHHHhcccHHHHH
Confidence            4899999999999999999999999999999974 343311            111000000 00000000000      


Q ss_pred             -ccccceecCCCCCccCCCCCC-CCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEE-EEEEecCCc
Q 024975           74 -PRELMGFQAYPFVARNYEGSV-DLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDV  149 (259)
Q Consensus        74 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~-v~~~~g~~~  149 (259)
                       ......|....   ....... .......+..+...+.+.+.+. +++  + ++.+|+++...+ +.+. |.+.+|.  
T Consensus        89 ~d~~gi~f~~l~---~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~--I-~~~~V~~L~~d~-g~V~GV~t~~G~--  159 (641)
T 3cp8_A           89 IDATGIQFRMLN---RSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNID--L-LQDTVIGVSANS-GKFSSVTVRSGR--  159 (641)
T ss_dssp             HHHHEEEEEEEC---SSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEE--E-EECCEEEEEEET-TEEEEEEETTSC--
T ss_pred             HHhcCCchhhcc---cccCccccchhhhcCHHHHHHHHHHHHHhCCCCE--E-EeeEEEEEEecC-CEEEEEEECCCc--
Confidence             00000110000   0000000 0001234467888888888774 777  6 466999988765 4443 6666553  


Q ss_pred             eEEEEeCEEEEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (259)
Q Consensus       150 ~~~~~ad~VIlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~  229 (259)
                        .+.||.||+|||.++...  ...|...      ..          +.++  + |+.++++++..|.+.|.+|..+...
T Consensus       160 --~i~Ad~VVLATG~~s~~~--i~~G~~~------~~----------~g~~--v-G~~~a~~la~~L~~~G~kv~~l~tG  216 (641)
T 3cp8_A          160 --AIQAKAAILACGTFLNGL--IHIGMDH------FP----------GGRS--T-AEPPVEGLTESLASLGFSFGRLKTG  216 (641)
T ss_dssp             --EEEEEEEEECCTTCBTCE--EEETTEE------EE----------CSSS--T-TSCCBCSHHHHHHHTTCCEEEEEEE
T ss_pred             --EEEeCEEEECcCCCCCcc--ceeeeee------ec----------cccc--c-CCchhhhhHHHHHhCCceEEeecCC
Confidence              799999999999643322  2222221      10          0111  1 3677889999998888888766543

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.35  E-value=7.2e-12  Score=105.18  Aligned_cols=63  Identities=14%  Similarity=0.110  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEccCCCCC
Q 024975          102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ...+...+.+.+.+.|++  ++.+++|+++...+ +.|.|.+.+. +++...+.+|.||+|+|.|+.
T Consensus       148 ~~~l~~~l~~~a~~~Gv~--i~~~~~V~~l~~~~-~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~  211 (501)
T 2qcu_A          148 DARLVLANAQMVVRKGGE--VLTRTRATSARREN-GLWIVEAEDIDTGKKYSWQARGLVNATGPWVK  211 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCE--EECSEEEEEEEEET-TEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred             HHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEeC-CEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence            467888888888888999  99999999999876 7788888652 233457999999999998764

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.35  E-value=7.1e-12  Score=106.87  Aligned_cols=63  Identities=11%  Similarity=-0.073  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEe-CCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLV-ESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~-~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ..+...|.+.+.+.+++  ++.++.|+++..+ ++..+.|...+ .+++...+.++.||+|||.++.
T Consensus       143 ~~l~~~L~~~~~~~gv~--i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~  207 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTT--IFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR  207 (588)
T ss_dssp             HHHHHHHHHHHHHTTCE--EEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred             HHHHHHHHHHHHhCCCE--EEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCcc
Confidence            56778888888888999  9999999999985 42345566654 3344567899999999998654

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.35  E-value=3.3e-12  Score=104.21  Aligned_cols=56  Identities=18%  Similarity=0.181  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      ..+...+.+.+.+.|++  ++++++|+++...+ +.|.|.+.++     .+.||.||+|+|.++
T Consensus       153 ~~~~~~l~~~a~~~Gv~--i~~~~~V~~i~~~~-~~v~v~t~~g-----~i~a~~VV~A~G~~s  208 (397)
T 2oln_A          153 RGTLAALFTLAQAAGAT--LRAGETVTELVPDA-DGVSVTTDRG-----TYRAGKVVLACGPYT  208 (397)
T ss_dssp             HHHHHHHHHHHHHTTCE--EEESCCEEEEEEET-TEEEEEESSC-----EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCE--EECCCEEEEEEEcC-CeEEEEECCC-----EEEcCEEEEcCCcCh
Confidence            56777888888888998  99999999999876 5677765432     699999999999764

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.33  E-value=7.5e-12  Score=106.99  Aligned_cols=64  Identities=11%  Similarity=0.104  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+...|.+.+.+.+++  ++.++.|+++..+++....|...+ .+++...+.++.||+|||.++..
T Consensus       155 ~~l~~~L~~~~~~~gv~--i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTS--YFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRT  219 (621)
T ss_dssp             HHHHHHHHHHHTTSCCE--EEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhCCCE--EEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccccc
Confidence            46777888887778998  999999999987653334566554 33555679999999999987643

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.32  E-value=8.8e-12  Score=97.68  Aligned_cols=140  Identities=14%  Similarity=0.064  Sum_probs=80.5

Q ss_pred             CeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      +||+|||||++|+++|..|++.  |.+|+|+|+.+.+|+......        ..............++..         
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g--------~~~~~~~~~~~~~~~L~~---------  128 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGG--------QLFSAMVMRKPAHLFLQE---------  128 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCG--------GGCCCEEEETTTHHHHHH---------
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccC--------cccchhhhhhHHHHHHHh---------
Confidence            5999999999999999999998  999999999988875432110        000000000000000000         


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeC--C----CcEEEEEEe------c-
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVE--S----NKWKVKSRK------K-  146 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~--~----~~~~v~~~~------g-  146 (259)
                      ...++...     ..........++...+.+.+.+. +++  ++.+++|+++...+  +    ....|.+..      + 
T Consensus       129 ~Gv~~~~~-----g~~~~~~~~~~~~~~L~~~a~~~~GV~--i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~  201 (326)
T 2gjc_A          129 LEIPYEDE-----GDYVVVKHAALFISTVLSKVLQLPNVK--LFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHG  201 (326)
T ss_dssp             TTCCCEEC-----SSEEEESCHHHHHHHHHHHHHTSTTEE--EETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC--
T ss_pred             hCcccccC-----CCeEEEcchHHHHHHHHHHHHHhcCcE--EEecceeeeeeecccccCCCcEEEEEEecceeeccccc
Confidence            00111100     00000113366777777777664 888  89999999998763  1    222343321      1 


Q ss_pred             ---CCceEEEEe---------------CEEEEccCCCC
Q 024975          147 ---DDVVEEETF---------------DAVVVCNGHFS  166 (259)
Q Consensus       147 ---~~~~~~~~a---------------d~VIlAtG~~s  166 (259)
                         ......+.+               +.||+|||+.+
T Consensus       202 ~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~  239 (326)
T 2gjc_A          202 TQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDG  239 (326)
T ss_dssp             -CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC-
T ss_pred             ceeccCceEEEEeeccccccccccccCCEEEECcCCCc
Confidence               011246899               99999999743

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.31  E-value=1.8e-11  Score=105.44  Aligned_cols=63  Identities=11%  Similarity=0.149  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ..+...|.+.+.+.+++  ++.++.|+++...++....+...+ .++....+.++.||+|||.++.
T Consensus       158 ~~l~~~L~~~a~~~gv~--i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~  221 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVS--IQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGR  221 (660)
T ss_dssp             HHHHHHHHHHHHHHTCE--EECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGG
T ss_pred             HHHHHHHHHHHHhCCCE--EEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcchh
Confidence            46778888888888999  999999999987653334455543 2344557999999999998664

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.29  E-value=5.1e-12  Score=104.20  Aligned_cols=42  Identities=31%  Similarity=0.567  Sum_probs=39.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      |+||+|||||++|+++|+.|.++|.+|+|+|+.+.+||.+..
T Consensus         1 ~~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   42 (431)
T 3k7m_X            1 MYDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYS   42 (431)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecc
Confidence            589999999999999999999999999999999999988753

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.28  E-value=1.9e-11  Score=104.44  Aligned_cols=65  Identities=14%  Similarity=0.068  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHhC-CceeEEeceeEEEEEEeCCCcEEEEEEe-cCCceEEEEeCEEEEccCCCCCCc
Q 024975          103 EEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~~~  169 (259)
                      ..+...|.+.+.+.+ ++  ++.++.|+++..+++..+.+...+ .+++...+.++.||+|||.++...
T Consensus       134 ~~l~~~L~~~~~~~gnv~--i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~~  200 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQ--RFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY  200 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEE--EEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGS
T ss_pred             HHHHHHHHHHHHhCCCcE--EEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcccc
Confidence            567777777777777 88  999999999988753334454443 334445799999999999876543

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.28  E-value=1.2e-11  Score=104.81  Aligned_cols=62  Identities=21%  Similarity=0.278  Sum_probs=48.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC-cEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       100 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+..+..+|.+.+.+.|++  ++.+ +|+++...+++ .+.|.+.+|.    .+.+|.||+|+|.+|..
T Consensus       162 i~~~~l~~~L~~~a~~~gv~--~~~~-~v~~i~~~~~g~~~~v~~~~g~----~i~ad~vV~A~G~~s~~  224 (538)
T 2aqj_A          162 FDAHLVADFLKRWAVERGVN--RVVD-EVVDVRLNNRGYISNLLTKEGR----TLEADLFIDCSGMRGLL  224 (538)
T ss_dssp             ECHHHHHHHHHHHHHHTTCE--EEEC-CEEEEEECTTSCEEEEEETTSC----EECCSEEEECCGGGCCC
T ss_pred             EeHHHHHHHHHHHHHHCCCE--EEEe-eEeEEEEcCCCcEEEEEECCCc----EEEeCEEEECCCCchhh
Confidence            35588999999999888998  8888 89999886533 2456665543    79999999999976644

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=99.28  E-value=2.5e-12  Score=104.33  Aligned_cols=136  Identities=21%  Similarity=0.237  Sum_probs=81.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCc---CceeeeCCCCCCCCCCCCCCCCCcccccc-cc-cee-ccc
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQV---GGSWIYTSETESDPLGVDPNRYPVHSSLY-KS-LRV-NLP   74 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~-~~~   74 (259)
                      +||+||||||+|+++|..|+++  |++|+|+|+.+.+   |+.....+......         ...... .. +.. ..+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~   71 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHP---------ANPLSYLDAPERLNPQF   71 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCT---------TCGGGGSSCGGGGCCEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhh---------cCcchhhhhhHHHhhcc
Confidence            4899999999999999999999  9999999998776   54444333221100         000000 00 000 000


Q ss_pred             cccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEE
Q 024975           75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET  154 (259)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~  154 (259)
                      .....+........  ...........+.++.+.|.+.+.+.+++  ++++++|++++..            .    .+.
T Consensus        72 ~~~~~~~~~g~~~~--~~~~~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~------------~----~~~  131 (381)
T 3c4a_A           72 LEDFKLVHHNEPSL--MSTGVLLCGVERRGLVHALRDKCRSQGIA--IRFESPLLEHGEL------------P----LAD  131 (381)
T ss_dssp             ECCEEEEESSSEEE--CCCCSCEEEEEHHHHHHHHHHHHHHTTCE--EETTCCCCSGGGC------------C----GGG
T ss_pred             ccceEEEeCCeeEE--ecCCCceeeecHHHHHHHHHHHHHHCCCE--EEeCCEeccchhc------------c----ccc
Confidence            00111110000000  00001111246688999999999888998  9999998887521            0    257


Q ss_pred             eCEEEEccCCCCC
Q 024975          155 FDAVVVCNGHFSV  167 (259)
Q Consensus       155 ad~VIlAtG~~s~  167 (259)
                      +|.||.|+|.+|.
T Consensus       132 ad~vV~AdG~~S~  144 (381)
T 3c4a_A          132 YDLVVLANGVNHK  144 (381)
T ss_dssp             CSEEEECCGGGGG
T ss_pred             CCEEEECCCCCch
Confidence            9999999998775

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.28  E-value=2.5e-12  Score=99.80  Aligned_cols=42  Identities=36%  Similarity=0.606  Sum_probs=39.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~   42 (259)
                      |++||+||||||+||+||..|+++|++|+||||++.+||.+.
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~   42 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMS   42 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence            789999999999999999999999999999999999998764

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.27  E-value=1.1e-11  Score=104.36  Aligned_cols=62  Identities=26%  Similarity=0.302  Sum_probs=48.8

Q ss_pred             CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC-cEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       100 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+..+.+.|.+.+.+.|++  ++.+ +|+++...+++ .+.|.+.+|.    .+.+|.||.|+|.+|..
T Consensus       170 ~~~~~l~~~L~~~a~~~gv~--~~~~-~v~~i~~~~~~~~~~v~~~~g~----~~~ad~vV~A~G~~S~~  232 (511)
T 2weu_A          170 FDADEVARYLSEYAIARGVR--HVVD-DVQHVGQDERGWISGVHTKQHG----EISGDLFVDCTGFRGLL  232 (511)
T ss_dssp             ECHHHHHHHHHHHHHHTTCE--EEEC-CEEEEEECTTSCEEEEEESSSC----EEECSEEEECCGGGCCC
T ss_pred             EcHHHHHHHHHHHHHHCCCE--EEEC-eEeEEEEcCCCCEEEEEECCCC----EEEcCEEEECCCcchHH
Confidence            35688999999999888998  8888 99999885522 2556666543    79999999999987654

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.27  E-value=9.5e-12  Score=104.54  Aligned_cols=41  Identities=32%  Similarity=0.527  Sum_probs=32.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~   42 (259)
                      |++|+|||||++||+||.+|+++|++|+|+|+++.+||.+.
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~   41 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAY   41 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------C
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEE
Confidence            68999999999999999999999999999999999998754

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.26  E-value=5.9e-12  Score=106.35  Aligned_cols=162  Identities=20%  Similarity=0.133  Sum_probs=78.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCC------------CCCccccccccce
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN------------RYPVHSSLYKSLR   70 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~   70 (259)
                      +||+|||||++|+++|+.|++ |.+|+|+||.+..++.............+....            ...........+.
T Consensus         9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~ds~~~~~~d~l~~g~g~~d~~~v~~~~   87 (540)
T 1chu_A            9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVEFVA   87 (540)
T ss_dssp             CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC-------------CCSHHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred             CCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCChhhcCCCEEEecCCCCCHHHHHHHHHHhhcccCCHHHHHHHH
Confidence            699999999999999999999 999999999987665443322111111000000            0000000000000


Q ss_pred             eccccccceec--CCCCCccC----------CCCCC--CCCCC----CCHHHHHHHHHHHHHH-hCCceeEEeceeEEEE
Q 024975           71 VNLPRELMGFQ--AYPFVARN----------YEGSV--DLRRY----PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNA  131 (259)
Q Consensus        71 ~~~~~~~~~~~--~~~~~~~~----------~~~~~--~~~~~----~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i  131 (259)
                      ...+.....+.  ..++....          .....  ....+    .....+...|.+.+.+ .+++  ++.++.|+++
T Consensus        88 ~~~~~~i~~l~~~Gv~f~~~~~~~~~g~~~~~~~gg~~~~r~~~~~d~~g~~l~~~L~~~~~~~~gv~--i~~~~~v~~L  165 (540)
T 1chu_A           88 SNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIR--VLERTNAVDL  165 (540)
T ss_dssp             HHHHHHHHHHHHTTCC--------------------------------------CCCHHHHHHCTTEE--EECSEEEEEE
T ss_pred             HhHHHHHHHHHHcCCCcccCcccCcCCccccccccccccCeEEEeCCCCHHHHHHHHHHHHHcCCCCE--EEeCcEEEEE
Confidence            00000000000  01111000          00000  00111    0123555666677766 6888  9999999999


Q ss_pred             EE-eCC------CcEEEEEEe-cCCceEEEEeCEEEEccCCCCC
Q 024975          132 RL-VES------NKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       132 ~~-~~~------~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      .. .++      ..+.|.+.+ .+++...+.++.||+|||.++.
T Consensus       166 ~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~  209 (540)
T 1chu_A          166 IVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASK  209 (540)
T ss_dssp             EEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGG
T ss_pred             EEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence            98 332      234466664 2344557899999999997663

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.26  E-value=4.1e-11  Score=101.93  Aligned_cols=63  Identities=17%  Similarity=0.044  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEccCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ..+...+...+.+.|++  ++.+++|+++..+++..|.|.+.+. +++...+.||.||+|+|.|+.
T Consensus       188 ~~l~~~l~~~a~~~Ga~--i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~  251 (571)
T 2rgh_A          188 ARLVIDNIKKAAEDGAY--LVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVD  251 (571)
T ss_dssp             HHHHHHHHHHHHHTTCE--EESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHH
T ss_pred             HHHHHHHHHHHHHcCCe--EEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHH
Confidence            55666677777788999  9999999999987644466777642 233347999999999998763

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.25  E-value=1.5e-11  Score=102.65  Aligned_cols=43  Identities=37%  Similarity=0.487  Sum_probs=39.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCCCcCceeee
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~~~gg~~~~   43 (259)
                      |++||+|||||++||++|++|.++|.  +|+|+|+++.+||.+..
T Consensus         1 m~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t   45 (477)
T 3nks_A            1 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRS   45 (477)
T ss_dssp             -CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCE
T ss_pred             CCceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEE
Confidence            67999999999999999999999999  99999999999987644

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.25  E-value=9.4e-12  Score=103.64  Aligned_cols=42  Identities=29%  Similarity=0.446  Sum_probs=38.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC------CcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG------HTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g------~~v~v~e~~~~~gg~~~~   43 (259)
                      ++||+|||||++||++|++|.++|      .+|+|+|+.+.+||....
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s   52 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQT   52 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEE
Confidence            589999999999999999999999      999999999999876543

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.23  E-value=4.4e-11  Score=101.53  Aligned_cols=62  Identities=21%  Similarity=0.162  Sum_probs=48.6

Q ss_pred             CCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCC-cEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975          100 PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       100 ~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+..+.++|.+.+.+. |++  ++++ +|+++...+++ .+.|.+.+|.    .+.+|.||+|+|.+|..
T Consensus       191 ~~~~~l~~~L~~~~~~~~Gv~--i~~~-~V~~i~~~~~g~~~~v~~~~G~----~i~ad~vI~A~G~~S~~  254 (550)
T 2e4g_A          191 FDAHLVADFLRRFATEKLGVR--HVED-RVEHVQRDANGNIESVRTATGR----VFDADLFVDCSGFRGLL  254 (550)
T ss_dssp             ECHHHHHHHHHHHHHHHSCCE--EEEC-CEEEEEECTTSCEEEEEETTSC----EEECSEEEECCGGGCCC
T ss_pred             EcHHHHHHHHHHHHHhcCCcE--EEEC-eEeEEEEcCCCCEEEEEECCCC----EEECCEEEECCCCchhh
Confidence            45678999999999988 999  8999 99999876522 2456665543    79999999999976643

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.22  E-value=2.7e-12  Score=104.94  Aligned_cols=56  Identities=13%  Similarity=0.083  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEE---------EEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVL---------NARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~---------~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      ..+...|.+.+.+.|++  ++++++|+         ++...+ +.|.|.+.+     ..+.||.||+|+|.++
T Consensus       172 ~~l~~~L~~~~~~~Gv~--i~~~~~v~~~~g~~~~~~i~~~~-~~v~v~~~~-----g~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          172 GSLALLAAQQAIGQGAG--LLLNTRAELVPGGVRLHRLTVTN-THQIVVHET-----RQIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHHHTTTCE--EECSCEEEEETTEEEEECBCC--------CBCC-----EEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCE--EEcCCEEEeccccccccceEeeC-CeEEEEECC-----cEEECCEEEECCCccH
Confidence            56888888888888998  99999999         776654 456555433     2689999999999875

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.20  E-value=5.8e-11  Score=105.50  Aligned_cols=58  Identities=21%  Similarity=0.208  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCC
Q 024975          102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      ...+...|.+.+.+.|++  ++.+++|+++...++..+.|.+.++     .+.||.||+|+|.++
T Consensus       150 p~~l~~~L~~~a~~~Gv~--i~~~t~V~~i~~~~~~v~~V~t~~G-----~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          150 AARAVQLLIKRTESAGVT--YRGSTTVTGIEQSGGRVTGVQTADG-----VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEETTE-----EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCE--EECCceEEEEEEeCCEEEEEEECCc-----EEECCEEEECCccch
Confidence            367888888888889999  9999999999987533345665442     699999999999875

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.20  E-value=3.7e-10  Score=97.38  Aligned_cols=67  Identities=9%  Similarity=-0.023  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHh-CC-ceeEEeceeEEEEEEeCC---CcEEEEEEe-cCCceEEEEeCEEEEccCCCCCCccC
Q 024975          103 EEVLRYLQNFAREF-GV-DQVVRLHTEVLNARLVES---NKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVPRLA  171 (259)
Q Consensus       103 ~~~~~~l~~~~~~~-~~-~~~v~~~~~v~~i~~~~~---~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~~~~~  171 (259)
                      ..+...+.+.+.+. ++ +  ++.++.|+++..+++   ....|...+ .++....+.++.||+|||.++....|
T Consensus       151 ~~~~~~l~~~~~~~~gv~~--i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~~y~~  223 (643)
T 1jnr_A          151 ESYKPIIAEAAKMAVGEEN--IYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRP  223 (643)
T ss_dssp             TTHHHHHHHHHHHHHCGGG--EECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCC
T ss_pred             HHHHHHHHHHHHhcCCCcE--EEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcccccccC
Confidence            45667777777777 99 8  999999999988653   333454432 23444578999999999987764434

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.19  E-value=1.4e-11  Score=102.02  Aligned_cols=59  Identities=22%  Similarity=0.238  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHhCCceeEEeceeEEEEEE---------------eCCCcEEEEEEecCCceEEE--EeCEEEEccCC
Q 024975          102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARL---------------VESNKWKVKSRKKDDVVEEE--TFDAVVVCNGH  164 (259)
Q Consensus       102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~---------------~~~~~~~v~~~~g~~~~~~~--~ad~VIlAtG~  164 (259)
                      ...+...+.+.+.+.|++  ++.+++|+++..               .+++.+.|.+.++     .+  .||.||+|+|.
T Consensus       180 ~~~l~~~L~~~~~~~Gv~--i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-----~i~~~Ad~VV~AtG~  252 (448)
T 3axb_A          180 AEKVVDYYYRRASGAGVE--FIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-----TRVEVGEKLVVAAGV  252 (448)
T ss_dssp             HHHHHHHHHHHHHHTTCE--EEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-----CEEEEEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHhCCCE--EEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-----EEeecCCEEEECCCc
Confidence            368888888888889999  999999999987               3322356666543     47  99999999998


Q ss_pred             CCC
Q 024975          165 FSV  167 (259)
Q Consensus       165 ~s~  167 (259)
                      ++.
T Consensus       253 ~s~  255 (448)
T 3axb_A          253 WSN  255 (448)
T ss_dssp             GHH
T ss_pred             CHH
Confidence            754

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.18  E-value=5.7e-11  Score=100.28  Aligned_cols=42  Identities=33%  Similarity=0.484  Sum_probs=39.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      ++||+|||||++||+||..|.+.|.+|+|+|+++.+||.+..
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t   45 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYT   45 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceee
Confidence            579999999999999999999999999999999999987644

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.17  E-value=1.4e-10  Score=97.87  Aligned_cols=62  Identities=15%  Similarity=0.126  Sum_probs=47.2

Q ss_pred             CCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCCC-cEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975          100 PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       100 ~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+..+.++|.+.+.+ .|++  ++.+ +|+++...+++ .+.|.+.+|.    .+.+|+||.|+|.+|..
T Consensus       172 ~~r~~l~~~L~~~a~~~~Gv~--i~~~-~v~~i~~~~~g~~~~v~~~~g~----~i~ad~vV~AdG~~S~~  235 (526)
T 2pyx_A          172 LNAAKFSQLLTEHCTQKLGVT--HIRD-HVSQIINNQHGDIEKLITKQNG----EISGQLFIDCTGAKSLL  235 (526)
T ss_dssp             ECHHHHHHHHHHHHHHTSCCE--EEEC-CEEEEEECTTSCEEEEEESSSC----EEECSEEEECSGGGCCC
T ss_pred             EcHHHHHHHHHHHHHhcCCCE--EEEe-EEEEEEecCCCcEEEEEECCCC----EEEcCEEEECCCcchHH
Confidence            3568899999999988 8998  8888 69999886522 2345555443    59999999999976643

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.14  E-value=4.3e-10  Score=93.30  Aligned_cols=100  Identities=24%  Similarity=0.281  Sum_probs=79.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+.                                           
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l-------------------------------------------  203 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRIL-------------------------------------------  203 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccc-------------------------------------------
Confidence            3689999999999999999999999999999975320                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +.             +  ..++.+.+.+.+++.+++  ++.+++|++++..+ +.+.+.+.++.    .+.+|.||+|
T Consensus       204 --~~-------------~--~~~~~~~l~~~l~~~Gv~--i~~~~~V~~i~~~~-~~v~v~~~~g~----~i~~D~vv~A  259 (455)
T 2yqu_A          204 --PT-------------M--DLEVSRAAERVFKKQGLT--IRTGVRVTAVVPEA-KGARVELEGGE----VLEADRVLVA  259 (455)
T ss_dssp             --TT-------------S--CHHHHHHHHHHHHHHTCE--EECSCCEEEEEEET-TEEEEEETTSC----EEEESEEEEC
T ss_pred             --cc-------------c--CHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeC-CEEEEEECCCe----EEEcCEEEEC
Confidence              00             0  067777888888888999  99999999998765 55666665543    7999999999


Q ss_pred             cCCCCCCcc
Q 024975          162 NGHFSVPRL  170 (259)
Q Consensus       162 tG~~s~~~~  170 (259)
                      +|  ..|+.
T Consensus       260 ~G--~~p~~  266 (455)
T 2yqu_A          260 VG--RRPYT  266 (455)
T ss_dssp             SC--EEECC
T ss_pred             cC--CCcCC
Confidence            99  45544

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.14  E-value=1.5e-10  Score=99.72  Aligned_cols=64  Identities=13%  Similarity=-0.027  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHh--CCceeEEeceeEEEEEEeCC---CcEEEEEEe-cCCceEEEEeCEEEEccCCCCCC
Q 024975          103 EEVLRYLQNFAREF--GVDQVVRLHTEVLNARLVES---NKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       103 ~~~~~~l~~~~~~~--~~~~~v~~~~~v~~i~~~~~---~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+...|.+.+.+.  +++  ++.++.|+++..+++   ....+...+ .+++...+.|+.||+|||.++..
T Consensus       166 ~~i~~~L~~~a~~~~~gV~--i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~~  235 (662)
T 3gyx_A          166 ESYKVIVAEAAKNALGQDR--IIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVNV  235 (662)
T ss_dssp             TSHHHHHHHHHHHHHCTTT--EECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSS
T ss_pred             HHHHHHHHHHHHhcCCCcE--EEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCccccc
Confidence            56777788888777  999  999999999988764   334454433 23555679999999999987643

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.13  E-value=5.2e-10  Score=90.78  Aligned_cols=97  Identities=21%  Similarity=0.166  Sum_probs=79.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+..                                          
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------------------------------------  182 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMP------------------------------------------  182 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhh------------------------------------------
Confidence            46899999999999999999999999999999753210                                          


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                         .            .++  .++.+.+.+.+++.+++  ++.+++|++++..+ +.+.+.+.++.    .+.+|.||+|
T Consensus       183 ---~------------~~~--~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~d~vv~a  238 (384)
T 2v3a_A          183 ---G------------LLH--PAAAKAVQAGLEGLGVR--FHLGPVLASLKKAG-EGLEAHLSDGE----VIPCDLVVSA  238 (384)
T ss_dssp             ---T------------TSC--HHHHHHHHHHHHTTTCE--EEESCCEEEEEEET-TEEEEEETTSC----EEEESEEEEC
T ss_pred             ---c------------ccC--HHHHHHHHHHHHHcCCE--EEeCCEEEEEEecC-CEEEEEECCCC----EEECCEEEEC
Confidence               0            001  67778888888888999  99999999998765 56777776654    7999999999


Q ss_pred             cCC
Q 024975          162 NGH  164 (259)
Q Consensus       162 tG~  164 (259)
                      +|.
T Consensus       239 ~G~  241 (384)
T 2v3a_A          239 VGL  241 (384)
T ss_dssp             SCE
T ss_pred             cCC
Confidence            994

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.12  E-value=1.1e-09  Score=91.00  Aligned_cols=105  Identities=27%  Similarity=0.334  Sum_probs=81.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+|+|+.+.+.                                           
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------------  205 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEIL-------------------------------------------  205 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccc-------------------------------------------
Confidence            3689999999999999999999999999999975331                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIl  160 (259)
                        +             .+  ..++.+.+.+.+++.|++  ++++++|++++..+ +.+.+.+.+. +++...+.+|.||+
T Consensus       206 --~-------------~~--~~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vv~  265 (464)
T 2eq6_A          206 --P-------------QG--DPETAALLRRALEKEGIR--VRTKTKAVGYEKKK-DGLHVRLEPAEGGEGEEVVVDKVLV  265 (464)
T ss_dssp             --T-------------TS--CHHHHHHHHHHHHHTTCE--EECSEEEEEEEEET-TEEEEEEEETTCCSCEEEEESEEEE
T ss_pred             --c-------------cc--CHHHHHHHHHHHHhcCCE--EEcCCEEEEEEEeC-CEEEEEEeecCCCceeEEEcCEEEE
Confidence              0             00  067778888888889999  99999999998765 5566776621 13234789999999


Q ss_pred             ccCCCCCCccC
Q 024975          161 CNGHFSVPRLA  171 (259)
Q Consensus       161 AtG~~s~~~~~  171 (259)
                      |+|  ..|+.+
T Consensus       266 a~G--~~p~~~  274 (464)
T 2eq6_A          266 AVG--RKPRTE  274 (464)
T ss_dssp             CSC--EEESCT
T ss_pred             CCC--cccCCC
Confidence            999  455543

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.11  E-value=9.2e-10  Score=91.18  Aligned_cols=101  Identities=18%  Similarity=0.194  Sum_probs=80.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+.                                           
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------------  203 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-------------------------------------------  203 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchh-------------------------------------------
Confidence            3689999999999999999999999999999975331                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +             .+.  .++.+.+.+.+++.|++  ++.+++|++++..+++.+.+.+.++.    .+.+|.||+|
T Consensus       204 --~-------------~~~--~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~g~----~i~~D~vv~a  260 (450)
T 1ges_A          204 --P-------------SFD--PMISETLVEVMNAEGPQ--LHTNAIPKAVVKNTDGSLTLELEDGR----SETVDCLIWA  260 (450)
T ss_dssp             --T-------------TSC--HHHHHHHHHHHHHHSCE--EECSCCEEEEEECTTSCEEEEETTSC----EEEESEEEEC
T ss_pred             --h-------------hhh--HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCcEEEEEECCCc----EEEcCEEEEC
Confidence              0             000  56777888888889999  99999999998765334777776654    7899999999


Q ss_pred             cCCCCCCcc
Q 024975          162 NGHFSVPRL  170 (259)
Q Consensus       162 tG~~s~~~~  170 (259)
                      +|  ..|+.
T Consensus       261 ~G--~~p~~  267 (450)
T 1ges_A          261 IG--REPAN  267 (450)
T ss_dssp             SC--EEESC
T ss_pred             CC--CCcCC
Confidence            99  45554

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.07  E-value=2.1e-09  Score=89.21  Aligned_cols=103  Identities=19%  Similarity=0.261  Sum_probs=80.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++++|||+|+.|+.+|..|.+.|.+|+++|+.+.+.                                           
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------------  206 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL-------------------------------------------  206 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc-------------------------------------------
Confidence            4689999999999999999999999999999975331                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +             .+.  .++.+.+.+.+++.|++  ++.+++|+++...+ +.+.+.+.. ++....+.+|.||+|
T Consensus       207 --~-------------~~~--~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~-~g~~~~~~~D~vv~a  265 (455)
T 1ebd_A          207 --S-------------GFE--KQMAAIIKKRLKKKGVE--VVTNALAKGAEERE-DGVTVTYEA-NGETKTIDADYVLVT  265 (455)
T ss_dssp             --T-------------TSC--HHHHHHHHHHHHHTTCE--EEESEEEEEEEEET-TEEEEEEEE-TTEEEEEEESEEEEC
T ss_pred             --c-------------ccC--HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeC-CeEEEEEEe-CCceeEEEcCEEEEC
Confidence              0             000  67778888888889999  99999999998765 456666652 112247899999999


Q ss_pred             cCCCCCCcc
Q 024975          162 NGHFSVPRL  170 (259)
Q Consensus       162 tG~~s~~~~  170 (259)
                      +|  ..|+.
T Consensus       266 ~G--~~p~~  272 (455)
T 1ebd_A          266 VG--RRPNT  272 (455)
T ss_dssp             SC--EEESC
T ss_pred             cC--CCccc
Confidence            99  45554

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.07  E-value=8.2e-11  Score=98.26  Aligned_cols=41  Identities=37%  Similarity=0.568  Sum_probs=37.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~   42 (259)
                      .+||+|||||++||++|..|.+.|.+|+|+|+++.+||.+.
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~   56 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVG   56 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceee
Confidence            47999999999999999999999999999999999987653

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.05  E-value=1.2e-09  Score=90.49  Aligned_cols=101  Identities=23%  Similarity=0.220  Sum_probs=77.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++++|||+|+.|+.+|..|.+.|.+|+++|+.+.+...                                         
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  187 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV-----------------------------------------  187 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc-----------------------------------------
Confidence            478999999999999999999999999999997533100                                         


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                                      .+.  .++.+.+.+.+++.|++  ++++++|+++...+ ..+.+.++ +    ..+.+|.||+|
T Consensus       188 ----------------~~~--~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~v~~v~~~-~----~~i~~d~vi~a  241 (447)
T 1nhp_A          188 ----------------YLD--KEFTDVLTEEMEANNIT--IATGETVERYEGDG-RVQKVVTD-K----NAYDADLVVVA  241 (447)
T ss_dssp             ----------------TCC--HHHHHHHHHHHHTTTEE--EEESCCEEEEECSS-BCCEEEES-S----CEEECSEEEEC
T ss_pred             ----------------cCC--HHHHHHHHHHHHhCCCE--EEcCCEEEEEEccC-cEEEEEEC-C----CEEECCEEEEC
Confidence                            000  67778888888888999  99999999998642 33445553 2    27899999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+.+
T Consensus       242 ~G--~~p~~~  249 (447)
T 1nhp_A          242 VG--VRPNTA  249 (447)
T ss_dssp             SC--EEESCG
T ss_pred             cC--CCCChH
Confidence            99  455543

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.04  E-value=2.6e-09  Score=89.17  Aligned_cols=106  Identities=27%  Similarity=0.414  Sum_probs=81.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+..                                          
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  220 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA------------------------------------------  220 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS------------------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc------------------------------------------
Confidence            36899999999999999999999999999999764311                                          


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEe-CCCcEEEEEEec-CCceEEEEeCEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV-ESNKWKVKSRKK-DDVVEEETFDAVV  159 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~-~~~~~~v~~~~g-~~~~~~~~ad~VI  159 (259)
                                      .+.  .++..++.+.+++.|++  ++.+++|+++... +++.+.+.+.+. ++....+.+|.||
T Consensus       221 ----------------~~~--~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv  280 (478)
T 1v59_A          221 ----------------SMD--GEVAKATQKFLKKQGLD--FKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLL  280 (478)
T ss_dssp             ----------------SSC--HHHHHHHHHHHHHTTCE--EECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEE
T ss_pred             ----------------ccC--HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEE
Confidence                            000  67778888888889999  9999999999873 225566776521 1122478999999


Q ss_pred             EccCCCCCCccC
Q 024975          160 VCNGHFSVPRLA  171 (259)
Q Consensus       160 lAtG~~s~~~~~  171 (259)
                      +|+|  ..|+..
T Consensus       281 ~a~G--~~p~~~  290 (478)
T 1v59_A          281 VAVG--RRPYIA  290 (478)
T ss_dssp             ECSC--EEECCT
T ss_pred             ECCC--CCcCCC
Confidence            9999  455543

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.03  E-value=3.7e-09  Score=88.72  Aligned_cols=101  Identities=18%  Similarity=0.399  Sum_probs=80.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+-+|..|.+.|.+|+++++.+.+.                                            
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l--------------------------------------------  212 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL--------------------------------------------  212 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC--------------------------------------------
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccC--------------------------------------------
Confidence            589999999999999999999999999999975431                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                       +             .+.  .++...+.+.+++.|++  ++.+++|++++..+++.+.+.+.+|.   ..+.+|.||+|+
T Consensus       213 -~-------------~~d--~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~v~~~~g~---~~~~~D~vi~a~  271 (500)
T 1onf_A          213 -R-------------KFD--ESVINVLENDMKKNNIN--IVTFADVVEIKKVSDKNLSIHLSDGR---IYEHFDHVIYCV  271 (500)
T ss_dssp             -T-------------TSC--HHHHHHHHHHHHHTTCE--EECSCCEEEEEESSTTCEEEEETTSC---EEEEESEEEECC
T ss_pred             -c-------------ccc--hhhHHHHHHHHHhCCCE--EEECCEEEEEEEcCCceEEEEECCCc---EEEECCEEEECC
Confidence             0             000  67778888888899999  99999999998764344677776654   138999999999


Q ss_pred             CCCCCCcc
Q 024975          163 GHFSVPRL  170 (259)
Q Consensus       163 G~~s~~~~  170 (259)
                      |  ..|+.
T Consensus       272 G--~~p~~  277 (500)
T 1onf_A          272 G--RSPDT  277 (500)
T ss_dssp             C--BCCTT
T ss_pred             C--CCcCC
Confidence            9  45554

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.02  E-value=6.6e-09  Score=86.98  Aligned_cols=104  Identities=26%  Similarity=0.318  Sum_probs=80.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+...                                         
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  212 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL-----------------------------------------  212 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-----------------------------------------
Confidence            368999999999999999999999999999997643100                                         


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                                       +.  .++.+.+.+.+++. ++  ++.+++|.+++..+ +...+.+.+.+++...+.+|.||+|
T Consensus       213 -----------------~d--~~~~~~l~~~l~~~-V~--i~~~~~v~~i~~~~-~~v~v~~~~~~G~~~~i~~D~Vi~a  269 (492)
T 3ic9_A          213 -----------------QD--EEMKRYAEKTFNEE-FY--FDAKARVISTIEKE-DAVEVIYFDKSGQKTTESFQYVLAA  269 (492)
T ss_dssp             -----------------CC--HHHHHHHHHHHHTT-SE--EETTCEEEEEEECS-SSEEEEEECTTCCEEEEEESEEEEC
T ss_pred             -----------------CC--HHHHHHHHHHHhhC-cE--EEECCEEEEEEEcC-CEEEEEEEeCCCceEEEECCEEEEe
Confidence                             00  66777777777766 88  99999999998876 5677777633343457999999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       270 ~G--~~p~~~  277 (492)
T 3ic9_A          270 TG--RKANVD  277 (492)
T ss_dssp             SC--CEESCS
T ss_pred             eC--CccCCC
Confidence            99  555543

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.01  E-value=3.7e-09  Score=86.67  Aligned_cols=101  Identities=26%  Similarity=0.238  Sum_probs=81.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                           
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l-------------------------------------------  188 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVL-------------------------------------------  188 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchh-------------------------------------------
Confidence            4689999999999999999999999999999975331                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +            ..++  ..+.+++.+.+++.|++  ++++++|+++...++....|.+.++.    .+.+|.||+|
T Consensus       189 --~------------~~~~--~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~v~~v~l~dG~----~i~aD~Vv~a  246 (415)
T 3lxd_A          189 --A------------RVAG--EALSEFYQAEHRAHGVD--LRTGAAMDCIEGDGTKVTGVRMQDGS----VIPADIVIVG  246 (415)
T ss_dssp             --T------------TTSC--HHHHHHHHHHHHHTTCE--EEETCCEEEEEESSSBEEEEEESSSC----EEECSEEEEC
T ss_pred             --h------------hhcC--HHHHHHHHHHHHhCCCE--EEECCEEEEEEecCCcEEEEEeCCCC----EEEcCEEEEC
Confidence              0            0011  77888889999999999  99999999998765233467777765    7999999999


Q ss_pred             cCCCCCCc
Q 024975          162 NGHFSVPR  169 (259)
Q Consensus       162 tG~~s~~~  169 (259)
                      +|  ..|+
T Consensus       247 ~G--~~p~  252 (415)
T 3lxd_A          247 IG--IVPC  252 (415)
T ss_dssp             SC--CEES
T ss_pred             CC--CccC
Confidence            99  4454

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.01  E-value=7.1e-09  Score=86.33  Aligned_cols=104  Identities=24%  Similarity=0.280  Sum_probs=80.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+-+|..|.+.|.+|+++++.+.+.                                           
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------------  210 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCA-------------------------------------------  210 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccc-------------------------------------------
Confidence            3689999999999999999999999999999975331                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHH-HHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFA-REFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                        +             .+.  .++.+.+.+.+ ++.|++  ++.+++|++++..+ +.+.+.+.+.+++...+.+|.||+
T Consensus       211 --~-------------~~d--~~~~~~l~~~l~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~~~g~~~~i~~D~vv~  270 (468)
T 2qae_A          211 --P-------------TLD--EDVTNALVGALAKNEKMK--FMTSTKVVGGTNNG-DSVSLEVEGKNGKRETVTCEALLV  270 (468)
T ss_dssp             --T-------------TSC--HHHHHHHHHHHHHHTCCE--EECSCEEEEEEECS-SSEEEEEECC---EEEEEESEEEE
T ss_pred             --c-------------cCC--HHHHHHHHHHHhhcCCcE--EEeCCEEEEEEEcC-CeEEEEEEcCCCceEEEECCEEEE
Confidence              0             000  66778888888 889999  99999999998765 457777652122234789999999


Q ss_pred             ccCCCCCCcc
Q 024975          161 CNGHFSVPRL  170 (259)
Q Consensus       161 AtG~~s~~~~  170 (259)
                      |+|  ..|+.
T Consensus       271 a~G--~~p~~  278 (468)
T 2qae_A          271 SVG--RRPFT  278 (468)
T ss_dssp             CSC--EEECC
T ss_pred             CCC--cccCC
Confidence            999  45544

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.01  E-value=8e-09  Score=86.53  Aligned_cols=105  Identities=25%  Similarity=0.295  Sum_probs=82.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+..                                          
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  235 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG------------------------------------------  235 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc------------------------------------------
Confidence            36899999999999999999999999999998753310                                          


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIl  160 (259)
                                      .+.  .++.+.+.+.+.+.+++  ++.+++|.++...+ +.+.+.+.+.+ ++...+.+|.||+
T Consensus       236 ----------------~~d--~~~~~~l~~~l~~~gV~--v~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~Vi~  294 (491)
T 3urh_A          236 ----------------GMD--GEVAKQLQRMLTKQGID--FKLGAKVTGAVKSG-DGAKVTFEPVKGGEATTLDAEVVLI  294 (491)
T ss_dssp             ----------------SSC--HHHHHHHHHHHHHTTCE--EECSEEEEEEEEET-TEEEEEEEETTSCCCEEEEESEEEE
T ss_pred             ----------------cCC--HHHHHHHHHHHHhCCCE--EEECCeEEEEEEeC-CEEEEEEEecCCCceEEEEcCEEEE
Confidence                            000  67778888888889999  99999999999876 66777777532 3335799999999


Q ss_pred             ccCCCCCCccC
Q 024975          161 CNGHFSVPRLA  171 (259)
Q Consensus       161 AtG~~s~~~~~  171 (259)
                      |+|  ..|+..
T Consensus       295 a~G--~~p~~~  303 (491)
T 3urh_A          295 ATG--RKPSTD  303 (491)
T ss_dssp             CCC--CEECCT
T ss_pred             eeC--CccCCC
Confidence            999  555543

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.00  E-value=1.3e-09  Score=95.52  Aligned_cols=40  Identities=38%  Similarity=0.589  Sum_probs=36.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCcee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW   41 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~   41 (259)
                      .+||+|||||++|+++|..|.+.|.+|+|+|+.+.+||..
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri  375 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRV  375 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceecee
Confidence            3799999999999999999999999999999998888743

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.99  E-value=4.8e-09  Score=87.15  Aligned_cols=101  Identities=21%  Similarity=0.230  Sum_probs=79.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                           
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l-------------------------------------------  202 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLL-------------------------------------------  202 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccc-------------------------------------------
Confidence            3689999999999999999999999999999975331                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +             .+.  .++...+.+.+++.+++  ++.+++|++++..+ +.+.+.+.+|.  . .+.+|.||+|
T Consensus       203 --~-------------~~~--~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~G~--~-~i~~D~vv~a  259 (463)
T 2r9z_A          203 --F-------------QFD--PLLSATLAENMHAQGIE--THLEFAVAALERDA-QGTTLVAQDGT--R-LEGFDSVIWA  259 (463)
T ss_dssp             --T-------------TSC--HHHHHHHHHHHHHTTCE--EESSCCEEEEEEET-TEEEEEETTCC--E-EEEESEEEEC
T ss_pred             --c-------------ccC--HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeC-CeEEEEEeCCc--E-EEEcCEEEEC
Confidence              0             000  56677788888888999  99999999998765 44667765432  1 6899999999


Q ss_pred             cCCCCCCcc
Q 024975          162 NGHFSVPRL  170 (259)
Q Consensus       162 tG~~s~~~~  170 (259)
                      +|  ..|+.
T Consensus       260 ~G--~~p~~  266 (463)
T 2r9z_A          260 VG--RAPNT  266 (463)
T ss_dssp             SC--EEESC
T ss_pred             CC--CCcCC
Confidence            99  45554

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.99  E-value=4.5e-09  Score=87.95  Aligned_cols=101  Identities=20%  Similarity=0.274  Sum_probs=81.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~---g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (259)
                      ..+++|||+|+.|+-+|..|.+.   |.+|+++++.+.+.                                        
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l----------------------------------------  226 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL----------------------------------------  226 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc----------------------------------------
Confidence            36899999999999999999999   99999999976331                                        


Q ss_pred             eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                           +             .+.  .++.+.+.+.+++.|++  ++++++|+++...+++.+.|.+.++.    .+.+|.|
T Consensus       227 -----~-------------~~d--~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~~v~~~~G~----~i~~D~v  280 (490)
T 1fec_A          227 -----R-------------GFD--SELRKQLTEQLRANGIN--VRTHENPAKVTKNADGTRHVVFESGA----EADYDVV  280 (490)
T ss_dssp             -----T-------------TSC--HHHHHHHHHHHHHTTEE--EEETCCEEEEEECTTSCEEEEETTSC----EEEESEE
T ss_pred             -----c-------------ccC--HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCEEEEEECCCc----EEEcCEE
Confidence                 0             000  67778888888889999  99999999998765345777776654    7999999


Q ss_pred             EEccCCCCCCcc
Q 024975          159 VVCNGHFSVPRL  170 (259)
Q Consensus       159 IlAtG~~s~~~~  170 (259)
                      |+|+|  ..|+.
T Consensus       281 v~a~G--~~p~~  290 (490)
T 1fec_A          281 MLAIG--RVPRS  290 (490)
T ss_dssp             EECSC--EEESC
T ss_pred             EEccC--CCcCc
Confidence            99999  45554

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.99  E-value=2.3e-09  Score=87.73  Aligned_cols=97  Identities=21%  Similarity=0.291  Sum_probs=79.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+....                                        
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~----------------------------------------  182 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRV----------------------------------------  182 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHH----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhh----------------------------------------
Confidence            3689999999999999999999999999999975431000                                        


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                                       ++  .++.+.+.+.+++.|++  ++++++|.++...+ ....|.+.++.    .+.+|.||+|
T Consensus       183 -----------------~~--~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~~~~v~~~dg~----~i~aD~Vv~a  236 (410)
T 3ef6_A          183 -----------------LG--RRIGAWLRGLLTELGVQ--VELGTGVVGFSGEG-QLEQVMASDGR----SFVADSALIC  236 (410)
T ss_dssp             -----------------HC--HHHHHHHHHHHHHHTCE--EECSCCEEEEECSS-SCCEEEETTSC----EEECSEEEEC
T ss_pred             -----------------cC--HHHHHHHHHHHHHCCCE--EEeCCEEEEEeccC-cEEEEEECCCC----EEEcCEEEEe
Confidence                             00  67778888888889999  99999999998654 55678887765    7999999999


Q ss_pred             cCC
Q 024975          162 NGH  164 (259)
Q Consensus       162 tG~  164 (259)
                      +|.
T Consensus       237 ~G~  239 (410)
T 3ef6_A          237 VGA  239 (410)
T ss_dssp             SCE
T ss_pred             eCC
Confidence            994

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.99  E-value=7.1e-11  Score=94.71  Aligned_cols=35  Identities=29%  Similarity=0.307  Sum_probs=32.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcC------CcEEEEeeCCCc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREG------HTVVVYEKGEQV   37 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g------~~v~v~e~~~~~   37 (259)
                      +||+|||||++|+++|++|+++|      .+|+|+|+....
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~   41 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTP   41 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGG
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCC
Confidence            49999999999999999999998      899999998643

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.99  E-value=3.2e-09  Score=86.71  Aligned_cols=97  Identities=25%  Similarity=0.245  Sum_probs=78.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                            
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~--------------------------------------------  178 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM--------------------------------------------  178 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT--------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcch--------------------------------------------
Confidence            579999999999999999999999999999975331                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                       +            ..++  .++.+.+.+.+++.|++  ++.+++|.++...++....|.+.+|.    .+.+|.||+|+
T Consensus       179 -~------------~~~~--~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~v~~V~~~dG~----~i~aD~Vv~a~  237 (404)
T 3fg2_P          179 -A------------RVVT--PEISSYFHDRHSGAGIR--MHYGVRATEIAAEGDRVTGVVLSDGN----TLPCDLVVVGV  237 (404)
T ss_dssp             -T------------TTSC--HHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEETTSC----EEECSEEEECC
T ss_pred             -h------------hccC--HHHHHHHHHHHHhCCcE--EEECCEEEEEEecCCcEEEEEeCCCC----EEEcCEEEECc
Confidence             0            0011  67788888888899999  99999999998765333457777665    79999999999


Q ss_pred             CC
Q 024975          163 GH  164 (259)
Q Consensus       163 G~  164 (259)
                      |.
T Consensus       238 G~  239 (404)
T 3fg2_P          238 GV  239 (404)
T ss_dssp             CE
T ss_pred             CC
Confidence            94

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.98  E-value=5.2e-09  Score=87.68  Aligned_cols=101  Identities=15%  Similarity=0.193  Sum_probs=80.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~---g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (259)
                      ..+++|||+|+.|+-+|..|.+.   |.+|+++++.+.+.                                        
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l----------------------------------------  230 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL----------------------------------------  230 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSC----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccc----------------------------------------
Confidence            36899999999999999999999   99999999975330                                        


Q ss_pred             eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                           +             .+.  .++...+.+.+++.|++  ++++++|+++...+++.+.|.+.+|.    .+.+|.|
T Consensus       231 -----~-------------~~d--~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~~v~~~~G~----~i~~D~v  284 (495)
T 2wpf_A          231 -----R-------------GFD--ETIREEVTKQLTANGIE--IMTNENPAKVSLNTDGSKHVTFESGK----TLDVDVV  284 (495)
T ss_dssp             -----T-------------TSC--HHHHHHHHHHHHHTTCE--EEESCCEEEEEECTTSCEEEEETTSC----EEEESEE
T ss_pred             -----c-------------ccC--HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCceEEEEECCCc----EEEcCEE
Confidence                 0             000  67778888888889999  99999999998765345777776654    7999999


Q ss_pred             EEccCCCCCCcc
Q 024975          159 VVCNGHFSVPRL  170 (259)
Q Consensus       159 IlAtG~~s~~~~  170 (259)
                      |+|+|  ..|+.
T Consensus       285 v~a~G--~~p~~  294 (495)
T 2wpf_A          285 MMAIG--RIPRT  294 (495)
T ss_dssp             EECSC--EEECC
T ss_pred             EECCC--Ccccc
Confidence            99999  45554

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.97  E-value=1e-08  Score=85.58  Aligned_cols=103  Identities=26%  Similarity=0.362  Sum_probs=82.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+-+|..|.+.|.+|+++++.+.+.                                           
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------------  216 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL-------------------------------------------  216 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-------------------------------------------
Confidence            3689999999999999999999999999999975331                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +             .+.  .++...+.+.+++.|++  ++.+++|++++..+ +...+.+.++++ ...+.+|.||+|
T Consensus       217 --~-------------~~~--~~~~~~l~~~l~~~Gv~--v~~~~~v~~i~~~~-~~~~v~~~~~~g-~~~~~~D~vi~a  275 (476)
T 3lad_A          217 --P-------------AVD--EQVAKEAQKILTKQGLK--ILLGARVTGTEVKN-KQVTVKFVDAEG-EKSQAFDKLIVA  275 (476)
T ss_dssp             --T-------------TSC--HHHHHHHHHHHHHTTEE--EEETCEEEEEEECS-SCEEEEEESSSE-EEEEEESEEEEC
T ss_pred             --c-------------ccC--HHHHHHHHHHHHhCCCE--EEECCEEEEEEEcC-CEEEEEEEeCCC-cEEEECCEEEEe
Confidence              0             000  67778888888889999  99999999998875 667777776543 357899999999


Q ss_pred             cCCCCCCcc
Q 024975          162 NGHFSVPRL  170 (259)
Q Consensus       162 tG~~s~~~~  170 (259)
                      +|  ..|+.
T Consensus       276 ~G--~~p~~  282 (476)
T 3lad_A          276 VG--RRPVT  282 (476)
T ss_dssp             SC--EEECC
T ss_pred             eC--CcccC
Confidence            99  45554

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.97  E-value=5.2e-09  Score=87.20  Aligned_cols=104  Identities=25%  Similarity=0.309  Sum_probs=80.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                           
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------------------  213 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV-------------------------------------------  213 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc-------------------------------------------
Confidence            3689999999999999999999999999999975331                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIl  160 (259)
                        +             .+.  .++.+++.+.+++.|++  ++.+++|.++...+ +.+.+.+.+. ++....+.+|.||+
T Consensus       214 --~-------------~~~--~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~~~~D~vv~  273 (470)
T 1dxl_A          214 --P-------------TMD--AEIRKQFQRSLEKQGMK--FKLKTKVVGVDTSG-DGVKLTVEPSAGGEQTIIEADVVLV  273 (470)
T ss_dssp             --T-------------TSC--HHHHHHHHHHHHHSSCC--EECSEEEEEEECSS-SSEEEEEEESSSCCCEEEEESEEEC
T ss_pred             --c-------------ccc--HHHHHHHHHHHHHcCCE--EEeCCEEEEEEEcC-CeEEEEEEecCCCcceEEECCEEEE
Confidence              0             000  67778888888889999  99999999998654 4567776531 12224789999999


Q ss_pred             ccCCCCCCcc
Q 024975          161 CNGHFSVPRL  170 (259)
Q Consensus       161 AtG~~s~~~~  170 (259)
                      |+|  ..|+.
T Consensus       274 a~G--~~p~~  281 (470)
T 1dxl_A          274 SAG--RTPFT  281 (470)
T ss_dssp             CCC--EEECC
T ss_pred             CCC--CCcCC
Confidence            999  45544

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.97  E-value=3e-09  Score=88.88  Aligned_cols=104  Identities=19%  Similarity=0.206  Sum_probs=79.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+|+|+.+.+.                                           
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------------------  221 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM-------------------------------------------  221 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc-------------------------------------------
Confidence            3689999999999999999999999999999975431                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +             .+.  .++.+.+.+.+++.+++  ++.+++|.+++..+ +...+.+.+..+....+.+|.||+|
T Consensus       222 --~-------------~~~--~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~~~~~g~~~~~D~vv~a  281 (482)
T 1ojt_A          222 --Q-------------GAD--RDLVKVWQKQNEYRFDN--IMVNTKTVAVEPKE-DGVYVTFEGANAPKEPQRYDAVLVA  281 (482)
T ss_dssp             --T-------------TSC--HHHHHHHHHHHGGGEEE--EECSCEEEEEEEET-TEEEEEEESSSCCSSCEEESCEEEC
T ss_pred             --c-------------ccC--HHHHHHHHHHHHhcCCE--EEECCEEEEEEEcC-CeEEEEEeccCCCceEEEcCEEEEC
Confidence              0             000  67778888888888999  99999999998765 5567777650000025789999999


Q ss_pred             cCCCCCCcc
Q 024975          162 NGHFSVPRL  170 (259)
Q Consensus       162 tG~~s~~~~  170 (259)
                      +|  ..|+.
T Consensus       282 ~G--~~p~~  288 (482)
T 1ojt_A          282 AG--RAPNG  288 (482)
T ss_dssp             CC--EEECG
T ss_pred             cC--CCcCC
Confidence            99  45554

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.97  E-value=1.4e-08  Score=84.69  Aligned_cols=106  Identities=28%  Similarity=0.352  Sum_probs=80.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++|+.+.+...                                         
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  216 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV-----------------------------------------  216 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS-----------------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc-----------------------------------------
Confidence            368999999999999999999999999999997533100                                         


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIl  160 (259)
                                      .+.  .++..++.+.+++.|++  ++.+++|+++...+++.+.+.+.+. .+....+.+|.||+
T Consensus       217 ----------------~~~--~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~  276 (474)
T 1zmd_A          217 ----------------GID--MEISKNFQRILQKQGFK--FKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLV  276 (474)
T ss_dssp             ----------------SCC--HHHHHHHHHHHHHTTCE--EECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEE
T ss_pred             ----------------ccC--HHHHHHHHHHHHHCCCE--EEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEE
Confidence                            001  67778888888889999  9999999999876522266765421 11124789999999


Q ss_pred             ccCCCCCCcc
Q 024975          161 CNGHFSVPRL  170 (259)
Q Consensus       161 AtG~~s~~~~  170 (259)
                      |+|  ..|+.
T Consensus       277 a~G--~~p~~  284 (474)
T 1zmd_A          277 CIG--RRPFT  284 (474)
T ss_dssp             CSC--EEECC
T ss_pred             CcC--CCcCC
Confidence            999  45554

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.96  E-value=8.7e-09  Score=85.68  Aligned_cols=102  Identities=22%  Similarity=0.246  Sum_probs=80.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+-+|..|.+.|.+|+++++.+.+.                                           
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------------  207 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRAL-------------------------------------------  207 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------------------
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------------------
Confidence            3689999999999999999999999999999975331                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEE-ecCCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR-KKDDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~-~g~~~~~~~~ad~VIl  160 (259)
                        +             .+.  .++.+++.+.+++.|++  ++.+++|+++...+ +...+.+. ++  ....+.+|.||+
T Consensus       208 --~-------------~~~--~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~~g--~~~~~~~D~vv~  265 (464)
T 2a8x_A          208 --P-------------NED--ADVSKEIEKQFKKLGVT--ILTATKVESIADGG-SQVTVTVTKDG--VAQELKAEKVLQ  265 (464)
T ss_dssp             --T-------------TSC--HHHHHHHHHHHHHHTCE--EECSCEEEEEEECS-SCEEEEEESSS--CEEEEEESEEEE
T ss_pred             --c-------------ccC--HHHHHHHHHHHHHcCCE--EEeCcEEEEEEEcC-CeEEEEEEcCC--ceEEEEcCEEEE
Confidence              0             001  67778888888889999  99999999998765 45666665 33  234789999999


Q ss_pred             ccCCCCCCcc
Q 024975          161 CNGHFSVPRL  170 (259)
Q Consensus       161 AtG~~s~~~~  170 (259)
                      |+|  ..|+.
T Consensus       266 a~G--~~p~~  273 (464)
T 2a8x_A          266 AIG--FAPNV  273 (464)
T ss_dssp             CSC--EEECC
T ss_pred             CCC--CCccC
Confidence            999  45554

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.96  E-value=5.4e-09  Score=86.08  Aligned_cols=98  Identities=23%  Similarity=0.286  Sum_probs=77.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                           
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------------------  185 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL-------------------------------------------  185 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccc-------------------------------------------
Confidence            3689999999999999999999999999999865320                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEE--eCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL--VESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~--~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                        +            ..++  .++...+.+.+++.|++  ++.+++|+++..  .++....|.+.+|.    .+.+|.||
T Consensus       186 --~------------~~~~--~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~v~~v~~~~G~----~i~~D~Vv  243 (431)
T 1q1r_A          186 --E------------RVTA--PPVSAFYEHLHREAGVD--IRTGTQVCGFEMSTDQQKVTAVLCEDGT----RLPADLVI  243 (431)
T ss_dssp             --T------------TTSC--HHHHHHHHHHHHHHTCE--EECSCCEEEEEECTTTCCEEEEEETTSC----EEECSEEE
T ss_pred             --c------------chhh--HHHHHHHHHHHHhCCeE--EEeCCEEEEEEeccCCCcEEEEEeCCCC----EEEcCEEE
Confidence              0            0011  66777888888889999  999999999987  33233367776654    78999999


Q ss_pred             EccCC
Q 024975          160 VCNGH  164 (259)
Q Consensus       160 lAtG~  164 (259)
                      +|+|.
T Consensus       244 ~a~G~  248 (431)
T 1q1r_A          244 AGIGL  248 (431)
T ss_dssp             ECCCE
T ss_pred             ECCCC
Confidence            99994

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.96  E-value=5.3e-09  Score=87.31  Aligned_cols=102  Identities=18%  Similarity=0.270  Sum_probs=80.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+-+|..|.+.|.+|+++++.+.+.                                           
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------------  221 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL-------------------------------------------  221 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccc-------------------------------------------
Confidence            3689999999999999999999999999999975431                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC-cEEEEEEecCCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                        +             .+.  .++.+.+.+.+++.|++  ++.+++|++++..+++ ...+.+.+|.   ..+.+|.||+
T Consensus       222 --~-------------~~d--~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~~v~~~~G~---~~i~~D~vv~  279 (479)
T 2hqm_A          222 --R-------------KFD--ECIQNTITDHYVKEGIN--VHKLSKIVKVEKNVETDKLKIHMNDSK---SIDDVDELIW  279 (479)
T ss_dssp             --T-------------TSC--HHHHHHHHHHHHHHTCE--EECSCCEEEEEECC-CCCEEEEETTSC---EEEEESEEEE
T ss_pred             --c-------------ccC--HHHHHHHHHHHHhCCeE--EEeCCEEEEEEEcCCCcEEEEEECCCc---EEEEcCEEEE
Confidence              0             000  67778888888889999  9999999999875422 3667776542   3799999999


Q ss_pred             ccCCCCCCcc
Q 024975          161 CNGHFSVPRL  170 (259)
Q Consensus       161 AtG~~s~~~~  170 (259)
                      |+|  ..|+.
T Consensus       280 a~G--~~p~~  287 (479)
T 2hqm_A          280 TIG--RKSHL  287 (479)
T ss_dssp             CSC--EEECC
T ss_pred             CCC--CCCcc
Confidence            999  45554

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.95  E-value=3.4e-10  Score=95.28  Aligned_cols=41  Identities=32%  Similarity=0.400  Sum_probs=38.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc-CCcEEEEeeCCCcCceee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~-g~~v~v~e~~~~~gg~~~   42 (259)
                      .+||+|||||++||+||++|+++ |.+|+|+|+++.+||.+.
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~   51 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLAS   51 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGC
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCee
Confidence            47999999999999999999985 999999999999999764

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.95  E-value=2.3e-09  Score=88.93  Aligned_cols=101  Identities=25%  Similarity=0.307  Sum_probs=77.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+|+|+.+.+.                                           
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------------  207 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL-------------------------------------------  207 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------------------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccc-------------------------------------------
Confidence            3689999999999999999999999999999976431                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +             .+.  .++.+++.+.+.+.+++  ++.+++|++++. + + +.+...+|  +...+.+|.||+|
T Consensus       208 --~-------------~~~--~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~-~-~-v~v~~~~G--~~~~i~~D~vv~a  263 (458)
T 1lvl_A          208 --P-------------TYD--SELTAPVAESLKKLGIA--LHLGHSVEGYEN-G-C-LLANDGKG--GQLRLEADRVLVA  263 (458)
T ss_dssp             --T-------------TSC--HHHHHHHHHHHHHHTCE--EETTCEEEEEET-T-E-EEEECSSS--CCCEECCSCEEEC
T ss_pred             --c-------------ccC--HHHHHHHHHHHHHCCCE--EEECCEEEEEEe-C-C-EEEEECCC--ceEEEECCEEEEC
Confidence              0             000  66777888888888999  999999999975 3 3 44442122  2247899999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+.+
T Consensus       264 ~G--~~p~~~  271 (458)
T 1lvl_A          264 VG--RRPRTK  271 (458)
T ss_dssp             CC--EEECCS
T ss_pred             cC--CCcCCC
Confidence            99  556554

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.94  E-value=7.4e-09  Score=84.65  Aligned_cols=93  Identities=22%  Similarity=0.312  Sum_probs=75.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+..                                          
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  182 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS------------------------------------------  182 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc------------------------------------------
Confidence            36899999999999999999999999999999753310                                          


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                                     ..++  .++...+.+.+++.|++  ++.+++|+++.  + +  .|.+.++.    .+.+|.||+|
T Consensus       183 ---------------~~~~--~~~~~~l~~~l~~~GV~--i~~~~~v~~i~--~-~--~v~~~~g~----~i~~D~vi~a  234 (408)
T 2gqw_A          183 ---------------RAAP--ATLADFVARYHAAQGVD--LRFERSVTGSV--D-G--VVLLDDGT----RIAADMVVVG  234 (408)
T ss_dssp             ---------------TTSC--HHHHHHHHHHHHHTTCE--EEESCCEEEEE--T-T--EEEETTSC----EEECSEEEEC
T ss_pred             ---------------cccC--HHHHHHHHHHHHHcCcE--EEeCCEEEEEE--C-C--EEEECCCC----EEEcCEEEEC
Confidence                           0011  67778888888889999  99999999998  3 3  56666554    7999999999


Q ss_pred             cCC
Q 024975          162 NGH  164 (259)
Q Consensus       162 tG~  164 (259)
                      +|.
T Consensus       235 ~G~  237 (408)
T 2gqw_A          235 IGV  237 (408)
T ss_dssp             SCE
T ss_pred             cCC
Confidence            994

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.93  E-value=9.1e-09  Score=86.34  Aligned_cols=100  Identities=19%  Similarity=0.159  Sum_probs=79.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                           
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------------  218 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVL-------------------------------------------  218 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSS-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------------------
Confidence            3679999999999999999999999999999975431                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +             .+.  .++.+.+.+.+++.|++  ++.+++|+++...+ +.+.+.+.++.    .+.+|.||+|
T Consensus       219 --~-------------~~d--~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~-~~v~v~~~~g~----~i~aD~Vv~a  274 (499)
T 1xdi_A          219 --P-------------YED--ADAALVLEESFAERGVR--LFKNARAASVTRTG-AGVLVTMTDGR----TVEGSHALMT  274 (499)
T ss_dssp             --C-------------CSS--HHHHHHHHHHHHHTTCE--EETTCCEEEEEECS-SSEEEEETTSC----EEEESEEEEC
T ss_pred             --c-------------ccC--HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeC-CEEEEEECCCc----EEEcCEEEEC
Confidence              0             001  67788888888899999  99999999998765 45666654443    7999999999


Q ss_pred             cCCCCCCcc
Q 024975          162 NGHFSVPRL  170 (259)
Q Consensus       162 tG~~s~~~~  170 (259)
                      +|  ..|+.
T Consensus       275 ~G--~~p~~  281 (499)
T 1xdi_A          275 IG--SVPNT  281 (499)
T ss_dssp             CC--EEECC
T ss_pred             CC--CCcCC
Confidence            99  45544

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.93  E-value=1.9e-08  Score=83.37  Aligned_cols=101  Identities=26%  Similarity=0.312  Sum_probs=79.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                           
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------------  183 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLL-------------------------------------------  183 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccc-------------------------------------------
Confidence            3689999999999999999999999999999975331                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +            ..+.  .++.+.+.+.+++.|++  ++.+++|++++..+ +.+.|.++++     .+.+|.||+|
T Consensus       184 --~------------~~~d--~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~~v~v~~~~g-----~i~aD~Vv~A  239 (452)
T 3oc4_A          184 --P------------KYFD--KEMVAEVQKSLEKQAVI--FHFEETVLGIEETA-NGIVLETSEQ-----EISCDSGIFA  239 (452)
T ss_dssp             --T------------TTCC--HHHHHHHHHHHHTTTEE--EEETCCEEEEEECS-SCEEEEESSC-----EEEESEEEEC
T ss_pred             --c------------ccCC--HHHHHHHHHHHHHcCCE--EEeCCEEEEEEccC-CeEEEEECCC-----EEEeCEEEEC
Confidence              0            0011  67888888888889999  99999999998765 5556666432     6899999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       240 ~G--~~p~~~  247 (452)
T 3oc4_A          240 LN--LHPQLA  247 (452)
T ss_dssp             SC--CBCCCS
T ss_pred             cC--CCCChH
Confidence            99  555544

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.93  E-value=1.1e-08  Score=85.52  Aligned_cols=100  Identities=16%  Similarity=0.287  Sum_probs=81.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                           
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------------------  227 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL-------------------------------------------  227 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------------------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccc-------------------------------------------
Confidence            4689999999999999999999999999999875321                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +             .+.  .++...+.+.+++.|++  ++.+++|++++..+ +.+.+.+.++.    .+.+|.||+|
T Consensus       228 --~-------------~~~--~~~~~~l~~~l~~~Gv~--i~~~~~V~~i~~~~-~~v~v~~~~g~----~i~aD~Vi~A  283 (484)
T 3o0h_A          228 --R-------------NFD--YDLRQLLNDAMVAKGIS--IIYEATVSQVQSTE-NCYNVVLTNGQ----TICADRVMLA  283 (484)
T ss_dssp             --T-------------TSC--HHHHHHHHHHHHHHTCE--EESSCCEEEEEECS-SSEEEEETTSC----EEEESEEEEC
T ss_pred             --c-------------ccC--HHHHHHHHHHHHHCCCE--EEeCCEEEEEEeeC-CEEEEEECCCc----EEEcCEEEEe
Confidence              0             000  66778888888889999  99999999998875 56778877654    7999999999


Q ss_pred             cCCCCCCcc
Q 024975          162 NGHFSVPRL  170 (259)
Q Consensus       162 tG~~s~~~~  170 (259)
                      +|  ..|+.
T Consensus       284 ~G--~~p~~  290 (484)
T 3o0h_A          284 TG--RVPNT  290 (484)
T ss_dssp             CC--EEECC
T ss_pred             eC--CCcCC
Confidence            99  44443

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.92  E-value=1.3e-08  Score=84.81  Aligned_cols=97  Identities=20%  Similarity=0.182  Sum_probs=79.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc-CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~-g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      ..+++|||+|+.|+.+|..|.+. |.+|+++++.+.+.                                          
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l------------------------------------------  196 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIM------------------------------------------  196 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSS------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccc------------------------------------------
Confidence            36899999999999999999999 99999999875320                                          


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                         +.            .+.  .++.+.+.+.+++.|++  ++.+++|+++...+ +.+.+.+.++.    .+.+|.||+
T Consensus       197 ---~~------------~~~--~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~i~aD~Vv~  252 (472)
T 3iwa_A          197 ---PG------------FTS--KSLSQMLRHDLEKNDVV--VHTGEKVVRLEGEN-GKVARVITDKR----TLDADLVIL  252 (472)
T ss_dssp             ---TT------------TSC--HHHHHHHHHHHHHTTCE--EECSCCEEEEEESS-SBEEEEEESSC----EEECSEEEE
T ss_pred             ---cc------------ccC--HHHHHHHHHHHHhcCCE--EEeCCEEEEEEccC-CeEEEEEeCCC----EEEcCEEEE
Confidence               00            001  67788888888899999  99999999998754 56777777764    799999999


Q ss_pred             ccCC
Q 024975          161 CNGH  164 (259)
Q Consensus       161 AtG~  164 (259)
                      |+|.
T Consensus       253 a~G~  256 (472)
T 3iwa_A          253 AAGV  256 (472)
T ss_dssp             CSCE
T ss_pred             CCCC
Confidence            9994

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.91  E-value=1.6e-08  Score=84.24  Aligned_cols=97  Identities=20%  Similarity=0.309  Sum_probs=78.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+-+|..|.+.|.+|+++++.+.+                                            
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~--------------------------------------------  211 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLF--------------------------------------------  211 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT--------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCcc--------------------------------------------
Confidence            368999999999999999999999999999997532                                            


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                       ++              +.  .++.+.+.+.+++.|++  ++.+++|+++...+ +.+.+.+++     ..+.+|.||+|
T Consensus       212 -l~--------------~~--~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~-~~~~v~~~~-----~~i~aD~Vv~a  266 (467)
T 1zk7_A          212 -FR--------------ED--PAIGEAVTAAFRAEGIE--VLEHTQASQVAHMD-GEFVLTTTH-----GELRADKLLVA  266 (467)
T ss_dssp             -TT--------------SC--HHHHHHHHHHHHHTTCE--EETTCCEEEEEEET-TEEEEEETT-----EEEEESEEEEC
T ss_pred             -CC--------------CC--HHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC-CEEEEEECC-----cEEEcCEEEEC
Confidence             11              00  67778888888889999  99999999998764 556666542     37899999999


Q ss_pred             cCCCCCCc
Q 024975          162 NGHFSVPR  169 (259)
Q Consensus       162 tG~~s~~~  169 (259)
                      +|.  .|+
T Consensus       267 ~G~--~p~  272 (467)
T 1zk7_A          267 TGR--TPN  272 (467)
T ss_dssp             SCE--EES
T ss_pred             CCC--CcC
Confidence            994  444

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.91  E-value=1.7e-08  Score=85.09  Aligned_cols=99  Identities=18%  Similarity=0.125  Sum_probs=81.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +.+++|||||+.|+-+|..+.+.|.+|+|+++...+                                            
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L--------------------------------------------  258 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVL--------------------------------------------  258 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSS--------------------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCeEEEecccccc--------------------------------------------
Confidence            468999999999999999999999999999874311                                            


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +.. .              .++.+.+...+++.+++  ++.++.+..+...+ +...+.+.++.    .+.+|.|++|
T Consensus       259 --~~~-D--------------~ei~~~l~~~l~~~gi~--~~~~~~v~~~~~~~-~~~~v~~~~~~----~~~~D~vLvA  314 (542)
T 4b1b_A          259 --RGF-D--------------QQCAVKVKLYMEEQGVM--FKNGILPKKLTKMD-DKILVEFSDKT----SELYDTVLYA  314 (542)
T ss_dssp             --TTS-C--------------HHHHHHHHHHHHHTTCE--EEETCCEEEEEEET-TEEEEEETTSC----EEEESEEEEC
T ss_pred             --ccc-c--------------hhHHHHHHHHHHhhcce--eecceEEEEEEecC-CeEEEEEcCCC----eEEEEEEEEc
Confidence              000 0              77888899999999999  99999999999886 66777776654    6889999999


Q ss_pred             cCCCCCCcc
Q 024975          162 NGHFSVPRL  170 (259)
Q Consensus       162 tG~~s~~~~  170 (259)
                      +|  ..|+.
T Consensus       315 vG--R~Pnt  321 (542)
T 4b1b_A          315 IG--RKGDI  321 (542)
T ss_dssp             SC--EEESC
T ss_pred             cc--ccCCc
Confidence            99  55554

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.91  E-value=9.2e-09  Score=85.88  Aligned_cols=95  Identities=23%  Similarity=0.356  Sum_probs=74.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++++|||+|+.|+.+|..|.+.|.+|+++++.+.+..                                          
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  223 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT------------------------------------------  223 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh------------------------------------------
Confidence            46899999999999999999999999999999753210                                          


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                                      .+.  .++.+.+.+.+++.|++  ++.+++|+++...+ +.+.+.+++     ..+.+|.||+|
T Consensus       224 ----------------~~~--~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~-~v~~v~~~~-----~~i~~D~vi~a  277 (480)
T 3cgb_A          224 ----------------IYD--GDMAEYIYKEADKHHIE--ILTNENVKAFKGNE-RVEAVETDK-----GTYKADLVLVS  277 (480)
T ss_dssp             ----------------SSC--HHHHHHHHHHHHHTTCE--EECSCCEEEEEESS-BEEEEEETT-----EEEECSEEEEC
T ss_pred             ----------------cCC--HHHHHHHHHHHHHcCcE--EEcCCEEEEEEcCC-cEEEEEECC-----CEEEcCEEEEC
Confidence                            000  67778888888889999  99999999998642 333454432     37999999999


Q ss_pred             cCC
Q 024975          162 NGH  164 (259)
Q Consensus       162 tG~  164 (259)
                      +|.
T Consensus       278 ~G~  280 (480)
T 3cgb_A          278 VGV  280 (480)
T ss_dssp             SCE
T ss_pred             cCC
Confidence            994

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.89  E-value=1.3e-08  Score=85.76  Aligned_cols=101  Identities=17%  Similarity=0.187  Sum_probs=79.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|..|+.+|..|.+.|.+|+++++.+.+.                                            
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l--------------------------------------------  250 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK--------------------------------------------  250 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT--------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc--------------------------------------------
Confidence            689999999999999999999999999999975331                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCc---EEEEEEecCCceEEEEeCEEE
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK---WKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~---~~v~~~~g~~~~~~~~ad~VI  159 (259)
                       +             .+.  .++.+.+.+.+++.|++  ++.+++|+++...+++.   +.|.+.+|.   ..+.+|.||
T Consensus       251 -~-------------~~~--~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~~~~v~~~~v~~~~G~---~~i~aD~Vv  309 (523)
T 1mo9_A          251 -L-------------IKD--NETRAYVLDRMKEQGME--IISGSNVTRIEEDANGRVQAVVAMTPNGE---MRIETDFVF  309 (523)
T ss_dssp             -T-------------CCS--HHHHHHHHHHHHHTTCE--EESSCEEEEEEECTTSBEEEEEEEETTEE---EEEECSCEE
T ss_pred             -c-------------ccc--HHHHHHHHHHHHhCCcE--EEECCEEEEEEEcCCCceEEEEEEECCCc---EEEEcCEEE
Confidence             0             001  67788888888899999  99999999998754232   566664431   368999999


Q ss_pred             EccCCCCCCcc
Q 024975          160 VCNGHFSVPRL  170 (259)
Q Consensus       160 lAtG~~s~~~~  170 (259)
                      +|+|  ..|+.
T Consensus       310 ~A~G--~~p~~  318 (523)
T 1mo9_A          310 LGLG--EQPRS  318 (523)
T ss_dssp             ECCC--CEECC
T ss_pred             ECcC--CccCC
Confidence            9999  44543

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.89  E-value=4.5e-08  Score=81.82  Aligned_cols=104  Identities=19%  Similarity=0.197  Sum_probs=82.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+-+|..|.+.|.+|+++++...+                                            
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l--------------------------------------------  222 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVL--------------------------------------------  222 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSS--------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC--------------------------------------------
Confidence            367999999999999999999999999999874210                                            


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIl  160 (259)
                        +             .+.  .++.+.+.+.+.+.+++  ++.+++|.+++..+++...|.+.++. +....+.+|.||+
T Consensus       223 --~-------------~~d--~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~  283 (483)
T 3dgh_A          223 --R-------------GFD--QQMAELVAASMEERGIP--FLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLW  283 (483)
T ss_dssp             --T-------------TSC--HHHHHHHHHHHHHTTCC--EEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEE
T ss_pred             --c-------------ccC--HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEE
Confidence              0             000  67778888888899999  99999999998865455778887764 4456799999999


Q ss_pred             ccCCCCCCcc
Q 024975          161 CNGHFSVPRL  170 (259)
Q Consensus       161 AtG~~s~~~~  170 (259)
                      |+|  ..|+.
T Consensus       284 a~G--~~p~~  291 (483)
T 3dgh_A          284 AIG--RKGLV  291 (483)
T ss_dssp             CSC--EEECC
T ss_pred             Ccc--cccCc
Confidence            999  44543

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.89  E-value=1.5e-08  Score=83.90  Aligned_cols=100  Identities=19%  Similarity=0.261  Sum_probs=77.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                           
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------------  185 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVL-------------------------------------------  185 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTT-------------------------------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchh-------------------------------------------
Confidence            3689999999999999999999999999999975330                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEE-EEEEecCCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~-v~~~~g~~~~~~~~ad~VIl  160 (259)
                        +            ..+.  .++.+.+.+.+++.|++  ++.+++|+++...+ +.+. +.+ ++    ..+.+|.||+
T Consensus       186 --~------------~~~~--~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~-~~v~~v~~-~g----~~i~~D~vv~  241 (452)
T 2cdu_A          186 --Y------------KYFD--KEFTDILAKDYEAHGVN--LVLGSKVAAFEEVD-DEIITKTL-DG----KEIKSDIAIL  241 (452)
T ss_dssp             --T------------TTSC--HHHHHHHHHHHHHTTCE--EEESSCEEEEEEET-TEEEEEET-TS----CEEEESEEEE
T ss_pred             --h------------hhhh--hhHHHHHHHHHHHCCCE--EEcCCeeEEEEcCC-CeEEEEEe-CC----CEEECCEEEE
Confidence              0            0001  67778888888899999  99999999998644 4343 333 33    3789999999


Q ss_pred             ccCCCCCCcc
Q 024975          161 CNGHFSVPRL  170 (259)
Q Consensus       161 AtG~~s~~~~  170 (259)
                      |+|  ..|+.
T Consensus       242 a~G--~~p~~  249 (452)
T 2cdu_A          242 CIG--FRPNT  249 (452)
T ss_dssp             CCC--EEECC
T ss_pred             CcC--CCCCH
Confidence            999  45543

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.88  E-value=1.4e-08  Score=84.98  Aligned_cols=100  Identities=22%  Similarity=0.349  Sum_probs=76.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.                                           
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------------  230 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCL-------------------------------------------  230 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-------------------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchh-------------------------------------------
Confidence            3689999999999999999999999999999975330                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +            ..+.  .++.+.+.+.+++.|++  ++.+++|+++.. ++....+.+ ++.    .+.+|.||+|
T Consensus       231 --~------------~~~~--~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~-~~~v~~v~~-~g~----~i~~D~Vi~a  286 (490)
T 2bc0_A          231 --A------------GYYD--RDLTDLMAKNMEEHGIQ--LAFGETVKEVAG-NGKVEKIIT-DKN----EYDVDMVILA  286 (490)
T ss_dssp             --T------------TTSC--HHHHHHHHHHHHTTTCE--EEETCCEEEEEC-SSSCCEEEE-SSC----EEECSEEEEC
T ss_pred             --h------------hHHH--HHHHHHHHHHHHhCCeE--EEeCCEEEEEEc-CCcEEEEEE-CCc----EEECCEEEEC
Confidence              0            0000  67778888888889999  999999999985 323233544 333    7999999999


Q ss_pred             cCCCCCCcc
Q 024975          162 NGHFSVPRL  170 (259)
Q Consensus       162 tG~~s~~~~  170 (259)
                      +|  ..|+.
T Consensus       287 ~G--~~p~~  293 (490)
T 2bc0_A          287 VG--FRPNT  293 (490)
T ss_dssp             CC--EEECC
T ss_pred             CC--CCcCh
Confidence            99  45554

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.88  E-value=2e-08  Score=85.63  Aligned_cols=96  Identities=22%  Similarity=0.289  Sum_probs=77.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                            
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------------------------------------------  187 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVM--------------------------------------------  187 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSC--------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccc--------------------------------------------
Confidence            589999999999999999999999999999975320                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEe------------------CCCcEEEEEE
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV------------------ESNKWKVKSR  144 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~------------------~~~~~~v~~~  144 (259)
                       +             .+.  .++...+.+.+++.|++  ++++++|.++...                  .++.+.+.+.
T Consensus       188 -~-------------~~~--~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  249 (565)
T 3ntd_A          188 -T-------------PVD--REMAGFAHQAIRDQGVD--LRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLS  249 (565)
T ss_dssp             -T-------------TSC--HHHHHHHHHHHHHTTCE--EEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEET
T ss_pred             -h-------------hcC--HHHHHHHHHHHHHCCCE--EEeCCeEEEEeccccccccccccccccccccCCCcEEEEEc
Confidence             0             000  67778888888889999  9999999999873                  2245666665


Q ss_pred             ecCCceEEEEeCEEEEccCC
Q 024975          145 KKDDVVEEETFDAVVVCNGH  164 (259)
Q Consensus       145 ~g~~~~~~~~ad~VIlAtG~  164 (259)
                      ++.    .+.+|.||+|+|.
T Consensus       250 ~g~----~i~~D~vi~a~G~  265 (565)
T 3ntd_A          250 NGE----LLETDLLIMAIGV  265 (565)
T ss_dssp             TSC----EEEESEEEECSCE
T ss_pred             CCC----EEEcCEEEECcCC
Confidence            543    7999999999994

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.87  E-value=4e-08  Score=82.03  Aligned_cols=106  Identities=15%  Similarity=0.131  Sum_probs=80.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+-+|..|.+.|.+|+++++.+.+.                                           
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------------  223 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-------------------------------------------  223 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------------------
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc-------------------------------------------
Confidence            3689999999999999999999999999999875331                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC-cEEEEEEecC-Cce--EEEEeCE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKD-DVV--EEETFDA  157 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~-~~~--~~~~ad~  157 (259)
                        +             .+.  .++.+.+.+.+.+.+++  ++.+++|++++..+++ ...+.+.+.. +..  ..+.+|.
T Consensus       224 --~-------------~~d--~~~~~~~~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~  284 (478)
T 3dk9_A          224 --R-------------SFD--SMISTNCTEELENAGVE--VLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDC  284 (478)
T ss_dssp             --T-------------TSC--HHHHHHHHHHHHHTTCE--EETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESE
T ss_pred             --c-------------ccC--HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCE
Confidence              0             000  67778888888889999  9999999999876533 3556665422 222  5789999


Q ss_pred             EEEccCCCCCCccC
Q 024975          158 VVVCNGHFSVPRLA  171 (259)
Q Consensus       158 VIlAtG~~s~~~~~  171 (259)
                      ||+|+|  ..|+..
T Consensus       285 vi~a~G--~~p~~~  296 (478)
T 3dk9_A          285 LLWAIG--RVPNTK  296 (478)
T ss_dssp             EEECSC--EEESCT
T ss_pred             EEEeec--cccCCC
Confidence            999999  455543

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.87  E-value=2.8e-08  Score=85.37  Aligned_cols=40  Identities=28%  Similarity=0.454  Sum_probs=36.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCcee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW   41 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~   41 (259)
                      .+||+|||+|++|+++|..|+++|++|+|+|+.+..+|.+
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~   85 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   85 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence            3799999999999999999999999999999998777633

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.86  E-value=1.6e-08  Score=83.99  Aligned_cols=87  Identities=17%  Similarity=0.200  Sum_probs=53.1

Q ss_pred             hCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEccCCCCCCc--cCCCCCCCCCCCceEEcccCCCC
Q 024975          116 FGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVPR--LAQVPGIDSWPGKQMHSHNYRIP  192 (259)
Q Consensus       116 ~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlAtG~~s~~~--~~~~~g~~~~~~~~~~~~~~~~~  192 (259)
                      .+++  ++.+++|++++..+ +.|.|.+.+. +++...+.+|.||+|||.  .|+  .+-+.++....+.+.....+...
T Consensus       329 ~~v~--i~~~~~v~~v~~~~-~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~--~p~~~~~~l~~l~~~~g~i~v~~~~~~~  403 (463)
T 3s5w_A          329 PRHA--FRCMTTVERATATA-QGIELALRDAGSGELSVETYDAVILATGY--ERQLHRQLLEPLAEYLGDHEIGRDYRLQ  403 (463)
T ss_dssp             CCSE--EETTEEEEEEEEET-TEEEEEEEETTTCCEEEEEESEEEECCCE--ECCC-CTTTGGGGGGBC--CCCTTSBCC
T ss_pred             CCeE--EEeCCEEEEEEecC-CEEEEEEEEcCCCCeEEEECCEEEEeeCC--CCCCccchhHHHHHHhCCcccCcccccc
Confidence            4777  99999999998876 7788988854 355567999999999994  454  33333332211222222222221


Q ss_pred             C-CCCCCeEEEEccCc
Q 024975          193 N-PFQDQVVILIGHYA  207 (259)
Q Consensus       193 ~-~~~~~~v~viG~G~  207 (259)
                      . .....+|.++|...
T Consensus       404 ~~~~~~~~Ifa~G~~~  419 (463)
T 3s5w_A          404 TDERCKVAIYAQGFSQ  419 (463)
T ss_dssp             BCTTBCSEEEESSCCH
T ss_pred             cCCCCCCeEEEcCCCc
Confidence            1 11245688888643

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.85  E-value=9.6e-08  Score=79.91  Aligned_cols=104  Identities=16%  Similarity=0.186  Sum_probs=81.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+-+|..|.+.|.+|+++++...+                                            
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l--------------------------------------------  220 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPL--------------------------------------------  220 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSS--------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCccc--------------------------------------------
Confidence            357999999999999999999999999999885310                                            


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIl  160 (259)
                        +             .+.  .++.+.+.+.+++.+++  ++.++++.++...+++...+.+.+.+ ++...+.+|.||+
T Consensus       221 --~-------------~~d--~~~~~~l~~~l~~~gv~--~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~  281 (488)
T 3dgz_A          221 --R-------------GFD--QQMSSLVTEHMESHGTQ--FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLW  281 (488)
T ss_dssp             --T-------------TSC--HHHHHHHHHHHHHTTCE--EEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEE
T ss_pred             --c-------------cCC--HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEE
Confidence              0             000  67788888888899999  99999999998755456777777643 3334689999999


Q ss_pred             ccCCCCCCcc
Q 024975          161 CNGHFSVPRL  170 (259)
Q Consensus       161 AtG~~s~~~~  170 (259)
                      |+|  ..|+.
T Consensus       282 a~G--~~p~~  289 (488)
T 3dgz_A          282 AIG--RVPET  289 (488)
T ss_dssp             CSC--EEESC
T ss_pred             ccc--CCccc
Confidence            999  45544

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.82  E-value=2.8e-08  Score=83.18  Aligned_cols=101  Identities=21%  Similarity=0.236  Sum_probs=77.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHH----cCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLR----EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL   77 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~----~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (259)
                      ..+|+|||+|+.|+-+|..|.+    .|.+|+++++.+.+.                                       
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~---------------------------------------  220 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM---------------------------------------  220 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT---------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccc---------------------------------------
Confidence            3689999999999999999987    478899998764210                                       


Q ss_pred             ceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCE
Q 024975           78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (259)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~  157 (259)
                                        ...++  ..+...+.+.+++.|++  ++.+++|+++...+ +...+.+.+|.    .+.+|.
T Consensus       221 ------------------~~~l~--~~~~~~~~~~l~~~GV~--v~~~~~V~~i~~~~-~~~~v~l~dG~----~i~aD~  273 (493)
T 1m6i_A          221 ------------------GKILP--EYLSNWTMEKVRREGVK--VMPNAIVQSVGVSS-GKLLIKLKDGR----KVETDH  273 (493)
T ss_dssp             ------------------TTTSC--HHHHHHHHHHHHTTTCE--EECSCCEEEEEEET-TEEEEEETTSC----EEEESE
T ss_pred             ------------------cccCC--HHHHHHHHHHHHhcCCE--EEeCCEEEEEEecC-CeEEEEECCCC----EEECCE
Confidence                              00111  56777888888888999  99999999998764 55667776654    799999


Q ss_pred             EEEccCCCCCCcc
Q 024975          158 VVVCNGHFSVPRL  170 (259)
Q Consensus       158 VIlAtG~~s~~~~  170 (259)
                      ||+|+|  ..|+.
T Consensus       274 Vv~a~G--~~pn~  284 (493)
T 1m6i_A          274 IVAAVG--LEPNV  284 (493)
T ss_dssp             EEECCC--EEECC
T ss_pred             EEECCC--CCccH
Confidence            999999  44443

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.80  E-value=4.4e-08  Score=81.41  Aligned_cols=100  Identities=14%  Similarity=0.221  Sum_probs=78.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                           
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l-------------------------------------------  206 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL-------------------------------------------  206 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------------------
Confidence            4689999999999999999999999999999975320                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEE-EEecCCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVK-SRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~-~~~g~~~~~~~~ad~VIl  160 (259)
                        +             .+.  .++.+.+.+.+++.|++  ++.+++|.++...+++.+.|. ++++    . +.+|.||+
T Consensus       207 --~-------------~~~--~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~~g----~-i~aD~Vv~  262 (463)
T 4dna_A          207 --S-------------RFD--QDMRRGLHAAMEEKGIR--ILCEDIIQSVSADADGRRVATTMKHG----E-IVADQVML  262 (463)
T ss_dssp             --T-------------TSC--HHHHHHHHHHHHHTTCE--EECSCCEEEEEECTTSCEEEEESSSC----E-EEESEEEE
T ss_pred             --c-------------ccC--HHHHHHHHHHHHHCCCE--EECCCEEEEEEEcCCCEEEEEEcCCC----e-EEeCEEEE
Confidence              0             000  67778888888899999  999999999988653445666 5442    2 89999999


Q ss_pred             ccCCCCCCcc
Q 024975          161 CNGHFSVPRL  170 (259)
Q Consensus       161 AtG~~s~~~~  170 (259)
                      |+|  ..|+.
T Consensus       263 a~G--~~p~~  270 (463)
T 4dna_A          263 ALG--RMPNT  270 (463)
T ss_dssp             CSC--EEESC
T ss_pred             eeC--cccCC
Confidence            999  44543

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.78  E-value=4.8e-09  Score=86.92  Aligned_cols=42  Identities=24%  Similarity=0.339  Sum_probs=39.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      .+||+|||||++||++|..|+++|.+|+|+|+++.+||.+..
T Consensus        11 ~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   52 (453)
T 2bcg_G           11 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS   52 (453)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence            379999999999999999999999999999999999988654

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.78  E-value=4.9e-09  Score=84.12  Aligned_cols=43  Identities=40%  Similarity=0.652  Sum_probs=39.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC-CCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~-~~~gg~~~~~   44 (259)
                      .+||+|||||++||++|+.|.++|++|+|+|++ +.+||.+...
T Consensus        44 ~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~   87 (376)
T 2e1m_A           44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTF   87 (376)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeee
Confidence            479999999999999999999999999999999 9999987653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.77  E-value=1.2e-07  Score=74.72  Aligned_cols=101  Identities=16%  Similarity=0.180  Sum_probs=75.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+|+|||+|+.|+-+|..|.+.+.+|+++++.+.+.                                            
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------------------------------------------  181 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--------------------------------------------  181 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC--------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc--------------------------------------------
Confidence            589999999999999999999999999999864220                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC--CceEEEEeCEEEE
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD--DVVEEETFDAVVV  160 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~--~~~~~~~ad~VIl  160 (259)
                                        ....+.+.+.+.+.+.+++  ++++++|+++...+++...|.+.+..  +....+.+|.||+
T Consensus       182 ------------------~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~  241 (320)
T 1trb_A          182 ------------------AEKILIKRLMDKVENGNII--LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFV  241 (320)
T ss_dssp             ------------------CCHHHHHHHHHHHHTSSEE--EECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEE
T ss_pred             ------------------cCHHHHHHHHHhcccCCeE--EEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEE
Confidence                              0045556666777778998  99999999998765333346666421  2235789999999


Q ss_pred             ccCCCCCCc
Q 024975          161 CNGHFSVPR  169 (259)
Q Consensus       161 AtG~~s~~~  169 (259)
                      |+|  ..|+
T Consensus       242 a~G--~~p~  248 (320)
T 1trb_A          242 AIG--HSPN  248 (320)
T ss_dssp             CSC--EEES
T ss_pred             EeC--CCCC
Confidence            999  4444

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.76  E-value=3e-08  Score=81.76  Aligned_cols=95  Identities=17%  Similarity=0.248  Sum_probs=74.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+-+|..|.+.|.+|+++++.+.+...                                         
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~-----------------------------------------  185 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-----------------------------------------  185 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT-----------------------------------------
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc-----------------------------------------
Confidence            358999999999999999999999999999997643100                                         


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                       +                .  .++.+.+.+.+.+.+++  ++.+++|.+++.     ..+.++++.    .+.+|.|++|
T Consensus       186 -~----------------d--~~~~~~~~~~l~~~gV~--i~~~~~v~~~~~-----~~v~~~~g~----~~~~D~vl~a  235 (437)
T 4eqs_A          186 -M----------------D--ADMNQPILDELDKREIP--YRLNEEINAING-----NEITFKSGK----VEHYDMIIEG  235 (437)
T ss_dssp             -S----------------C--GGGGHHHHHHHHHTTCC--EEESCCEEEEET-----TEEEETTSC----EEECSEEEEC
T ss_pred             -c----------------c--chhHHHHHHHhhccceE--EEeccEEEEecC-----CeeeecCCe----EEeeeeEEEE
Confidence             0                0  45566778888889999  999999988752     235666655    7999999999


Q ss_pred             cCCCCCCc
Q 024975          162 NGHFSVPR  169 (259)
Q Consensus       162 tG~~s~~~  169 (259)
                      +|  ..|+
T Consensus       236 ~G--~~Pn  241 (437)
T 4eqs_A          236 VG--THPN  241 (437)
T ss_dssp             CC--EEES
T ss_pred             ec--eecC
Confidence            99  4554

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.76  E-value=6.5e-09  Score=85.41  Aligned_cols=42  Identities=38%  Similarity=0.621  Sum_probs=38.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC-CcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~~~gg~~~~   43 (259)
                      .+||+|||||++||++|..|.+.| .+|+|+|+++.+||.+..
T Consensus         6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t   48 (424)
T 2b9w_A            6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHS   48 (424)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccc
Confidence            479999999999999999999999 899999999999986543

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.76  E-value=6.2e-09  Score=85.49  Aligned_cols=40  Identities=40%  Similarity=0.756  Sum_probs=37.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~   42 (259)
                      +||+|||||++||++|++|+++|.+|+|+|+++.+||.+.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~   40 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFT   40 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeE
Confidence            4899999999999999999999999999999999987654

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.75  E-value=4.3e-09  Score=88.71  Aligned_cols=41  Identities=37%  Similarity=0.612  Sum_probs=38.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcC-CcEEEEeeCCCcCceeee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~~~gg~~~~   43 (259)
                      +||+|||||++||+||..|.+.| .+|+|+|+.+.+||.+..
T Consensus         9 ~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t   50 (516)
T 1rsg_A            9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQT   50 (516)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCE
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceee
Confidence            69999999999999999999999 999999999999987643

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.75  E-value=7.1e-09  Score=83.85  Aligned_cols=42  Identities=26%  Similarity=0.441  Sum_probs=39.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      .+||+|||||++|+++|+.|.+.|.+|+|+|+.+.+||.+..
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~   70 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYD   70 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCC
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccce
Confidence            479999999999999999999999999999999999998764

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.75  E-value=6e-09  Score=85.60  Aligned_cols=40  Identities=38%  Similarity=0.629  Sum_probs=37.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~   42 (259)
                      +||+|||||++||++|++|+++|.+|+|+|+++.+||.+.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~   40 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFT   40 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCcee
Confidence            5999999999999999999999999999999999987653

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.74  E-value=8.3e-09  Score=84.07  Aligned_cols=42  Identities=24%  Similarity=0.421  Sum_probs=39.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc-CCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~-g~~v~v~e~~~~~gg~~~~   43 (259)
                      ++||+|||||++|+++|+.|.+. |.+|+|+|+++.+||.+..
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~   49 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYS   49 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeee
Confidence            48999999999999999999999 9999999999999988754

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.73  E-value=2.4e-07  Score=78.05  Aligned_cols=104  Identities=14%  Similarity=0.212  Sum_probs=77.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+-+|..|.+.|.+|+++++.. +                                            
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~--------------------------------------------  244 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-L--------------------------------------------  244 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-S--------------------------------------------
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEeccc-c--------------------------------------------
Confidence            3579999999999999999999999999998742 1                                            


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC---CcEEEEEEecCC-ceEEEEeCE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES---NKWKVKSRKKDD-VVEEETFDA  157 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~---~~~~v~~~~g~~-~~~~~~ad~  157 (259)
                       .+             .+.  .++.+.+.+.+.+.+++  ++.+++++.+...++   +...+.....++ +...+.+|.
T Consensus       245 -l~-------------~~d--~~~~~~~~~~l~~~GV~--v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~  306 (519)
T 3qfa_A          245 -LR-------------GFD--QDMANKIGEHMEEHGIK--FIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNT  306 (519)
T ss_dssp             -ST-------------TSC--HHHHHHHHHHHHHTTCE--EEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESE
T ss_pred             -cc-------------cCC--HHHHHHHHHHHHHCCCE--EEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCE
Confidence             00             000  67778888888889999  999998888876542   345565554333 234678999


Q ss_pred             EEEccCCCCCCcc
Q 024975          158 VVVCNGHFSVPRL  170 (259)
Q Consensus       158 VIlAtG~~s~~~~  170 (259)
                      ||+|+|  ..|+.
T Consensus       307 vi~a~G--~~p~~  317 (519)
T 3qfa_A          307 VMLAIG--RDACT  317 (519)
T ss_dssp             EEECSC--EEESC
T ss_pred             EEEecC--CcccC
Confidence            999999  45554

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.73  E-value=4.4e-08  Score=78.86  Aligned_cols=92  Identities=26%  Similarity=0.362  Sum_probs=73.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+.+|..|.+.|.+|+++++.+.+..                                           
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------------------  180 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-------------------------------------------  180 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-------------------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc-------------------------------------------
Confidence            5899999999999999999999999999999753310                                           


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                                      +.  .++.+++.+.+++.|++  ++.+++|++++  . .  .+.++++    . +.+|.||+|+
T Consensus       181 ----------------~~--~~~~~~l~~~l~~~gV~--i~~~~~v~~i~--~-~--~v~~~~g----~-i~~D~vi~a~  230 (367)
T 1xhc_A          181 ----------------LD--EELSNMIKDMLEETGVK--FFLNSELLEAN--E-E--GVLTNSG----F-IEGKVKICAI  230 (367)
T ss_dssp             ----------------CC--HHHHHHHHHHHHHTTEE--EECSCCEEEEC--S-S--EEEETTE----E-EECSCEEEEC
T ss_pred             ----------------CC--HHHHHHHHHHHHHCCCE--EEcCCEEEEEE--e-e--EEEECCC----E-EEcCEEEECc
Confidence                            01  67778888888889999  99999999986  2 2  3555432    3 8999999999


Q ss_pred             CCCCCCc
Q 024975          163 GHFSVPR  169 (259)
Q Consensus       163 G~~s~~~  169 (259)
                      |  ..|+
T Consensus       231 G--~~p~  235 (367)
T 1xhc_A          231 G--IVPN  235 (367)
T ss_dssp             C--EEEC
T ss_pred             C--CCcC
Confidence            9  4454

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.72  E-value=7.1e-08  Score=82.58  Aligned_cols=94  Identities=22%  Similarity=0.274  Sum_probs=75.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                           
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------------  223 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVM-------------------------------------------  223 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc-------------------------------------------
Confidence            3689999999999999999999999999999865321                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +.             +.  .++...+.+.+++.|++  ++.+++|.++.... +  .|.+.++.    .+.+|.||+|
T Consensus       224 --~~-------------~~--~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~--~v~~~~g~----~i~~D~Vi~a  277 (588)
T 3ics_A          224 --PP-------------ID--YEMAAYVHEHMKNHDVE--LVFEDGVDALEENG-A--VVRLKSGS----VIQTDMLILA  277 (588)
T ss_dssp             --TT-------------SC--HHHHHHHHHHHHHTTCE--EECSCCEEEEEGGG-T--EEEETTSC----EEECSEEEEC
T ss_pred             --cc-------------CC--HHHHHHHHHHHHHcCCE--EEECCeEEEEecCC-C--EEEECCCC----EEEcCEEEEc
Confidence              00             00  67778888888889999  99999999997543 3  45565554    7999999999


Q ss_pred             cCC
Q 024975          162 NGH  164 (259)
Q Consensus       162 tG~  164 (259)
                      +|.
T Consensus       278 ~G~  280 (588)
T 3ics_A          278 IGV  280 (588)
T ss_dssp             SCE
T ss_pred             cCC
Confidence            994

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.72  E-value=1e-07  Score=79.26  Aligned_cols=104  Identities=16%  Similarity=0.289  Sum_probs=74.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.                                           
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------------  208 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRAL-------------------------------------------  208 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCC-------------------------------------------
Confidence            3679999999999999999999999999999975331                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +..            +.  .++.+.+.+.+.   ++  ++.+++|+++...+++...+.+++.+++...+.+|.||+|
T Consensus       209 --~~~------------~d--~~~~~~l~~~l~---v~--i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a  267 (466)
T 3l8k_A          209 --ITL------------ED--QDIVNTLLSILK---LN--IKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLA  267 (466)
T ss_dssp             --TTS------------CC--HHHHHHHHHHHC---CC--EECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEEC
T ss_pred             --CCC------------CC--HHHHHHHHhcCE---EE--EEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEEC
Confidence              000            00  555555555543   77  9999999999875424456666631233357899999999


Q ss_pred             cCCCCCCccC
Q 024975          162 NGHFSVPRLA  171 (259)
Q Consensus       162 tG~~s~~~~~  171 (259)
                      +|  ..|+..
T Consensus       268 ~G--~~p~~~  275 (466)
T 3l8k_A          268 AG--RRPVIP  275 (466)
T ss_dssp             CC--EEECCC
T ss_pred             cC--CCcccc
Confidence            99  555544

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.71  E-value=1.2e-08  Score=86.56  Aligned_cols=35  Identities=29%  Similarity=0.411  Sum_probs=32.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC-CcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~~   36 (259)
                      .||++|||||.+|+.+|.+|++.+ .+|+|+|+++.
T Consensus         6 ~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             EEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            489999999999999999999987 79999999875

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=98.71  E-value=9.1e-09  Score=87.34  Aligned_cols=70  Identities=14%  Similarity=0.089  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHhCCceeEEeceeEEEEEEe----CCCcEEEEEEecCCceEEEEeC-EEEEccCCCCCCccCCCCCC
Q 024975          105 VLRYLQNFAREFGVDQVVRLHTEVLNARLV----ESNKWKVKSRKKDDVVEEETFD-AVVVCNGHFSVPRLAQVPGI  176 (259)
Q Consensus       105 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~----~~~~~~v~~~~g~~~~~~~~ad-~VIlAtG~~s~~~~~~~~g~  176 (259)
                      ...||.....+.++.  +..++.|++|..+    ......|++.+.++....+.|+ .||+|+|+...|.++.+.|+
T Consensus       229 a~ayL~p~~~r~NL~--V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGI  303 (583)
T 3qvp_A          229 AREWLLPNYQRPNLQ--VLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGI  303 (583)
T ss_dssp             HHHHTTTTTTCTTEE--EECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHHHTTB
T ss_pred             HHHHHHHhhcCCCcE--EEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHHHcCC
Confidence            345665555566787  9999999999987    3233456666434556678887 69999998887876554443

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.70  E-value=1.4e-08  Score=85.06  Aligned_cols=40  Identities=38%  Similarity=0.550  Sum_probs=37.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCcee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW   41 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~   41 (259)
                      .+||+|||||++||++|+.|.+.|.+|+|+|+.+.+||.+
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~   50 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRV   50 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCce
Confidence            4799999999999999999999999999999999999864

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.69  E-value=3.6e-07  Score=72.51  Aligned_cols=102  Identities=18%  Similarity=0.176  Sum_probs=76.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+|+|||+|..|+-+|..|.+.+.+|+++++.+.+.                                           
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~-------------------------------------------  188 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFR-------------------------------------------  188 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCC-------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccC-------------------------------------------
Confidence            3689999999999999999999999999999864220                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIl  160 (259)
                                         ....+.+.+.+.+.+.+++  ++.+++|.++...+ +...|.+... ++....+.+|.||+
T Consensus       189 -------------------~~~~~~~~l~~~l~~~gv~--v~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~  246 (335)
T 2zbw_A          189 -------------------AHEASVKELMKAHEEGRLE--VLTPYELRRVEGDE-RVRWAVVFHNQTQEELALEVDAVLI  246 (335)
T ss_dssp             -------------------SCHHHHHHHHHHHHTTSSE--EETTEEEEEEEESS-SEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             -------------------ccHHHHHHHHhccccCCeE--EecCCcceeEccCC-CeeEEEEEECCCCceEEEecCEEEE
Confidence                               0034455666777777999  99999999998742 4335666632 23345789999999


Q ss_pred             ccCCCCCCcc
Q 024975          161 CNGHFSVPRL  170 (259)
Q Consensus       161 AtG~~s~~~~  170 (259)
                      |+|  ..|+.
T Consensus       247 a~G--~~p~~  254 (335)
T 2zbw_A          247 LAG--YITKL  254 (335)
T ss_dssp             CCC--EEEEC
T ss_pred             eec--CCCCc
Confidence            999  44543

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.68  E-value=1.4e-08  Score=81.86  Aligned_cols=41  Identities=29%  Similarity=0.497  Sum_probs=38.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~   42 (259)
                      ++||+|||||++|+++|.+|.+.|.+|+|+|+++.+||.+.
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~   41 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAY   41 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceE
Confidence            47999999999999999999999999999999999998764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.68  E-value=4.6e-07  Score=77.72  Aligned_cols=103  Identities=21%  Similarity=0.269  Sum_probs=74.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+-+|..|.+.|.+|+++++.. +    .                                        
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~----l----------------------------------------  321 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRSI-L----L----------------------------------------  321 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-S----S----------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCc-C----c----------------------------------------
Confidence            579999999999999999999999999999851 1    0                                        


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEe-----CC---CcEEEEEEecCCceEEEE
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV-----ES---NKWKVKSRKKDDVVEEET  154 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~-----~~---~~~~v~~~~g~~~~~~~~  154 (259)
                       +             .+.  .++..++.+.+.+.|++  ++.++.++.+...     .+   +.+.+.....+++...+.
T Consensus       322 -~-------------~~d--~~~~~~~~~~l~~~gv~--i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~  383 (598)
T 2x8g_A          322 -R-------------GFD--QQMAEKVGDYMENHGVK--FAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEE  383 (598)
T ss_dssp             -T-------------TSC--HHHHHHHHHHHHHTTCE--EEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEE
T ss_pred             -C-------------cCC--HHHHHHHHHHHHhCCCE--EEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEecc
Confidence             0             000  56777788888888999  9999988888653     21   334455433233334456


Q ss_pred             eCEEEEccCCCCCCcc
Q 024975          155 FDAVVVCNGHFSVPRL  170 (259)
Q Consensus       155 ad~VIlAtG~~s~~~~  170 (259)
                      +|.||+|+|  ..|+.
T Consensus       384 ~D~vi~a~G--~~p~~  397 (598)
T 2x8g_A          384 FETVIFAVG--REPQL  397 (598)
T ss_dssp             ESEEEECSC--EEECG
T ss_pred             CCEEEEEeC--Ccccc
Confidence            999999999  45544

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.67  E-value=5.9e-08  Score=81.28  Aligned_cols=96  Identities=19%  Similarity=0.295  Sum_probs=72.9

Q ss_pred             eEEEECCChHHHHHHHHHHHc--------------CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccc
Q 024975            4 HVAVIGAGAAGLVVGHELLRE--------------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSL   69 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~--------------g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (259)
                      .++|||||+.|+-+|..|.+.              ..+|+++|..+.+-                               
T Consensus       219 ~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il-------------------------------  267 (502)
T 4g6h_A          219 SIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL-------------------------------  267 (502)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS-------------------------------
T ss_pred             ceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc-------------------------------
Confidence            699999999999999998753              36899999976431                               


Q ss_pred             eeccccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCC-
Q 024975           70 RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD-  148 (259)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~-  148 (259)
                                    +             .++  .++.+++.+.+++.|++  ++++++|++++.   +...+.....++ 
T Consensus       268 --------------~-------------~~~--~~~~~~~~~~L~~~GV~--v~~~~~v~~v~~---~~~~~~~~~~dg~  313 (502)
T 4g6h_A          268 --------------N-------------MFE--KKLSSYAQSHLENTSIK--VHLRTAVAKVEE---KQLLAKTKHEDGK  313 (502)
T ss_dssp             --------------T-------------TSC--HHHHHHHHHHHHHTTCE--EETTEEEEEECS---SEEEEEEECTTSC
T ss_pred             --------------c-------------CCC--HHHHHHHHHHHHhccee--eecCceEEEEeC---CceEEEEEecCcc
Confidence                          0             111  78889999999999999  999999999863   334444443332 


Q ss_pred             -ceEEEEeCEEEEccCC
Q 024975          149 -VVEEETFDAVVVCNGH  164 (259)
Q Consensus       149 -~~~~~~ad~VIlAtG~  164 (259)
                       ....+.+|.||.|+|.
T Consensus       314 ~~~~~i~ad~viwa~Gv  330 (502)
T 4g6h_A          314 ITEETIPYGTLIWATGN  330 (502)
T ss_dssp             EEEEEEECSEEEECCCE
T ss_pred             cceeeeccCEEEEccCC
Confidence             2356999999999994

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.67  E-value=1.2e-08  Score=84.58  Aligned_cols=41  Identities=39%  Similarity=0.626  Sum_probs=38.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~   42 (259)
                      .+||+|||||++||++|..|.+.|.+|+|+|+++.+||.+.
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~   45 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTW   45 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence            37999999999999999999999999999999999987763

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.67  E-value=2.2e-07  Score=74.59  Aligned_cols=98  Identities=19%  Similarity=0.253  Sum_probs=72.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+|+|||+|+.|+-+|..|.+.+.+|+++++.+.+.                                            
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~--------------------------------------------  199 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQ--------------------------------------------  199 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCS--------------------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCC--------------------------------------------
Confidence            579999999999999999999999999999864320                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                       +                 ...+.+.+.+...+.+++  ++.+++|+++...++....|.+...+++...+.+|.||+|+
T Consensus       200 -~-----------------~~~~~~~l~~~~~~~gv~--i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~  259 (360)
T 3ab1_A          200 -G-----------------HGKTAHEVERARANGTID--VYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILI  259 (360)
T ss_dssp             -S-----------------CSHHHHSSHHHHHHTSEE--EESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECC
T ss_pred             -C-----------------CHHHHHHHHHHhhcCceE--EEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECC
Confidence             0                 022334455556677888  99999999998764232245555323434579999999999


Q ss_pred             CC
Q 024975          163 GH  164 (259)
Q Consensus       163 G~  164 (259)
                      |.
T Consensus       260 G~  261 (360)
T 3ab1_A          260 GF  261 (360)
T ss_dssp             CB
T ss_pred             CC
Confidence            94

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.66  E-value=1.3e-07  Score=78.21  Aligned_cols=94  Identities=23%  Similarity=0.360  Sum_probs=71.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+.+|..|.+.|.+|+++++.+.+...                                          
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  186 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR------------------------------------------  186 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh------------------------------------------
Confidence            58999999999999999999999999999997533100                                          


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                                     .+.  .++.+.+.+.+.+. ++  ++.++.|.++...+ ....+ ..++    ..+.+|.||+|+
T Consensus       187 ---------------~~~--~~~~~~l~~~l~~~-v~--i~~~~~v~~i~~~~-~v~~v-~~~g----~~i~~D~Vv~a~  240 (449)
T 3kd9_A          187 ---------------SFD--KEVTDILEEKLKKH-VN--LRLQEITMKIEGEE-RVEKV-VTDA----GEYKAELVILAT  240 (449)
T ss_dssp             ---------------TSC--HHHHHHHHHHHTTT-SE--EEESCCEEEEECSS-SCCEE-EETT----EEEECSEEEECS
T ss_pred             ---------------hcC--HHHHHHHHHHHHhC-cE--EEeCCeEEEEeccC-cEEEE-EeCC----CEEECCEEEEee
Confidence                           011  67777888888777 88  99999999997543 22223 3333    379999999999


Q ss_pred             CC
Q 024975          163 GH  164 (259)
Q Consensus       163 G~  164 (259)
                      |.
T Consensus       241 G~  242 (449)
T 3kd9_A          241 GI  242 (449)
T ss_dssp             CE
T ss_pred             CC
Confidence            94

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.64  E-value=2.3e-07  Score=74.59  Aligned_cols=107  Identities=13%  Similarity=0.192  Sum_probs=73.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+....                                         
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~-----------------------------------------  205 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPD-----------------------------------------  205 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC-------------------------------------------------
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCC-----------------------------------------
Confidence            479999999999999999999999999999975331000                                         


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        ++        ....++  ..+.+.+.+.+.+.+ ++  ++.+++|.++...+ +.+.+.+.+|.   ....+|.||+|
T Consensus       206 --~d--------~~~~~~--~~~~~~l~~~l~~~g~v~--~~~~~~v~~i~~~~-~~~~v~~~~g~---~~~~~d~vi~a  267 (369)
T 3d1c_A          206 --AD--------PSVRLS--PYTRQRLGNVIKQGARIE--MNVHYTVKDIDFNN-GQYHISFDSGQ---SVHTPHEPILA  267 (369)
T ss_dssp             ------------CTTSCC--HHHHHHHHHHHHTTCCEE--EECSCCEEEEEEET-TEEEEEESSSC---CEEESSCCEEC
T ss_pred             --CC--------CCccCC--HHHHHHHHHHHhhCCcEE--EecCcEEEEEEecC-CceEEEecCCe---EeccCCceEEe
Confidence              00        000011  556667777777775 88  99999999997654 56677776654   22345999999


Q ss_pred             cCCCCCCcc
Q 024975          162 NGHFSVPRL  170 (259)
Q Consensus       162 tG~~s~~~~  170 (259)
                      ||  ..|+.
T Consensus       268 ~G--~~~~~  274 (369)
T 3d1c_A          268 TG--FDATK  274 (369)
T ss_dssp             CC--BCGGG
T ss_pred             ec--cCCcc
Confidence            99  45544

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.64  E-value=2.1e-08  Score=84.20  Aligned_cols=40  Identities=40%  Similarity=0.618  Sum_probs=37.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCcee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW   41 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~   41 (259)
                      ++||+|||||++||++|+.|.+.|++|+|+|+.+.+||.+
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~   52 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKL   52 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence            4799999999999999999999999999999999998764

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.64  E-value=2.1e-08  Score=83.68  Aligned_cols=41  Identities=24%  Similarity=0.441  Sum_probs=37.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcCceee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~gg~~~   42 (259)
                      ++||+|||||++|+++|++|.+.|  .+|+|+|+.+.+||.+.
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~   46 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVA   46 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCC
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeE
Confidence            589999999999999999999999  99999999999987643

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.63  E-value=1.8e-08  Score=85.18  Aligned_cols=35  Identities=26%  Similarity=0.504  Sum_probs=32.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHH-cCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~-~g~~v~v~e~~~~   36 (259)
                      .||++|||+|++|+.+|.+|++ .+.+|+|+|+++.
T Consensus        17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            4899999999999999999998 6789999999865

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.63  E-value=2.6e-07  Score=73.29  Aligned_cols=94  Identities=16%  Similarity=0.214  Sum_probs=69.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+.+|..|.+.+.+|+++++.+.+..                                           
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------------------------------------------  210 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------------------------------------------  210 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------------------------------------------
Confidence            6799999999999999999999999999998653200                                           


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEE
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV  160 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIl  160 (259)
                                         ..    .+.+.+.+ .+++  ++.+++|.++...+++...|.+.+. ++....+.+|.||+
T Consensus       211 -------------------~~----~~~~~l~~~~gv~--i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~  265 (338)
T 3itj_A          211 -------------------ST----IMQKRAEKNEKIE--ILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFY  265 (338)
T ss_dssp             -------------------CH----HHHHHHHHCTTEE--EECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEE
T ss_pred             -------------------CH----HHHHHHHhcCCeE--EeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEE
Confidence                               02    22333334 4888  9999999999876533444777662 23345799999999


Q ss_pred             ccCC
Q 024975          161 CNGH  164 (259)
Q Consensus       161 AtG~  164 (259)
                      |+|.
T Consensus       266 a~G~  269 (338)
T 3itj_A          266 AIGH  269 (338)
T ss_dssp             CSCE
T ss_pred             EeCC
Confidence            9994

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.63  E-value=3.2e-08  Score=82.63  Aligned_cols=42  Identities=29%  Similarity=0.392  Sum_probs=39.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC-CcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~~~gg~~~~   43 (259)
                      ++||+|||||++||++|++|.+.| .+|+|+|+.+.+||.+..
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~   51 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS   51 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence            479999999999999999999998 799999999999988765

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.62  E-value=3e-08  Score=80.31  Aligned_cols=42  Identities=29%  Similarity=0.652  Sum_probs=39.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      .+||+|||||++|+++|..|.+.|.+|+|+|+++.+||.+..
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~   44 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD   44 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcccc
Confidence            469999999999999999999999999999999999988754

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.62  E-value=2.5e-08  Score=83.66  Aligned_cols=40  Identities=30%  Similarity=0.518  Sum_probs=37.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~   42 (259)
                      +||+|||||++||++|..|.+.|++|+|+|+++.+||.+.
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~   79 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSW   79 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcce
Confidence            7999999999999999999999999999999999997753

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.61  E-value=2.5e-08  Score=82.07  Aligned_cols=35  Identities=34%  Similarity=0.581  Sum_probs=32.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |++||+||||||+|+++|..|+++|++|+|+|+.+
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            45899999999999999999999999999999975

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.60  E-value=1.8e-07  Score=73.40  Aligned_cols=95  Identities=14%  Similarity=0.144  Sum_probs=70.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+.+|..|.+.+.+|+++++.+.+    ..                                       
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~----~~---------------------------------------  184 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF----RA---------------------------------------  184 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC----BS---------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC----CC---------------------------------------
Confidence            57999999999999999999999999999886532    00                                       


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                           .              ..   ++.+..++.+++  +++++++.++...++....+.+...+++...+.+|.||+|+
T Consensus       185 -----~--------------~~---~~~~~~~~~gv~--~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~  240 (315)
T 3r9u_A          185 -----A--------------PS---TVEKVKKNEKIE--LITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFV  240 (315)
T ss_dssp             -----C--------------HH---HHHHHHHCTTEE--EECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECS
T ss_pred             -----C--------------HH---HHHHHHhcCCeE--EEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEE
Confidence                 0              22   223344567888  99999999998765333346665333444578999999999


Q ss_pred             CC
Q 024975          163 GH  164 (259)
Q Consensus       163 G~  164 (259)
                      |.
T Consensus       241 G~  242 (315)
T 3r9u_A          241 GL  242 (315)
T ss_dssp             CE
T ss_pred             cC
Confidence            94

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.60  E-value=2.8e-07  Score=72.81  Aligned_cols=97  Identities=23%  Similarity=0.218  Sum_probs=69.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+-+|..|.+.+.+|+++++.+.+.                                            
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------------------------------------------  188 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR--------------------------------------------  188 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC--------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC--------------------------------------------
Confidence            579999999999999999999999999999864220                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVC  161 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlA  161 (259)
                        .  .              ..+   ..+..++.+++  ++.+++++++...+ +...|.+.+. +++...+.+|.||+|
T Consensus       189 --~--~--------------~~~---~~~l~~~~gv~--i~~~~~v~~i~~~~-~v~~v~~~~~~~g~~~~i~~D~vi~a  244 (325)
T 2q7v_A          189 --A--N--------------KVA---QARAFANPKMK--FIWDTAVEEIQGAD-SVSGVKLRNLKTGEVSELATDGVFIF  244 (325)
T ss_dssp             --S--C--------------HHH---HHHHHTCTTEE--EECSEEEEEEEESS-SEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             --c--c--------------hHH---HHHHHhcCCce--EecCCceEEEccCC-cEEEEEEEECCCCcEEEEEcCEEEEc
Confidence              0  0              222   12222335888  89999999998743 4345666641 233457899999999


Q ss_pred             cCCCCCCc
Q 024975          162 NGHFSVPR  169 (259)
Q Consensus       162 tG~~s~~~  169 (259)
                      +|  ..|+
T Consensus       245 ~G--~~p~  250 (325)
T 2q7v_A          245 IG--HVPN  250 (325)
T ss_dssp             SC--EEES
T ss_pred             cC--CCCC
Confidence            99  4444

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.59  E-value=3.1e-07  Score=72.12  Aligned_cols=99  Identities=12%  Similarity=0.058  Sum_probs=69.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+|+|||+|+.|+.+|..|.+.+.+|+++++.+.+.    .                                       
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~----~---------------------------------------  180 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR----C---------------------------------------  180 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC----S---------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC----C---------------------------------------
Confidence            689999999999999999999999999998864220    0                                       


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVC  161 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlA  161 (259)
                           .              ..+.   ....++.+++  ++.++++.++...+++...+.+.+. +++...+.+|.||+|
T Consensus       181 -----~--------------~~~~---~~l~~~~gv~--v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a  236 (311)
T 2q0l_A          181 -----A--------------PITL---EHAKNNDKIE--FLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIF  236 (311)
T ss_dssp             -----C--------------HHHH---HHHHTCTTEE--EETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             -----C--------------HHHH---HHHhhCCCeE--EEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEE
Confidence                 0              2221   2222235888  8999999999876423234666531 233457899999999


Q ss_pred             cCCCCCCcc
Q 024975          162 NGHFSVPRL  170 (259)
Q Consensus       162 tG~~s~~~~  170 (259)
                      +|  ..|+.
T Consensus       237 ~G--~~p~~  243 (311)
T 2q0l_A          237 VG--YDVNN  243 (311)
T ss_dssp             SC--EEECC
T ss_pred             ec--CccCh
Confidence            99  44543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.58  E-value=3.6e-07  Score=72.47  Aligned_cols=99  Identities=17%  Similarity=0.206  Sum_probs=70.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+|+|||+|..|+-+|..|.+.+.+|+++++.+.+.                                            
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~--------------------------------------------  195 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR--------------------------------------------  195 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC--------------------------------------------
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC--------------------------------------------
Confidence            589999999999999999999999999999865320                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC-cE-EEEEEec-CCceEEEEeCEEE
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KW-KVKSRKK-DDVVEEETFDAVV  159 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~-~v~~~~g-~~~~~~~~ad~VI  159 (259)
                                       . ...+   ..+..++.+++  ++.+++++++...++. .. .+.+.+. ++....+.+|.||
T Consensus       196 -----------------~-~~~~---~~~~~~~~gv~--i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi  252 (333)
T 1vdc_A          196 -----------------A-SKIM---QQRALSNPKID--VIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLF  252 (333)
T ss_dssp             -----------------S-CHHH---HHHHHTCTTEE--EECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEE
T ss_pred             -----------------c-cHHH---HHHHHhCCCee--EecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEE
Confidence                             0 0111   12333456888  8999999999876421 33 3666542 2334579999999


Q ss_pred             EccCCCCCCcc
Q 024975          160 VCNGHFSVPRL  170 (259)
Q Consensus       160 lAtG~~s~~~~  170 (259)
                      +|+|  ..|+.
T Consensus       253 ~a~G--~~p~~  261 (333)
T 1vdc_A          253 FAIG--HEPAT  261 (333)
T ss_dssp             ECSC--EEESC
T ss_pred             EEeC--Cccch
Confidence            9999  44443

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.56  E-value=5.6e-07  Score=70.55  Aligned_cols=94  Identities=21%  Similarity=0.255  Sum_probs=68.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+|+|||+|+.|+-+|..|.+.+.+|+++++.+.+.                                            
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------------------------------------------  180 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK--------------------------------------------  180 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC--------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC--------------------------------------------
Confidence            589999999999999999999999999999864220                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEE
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV  160 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIl  160 (259)
                        .  .              .    .+.+.+.+ .+++  ++.+++++++...++....+.+.+. +++...+.+|.||+
T Consensus       181 --~--~--------------~----~~~~~l~~~~gv~--v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~  236 (310)
T 1fl2_A          181 --A--D--------------Q----VLQDKLRSLKNVD--IILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFV  236 (310)
T ss_dssp             --S--C--------------H----HHHHHHHTCTTEE--EESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             --c--c--------------H----HHHHHHhhCCCeE--EecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEE
Confidence              0  0              1    22333344 5888  9999999999875422235666653 24446789999999


Q ss_pred             ccCC
Q 024975          161 CNGH  164 (259)
Q Consensus       161 AtG~  164 (259)
                      |+|.
T Consensus       237 a~G~  240 (310)
T 1fl2_A          237 QIGL  240 (310)
T ss_dssp             CSCE
T ss_pred             eeCC
Confidence            9993

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.55  E-value=6.3e-07  Score=70.57  Aligned_cols=97  Identities=20%  Similarity=0.210  Sum_probs=71.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+.+|..|.+.+.+|+++++.+.+.                                            
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~--------------------------------------------  190 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK--------------------------------------------  190 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCC--------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCC--------------------------------------------
Confidence            679999999999999999999999999999865320                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVC  161 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlA  161 (259)
                       +                 ...   ++.+..++.+++  ++.++++.++...+ +...+.+.+. +++...+.+|.||+|
T Consensus       191 -~-----------------~~~---~~~~~~~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~~~~D~vv~a  246 (323)
T 3f8d_A          191 -A-----------------QPI---YVETVKKKPNVE--FVLNSVVKEIKGDK-VVKQVVVENLKTGEIKELNVNGVFIE  246 (323)
T ss_dssp             -S-----------------CHH---HHHHHHTCTTEE--EECSEEEEEEEESS-SEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             -c-----------------CHH---HHHHHHhCCCcE--EEeCCEEEEEeccC-ceeEEEEEECCCCceEEEEcCEEEEE
Confidence             0                 022   223333345888  99999999998763 5556777762 233457899999999


Q ss_pred             cCCCCCCc
Q 024975          162 NGHFSVPR  169 (259)
Q Consensus       162 tG~~s~~~  169 (259)
                      +|  ..|+
T Consensus       247 ~G--~~p~  252 (323)
T 3f8d_A          247 IG--FDPP  252 (323)
T ss_dssp             CC--EECC
T ss_pred             EC--CCCC
Confidence            99  4444

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.55  E-value=8.4e-08  Score=77.13  Aligned_cols=34  Identities=29%  Similarity=0.468  Sum_probs=32.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++||+|||||++|+++|++|+++|.+|+|+|+..
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            4799999999999999999999999999999976

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.54  E-value=5.3e-08  Score=81.70  Aligned_cols=40  Identities=43%  Similarity=0.638  Sum_probs=37.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCcee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW   41 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~   41 (259)
                      ++||+|||||++||++|..|.+.|.+|+|+|+.+.+||.+
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~   72 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRV   72 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCce
Confidence            4799999999999999999999999999999999999875

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.53  E-value=6.5e-08  Score=79.65  Aligned_cols=43  Identities=19%  Similarity=0.264  Sum_probs=39.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~   44 (259)
                      .+||+|||+|++|+++|..|.+.|.+|+|+|+++.+||.+...
T Consensus         6 ~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~   48 (433)
T 1d5t_A            6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI   48 (433)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcccccccc
Confidence            4799999999999999999999999999999999999886543

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.52  E-value=6.6e-07  Score=70.49  Aligned_cols=94  Identities=14%  Similarity=0.108  Sum_probs=68.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+-+|..|.+.+.+|+++++.+.+.                                            
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~--------------------------------------------  191 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM--------------------------------------------  191 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC--------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC--------------------------------------------
Confidence            579999999999999999999999999999864220                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEEc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVC  161 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIlA  161 (259)
                        .                ...+    .+.+.+.+++  ++++++|+++...++....+.+.+. ++....+.+|.||+|
T Consensus       192 --~----------------~~~l----~~~l~~~gv~--i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a  247 (319)
T 3cty_A          192 --C----------------ENAY----VQEIKKRNIP--YIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIY  247 (319)
T ss_dssp             --S----------------CHHH----HHHHHHTTCC--EECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEEC
T ss_pred             --C----------------CHHH----HHHHhcCCcE--EEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEe
Confidence              0                0222    2333467999  9999999999876422335666531 233457899999999


Q ss_pred             cCC
Q 024975          162 NGH  164 (259)
Q Consensus       162 tG~  164 (259)
                      +|.
T Consensus       248 ~G~  250 (319)
T 3cty_A          248 VGL  250 (319)
T ss_dssp             CCE
T ss_pred             eCC
Confidence            994

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.51  E-value=7.4e-08  Score=78.02  Aligned_cols=86  Identities=13%  Similarity=0.193  Sum_probs=68.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      ++++|||+|+.|+.+|..|.+.|.+|+++|+.+.+...                                          
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~------------------------------------------  184 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLER------------------------------------------  184 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh------------------------------------------
Confidence            57999999999999999999999999999997643100                                          


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                                     .+.  .++..++.+.+++.|++  ++.++++.++              +    ..+.+|.||+|+
T Consensus       185 ---------------~~~--~~~~~~~~~~l~~~gV~--~~~~~~v~~i--------------g----~~~~~D~vv~a~  227 (385)
T 3klj_A          185 ---------------QLD--RDGGLFLKDKLDRLGIK--IYTNSNFEEM--------------G----DLIRSSCVITAV  227 (385)
T ss_dssp             ---------------TSC--HHHHHHHHHHHHTTTCE--EECSCCGGGC--------------H----HHHHHSEEEECC
T ss_pred             ---------------hcC--HHHHHHHHHHHHhCCCE--EEeCCEEEEc--------------C----eEEecCeEEECc
Confidence                           001  67778888888888999  8888877665              2    268899999999


Q ss_pred             CCCCCCc
Q 024975          163 GHFSVPR  169 (259)
Q Consensus       163 G~~s~~~  169 (259)
                      |  ..|+
T Consensus       228 G--~~p~  232 (385)
T 3klj_A          228 G--VKPN  232 (385)
T ss_dssp             C--EEEC
T ss_pred             C--cccC
Confidence            9  4554

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.50  E-value=8.7e-08  Score=79.14  Aligned_cols=42  Identities=19%  Similarity=0.343  Sum_probs=38.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      .+||+|||+|++|+++|..|++.|.+|+++|+++.+||.+..
T Consensus        20 ~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s   61 (475)
T 3p1w_A           20 HYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETAS   61 (475)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccc
Confidence            379999999999999999999999999999999999987643

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.47  E-value=4e-07  Score=72.32  Aligned_cols=99  Identities=16%  Similarity=0.163  Sum_probs=69.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+|+|||+|+.|+-+|..|.+.+.+|+++++.+.+.                                           
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~-------------------------------------------  191 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR-------------------------------------------  191 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS-------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC-------------------------------------------
Confidence            3689999999999999999999999999999864220                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIl  160 (259)
                         .  .              ..+   ..+..++.+++  ++.+++|+++...+ +...+.+.+. ++....+.+|.||+
T Consensus       192 ---~--~--------------~~~---~~~~~~~~gV~--v~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~  246 (335)
T 2a87_A          192 ---A--S--------------KIM---LDRARNNDKIR--FLTNHTVVAVDGDT-TVTGLRVRDTNTGAETTLPVTGVFV  246 (335)
T ss_dssp             ---S--C--------------TTH---HHHHHHCTTEE--EECSEEEEEEECSS-SCCEEEEEEETTSCCEEECCSCEEE
T ss_pred             ---c--c--------------HHH---HHHHhccCCcE--EEeCceeEEEecCC-cEeEEEEEEcCCCceEEeecCEEEE
Confidence               0  0              111   11233457888  89999999998654 3334555532 23335789999999


Q ss_pred             ccCCCCCCcc
Q 024975          161 CNGHFSVPRL  170 (259)
Q Consensus       161 AtG~~s~~~~  170 (259)
                      |+|  ..|+.
T Consensus       247 a~G--~~p~~  254 (335)
T 2a87_A          247 AIG--HEPRS  254 (335)
T ss_dssp             CSC--EEECC
T ss_pred             ccC--CccCh
Confidence            999  45543

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.46  E-value=1.2e-06  Score=69.31  Aligned_cols=93  Identities=16%  Similarity=0.110  Sum_probs=70.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+.+|..|.+.+.+|+++++.+.+.                                            
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~--------------------------------------------  190 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFR--------------------------------------------  190 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCS--------------------------------------------
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCC--------------------------------------------
Confidence            579999999999999999999999999998864320                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEEc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVC  161 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIlA  161 (259)
                       +.                 ...    .+.+.+.+++  ++.++++.++...+ +...+.+.++. ++...+.+|.||+|
T Consensus       191 -~~-----------------~~~----~~~l~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~~~~D~vv~a  245 (332)
T 3lzw_A          191 -AH-----------------EHS----VENLHASKVN--VLTPFVPAELIGED-KIEQLVLEEVKGDRKEILEIDDLIVN  245 (332)
T ss_dssp             -SC-----------------HHH----HHHHHHSSCE--EETTEEEEEEECSS-SCCEEEEEETTSCCEEEEECSEEEEC
T ss_pred             -cc-----------------HHH----HHHHhcCCeE--EEeCceeeEEecCC-ceEEEEEEecCCCceEEEECCEEEEe
Confidence             00                 111    1224567998  99999999998765 45667777633 44567999999999


Q ss_pred             cCC
Q 024975          162 NGH  164 (259)
Q Consensus       162 tG~  164 (259)
                      +|.
T Consensus       246 ~G~  248 (332)
T 3lzw_A          246 YGF  248 (332)
T ss_dssp             CCE
T ss_pred             ecc
Confidence            994

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.44  E-value=1.5e-07  Score=78.48  Aligned_cols=41  Identities=27%  Similarity=0.504  Sum_probs=37.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCCcCceee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWI   42 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~~gg~~~   42 (259)
                      .+||+|||||++|+++|..|.+.|. +|+|+|+.+.+||.+.
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~   45 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMH   45 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCcee
Confidence            5799999999999999999999998 8999999999987653

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.39  E-value=2.4e-07  Score=80.28  Aligned_cols=40  Identities=33%  Similarity=0.544  Sum_probs=37.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCcee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW   41 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~   41 (259)
                      .+||+|||||++|+++|..|.+.|++|+|+|+.+.+||.+
T Consensus       107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~  146 (662)
T 2z3y_A          107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV  146 (662)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence            4799999999999999999999999999999999998754

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.38  E-value=3.8e-07  Score=72.79  Aligned_cols=37  Identities=35%  Similarity=0.460  Sum_probs=34.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG   38 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g   38 (259)
                      |+||+|||||++|+.+|..|++.|.+|+|+|+.+..+
T Consensus         1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~   37 (443)
T 3g5s_A            1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRM   37 (443)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSC
T ss_pred             CCCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcC
Confidence            5899999999999999999999999999999987554

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.37  E-value=2.8e-06  Score=66.65  Aligned_cols=33  Identities=21%  Similarity=0.468  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+++|||+|..|+-+|..|.+.|.+|+++++.+
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~  185 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRD  185 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeecccc
Confidence            689999999999999999999999999999753

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.37  E-value=3e-07  Score=81.25  Aligned_cols=40  Identities=33%  Similarity=0.544  Sum_probs=37.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCcee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW   41 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~   41 (259)
                      .++|+|||||++||++|+.|.++|++|+|||+.+.+||.+
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~  317 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV  317 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCce
Confidence            4799999999999999999999999999999999998753

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.34  E-value=7.8e-07  Score=69.17  Aligned_cols=84  Identities=14%  Similarity=0.052  Sum_probs=63.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      ..+++|||+|+.|+.+|..|.+.| +|+++++.+.                                             
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~---------------------------------------------  174 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV---------------------------------------------  174 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC---------------------------------------------
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC---------------------------------------------
Confidence            368999999999999999999999 9999987531                                             


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                                            .+...+.+.+.+.+++  ++. ++|.++...   . .+.+.++.    .+.+|.||+|
T Consensus       175 ----------------------~~~~~~~~~l~~~gv~--i~~-~~v~~i~~~---~-~v~~~~g~----~~~~D~vi~a  221 (297)
T 3fbs_A          175 ----------------------EPDADQHALLAARGVR--VET-TRIREIAGH---A-DVVLADGR----SIALAGLFTQ  221 (297)
T ss_dssp             ----------------------CCCHHHHHHHHHTTCE--EEC-SCEEEEETT---E-EEEETTSC----EEEESEEEEC
T ss_pred             ----------------------CCCHHHHHHHHHCCcE--EEc-ceeeeeecC---C-eEEeCCCC----EEEEEEEEEc
Confidence                                  0002334556677898  764 788887632   2 66666654    7999999999


Q ss_pred             cCC
Q 024975          162 NGH  164 (259)
Q Consensus       162 tG~  164 (259)
                      +|.
T Consensus       222 ~G~  224 (297)
T 3fbs_A          222 PKL  224 (297)
T ss_dssp             CEE
T ss_pred             cCc
Confidence            994

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.31  E-value=6.6e-06  Score=71.72  Aligned_cols=97  Identities=23%  Similarity=0.165  Sum_probs=69.7

Q ss_pred             CeEEEEC--CChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            3 RHVAVIG--AGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         3 ~~v~IIG--~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      .+|+|||  +|..|+.+|..|.+.|.+|+++++.+.+.....                                      
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~--------------------------------------  565 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTN--------------------------------------  565 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGG--------------------------------------
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccc--------------------------------------
Confidence            4699999  999999999999999999999998754311000                                      


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                             .              ..+...+.+.+++.+++  ++.+++|+++..   +...+.... ++....+.+|.||+
T Consensus       566 -------~--------------~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~---~~~~v~~~~-~~~~~~i~aD~VV~  618 (690)
T 3k30_A          566 -------N--------------TFEVNRIQRRLIENGVA--RVTDHAVVAVGA---GGVTVRDTY-ASIERELECDAVVM  618 (690)
T ss_dssp             -------G--------------GTCHHHHHHHHHHTTCE--EEESEEEEEEET---TEEEEEETT-TCCEEEEECSEEEE
T ss_pred             -------c--------------chhHHHHHHHHHHCCCE--EEcCcEEEEEEC---CeEEEEEcc-CCeEEEEECCEEEE
Confidence                   0              22235566677788999  999999999873   233333221 12235789999999


Q ss_pred             ccCC
Q 024975          161 CNGH  164 (259)
Q Consensus       161 AtG~  164 (259)
                      |+|.
T Consensus       619 A~G~  622 (690)
T 3k30_A          619 VTAR  622 (690)
T ss_dssp             ESCE
T ss_pred             CCCC
Confidence            9993

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.30  E-value=3.9e-06  Score=70.71  Aligned_cols=94  Identities=21%  Similarity=0.281  Sum_probs=69.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+|+|||+|..|+-+|..|++.+.+|+++++.+.+.                                            
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~--------------------------------------------  391 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK--------------------------------------------  391 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC--------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC--------------------------------------------
Confidence            589999999999999999999999999998864320                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCCCcEEEEEEec-CCceEEEEeCEEEE
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV  160 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~ad~VIl  160 (259)
                                       +  .   ..+.+.+.+ .+++  ++.+++++++..+++....+.+.+. +++...+.+|.||+
T Consensus       392 -----------------~--~---~~l~~~l~~~~gV~--v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~  447 (521)
T 1hyu_A          392 -----------------A--D---QVLQDKVRSLKNVD--IILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFV  447 (521)
T ss_dssp             -----------------S--C---HHHHHHHTTCTTEE--EECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             -----------------c--C---HHHHHHHhcCCCcE--EEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEE
Confidence                             0  0   123334444 4788  9999999999875423235666653 24456789999999


Q ss_pred             ccCC
Q 024975          161 CNGH  164 (259)
Q Consensus       161 AtG~  164 (259)
                      |+|.
T Consensus       448 a~G~  451 (521)
T 1hyu_A          448 QIGL  451 (521)
T ss_dssp             CCCE
T ss_pred             CcCC
Confidence            9993

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=98.12  E-value=1.1e-06  Score=75.92  Aligned_cols=35  Identities=31%  Similarity=0.471  Sum_probs=33.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcC--------CcEEEEeeCC-Cc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREG--------HTVVVYEKGE-QV   37 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g--------~~v~v~e~~~-~~   37 (259)
                      ++|+|||||++||++|+.|.+.|        ++|+|||+++ .+
T Consensus        57 ~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           57 YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            68999999999999999999998        9999999998 88

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.12  E-value=3.3e-05  Score=60.53  Aligned_cols=34  Identities=21%  Similarity=0.393  Sum_probs=31.5

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      ++++|||||+.|+-+|..|.+.|.+|+|+++.+.
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  179 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDE  179 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEecccc
Confidence            6899999999999999999999999999998653

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.09  E-value=2.9e-06  Score=71.92  Aligned_cols=35  Identities=26%  Similarity=0.552  Sum_probs=33.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .+|++|||+|++|+.+|.+|.+.|.+|+|+|+++.
T Consensus         7 ~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            7 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             ceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            58999999999999999999999999999999864

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.05  E-value=2.4e-05  Score=70.71  Aligned_cols=94  Identities=17%  Similarity=0.141  Sum_probs=69.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||+|+.|+-+|..|.+.|.+|+|+|+.+.+.                                            
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~--------------------------------------------  320 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS--------------------------------------------  320 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC--------------------------------------------
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc--------------------------------------------
Confidence            579999999999999999999999999999964220                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEe-CCCcEEEEEEe--c---CCceEEEEeC
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV-ESNKWKVKSRK--K---DDVVEEETFD  156 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~-~~~~~~v~~~~--g---~~~~~~~~ad  156 (259)
                                          ..     .+.+++.|++  ++.++.|+++... +++...|.+.+  .   +++...+.+|
T Consensus       321 --------------------~~-----~~~l~~~GV~--v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D  373 (965)
T 2gag_A          321 --------------------AA-----AAQAVADGVQ--VISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEAD  373 (965)
T ss_dssp             --------------------HH-----HHHHHHTTCC--EEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECS
T ss_pred             --------------------hh-----HHHHHhCCeE--EEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcC
Confidence                                11     2345677999  9999999999874 22333455553  1   1223579999


Q ss_pred             EEEEccCCCCCCc
Q 024975          157 AVVVCNGHFSVPR  169 (259)
Q Consensus       157 ~VIlAtG~~s~~~  169 (259)
                      .||+|+|  ..|+
T Consensus       374 ~Vv~a~G--~~P~  384 (965)
T 2gag_A          374 VLAVAGG--FNPV  384 (965)
T ss_dssp             EEEEECC--EEEC
T ss_pred             EEEECCC--cCcC
Confidence            9999999  4454

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.00  E-value=5.5e-05  Score=62.30  Aligned_cols=55  Identities=13%  Similarity=0.007  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCc---eEEEEeCEEEEccCC
Q 024975          105 VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV---VEEETFDAVVVCNGH  164 (259)
Q Consensus       105 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~---~~~~~ad~VIlAtG~  164 (259)
                      ....+.+.+++.+++  ++.+++|++++.   +...+.....++.   ...+.+|.|++|+|.
T Consensus       210 ~~~~~~~~l~~~gI~--~~~~~~v~~v~~---~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~  267 (437)
T 3sx6_A          210 SKGILTKGLKEEGIE--AYTNCKVTKVED---NKMYVTQVDEKGETIKEMVLPVKFGMMIPAF  267 (437)
T ss_dssp             HHHHHHHHHHHTTCE--EECSEEEEEEET---TEEEEEEECTTSCEEEEEEEECSEEEEECCE
T ss_pred             HHHHHHHHHHHCCCE--EEcCCEEEEEEC---CeEEEEecccCCccccceEEEEeEEEEcCCC
Confidence            456777788888999  999999999863   3344443222221   357999999999984

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.99  E-value=6.2e-06  Score=72.30  Aligned_cols=33  Identities=15%  Similarity=0.249  Sum_probs=30.9

Q ss_pred             CeEEEEC--CChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIG--AGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG--~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|+|||  +|..|+-+|..|.+.|.+|+++++.+
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            5899999  99999999999999999999999975

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.97  E-value=2.7e-05  Score=67.73  Aligned_cols=55  Identities=16%  Similarity=0.160  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCc
Q 024975          105 VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       105 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~  169 (259)
                      ...++.+.+++.|++  ++.+++|+++.  + +...+. .+  ++...+.+|.||+|+|  ..|+
T Consensus       575 ~~~~~~~~l~~~GV~--v~~~~~v~~i~--~-~~v~~~-~~--G~~~~i~~D~Vi~a~G--~~p~  629 (671)
T 1ps9_A          575 TGWIHRTTLLSRGVK--MIPGVSYQKID--D-DGLHVV-IN--GETQVLAVDNVVICAG--QEPN  629 (671)
T ss_dssp             THHHHHHHHHHTTCE--EECSCEEEEEE--T-TEEEEE-ET--TEEEEECCSEEEECCC--EEEC
T ss_pred             cHHHHHHHHHhcCCE--EEeCcEEEEEe--C-CeEEEe-cC--CeEEEEeCCEEEECCC--cccc
Confidence            344566677788999  99999999886  2 334443 33  3335799999999999  4443

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.96  E-value=4.2e-05  Score=63.31  Aligned_cols=34  Identities=32%  Similarity=0.464  Sum_probs=29.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHc--------------------CC-cEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE--------------------GH-TVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~--------------------g~-~v~v~e~~~~   36 (259)
                      .+|+|||+|..|+-+|..|.+.                    +. +|+|+++.+.
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~  202 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP  202 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence            5799999999999999999874                    54 8999998753

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.96  E-value=7.4e-06  Score=69.95  Aligned_cols=41  Identities=27%  Similarity=0.454  Sum_probs=38.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCcee
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW   41 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~   41 (259)
                      |.||++|||+|..|..+|..|++.|.+|+++|++++.||.|
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~   47 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNW   47 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGG
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCcc
Confidence            35899999999999999999999999999999999999875

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.95  E-value=4e-06  Score=70.83  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=32.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV   37 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~   37 (259)
                      .||++|||+|++|+.+|.+|++ +.+|+|+|+++..
T Consensus        26 ~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~   60 (536)
T 1ju2_A           26 SYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred             cccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence            3799999999999999999999 9999999998654

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.94  E-value=3.8e-05  Score=63.73  Aligned_cols=34  Identities=12%  Similarity=0.173  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .++|+|||+|.+|+-+|..|.+.+.+|+++++.+
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~  230 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRT  230 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECC
Confidence            3689999999999999999999999999999864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.94  E-value=6.8e-05  Score=62.12  Aligned_cols=34  Identities=24%  Similarity=0.331  Sum_probs=29.8

Q ss_pred             CeEEEECCChHHHHHHHHHH--------------------HcCC-cEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELL--------------------REGH-TVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~--------------------~~g~-~v~v~e~~~~   36 (259)
                      .+|+|||+|..|+-+|..|.                    +.+. +|+|+++.+.
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            58999999999999999999                    5677 7999998753

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.93  E-value=2.3e-05  Score=64.85  Aligned_cols=33  Identities=24%  Similarity=0.493  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ++|+|||+|..|+-+|..+.+.|. +|+++++.+
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~  298 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRD  298 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCC
Confidence            579999999999999999999997 599998864

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.91  E-value=1.9e-05  Score=66.70  Aligned_cols=35  Identities=34%  Similarity=0.417  Sum_probs=32.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .++|+|||+|..|+.+|..|.+.+.+|+++++.+.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            36899999999999999999999999999999865

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.87  E-value=1.4e-05  Score=67.11  Aligned_cols=37  Identities=24%  Similarity=0.336  Sum_probs=33.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG   38 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g   38 (259)
                      .+|++|||+|++|+.+|.+|.+.|.+|+|+|++...+
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            4799999999999999999999999999999987543

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.87  E-value=5.7e-06  Score=70.15  Aligned_cols=37  Identities=35%  Similarity=0.377  Sum_probs=33.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHH-cCCcEEEEeeCCCc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQV   37 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~-~g~~v~v~e~~~~~   37 (259)
                      +.||++|||||.+|+.+|.+|++ .+.+|+|+|+++..
T Consensus         1 ~~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            1 ADFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             -CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CCcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            36899999999999999999998 68999999998654

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.83  E-value=0.00014  Score=66.23  Aligned_cols=33  Identities=27%  Similarity=0.346  Sum_probs=30.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      .+|+|||||..|+-+|..|.+.|. +|+++++.+
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            489999999999999999999996 899999864

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.79  E-value=1.9e-05  Score=66.24  Aligned_cols=35  Identities=29%  Similarity=0.374  Sum_probs=32.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .+|++|||+|++|+.+|.+|.+.+.+|+|+|++..
T Consensus        11 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A           11 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            47999999999999999999999999999999864

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.74  E-value=1.9e-05  Score=66.82  Aligned_cols=36  Identities=28%  Similarity=0.377  Sum_probs=33.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc-CCcEEEEeeCCCc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQV   37 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~-g~~v~v~e~~~~~   37 (259)
                      .+|++|||+|++|+.+|.+|.+. +.+|+|+|+....
T Consensus        13 ~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            48999999999999999999998 8999999998654

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.72  E-value=2.8e-05  Score=66.44  Aligned_cols=36  Identities=31%  Similarity=0.353  Sum_probs=33.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHH-cCCcEEEEeeCCCc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQV   37 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~-~g~~v~v~e~~~~~   37 (259)
                      .+|++|||+|++|+.+|.+|.+ .+.+|+|+|++...
T Consensus        24 ~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            3799999999999999999999 79999999998654

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.72  E-value=9.9e-05  Score=60.95  Aligned_cols=33  Identities=15%  Similarity=0.133  Sum_probs=30.5

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCc-EEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~-v~v~e~~~   35 (259)
                      ++|+|||+|.+|+-+|..|.+.+.+ |+++++.+
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~  246 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG  246 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence            6799999999999999999999998 99998864

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.66  E-value=0.00021  Score=58.21  Aligned_cols=52  Identities=8%  Similarity=0.122  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHF  165 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~  165 (259)
                      ..+.+.+.+.+++.|++  ++.+++|++++.   +.  +.++++.    .+.+|.||+|+|..
T Consensus       218 ~~~~~~~~~~l~~~gV~--~~~~~~v~~i~~---~~--v~~~~g~----~~~~D~vi~a~G~~  269 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIK--LVHNFKIKEIRE---HE--IVDEKGN----TIPADITILLPPYT  269 (409)
T ss_dssp             HHHHHHHHHHHHHHTCE--EECSCCEEEECS---SE--EEETTSC----EEECSEEEEECCEE
T ss_pred             HHHHHHHHHHHHHCCCE--EEcCCceEEECC---Ce--EEECCCC----EEeeeEEEECCCCC
Confidence            66778888888899999  999999998863   22  5566654    79999999999953

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.66  E-value=6e-05  Score=59.97  Aligned_cols=31  Identities=23%  Similarity=0.286  Sum_probs=28.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      .+|+|||+|..|+-+|..|.+.+ +|+++.+.
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~  194 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTVA-ETTWITQH  194 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTS-EEEEECSS
T ss_pred             CEEEEECCCcCHHHHHHHHHhhC-CEEEEECC
Confidence            68999999999999999999998 79999886

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.38  E-value=0.00024  Score=48.63  Aligned_cols=34  Identities=32%  Similarity=0.408  Sum_probs=31.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+++|+|+|..|..+|..|.+.|.+|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4689999999999999999999999999999974

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.38  E-value=0.00027  Score=48.34  Aligned_cols=34  Identities=29%  Similarity=0.531  Sum_probs=31.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..+|+|+|+|..|..+|..|.+.|.+|+++|+++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4679999999999999999999999999999975

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.35  E-value=0.00023  Score=46.88  Aligned_cols=35  Identities=26%  Similarity=0.369  Sum_probs=31.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcC-CcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~   35 (259)
                      |+++|+|+|+|..|..++..|.+.| .+|+++++++
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            3568999999999999999999999 8999999864

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.30  E-value=0.00035  Score=48.66  Aligned_cols=33  Identities=30%  Similarity=0.584  Sum_probs=31.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|+|+|+|..|..+|..|.+.|.+|+++|+++
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999864

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.14  E-value=0.00033  Score=50.03  Aligned_cols=32  Identities=28%  Similarity=0.213  Sum_probs=30.5

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +++|||+|++|+++|..|.+.+.+|+++++.+
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            69999999999999999999999999999986

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.13  E-value=0.00067  Score=46.09  Aligned_cols=33  Identities=21%  Similarity=0.485  Sum_probs=30.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++|+|||+|..|..+|..|.+.|.+|+++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999864

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=97.10  E-value=0.0013  Score=51.21  Aligned_cols=32  Identities=13%  Similarity=0.200  Sum_probs=25.3

Q ss_pred             CeEEEECCCh-HHHHHHHHHHHcCCcEEEEeeC
Q 024975            3 RHVAVIGAGA-AGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~G~-~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      .+++|||+|. .++.+|..+.+.+.+|+++++.
T Consensus       147 ~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~  179 (304)
T 4fk1_A          147 QPLIIISENEDHTLHMTKLVYNWSTDLVIATNG  179 (304)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTCSCEEEECSS
T ss_pred             CceeeecCCCchhhhHHHHHHhCCceEEEEecc
Confidence            4678888775 5678888888889999998774

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.09  E-value=0.00062  Score=46.48  Aligned_cols=34  Identities=38%  Similarity=0.502  Sum_probs=31.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+|+|+|+|..|..++..|.+.|.+|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4579999999999999999999999999999863

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.06  E-value=0.001  Score=46.21  Aligned_cols=33  Identities=21%  Similarity=0.189  Sum_probs=30.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      ..+++|+|+|..|..++..|.+.|.+|+++|++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            357999999999999999999999999999996

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.05  E-value=0.0046  Score=51.77  Aligned_cols=33  Identities=18%  Similarity=0.384  Sum_probs=29.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~   35 (259)
                      ++|+|||+|.+|.-++..|++.  +.+|+++-+.+
T Consensus       247 KrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~  281 (501)
T 4b63_A          247 YNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDS  281 (501)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSS
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence            6799999999999999999875  67899998864

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.05  E-value=0.00069  Score=53.26  Aligned_cols=35  Identities=37%  Similarity=0.571  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |+++|+|||+|.-|.+.|..|.+.|.+|+++++++
T Consensus         1 M~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            1 MSLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             --CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            67899999999999999999999999999999975

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.92  E-value=0.00078  Score=52.76  Aligned_cols=35  Identities=37%  Similarity=0.545  Sum_probs=30.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |+++|+|||+|.-|.+.|..|.+.|.+|+++++++
T Consensus         1 M~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            1 MSLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             ---CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            66899999999999999999999999999999965

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=96.84  E-value=0.0058  Score=50.06  Aligned_cols=55  Identities=13%  Similarity=0.060  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGH  164 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~  164 (259)
                      ....+++.+.+++.|++  ++.++.|++++.   +.  +.+++.++....+.+|.||+|+|.
T Consensus       200 ~~~~~~l~~~l~~~GV~--~~~~~~v~~v~~---~~--~~~~~~~g~~~~i~~d~vi~~~G~  254 (430)
T 3hyw_A          200 GASKRLVEDLFAERNID--WIANVAVKAIEP---DK--VIYEDLNGNTHEVPAKFTMFMPSF  254 (430)
T ss_dssp             TTHHHHHHHHHHHTTCE--EECSCEEEEECS---SE--EEEECTTSCEEEEECSEEEEECEE
T ss_pred             HHHHHHHHHHHHhCCeE--EEeCceEEEEeC---Cc--eEEEeeCCCceEeecceEEEeccC
Confidence            45667788888889999  999999998853   32  344444444568999999999995

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=96.83  E-value=0.0011  Score=51.50  Aligned_cols=35  Identities=29%  Similarity=0.365  Sum_probs=31.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |+++|+|||+|.-|.+.|..|.+.|.+|++++++.
T Consensus         1 M~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            1 MSLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            66899999999999999999999999999999974

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.81  E-value=0.0015  Score=46.70  Aligned_cols=33  Identities=27%  Similarity=0.315  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHc-CCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~-g~~v~v~e~~~   35 (259)
                      .+|+|+|+|..|..+|..|.+. |.+|+++|+++
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            4799999999999999999999 99999999974

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.71  E-value=0.0018  Score=53.39  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=32.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |+++|.|||+|..|+.+|..|++.|++|+++|+++
T Consensus         1 M~mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            1 MSLDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            55799999999999999999999999999999974

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=96.69  E-value=0.0022  Score=51.27  Aligned_cols=35  Identities=20%  Similarity=0.376  Sum_probs=32.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      |++|+|||||..|..++..+.+.|++++++|.++.
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            68999999999999999999999999999998753

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.64  E-value=0.0019  Score=47.73  Aligned_cols=32  Identities=22%  Similarity=0.384  Sum_probs=30.5

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +|+|+|+|..|..+|..|.+.|.+|+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            69999999999999999999999999999875

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.63  E-value=0.0022  Score=50.12  Aligned_cols=35  Identities=29%  Similarity=0.392  Sum_probs=31.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +|.+|+|||+|..|...|..|.+.|.+|+++++++
T Consensus         2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            2 NAMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            35689999999999999999999999999999863

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.61  E-value=0.0023  Score=52.85  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=31.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++|+|||.|.+|+++|..|.++|.+|+++|...
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            689999999999999999999999999999964

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.58  E-value=0.0028  Score=49.30  Aligned_cols=34  Identities=38%  Similarity=0.620  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+|.|||+|.-|..+|..|.+.|++|+++|+++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4679999999999999999999999999999864

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.56  E-value=0.0029  Score=46.69  Aligned_cols=33  Identities=27%  Similarity=0.337  Sum_probs=30.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      .+.|+|||||..|...+..|.+.|.+|+|+++.
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            368999999999999999999999999999985

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.56  E-value=0.003  Score=48.67  Aligned_cols=33  Identities=24%  Similarity=0.467  Sum_probs=31.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|.|||+|.-|...|..|++.|++|+++|+++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            689999999999999999999999999999874

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.53  E-value=0.0032  Score=49.21  Aligned_cols=35  Identities=29%  Similarity=0.436  Sum_probs=31.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      |+.+|+|||+|..|..+|..|...|. +++++|.++
T Consensus         1 M~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            1 MRKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            56799999999999999999999986 999999864

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.53  E-value=0.0033  Score=50.62  Aligned_cols=33  Identities=30%  Similarity=0.335  Sum_probs=31.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|+|||+|+.|+.+|..|...|.+|+++|+++
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            589999999999999999999999999999975

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=96.52  E-value=0.0028  Score=49.49  Aligned_cols=34  Identities=29%  Similarity=0.429  Sum_probs=31.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |+++|+|||+|.-|.+.|..|. .|.+|+++++++
T Consensus         1 M~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            1 MSLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            6789999999999999999999 999999999874

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=96.51  E-value=0.0014  Score=49.73  Aligned_cols=32  Identities=25%  Similarity=0.417  Sum_probs=30.6

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .|+|||+|++|+-+|..|.+.|.+|+++.+.+
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            59999999999999999999999999999887

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.51  E-value=0.0037  Score=49.21  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=31.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~   36 (259)
                      +.+|+|||+|..|.++|..|++.|+ +|+++|.++.
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG   49 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            4589999999999999999999998 9999999754

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.48  E-value=0.0039  Score=45.72  Aligned_cols=35  Identities=29%  Similarity=0.551  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      +.+|.|||+|..|.++|..|.+.|.+|+++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46799999999999999999999999999998753

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.47  E-value=0.0029  Score=48.27  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+.|+|||+|..|...+..|.+.|.+|+|+++..
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            3679999999999999999999999999999864

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.46  E-value=0.0034  Score=49.21  Aligned_cols=34  Identities=29%  Similarity=0.439  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      +.+|+|||+|..|.++|..|.+.|.  +|+++|++.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999999998  999999874

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=96.45  E-value=0.0023  Score=52.63  Aligned_cols=35  Identities=29%  Similarity=0.340  Sum_probs=31.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .++|+|||.|.+|+++|..|.++|++|+++|....
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~   39 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSS
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCC
Confidence            36799999999999999999999999999998754

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=96.45  E-value=0.0035  Score=49.54  Aligned_cols=35  Identities=29%  Similarity=0.482  Sum_probs=31.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |+.+|.|||+|.-|.+.|..|.+.|.+|+++++.+
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            56899999999999999999999999999999863

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.40  E-value=0.004  Score=48.65  Aligned_cols=33  Identities=21%  Similarity=0.354  Sum_probs=31.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|+|||+|.-|...|..++..|++|+++|.++
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.36  E-value=0.0039  Score=47.90  Aligned_cols=36  Identities=17%  Similarity=0.285  Sum_probs=32.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      ||++|+|.|+|..|..++..|.+.|.+|+++.+++.
T Consensus         4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (286)
T 3ius_A            4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPD   39 (286)
T ss_dssp             -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChh
Confidence            578999999999999999999999999999998753

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.34  E-value=0.0038  Score=49.85  Aligned_cols=33  Identities=27%  Similarity=0.330  Sum_probs=31.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|+|||+|..|+.+|..|...|.+|+++|+++
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999999999999999999999999999974

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=96.33  E-value=0.0023  Score=47.69  Aligned_cols=32  Identities=25%  Similarity=0.204  Sum_probs=30.3

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~  229 (259)
                      .+|+|||+|++|+++|..|.+.+.+|+++++.
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~   35 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQS   35 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecC
Confidence            46999999999999999999999999999997

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.33  E-value=0.0048  Score=48.66  Aligned_cols=34  Identities=29%  Similarity=0.393  Sum_probs=31.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~   36 (259)
                      .+|+|||+|..|.++|..|++.|+ +|+++|.++.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~   44 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   44 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            589999999999999999999998 9999999753

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.33  E-value=0.0035  Score=49.13  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=32.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcC-CcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~   35 (259)
                      |+.+|.|||+|.-|..+|..|.+.| .+|+++|+++
T Consensus        23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            4578999999999999999999999 9999999974

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.32  E-value=0.0015  Score=48.17  Aligned_cols=40  Identities=10%  Similarity=0.195  Sum_probs=35.7

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCcc
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE  233 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~  233 (259)
                      +..+++|+|||+|.+|.-.+..|.+.|..|+++.+...++
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~   67 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAE   67 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHH
Confidence            4568999999999999999999999999999999877544

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.30  E-value=0.0033  Score=48.76  Aligned_cols=36  Identities=28%  Similarity=0.504  Sum_probs=29.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      |+.+|.+||.|.-|...|..|.+.|++|+++|+++.
T Consensus         4 Ms~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            4 MSEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             CCCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            567899999999999999999999999999998753

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.29  E-value=0.005  Score=48.11  Aligned_cols=35  Identities=26%  Similarity=0.504  Sum_probs=32.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      |.+|.|||.|.-|...|..|.+.|++|+++|+++.
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999999753

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.28  E-value=0.0056  Score=48.20  Aligned_cols=35  Identities=17%  Similarity=0.248  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHH-HHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLV-VGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~-~a~~L~~~g~~v~v~e~~~~   36 (259)
                      +++|.|||.|.+|++ +|..|.++|.+|.+.|+.+.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            578999999999996 78889999999999999753

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=96.28  E-value=0.0051  Score=48.63  Aligned_cols=33  Identities=30%  Similarity=0.619  Sum_probs=30.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      +.+|+|||+|.-|.++|..|.+.|.+|+++++.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            368999999999999999999999999999985

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.28  E-value=0.0056  Score=47.17  Aligned_cols=33  Identities=30%  Similarity=0.464  Sum_probs=30.9

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      +|.|||+|..|...|..|.+.|.+|+++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            699999999999999999999999999999754

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=96.27  E-value=0.0052  Score=49.06  Aligned_cols=34  Identities=35%  Similarity=0.464  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ..+|+|+|||.+|+.+|..|...|. +|+++|++.
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            3589999999999999999999999 999999973

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.26  E-value=0.0053  Score=48.12  Aligned_cols=34  Identities=29%  Similarity=0.459  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      +.+|+|||+|..|.++|..|.+.|+ +|+++|+++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            3589999999999999999999998 999999975

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.23  E-value=0.0056  Score=47.64  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=31.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+|.|||+|.-|...|..|.+.|++|+++|+++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4689999999999999999999999999999874

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=96.21  E-value=0.0062  Score=45.86  Aligned_cols=35  Identities=14%  Similarity=0.373  Sum_probs=32.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCC----cEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGH----TVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~----~v~v~e~~~   35 (259)
                      |+++|.|||+|.-|.+.|..|.+.|+    +|.++|+++
T Consensus         1 M~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            1 MDKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            66799999999999999999999998    999999864

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.21  E-value=0.0054  Score=50.77  Aligned_cols=35  Identities=14%  Similarity=0.381  Sum_probs=32.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc-CC-cEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE-GH-TVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~-g~-~v~v~e~~~~   36 (259)
                      +++|+|||+|.-|+.+|..|++. |+ +|+++|+++.
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            46899999999999999999999 99 9999999865

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=96.20  E-value=0.0055  Score=50.08  Aligned_cols=34  Identities=29%  Similarity=0.469  Sum_probs=31.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |.+|+|||.|..|+.+|..|++.|++|+.+|.++
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            5789999999999999999999999999999874

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=96.19  E-value=0.0045  Score=52.36  Aligned_cols=34  Identities=24%  Similarity=0.439  Sum_probs=32.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      ++|+|||+|+.|+.+|..|.+.+.+|+++++.+.
T Consensus       186 krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            6899999999999999999999999999999875

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.18  E-value=0.0042  Score=48.20  Aligned_cols=34  Identities=21%  Similarity=0.267  Sum_probs=31.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .+|.|||.|.-|...|..|.+.|++|+++|+++.
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5899999999999999999999999999999764

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.18  E-value=0.0056  Score=50.82  Aligned_cols=34  Identities=32%  Similarity=0.561  Sum_probs=31.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+|+|||+|..|+.+|..|++.|.+|+++|+++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4689999999999999999999999999999863

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=96.18  E-value=0.0055  Score=51.90  Aligned_cols=35  Identities=20%  Similarity=0.425  Sum_probs=32.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .++|+|||+|..|+.+|..|.+.+.+|++|++.+.
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            36899999999999999999999999999999875

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=96.17  E-value=0.0045  Score=49.77  Aligned_cols=36  Identities=11%  Similarity=0.189  Sum_probs=32.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcC-------CcEEEEeeCCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREG-------HTVVVYEKGEQ   36 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g-------~~v~v~e~~~~   36 (259)
                      |+.+|.|||+|.-|.++|..|.+.|       .+|+++++++.
T Consensus        20 ~~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           20 GPLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             SCBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            4568999999999999999999999       89999998754

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=96.17  E-value=0.0021  Score=53.71  Aligned_cols=33  Identities=18%  Similarity=0.168  Sum_probs=30.8

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |+|+|||+|.+|+-.|..|++.|.+|+++++++
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~   34 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRD   34 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCC
Confidence            679999999999999999999999999999988

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.17  E-value=0.0042  Score=47.92  Aligned_cols=35  Identities=23%  Similarity=0.455  Sum_probs=32.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      |.+|.|||.|.-|...|..|.+.|++|+++|+++.
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            46899999999999999999999999999999753

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.16  E-value=0.0073  Score=45.42  Aligned_cols=34  Identities=26%  Similarity=0.412  Sum_probs=31.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .++|.|||+|.-|.++|..|.+.|++|+++++++
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4689999999999999999999999999999864

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.10  E-value=0.0077  Score=46.43  Aligned_cols=34  Identities=24%  Similarity=0.411  Sum_probs=31.4

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+|.|||+ |..|..+|..|.+.|.+|+++++++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            468999999 9999999999999999999999864

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.09  E-value=0.0072  Score=48.16  Aligned_cols=33  Identities=36%  Similarity=0.375  Sum_probs=30.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~   34 (259)
                      ..+|+|+|||.+|+.+|..|...|. +|+++|+.
T Consensus       192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            3689999999999999999999998 89999996

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.09  E-value=0.003  Score=46.68  Aligned_cols=34  Identities=24%  Similarity=0.445  Sum_probs=30.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEE-EeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVV-YEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v-~e~~~   35 (259)
                      |.+|.|||+|..|.++|..|.+.|.+|++ +++++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            56899999999999999999999999998 88764

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=96.08  E-value=0.013  Score=48.86  Aligned_cols=59  Identities=15%  Similarity=0.017  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHhC-CceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCC
Q 024975          103 EEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~  168 (259)
                      ..+.+.+.+.+.+.+ ++  ++++++|++|+..+ +.+.|.+.++.    .+.||+||+|+|.....
T Consensus       255 ~~l~~~l~~~l~~~g~~~--i~~~~~V~~i~~~~-~~v~v~~~~g~----~~~ad~vI~a~~~~~l~  314 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLG--YVFGCPVRSVVNER-DAARVTARDGR----EFVAKRVVCTIPLNVLS  314 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEE--EESSCCEEEEEECS-SSEEEEETTCC----EEEEEEEEECCCGGGGG
T ss_pred             HHHHHHHHHHhhhcCceE--EEeCCEEEEEEEcC-CEEEEEECCCC----EEEcCEEEECCCHHHHh
Confidence            455666666666666 77  99999999999876 67888877654    68999999999975443

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.07  E-value=0.0061  Score=42.24  Aligned_cols=41  Identities=10%  Similarity=0.149  Sum_probs=33.2

Q ss_pred             CCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          190 RIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       190 ~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..+...++++|+|+|+|..|..++..|.+.|.+|+++.|.+
T Consensus        12 ~~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           12 HMSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             -----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             hhhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            34455567899999999999999999999999999999876

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.06  E-value=0.0028  Score=43.43  Aligned_cols=33  Identities=12%  Similarity=0.140  Sum_probs=30.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|+|||+|..|..++..|.+.|.+|++++++.
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            589999999999999999999999999999864

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.05  E-value=0.0069  Score=49.08  Aligned_cols=33  Identities=33%  Similarity=0.395  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|+|||+|..|+.++..|...|.+|+++|+++
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            579999999999999999999999999999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.04  E-value=0.0073  Score=45.55  Aligned_cols=33  Identities=18%  Similarity=0.355  Sum_probs=30.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      .+|+|||+|-.|..+|..|.+.|. +++|+|++.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            579999999999999999999998 899999964

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.03  E-value=0.0071  Score=48.20  Aligned_cols=34  Identities=26%  Similarity=0.452  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+|+|||+|.-|.++|..|.+.|.+|.++++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3589999999999999999999999999999964

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.03  E-value=0.0088  Score=46.94  Aligned_cols=35  Identities=17%  Similarity=0.391  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~   36 (259)
                      +.+|+|||+|..|..+|..|+..|+ +|+++|.++.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~   39 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   39 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence            4689999999999999999999998 9999998753

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.02  E-value=0.0065  Score=47.11  Aligned_cols=35  Identities=31%  Similarity=0.518  Sum_probs=30.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |+.+|.|||+|..|...|..|.+.|.+|.++|+++
T Consensus         4 M~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            4 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ccceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            34689999999999999999999999999999864

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=96.01  E-value=0.0076  Score=46.78  Aligned_cols=34  Identities=15%  Similarity=0.412  Sum_probs=31.2

Q ss_pred             CCeEEEEC-CChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIG-AGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG-~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+|.||| +|..|.++|..|.+.|.+|.++++++
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            46899999 99999999999999999999999864

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.00  E-value=0.0081  Score=47.84  Aligned_cols=33  Identities=24%  Similarity=0.458  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|+|||+|..|...|..|.+.|.+|+++++++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            589999999999999999999999999999863

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.00  E-value=0.0094  Score=43.84  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=30.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|.|||+|..|...|..|.+.|.+|++++++.
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999864

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.99  E-value=0.0082  Score=46.30  Aligned_cols=34  Identities=21%  Similarity=0.556  Sum_probs=31.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      ++|.|||+|..|...|..|.+.|++|+++|+++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            5899999999999999999999999999999753

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=95.96  E-value=0.0094  Score=48.04  Aligned_cols=34  Identities=29%  Similarity=0.296  Sum_probs=31.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..+|+|+|+|..|+.++..|...|.+|+++|+.+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999864

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.94  E-value=0.01  Score=46.48  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      ..+|.|||+|..|.++|..|.+.|.  +|+++|+++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            3689999999999999999999999  999999874

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=95.92  E-value=0.0094  Score=46.39  Aligned_cols=33  Identities=27%  Similarity=0.518  Sum_probs=30.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      ++|+|||+|..|.++|..|...|.  +++++|.++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            379999999999999999999998  999999874

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.88  E-value=0.01  Score=48.73  Aligned_cols=34  Identities=26%  Similarity=0.355  Sum_probs=31.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .+|.|||+|.-|...|..|++.|++|+++|+++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            6799999999999999999999999999999753

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=95.87  E-value=0.0093  Score=46.55  Aligned_cols=33  Identities=33%  Similarity=0.660  Sum_probs=30.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~   35 (259)
                      .+|+|||+|..|.++|..|.+.|  .+|+++|++.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            68999999999999999999998  6899999964

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=95.86  E-value=0.011  Score=48.56  Aligned_cols=35  Identities=37%  Similarity=0.532  Sum_probs=32.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      +.++.|||.|.-|+.+|..|++.|++|+++|+++.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35799999999999999999999999999999865

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.86  E-value=0.0095  Score=46.75  Aligned_cols=33  Identities=24%  Similarity=0.563  Sum_probs=31.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|.|||.|..|..+|..|.+.|++|+++|+++
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            589999999999999999999999999999874

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.85  E-value=0.011  Score=46.07  Aligned_cols=34  Identities=32%  Similarity=0.611  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+|.|||.|.-|...|..|.+.|++|+++|+++
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3689999999999999999999999999999874

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.85  E-value=0.01  Score=46.47  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=30.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      +.+|+|||+|..|.++|..|...+.  +++++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3589999999999999999999987  899999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=95.83  E-value=0.012  Score=46.96  Aligned_cols=33  Identities=18%  Similarity=0.378  Sum_probs=30.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|+|+|+|..|..++..|...|.+|+++|+++
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            579999999999999999999999999999864

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.82  E-value=0.013  Score=45.99  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=31.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~   36 (259)
                      +.+|+|||+|..|.++|..|...++ +++++|.++.
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            4589999999999999999999998 9999999753

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=95.82  E-value=0.0053  Score=50.30  Aligned_cols=36  Identities=17%  Similarity=0.236  Sum_probs=32.5

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCc
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD  232 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~  232 (259)
                      .++|+|||+|++|+-+|..|++.|.+|+++++++.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~   57 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPD   57 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGG
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChH
Confidence            368999999999999999999999999999998743

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=95.81  E-value=0.006  Score=49.36  Aligned_cols=33  Identities=24%  Similarity=0.212  Sum_probs=31.3

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      -+|+|||+|++|.=+|..|.+.|.+|++++|.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~   34 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNS   34 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            479999999999999999999999999999977

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=95.81  E-value=0.01  Score=49.16  Aligned_cols=33  Identities=30%  Similarity=0.434  Sum_probs=30.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|.|||+|.-|..+|..|++.|++|+++|+++
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999864

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=95.80  E-value=0.0082  Score=49.93  Aligned_cols=34  Identities=24%  Similarity=0.255  Sum_probs=30.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~   35 (259)
                      +.+|.|||+|..|+.+|..|++.  |++|+++|+++
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            46899999999999999999998  78999999863

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=95.78  E-value=0.0074  Score=46.47  Aligned_cols=33  Identities=24%  Similarity=0.363  Sum_probs=30.8

Q ss_pred             CeEEEEccCcCHHHHHHHHhcc-cCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGF-AKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~-~~~v~~~~r~~  230 (259)
                      .+|+|||+|++|+.+|..|.+. +.+|+++.+.+
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~   73 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   73 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4699999999999999999997 99999999987

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.78  E-value=0.01  Score=48.40  Aligned_cols=33  Identities=27%  Similarity=0.477  Sum_probs=30.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+|.|||+|..|+.+|..|++ |.+|+++|+++
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            3589999999999999999998 99999999874

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=95.77  E-value=0.0078  Score=48.83  Aligned_cols=35  Identities=17%  Similarity=0.142  Sum_probs=32.2

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +..+|+|||+|++|+-+|..|.+.|.+|++++|.+
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~   56 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVK   56 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            44689999999999999999999999999999987

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.76  E-value=0.005  Score=50.92  Aligned_cols=34  Identities=21%  Similarity=0.456  Sum_probs=31.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .++|+|+|+|-.|..+|..|.+.|++|+++|+++
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            3589999999999999999999999999999974

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=95.76  E-value=0.012  Score=49.16  Aligned_cols=35  Identities=23%  Similarity=0.328  Sum_probs=32.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |..+|.|||+|.-|..+|..|.+.|++|+++++++
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            56789999999999999999999999999999874

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=95.76  E-value=0.006  Score=49.54  Aligned_cols=32  Identities=25%  Similarity=0.280  Sum_probs=29.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHH-cCCcEEEEe
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLR-EGHTVVVYE   32 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~-~g~~v~v~e   32 (259)
                      |+++|+|||+|..|.++|..|++ .|.+|++++
T Consensus         1 ~~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            1 MTVKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             CCceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            56789999999999999999988 599999999

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=95.76  E-value=0.0093  Score=49.87  Aligned_cols=35  Identities=17%  Similarity=0.333  Sum_probs=32.5

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ...+|+|||+|++|+.+|..|.+.|.+|+++++.+
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~  125 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRI  125 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEecc
Confidence            35789999999999999999999999999999986

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=95.75  E-value=0.012  Score=46.05  Aligned_cols=32  Identities=41%  Similarity=0.579  Sum_probs=29.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      +.+|+|||+|.-|.+.|..|.+.|.+|+++ +.
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            468999999999999999999999999999 64

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=95.74  E-value=0.013  Score=44.96  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=30.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      |++|.|||+|..|.++|..|.+.|.  +|+++|+++
T Consensus         1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            3689999999999999999999998  899999864

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.74  E-value=0.012  Score=45.39  Aligned_cols=32  Identities=34%  Similarity=0.440  Sum_probs=30.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++|.|||+|.-|...|..|+ .|++|+++|+++
T Consensus        13 ~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           13 MKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            68999999999999999999 999999999974

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.73  E-value=0.013  Score=47.77  Aligned_cols=34  Identities=29%  Similarity=0.483  Sum_probs=31.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .+|+|||.|..|..+|..|.+.|++|+++|+++.
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            5799999999999999999999999999999843

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=95.67  E-value=0.0061  Score=49.37  Aligned_cols=53  Identities=4%  Similarity=-0.117  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCC
Q 024975          105 VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGH  164 (259)
Q Consensus       105 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~  164 (259)
                      +.+.+...+++.+++  ++.++++..++... +...+.+.++.    .+.+|.|++|+|.
T Consensus       204 ~~~~~~~~l~~~gi~--v~~~~~v~~v~~~~-~~~~v~~~~g~----~i~~D~vi~~~g~  256 (401)
T 3vrd_B          204 WERLYGFGTENALIE--WHPGPDAAVVKTDT-EAMTVETSFGE----TFKAAVINLIPPQ  256 (401)
T ss_dssp             HHHHSCTTSTTCSEE--EECTTTTCEEEEET-TTTEEEETTSC----EEECSEEEECCCE
T ss_pred             HHHHHHHHHHhcCcE--EEeCceEEEEEecc-cceEEEcCCCc----EEEeeEEEEecCc
Confidence            333444444556788  88899988888776 56677777765    8999999999995

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.66  E-value=0.017  Score=44.25  Aligned_cols=34  Identities=24%  Similarity=0.498  Sum_probs=31.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +++|+|.|+|..|..++..|.+.|.+|++++++.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   36 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSA   36 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999999999999999999999999974

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.66  E-value=0.015  Score=45.47  Aligned_cols=32  Identities=31%  Similarity=0.432  Sum_probs=30.5

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~   34 (259)
                      .+|+|||+|..|.++|..|...|+ +++++|.+
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            589999999999999999999999 99999997

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=95.66  E-value=0.013  Score=45.44  Aligned_cols=34  Identities=21%  Similarity=0.465  Sum_probs=30.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      +.+|+|||+|..|..+|+.|...+.  +++++|.++
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            4689999999999999999999988  999999975

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=95.64  E-value=0.0069  Score=48.49  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=30.2

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +|.|||+|.-|.+.|..|.+.|.+|+++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            89999999999999999999999999999863

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=95.62  E-value=0.011  Score=48.52  Aligned_cols=32  Identities=25%  Similarity=0.434  Sum_probs=30.2

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +|+|||+|..|+.+|..|++.|.+|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999999863

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=95.60  E-value=0.0093  Score=48.24  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=32.2

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~  231 (259)
                      ..+|+|||+|++|+-+|..|.+.|.+|++++|.+.
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   39 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            36799999999999999999999999999999873

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=95.60  E-value=0.01  Score=46.37  Aligned_cols=31  Identities=29%  Similarity=0.344  Sum_probs=29.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHc-----C-CcEEEEee
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE-----G-HTVVVYEK   33 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~-----g-~~v~v~e~   33 (259)
                      .+|.|||+|.-|...|..|.+.     | .+|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            5799999999999999999999     9 99999988

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=95.60  E-value=0.011  Score=47.83  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=31.9

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..+|+|||+|.+|+-+|..|.+.|.+|++++|.+
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   59 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN   59 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999999986

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=95.58  E-value=0.0078  Score=48.33  Aligned_cols=32  Identities=16%  Similarity=0.218  Sum_probs=30.5

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .|+|||+|++|.-+|..|++.|.+|++++|++
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~   37 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRP   37 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999976

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.58  E-value=0.017  Score=45.14  Aligned_cols=33  Identities=27%  Similarity=0.466  Sum_probs=29.8

Q ss_pred             eEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCC
Q 024975            4 HVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQ   36 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~   36 (259)
                      +|+|||+|..|.++|..|.+.  +.+|+++|+++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            799999999999999999985  689999999753

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=95.57  E-value=0.018  Score=45.08  Aligned_cols=35  Identities=23%  Similarity=0.431  Sum_probs=31.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~   36 (259)
                      +.+|+|||+|..|.++|..|...+. +++++|.++.
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~   40 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG   40 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence            3689999999999999999999888 9999999753

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.56  E-value=0.012  Score=44.79  Aligned_cols=37  Identities=22%  Similarity=0.292  Sum_probs=34.0

Q ss_pred             CCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC
Q 024975          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (259)
Q Consensus       195 ~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~  231 (259)
                      ..+++|+|||+|.+|.-.+..|.+.|.+|+++.+...
T Consensus        11 l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~   47 (274)
T 1kyq_A           11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH   47 (274)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            4579999999999999999999999999999998764

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=95.54  E-value=0.019  Score=43.61  Aligned_cols=33  Identities=24%  Similarity=0.494  Sum_probs=30.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++++|||+|-+|-+++..|.+.|.+|+|+.|..
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999998864

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.54  E-value=0.021  Score=41.90  Aligned_cols=36  Identities=19%  Similarity=0.435  Sum_probs=31.3

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHH-HcCCcEEEEeeCCC
Q 024975            1 MFRHVAVIGA-GAAGLVVGHELL-REGHTVVVYEKGEQ   36 (259)
Q Consensus         1 ~~~~v~IIG~-G~~Gl~~a~~L~-~~g~~v~v~e~~~~   36 (259)
                      ||+.|+|.|| |..|..++..|. +.|.+|+++++++.
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~   41 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK   41 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcc
Confidence            3456999996 999999999999 89999999998743

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.53  E-value=0.011  Score=45.42  Aligned_cols=32  Identities=31%  Similarity=0.469  Sum_probs=29.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|.|||+|..|...|..|.+ |.+|+++|+++
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            579999999999999999999 99999999864

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=95.52  E-value=0.019  Score=46.04  Aligned_cols=33  Identities=21%  Similarity=0.390  Sum_probs=30.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..|+|+|+|..|..+|..|...|.+|+++|+++
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            579999999999999999999999999999863

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=95.52  E-value=0.015  Score=45.48  Aligned_cols=33  Identities=21%  Similarity=0.394  Sum_probs=30.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~   34 (259)
                      +.+|.|||.|.-|..+|..|.+.|+ +|+++|++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            3689999999999999999999999 99999995

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=95.50  E-value=0.01  Score=47.64  Aligned_cols=35  Identities=17%  Similarity=0.135  Sum_probs=32.3

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~  231 (259)
                      ..+|+|||+|.+|+.+|..|.+.|.+|++++|.+.
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~   45 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSE   45 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            46899999999999999999999999999999873

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.49  E-value=0.018  Score=45.93  Aligned_cols=33  Identities=30%  Similarity=0.517  Sum_probs=31.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|.|||.|.-|..+|..|.+.|++|+++|+++
T Consensus        23 mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           23 MQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            689999999999999999999999999999974

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=95.49  E-value=0.015  Score=45.51  Aligned_cols=33  Identities=21%  Similarity=0.470  Sum_probs=30.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      ++|+|||+|..|.++|..|.+.|.  +|+++|+++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            379999999999999999999998  999999864

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.48  E-value=0.02  Score=46.03  Aligned_cols=34  Identities=35%  Similarity=0.341  Sum_probs=31.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ...|+|||+|..|..+|..|...|.+|+++|+++
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3579999999999999999999999999999863

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=95.47  E-value=0.02  Score=43.71  Aligned_cols=33  Identities=27%  Similarity=0.261  Sum_probs=30.5

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|+|+|-.|.++|..|.+.|.+|++++++.
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            579999999999999999999999999998863

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=95.47  E-value=0.045  Score=45.69  Aligned_cols=47  Identities=19%  Similarity=0.215  Sum_probs=35.9

Q ss_pred             HHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCC
Q 024975          111 NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGH  164 (259)
Q Consensus       111 ~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~  164 (259)
                      +.+++.|++  ++.+++|+++...+ +...+.+.++.    .+.+|.||+|+|.
T Consensus       265 ~~l~~~GV~--v~~~~~v~~i~~~~-~v~~v~~~~g~----~i~aD~Vv~a~G~  311 (493)
T 1y56_A          265 QELERWGID--YVHIPNVKRVEGNE-KVERVIDMNNH----EYKVDALIFADGR  311 (493)
T ss_dssp             HHHHHHTCE--EEECSSEEEEECSS-SCCEEEETTCC----EEECSEEEECCCE
T ss_pred             HHHHhCCcE--EEeCCeeEEEecCC-ceEEEEeCCCe----EEEeCEEEECCCc
Confidence            455677999  99999999998543 44456655543    7999999999994

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=95.46  E-value=0.036  Score=45.05  Aligned_cols=57  Identities=16%  Similarity=0.169  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEE-EEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~-v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ..+.+.|.+.+.+.|.+  ++++++|++|..++ +.+. |.++ +    ..+.||.||+|+|.+..
T Consensus       196 ~~l~~~l~~~~~~~G~~--i~~~~~V~~i~~~~-~~~~gv~~~-g----~~~~ad~VV~a~~~~~~  253 (425)
T 3ka7_A          196 KGIIDALETVISANGGK--IHTGQEVSKILIEN-GKAAGIIAD-D----RIHDADLVISNLGHAAT  253 (425)
T ss_dssp             HHHHHHHHHHHHHTTCE--EECSCCEEEEEEET-TEEEEEEET-T----EEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHcCCE--EEECCceeEEEEEC-CEEEEEEEC-C----EEEECCEEEECCCHHHH
Confidence            45777778888888999  99999999999876 5565 6554 3    37999999999997543

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=95.44  E-value=0.022  Score=43.76  Aligned_cols=34  Identities=18%  Similarity=0.291  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC---cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH---TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~---~v~v~e~~~   35 (259)
                      +++|.|||+|.-|.+.|..|.+.|+   +|+++|+++
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            4789999999999999999999998   999999975

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=95.42  E-value=0.016  Score=45.60  Aligned_cols=30  Identities=30%  Similarity=0.576  Sum_probs=29.0

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEee
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEK   33 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~   33 (259)
                      +|.|||+|..|...|..|.+.|.+|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            699999999999999999999999999998

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.41  E-value=0.018  Score=47.77  Aligned_cols=33  Identities=33%  Similarity=0.596  Sum_probs=31.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|.|||+|.-|...|..|++.|++|+++|+++
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            589999999999999999999999999999874

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.40  E-value=0.019  Score=44.85  Aligned_cols=33  Identities=30%  Similarity=0.595  Sum_probs=30.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|.|||+|..|...|..|.+.|.+|+++|+++
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            679999999999999999999999999999864

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=95.37  E-value=0.025  Score=45.48  Aligned_cols=35  Identities=26%  Similarity=0.440  Sum_probs=31.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      ++.|+|||+|..|.+++..+.+.|++++++|.++.
T Consensus        12 ~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           12 GATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            36799999999999999999999999999998643

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=95.36  E-value=0.021  Score=41.73  Aligned_cols=32  Identities=34%  Similarity=0.511  Sum_probs=29.8

Q ss_pred             eEEEEC-CChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HVAVIG-AGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG-~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +|+||| +|..|..+|..|.+.|.+|.++++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            699999 99999999999999999999999863

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=95.36  E-value=0.015  Score=48.22  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=31.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~   35 (259)
                      +.+|.|||+|..|+.+|..|++.  |.+|+++|+++
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            35899999999999999999999  79999999863

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=95.34  E-value=0.021  Score=47.38  Aligned_cols=35  Identities=17%  Similarity=0.275  Sum_probs=32.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      +.+|.|||.|.-|..+|..|.+.|++|+++|+++.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~   38 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   38 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999999753

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=95.32  E-value=0.021  Score=43.26  Aligned_cols=34  Identities=15%  Similarity=0.391  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcC----CcEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREG----HTVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g----~~v~v~e~~~~   36 (259)
                      .+|.|||+|.-|.+.|..|.+.|    .+|.++|+++.
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            58999999999999999999998    69999998753

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=95.31  E-value=0.023  Score=44.89  Aligned_cols=34  Identities=26%  Similarity=0.435  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..+|.|||.|.-|-++|..|.+.|.+|+++|+++
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3679999999999999999999999999999874

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=95.30  E-value=0.011  Score=49.33  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=32.0

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..+|+|||+|.+|+.+|..|.+.|.+|+++++++
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~   66 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   66 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence            4789999999999999999999999999999987

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.29  E-value=0.021  Score=44.65  Aligned_cols=33  Identities=24%  Similarity=0.432  Sum_probs=29.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      .+|+|||+|..|.++|..|...+.  ++.++|.+.
T Consensus         7 ~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            7 NKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT   41 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            589999999999999999998885  899999753

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=95.29  E-value=0.022  Score=44.73  Aligned_cols=34  Identities=32%  Similarity=0.515  Sum_probs=30.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      +.+|+|||+|..|.++|..|...+.  +++++|.+.
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            3589999999999999999999987  899999863

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=95.28  E-value=0.024  Score=44.51  Aligned_cols=34  Identities=26%  Similarity=0.454  Sum_probs=30.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ..+|+|||+|-.|..+|..|.+.|+ +++|+|...
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            3689999999999999999999998 899999863

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=95.26  E-value=0.022  Score=44.08  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=30.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ++++|||+|..|.++|..|.+.|. +|+|+++..
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            579999999999999999999998 999998863

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=95.26  E-value=0.023  Score=44.49  Aligned_cols=34  Identities=32%  Similarity=0.452  Sum_probs=30.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      +.+|+|||+|..|.++|..|...+.  +++++|.+.
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            4689999999999999999998875  899999874

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=95.24  E-value=0.01  Score=47.53  Aligned_cols=33  Identities=21%  Similarity=0.128  Sum_probs=31.2

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~   50 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT   50 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            579999999999999999999999999999976

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.23  E-value=0.022  Score=44.04  Aligned_cols=32  Identities=19%  Similarity=0.321  Sum_probs=29.8

Q ss_pred             eEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      +|+|||+|..|.++|..|.+.+.  +++++|..+
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            79999999999999999999987  899999864

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.22  E-value=0.027  Score=43.83  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=32.2

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      +++|+|.|| |..|..++..|.+.|.+|+++++...
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            578999999 99999999999999999999998653

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=95.21  E-value=0.017  Score=46.90  Aligned_cols=31  Identities=29%  Similarity=0.378  Sum_probs=29.1

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +|.|||+|..|+.+|..|.+ |.+|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            79999999999999999999 99999999863

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=95.21  E-value=0.027  Score=45.26  Aligned_cols=34  Identities=24%  Similarity=0.477  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |++|+|||+|..|..++..|.+.|+++++++.++
T Consensus         1 M~~Ililg~g~~g~~~~~a~~~~G~~v~~~~~~~   34 (380)
T 3ax6_A            1 MKKIGIIGGGQLGKMMTLEAKKMGFYVIVLDPTP   34 (380)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4789999999999999999999999999999864

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.20  E-value=0.022  Score=47.05  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=30.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.|+|||+|..|...+..|.+.|.+|+|+++..
T Consensus        13 ~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A           13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            679999999999999999999999999999853

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.19  E-value=0.023  Score=43.72  Aligned_cols=33  Identities=27%  Similarity=0.506  Sum_probs=30.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      .+|+|||+|-.|..+|..|.+.|+ +++|+|.+.
T Consensus        37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            589999999999999999999997 899999863

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=95.19  E-value=0.013  Score=47.20  Aligned_cols=33  Identities=15%  Similarity=0.148  Sum_probs=31.0

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++|+|||+|..|+++|..+++.|.+|+++.+++
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            469999999999999999999999999999877

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.18  E-value=0.025  Score=43.28  Aligned_cols=32  Identities=25%  Similarity=0.526  Sum_probs=29.9

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +|.|||+|..|.++|..|.+.|.+|+++|+++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999998864

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.17  E-value=0.027  Score=43.72  Aligned_cols=34  Identities=26%  Similarity=0.436  Sum_probs=31.4

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         1 ~~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      |+++|+|.|| |..|..++..|.+.|.+|+++++.
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   35 (311)
T 3m2p_A            1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRS   35 (311)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence            6789999996 999999999999999999999997

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.16  E-value=0.031  Score=40.31  Aligned_cols=33  Identities=27%  Similarity=0.509  Sum_probs=30.8

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.|+|+|| |..|..++..|.+.|.+|+++++++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            68999999 9999999999999999999999864

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.16  E-value=0.028  Score=41.71  Aligned_cols=35  Identities=31%  Similarity=0.378  Sum_probs=31.8

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .+.|+|.|| |..|..++..|.+.|.+|+++++++.
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            467999999 99999999999999999999999743

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=95.15  E-value=0.014  Score=46.93  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=30.8

Q ss_pred             eEEEEccCcCHHHHHHHHhcc--cCeEEEEecCCC
Q 024975          199 VVILIGHYASGLDIKRDLAGF--AKEVHIASRSVA  231 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~--~~~v~~~~r~~~  231 (259)
                      +|+|||+|++|+-+|..|.+.  |.+|++++|.+.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~   36 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDE   36 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence            699999999999999999998  999999999873

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=95.15  E-value=0.015  Score=46.32  Aligned_cols=34  Identities=18%  Similarity=0.335  Sum_probs=31.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcC-------CcEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREG-------HTVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g-------~~v~v~e~~~~   36 (259)
                      ++|+|||+|.-|.+.|..|.+.|       .+|+++++++.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            48999999999999999999998       89999998754

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=95.15  E-value=0.026  Score=44.25  Aligned_cols=34  Identities=18%  Similarity=0.319  Sum_probs=30.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      +.+|+|||+|..|.++|+.|...+.  +++++|.+.
T Consensus         9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   44 (326)
T 3vku_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            3689999999999999999999887  899999853

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=95.14  E-value=0.023  Score=44.04  Aligned_cols=34  Identities=35%  Similarity=0.490  Sum_probs=31.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+|.|||+|..|...|..|.+.|.+|+++|+++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3589999999999999999999999999999864

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=95.14  E-value=0.015  Score=46.93  Aligned_cols=33  Identities=21%  Similarity=0.261  Sum_probs=31.1

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~   37 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHT   37 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            469999999999999999999999999999987

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=95.13  E-value=0.031  Score=45.10  Aligned_cols=33  Identities=18%  Similarity=0.405  Sum_probs=30.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.|+|||+|..|..++..+.+.|++++++|.++
T Consensus        15 k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           15 KTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            579999999999999999999999999999864

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.13  E-value=0.0091  Score=44.48  Aligned_cols=33  Identities=27%  Similarity=0.259  Sum_probs=30.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .+++|+|+|..|..+|..|.+.|. |+++|+++.
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            579999999999999999999999 999999753

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.13  E-value=0.029  Score=43.38  Aligned_cols=33  Identities=30%  Similarity=0.453  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.|.|||+|..|..+|..|...|.+|+++++..
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            579999999999999999999999999999864

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=95.11  E-value=0.022  Score=43.58  Aligned_cols=33  Identities=30%  Similarity=0.396  Sum_probs=30.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|+|+|-.|.++|..|.+.|.+|+|++|+.
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            579999999999999999999999999999863

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=95.11  E-value=0.024  Score=44.03  Aligned_cols=34  Identities=26%  Similarity=0.518  Sum_probs=32.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |++|-+||-|.-|...|.+|.+.|++|+++|+++
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~   36 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   36 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            6899999999999999999999999999999974

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=95.11  E-value=0.013  Score=47.78  Aligned_cols=34  Identities=21%  Similarity=0.263  Sum_probs=31.3

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~   60 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHAR   60 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3579999999999999999999999999999987

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=95.09  E-value=0.026  Score=43.99  Aligned_cols=34  Identities=32%  Similarity=0.451  Sum_probs=30.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~~   36 (259)
                      ++|+|||+|..|.++|..|...+.  +++++|.++.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~   36 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDG   36 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchH
Confidence            379999999999999999999887  8999999753

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.08  E-value=0.033  Score=43.18  Aligned_cols=33  Identities=27%  Similarity=0.472  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..+.|||+|..|..+|..|...|.+|+++|+..
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            579999999999999999999999999999863

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=95.07  E-value=0.015  Score=48.16  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=31.2

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccC--eEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAK--EVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~--~v~~~~r~~  230 (259)
                      ++|+|||+|.+|+-.|..|.+.|.  +|+++++++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~   37 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE   37 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence            579999999999999999999998  999999977

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=95.07  E-value=0.014  Score=47.08  Aligned_cols=33  Identities=15%  Similarity=0.094  Sum_probs=31.2

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+|+|||+|.+|+-+|..|.+.|.+|+++++.+
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~   39 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQAR   39 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            479999999999999999999999999999987

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=95.06  E-value=0.017  Score=46.34  Aligned_cols=34  Identities=18%  Similarity=0.252  Sum_probs=31.8

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~  229 (259)
                      ...+|+|||+|.+|+-+|..|.+.|.+|++++++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~   76 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN   76 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            3578999999999999999999999999999998

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=95.05  E-value=0.015  Score=46.26  Aligned_cols=33  Identities=36%  Similarity=0.369  Sum_probs=31.1

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~   37 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE   37 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999999999999985

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=95.05  E-value=0.015  Score=47.24  Aligned_cols=33  Identities=18%  Similarity=0.136  Sum_probs=31.2

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            479999999999999999999999999999986

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=95.04  E-value=0.027  Score=44.21  Aligned_cols=33  Identities=21%  Similarity=0.389  Sum_probs=30.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcC----CcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREG----HTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g----~~v~v~e~~~   35 (259)
                      .+|.|||+|.-|.+.|..|.+.|    .+|+++++++
T Consensus        23 mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           23 MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             CCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            47999999999999999999999    7999999865

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=95.04  E-value=0.027  Score=42.66  Aligned_cols=32  Identities=22%  Similarity=0.486  Sum_probs=29.9

Q ss_pred             eEEEECCChHHHHHHHHHHHcC-CcEEEEeeCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~   35 (259)
                      +|.|||+|..|...|..|.+.| .+|.++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            6999999999999999999999 9999999863

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=95.03  E-value=0.024  Score=43.77  Aligned_cols=32  Identities=25%  Similarity=0.509  Sum_probs=30.1

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +|.|||+|..|...|..|.+.|.+|+++|+++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            69999999999999999999999999999874

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.02  E-value=0.021  Score=42.04  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=31.3

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |++|+|.|| |..|..++..|.+.|.+|+++++++
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            468999996 9999999999999999999999974

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=95.02  E-value=0.011  Score=47.12  Aligned_cols=33  Identities=15%  Similarity=0.107  Sum_probs=31.0

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~   35 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM   35 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            469999999999999999999999999999986

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.00  E-value=0.024  Score=39.03  Aligned_cols=34  Identities=18%  Similarity=0.197  Sum_probs=31.3

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++++|+|+|..|..++..|.+.+.+|+++.|.+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4679999999999999999999999999999975

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=94.99  E-value=0.049  Score=45.07  Aligned_cols=57  Identities=12%  Similarity=0.087  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEE-eCCCcEEEEEEecCCceEEEEeCEEEEccCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARL-VESNKWKVKSRKKDDVVEEETFDAVVVCNGHF  165 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~-~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~  165 (259)
                      .++.+.+.+.+.+.|.+  ++++++|++|.. .+++.+.|.+.+|.    .+.||.||.|+|.+
T Consensus       256 ~~L~~aL~r~~~~~Gg~--i~l~t~V~~I~~d~~g~v~gV~~~~G~----~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGT--FMLNKNVVDFVFDDDNKVCGIKSSDGE----IAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--C--EESSCCEEEEEECTTSCEEEEEETTSC----EEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCE--EEeCCeEEEEEEecCCeEEEEEECCCc----EEECCEEEECCCcc
Confidence            57788888888899999  999999999998 44344678887654    79999999999954

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=94.99  E-value=0.028  Score=42.36  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=30.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      .+|+|||+|-.|..+|..|.+.|+ +++|+|.+.
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            589999999999999999999998 899999863

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=94.97  E-value=0.029  Score=42.94  Aligned_cols=33  Identities=30%  Similarity=0.558  Sum_probs=30.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++++|||+|..|.++|..|.+.|.+|++++++.
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            579999999999999999999999999999863

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=94.97  E-value=0.016  Score=46.51  Aligned_cols=33  Identities=18%  Similarity=0.128  Sum_probs=31.0

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~   36 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            469999999999999999999999999999886

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=94.96  E-value=0.017  Score=46.85  Aligned_cols=33  Identities=18%  Similarity=0.154  Sum_probs=31.3

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCe-EEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKE-VHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~-v~~~~r~~  230 (259)
                      .+|+|||+|++|+-+|..|.+.|.+ |+++.|.+
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            5799999999999999999999999 99999987

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=94.95  E-value=0.038  Score=40.38  Aligned_cols=32  Identities=31%  Similarity=0.499  Sum_probs=29.9

Q ss_pred             eEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +|+|+|| |..|..++..|.++|.+|+++.+++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            6999997 9999999999999999999999974

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=94.94  E-value=0.023  Score=45.22  Aligned_cols=33  Identities=30%  Similarity=0.357  Sum_probs=30.9

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            579999999999999999999999999999865

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=94.94  E-value=0.037  Score=43.73  Aligned_cols=34  Identities=15%  Similarity=0.248  Sum_probs=30.2

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      +.+|+|||+ |..|.++|+.|...|.  +++++|.+.
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~   44 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA   44 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            468999998 9999999999999885  899999863

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=94.94  E-value=0.027  Score=42.62  Aligned_cols=34  Identities=15%  Similarity=0.266  Sum_probs=31.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+|.|||+|..|...|..|.+.|.+|.++|+++
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            4689999999999999999999999999999864

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=94.93  E-value=0.019  Score=44.37  Aligned_cols=33  Identities=27%  Similarity=0.335  Sum_probs=29.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |.+|.|||+|..|...|..|.+.|.+|+++| ++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            4689999999999999999999999999998 64

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=94.93  E-value=0.017  Score=47.03  Aligned_cols=34  Identities=24%  Similarity=0.281  Sum_probs=31.5

Q ss_pred             CCeEEEEccCcCHHHHHHHHhccc-CeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~-~~v~~~~r~~  230 (259)
                      ..+|+|||+|.+|+-.|..|.+.| .+|+++++++
T Consensus         6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~   40 (424)
T 2b9w_A            6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTD   40 (424)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            467999999999999999999999 8999999877

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=94.92  E-value=0.025  Score=45.80  Aligned_cols=33  Identities=30%  Similarity=0.297  Sum_probs=30.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|+|.|..|..+|..|...|.+|+++|+++
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            579999999999999999999999999999864

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=94.90  E-value=0.016  Score=45.71  Aligned_cols=33  Identities=12%  Similarity=0.023  Sum_probs=30.4

Q ss_pred             CeEEEEccCcCHHHHHHHHhc---ccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAG---FAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~---~~~~v~~~~r~~  230 (259)
                      .+|+|||+|.+|+-+|..|.+   .|.+|+++++.+
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~   37 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD   37 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence            369999999999999999999   888999999875

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=94.89  E-value=0.033  Score=43.68  Aligned_cols=33  Identities=21%  Similarity=0.351  Sum_probs=30.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      .+|+|||+|..|.++|+.|+..++  +++++|.+.
T Consensus        22 ~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           22 NKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            589999999999999999999987  899999864

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=94.89  E-value=0.038  Score=43.39  Aligned_cols=34  Identities=21%  Similarity=0.388  Sum_probs=30.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      ..+|+|||+|..|.++|+.|...+.  +++++|.+.
T Consensus        19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~   54 (331)
T 4aj2_A           19 QNKITVVGVGAVGMACAISILMKDLADELALVDVIE   54 (331)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence            3689999999999999999999887  899999863

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=94.87  E-value=0.014  Score=47.00  Aligned_cols=33  Identities=27%  Similarity=0.230  Sum_probs=31.0

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+|+|||+|.+|+-+|..|.+.|.+|++++|.+
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   35 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            369999999999999999999999999999987

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=94.87  E-value=0.016  Score=47.34  Aligned_cols=32  Identities=31%  Similarity=0.365  Sum_probs=30.3

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|+|||+|.+|+-.|..|.+.|.+|+++++++
T Consensus         3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~   34 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE   34 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            69999999999999999999999999999876

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=94.84  E-value=0.016  Score=46.46  Aligned_cols=33  Identities=24%  Similarity=0.411  Sum_probs=31.0

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus         6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            569999999999999999999999999999976

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=94.83  E-value=0.028  Score=49.16  Aligned_cols=34  Identities=29%  Similarity=0.478  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+|.|||+|.-|...|..|++.|++|+++|+++
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            3579999999999999999999999999999974

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=94.83  E-value=0.034  Score=45.91  Aligned_cols=33  Identities=27%  Similarity=0.338  Sum_probs=30.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|+|+|..|.++|..|+..|.+|+++|+++
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            579999999999999999999999999999864

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=94.83  E-value=0.018  Score=48.12  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=30.4

Q ss_pred             CeEEEEccCcCHHHHHHHHhcc-cCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGF-AKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~-~~~v~~~~r~~  230 (259)
                      -.|+|||+|.+|+-+|..|++. |.+|+++++++
T Consensus        11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~   44 (513)
T 4gde_A           11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE   44 (513)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCC
Confidence            4699999999999999999875 89999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	259
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	2e-27
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	1e-18
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	2e-13
d2gv8a2	107	c.3.1.5 (A:181-287) Flavin-dependent monoxygenase	1e-12
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	7e-12
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	1e-09
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	2e-09
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	2e-09
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	2e-09
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	2e-09
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	8e-09
d1w4xa2	235	c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T	1e-08
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	4e-08
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-07
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	2e-07
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	3e-07
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	3e-07
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	4e-07
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	2e-06
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	2e-06
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	2e-06
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	2e-06
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	4e-06
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	6e-06
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	6e-06
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	6e-06
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	8e-06
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	9e-06
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	1e-05
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	3e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	3e-05
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	4e-05
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	6e-05
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	7e-05
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	7e-05
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	8e-05
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	2e-04
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	4e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	4e-04
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	5e-04
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	6e-04
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	0.001
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	0.001
d1f0ya2	192	c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA	0.002
d1ps9a3	179	c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu	0.002
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	0.002
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	0.003
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	0.003
d1ks9a2	167	c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Esc	0.003

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score =  105 bits (262), Expect = 2e-27
 Identities = 65/286 (22%), Positives = 109/286 (38%), Gaps = 51/286 (17%)

Query: 3   RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSET------------- 47
           R +A+IGAG +GLV    LL E     V ++E+    GG W YTS               
Sbjct: 5   RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPIL 64

Query: 48  ESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLR 107
            ++P+          S LY+ L+ N P ELMG+    F            ++P    +  
Sbjct: 65  TTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKP-------QTLQFPHRHTIQE 117

Query: 108 YLQNFAREFGVDQVVRLHTEVLNARLVESNKWK--VKSRKKDDVVEEETFDAVVVCNGHF 165
           Y + +A+       ++L T+VL+    +   W    K  K    + ++ FDAV +CNGH+
Sbjct: 118 YQRIYAQPLLPF--IKLATDVLDIE-KKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHY 174

Query: 166 SVPRLAQVPGI-----------------DSWPGKQMHSHNYRIPNP---FQDQVVILIGH 205
            VP    +  +                 D      ++ H + IP+P   F    + ++  
Sbjct: 175 EVPYTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPF 234

Query: 206 YASGLDIKRDLAGFAKEVHIASRSVA----DETHEKQPGYDNMWLH 247
             S          ++  + + S+       DE      G +NM+  
Sbjct: 235 PTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELMFSLSGANNMYHS 280

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 81.0 bits (199), Expect = 1e-18
 Identities = 42/194 (21%), Positives = 65/194 (33%), Gaps = 30/194 (15%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
           V V+GAG +GL   + L   G +V V E    VGG W +             NRYP    
Sbjct: 10  VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYW-------------NRYPGARC 56

Query: 65  LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
             +S+           Q + +            RY    E+LRY+   A +F +   +  
Sbjct: 57  DIESIEYCYSFSEEVLQEWNWT----------ERYASQPEILRYINFVADKFDLRSGITF 106

Query: 125 HTEVLNARL-VESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPG--IDSWPG 181
           HT V  A     +N W V +   D          +++ +G  S      +    I     
Sbjct: 107 HTTVTAAAFDEATNTWTVDTNHGDR----IRARYLIMASGQLSDALTGALFKIDIRGVGN 162

Query: 182 KQMHSHNYRIPNPF 195
             +       P  +
Sbjct: 163 VALKEKWAAGPRTY 176

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 65.7 bits (159), Expect = 2e-13
 Identities = 33/170 (19%), Positives = 72/170 (42%), Gaps = 8/170 (4%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESD--PLGVDPNRYPVH 62
             +IGAGAAGL    +L + G +V V++ G+++G   + +     +   L V P  Y   
Sbjct: 7   NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQ 66

Query: 63  SS--LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQ 120
           +   +  +L      + +   A   +  + +    L    G E+++  L++   ++G   
Sbjct: 67  NPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKI 126

Query: 121 VVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRL 170
              L +EV     +++++      + +    +     ++V  G  S+P L
Sbjct: 127 --LLRSEVSQVERIQNDEKVRFVLQVNS--TQWQCKNLIVATGGLSMPGL 172

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 60.8 bits (147), Expect = 1e-12
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 173 VPGIDSW----PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228
           + G+D +    PG  +HS  +R P  F  + V+++G  +S  D+ R L   AK     S 
Sbjct: 4   IKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSL 63

Query: 229 S 229
            
Sbjct: 64  L 64

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 61.2 bits (147), Expect = 7e-12
 Identities = 45/233 (19%), Positives = 76/233 (32%), Gaps = 23/233 (9%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT-----SETESDPLGVDPNRY 59
           V VIG G +GL+       EG  V++ +KG ++G     +     + T   PL       
Sbjct: 5   VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHI 64

Query: 60  PVHSSLYKSLRVNLPRE--LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG 117
           P +     S       E  +  F+      +  +           + V+  L    ++ G
Sbjct: 65  PGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLG 124

Query: 118 VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
           V        E +     E+ + K    +  +       + VV+  G  SVP+        
Sbjct: 125 VKIRTNTPVETI---EYENGQTKAVILQTGE---VLETNHVVIAVGGKSVPQTGSTGDGY 178

Query: 178 SWPGKQMHSHNY--------RIPNPFQDQVVILIGHYASG--LDIKRDLAGFA 220
           +W  K  H+           +  NP +       G Y  G  LDI     G+ 
Sbjct: 179 AWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYN 231

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 55.5 bits (132), Expect = 1e-09
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 3/139 (2%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVD--PNRYP 60
           +HV ++GAG AGL   + L   GH V V E  E+ GG  + T   E      +  P R P
Sbjct: 31  KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG-RVRTYRNEEAGWYANLGPMRLP 89

Query: 61  VHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQ 120
               + +         L  F      A  +  ++  +     ++                
Sbjct: 90  EKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKS 149

Query: 121 VVRLHTEVLNARLVESNKW 139
             +L+ E L   + E  + 
Sbjct: 150 AGQLYEESLGKVVEELKRT 168

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 55.1 bits (131), Expect = 2e-09
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
          VAV+G G +GL V H L   G   V+ E   ++GG  + T       +   PN +     
Sbjct: 3  VAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG-AVGTHALAGYLVEQGPNSFLDREP 61

Query: 65 LYKSL 69
            ++L
Sbjct: 62 ATRAL 66

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 54.8 bits (131), Expect = 2e-09
 Identities = 20/146 (13%), Positives = 62/146 (42%), Gaps = 9/146 (6%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVD--PNRYP 60
           + + ++GAG +G V+G +L  +GH V + ++ + +GG+     ++E++ +     P+ + 
Sbjct: 3   KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFH 62

Query: 61  VHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQ 120
             +    +        +             + +V+ + +     +    Q F++    D+
Sbjct: 63  TDNETVWNYVNKHAEMMPYV-------NRVKATVNGQVFSLPINLHTINQFFSKTCSPDE 115

Query: 121 VVRLHTEVLNARLVESNKWKVKSRKK 146
              L  E  ++ + +   ++ ++ + 
Sbjct: 116 ARALIAEKGDSTIADPQTFEEEALRF 141

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 2e-09
 Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 6/118 (5%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR----- 58
            V +IG+G +GL    +L   G  V + E  ++VGG  + T    +    +         
Sbjct: 7   KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG-RVATFRKGNYVADLGAMVVTGLG 65

Query: 59  YPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF 116
               + + K + + L +       Y    +      D         +L      + + 
Sbjct: 66  GNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQL 123

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 54.8 bits (130), Expect = 2e-09
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN----R 58
          + VAVIGAG +GL   ++L   G  V V+E   + GG  + +   +        N     
Sbjct: 2  KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG-KLRSVSQDGLIWDEGANTMTES 60

Query: 59 YPVHSSLYKSLRVNLPRELMGFQAYPFVARNY 90
              + L  SL +   ++    Q   ++ARN 
Sbjct: 61 EGDVTFLIDSLGLREKQQFPLSQNKRYIARNG 92

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (126), Expect = 8e-09
 Identities = 36/238 (15%), Positives = 78/238 (32%), Gaps = 16/238 (6%)

Query: 1   MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP 60
           M+    ++G+G  G V  +EL +    V+V EK   +GG   YT + E    G+  ++Y 
Sbjct: 1   MYD-YIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG-NAYTEDCE----GIQIHKYG 54

Query: 61  VH-SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD 119
            H          +   +L+ F  +            L   P +      +          
Sbjct: 55  AHIFHTNDKYIWDYVNDLVEFNRFTNSPLAIY-KDKLFNLPFNMNTFHQMWGVKDPQEAQ 113

Query: 120 QVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSW 179
            ++    +    ++ E+ + +  S   +D+ +        +  G+           + ++
Sbjct: 114 NIINAQKKKYGDKVPENLEEQAISLVGEDLYQA-------LIKGYTEKQWGRSAKELPAF 166

Query: 180 PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
             K++    +   N +       I        I++ L G   ++ I      D    K
Sbjct: 167 IIKRIPV-RFTFDNNYFSDRYQGIPVGGYTKLIEKMLEGVDVKLGIDFLKDKDSLASK 223

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 52.1 bits (123), Expect = 1e-08
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 167 VPRLAQVPGIDSWPGKQMHSHNY-RIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHI 225
           VP+L   PG+  + G   H+ N+   P  F  Q V +IG  +SG+ +   +A  A E+ +
Sbjct: 1   VPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFV 60

Query: 226 ASRSVADETHEKQPGYDNMWLHSMVRTKKCSRM 258
             R+       +    D  +L  + +     R 
Sbjct: 61  FQRTPHFAVPARNAPLDPEFLADLKKRYAEFRE 93

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 4e-08
 Identities = 25/119 (21%), Positives = 35/119 (29%), Gaps = 8/119 (6%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVD------PNR 58
           V V+G G +G+     L   G  VVV E  ++VGG   YT   +     VD         
Sbjct: 2   VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGG-RTYTLRNQ-KVKYVDLGGSYVGPT 59

Query: 59  YPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG 117
                 L K L +   +     +    V               +        NF R   
Sbjct: 60  QNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMD 118

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.5 bits (116), Expect = 1e-07
 Identities = 14/104 (13%), Positives = 24/104 (23%), Gaps = 8/104 (7%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
           V V+G G    ++   +   G  V+  ++    GG            +      Y     
Sbjct: 9   VIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSS--------ITPLEELYKRFQL 60

Query: 65  LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRY 108
           L                  P         V +  Y      L +
Sbjct: 61  LEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDF 104

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 48.8 bits (114), Expect = 2e-07
 Identities = 23/217 (10%), Positives = 60/217 (27%), Gaps = 10/217 (4%)

Query: 4   HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR---- 58
            V V+GAG +G+     L   G   +++ E  + +GG  ++ +      + +  N     
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG-RMHKTNFAGINVELGANWVEGV 60

Query: 59  -YPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPG---HEEVLRYLQNFAR 114
                + ++  +   L                Y+    +          E+   ++    
Sbjct: 61  NGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGE 120

Query: 115 EFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVP 174
           +           ++    +   N+ +         +  + +           V  L    
Sbjct: 121 KLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTV 180

Query: 175 GIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLD 211
            + ++       +       ++  V  L G Y    D
Sbjct: 181 PLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDD 217

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.0 bits (113), Expect = 3e-07
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 4  HVAVIGAGAAGLVVGHELLR--EGHTVVVYEKGEQVGGSWIY 43
           + V+G+G AG      LL+      V +YEK     G   +
Sbjct: 3  QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF 44

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 48.0 bits (113), Expect = 3e-07
 Identities = 35/216 (16%), Positives = 61/216 (28%), Gaps = 15/216 (6%)

Query: 1   MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN--- 57
           M   VA+IGAG +GL++G  L + G   V+ E+                    ++     
Sbjct: 1   MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDY------VLGRIRAGVLEQGMVD 54

Query: 58  ---RYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR 114
                 V   + +   V+   E+        +              G  EV R L     
Sbjct: 55  LLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEARE 114

Query: 115 EFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVP 174
             G   V +     L        +    + ++D        D +  C+G   + R +   
Sbjct: 115 ACGATTVYQAAEVRL---HDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPA 171

Query: 175 GIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGL 210
                    +      I  P   + + L     S L
Sbjct: 172 ERMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 207

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 4e-07
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41
          V V+G G    ++   L  +G  V+  +K +  GG  
Sbjct: 8  VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEA 44

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 7/47 (14%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHT-------VVVYEKGEQVGGSWIY 43
          ++A++G+G +       LL+   T       V + E      G    
Sbjct: 4  YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRS 50

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45
          V +IG+G AGL         G  V++ EK    GG+    +
Sbjct: 26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAA 66

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 5  VAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIY 43
          V V+GAG+AGL   +E+ +     V + E+    GG    
Sbjct: 36 VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL 75

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45
          V V+GAG+AG        + G  V++ +K    GG+ + ++
Sbjct: 22 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISA 62

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 44.6 bits (104), Expect = 4e-06
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
          V V+G+G AG          G  V++ EK   +GG+
Sbjct: 19 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN 54

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 44.4 bits (103), Expect = 6e-06
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41
            VIG G  G  + + L +E     ++E G   G + 
Sbjct: 7  AVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTT 43

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 44.3 bits (103), Expect = 6e-06
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
          + V V+G+G  GL     L R+G++V +  +      S
Sbjct: 7  KRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVS 44

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 44.3 bits (103), Expect = 6e-06
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
          V V+GAG+ G+  G++L ++G   ++ +  +    +
Sbjct: 6  VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTN 41

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (101), Expect = 8e-06
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES 49
          V +IG G AG V   +  + G      EK  ++GG+ +      S
Sbjct: 8  VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPS 52

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (102), Expect = 9e-06
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 5   VAVIGAGAAGLVVGHEL--LREGHTVVVYEKGEQVGGSWIYTSETESDPL 52
           V ++GAG++GL   + +   R    V + E     GG      +  S  +
Sbjct: 53  VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMV 102

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 14/55 (25%), Positives = 21/55 (38%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRY 59
          V +IG G  G V   +  + G      EK   +GG+ +      S  L    + Y
Sbjct: 6  VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 60

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 16/96 (16%), Positives = 32/96 (33%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
           V ++G+G  G     EL+  G+ V +++ GE   G  I   +  +     + +++     
Sbjct: 7   VVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQ 66

Query: 65  LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYP 100
                       L+     P   +     V     P
Sbjct: 67  GQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNP 102

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 41.8 bits (97), Expect = 3e-05
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL 52
          V V+G G  G         EG  V + E+ + +GG  +      S  L
Sbjct: 9  VVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKAL 56

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41
          +AV+G   +GL     L   G  V VYE+  Q    +
Sbjct: 7  IAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGF 43

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 41.0 bits (95), Expect = 6e-05
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38
           V VIGAG  GL     +    H+V+     +   
Sbjct: 2  RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYA 36

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 41.1 bits (95), Expect = 7e-05
 Identities = 10/55 (18%), Positives = 15/55 (27%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRY 59
            VIG+G  G V    L + G    + E G                      + +
Sbjct: 10 ALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMW 64

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 41.1 bits (95), Expect = 7e-05
 Identities = 14/99 (14%), Positives = 25/99 (25%), Gaps = 3/99 (3%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG---VDPNRYPV 61
             VIG G    V    L   G   ++ E G+         +               +   
Sbjct: 5   AVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRT 64

Query: 62  HSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYP 100
            + L   L +++    +   A      NY+         
Sbjct: 65  EAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRG 103

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 40.8 bits (94), Expect = 8e-05
 Identities = 35/227 (15%), Positives = 64/227 (28%), Gaps = 20/227 (8%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
           + VIG G+ G+       R    V + EK   +GG+ +                 P    
Sbjct: 4   LIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNV------------GCVPKKIM 50

Query: 65  LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
              +   ++      +      + N    V+ R          Y QN +++         
Sbjct: 51  FNAASVHDILENSRHYGFDTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTA 110

Query: 125 HTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQM 184
                N  L++  K            E      +++  G+  V R      +        
Sbjct: 111 SFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNVE 170

Query: 185 HSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231
            ++NY + +  Q   V     YA G     D     K   I   ++ 
Sbjct: 171 TNNNYIVVDENQRTSV--NNIYAVG-----DCCMVKKSKEIEDLNLL 210

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 9/36 (25%), Positives = 13/36 (36%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
            VIG G AGL       ++G + +V          
Sbjct: 8  SLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSH 43

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 5  VAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIY 43
          +A++GAG A +     L R G++ + ++EK E VGG    
Sbjct: 7  IALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTS 46

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44
             IG G+ G+   +     G    + E   ++GG+ +  
Sbjct: 5  YIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNV 43

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43
            VIGAG AG+    ++ + G T  +  K        + 
Sbjct: 10 AVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVS 48

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 38.2 bits (87), Expect = 6e-04
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 5  VAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGS 40
          + +IGAG  G  +  EL+  G + + V ++G      
Sbjct: 4  IVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPG 40

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 4  HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVG 38
           + + GAG  GL     L + G   V + E   ++ 
Sbjct: 3  DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR 38

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44
            V+GAG  G V      + G  V + EKG  +GG  +  
Sbjct: 6  TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVCLNV 44

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 1  MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL 52
          + +HV VIG G  G  +       GHTVV+ ++ E +        E     +
Sbjct: 3  IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKV 54

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 16/71 (22%), Positives = 30/71 (42%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           +++AV+GAG AGL         GH V +++   ++GG +    +        +  RY   
Sbjct: 44  KNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRR 103

Query: 63  SSLYKSLRVNL 73
                 + + L
Sbjct: 104 MIEVTGVTLKL 114

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 6/41 (14%)

Query: 5  VAVIGAGAAGLVVGHELLR------EGHTVVVYEKGEQVGG 39
          V ++GAG AGL     L +      +   V + EK   +G 
Sbjct: 35 VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGA 75

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV 37
          +  AV+G G  G      L  +G +V+ ++   Q 
Sbjct: 2  KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQR 36

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 12/37 (32%), Positives = 16/37 (43%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41
          V VIGAG  G V   +  + G    + EK +   G  
Sbjct: 6  VIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT 42

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSE 46
          + V+G GA G +    L ++GH V  + +  Q   S      
Sbjct: 3  ITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVET 44

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.93
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.91
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.82
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.81
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.8
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.79
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.78
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.68
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.65
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.62
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.61
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.59
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.59
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.58
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.56
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.56
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.56
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.55
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.55
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.54
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.53
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.52
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.52
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.52
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.51
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.51
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.51
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.51
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.5
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.5
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.49
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.49
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.48
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.48
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.48
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.47
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.47
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.47
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.45
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.45
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.44
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.43
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.41
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.4
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.39
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.39
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.39
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.36
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.35
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.34
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.33
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	99.32
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.31
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.31
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.3
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.28
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.28
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.21
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.2
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.2
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.19
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.16
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.15
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.15
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.11
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.09
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.09
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	99.08
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.08
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.08
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.07
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.07
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.06
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.06
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.06
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.05
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.04
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.02
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.02
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.99
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.97
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.96
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.96
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.93
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.92
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.86
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.84
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.82
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.8
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.79
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.76
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.74
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.71
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.71
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.69
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.67
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.66
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.63
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.62
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.57
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.55
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.52
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.51
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.48
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.48
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.44
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.44
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.43
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.41
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.39
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.38
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.36
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.32
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.27
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.18
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.16
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.11
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.1
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.05
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.02
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.88
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.81
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.79
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.75
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.74
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.71
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.63
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.58
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.57
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	97.55
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.51
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.5
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.46
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.46
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.45
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.41
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.34
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.33
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.31
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.28
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.26
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.24
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.22
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.2
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.2
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.13
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.09
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.07
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.04
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.03
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	97.01
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.98
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.97
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.96
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.96
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.96
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.95
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.92
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.89
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.87
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.86
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.85
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.83
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.82
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.79
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.79
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.78
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.76
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.73
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.72
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	96.71
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.71
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.71
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.64
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.63
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.63
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.61
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.56
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	96.53
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.53
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.52
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.5
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.5
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.49
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.48
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	96.47
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.46
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.46
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.44
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.43
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	96.42
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.41
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.41
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	96.4
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.34
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.34
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.32
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.32
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.26
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.25
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	96.24
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.21
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	96.16
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.12
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	96.11
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.11
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	96.11
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	96.11
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.1
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.1
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.08
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.02
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	96.0
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.94
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	95.9
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	95.9
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.88
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	95.85
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.85
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.85
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.79
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	95.74
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	95.73
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.71
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.7
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.65
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.64
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	95.61
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.61
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.55
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.46
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	95.45
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.45
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.44
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.41
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.41
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.35
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.27
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.18
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.18
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.17
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	95.15
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	95.13
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.12
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.11
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.07
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	95.03
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.03
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.96
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	94.95
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	94.85
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.82
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	94.8
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	94.64
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.64
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	94.63
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	94.59
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	94.49
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	94.49
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.49
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.44
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	94.41
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.37
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	94.34
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	94.33
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	94.32
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	94.3
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.28
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	94.27
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	94.26
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.22
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.14
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	94.07
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	94.05
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	93.99
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	93.98
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.85
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.82
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.77
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	93.7
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	93.59
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.52
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	93.49
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	93.49
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	93.46
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.2
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.2
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.17
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	93.14
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.13
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	93.13
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.08
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.02
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	93.0
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.99
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.92
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	92.91
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.88
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	92.87
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	92.81
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	92.77
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	92.77
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	92.77
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	92.71
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	92.7
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	92.64
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	92.63
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	92.61
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	92.55
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	92.54
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	92.43
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	92.39
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	92.35
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	92.27
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	92.21
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	92.09
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	92.03
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	92.01
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	91.99
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	91.95
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	91.89
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	91.87
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	91.82
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	91.46
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	91.42
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.4
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	91.39
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	91.31
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	91.24
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	91.23
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	91.21
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	91.14
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	91.09
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	91.0
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	90.99
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	90.97
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	90.96
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	90.94
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	90.93
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	90.78
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	90.73
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	90.71
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.67
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	90.56
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	90.55
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	90.48
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	90.44
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	90.27
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	90.25
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	90.08
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	90.08
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	89.98
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	89.97
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	89.95
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	89.92
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	89.88
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	89.87
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	89.83
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	89.78
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	89.75
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	89.73
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	89.72
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	89.69
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	89.68
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	89.66
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	89.66
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	89.6
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	89.58
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	89.5
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	89.48
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	89.42
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.4
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	89.27
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	89.06
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	88.98
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	88.81
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	88.75
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	88.64
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	88.54
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	88.53
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	88.51
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	88.49
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	88.45
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	88.38
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	88.3
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	88.25
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	88.2
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	88.19
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	88.17
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	88.06
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	88.01
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	87.98
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	87.94
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	87.89
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	87.88
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	87.85
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	87.79
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	87.61
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	87.58
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	87.52
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	87.44
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	87.34
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	87.33
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	87.31
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	87.26
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	87.25
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	87.25
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	87.25
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	87.21
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	87.12
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	86.95
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	86.92
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	86.92
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	86.9
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	86.89
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	86.85
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	86.75
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	86.74
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	86.74
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	86.54
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	86.49
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	86.35
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	86.32
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	86.27
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	86.14
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	86.06
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	86.03
d1iowa1	96	D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge	85.92
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	85.89
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	85.76
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	85.65
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	85.57
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	85.51
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	85.41
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	85.33
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	85.31
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	85.3
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	85.26
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	85.25
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	85.23
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	85.07
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	85.04
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	85.03
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	84.82
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	84.79
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	84.74
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	84.66
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	84.65
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	84.64
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	84.57
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	84.56
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	84.56
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	84.5
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	84.37
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	84.33
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	84.28
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	84.25
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	84.17
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	84.1
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	83.97
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	83.92
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	83.73
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	83.65
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	83.62
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	83.55
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	83.54
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	83.49
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	83.42
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	83.35
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	83.31
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	83.31
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	83.15
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	83.1
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	82.98
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	82.92
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	82.9
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	82.83
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	82.7
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	82.5
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	82.46
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	82.43
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	82.35
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	82.35
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	82.24
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	82.18
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	82.08
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	81.99
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	81.65
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	81.65
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	81.59
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	81.55
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	81.53
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	81.42
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	81.42
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	81.37
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	81.33
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	81.28
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	81.27
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	81.27
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	81.23

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.93  E-value=3.5e-25  Score=175.15  Aligned_cols=164  Identities=30%  Similarity=0.547  Sum_probs=123.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCCcCceeeeCCCCCC--CC-----------CCCCCCCCCcccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETES--DP-----------LGVDPNRYPVHSSLY   66 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~~gg~~~~~~~~~~--~~-----------~~~~~~~~~~~~~~~   66 (259)
                      +++|+|||||++||++|..|++.+  .+|+||||++.+||.|.+......  ..           ...........+..|
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y   83 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   83 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence            579999999999999999998876  599999999999999976532210  00           000001112233456


Q ss_pred             ccceeccccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec
Q 024975           67 KSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK  146 (259)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g  146 (259)
                      ..+....+...+.+.+.++.       .+...|+++.++.+|+..+++..+..  ++++++|++++..+ +.|.|++.++
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~-------~~~~~f~~~~~~~~yl~~~~~~~~~~--I~~~t~V~~v~~~~-~~w~Vt~~~~  153 (335)
T d2gv8a1          84 RDLQTNTPIELMGYCDQSFK-------PQTLQFPHRHTIQEYQRIYAQPLLPF--IKLATDVLDIEKKD-GSWVVTYKGT  153 (335)
T ss_dssp             TTCBCSSCHHHHSCTTCCCC-------TTCCSSCBHHHHHHHHHHHHGGGGGG--EECSEEEEEEEEET-TEEEEEEEES
T ss_pred             hhhhcCCcHhhhhhhhhcCC-------cccccCCchHHHHHHHHHHHHHhhhc--ccCceEEEEEEecC-CEEEEEEEec
Confidence            66666666666666665553       34678899999999999999887777  99999999999987 8899999876


Q ss_pred             C--CceEEEEeCEEEEccCCCCCCccCCCCC
Q 024975          147 D--DVVEEETFDAVVVCNGHFSVPRLAQVPG  175 (259)
Q Consensus       147 ~--~~~~~~~ad~VIlAtG~~s~~~~~~~~g  175 (259)
                      .  ++.....||+||+|||+++.|.+|.+++
T Consensus       154 ~~~~~~~~~~~d~VI~AtG~~s~p~~~~~~~  184 (335)
T d2gv8a1         154 KAGSPISKDIFDAVSICNGHYEVPYTGYLYS  184 (335)
T ss_dssp             STTCCEEEEEESEEEECCCSSSSBCCCBCCC
T ss_pred             CCCCeEEEEEeeEEEEcccccccceeccccc
Confidence            5  3344567999999999999998886543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.91  E-value=7.2e-25  Score=169.48  Aligned_cols=149  Identities=27%  Similarity=0.396  Sum_probs=113.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .||+|||||++||++|.+|.++|++++|||+++.+||+|..+.                    |+......+...+.+..
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~--------------------ypg~~~d~~~~~~~~s~   67 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNR--------------------YPGARCDIESIEYCYSF   67 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCC--------------------CTTCBCSSCTTTSSCCS
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCC--------------------CCCceeccccccccccc
Confidence            5999999999999999999999999999999999999997641                    11111111111111111


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC-CcEEEEEEecCCceEEEEeCEEEEc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .+...   ....+...||.+.++..|++++++++++...++++++|+++..+++ +.|.|.+.++.    ..++|+||+|
T Consensus        68 ~~~~~---~~~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~----~~~~~~~i~a  140 (298)
T d1w4xa1          68 SEEVL---QEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGD----RIRARYLIMA  140 (298)
T ss_dssp             CHHHH---HHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCC----EEEEEEEEEC
T ss_pred             ccccc---CCCCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeecccccc----ccccceEEEe
Confidence            11000   0013456788899999999999999999777999999999997654 67999998876    8999999999


Q ss_pred             cCCCCCCccCCCCCCCC
Q 024975          162 NGHFSVPRLAQVPGIDS  178 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~  178 (259)
                      ||..+.|..|.+++++.
T Consensus       141 tG~ls~~~~p~~~~~~i  157 (298)
T d1w4xa1         141 SGQLSDALTGALFKIDI  157 (298)
T ss_dssp             CCSCCCCTTHHHHTSEE
T ss_pred             ecccccccCCccccccc
Confidence            99999999888777663

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=4.6e-22  Score=140.99  Aligned_cols=129  Identities=26%  Similarity=0.455  Sum_probs=97.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+||||||+||++|..|+++|++|+|||+.+.+||.+....                                    
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~------------------------------------   86 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAK------------------------------------   86 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHT------------------------------------
T ss_pred             CcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEE------------------------------------
Confidence            57999999999999999999999999999999999998765310                                    


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                                   ..+.+....++.+++.+.+++.+++  ++++++|+.    +               ....+|.||+|
T Consensus        87 -------------~~p~~~~~~~~~~~~~~~~~~~gV~--i~l~~~Vt~----~---------------~~~~~d~vilA  132 (179)
T d1ps9a3          87 -------------QIPGKEEFYETLRYYRRMIEVTGVT--LKLNHTVTA----D---------------QLQAFDETILA  132 (179)
T ss_dssp             -------------TSTTCTTHHHHHHHHHHHHHHHTCE--EEESCCCCS----S---------------SSCCSSEEEEC
T ss_pred             -------------eCcccchHHHHHHHHHHhhhcCCeE--EEeCCEEcc----c---------------ccccceeEEEe
Confidence                         0011122267888999999999999  999887742    1               13468999999


Q ss_pred             cCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHH-HHHHhccc
Q 024975          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDI-KRDLAGFA  220 (259)
Q Consensus       162 tG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~-a~~l~~~~  220 (259)
                      ||  +.++.+.+|+.+                  .++++.|+|+|.+++|+ +......|
T Consensus       133 tG--~~~~~~~~pg~~------------------~g~~v~vigggd~a~~~~~~~Av~~G  172 (179)
T d1ps9a3         133 SG--IPNRALAQPLID------------------SGKTVHLIGGCDVAMELDARRAIAQG  172 (179)
T ss_dssp             CC--EECCTTHHHHHT------------------TTCCEEECGGGTCCSSCCHHHHHHHH
T ss_pred             ec--CCCcccccchhc------------------cCCEEEEECCcHhhhhccchhhhhcc
Confidence            99  556655555432                  25889999999999986 44333433

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.81  E-value=9.8e-21  Score=143.40  Aligned_cols=162  Identities=20%  Similarity=0.257  Sum_probs=95.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-----CCccccccccc-eeccc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-----YPVHSSLYKSL-RVNLP   74 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~   74 (259)
                      |.|||+||||||+|+++|+.|+++|++|+|+||++.+|+...................     ........... .....
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN   80 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhh
Confidence            7899999999999999999999999999999999988765433211111000000000     00000000000 00000


Q ss_pred             ccccee---cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceE
Q 024975           75 RELMGF---QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE  151 (259)
Q Consensus        75 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~  151 (259)
                      .....+   ...++...  ..............+.+.|.+.+++.+++  ++++++|+++..+++..+.|.++++.    
T Consensus        81 ~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~i~~~L~~~~~~~gv~--i~~~~~v~~i~~~~~~~~~v~~~~g~----  152 (251)
T d2i0za1          81 EDIITFFENLGVKLKEE--DHGRMFPVSNKAQSVVDALLTRLKDLGVK--IRTNTPVETIEYENGQTKAVILQTGE----  152 (251)
T ss_dssp             HHHHHHHHHTTCCEEEC--GGGEEEETTCCHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEETTCC----
T ss_pred             HHHHHHHHhcCCccccc--cccceecccccHHHHHHHHHHHHHHcCCc--ccCCcEEEEEEEECCEEEEEEeCCCC----
Confidence            000000   00011000  00000011123367888888889899999  99999999999887344457776655    


Q ss_pred             EEEeCEEEEccCCCCCCcc
Q 024975          152 EETFDAVVVCNGHFSVPRL  170 (259)
Q Consensus       152 ~~~ad~VIlAtG~~s~~~~  170 (259)
                      .+++|+||+|||+.|.|.+
T Consensus       153 ~i~a~~vI~AtGg~S~p~~  171 (251)
T d2i0za1         153 VLETNHVVIAVGGKSVPQT  171 (251)
T ss_dssp             EEECSCEEECCCCSSSGGG
T ss_pred             eEecCeEEEccCCcccccc
Confidence            7999999999998887754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.80  E-value=4.1e-23  Score=154.78  Aligned_cols=163  Identities=13%  Similarity=0.101  Sum_probs=97.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+||||||+||++|..|+++|++|+|+|+++.+||.|......                                  
T Consensus        49 ~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~----------------------------------   94 (233)
T d1djqa3          49 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAAL----------------------------------   94 (233)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTS----------------------------------
T ss_pred             CceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCcccccccc----------------------------------
Confidence            4799999999999999999999999999999999999988752100                                  


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh---CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF---GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                        +.             +........+....+.+.   +..  +.       +..   +...+.....    ..+.+|+|
T Consensus        95 --~~-------------~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~---~~~~~~~~~~----~~~~~d~v  143 (233)
T d1djqa3          95 --PG-------------LGEWSYHRDYRETQITKLLKKNKE--SQ-------LAL---GQKPMTADDV----LQYGADKV  143 (233)
T ss_dssp             --TT-------------CGGGGHHHHHHHHHHHHHHTTCTT--CE-------EEC---SCCCCCHHHH----HTSCCSEE
T ss_pred             --ce-------------eecccccchhHHHHHHHHhhccee--ee-------eec---ccccccchhh----hhhcccee
Confidence              00             000022223333333222   222  11       111   1111111111    14679999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC
Q 024975          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (259)
Q Consensus       159 IlAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~  231 (259)
                      |+|||+  .+..|.+++.........+...........+++++|+|+|++|+|+|..|.+.+.+|++++|++.
T Consensus       144 viAtG~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~  214 (233)
T d1djqa3         144 IIATGA--SECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRET  214 (233)
T ss_dssp             EECCCE--ECCHHHHHHHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCC
T ss_pred             eeccCC--CcccccccccccccccchhhhhhhhhccccCCceeEecCchHHHHHHHHHHhcCCceEEEEeccc
Confidence            999995  44433322211100000000000011122457899999999999999999999999999999983

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.79  E-value=9.3e-20  Score=138.07  Aligned_cols=159  Identities=19%  Similarity=0.375  Sum_probs=91.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCC--CCCCCCcc-cc-ccccceecccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGV--DPNRYPVH-SS-LYKSLRVNLPREL   77 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~--~~~~~~~~-~~-~~~~~~~~~~~~~   77 (259)
                      .+||+||||||+|++||+.|+++|.+|+|+||++.+|+.+.......++....  .+...... .. ....+........
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDF   83 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccch
Confidence            48999999999999999999999999999999998874332211111100000  00000000 00 0000000000000


Q ss_pred             ceec---CCCCCccCCCCCCCCCCCC--CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC-cEEEEEEecCCceE
Q 024975           78 MGFQ---AYPFVARNYEGSVDLRRYP--GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVE  151 (259)
Q Consensus        78 ~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~  151 (259)
                      ..+.   ...+...     .....|+  ....+.+.|.+.+++.+++  ++++++|+++.+.+++ ...+.+..+.   .
T Consensus        84 ~~~~~~~g~~~~~~-----~~~~~~~~~~a~~i~~~L~~~~~~~gV~--i~~~~~V~~i~~~~~~~~v~~~~~~~~---~  153 (253)
T d2gqfa1          84 ISLVAEQGITYHEK-----ELGQLFCDEGAEQIVEMLKSECDKYGAK--ILLRSEVSQVERIQNDEKVRFVLQVNS---T  153 (253)
T ss_dssp             HHHHHHTTCCEEEC-----STTEEEETTCTHHHHHHHHHHHHHHTCE--EECSCCEEEEEECCSCSSCCEEEEETT---E
T ss_pred             hhhhhhcCcceeee-----cCCccccccchhHHHHHHHHHHHHcCCC--eecCceEEEEEeecCCceeEEEEecCC---E
Confidence            0000   0111110     1111122  2367889999999999999  9999999999987632 1122222222   4


Q ss_pred             EEEeCEEEEccCCCCCCcc
Q 024975          152 EETFDAVVVCNGHFSVPRL  170 (259)
Q Consensus       152 ~~~ad~VIlAtG~~s~~~~  170 (259)
                      .++||+||+|||+.|.|.+
T Consensus       154 ~~~a~~VIiAtGG~S~p~~  172 (253)
T d2gqfa1         154 QWQCKNLIVATGGLSMPGL  172 (253)
T ss_dssp             EEEESEEEECCCCSSCGGG
T ss_pred             EEEeCEEEEcCCccccccc
Confidence            7999999999998776654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.7e-21  Score=144.50  Aligned_cols=190  Identities=14%  Similarity=0.215  Sum_probs=107.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceeccccccce
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMG   79 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   79 (259)
                      +.|||+||||||+|+++|.+|++.|.+|+|+|++ .+||+|...        ++.|.+.+.... .+..+..........
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~~~--------gc~p~k~l~~~a~~~~~~~~~~~~~g~~   71 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNV--------GCVPKKVMWHAAQIREAIHMYGPDYGFD   71 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHHTTGGGGTEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEecc--------cccccccchhhHHHHHHHHhhhhhcCcc
Confidence            4699999999999999999999999999999995 599998654        333332222211 111111111111111


Q ss_pred             ecC--CCCCccCCCCCCCCCCCCCHH----HHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEE
Q 024975           80 FQA--YPFVARNYEGSVDLRRYPGHE----EVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE  153 (259)
Q Consensus        80 ~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~  153 (259)
                      ...  ..+...          .....    .+...++..+.+.+++  +.........     . ..+.. + .   ..+
T Consensus        72 ~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~l~~~gV~--v~~~~~~~~~-----~-~~~~~-~-~---~~~  128 (217)
T d1gesa1          72 TTINKFNWETL----------IASRTAYIDRIHTSYENVLGKNNVD--VIKGFARFVD-----A-KTLEV-N-G---ETI  128 (217)
T ss_dssp             EEEEEECHHHH----------HHHHHHHHHHHHHHHHHHHHHTTCE--EEESCCEEEE-----T-TEEEE-T-T---EEE
T ss_pred             CCcccccHHHH----------HHHHHHHHHHHHHHHHHHHhCCeEE--EEeeecccce-----e-eeecC-C-C---cee
Confidence            000  000000          00001    1222333444555776  5554332211     1 11111 1 1   478


Q ss_pred             EeCEEEEccCCCCCCccCCCCCCCCCC----CceEEcccC---CCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEE
Q 024975          154 TFDAVVVCNGHFSVPRLAQVPGIDSWP----GKQMHSHNY---RIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVH  224 (259)
Q Consensus       154 ~ad~VIlAtG~~s~~~~~~~~g~~~~~----~~~~~~~~~---~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~  224 (259)
                      .++.+++|||  +.|.+|.+|+.+...    +.......+   +.......++|.++|+|.+|+|++..+.+.|..|+
T Consensus       129 ~~~~~iiatG--~~p~ip~ip~~~~l~l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~  204 (217)
T d1gesa1         129 TADHILIATG--GRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLS  204 (217)
T ss_dssp             EEEEEEECCC--EEECCCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHHH
T ss_pred             eeeeeeeecC--ccccCCCCCCcCCcccccccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHHHHHHHHHHHHH
Confidence            9999999999  788888877655421    111111111   11112234689999999999999999988887763

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=4.8e-16  Score=102.50  Aligned_cols=96  Identities=18%  Similarity=0.188  Sum_probs=82.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +++++|||||+.|+.+|..|.+.|.+|+|+|+.+.+.                                           
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l-------------------------------------------   57 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-------------------------------------------   57 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------------------
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhh-------------------------------------------
Confidence            4789999999999999999999999999999986441                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +.             +.  .++.+++.+.+++.|++  ++++++|+.+...+++.+.+.+++|.    .+.+|.||+|
T Consensus        58 --~~-------------~d--~~~~~~~~~~l~~~GV~--~~~~~~v~~i~~~~~~~~~v~~~~g~----~~~~D~vi~a  114 (116)
T d1gesa2          58 --PS-------------FD--PMISETLVEVMNAEGPQ--LHTNAIPKAVVKNTDGSLTLELEDGR----SETVDCLIWA  114 (116)
T ss_dssp             --TT-------------SC--HHHHHHHHHHHHHHSCE--EECSCCEEEEEECTTSCEEEEETTSC----EEEESEEEEC
T ss_pred             --hh-------------cc--hhhHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCcEEEEEECCCC----EEEcCEEEEe
Confidence              00             00  77889999999999999  99999999999876566788888775    8999999999


Q ss_pred             cC
Q 024975          162 NG  163 (259)
Q Consensus       162 tG  163 (259)
                      +|
T Consensus       115 ~G  116 (116)
T d1gesa2         115 IG  116 (116)
T ss_dssp             SC
T ss_pred             cC
Confidence            98

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.65  E-value=1.8e-16  Score=121.61  Aligned_cols=59  Identities=22%  Similarity=0.305  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCc
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR  169 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~  169 (259)
                      ..+...+.+.+++.|++  ++.+++|++++..+ +.|.|.++++     .+.+|.||+|+|.|+...
T Consensus       150 ~~~~~~l~~~a~~~Gv~--i~~~~~V~~i~~~~-~~v~V~t~~g-----~i~a~~VViAaG~~s~~l  208 (281)
T d2gf3a1         150 ENCIRAYRELAEARGAK--VLTHTRVEDFDISP-DSVKIETANG-----SYTADKLIVSMGAWNSKL  208 (281)
T ss_dssp             HHHHHHHHHHHHHTTCE--EECSCCEEEEEECS-SCEEEEETTE-----EEEEEEEEECCGGGHHHH
T ss_pred             ccccccccccccccccc--ccCCcEEEEEEEEC-CEEEEEECCc-----EEEcCEEEECCCCcchhh
Confidence            67888999999999999  99999999999887 7788888764     689999999999876543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.62  E-value=2.7e-16  Score=120.28  Aligned_cols=59  Identities=22%  Similarity=0.178  Sum_probs=50.3

Q ss_pred             CHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ....+...|.+.+.+.|++  ++.+++|+.++.+. +.|.|.++++     .+.||.||+|+|.|+.
T Consensus       149 ~~~~~~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~-~~~~V~t~~g-----~i~a~~vV~AaG~~s~  207 (276)
T d1ryia1         149 EPYFVCKAYVKAAKMLGAE--IFEHTPVLHVERDG-EALFIKTPSG-----DVWANHVVVASGVWSG  207 (276)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EETTCCCCEEECSS-SSEEEEETTE-----EEEEEEEEECCGGGTH
T ss_pred             ecccchhHHHHHHHHcCCE--EecceEEEeEEeec-ceEEEecCCe-----EEEcCEEEECCCccHH
Confidence            4477888888999999999  99999999999765 7898888764     6899999999998763

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.61  E-value=1.4e-14  Score=95.76  Aligned_cols=98  Identities=27%  Similarity=0.368  Sum_probs=83.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +.+++|||||+.|+-+|..|++.|.+|+++++.+.+-                                           
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll-------------------------------------------   58 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL-------------------------------------------   58 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-------------------------------------------
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC-------------------------------------------
Confidence            5789999999999999999999999999999986431                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +.             +.  .++.+++++.+++.|++  ++.+++|++++..+ +..++.+.++++ .+++.+|.|++|
T Consensus        59 --~~-------------~d--~ei~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~-~~v~v~~~~~~~-~~~~~~D~vlvA  117 (119)
T d3lada2          59 --PA-------------VD--EQVAKEAQKILTKQGLK--ILLGARVTGTEVKN-KQVTVKFVDAEG-EKSQAFDKLIVA  117 (119)
T ss_dssp             --TT-------------SC--HHHHHHHHHHHHHTTEE--EEETCEEEEEEECS-SCEEEEEESSSE-EEEEEESEEEEC
T ss_pred             --Cc-------------cc--chhHHHHHHHHHhcCce--eecCcEEEEEEEeC-CEEEEEEEECCC-CEEEECCEEEEe
Confidence              10             00  78899999999999999  99999999999876 678888877543 357899999999


Q ss_pred             cC
Q 024975          162 NG  163 (259)
Q Consensus       162 tG  163 (259)
                      +|
T Consensus       118 vG  119 (119)
T d3lada2         118 VG  119 (119)
T ss_dssp             SC
T ss_pred             eC
Confidence            98

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.59  E-value=2e-15  Score=117.20  Aligned_cols=164  Identities=18%  Similarity=0.147  Sum_probs=91.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCC-------CCCCCC------------CCcc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL-------GVDPNR------------YPVH   62 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~-------~~~~~~------------~~~~   62 (259)
                      .+||+|||+|++|+++|+.|+++|.+|+|+||.+..||.............       ......            ....
T Consensus        16 ~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d   95 (308)
T d1y0pa2          16 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND   95 (308)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhccc
Confidence            379999999999999999999999999999999887765433211110000       000000            0000


Q ss_pred             ccccccceeccccccceecC--CCCCccCCC--CCC----CCCCC-CCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEE
Q 024975           63 SSLYKSLRVNLPRELMGFQA--YPFVARNYE--GSV----DLRRY-PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL  133 (259)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~----~~~~~-~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~  133 (259)
                      ......+....+.....+..  .++......  ...    ..... .....+...+.+.+.+.+++  ++++++++++..
T Consensus        96 ~~lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~--i~~~~~v~~li~  173 (308)
T d1y0pa2          96 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNID--LRMNTRGIEVLK  173 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCE--EESSEEEEEEEE
T ss_pred             hHHHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccce--EEEeeccchhhh
Confidence            00000000000000000000  011100000  000    00011 11245667777778888999  999999999988


Q ss_pred             eCCC-cEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          134 VESN-KWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       134 ~~~~-~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ++++ ...|...+.++....+.++.||+|||.++.
T Consensus       174 ~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~  208 (308)
T d1y0pa2         174 DDKGTVKGILVKGMYKGYYWVKADAVILATGGFAK  208 (308)
T ss_dssp             CTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             hcccccccccccccccceeEeecCeEEEccCcccc
Confidence            7643 345777776666678999999999997654

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.59  E-value=4.6e-17  Score=123.40  Aligned_cols=52  Identities=25%  Similarity=0.514  Sum_probs=44.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS   63 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~   63 (259)
                      ||++||||||+|+++|.++++.|.+|+|+|+. .+||+|...        +|.|++.++.+
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~n~--------gciPsK~l~~~   53 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVNV--------GCVPKKIMFNA   53 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHHT--------SHHHHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEEee--------CCcchHHHHhh
Confidence            89999999999999999999999999999995 589999765        66665554443

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.58  E-value=7.5e-14  Score=92.08  Aligned_cols=96  Identities=19%  Similarity=0.250  Sum_probs=79.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +++++|||||+.|+-+|..|.+.|.+|+|+|+.+.+...                                         
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-----------------------------------------   60 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-----------------------------------------   60 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------------------------------
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-----------------------------------------
Confidence            578999999999999999999999999999998754100                                         


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                                       +.  .++.+++.+.+++.|++  ++++++|++++..+ +.+.+.+..+ ++.+.+.+|.|++.
T Consensus        61 -----------------~d--~~~~~~l~~~l~~~GI~--i~~~~~v~~i~~~~-~~~~v~~~~~-g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          61 -----------------FE--KQMAAIIKKRLKKKGVE--VVTNALAKGAEERE-DGVTVTYEAN-GETKTIDADYVLVT  117 (117)
T ss_dssp             -----------------SC--HHHHHHHHHHHHHTTCE--EEESEEEEEEEEET-TEEEEEEEET-TEEEEEEESEEEEC
T ss_pred             -----------------cc--chhHHHHHHHHHhcCCE--EEcCCEEEEEEEcC-CEEEEEEEeC-CCEEEEEeEEEEEC
Confidence                             00  67889999999999999  99999999999887 6677777653 34467999999974

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.56  E-value=4.1e-14  Score=93.36  Aligned_cols=96  Identities=18%  Similarity=0.242  Sum_probs=80.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~---g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (259)
                      +++++|||||+.|+-+|..|.+.   |.+|+++|+.+.+.                                        
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il----------------------------------------   57 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL----------------------------------------   57 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS----------------------------------------
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc----------------------------------------
Confidence            47899999999999999877664   78999999976431                                        


Q ss_pred             eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                           +             .+.  .++.+++++.+++.|++  ++++++|+++...+++...+.+++|.    .+.+|.|
T Consensus        58 -----~-------------~~d--~~~~~~~~~~l~~~GI~--v~~~~~v~~i~~~~~g~~~v~~~~g~----~i~~D~V  111 (117)
T d1feca2          58 -----R-------------GFD--SELRKQLTEQLRANGIN--VRTHENPAKVTKNADGTRHVVFESGA----EADYDVV  111 (117)
T ss_dssp             -----T-------------TSC--HHHHHHHHHHHHHTTEE--EEETCCEEEEEECTTSCEEEEETTSC----EEEESEE
T ss_pred             -----c-------------ccc--chhhHHHHHHHhhCcEE--EEcCCEEEEEEECCCCEEEEEECCCC----EEEcCEE
Confidence                 0             010  77889999999999999  99999999999876566678888776    8999999


Q ss_pred             EEccC
Q 024975          159 VVCNG  163 (259)
Q Consensus       159 IlAtG  163 (259)
                      |+|+|
T Consensus       112 i~a~G  116 (117)
T d1feca2         112 MLAIG  116 (117)
T ss_dssp             EECSC
T ss_pred             EEecC
Confidence            99999

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=1.1e-13  Score=91.76  Aligned_cols=98  Identities=26%  Similarity=0.386  Sum_probs=80.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +++++|||||+.|+-+|..|.+.|.+|+|+|+.+.+-                                           
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l-------------------------------------------   59 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG-------------------------------------------   59 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------------------
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc-------------------------------------------
Confidence            5789999999999999999999999999999986541                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC-cEEEEEEecC-CceEEEEeCEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKD-DVVEEETFDAVV  159 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~-~~~~~~~ad~VI  159 (259)
                        |.             +.  .++.++++..+++.|++  ++++++|++++..+++ ...+...++. +....+++|.|+
T Consensus        60 --~~-------------~d--~ei~~~l~~~l~~~GV~--i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vl  120 (122)
T d1v59a2          60 --AS-------------MD--GEVAKATQKFLKKQGLD--FKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLL  120 (122)
T ss_dssp             --SS-------------SC--HHHHHHHHHHHHHTTCE--EECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEE
T ss_pred             --hh-------------hh--hhhHHHHHHHHHhccce--EEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEE
Confidence              10             00  78899999999999999  9999999999987643 3455666654 566789999999


Q ss_pred             Ec
Q 024975          160 VC  161 (259)
Q Consensus       160 lA  161 (259)
                      +|
T Consensus       121 vA  122 (122)
T d1v59a2         121 VA  122 (122)
T ss_dssp             EC
T ss_pred             EC
Confidence            87

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.56  E-value=2e-14  Score=95.54  Aligned_cols=99  Identities=19%  Similarity=0.200  Sum_probs=83.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +.+++|||||+.|+-+|..+++.|.+|+++|+.+.+.                                           
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il-------------------------------------------   62 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM-------------------------------------------   62 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc-------------------------------------------
Confidence            4689999999999999999999999999999986441                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +.. .              .++.+++.+.+++.+++  ++.++++.+++..+ +...+.++++++..+.+.+|.|++|
T Consensus        63 --~~~-d--------------~~~~~~l~~~l~~~gv~--~~~~~~v~~v~~~~-~g~~v~~~~~~g~~~~i~~D~vl~A  122 (125)
T d1ojta2          63 --QGA-D--------------RDLVKVWQKQNEYRFDN--IMVNTKTVAVEPKE-DGVYVTFEGANAPKEPQRYDAVLVA  122 (125)
T ss_dssp             --TTS-C--------------HHHHHHHHHHHGGGEEE--EECSCEEEEEEEET-TEEEEEEESSSCCSSCEEESCEEEC
T ss_pred             --ccc-h--------------hhHHHHHHHHHHHcCcc--cccCcEEEEEEEcC-CcEEEEEEeCCCCeEEEEcCEEEEe
Confidence              100 0              78899999999999999  99999999999887 5677777776555567999999999


Q ss_pred             cC
Q 024975          162 NG  163 (259)
Q Consensus       162 tG  163 (259)
                      +|
T Consensus       123 ~G  124 (125)
T d1ojta2         123 AG  124 (125)
T ss_dssp             CC
T ss_pred             cC
Confidence            99

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.55  E-value=4.4e-14  Score=95.14  Aligned_cols=97  Identities=24%  Similarity=0.296  Sum_probs=78.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++++|||||+.|+.+|..|++.|.+|+++|+.+.+...                                         
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~-----------------------------------------   73 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER-----------------------------------------   73 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT-----------------------------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccc-----------------------------------------
Confidence            368999999999999999999999999999998643100                                         


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCC-c-EEEEEEecCCceEEEEeCEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-K-WKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~-~~v~~~~g~~~~~~~~ad~VI  159 (259)
                                      .++  .++.+++++..++.|++  ++++++|+.++...++ . ..+.+++|.    .+.+|.||
T Consensus        74 ----------------~~~--~~~~~~~~~~~~~~GV~--i~~~~~v~~i~~~~~~~~v~~v~~~~G~----~i~~D~vi  129 (133)
T d1q1ra2          74 ----------------VTA--PPVSAFYEHLHREAGVD--IRTGTQVCGFEMSTDQQKVTAVLCEDGT----RLPADLVI  129 (133)
T ss_dssp             ----------------TSC--HHHHHHHHHHHHHHTCE--EECSCCEEEEEECTTTCCEEEEEETTSC----EEECSEEE
T ss_pred             ----------------ccc--hhhhhhhhhcccccccE--EEeCCeEEEEEEeCCCceEEEEECCCCC----EEECCEEE
Confidence                            011  67888899999999999  9999999999886532 2 236666665    79999999


Q ss_pred             EccC
Q 024975          160 VCNG  163 (259)
Q Consensus       160 lAtG  163 (259)
                      +|+|
T Consensus       130 ~a~G  133 (133)
T d1q1ra2         130 AGIG  133 (133)
T ss_dssp             ECCC
T ss_pred             EeeC
Confidence            9998

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.55  E-value=5.9e-15  Score=115.22  Aligned_cols=164  Identities=23%  Similarity=0.203  Sum_probs=92.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCC-------CCCCCCC------------CCcc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-------LGVDPNR------------YPVH   62 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~-------~~~~~~~------------~~~~   62 (259)
                      .+||+|||+|++|+++|+.|+++|.+|+|+||.+..||............       .......            ....
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d  102 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND  102 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred             cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccC
Confidence            36999999999999999999999999999999988776543322111000       0000000            0000


Q ss_pred             ccccccceeccccccceec--CCCCCccCCC--CCC-----CCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEE
Q 024975           63 SSLYKSLRVNLPRELMGFQ--AYPFVARNYE--GSV-----DLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL  133 (259)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~  133 (259)
                      ......+..........+.  ..++......  ...     ....-.....+...+...+.+.+++  ++++++|+++..
T Consensus       103 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~--i~~~t~v~~li~  180 (322)
T d1d4ca2         103 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTD--IRLNSRVVRILE  180 (322)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCE--EETTEEEEEEEC
T ss_pred             HHHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCce--EEEeeecccccc
Confidence            0000000000000000000  0111100000  000     0001112367788888888889999  999999999987


Q ss_pred             eCC-CcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          134 VES-NKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       134 ~~~-~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      +++ ....|...+..++...+.++.||+|||.++.
T Consensus       181 d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~  215 (322)
T d1d4ca2         181 DASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  215 (322)
T ss_dssp             CSSSCCCEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             cccccccceEEEeecccEEEEeCCeEEEcCCCccc
Confidence            653 3445666665555667999999999997654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.54  E-value=8.9e-14  Score=91.35  Aligned_cols=95  Identities=16%  Similarity=0.362  Sum_probs=79.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +.+|+|||||+.|+-+|..|.+.|.+|+|+|+.+.+.                                           
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il-------------------------------------------   58 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL-------------------------------------------   58 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC-------------------------------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcccc-------------------------------------------
Confidence            4689999999999999999999999999999976441                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEE-EeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE-TFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~-~ad~VIl  160 (259)
                        +             .|.  .++.+++.+.+++.|++  ++++++|++++..+++.+.+.+++|.    .+ .+|.||+
T Consensus        59 --~-------------~~d--~~~~~~~~~~l~~~gV~--i~~~~~v~~i~~~~~~~~~v~~~~G~----~~~~~D~Vi~  115 (117)
T d1onfa2          59 --R-------------KFD--ESVINVLENDMKKNNIN--IVTFADVVEIKKVSDKNLSIHLSDGR----IYEHFDHVIY  115 (117)
T ss_dssp             --T-------------TSC--HHHHHHHHHHHHHTTCE--EECSCCEEEEEESSTTCEEEEETTSC----EEEEESEEEE
T ss_pred             --c-------------ccc--HHHHHHHHHHHHhCCCE--EEECCEEEEEEEcCCCeEEEEECCCC----EEEeCCEEEE
Confidence              0             011  88899999999999999  99999999999887667788888875    44 5799999


Q ss_pred             cc
Q 024975          161 CN  162 (259)
Q Consensus       161 At  162 (259)
                      |.
T Consensus       116 AI  117 (117)
T d1onfa2         116 CV  117 (117)
T ss_dssp             CC
T ss_pred             eC
Confidence            83

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.53  E-value=7.2e-15  Score=111.42  Aligned_cols=146  Identities=15%  Similarity=0.031  Sum_probs=81.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCc----eeeeCCCCC--CCCCCCCCCCCCccccccccceecccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG----SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPR   75 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (259)
                      ..+|+||||||+|+++|..|+++|++|+||||++.++.    .....+...  ....+.           ........ .
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~-----------~~~~~~~~-~   71 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGV-----------ELDSISVP-S   71 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTC-----------CGGGTCBC-C
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCc-----------chhhhccC-C
Confidence            57899999999999999999999999999999866532    222110000  000000           00000000 0


Q ss_pred             ccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHH-HHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEE
Q 024975           76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFA-REFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET  154 (259)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~  154 (259)
                      ....+..+.....   .......+. .......+.... ...+..  ++++++++++...+ +.+++.+.+|.    +++
T Consensus        72 ~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~-~~v~v~~~dG~----~~~  140 (265)
T d2voua1          72 SSMEYVDALTGER---VGSVPADWR-FTSYDSIYGGLYELFGPER--YHTSKCLVGLSQDS-ETVQMRFSDGT----KAE  140 (265)
T ss_dssp             CEEEEEETTTCCE---EEEEECCCC-EEEHHHHHHHHHHHHCSTT--EETTCCEEEEEECS-SCEEEEETTSC----EEE
T ss_pred             CcceeEeccCCce---ecccccccc-cchhHHHHHHHHHhcccce--eecCcEEEEEEeeC-CceEEEECCCC----EEE
Confidence            0000000000000   000000011 012222222222 233566  89999999999876 77999998876    899


Q ss_pred             eCEEEEccCCCCCCcc
Q 024975          155 FDAVVVCNGHFSVPRL  170 (259)
Q Consensus       155 ad~VIlAtG~~s~~~~  170 (259)
                      +|++|.|+|.++..+.
T Consensus       141 ~d~~v~adG~~s~~r~  156 (265)
T d2voua1         141 ANWVIGADGGASVVRK  156 (265)
T ss_dssp             ESEEEECCCTTCHHHH
T ss_pred             EEEEeccccccccccc
Confidence            9999999998765443

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.52  E-value=2e-16  Score=118.35  Aligned_cols=42  Identities=19%  Similarity=0.191  Sum_probs=38.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC-------CcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG-------HTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g-------~~v~v~e~~~~~gg~~~~   43 (259)
                      +++|+||||||+||+||++|.++|       ++|+|||+.+.+||.|++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~   50 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRS   50 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeee
Confidence            579999999999999999999987       479999999999998875

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.52  E-value=1.7e-14  Score=112.33  Aligned_cols=164  Identities=19%  Similarity=0.219  Sum_probs=92.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCC-------CCCCCCC------------CCcc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-------LGVDPNR------------YPVH   62 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~-------~~~~~~~------------~~~~   62 (259)
                      .+||+|||+|++||++|+.|+++|.+|+|+||.+..||............       .+.....            ....
T Consensus        19 ~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d   98 (317)
T d1qo8a2          19 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQND   98 (317)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccc
Confidence            37999999999999999999999999999999987765533321110000       0000000            0000


Q ss_pred             ccccccceeccccccceec--CCCCCccCCCCC-CCCC------CCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEE
Q 024975           63 SSLYKSLRVNLPRELMGFQ--AYPFVARNYEGS-VDLR------RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL  133 (259)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~------~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~  133 (259)
                      ......+....+.....+.  ..++........ ....      .......+...|.+.+++.+++  ++++++++++..
T Consensus        99 ~~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~--i~~~~~v~~l~~  176 (317)
T d1qo8a2          99 IKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGID--TRLNSRVVKLVV  176 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCC--EECSEEEEEEEE
T ss_pred             hhHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccce--eeeccchhheee
Confidence            0000000000000000000  011111000000 0000      0112356888888889999999  999999999987


Q ss_pred             eCCC-cEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          134 VESN-KWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       134 ~~~~-~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ++++ ...+...+.+++...+.++.||+|||.++.
T Consensus       177 ~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~  211 (317)
T d1qo8a2         177 NDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  211 (317)
T ss_dssp             CTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             cccccceeeEeecccceEEEEeccceEEecccccc
Confidence            6544 344666665666677999999999997654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.52  E-value=5.6e-14  Score=92.33  Aligned_cols=95  Identities=24%  Similarity=0.309  Sum_probs=74.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +.+++|||||+.|+-+|..|++.|.+|+++|+.+.+.                                           
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il-------------------------------------------   57 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL-------------------------------------------   57 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc-------------------------------------------
Confidence            5789999999999999999999999999999986441                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +.             +.  .++.+++.+.+++.|++  ++++++|++++  + +...+...+  +....+.+|.||+|
T Consensus        58 --~~-------------~d--~~~~~~l~~~l~~~gV~--i~~~~~V~~i~--~-~~~~~~~~~--~~~~~i~~D~vi~A  113 (115)
T d1lvla2          58 --PT-------------YD--SELTAPVAESLKKLGIA--LHLGHSVEGYE--N-GCLLANDGK--GGQLRLEADRVLVA  113 (115)
T ss_dssp             --TT-------------SC--HHHHHHHHHHHHHHTCE--EETTCEEEEEE--T-TEEEEECSS--SCCCEECCSCEEEC
T ss_pred             --cc-------------cc--chhHHHHHHHHHhhcce--EEcCcEEEEEc--C-CeEEEEEcC--CCeEEEEcCEEEEe
Confidence              00             00  67888999999999999  99999999885  2 322222222  33357999999999


Q ss_pred             cC
Q 024975          162 NG  163 (259)
Q Consensus       162 tG  163 (259)
                      +|
T Consensus       114 ~G  115 (115)
T d1lvla2         114 VG  115 (115)
T ss_dssp             CC
T ss_pred             cC
Confidence            98

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.51  E-value=1.1e-13  Score=91.42  Aligned_cols=92  Identities=22%  Similarity=0.298  Sum_probs=75.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++++|||||+.|+-+|..|+++|.+|+++|+.+.+-                                           
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------------------   66 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM-------------------------------------------   66 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-------------------------------------------
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccccc-------------------------------------------
Confidence            3689999999999999999999999999999986431                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +            ..++  .++.+++.+.+.+.|++  ++++++|+++..   +  .+.+++|.    .+.+|.||+|
T Consensus        67 --~------------~~~~--~~~~~~~~~~l~~~GV~--i~~~~~v~~~~~---~--~v~l~dg~----~i~~D~vi~a  119 (121)
T d1d7ya2          67 --S------------RAAP--ATLADFVARYHAAQGVD--LRFERSVTGSVD---G--VVLLDDGT----RIAADMVVVG  119 (121)
T ss_dssp             --T------------TTSC--HHHHHHHHHHHHTTTCE--EEESCCEEEEET---T--EEEETTSC----EEECSEEEEC
T ss_pred             --c------------ccCC--HHHHHHHHHHHHHCCcE--EEeCCEEEEEeC---C--EEEECCCC----EEECCEEEEe
Confidence              0            0111  78888999999999999  999999987652   2  35666665    8999999999


Q ss_pred             cC
Q 024975          162 NG  163 (259)
Q Consensus       162 tG  163 (259)
                      +|
T Consensus       120 ~G  121 (121)
T d1d7ya2         120 IG  121 (121)
T ss_dssp             SC
T ss_pred             eC
Confidence            98

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.51  E-value=3.2e-13  Score=89.66  Aligned_cols=99  Identities=15%  Similarity=0.138  Sum_probs=78.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      .+++|||||+.|+-+|..|++.|.+++++++.+.+.                                            
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l--------------------------------------------   58 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK--------------------------------------------   58 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT--------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh--------------------------------------------
Confidence            689999999999999999999999999999976431                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                       +             .+.  .++.+++.+.+++.+++  ++++++++.++..+++.+........+..+.+.+|.||+|+
T Consensus        59 -~-------------~~d--~~~~~~~~~~l~~~gI~--v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~  120 (121)
T d1mo9a2          59 -L-------------IKD--NETRAYVLDRMKEQGME--IISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGL  120 (121)
T ss_dssp             -T-------------CCS--HHHHHHHHHHHHHTTCE--EESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECC
T ss_pred             -c-------------ccc--cchhhhhhhhhhccccE--EEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEE
Confidence             0             011  67888999999999999  99999999999876444433332223334679999999999


Q ss_pred             C
Q 024975          163 G  163 (259)
Q Consensus       163 G  163 (259)
                      |
T Consensus       121 G  121 (121)
T d1mo9a2         121 G  121 (121)
T ss_dssp             C
T ss_pred             C
Confidence            8

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.1e-13  Score=93.86  Aligned_cols=95  Identities=21%  Similarity=0.230  Sum_probs=80.1

Q ss_pred             CeEEEECCChHHHHHHHHHHH----cCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975            3 RHVAVIGAGAAGLVVGHELLR----EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~----~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (259)
                      .+++|||||+.|+-+|..|.+    .|.+|+++++++.+.                                        
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l----------------------------------------   77 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM----------------------------------------   77 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT----------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC----------------------------------------
Confidence            579999999999999999864    589999999976431                                        


Q ss_pred             eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                                       ...|+  .++.+++.+.+++.|++  +++++.|.++..++ +...+.+++|.    .+.+|.|
T Consensus        78 -----------------~~~~~--~~~~~~~~~~l~~~GV~--~~~~~~V~~i~~~~-~~~~v~l~~G~----~i~aD~V  131 (137)
T d1m6ia2          78 -----------------GKILP--EYLSNWTMEKVRREGVK--VMPNAIVQSVGVSS-GKLLIKLKDGR----KVETDHI  131 (137)
T ss_dssp             -----------------TTTSC--HHHHHHHHHHHHTTTCE--EECSCCEEEEEEET-TEEEEEETTSC----EEEESEE
T ss_pred             -----------------cccCC--HHHHHHHHHHHHhCCcE--EEeCCEEEEEEecC-CEEEEEECCCC----EEECCEE
Confidence                             01122  77888999999999999  99999999999876 77888888876    8999999


Q ss_pred             EEccC
Q 024975          159 VVCNG  163 (259)
Q Consensus       159 IlAtG  163 (259)
                      |+|+|
T Consensus       132 i~A~G  136 (137)
T d1m6ia2         132 VAAVG  136 (137)
T ss_dssp             EECCC
T ss_pred             EEeec
Confidence            99999

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.5e-13  Score=89.19  Aligned_cols=99  Identities=13%  Similarity=0.113  Sum_probs=80.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +++++|||||+.|+-+|..|.+.|.+|+++++++.+-                                           
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------------------   58 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-------------------------------------------   58 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------------------
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc-------------------------------------------
Confidence            4689999999999999999999999999999986430                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC-C----ceEEEEeC
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-D----VVEEETFD  156 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~----~~~~~~ad  156 (259)
                        +             .+.  .++.+++.+.+++.|++  ++.+++++++...+ +.+.+...... +    ......+|
T Consensus        59 --~-------------~~d--~~~~~~~~~~l~~~Gv~--i~~~~~v~~i~~~~-~g~~v~~~~~~~g~~~~~~~~~~~D  118 (125)
T d3grsa2          59 --R-------------SFD--SMISTNCTEELENAGVE--VLKFSQVKEVKKTL-SGLEVSMVTAVPGRLPVMTMIPDVD  118 (125)
T ss_dssp             --T-------------TSC--HHHHHHHHHHHHHTTCE--EETTEEEEEEEEET-TEEEEEEEECCTTSCCEEEEEEEES
T ss_pred             --c-------------chh--hHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcC-CeEEEEEEEccCCcCcCccccccCC
Confidence              0             011  77889999999999999  99999999999886 66666654322 1    23457899


Q ss_pred             EEEEccC
Q 024975          157 AVVVCNG  163 (259)
Q Consensus       157 ~VIlAtG  163 (259)
                      .|++|+|
T Consensus       119 ~vl~a~G  125 (125)
T d3grsa2         119 CLLWAIG  125 (125)
T ss_dssp             EEEECSC
T ss_pred             EEEEEeC
Confidence            9999998

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.50  E-value=3.3e-14  Score=109.31  Aligned_cols=160  Identities=18%  Similarity=0.164  Sum_probs=85.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-CCccc-cccccceec-ccccc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-YPVHS-SLYKSLRVN-LPREL   77 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~-~~~~~   77 (259)
                      |+.||+||||||+||++|..|.++|++|+|+|+.+..+..-.... .     ...+.. ..+.. ...+.+... .+...
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~-~-----~l~~~~~~~l~~lg~~~~l~~~~~~~~~   74 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRA-G-----VLEQGMVDLLREAGVDRRMARDGLVHEG   74 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCC-C-----EECHHHHHHHHHTTCCHHHHHHCEEESC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceE-E-----EECHHHHHHHHHcCchHHHHhhcccccc
Confidence            678999999999999999999999999999999864320000000 0     000000 00000 000000000 00000


Q ss_pred             ceecCCCCCccCC--C-CCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEE
Q 024975           78 MGFQAYPFVARNY--E-GSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET  154 (259)
Q Consensus        78 ~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~  154 (259)
                      ..+.+........  . ..........+..+...|.+.+.+.+..  +.+...++.....+++...|...++ ++...+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~-g~~~~i~  151 (292)
T d1k0ia1          75 VEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGAT--TVYQAAEVRLHDLQGERPYVTFERD-GERLRLD  151 (292)
T ss_dssp             EEEEETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCE--EESSCEEEEEECTTSSSCEEEEEET-TEEEEEE
T ss_pred             eEEEecccccccccccccccccceeecHHHHHHHHHHHHHhCCCc--EEEcceeeeeeeeccCceEEEEecC-CcEEEEE
Confidence            0000000000000  0 0011112234577888888888887776  6777666665555446677776653 3445789


Q ss_pred             eCEEEEccCCCCCCc
Q 024975          155 FDAVVVCNGHFSVPR  169 (259)
Q Consensus       155 ad~VIlAtG~~s~~~  169 (259)
                      ||+||.|+|..|..+
T Consensus       152 a~~vVgADG~~S~vR  166 (292)
T d1k0ia1         152 CDYIAGCDGFHGISR  166 (292)
T ss_dssp             CSEEEECCCTTCSTG
T ss_pred             eCEEEECCCCCCccc
Confidence            999999999877554

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.50  E-value=2e-14  Score=111.28  Aligned_cols=58  Identities=21%  Similarity=0.213  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      ..+...+.+.+.+.|++  ++.+++|+++...+++.+.|.+++|     .++||+||+|+|.|+.
T Consensus       148 ~~l~~~l~~~a~~~gv~--i~~~~~V~~i~~~~~~v~~V~T~~g-----~i~a~~VV~aaG~~s~  205 (305)
T d1pj5a2         148 ARAVQLLIKRTESAGVT--YRGSTTVTGIEQSGGRVTGVQTADG-----VIPADIVVSCAGFWGA  205 (305)
T ss_dssp             HHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEETTE-----EEECSEEEECCGGGHH
T ss_pred             hhhhhhHHhhhhccccc--ccCCceEEEEEEeCCEEEEEeccce-----eEECCEEEEecchhHH
Confidence            67888888888889999  9999999999998744455777653     6999999999998753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.49  E-value=1.7e-13  Score=107.67  Aligned_cols=41  Identities=41%  Similarity=0.603  Sum_probs=38.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~   42 (259)
                      +++|+|||||++||++|++|.++|++|+|||+++.+||.+.
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~   70 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVR   70 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeE
Confidence            47999999999999999999999999999999999998653

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.48  E-value=1.2e-13  Score=107.00  Aligned_cols=40  Identities=38%  Similarity=0.625  Sum_probs=37.5

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~   42 (259)
                      .||+|||||++||++|++|.++|++|+|||+++.+||.+.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   40 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVG   40 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEE
Confidence            4899999999999999999999999999999999998654

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.48  E-value=1.6e-13  Score=99.77  Aligned_cols=120  Identities=13%  Similarity=0.072  Sum_probs=73.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC-CcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      .|||+||||||+|+.||.++++.|.+++|++++. .+|..+.. +      ....+.+..+..        ..       
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cn-p------~~gg~~kg~l~r--------ei-------   59 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLP-P------KPPFPPGSLLER--------AY-------   59 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSC-C------CSCCCTTCHHHH--------HC-------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccC-C------ccccCCCcceee--------ee-------
Confidence            6999999999999999999999999999999873 23322211 0      000000000000        00       


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEE
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VI  159 (259)
                                     ...-+....+...+++.+... +++   .+..+|+++...++....|.+.+|.    .+.++.||
T Consensus        60 ---------------d~kG~av~a~raQ~k~~l~~~~nL~---i~q~~V~dli~e~~~v~gV~t~~G~----~~~AkaVI  117 (230)
T d2cula1          60 ---------------DPKDERVWAFHARAKYLLEGLRPLH---LFQATATGLLLEGNRVVGVRTWEGP----PARGEKVV  117 (230)
T ss_dssp             ---------------CTTCCCHHHHHHHHHHHHHTCTTEE---EEECCEEEEEEETTEEEEEEETTSC----CEECSEEE
T ss_pred             ---------------eccchhhhhHHHHHHHHHhhhcCHH---HHhccceeeEecccceeeEEecccc----EEEEeEEE
Confidence                           000111123333334444332 554   4567889988876455668887775    79999999


Q ss_pred             EccCCC
Q 024975          160 VCNGHF  165 (259)
Q Consensus       160 lAtG~~  165 (259)
                      +|||.+
T Consensus       118 LtTGTF  123 (230)
T d2cula1         118 LAVGSF  123 (230)
T ss_dssp             ECCTTC
T ss_pred             EccCcc
Confidence            999954

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.48  E-value=4.2e-13  Score=89.05  Aligned_cols=98  Identities=24%  Similarity=0.287  Sum_probs=80.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +.+++|||||+.|+-+|..|.+.|.+|+|+|+++.+.                                           
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l-------------------------------------------   61 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV-------------------------------------------   61 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------------------------------
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC-------------------------------------------
Confidence            5689999999999999999999999999999986441                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VIl  160 (259)
                        +.             +.  .++..++.+.+++.|++  ++.++++.+++..+ +...+.+...+ ++.+.+.+|.|++
T Consensus        62 --~~-------------~d--~~~~~~l~~~l~~~GI~--i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vLv  121 (123)
T d1dxla2          62 --PT-------------MD--AEIRKQFQRSLEKQGMK--FKLKTKVVGVDTSG-DGVKLTVEPSAGGEQTIIEADVVLV  121 (123)
T ss_dssp             --TT-------------SC--HHHHHHHHHHHHHSSCC--EECSEEEEEEECSS-SSEEEEEEESSSCCCEEEEESEEEC
T ss_pred             --ch-------------hh--hcchhhhhhhhhcccce--EEcCCceEEEEEcc-CeEEEEEEECCCCeEEEEEcCEEEE
Confidence              10             00  78888999999999999  99999999999876 66777765433 4456799999998


Q ss_pred             cc
Q 024975          161 CN  162 (259)
Q Consensus       161 At  162 (259)
                      |.
T Consensus       122 AA  123 (123)
T d1dxla2         122 SA  123 (123)
T ss_dssp             CC
T ss_pred             cC
Confidence            83

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.47  E-value=1.1e-12  Score=102.79  Aligned_cols=62  Identities=11%  Similarity=0.162  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEe-cCCceEEEEeCEEEEccCCCC
Q 024975          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      ..+...+.+.+.+.+++  ++.+++++++..+++....+...+ .+++...+.++.||+|||.++
T Consensus       158 ~~i~~~l~~~~~~~gv~--i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~  220 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVS--IQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG  220 (336)
T ss_dssp             HHHHHHHHHHHHHHTCE--EECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhcccc--ccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEeccccc
Confidence            46777778888888999  999999999998875455555554 346777899999999999754

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1.5e-12  Score=86.04  Aligned_cols=99  Identities=17%  Similarity=0.252  Sum_probs=79.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      +.+++|||||+.|+-+|..|++.|.+|+|+++++.+                                            
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l--------------------------------------------   55 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL--------------------------------------------   55 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS--------------------------------------------
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhh--------------------------------------------
Confidence            468999999999999999999999999999875311                                            


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCC---CcEEEEEEecC-CceEEEEeCE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES---NKWKVKSRKKD-DVVEEETFDA  157 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~---~~~~v~~~~g~-~~~~~~~ad~  157 (259)
                        +             .+.  .++.+++...+++.|++  ++++++|++++..++   ....+....++ ++.....+|.
T Consensus        56 --~-------------~~D--~~~~~~l~~~l~~~Gv~--i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~  116 (122)
T d1h6va2          56 --R-------------GFD--QDMANKIGEHMEEHGIK--FIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNT  116 (122)
T ss_dssp             --T-------------TSC--HHHHHHHHHHHHHTTEE--EEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESE
T ss_pred             --c-------------cCC--HHHHHHHHHHHHHCCCE--EEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCE
Confidence              0             011  78899999999999999  999999999987543   34566666654 3445678999


Q ss_pred             EEEccC
Q 024975          158 VVVCNG  163 (259)
Q Consensus       158 VIlAtG  163 (259)
                      |++|+|
T Consensus       117 vl~AiG  122 (122)
T d1h6va2         117 VLLAVG  122 (122)
T ss_dssp             EECCCC
T ss_pred             EEEEeC
Confidence            999998

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.47  E-value=7.2e-13  Score=87.14  Aligned_cols=95  Identities=15%  Similarity=0.153  Sum_probs=78.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~---g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (259)
                      +.+++|||||+.|+-+|..|.+.   +.+|+++|+.+.+-                                        
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL----------------------------------------   59 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL----------------------------------------   59 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS----------------------------------------
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh----------------------------------------
Confidence            47899999999999999887765   45799999976430                                        


Q ss_pred             eecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEE
Q 024975           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~V  158 (259)
                           +             .|.  .++.+++.+.+++.|++  +++++++++++..+++...+.+++|.    .+.+|.|
T Consensus        60 -----~-------------~~d--~~~~~~l~~~l~~~GV~--v~~~~~v~~ie~~~~~~~~v~~~~G~----~i~~D~V  113 (117)
T d1aoga2          60 -----R-------------GFD--HTLREELTKQLTANGIQ--ILTKENPAKVELNADGSKSVTFESGK----KMDFDLV  113 (117)
T ss_dssp             -----T-------------TSC--HHHHHHHHHHHHHTTCE--EEESCCEEEEEECTTSCEEEEETTSC----EEEESEE
T ss_pred             -----c-------------ccc--hHHHHHHHHHHHhcCcE--EEcCCEEEEEEEcCCCeEEEEECCCc----EEEeCEE
Confidence                 0             011  78889999999999999  99999999999876567888888876    7999999


Q ss_pred             EEcc
Q 024975          159 VVCN  162 (259)
Q Consensus       159 IlAt  162 (259)
                      |+|.
T Consensus       114 i~AI  117 (117)
T d1aoga2         114 MMAI  117 (117)
T ss_dssp             EECS
T ss_pred             EEeC
Confidence            9983

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.45  E-value=5.8e-14  Score=107.38  Aligned_cols=160  Identities=17%  Similarity=0.088  Sum_probs=83.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCCcCcee---eeCCCCC--CCCCCCCCCCCCccccccccceecccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSW---IYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPR   75 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~~gg~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (259)
                      +.||+||||||+||++|..|+++|+ +|+|+|+.+.++...   ...++..  ...++.... .................
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~   79 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA-LAATAIPTHELRYIDQS   79 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHH-HHHHSEEECEEEEECTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhh-hHhhhcccccceeEcCC
Confidence            4699999999999999999999996 899999987764221   1100000  000000000 00000000000000000


Q ss_pred             ccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHH--HhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEE
Q 024975           76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR--EFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE  153 (259)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~  153 (259)
                       .......+....  ..................+.....  ..+..  +.+.++++.+...+ +.+.+.+.++++...++
T Consensus        80 -g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~-~~v~v~~~~g~~~~~~~  153 (288)
T d3c96a1          80 -GATVWSEPRGVE--AGNAYPQYSIHRGELQMILLAAVRERLGQQA--VRTGLGVERIEERD-GRVLIGARDGHGKPQAL  153 (288)
T ss_dssp             -SCEEEEEECGGG--GTCSSCEEEEEHHHHHHHHHHHHHHHHCTTS--EEESEEEEEEEEET-TEEEEEEEETTSCEEEE
T ss_pred             -CCEEEecccccc--ccccCcccccchhhhHHHHHHHHHHhccCee--eecCcEEEEeeecC-CcEEEEEEcCCCCeEEE
Confidence             000000000000  000000001111222222222222  23666  89999999999876 77889999988777889


Q ss_pred             EeCEEEEccCCCCCC
Q 024975          154 TFDAVVVCNGHFSVP  168 (259)
Q Consensus       154 ~ad~VIlAtG~~s~~  168 (259)
                      .+|+||.|.|.+|..
T Consensus       154 ~ad~vi~ADG~~S~v  168 (288)
T d3c96a1         154 GADVLVGADGIHSAV  168 (288)
T ss_dssp             EESEEEECCCTTCHH
T ss_pred             eeceeeccCCcccee
Confidence            999999999987654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.6e-13  Score=107.26  Aligned_cols=40  Identities=35%  Similarity=0.554  Sum_probs=37.7

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      ||+|||||++||++|+.|+++|++|+|+|+++.+||.+..
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t   40 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYT   40 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCE
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeE
Confidence            8999999999999999999999999999999999997653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.44  E-value=7.6e-13  Score=87.76  Aligned_cols=93  Identities=20%  Similarity=0.173  Sum_probs=74.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+|||||+.|+-+|..|+++|.+|+++|+.+.+-                                           
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l-------------------------------------------   66 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPL-------------------------------------------   66 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-------------------------------------------
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCccc-------------------------------------------
Confidence            3589999999999999999999999999999976431                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                        +            ..+.  .++..++.+.+.+.|++  +++++++++++.+. ....+ ..++.    .+.+|.||+|
T Consensus        67 --~------------~~~d--~~~~~~~~~~l~~~gv~--~~~~~~v~~i~~~~-~~~~v-~~dg~----~i~~D~vi~a  122 (123)
T d1nhpa2          67 --G------------VYLD--KEFTDVLTEEMEANNIT--IATGETVERYEGDG-RVQKV-VTDKN----AYDADLVVVA  122 (123)
T ss_dssp             --T------------TTCC--HHHHHHHHHHHHTTTEE--EEESCCEEEEECSS-BCCEE-EESSC----EEECSEEEEC
T ss_pred             --c------------cccc--hhhHHHHHHHhhcCCeE--EEeCceEEEEEcCC-CEEEE-EeCCC----EEECCEEEEE
Confidence              0            0011  77888999999899999  99999999998643 33344 45554    7999999998

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=1.3e-13  Score=98.57  Aligned_cols=111  Identities=16%  Similarity=0.224  Sum_probs=73.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .|||+||||||+|++||.++.+.|.+++|+|+.  +||.+.....                              ...+.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~~~~~------------------------------~~~~~   48 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTVD------------------------------IENYI   48 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGGCCE------------------------------ECCBT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCccccccc------------------------------ceecc
Confidence            489999999999999999999999999999975  5665543200                              00000


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCc--EEEEEEecCCceEEEEeCEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK--WKVKSRKKDDVVEEETFDAVV  159 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~--~~v~~~~g~~~~~~~~ad~VI  159 (259)
                      ..+.              .....+...+...+++++.+  ......+..+.......  +.......    ..+.++.++
T Consensus        49 ~~~~--------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  108 (184)
T d1fl2a1          49 SVPK--------------TEGQKLAGALKVHVDEYDVD--VIDSQSASKLIPAAVEGGLHQIETASG----AVLKARSII  108 (184)
T ss_dssp             TBSS--------------EEHHHHHHHHHHHHHTSCEE--EECSCCEEEEECCSSTTCCEEEEETTS----CEEEEEEEE
T ss_pred             ccch--------------hhhHHHHHHHHHHhhheece--eeccceeeeecccccccceeeeeeecc----eeeeccccc
Confidence            0111              11256667777777777777  67777777776544222  33333332    378999999


Q ss_pred             EccCC
Q 024975          160 VCNGH  164 (259)
Q Consensus       160 lAtG~  164 (259)
                      +++|.
T Consensus       109 ~~~g~  113 (184)
T d1fl2a1         109 VATGA  113 (184)
T ss_dssp             ECCCE
T ss_pred             ccccc
Confidence            99995

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=2.9e-13  Score=104.80  Aligned_cols=163  Identities=12%  Similarity=0.126  Sum_probs=84.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCC------------CCCccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN------------RYPVHSSLYK   67 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~   67 (259)
                      .+||+|||+|++||++|..+.++  |.+|+|+||....+|.................+            ..........
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s~~A~GGi~a~~~~~Ds~e~~~~dt~~~g~~~~d~~~v~   84 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVD   84 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcHHHHhhhHhhhcCCCCCHHHHHHHHHhhccCccHHHHHH
Confidence            37999999999999999999987  679999999876654432221111000000000            0000011111


Q ss_pred             cceeccccccceecCC--CCCccCCC----CCCCCC-----CCC----CHHHHHHHHHHHHHHhCCceeEEeceeEEEEE
Q 024975           68 SLRVNLPRELMGFQAY--PFVARNYE----GSVDLR-----RYP----GHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR  132 (259)
Q Consensus        68 ~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~-----~~~----~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~  132 (259)
                      .+....+.....+.++  ++......    ......     .+.    .+..+...+.+..+..+++  ++.++.++++.
T Consensus        85 ~~~~~~~~~i~~L~~~g~~f~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~l~~~~~~~~v~--i~~~~~v~~Ll  162 (311)
T d1kf6a2          85 YFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQ--RFDEHFVLDIL  162 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEE--EEETEEEEEEE
T ss_pred             HHHHhhhHhHHhhhhcccccccccccccccccccccccccccccccchhhHHHHhHHHHHHccCcce--eEeeeEeeeeE
Confidence            1111111111111111  11111000    000000     011    1123333444444445788  99999999998


Q ss_pred             EeCCCcEEEEEEe-cCCceEEEEeCEEEEccCCCC
Q 024975          133 LVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFS  166 (259)
Q Consensus       133 ~~~~~~~~v~~~~-g~~~~~~~~ad~VIlAtG~~s  166 (259)
                      .+++....+...+ .+++...+.++.||+|||.++
T Consensus       163 ~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g  197 (311)
T d1kf6a2         163 VDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG  197 (311)
T ss_dssp             EETTEEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred             ecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCcc
Confidence            8774444454444 446677889999999999754

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.40  E-value=4.4e-15  Score=109.64  Aligned_cols=43  Identities=26%  Similarity=0.431  Sum_probs=40.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~   44 (259)
                      .|||+||||||+|+++|..+++.|.+|+|+|+.+.+||.|...
T Consensus         3 ~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~   45 (221)
T d1dxla1           3 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNV   45 (221)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecc
Confidence            5999999999999999999999999999999999999988653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=1.5e-12  Score=93.54  Aligned_cols=110  Identities=18%  Similarity=0.313  Sum_probs=78.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .+||+||||||+||.||..|++.|.+++|+|+.+. ++.+......                              .   
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~-~g~~~~~~~i------------------------------~---   50 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK-GGQLTTTTEV------------------------------E---   50 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSST-TGGGGGCSBC------------------------------C---
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecc-cccccccchh------------------------------h---
Confidence            47999999999999999999999999999998653 4433321000                              0   


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEc
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlA  161 (259)
                      .++          .........++...+...+.+.+++  +.. .+|+.+...+ +.|.+....     ..+.++.+++|
T Consensus        51 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~V~~~~~~~-~~~~v~~~~-----~~~~~~~viva  111 (190)
T d1trba1          51 NWP----------GDPNDLTGPLLMERMHEHATKFETE--IIF-DHINKVDLQN-RPFRLNGDN-----GEYTCDALIIA  111 (190)
T ss_dssp             CST----------TCCSSCBHHHHHHHHHHHHHHTTCE--EEC-CCEEEEECSS-SSEEEEESS-----CEEEEEEEEEC
T ss_pred             hhh----------ccccccchHHHHHHHHHHHHhcCcE--Eec-ceeEEEecCC-CcEEEEEee-----eeEeeeeeeee
Confidence            000          0011122377888888888888887  554 4788888765 677777655     37899999999


Q ss_pred             cCC
Q 024975          162 NGH  164 (259)
Q Consensus       162 tG~  164 (259)
                      +|.
T Consensus       112 ~G~  114 (190)
T d1trba1         112 TGA  114 (190)
T ss_dssp             CCE
T ss_pred             cce
Confidence            995

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.39  E-value=1.1e-12  Score=99.96  Aligned_cols=140  Identities=16%  Similarity=0.059  Sum_probs=80.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHH-cCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~-~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      .+||+||||||+||++|++|++ .|++|+|+|+++.+||.|...        ++......+.......+..    .    
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~--------g~~~~~~~~~~~~~~~~~~----~----   96 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLG--------GQLFSAMIVRKPAHLFLDE----I----   96 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCC--------STTCCCEEEETTTHHHHHH----H----
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeec--------CEEcCHHHHhhhHHHHHHH----c----
Confidence            4799999999999999999987 599999999999999887642        1111110000000000000    0    


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEE----------ecCCce
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR----------KKDDVV  150 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~----------~g~~~~  150 (259)
                       ..++...    ............+..++...+...+..  +...+.+..+...+++...+...          ......
T Consensus        97 -g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~  169 (278)
T d1rp0a1          97 -GVAYDEQ----DTYVVVKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDP  169 (278)
T ss_dssp             -TCCCEEC----SSEEEESCHHHHHHHHHHHHHTSTTEE--EEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCC
T ss_pred             -CCceecC----CccceecccHHHHHHHHHHHHHhCCCE--EEeCCcceeeeecCCeEEEEEeccceeeeeecccccccc
Confidence             0011000    001111223355666666666666666  78888888887765322222221          001223


Q ss_pred             EEEEeCEEEEccCC
Q 024975          151 EEETFDAVVVCNGH  164 (259)
Q Consensus       151 ~~~~ad~VIlAtG~  164 (259)
                      ..+.++.||+|+|.
T Consensus       170 ~~~~a~~vv~a~G~  183 (278)
T d1rp0a1         170 NVMEAKIVVSSCGH  183 (278)
T ss_dssp             EEEEEEEEEECCCS
T ss_pred             eeeccceEEECcCC
Confidence            56899999999996

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.39  E-value=1.8e-15  Score=109.71  Aligned_cols=42  Identities=33%  Similarity=0.485  Sum_probs=38.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~~gg~~~~   43 (259)
                      .++|+||||||+||++|..|+++|+ +|+|||+.+.+||.+..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~   46 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTS   46 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHH
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhh
Confidence            4789999999999999999999998 59999999998887765

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.36  E-value=3.1e-12  Score=84.69  Aligned_cols=88  Identities=23%  Similarity=0.273  Sum_probs=71.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (259)
                      ++++|||||+.|+-+|..|.+.|.+|+++|+++.+.                                            
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~--------------------------------------------   68 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL--------------------------------------------   68 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT--------------------------------------------
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccccc--------------------------------------------
Confidence            579999999999999999999999999999976431                                            


Q ss_pred             CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEcc
Q 024975           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAt  162 (259)
                       +              +.  .++.+++.+.+.+.|++  ++.+++++++..   + . + +.++    ..+.+|.||+|+
T Consensus        69 -~--------------~d--~~~~~~~~~~l~~~GV~--~~~~~~v~~~~~---~-~-v-~~~~----~~i~~D~vi~a~  119 (122)
T d1xhca2          69 -G--------------LD--EELSNMIKDMLEETGVK--FFLNSELLEANE---E-G-V-LTNS----GFIEGKVKICAI  119 (122)
T ss_dssp             -T--------------CC--HHHHHHHHHHHHHTTEE--EECSCCEEEECS---S-E-E-EETT----EEEECSCEEEEC
T ss_pred             -C--------------CC--HHHHHHHHHHHHHCCcE--EEeCCEEEEEeC---C-E-E-EeCC----CEEECCEEEEEE
Confidence             0              11  77888888989899999  999999988752   2 2 2 2232    379999999999


Q ss_pred             C
Q 024975          163 G  163 (259)
Q Consensus       163 G  163 (259)
                      |
T Consensus       120 G  120 (122)
T d1xhca2         120 G  120 (122)
T ss_dssp             C
T ss_pred             E
Confidence            9

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.35  E-value=1.4e-12  Score=93.77  Aligned_cols=112  Identities=16%  Similarity=0.174  Sum_probs=77.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC----ceeeeCCCCCCCCCCCCCCCCCccccccccceecccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG----GSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL   77 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (259)
                      .+||+||||||+|++||.+|++.|.+++|+|+.....    +.....                       ....+     
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~-----------------------~~~~~-----   56 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTT-----------------------TDVEN-----   56 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGC-----------------------SEECC-----
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccc-----------------------hhhhc-----
Confidence            4799999999999999999999999999999864321    110000                       00000     


Q ss_pred             ceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCE
Q 024975           78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (259)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~  157 (259)
                        +.             .........++...+.+.+.+++.+  +... +|.+++... +.+.+.+..     ....+|.
T Consensus        57 --~~-------------~~~~~~~~~el~~~~~~q~~~~g~~--i~~~-~V~~~~~~~-~~~~v~~~~-----~~~~~~~  112 (192)
T d1vdca1          57 --FP-------------GFPEGILGVELTDKFRKQSERFGTT--IFTE-TVTKVDFSS-KPFKLFTDS-----KAILADA  112 (192)
T ss_dssp             --ST-------------TCTTCEEHHHHHHHHHHHHHHTTCE--EECC-CCCEEECSS-SSEEEECSS-----EEEEEEE
T ss_pred             --cc-------------cccccccchHHHHHHHHHHHhhcce--eeee-eEEeccccc-CcEEecccc-----eeeeeee
Confidence              00             0111123478888888888889988  6654 788888765 667776654     4789999


Q ss_pred             EEEccCCC
Q 024975          158 VVVCNGHF  165 (259)
Q Consensus       158 VIlAtG~~  165 (259)
                      +++++|..
T Consensus       113 ~~~a~g~~  120 (192)
T d1vdca1         113 VILAIGAV  120 (192)
T ss_dssp             EEECCCEE
T ss_pred             EEEEeeee
Confidence            99999953

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.34  E-value=1.8e-13  Score=103.40  Aligned_cols=43  Identities=26%  Similarity=0.245  Sum_probs=40.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~   44 (259)
                      .||++||||||+|+.+|..|++.|.+++++|+.+.+||+|...
T Consensus        42 ~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~   84 (261)
T d1mo9a1          42 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHN   84 (261)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccc
Confidence            5899999999999999999999999999999999999988653

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.33  E-value=1.6e-13  Score=101.09  Aligned_cols=43  Identities=23%  Similarity=0.387  Sum_probs=38.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~   44 (259)
                      +.||++||||||+|+.+|..+++.|.+|+|+|++ .+||+|...
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~~~   46 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLNI   46 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCccccc
Confidence            3589999999999999999999999999999996 589988654

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.32  E-value=1.9e-13  Score=101.32  Aligned_cols=42  Identities=29%  Similarity=0.432  Sum_probs=37.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~   43 (259)
                      +++|+||||||+||+||.+|+++  +.+|+|||+.+.+||.+.+
T Consensus         1 ~~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~   44 (230)
T d1cjca2           1 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF   44 (230)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred             CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh
Confidence            36999999999999999999886  6799999999999987765

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.31  E-value=4.5e-13  Score=99.43  Aligned_cols=145  Identities=19%  Similarity=0.254  Sum_probs=78.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC---CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCcccc-ccccceecccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG---HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPREL   77 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g---~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   77 (259)
                      |.+|+|||+||+|++||.++++.+   .+|+++|+ ..+||+|...        +|.|.+.++... .+..+. ......
T Consensus         1 ~~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cln~--------GciPsK~ll~~a~~~~~~~-~~~~~G   70 (233)
T d1xdia1           1 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAVLD--------DCVPSKTFIASTGLRTELR-RAPHLG   70 (233)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHHHT--------SHHHHHHHHHHHHHHHHHT-TTTTTT
T ss_pred             CcEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceeecc--------cccccEEEEeecchhhhhh-hhhhcC
Confidence            468999999999999999988865   57999999 5589988764        444443332221 111111 111100


Q ss_pred             ceecCCCCCccCCCCCCCCCCCCC----HH----HHHHHHHHHHHHhCCceeEEeceeEEEEEEeC-CCcEEEEEEecCC
Q 024975           78 MGFQAYPFVARNYEGSVDLRRYPG----HE----EVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKWKVKSRKKDD  148 (259)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~-~~~~~v~~~~g~~  148 (259)
                      ..+   .+.       .....++.    ..    .+...+...+...+++  +..+.. ..+.... .....+.....++
T Consensus        71 ~~i---~~~-------~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~gV~--vi~G~~-~~~~~~~~~~~~~v~v~~~dg  137 (233)
T d1xdia1          71 FHI---DFD-------DAKISLPQIHARVKTLAAAQSADITAQLLSMGVQ--VIAGRG-ELIDSTPGLARHRIKATAADG  137 (233)
T ss_dssp             BC----------------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESEE-EECCSSSCCSSEEEEEECTTS
T ss_pred             Ccc---ccc-------Cceeeeeeeccccceeeeeeecceehhhccccee--EEECcc-cccccccccccceEEEEecCC
Confidence            000   000       00001110    01    1222344555566887  655422 2221111 1234566655556


Q ss_pred             ceEEEEeCEEEEccCCCCCCccC
Q 024975          149 VVEEETFDAVVVCNGHFSVPRLA  171 (259)
Q Consensus       149 ~~~~~~ad~VIlAtG~~s~~~~~  171 (259)
                      ....+++|.||+|||  +.|..+
T Consensus       138 ~~~~i~ad~viiAtG--~~p~~~  158 (233)
T d1xdia1         138 STSEHEADVVLVATG--ASPRIL  158 (233)
T ss_dssp             CEEEEEESEEEECCC--EEECCC
T ss_pred             ceeeeecceeeeecC--cccccc
Confidence            667899999999999  566543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=3.9e-13  Score=99.95  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=32.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .|||+||||||+|++||.++++.|.+|+|+|+.+.
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~   37 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTP   37 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            48999999999999999999999999999998654

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.30  E-value=7.7e-13  Score=85.46  Aligned_cols=62  Identities=29%  Similarity=0.485  Sum_probs=56.1

Q ss_pred             cCCCCCCCCC----CCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC
Q 024975          170 LAQVPGIDSW----PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (259)
Q Consensus       170 ~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~  231 (259)
                      +|++||++.|    +|.++|+..|+.+..+.+++|+|||+|.||+|+|.+|++.++++++++|++.
T Consensus         1 iP~ipGl~~f~~~~~G~i~Hs~~y~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2           1 IPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             BCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CcCCCChHHHhccCCccEEECCcCcchhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            4788887655    5999999999999999999999999999999999999999999988888883

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=8e-13  Score=87.80  Aligned_cols=89  Identities=22%  Similarity=0.243  Sum_probs=75.3

Q ss_pred             ccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC----CcccccCCCCCCCc
Q 024975          169 RLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV----ADETHEKQPGYDNM  244 (259)
Q Consensus       169 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~----~~~~~~~~~~~~~~  244 (259)
                      +.+.+||.+.|.+...+.+..++...+.+++|+|+|+|.+|+|.|..|.+.+.+|++++|++    ++.+.+++...++|
T Consensus         2 R~L~ipge~~~~gkGV~yca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~~~~I   81 (126)
T d1fl2a2           2 RNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNV   81 (126)
T ss_dssp             CCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHTCTTE
T ss_pred             CcCCCCCHHHhcCCCEEEEEecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecccccccccccccccccccce
Confidence            45689999999999888887777778899999999999999999999999999999999998    45566777666666


Q ss_pred             eE--eeeeeEEeecc
Q 024975          245 WL--HSMVRTKKCSR  257 (259)
Q Consensus       245 ~~--~~~v~~~~~~~  257 (259)
                      .+  +++|+.+.+..
T Consensus        82 ~v~~~~~v~~i~G~~   96 (126)
T d1fl2a2          82 DIILNAQTTEVKGDG   96 (126)
T ss_dssp             EEESSEEEEEEEESS
T ss_pred             eEEcCcceEEEEccc
Confidence            65  58888888753

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=1.2e-11  Score=96.54  Aligned_cols=164  Identities=15%  Similarity=0.062  Sum_probs=87.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCC--CCC------------CCccccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVD--PNR------------YPVHSSLYK   67 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~--~~~------------~~~~~~~~~   67 (259)
                      .+||+|||+|++||++|..+.++|.+|+|+||.+..++................  ...            .........
T Consensus         7 ~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s~~A~GGi~a~~~~~~~Ds~e~~~~Dtl~aG~~l~d~~~v~   86 (330)
T d1neka2           7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE   86 (330)
T ss_dssp             EESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHHTSCSCHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcHHHHhhhHheEcCCCCCCCHHHHHHHHHHhhhhccCHHHHH
Confidence            379999999999999999999999999999998766544322111100000000  000            000000011


Q ss_pred             cceeccccccceec--CCCCCccCCC------CCCCC-----C--------CCCCHHHHHHHHHHHHHHhCCceeEEece
Q 024975           68 SLRVNLPRELMGFQ--AYPFVARNYE------GSVDL-----R--------RYPGHEEVLRYLQNFAREFGVDQVVRLHT  126 (259)
Q Consensus        68 ~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~-----~--------~~~~~~~~~~~l~~~~~~~~~~~~v~~~~  126 (259)
                      .+....+.....+.  ..++......      .....     .        .-.....+...|.+.+.+.++.  ++.++
T Consensus        87 ~l~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~d~~G~~i~~~L~~~~~~~~v~--~~~~~  164 (330)
T d1neka2          87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTT--IFSEW  164 (330)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCBCSCBTTBCCCSSBCEEECTTSSSEEEECCTTCHHHHHHHHHHHHHHHTTCE--EECSE
T ss_pred             HHHHHhHHHHHHHhhccccccccCCCceehhccCcccccccCcccccccccCCccHHHHHHHHHHHHHhcCCe--EEEEE
Confidence            11111111100010  1111111000      00000     0        0011256777788888888888  88888


Q ss_pred             eEEEEEEeCCCcE-E-EEEEecCCceEEEEeCEEEEccCCCCC
Q 024975          127 EVLNARLVESNKW-K-VKSRKKDDVVEEETFDAVVVCNGHFSV  167 (259)
Q Consensus       127 ~v~~i~~~~~~~~-~-v~~~~g~~~~~~~~ad~VIlAtG~~s~  167 (259)
                      .++.+...+++.. . +.....+++...+.++.||+|||.+..
T Consensus       165 ~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~  207 (330)
T d1neka2         165 YALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR  207 (330)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCGG
T ss_pred             EEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCccc
Confidence            8888877543332 2 223334477788999999999997543

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=1.1e-11  Score=95.52  Aligned_cols=41  Identities=39%  Similarity=0.555  Sum_probs=33.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      .+||+|||+|++||++|+.+++.+ +|+|+||.+..||....
T Consensus         7 ~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s~~   47 (305)
T d1chua2           7 SCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTFY   47 (305)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC-----
T ss_pred             cCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCchHH
Confidence            489999999999999999998888 99999999877766443

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=4.3e-12  Score=97.49  Aligned_cols=42  Identities=29%  Similarity=0.470  Sum_probs=39.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      |+||+|||||++||++|++|++.|.+|+|+|+.+.+||.+..
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t   42 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT   42 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEE
Confidence            699999999999999999999999999999999999998744

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.3e-12  Score=94.77  Aligned_cols=41  Identities=27%  Similarity=0.421  Sum_probs=37.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      +||++||||||+|+++|.++++.|.+|+|+|+. .+||.|..
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~-~~GG~c~n   43 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVN   43 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CCCCcccc
Confidence            599999999999999999999999999999995 57877754

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=6.4e-12  Score=94.60  Aligned_cols=41  Identities=24%  Similarity=0.362  Sum_probs=38.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~   42 (259)
                      .|||+|||||++|++||+.|+++|.+|+|+|+++.+||.+.
T Consensus         5 ~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~   45 (297)
T d2bcgg1           5 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAA   45 (297)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceE
Confidence            48999999999999999999999999999999999998764

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.16  E-value=1.6e-10  Score=90.84  Aligned_cols=39  Identities=23%  Similarity=0.251  Sum_probs=33.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHH----cCCcEEEEeeCCCcCce
Q 024975            2 FRHVAVIGAGAAGLVVGHELLR----EGHTVVVYEKGEQVGGS   40 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~----~g~~v~v~e~~~~~gg~   40 (259)
                      .+||+|||+|++||++|+.|++    +|.+|+|+||.+..|+.
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~   63 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSG   63 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCS
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCCh
Confidence            4799999999999999999976    58999999998766543

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.15  E-value=4.7e-11  Score=86.06  Aligned_cols=110  Identities=20%  Similarity=0.237  Sum_probs=69.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceecccccccee
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (259)
                      ++|+|||||++|+.+|..|++.  +.+|+++|+.+.+.  +..                   . ....+..         
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~--~~~-------------------~-~~~~~l~---------   49 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS--FLS-------------------A-GMQLYLE---------   49 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS--BCG-------------------G-GHHHHHT---------
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc--ccc-------------------c-Ccchhhc---------
Confidence            4799999999999999999997  45899999976441  000                   0 0000000         


Q ss_pred             cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEe-cCCceEEEEeCEEE
Q 024975           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVV  159 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~ad~VI  159 (259)
                        ..              ....+++..+..+.+.+.+++  ++.+++|++++..+ +.  |.+.+ .+++...+.+|.+|
T Consensus        50 --~~--------------~~~~~~~~~~~~~~l~~~gi~--v~~~~~V~~i~~~~-~~--v~~~~~~~g~~~~~~~D~li  108 (198)
T d1nhpa1          50 --GK--------------VKDVNSVRYMTGEKMESRGVN--VFSNTEITAIQPKE-HQ--VTVKDLVSGEERVENYDKLI  108 (198)
T ss_dssp             --TS--------------SCCGGGSBSCCHHHHHHTTCE--EEETEEEEEEETTT-TE--EEEEETTTCCEEEEECSEEE
T ss_pred             --cc--------------ccchHHHHHhhHHHHHHCCcE--EEEeeceeeEeecc-cc--ceeeecccccccccccceee
Confidence              00              000012222224455667998  99999999998654 43  44433 23556678999999


Q ss_pred             EccCC
Q 024975          160 VCNGH  164 (259)
Q Consensus       160 lAtG~  164 (259)
                      +|+|.
T Consensus       109 ~a~G~  113 (198)
T d1nhpa1         109 ISPGA  113 (198)
T ss_dssp             ECCCE
T ss_pred             Eeecc
Confidence            99994

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.15  E-value=5.2e-12  Score=92.87  Aligned_cols=43  Identities=30%  Similarity=0.525  Sum_probs=38.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~   44 (259)
                      +.||++||||||+|+++|.++++.|.+|+|+|+.. +||+|...
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~-~GG~~~~~   44 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVCLNV   44 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC-CCcceecc
Confidence            35899999999999999999999999999999954 78887653

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.11  E-value=2e-11  Score=81.11  Aligned_cols=81  Identities=12%  Similarity=0.101  Sum_probs=67.1

Q ss_pred             CCCCCceEEcccCCCC--CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC----CcccccCCCCCCCceE--ee
Q 024975          177 DSWPGKQMHSHNYRIP--NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV----ADETHEKQPGYDNMWL--HS  248 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~--~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~----~~~~~~~~~~~~~~~~--~~  248 (259)
                      ..|.++..+.+..++.  ..+.+++|+|+|+|.+|+|.|..|++.+.+||+++|++    ++.+.+++++.++|.+  ++
T Consensus        12 ~~f~gkGVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~~~~~~~l~~~~nI~v~~~~   91 (130)
T d1vdca2          12 GGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNS   91 (130)
T ss_dssp             SCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSE
T ss_pred             ccccCCcEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccchhhhhccccCCceEEEecc
Confidence            3377888888877664  36789999999999999999999999999999999998    4557788877777765  58


Q ss_pred             eeeEEeecc
Q 024975          249 MVRTKKCSR  257 (259)
Q Consensus       249 ~v~~~~~~~  257 (259)
                      .+.++.++.
T Consensus        92 ~v~~i~Gd~  100 (130)
T d1vdca2          92 SVVEAYGDG  100 (130)
T ss_dssp             EEEEEEESS
T ss_pred             EEEEEEccC
Confidence            888888753

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1e-11  Score=90.59  Aligned_cols=50  Identities=18%  Similarity=0.274  Sum_probs=37.9

Q ss_pred             HHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccCCCCCCccCCCC
Q 024975          114 REFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVP  174 (259)
Q Consensus       114 ~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG~~s~~~~~~~~  174 (259)
                      ++.+++  ++.+++|++++..+ +  +|.+++|+    .+.||.||+|||  +.+..+.++
T Consensus        94 ~~~gI~--~~~g~~V~~id~~~-~--~V~l~dG~----~i~~d~lViAtG--~~~~~~~l~  143 (213)
T d1m6ia1          94 ENGGVA--VLTGKKVVQLDVRD-N--MVKLNDGS----QITYEKCLIATG--GTEPNVELA  143 (213)
T ss_dssp             TTCEEE--EEETCCEEEEEGGG-T--EEEETTSC----EEEEEEEEECCC--EEEECCTTH
T ss_pred             HHCCeE--EEeCCEEEEeeccC-c--eeeeccce----eeccceEEEeee--eecchhhhh
Confidence            356788  99999999997654 3  67777776    899999999999  555544433

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.09  E-value=2.8e-11  Score=92.08  Aligned_cols=40  Identities=28%  Similarity=0.560  Sum_probs=36.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCCcCceee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWI   42 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~~gg~~~   42 (259)
                      +||+|||||++||+||+.|.++|+ +|+|||+++.+||.+.
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~   41 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMH   41 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEE
Confidence            589999999999999999999997 6999999999998653

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.08  E-value=9.2e-11  Score=86.73  Aligned_cols=63  Identities=30%  Similarity=0.545  Sum_probs=59.0

Q ss_pred             CccCCCCCCCCCCCceEEcccCC-CCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          168 PRLAQVPGIDSWPGKQMHSHNYR-IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       168 ~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |++|++||.+.|.|.++|+..|. ....+.+|+|+|||+|.||+|+|.++++.+..++++.|++
T Consensus         2 P~iP~~pG~e~F~G~v~HS~~~~~~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2           2 PQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCCChhhCCCcEEecCcCCCCCCCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            78999999999999999999996 4567899999999999999999999999999999999998

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=2.9e-11  Score=89.44  Aligned_cols=43  Identities=28%  Similarity=0.470  Sum_probs=40.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~   44 (259)
                      .|||+||||||+|++||.+|++.|.+|+|+|+.+.+||.|...
T Consensus         5 ~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~   47 (233)
T d1v59a1           5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNV   47 (233)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEe
Confidence            5899999999999999999999999999999999999988654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.08  E-value=3.7e-11  Score=93.08  Aligned_cols=40  Identities=40%  Similarity=0.617  Sum_probs=37.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~   42 (259)
                      ++|+|||||++||+||++|+++|++|+|||+++.+||.+.
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~   41 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLR   41 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceE
Confidence            6899999999999999999999999999999999998653

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.07  E-value=1.3e-10  Score=92.05  Aligned_cols=157  Identities=15%  Similarity=0.157  Sum_probs=81.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHH------cCCcEEEEeeCCCcCceeeeCCCCCC-CCCCCCCC----CCCcccc-ccccc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLR------EGHTVVVYEKGEQVGGSWIYTSETES-DPLGVDPN----RYPVHSS-LYKSL   69 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~------~g~~v~v~e~~~~~gg~~~~~~~~~~-~~~~~~~~----~~~~~~~-~~~~~   69 (259)
                      .|||+||||||||++||+.|++      .|++|+|+||+..+|....-...... ....+.+.    ....... .....
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~  111 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRF  111 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccceecceE
Confidence            4899999999999999999998      79999999999888632211000000 00000000    0000000 00000


Q ss_pred             eeccccccceecCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEec---
Q 024975           70 RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK---  146 (259)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g---  146 (259)
                      ..........+...+..    ...........+..+...+...++..++.  +.....+..+...+++.........   
T Consensus       112 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~--~~~~~~~~~~l~~~~g~~~~~~~~~~~~  185 (380)
T d2gmha1         112 GILTEKYRIPVPILPGL----PMNNHGNYVVRLGHLVSWMGEQAEALGVE--VYPGYAAAEILFHEDGSVKGIATNDVGI  185 (380)
T ss_dssp             EEECSSCEEECCCCTTS----TTCCTTCEECCHHHHHHHHHHHHHHTTCE--EETTCCEEEEEECTTSSEEEEEECCEEE
T ss_pred             EEeeccccccccccCch----hcccccceeehhhHHHHHHHHHHhhccce--eeeecceeeeeeccCCceeecccccccc
Confidence            00000000000000000    00011122245578889999999999998  8889999998876633322211100   


Q ss_pred             --C-------CceEEEEeCEEEEccCC
Q 024975          147 --D-------DVVEEETFDAVVVCNGH  164 (259)
Q Consensus       147 --~-------~~~~~~~ad~VIlAtG~  164 (259)
                        .       .......++..+++.|.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~~G~  212 (380)
T d2gmha1         186 QKDGAPKTTFERGLELHAKVTIFAEGC  212 (380)
T ss_dssp             CTTSCEEEEEECCCEEECSEEEECCCT
T ss_pred             cccccccccccccccccccEEEEeeeC
Confidence              0       00123567889999985

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.07  E-value=5.1e-11  Score=91.97  Aligned_cols=43  Identities=28%  Similarity=0.626  Sum_probs=39.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      ++++|+|||||++||++|+.|++.|++|+|+|+.+++||.+..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t   43 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD   43 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeE
Confidence            3689999999999999999999999999999999999998743

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=3.5e-12  Score=84.67  Aligned_cols=86  Identities=16%  Similarity=0.206  Sum_probs=67.2

Q ss_pred             CCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC----cccccCCC---CCCCc
Q 024975          172 QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEKQP---GYDNM  244 (259)
Q Consensus       172 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~----~~~~~~~~---~~~~~  244 (259)
                      .+||.+.|.+...+.+..++...+.+++|+|||+|.+|+|.|..|.+.+.+|++++|++.    +.+.+++.   ...++
T Consensus         2 ~ipge~~~~gkgV~yca~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~~~~~~~i   81 (126)
T d1trba2           2 GLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNI   81 (126)
T ss_dssp             CCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHHHHHHTSSE
T ss_pred             cCCCHHHhcCCCEEEEEecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccchhHHHHHHHHhhcccce
Confidence            466777788888888777777778899999999999999999999999999999999983    33444442   22444


Q ss_pred             eE--eeeeeEEeecc
Q 024975          245 WL--HSMVRTKKCSR  257 (259)
Q Consensus       245 ~~--~~~v~~~~~~~  257 (259)
                      .+  ++.++++.++.
T Consensus        82 ~~~~~~~v~~i~G~~   96 (126)
T d1trba2          82 ILHTNRTLEEVTGDQ   96 (126)
T ss_dssp             EEECSCEEEEEEECS
T ss_pred             eEecceEEEEEECCC
Confidence            44  57788888764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5.3e-11  Score=93.80  Aligned_cols=41  Identities=32%  Similarity=0.524  Sum_probs=38.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~   42 (259)
                      +.+|+|||||++||+||+.|.++|++|+|+|+++.+||.+.
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~   45 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA   45 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEE
Confidence            57899999999999999999999999999999999998643

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.06  E-value=5e-11  Score=87.95  Aligned_cols=42  Identities=26%  Similarity=0.430  Sum_probs=39.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      .|||+||||||+||+||.+|+++|.+|+|||+.+.+||.+..
T Consensus         6 dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~   47 (229)
T d1ojta1           6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLN   47 (229)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHH
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeec
Confidence            489999999999999999999999999999999989988754

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.05  E-value=1.2e-11  Score=86.66  Aligned_cols=102  Identities=23%  Similarity=0.333  Sum_probs=63.2

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceecCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY   83 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (259)
                      +|+|||||++|+.+|..|++ +.+|+|+|+.+.+.-.                     .......+..            
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~---------------------~~~~~~~~~~------------   47 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYS---------------------KPMLSHYIAG------------   47 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCC---------------------STTHHHHHTT------------
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccccc---------------------ccchhhhhhh------------
Confidence            79999999999999999975 6799999987533100                     0000000000            


Q ss_pred             CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccC
Q 024975           84 PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG  163 (259)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG  163 (259)
                                     ......+..+..+...+.+++  ++.+++|+.++...    .+...++.    .+.+|.+|+|+|
T Consensus        48 ---------------~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~----~~~~~~~~----~i~~D~li~a~G  102 (167)
T d1xhca1          48 ---------------FIPRNRLFPYSLDWYRKRGIE--IRLAEEAKLIDRGR----KVVITEKG----EVPYDTLVLATG  102 (167)
T ss_dssp             ---------------SSCGGGGCSSCHHHHHHHTEE--EECSCCEEEEETTT----TEEEESSC----EEECSEEEECCC
T ss_pred             ---------------hhhhhhhhHHHHHHHHhccce--eeeecccccccccc----cccccccc----ccccceeEEEEE
Confidence                           000012222334455567888  88899998886322    23344433    799999999999


Q ss_pred             C
Q 024975          164 H  164 (259)
Q Consensus       164 ~  164 (259)
                      .
T Consensus       103 ~  103 (167)
T d1xhca1         103 A  103 (167)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.04  E-value=1e-10  Score=83.15  Aligned_cols=36  Identities=28%  Similarity=0.371  Sum_probs=31.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      |+.+|+|||||++|+.+|..|++.|.++.|++..+.
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            677899999999999999999999988777776543

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.02  E-value=2.9e-09  Score=83.95  Aligned_cols=34  Identities=29%  Similarity=0.383  Sum_probs=31.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|++|||+|++|+.+|.+|+++|++|+|+|++.
T Consensus         7 ~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           7 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3799999999999999999999999999999964

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.02  E-value=5.7e-11  Score=77.66  Aligned_cols=82  Identities=12%  Similarity=0.093  Sum_probs=56.8

Q ss_pred             cCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC------CcccccCC---CC
Q 024975          170 LAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV------ADETHEKQ---PG  240 (259)
Q Consensus       170 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~------~~~~~~~~---~~  240 (259)
                      +|++||.+.    ...+..+.....  +++++|||+|++|+|+|..|.+.|.+||+++|++      ++++.+.+   ++
T Consensus         1 ~P~IpG~e~----~~ts~~~~~l~~--p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~   74 (117)
T d1onfa2           1 FPPVKGIEN----TISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMK   74 (117)
T ss_dssp             CCSCTTGGG----CEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHH
T ss_pred             CcccCCHhH----cCchhHHhccCC--CCEEEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHH
Confidence            477888753    233433333322  5899999999999999999999999999999988      33333332   22


Q ss_pred             C--CCceEeeeeeEEeecc
Q 024975          241 Y--DNMWLHSMVRTKKCSR  257 (259)
Q Consensus       241 ~--~~~~~~~~v~~~~~~~  257 (259)
                      +  .++..+++|++++...
T Consensus        75 ~~gV~i~~~~~v~~i~~~~   93 (117)
T d1onfa2          75 KNNINIVTFADVVEIKKVS   93 (117)
T ss_dssp             HTTCEEECSCCEEEEEESS
T ss_pred             hCCCEEEECCEEEEEEEcC
Confidence            2  3455568888887544

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.99  E-value=9.4e-10  Score=86.76  Aligned_cols=33  Identities=27%  Similarity=0.363  Sum_probs=31.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .||+|||+|++|+.+|.+|+++|++|+|+|++.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            489999999999999999999999999999964

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.97  E-value=2.7e-11  Score=90.04  Aligned_cols=36  Identities=28%  Similarity=0.357  Sum_probs=32.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQ   36 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~~   36 (259)
                      +.||++|||+||+|++||.++++.|. +|+|+|+...
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            46999999999999999999999885 6999998764

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.96  E-value=2.7e-10  Score=83.76  Aligned_cols=37  Identities=30%  Similarity=0.286  Sum_probs=33.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV   37 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~   37 (259)
                      +.|||+||||||+|++||.+|++.|.+|+|+|+....
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~   38 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK   38 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence            4699999999999999999999999999999996544

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.96  E-value=3.6e-10  Score=89.77  Aligned_cols=67  Identities=15%  Similarity=0.109  Sum_probs=45.5

Q ss_pred             HHHHHHHHhCCceeEEeceeEEEEEEeCC----CcEEEEEEecCCceEEEEeCE-EEEccCCCCCCccCCCCCC
Q 024975          108 YLQNFAREFGVDQVVRLHTEVLNARLVES----NKWKVKSRKKDDVVEEETFDA-VVVCNGHFSVPRLAQVPGI  176 (259)
Q Consensus       108 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~----~~~~v~~~~g~~~~~~~~ad~-VIlAtG~~s~~~~~~~~g~  176 (259)
                      ++....++.+++  ++.++.|++|..+++    ....|++.+.+++...+.|+. ||+|.|+...|.++...|+
T Consensus       230 ~~~p~~~~~nl~--i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl~SGI  301 (385)
T d1cf3a1         230 WLLPNYQRPNLQ--VLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGI  301 (385)
T ss_dssp             HTGGGTTCTTEE--EEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTB
T ss_pred             hcCchhcCCccc--ccCCceEEEEEEcCCCceeEEEEEEEEcCCCCEEEEEeCCEEEEcCchhhCHHHHHhcCC
Confidence            333344445777  999999999987653    123466554456667788887 9999998777776554443

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.93  E-value=2.4e-10  Score=75.47  Aligned_cols=73  Identities=15%  Similarity=0.095  Sum_probs=52.3

Q ss_pred             EEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC------Ccccc----cCCCCC-CCceEeeeeeE
Q 024975          184 MHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV------ADETH----EKQPGY-DNMWLHSMVRT  252 (259)
Q Consensus       184 ~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~------~~~~~----~~~~~~-~~~~~~~~v~~  252 (259)
                      +.+........ .+++++|||+|++|+|+|..+.+.|.+||+++|++      ++++.    +.+.+. .+++.++.|++
T Consensus        13 ~ts~~~l~l~~-~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~   91 (123)
T d1dxla2          13 VSSTGALALSE-IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVG   91 (123)
T ss_dssp             ECHHHHTTCSS-CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEE
T ss_pred             EeHHHhhCccc-cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCceEE
Confidence            33333433333 45899999999999999999999999999999999      23332    222222 56667788888


Q ss_pred             Eeecc
Q 024975          253 KKCSR  257 (259)
Q Consensus       253 ~~~~~  257 (259)
                      ++...
T Consensus        92 i~~~~   96 (123)
T d1dxla2          92 VDTSG   96 (123)
T ss_dssp             EECSS
T ss_pred             EEEcc
Confidence            87654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.92  E-value=4.9e-10  Score=79.38  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC--CcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g--~~v~v~e~~~~   36 (259)
                      -++|+|||||++|+.+|..|++.+  .+|+++|+.+.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            378999999999999999999986  48999999764

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.86  E-value=6.2e-10  Score=72.83  Aligned_cols=74  Identities=11%  Similarity=0.108  Sum_probs=53.0

Q ss_pred             ceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC------CcccccCC----CC-CCCceEeeee
Q 024975          182 KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV------ADETHEKQ----PG-YDNMWLHSMV  250 (259)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~------~~~~~~~~----~~-~~~~~~~~~v  250 (259)
                      .+..+......... +++++|||+|++|+|+|..|.+.|.+||+++|++      ++++.+.+    .+ ..+++.++.|
T Consensus         8 ~i~~s~~~l~~~~~-p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v   86 (117)
T d1ebda2           8 RILDSTGALNLGEV-PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALA   86 (117)
T ss_dssp             SEECHHHHHTCSSC-CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEE
T ss_pred             CEEChhHhhChhhc-CCeEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEE
Confidence            34444444444333 4899999999999999999999999999999999      33333332    22 2566667888


Q ss_pred             eEEeec
Q 024975          251 RTKKCS  256 (259)
Q Consensus       251 ~~~~~~  256 (259)
                      ++++..
T Consensus        87 ~~i~~~   92 (117)
T d1ebda2          87 KGAEER   92 (117)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            888754

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.84  E-value=1.1e-09  Score=87.14  Aligned_cols=35  Identities=31%  Similarity=0.390  Sum_probs=32.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC-CcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~~   36 (259)
                      +||++|||+|++|+.+|.+|++.+ .+|+|+|+++.
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            599999999999999999999987 79999999864

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=1.3e-09  Score=71.65  Aligned_cols=61  Identities=15%  Similarity=0.126  Sum_probs=46.8

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC------CcccccCC----C-CCCCceEeeeeeEEeec
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV------ADETHEKQ----P-GYDNMWLHSMVRTKKCS  256 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~------~~~~~~~~----~-~~~~~~~~~~v~~~~~~  256 (259)
                      .+++++|||+|++|+|+|..|.+.|.+||++.|++      ++++.+.+    . ...+++.++.|++++..
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~   93 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRN   93 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEEEEEEEe
Confidence            34899999999999999999999999999999999      33333333    1 12455566888888754

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.80  E-value=8.9e-10  Score=72.67  Aligned_cols=74  Identities=9%  Similarity=0.056  Sum_probs=50.6

Q ss_pred             eEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC------CcccccC----CCCC-CCceEeeeee
Q 024975          183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV------ADETHEK----QPGY-DNMWLHSMVR  251 (259)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~------~~~~~~~----~~~~-~~~~~~~~v~  251 (259)
                      +..+...... ...+++++|||+|+.|+|+|..+.+.|.+||++.|++      ++++.+.    +.+. ..+..++.|+
T Consensus        13 i~ts~~~l~l-~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~v~   91 (125)
T d1ojta2          13 IIDSSGALAL-KEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTV   91 (125)
T ss_dssp             EECHHHHTTC-CCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEE
T ss_pred             EEcHHHhhCc-cccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcEEE
Confidence            3444443333 3345899999999999999999999999999999999      3333322    2222 2344457777


Q ss_pred             EEeecc
Q 024975          252 TKKCSR  257 (259)
Q Consensus       252 ~~~~~~  257 (259)
                      +++...
T Consensus        92 ~v~~~~   97 (125)
T d1ojta2          92 AVEPKE   97 (125)
T ss_dssp             EEEEET
T ss_pred             EEEEcC
Confidence            776543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.79  E-value=2.7e-09  Score=79.83  Aligned_cols=36  Identities=28%  Similarity=0.447  Sum_probs=32.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG   38 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g   38 (259)
                      +||+|||||++||++|++|+++|.+|+|+||....+
T Consensus         7 ~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~   42 (268)
T d1c0pa1           7 KRVVVLGSGVIGLSSALILARKGYSVHILARDLPED   42 (268)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTC
T ss_pred             CcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            689999999999999999999999999999976433

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.76  E-value=7.1e-09  Score=73.36  Aligned_cols=36  Identities=25%  Similarity=0.367  Sum_probs=31.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV   37 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~   37 (259)
                      ..+|+|||||++|+.+|..|++.|.+++|++..+..
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            468999999999999999999999998888886543

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.74  E-value=3.9e-09  Score=77.88  Aligned_cols=43  Identities=26%  Similarity=0.366  Sum_probs=35.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC--------CCcCceeee
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG--------EQVGGSWIY   43 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~--------~~~gg~~~~   43 (259)
                      ++|||+||||||+|+++|.++++.|. +|+|+|+.        ..+||.|..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~~~~~~~~lGG~c~n   53 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVN   53 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSSBTTTBCCTTHHHHH
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecccCccccccccccccc
Confidence            58999999999999999999999886 68888874        235666543

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=3.5e-09  Score=81.50  Aligned_cols=42  Identities=24%  Similarity=0.406  Sum_probs=37.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc--CCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~--g~~v~v~e~~~~~gg~~~~   43 (259)
                      .+||+||||||+||+||+.|+++  |++|+|+|+++.+||.+..
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL   93 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence            37999999999999999999975  8999999999999987653

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.5e-09  Score=71.75  Aligned_cols=61  Identities=10%  Similarity=0.041  Sum_probs=46.0

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC------CcccccCC---CCCCCce--EeeeeeEEeecc
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV------ADETHEKQ---PGYDNMW--LHSMVRTKKCSR  257 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~------~~~~~~~~---~~~~~~~--~~~~v~~~~~~~  257 (259)
                      +++++|||+|++|+|+|..|.+.|.+||+++|++      ++++.+.+   +++.+++  .++.|++++...
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~   93 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTL   93 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEEET
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC
Confidence            4899999999999999999999999999999998      23333222   2233444  458888886543

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.69  E-value=5.8e-09  Score=71.79  Aligned_cols=94  Identities=14%  Similarity=0.084  Sum_probs=63.6

Q ss_pred             ccCCCCCCccC-CCCCCCCCCCceEEcccCCCCCCCCCCeEEEE--ccCcCHHHHHHHHhcccCeEEEEecCCC------
Q 024975          161 CNGHFSVPRLA-QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILI--GHYASGLDIKRDLAGFAKEVHIASRSVA------  231 (259)
Q Consensus       161 AtG~~s~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vi--G~G~~a~e~a~~l~~~~~~v~~~~r~~~------  231 (259)
                      |||  +.|..| ++||.+.-....+.+.........+++.++|+  |+|++|+|+|..|++.|.+||++++.+.      
T Consensus         4 atG--~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~   81 (156)
T d1djqa2           4 TDG--TNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHF   81 (156)
T ss_dssp             SSC--CCTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHH
T ss_pred             CCC--CCCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccc
Confidence            789  677766 68988753223444444444455566777776  9999999999999999999999999882      


Q ss_pred             ----cccccCCCC-CCCceEeeeeeEEeec
Q 024975          232 ----DETHEKQPG-YDNMWLHSMVRTKKCS  256 (259)
Q Consensus       232 ----~~~~~~~~~-~~~~~~~~~v~~~~~~  256 (259)
                          ..+.+.+.+ ...+..+..|..++..
T Consensus        82 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~  111 (156)
T d1djqa2          82 TLEYPNMMRRLHELHVEELGDHFCSRIEPG  111 (156)
T ss_dssp             TTCHHHHHHHHHHTTCEEEETEEEEEEETT
T ss_pred             hhHHHHHHHHHhhccceEEeccEEEEecCc
Confidence                112222222 2344455777777654

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.67  E-value=6.7e-09  Score=81.23  Aligned_cols=35  Identities=29%  Similarity=0.439  Sum_probs=32.1

Q ss_pred             CeEEEECCChHHHHHHHHHH-----HcCCcEEEEeeCCCc
Q 024975            3 RHVAVIGAGAAGLVVGHELL-----REGHTVVVYEKGEQV   37 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~-----~~g~~v~v~e~~~~~   37 (259)
                      |||+||||||+|+++|..|+     +.|++|+|||+.+.+
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            89999999999999999996     469999999998765

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.66  E-value=8.6e-09  Score=81.24  Aligned_cols=36  Identities=28%  Similarity=0.492  Sum_probs=33.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV   37 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~   37 (259)
                      .|||+|||+|++|+.+|.+|++.|++|+|+|++...
T Consensus         4 ~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           4 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            589999999999999999999999999999997543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.63  E-value=9.6e-09  Score=67.09  Aligned_cols=74  Identities=14%  Similarity=0.076  Sum_probs=52.2

Q ss_pred             eEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC------CcccccCC---CCCC--CceEeeeee
Q 024975          183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV------ADETHEKQ---PGYD--NMWLHSMVR  251 (259)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~------~~~~~~~~---~~~~--~~~~~~~v~  251 (259)
                      ++.+........ .+++++|||+|+.|+|+|..|.+.|.+|+++.|++      ++++.+.+   +++.  .++.++.|+
T Consensus         9 v~~s~~~l~l~~-~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v~   87 (119)
T d3lada2           9 IVDSTGALDFQN-VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVT   87 (119)
T ss_dssp             EEEHHHHTSCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEE
T ss_pred             EEchhHhhCccc-CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEEE
Confidence            344444443333 44889999999999999999999999999999999      33333222   2223  455567888


Q ss_pred             EEeecc
Q 024975          252 TKKCSR  257 (259)
Q Consensus       252 ~~~~~~  257 (259)
                      +++...
T Consensus        88 ~i~~~~   93 (119)
T d3lada2          88 GTEVKN   93 (119)
T ss_dssp             EEEECS
T ss_pred             EEEEeC
Confidence            887654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.62  E-value=1.7e-07  Score=64.25  Aligned_cols=34  Identities=15%  Similarity=0.198  Sum_probs=29.8

Q ss_pred             eEEEE--CCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 024975            4 HVAVI--GAGAAGLVVGHELLREGHTVVVYEKGEQV   37 (259)
Q Consensus         4 ~v~II--G~G~~Gl~~a~~L~~~g~~v~v~e~~~~~   37 (259)
                      .++|+  |||..|+.+|..|+++|.+|+++++.+.+
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            45555  99999999999999999999999997654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=8.6e-09  Score=67.04  Aligned_cols=61  Identities=10%  Similarity=0.114  Sum_probs=45.9

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC------CcccccCC---CCC--CCceEeeeeeEEeecc
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV------ADETHEKQ---PGY--DNMWLHSMVRTKKCSR  257 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~------~~~~~~~~---~~~--~~~~~~~~v~~~~~~~  257 (259)
                      +++++|||+|++|+|+|..|.+.|.+||+++|.+      ++++.+.+   +++  ..+..++.|++++...
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~   92 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNT   92 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECT
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcC
Confidence            4899999999999999999999999999999998      33333322   112  3444567787776643

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.55  E-value=1.8e-08  Score=66.08  Aligned_cols=63  Identities=11%  Similarity=0.061  Sum_probs=46.5

Q ss_pred             CCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC------cccc---cCCCCC--CCceEeeeeeEEeecc
Q 024975          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------DETH---EKQPGY--DNMWLHSMVRTKKCSR  257 (259)
Q Consensus       195 ~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~------~~~~---~~~~~~--~~~~~~~~v~~~~~~~  257 (259)
                      .++++++|+|+|++|+|+|..|.+.+.+|++++|++.      +++.   .+.+++  .+++.++.+++++...
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~   93 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDA   93 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEEEEEecC
Confidence            4579999999999999999999999999999999982      2111   112222  3444567888887654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=2.5e-08  Score=65.32  Aligned_cols=60  Identities=15%  Similarity=0.113  Sum_probs=43.8

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC-----CcccccCC---CCC--CCceEeeeeeEEee
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV-----ADETHEKQ---PGY--DNMWLHSMVRTKKC  255 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~-----~~~~~~~~---~~~--~~~~~~~~v~~~~~  255 (259)
                      .+++++|||+|++|+|+|..|.+.|.+||++.|++     ++++.+.+   +++  .+++.++.|++++.
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~   88 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQ   88 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEESCEEEEEEE
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEECCEEEEEEE
Confidence            34789999999999999999999999999999865     33333222   222  34445577777754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.51  E-value=9e-09  Score=66.86  Aligned_cols=47  Identities=15%  Similarity=0.246  Sum_probs=37.6

Q ss_pred             eEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ...+......... +++++|+|+|+.|+|+|..|.+.|.+||+++|.+
T Consensus         8 ~~~s~~~l~~~~~-p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2           8 VISSTEALAPKAL-PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             EECHHHHTCCSSC-CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             EECChHHhCcccC-CCeEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence            3334333333333 4899999999999999999999999999999998

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=2.7e-07  Score=63.61  Aligned_cols=49  Identities=16%  Similarity=0.180  Sum_probs=34.3

Q ss_pred             HHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEEccC
Q 024975          107 RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG  163 (259)
Q Consensus       107 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIlAtG  163 (259)
                      ..........++.  +..++++..+.  + +...+..   ++..+.+.||.||+|+|
T Consensus       112 ~~~~~~~~~~gv~--~~~~~~v~~i~--~-~gv~~~~---~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         112 WIHRTTLLSRGVK--MIPGVSYQKID--D-DGLHVVI---NGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHHHTTCE--EECSCEEEEEE--T-TEEEEEE---TTEEEEECCSEEEECCC
T ss_pred             HHHHHHHhhCCeE--EEeeeEEEEEc--C-CCCEEec---CCeEEEEECCEEEECCC
Confidence            3445666777888  88899888875  2 3344433   23346799999999999

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.48  E-value=6e-08  Score=75.98  Aligned_cols=35  Identities=26%  Similarity=0.548  Sum_probs=33.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.||++|||+|++|+.+|.+|++.|.+|+|+|++.
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            57999999999999999999999999999999984

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=1.7e-06  Score=56.54  Aligned_cols=94  Identities=22%  Similarity=0.248  Sum_probs=69.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+|||+|.+++-.|..|.+...+|+++-+.+.+.                                           
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~-------------------------------------------   66 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK-------------------------------------------   66 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC-------------------------------------------
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEecccccc-------------------------------------------
Confidence            3689999999999999999999988999998764220                                           


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCceeEEeceeEEEEEEeCCCcEEEEEEecC-CceEEEEeCEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVV  159 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~ad~VI  159 (259)
                           ..              .    .+.+.+.. .+++  +++++++.++.-+++..-.+.+.+.. ++.+.+.+|.|+
T Consensus        67 -----~~--------------~----~~~~~~~~~~~I~--v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvF  121 (126)
T d1fl2a2          67 -----AD--------------Q----VLQDKLRSLKNVD--IILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIF  121 (126)
T ss_dssp             -----SC--------------H----HHHHHHHTCTTEE--EESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEE
T ss_pred             -----cc--------------c----cccccccccccee--EEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEE
Confidence                 00              2    22333333 3577  99999999998764233447777643 677889999999


Q ss_pred             EccC
Q 024975          160 VCNG  163 (259)
Q Consensus       160 lAtG  163 (259)
                      ++-|
T Consensus       122 v~IG  125 (126)
T d1fl2a2         122 VQIG  125 (126)
T ss_dssp             ECSC
T ss_pred             EEeC
Confidence            9988

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.44  E-value=7.8e-08  Score=63.03  Aligned_cols=61  Identities=15%  Similarity=0.068  Sum_probs=45.9

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC-------cccccCC---CCC--CCceEeeeeeEEeec
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-------DETHEKQ---PGY--DNMWLHSMVRTKKCS  256 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~-------~~~~~~~---~~~--~~~~~~~~v~~~~~~  256 (259)
                      ..++++|||+|++|+|+|..|.+.|.+||+++|.+.       +++.+.+   ++.  .++..++.|+++++.
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~  101 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD  101 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECS
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcC
Confidence            468999999999999999999999999999999882       2222111   222  355556888888764

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=5.9e-06  Score=53.95  Aligned_cols=98  Identities=15%  Similarity=0.152  Sum_probs=73.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+|||+|-+++-.|..|.+...+|+++-|.+.+                                            
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~--------------------------------------------   62 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF--------------------------------------------   62 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC--------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc--------------------------------------------
Confidence            478999999999999999999999999999876422                                            


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcEEEEEEecC--CceEEEEeCEEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD--DVVEEETFDAVV  159 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~--~~~~~~~ad~VI  159 (259)
                                        ...+.+.+.+.+.....++.  +++++++.++.-++...-.|.+.+..  ...+.+.+|.|+
T Consensus        63 ------------------~~~~~~~~~~~~~~~~~~i~--~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvF  122 (126)
T d1trba2          63 ------------------RAEKILIKRLMDKVENGNII--LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLF  122 (126)
T ss_dssp             ------------------CCCHHHHHHHHHHHHTSSEE--EECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEE
T ss_pred             ------------------cchhHHHHHHHHhhccccee--EecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEE
Confidence                              00055566666666666777  88899999998765223347776643  234678999999


Q ss_pred             EccC
Q 024975          160 VCNG  163 (259)
Q Consensus       160 lAtG  163 (259)
                      ++.|
T Consensus       123 v~iG  126 (126)
T d1trba2         123 VAIG  126 (126)
T ss_dssp             ECSC
T ss_pred             EEeC
Confidence            9877

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.41  E-value=5.6e-08  Score=63.17  Aligned_cols=61  Identities=8%  Similarity=0.066  Sum_probs=43.1

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhcc---cCeEEEEecCC------Cccccc----CCCC-CCCceEeeeeeEEeec
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGF---AKEVHIASRSV------ADETHE----KQPG-YDNMWLHSMVRTKKCS  256 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~---~~~v~~~~r~~------~~~~~~----~~~~-~~~~~~~~~v~~~~~~  256 (259)
                      .+++++|||+|++|+|+|..+...   +.+||+++|.+      ++++.+    .+.+ ...++.++.|++++..
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~   93 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELN   93 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEEC
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEc
Confidence            358999999999999999877655   45799999998      222222    2222 2455566888888753

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.39  E-value=1.1e-07  Score=61.95  Aligned_cols=35  Identities=11%  Similarity=0.216  Sum_probs=33.6

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++++++|||+|++|+|+|..|.+.+.+||++.|++
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence            46899999999999999999999999999999999

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.38  E-value=3.6e-06  Score=56.98  Aligned_cols=33  Identities=27%  Similarity=0.346  Sum_probs=28.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      .+|+|||||-+|+-+|..|.+.|. +|+++.+.+
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            589999999999999999999986 477887643

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.36  E-value=4.6e-08  Score=64.11  Aligned_cols=60  Identities=18%  Similarity=0.174  Sum_probs=44.2

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC-----CcccccCC---CCCCCceE--eeeeeEEeec
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV-----ADETHEKQ---PGYDNMWL--HSMVRTKKCS  256 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~-----~~~~~~~~---~~~~~~~~--~~~v~~~~~~  256 (259)
                      +++++|||+|++|+|+|..|.+.|.+||+++|++     ++++.+.+   ++..++++  ++.|++++.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~~~~~  101 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEE  101 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECSCCEEEECSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccCCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCC
Confidence            4789999999999999999999999999999998     23322222   22235554  4677766544

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.32  E-value=1.7e-07  Score=60.84  Aligned_cols=60  Identities=12%  Similarity=0.088  Sum_probs=43.2

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcc---cCeEEEEecCC------CcccccCC---CCC--CCceEeeeeeEEeec
Q 024975          197 DQVVILIGHYASGLDIKRDLAGF---AKEVHIASRSV------ADETHEKQ---PGY--DNMWLHSMVRTKKCS  256 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~---~~~v~~~~r~~------~~~~~~~~---~~~--~~~~~~~~v~~~~~~  256 (259)
                      +++++|||+|++|+|+|..+.+.   +.+|+++.|.+      ++++.+.+   +++  .+++.++.|++++..
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~   91 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKN   91 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEEC
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEEEEEC
Confidence            48999999999999999876544   78999999988      23333222   222  345556888888754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.27  E-value=1.4e-07  Score=62.71  Aligned_cols=61  Identities=15%  Similarity=0.107  Sum_probs=44.7

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC-------cccc---cCCCCC--CCceEeeeeeEEeec
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-------DETH---EKQPGY--DNMWLHSMVRTKKCS  256 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~-------~~~~---~~~~~~--~~~~~~~~v~~~~~~  256 (259)
                      .+++++|||+|++|+|+|..|.+.+.+||++++.+.       +++.   ++.++.  ..+..++.|++++..
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~  106 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMS  106 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEC
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCCeEEEEEEe
Confidence            468999999999999999999999999999999982       1111   111222  344455777777653

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.18  E-value=1.5e-07  Score=69.38  Aligned_cols=31  Identities=32%  Similarity=0.360  Sum_probs=26.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEee
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEK   33 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~   33 (259)
                      .+|+|||||++|+++|++|+++|.+|+++|+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            3699999999999999999999987665555

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.16  E-value=4.5e-07  Score=70.61  Aligned_cols=34  Identities=24%  Similarity=0.419  Sum_probs=31.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .||++|||+|++|+.+|.+|++. .+|+|+|+++.
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            38999999999999999999986 89999999864

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.11  E-value=8.6e-07  Score=60.14  Aligned_cols=37  Identities=19%  Similarity=0.245  Sum_probs=32.3

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhccc-CeEEEEecCC
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~-~~v~~~~r~~  230 (259)
                      +..+++|+|||||.+|+|+|..+.+.+ ..|++++|++
T Consensus        42 p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          42 PSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             ccCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            344678999999999999999998885 6799999998

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.10  E-value=2.7e-05  Score=50.91  Aligned_cols=93  Identities=16%  Similarity=0.184  Sum_probs=66.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccccccccceeccccccceec
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
                      .++|+|||+|-+++-.|..|++.-.+|+++-|.+.+.+                                          
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra------------------------------------------   71 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA------------------------------------------   71 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS------------------------------------------
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc------------------------------------------
Confidence            47899999999999999999999889999988653310                                          


Q ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceeEEeceeEEEEEEeCCCcE--EEEEEec-CCceEEEEeCEE
Q 024975           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW--KVKSRKK-DDVVEEETFDAV  158 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~--~v~~~~g-~~~~~~~~ad~V  158 (259)
                                          ...+.   .+....-+++  +++++++..+.-+....+  .+.+++. +++...+.+|-|
T Consensus        72 --------------------~~~~~---~~l~~~~nI~--v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGv  126 (130)
T d1vdca2          72 --------------------SKIMQ---QRALSNPKID--VIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGL  126 (130)
T ss_dssp             --------------------CHHHH---HHHHTCTTEE--EECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEE
T ss_pred             --------------------chhhh---hccccCCceE--EEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEE
Confidence                                02222   2222333566  999999999987642222  3566653 366778999999


Q ss_pred             EEc
Q 024975          159 VVC  161 (259)
Q Consensus       159 IlA  161 (259)
                      ++|
T Consensus       127 FVa  129 (130)
T d1vdca2         127 FFA  129 (130)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            987

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=3.2e-06  Score=52.13  Aligned_cols=35  Identities=29%  Similarity=0.340  Sum_probs=32.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .++|+|+|.|.+|+++|..|.+.|.+|+++|....
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            46899999999999999999999999999999653

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=7.8e-07  Score=61.17  Aligned_cols=53  Identities=23%  Similarity=0.238  Sum_probs=42.9

Q ss_pred             CccCCCCCCCCCCCceEEcccCCCCCCCCCCeEEEEccCcCHHHHHHHHhcccCe
Q 024975          168 PRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE  222 (259)
Q Consensus       168 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~  222 (259)
                      |+.|++||.+.  ...++..++.......+++|+|||+|++|+|+|..+.+.|..
T Consensus         2 Pr~p~IpG~d~--~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2           2 PRTPPIDGIDH--PKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             ECCCCCBTTTS--TTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             CCCCCCCCCCC--CCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCc
Confidence            77889999774  345555666666667789999999999999999999998764

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=3.2e-06  Score=56.24  Aligned_cols=61  Identities=13%  Similarity=0.077  Sum_probs=43.1

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhc----ccCeEEEEecCCC-------cccccCC---CCC--CCceEeeeeeEEeec
Q 024975          196 QDQVVILIGHYASGLDIKRDLAG----FAKEVHIASRSVA-------DETHEKQ---PGY--DNMWLHSMVRTKKCS  256 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~----~~~~v~~~~r~~~-------~~~~~~~---~~~--~~~~~~~~v~~~~~~  256 (259)
                      ..++++|||+|++|+|+|.+|.+    .+.+|+++.+.+.       +++.+.+   ++.  ..+..++.|++++..
T Consensus        36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~  112 (137)
T d1m6ia2          36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVS  112 (137)
T ss_dssp             HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEEEEEec
Confidence            35899999999999999999953    4789999999882       2222111   222  344456888888765

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.81  E-value=1.1e-05  Score=56.38  Aligned_cols=34  Identities=24%  Similarity=0.417  Sum_probs=31.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +++|+|||+|..|+++|..|.++|++|.++|+.+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4789999999999999999999999999999964

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.79  E-value=1e-05  Score=56.22  Aligned_cols=34  Identities=21%  Similarity=0.154  Sum_probs=32.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .++|+|||||..|..+|.+|.+.|++|+|+|++.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            5789999999999999999999999999999974

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=2.5e-05  Score=47.88  Aligned_cols=50  Identities=16%  Similarity=0.184  Sum_probs=43.0

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCcccccCCCCCCC
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDN  243 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~  243 (259)
                      ++.+++|+|+|.|.||.-+|..|.+.|.+|+++..++.++..+.+.....
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~   51 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVE   51 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSC
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccc
Confidence            45789999999999999999999999999999999987777776665433

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.74  E-value=8.1e-06  Score=57.59  Aligned_cols=34  Identities=15%  Similarity=0.223  Sum_probs=32.0

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccC-eEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~-~v~~~~r~~  230 (259)
                      ++||+|||+|++|+++|..|.+.|. +|+++.|++
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC
Confidence            5899999999999999999999986 699999999

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=2.3e-05  Score=54.25  Aligned_cols=36  Identities=17%  Similarity=0.242  Sum_probs=33.8

Q ss_pred             CCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ...++|+|||+|++|+++|..|.+.|.+|+++.+.+
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            356999999999999999999999999999999988

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.63  E-value=2.8e-05  Score=51.11  Aligned_cols=34  Identities=21%  Similarity=0.479  Sum_probs=31.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      ++|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            4799999999999999999999999999999753

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.58  E-value=2.6e-05  Score=54.35  Aligned_cols=35  Identities=17%  Similarity=0.215  Sum_probs=31.0

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+++|+|||+|++|+|+|..|.+.+.+++++.+.+
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence            36899999999999999999999998887777666

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=4.6e-05  Score=52.12  Aligned_cols=36  Identities=28%  Similarity=0.356  Sum_probs=32.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG   38 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~g   38 (259)
                      ++|+|||+|..|..+|..|.+.|++|+++++.+...
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~   36 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPY   36 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHh
Confidence            479999999999999999999999999999986543

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.55  E-value=5e-05  Score=54.80  Aligned_cols=36  Identities=25%  Similarity=0.316  Sum_probs=32.1

Q ss_pred             CCCCeEEEEccCcCHHHHHHHHhc---------------------ccCeEEEEecCC
Q 024975          195 FQDQVVILIGHYASGLDIKRDLAG---------------------FAKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G~~a~e~a~~l~~---------------------~~~~v~~~~r~~  230 (259)
                      ..+++|+|||+|++|+|+|+.+.+                     ...+|+++.|++
T Consensus        37 ~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          37 LSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             TTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             ccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            457999999999999999999987                     246899999998

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=6e-05  Score=52.87  Aligned_cols=35  Identities=37%  Similarity=0.626  Sum_probs=32.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |.++|+|||+|.-|...|..+++.|++|+++|+++
T Consensus         3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            34799999999999999999999999999999974

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.50  E-value=3.4e-05  Score=53.46  Aligned_cols=34  Identities=15%  Similarity=0.196  Sum_probs=31.0

Q ss_pred             CCeEEEEccCcCHHHHHHHHhccc--CeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFA--KEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~--~~v~~~~r~~  230 (259)
                      +|+|+|||+|++|+++|..|.+.+  .+|+++++.+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            689999999999999999998876  4799999887

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.46  E-value=6.3e-05  Score=49.46  Aligned_cols=33  Identities=39%  Similarity=0.548  Sum_probs=31.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++++|||+|..|..+|..|.+.|++|+++|+++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            479999999999999999999999999999974

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=4.7e-05  Score=51.23  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=35.8

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCccc
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADET  234 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~  234 (259)
                      ...+++|+|||+|..|.+-+..|++.|.+||++++...+++
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l   50 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSI   50 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEECTTH
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCHHH
Confidence            35689999999999999999999999999999987654443

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.45  E-value=8.6e-05  Score=53.13  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=30.9

Q ss_pred             CCCCeEEEEccCcCHHHHHHHHh--------------------cc-cCeEEEEecCC
Q 024975          195 FQDQVVILIGHYASGLDIKRDLA--------------------GF-AKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G~~a~e~a~~l~--------------------~~-~~~v~~~~r~~  230 (259)
                      ..+++|+|||+|++|+|+|+.++                    +. ..+|+++.|+.
T Consensus        37 ~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          37 LSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             ccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            45799999999999999999886                    33 46799999998

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.41  E-value=0.00012  Score=49.36  Aligned_cols=34  Identities=18%  Similarity=0.330  Sum_probs=31.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+|+|||+|.+|+.++..+.+.|.+|.++|.+.
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            4689999999999999999999999999999963

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.34  E-value=0.00015  Score=49.63  Aligned_cols=34  Identities=29%  Similarity=0.296  Sum_probs=31.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+|+|||+|.+|+.++..+.+.|..|.++|.+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            4689999999999999999999999999999874

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.33  E-value=9.3e-05  Score=50.53  Aligned_cols=32  Identities=19%  Similarity=0.479  Sum_probs=28.5

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .||+|||+|++|+|+|..|.+ +.+||++.|.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            379999999999999999976 56899999877

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.31  E-value=6.3e-05  Score=52.61  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |.+|+|||+|.-|.++|..|.+.|.+|.++.+++
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            5689999999999999999999999999999864

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.28  E-value=0.00012  Score=51.80  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++|+|||+|..|+.+|..|++.|++|+.+|.+.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            369999999999999999999999999999864

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.26  E-value=0.00013  Score=46.42  Aligned_cols=45  Identities=9%  Similarity=0.061  Sum_probs=38.8

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCCcccccCC
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQ  238 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~~~  238 (259)
                      +..+++|+|+|+|.+|..-+..|.+.|..|+++.....+++.+..
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~   53 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWA   53 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHH
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHH
Confidence            346799999999999999999999999999999988866655444

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=5e-05  Score=53.23  Aligned_cols=35  Identities=9%  Similarity=0.075  Sum_probs=32.0

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++++|+|||+|++|++.|..+.+.+.+|++++|.+
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            35789999999999999999999999999998765

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.22  E-value=0.00011  Score=55.55  Aligned_cols=34  Identities=24%  Similarity=0.180  Sum_probs=32.3

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|+|+|||+|++|+-+|..|++.|.+|+++++++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4899999999999999999999999999999887

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.20  E-value=0.00014  Score=55.20  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=32.8

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++|+|||+|++|+-+|..|++.|.+|+++++++
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence            5899999999999999999999999999999999

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.20  E-value=0.00015  Score=50.52  Aligned_cols=33  Identities=24%  Similarity=0.423  Sum_probs=31.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++|+|||+|..|...|..++..|++|+++|+++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            679999999999999999999999999999974

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.13  E-value=0.00027  Score=47.44  Aligned_cols=34  Identities=15%  Similarity=0.412  Sum_probs=31.6

Q ss_pred             CCeEEEEC-CChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIG-AGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG-~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+|+||| .|.-|.++|..|.+.|++|.++|+..
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            57999999 79999999999999999999999864

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.09  E-value=0.00042  Score=43.86  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .++|+|||+|..|..-|..|.+.|.+|+++++..
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            4689999999999999999999999999998754

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.00029  Score=47.14  Aligned_cols=33  Identities=21%  Similarity=0.374  Sum_probs=30.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      .++|+|||||..|+.-|..|.+.|.+|+|+.+.
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            478999999999999999999999999999764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.04  E-value=0.00039  Score=46.16  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=30.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      .++|+|||+|..|.++|+.|...+.  +++++|.+.
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            3689999999999999999999874  899999864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.03  E-value=0.00039  Score=47.29  Aligned_cols=33  Identities=24%  Similarity=0.493  Sum_probs=30.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++|.|||+|.-|.+.|..|.+.|++|+++|+++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            369999999999999999999999999999964

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=97.01  E-value=0.00019  Score=54.75  Aligned_cols=35  Identities=26%  Similarity=0.360  Sum_probs=32.7

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+++|+|||+|.+|+-+|..|.+.|.+|+++++++
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45899999999999999999999999999999877

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.98  E-value=0.00052  Score=46.03  Aligned_cols=34  Identities=29%  Similarity=0.372  Sum_probs=30.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      +++|+|||+|..|.++|+.|...++ +++++|.++
T Consensus         7 ~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           7 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            5789999999999999999988876 899999865

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00046  Score=40.07  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=31.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++.|.|+|+|.=|-+++....+.|+++.++|+.+
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            4789999999999999999999999999999875

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.96  E-value=0.00032  Score=51.28  Aligned_cols=34  Identities=29%  Similarity=0.355  Sum_probs=31.9

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++|+|||+|.+|+-+|..|++.|.+|++++|..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4789999999999999999999999999999975

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.96  E-value=0.00043  Score=47.82  Aligned_cols=32  Identities=28%  Similarity=0.514  Sum_probs=29.5

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      ++|+|||+|.-|.++|..|.+.|.+|.++.+.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            47999999999999999999999999999763

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.96  E-value=0.00027  Score=49.69  Aligned_cols=32  Identities=19%  Similarity=0.346  Sum_probs=28.7

Q ss_pred             eEEEEccCcCHHHHHHHHhcc--cCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGF--AKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~--~~~v~~~~r~~  230 (259)
                      +|+|||+|++|+|+|..|.+.  +.+|++++|.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            699999999999999999877  45799999876

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.95  E-value=0.00042  Score=50.01  Aligned_cols=36  Identities=22%  Similarity=0.301  Sum_probs=33.7

Q ss_pred             CCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ...++|+|||+|++|+.+|..|.+.|.+|+++.+++
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence            356999999999999999999999999999999988

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.92  E-value=0.00032  Score=51.43  Aligned_cols=34  Identities=24%  Similarity=0.273  Sum_probs=32.1

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++|+|||+|++|+-+|..|.+.|.+|++++|++
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            5789999999999999999999999999999976

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.89  E-value=0.00016  Score=50.19  Aligned_cols=33  Identities=12%  Similarity=0.093  Sum_probs=27.6

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++|+|||+|++|+|+|..|.+.+.+++++.+++
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEec
Confidence            569999999999999999999887766665544

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.87  E-value=0.00058  Score=46.28  Aligned_cols=34  Identities=26%  Similarity=0.518  Sum_probs=31.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |.+|.+||.|.-|...|.+|.++|++|.++|+++
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            5789999999999999999999999999999974

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00034  Score=53.64  Aligned_cols=35  Identities=31%  Similarity=0.445  Sum_probs=32.7

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +.++|+|||+|.+|+-+|..|.+.|.+|+++++++
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            34789999999999999999999999999999988

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00096  Score=41.88  Aligned_cols=34  Identities=26%  Similarity=0.391  Sum_probs=31.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .+|.|+|||.-|.++|..+.+.|+++.++|+++.
T Consensus        12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            5799999999999999999999999999999753

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.83  E-value=0.00029  Score=51.96  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=29.9

Q ss_pred             eEEEEccCcCHHHHHHHHhccc-CeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFA-KEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~-~~v~~~~r~~  230 (259)
                      +|+|||+|++|+-+|..|.+.| .+|+++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            6999999999999999999999 4799999987

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.82  E-value=0.00074  Score=44.77  Aligned_cols=33  Identities=33%  Similarity=0.636  Sum_probs=29.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      ++|+|||+|..|.++|+.|..++.  +++++|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            689999999999999999999875  899999864

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00043  Score=47.82  Aligned_cols=32  Identities=13%  Similarity=0.085  Sum_probs=29.9

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .|+|||+|++|+++|..+.+.|.+|++++++.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~   34 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERF   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSST
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEec
Confidence            48999999999999999999999999999865

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.79  E-value=0.001  Score=44.70  Aligned_cols=34  Identities=18%  Similarity=0.368  Sum_probs=31.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      .++|+|||+|..|.++|+.|...++  +++++|.++
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            4699999999999999999999987  899999864

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.78  E-value=0.00043  Score=52.85  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=30.0

Q ss_pred             CeEEEEccCcCHHHHHHHHhccc--CeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFA--KEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~--~~v~~~~r~~  230 (259)
                      |+|+|||+|.+|+-+|..|++.+  .+|++++|++
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            78999999999999999998765  4899999997

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.76  E-value=0.001  Score=43.91  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=30.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      +.+|.|||+|..|.++|+.|...+. +++++|..+
T Consensus         1 r~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           1 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            3689999999999999999998876 899999865

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.73  E-value=0.0011  Score=43.62  Aligned_cols=34  Identities=29%  Similarity=0.439  Sum_probs=30.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      +.+|+|||+|..|.++|+.|...++  +++++|.++
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            4689999999999999999999886  899999864

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.72  E-value=0.0011  Score=45.53  Aligned_cols=34  Identities=18%  Similarity=0.281  Sum_probs=31.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..+|.|||.|.-|..+|.+|.+.|++|.++|+++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            4689999999999999999999999999999975

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.0005  Score=51.63  Aligned_cols=32  Identities=19%  Similarity=0.223  Sum_probs=30.7

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++|||+|++|+-+|..|++.|.+|+++++++
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            58999999999999999999999999999998

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.71  E-value=0.00031  Score=49.13  Aligned_cols=34  Identities=6%  Similarity=-0.055  Sum_probs=31.0

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +++|+|||+|++|++.|..+.+.+.+++++.+..
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            4689999999999999999999999999998665

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.71  E-value=0.00039  Score=52.05  Aligned_cols=32  Identities=22%  Similarity=0.291  Sum_probs=30.6

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|+|||+|++|+-+|..|.+.|.+|+++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            59999999999999999999999999999987

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.64  E-value=0.0013  Score=43.25  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=29.5

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      .+|+|||+|-.|.++|+.|...+.  ++.++|..+
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            589999999999999999999876  899999865

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.63  E-value=0.0014  Score=44.94  Aligned_cols=34  Identities=18%  Similarity=0.195  Sum_probs=32.6

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .|+|+|+|+|.+|.-+|..|.+.+.+|+++.|..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            5899999999999999999999999999999998

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.63  E-value=0.0015  Score=43.06  Aligned_cols=33  Identities=27%  Similarity=0.418  Sum_probs=29.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      .+|+|||+|..|.++|+.|...+.  ++.++|.++
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            379999999999999999999874  899999875

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.61  E-value=0.0014  Score=44.67  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=30.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      |++|+|||.|.-|-++|..|.+.|.  +|..+|+++
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            5689999999999999999999986  678888864

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.56  E-value=0.0015  Score=43.35  Aligned_cols=33  Identities=33%  Similarity=0.518  Sum_probs=29.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      .+|.|||+|..|.++|+.|...+.  ++.++|..+
T Consensus         7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            589999999999999999999876  799999864

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.00067  Score=49.25  Aligned_cols=32  Identities=19%  Similarity=0.055  Sum_probs=30.7

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            49999999999999999999999999999987

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.53  E-value=0.0016  Score=43.64  Aligned_cols=33  Identities=18%  Similarity=0.456  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      .+|.|||+|..|.++|+.|...++  +++++|.++
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            579999999999999999999876  799999864

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.52  E-value=0.0013  Score=44.33  Aligned_cols=33  Identities=30%  Similarity=0.528  Sum_probs=30.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|.|||.|.-|...|..|.+.|++|.++|+++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            369999999999999999999999999999974

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.0018  Score=44.06  Aligned_cols=33  Identities=18%  Similarity=0.266  Sum_probs=30.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..|+|+|+|+.|+.++..+...|.+|+++|.++
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccch
Confidence            469999999999999998888999999999975

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.50  E-value=0.00084  Score=48.17  Aligned_cols=33  Identities=15%  Similarity=0.276  Sum_probs=29.7

Q ss_pred             CeEEEEccCcCHHHHHHHHhcc--cCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGF--AKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~--~~~v~~~~r~~  230 (259)
                      ++|+|||+|++|+.+|..|.+.  +.+|+++.+.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            5899999999999999999765  56899999998

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.49  E-value=0.0014  Score=44.64  Aligned_cols=33  Identities=36%  Similarity=0.370  Sum_probs=30.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..|+|+|+|+.|+.++..+...|.+|+++|+++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            469999999999999999999999999999874

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.48  E-value=0.0012  Score=46.13  Aligned_cols=32  Identities=28%  Similarity=0.342  Sum_probs=28.5

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++|+|||.|..|+.+|..|+ .|.+|+.+|.++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            47999999999999998776 599999999874

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.47  E-value=0.00067  Score=48.84  Aligned_cols=33  Identities=15%  Similarity=0.074  Sum_probs=30.2

Q ss_pred             CeEEEEccCcCHHHHHHHHhccc-------CeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFA-------KEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~-------~~v~~~~r~~  230 (259)
                      .+|+|||+|++|+.+|..|.+.|       .+|+++.+.+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            58999999999999999998886       4799999988

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.46  E-value=0.0018  Score=42.60  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=29.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      .+|.|||+|-.|.++|+.|...+.  ++.++|.++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            489999999999999999998875  799999864

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.46  E-value=0.0018  Score=40.36  Aligned_cols=33  Identities=12%  Similarity=0.008  Sum_probs=28.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      .++|+|||+|.+|+-+|..|++...+++++-+.
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            478999999999999999999988887776554

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.44  E-value=0.0018  Score=44.38  Aligned_cols=33  Identities=24%  Similarity=0.472  Sum_probs=30.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++|-|||.|.-|..+|.+|.+.|++|.++|+++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            479999999999999999999999999999864

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.43  E-value=0.0017  Score=51.67  Aligned_cols=42  Identities=26%  Similarity=0.433  Sum_probs=39.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCcCceeee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~gg~~~~   43 (259)
                      .+||+|+|-|..=..+|..|++.|.+|+=+|+++.=||.|..
T Consensus         6 e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aS   47 (491)
T d1vg0a1           6 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS   47 (491)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             ccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccc
Confidence            589999999999999999999999999999999999988753

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.41  E-value=0.0018  Score=45.01  Aligned_cols=33  Identities=33%  Similarity=0.479  Sum_probs=29.9

Q ss_pred             CeEEEE-CCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVI-GAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~II-G~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++|+|| |+|.-|.++|..|++.|++|++..|++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            369999 679999999999999999999999874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0017  Score=44.29  Aligned_cols=33  Identities=33%  Similarity=0.351  Sum_probs=29.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ..|+|+|+|+.|+.++..+...|. +|+++|+++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            469999999999999999999998 799999874

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.40  E-value=0.011  Score=42.11  Aligned_cols=33  Identities=24%  Similarity=0.319  Sum_probs=28.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHc--------------------CC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE--------------------GH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~--------------------g~-~v~v~e~~~   35 (259)
                      ++|+|||+|-.++=||..|.+.                    |. +|.++.+..
T Consensus        40 k~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          40 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             ceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            6899999999999999999883                    54 799998864

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0027  Score=43.18  Aligned_cols=34  Identities=26%  Similarity=0.203  Sum_probs=31.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .++|+|+|+|-++-++++.|.+.|.++.|+.|+.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            3689999999999999999999999999998863

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0027  Score=42.32  Aligned_cols=33  Identities=21%  Similarity=0.217  Sum_probs=30.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      -+|+|+|.|..|..++..|.+.|.+++++|.++
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            369999999999999999999999999999865

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.32  E-value=0.0032  Score=41.79  Aligned_cols=33  Identities=18%  Similarity=0.440  Sum_probs=29.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      .+|.|||+|..|.++|+.|...++ ++.++|.++
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            589999999999999998888775 899999864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.32  E-value=0.002  Score=43.59  Aligned_cols=33  Identities=24%  Similarity=0.280  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..|+|+|+|+.|+.++..+...|.+|+++|+++
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            469999999999999999988999999999864

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.26  E-value=0.0028  Score=41.58  Aligned_cols=33  Identities=21%  Similarity=0.470  Sum_probs=29.0

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      .+|+|||+|-.|.++|+.|...+.  ++.++|.++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            379999999999999999998875  899999764

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.25  E-value=0.0025  Score=41.99  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=29.2

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      .+|+|||| |..|.++|+.|...+.  ++.++|..+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            36999996 9999999999999885  899999864

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0017  Score=46.00  Aligned_cols=32  Identities=16%  Similarity=0.166  Sum_probs=30.1

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++|||+|+.|+.+|..+.+.|.+|.++.+.+
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            48999999999999999999999999999865

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.21  E-value=0.0026  Score=41.94  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=28.5

Q ss_pred             eEEEECC-ChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            4 HVAVIGA-GAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~-G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      +|+|||| |..|.++|+.|...+.  +++++|.++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            7999996 9999999999998876  799999864

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=96.16  E-value=0.0016  Score=47.96  Aligned_cols=32  Identities=22%  Similarity=0.150  Sum_probs=30.5

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .|+|||+|.+|+-+|.+|++.|.+|+++.|.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999976

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0039  Score=43.69  Aligned_cols=34  Identities=26%  Similarity=0.495  Sum_probs=31.5

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |++|+|+|| |..|..++.+|.++|++|+++.|++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            689999996 9999999999999999999998864

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.11  E-value=0.043  Score=38.55  Aligned_cols=34  Identities=32%  Similarity=0.386  Sum_probs=27.6

Q ss_pred             CCeEEEECCChHHHHHHHHHH--------------------HcCC-cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELL--------------------REGH-TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~--------------------~~g~-~v~v~e~~~   35 (259)
                      .++|+|||+|-.++=+|..|.                    +.+. +|.++-|..
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            368999999999999998887                    4455 688887753

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.11  E-value=0.0017  Score=44.73  Aligned_cols=34  Identities=15%  Similarity=0.040  Sum_probs=32.0

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++++|||+|..|.-+|..|.+.|.+|+++.|++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3789999999999999999999999999999986

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.11  E-value=0.002  Score=47.33  Aligned_cols=33  Identities=18%  Similarity=0.174  Sum_probs=30.7

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccC-eEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAK-EVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~-~v~~~~r~~  230 (259)
                      -+|+|||+|++|+=+|..|.+.|. +|++++|++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            469999999999999999999994 899999988

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.11  E-value=0.0014  Score=48.72  Aligned_cols=33  Identities=27%  Similarity=0.230  Sum_probs=31.3

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+|+|||+|++|+-+|..|.+.|.+|++++|++
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            369999999999999999999999999999987

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.10  E-value=0.0017  Score=46.09  Aligned_cols=33  Identities=15%  Similarity=0.117  Sum_probs=30.6

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      -.|+|||+|+.|+.+|..+++.|.+|+++.+++
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            359999999999999999999999999999875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.10  E-value=0.0027  Score=43.70  Aligned_cols=33  Identities=27%  Similarity=0.296  Sum_probs=29.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ..|+|+|+|+.|+.++..+...|. +|+++|+++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CEEEEECCCccchhheeccccccccccccccccc
Confidence            468999999999999999999997 799999864

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.08  E-value=0.0035  Score=41.71  Aligned_cols=33  Identities=27%  Similarity=0.361  Sum_probs=30.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|.|||.|..|.++|..|.+.|++++++++.+
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            369999999999999999999999999998764

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.02  E-value=0.0017  Score=46.13  Aligned_cols=33  Identities=9%  Similarity=0.120  Sum_probs=30.6

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..++|||+|+.|+++|..+.+.|.+|+++.+..
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            569999999999999999999999999998764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0019  Score=49.27  Aligned_cols=32  Identities=19%  Similarity=0.182  Sum_probs=30.3

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .|+|||+|.+|+-.|..|.+.|.+|+++++++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            38999999999999999999999999999877

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.94  E-value=0.0022  Score=47.94  Aligned_cols=33  Identities=12%  Similarity=0.309  Sum_probs=29.9

Q ss_pred             CeEEEEccCcCHHHHHHHHhccc-CeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFA-KEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~-~~v~~~~r~~  230 (259)
                      .+|+|||+|.+|+-+|..|++.| .+|+++.|.+
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            36999999999999999999998 4799999885

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.90  E-value=0.0026  Score=47.58  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=31.4

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .-+|+|||+|.+|+-+|..|.+.|.+|+++.+.+
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            4579999999999999999999999999999876

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=95.90  E-value=0.0022  Score=46.44  Aligned_cols=32  Identities=28%  Similarity=0.211  Sum_probs=30.4

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .|+|||+|++|+-+|..|.+.|.+|+++++.+
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   35 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999876

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.006  Score=38.78  Aligned_cols=33  Identities=24%  Similarity=0.446  Sum_probs=30.0

Q ss_pred             CeEEEECCCh-----------HHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGA-----------AGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~-----------~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++|+|||+||           ++..++..|++.|++++++..++
T Consensus         8 kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP   51 (127)
T d1a9xa3           8 KSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNP   51 (127)
T ss_dssp             CEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCT
T ss_pred             CEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCch
Confidence            6899999997           78899999999999999998875

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=95.85  E-value=0.0024  Score=46.49  Aligned_cols=33  Identities=30%  Similarity=0.322  Sum_probs=31.1

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..|+|||+|++|+-+|..+.+.|.+|+++++.+
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~   37 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK   37 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            459999999999999999999999999999987

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.85  E-value=0.0052  Score=41.59  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=30.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      .++|+|+|+|-++-++++.|.+.|. ++.|+.|+.
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            3679999999999999999999997 799998863

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0056  Score=41.42  Aligned_cols=33  Identities=27%  Similarity=0.380  Sum_probs=29.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..|+|+|+|+.|+.++..+...|.++++++..+
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            469999999999999999999999999998864

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.79  E-value=0.003  Score=44.70  Aligned_cols=33  Identities=15%  Similarity=0.222  Sum_probs=30.5

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..++|||+|+.|+++|..+++.|.+|+++.+..
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            358999999999999999999999999999875

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.011  Score=37.03  Aligned_cols=34  Identities=15%  Similarity=0.277  Sum_probs=30.4

Q ss_pred             CCeEEEECCCh-----------HHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGA-----------AGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~-----------~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .++|+|||+||           ++..++..|++.|++++++..++
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NP   48 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNP   48 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecCh
Confidence            36899999995           78899999999999999998875

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=95.73  E-value=0.0032  Score=46.37  Aligned_cols=32  Identities=19%  Similarity=0.159  Sum_probs=30.4

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .|+|||+|.+|+-+|.+|++.|.+|+++.+.+
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999976

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.71  E-value=0.0038  Score=44.53  Aligned_cols=32  Identities=16%  Similarity=0.122  Sum_probs=30.2

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .|+|||+|+.|+.+|..+++.|.+|.++.+++
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            58999999999999999999999999999876

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.70  E-value=0.0039  Score=44.52  Aligned_cols=32  Identities=22%  Similarity=0.184  Sum_probs=30.1

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++|||+|+.|+..|..+.+.+.+|+++.+.+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            49999999999999999999999999999866

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.65  E-value=0.0062  Score=41.48  Aligned_cols=33  Identities=27%  Similarity=0.287  Sum_probs=29.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ..|+|+|+|+.|++++..+...|. +|+++|+++
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            469999999999999999999997 799999864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0043  Score=41.77  Aligned_cols=33  Identities=21%  Similarity=0.055  Sum_probs=31.4

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~  231 (259)
                      +|+|+|.|..|.-++..|++.|.+|+++.|++.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            699999999999999999999999999999983

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=95.61  E-value=0.0044  Score=45.67  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=30.9

Q ss_pred             CCeEEEEccCcCHHHHHHHHhc-ccCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAG-FAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~-~~~~v~~~~r~~  230 (259)
                      +..|+|||+|++|+.+|..|++ .|.+|+++.+++
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            4569999999999999999976 599999999987

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0034  Score=43.58  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=31.7

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++|+|||+|.+|..+|..++..|.+|+++.+.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            789999999999999999999999999999988

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.55  E-value=0.0078  Score=40.97  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=28.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ..|+|+|+|+.|++++..+...|. +|++.|.++
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            469999999999999999999998 577778764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.46  E-value=0.0079  Score=41.02  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=29.2

Q ss_pred             eEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      .|+|+|+|+.|+.++..+...|. +|+++|.++
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            59999999999999999999985 799999875

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0051  Score=43.49  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=29.7

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++|||+|+.|+++|..+.+.|.+|.++.+..
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            38999999999999999999999999998765

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.45  E-value=0.0079  Score=41.79  Aligned_cols=33  Identities=30%  Similarity=0.343  Sum_probs=28.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ..|+|+|+|+.|++++..+...|. +|+++|.++
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            479999999999999999888877 788888763

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.44  E-value=0.01  Score=38.77  Aligned_cols=31  Identities=29%  Similarity=0.444  Sum_probs=27.7

Q ss_pred             eEEEEC-CChHHHHHHHHHHHcCC--cEEEEeeC
Q 024975            4 HVAVIG-AGAAGLVVGHELLREGH--TVVVYEKG   34 (259)
Q Consensus         4 ~v~IIG-~G~~Gl~~a~~L~~~g~--~v~v~e~~   34 (259)
                      +|.||| +|..|.++|+.|...+.  +++++|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            799999 69999999999999876  79999863

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.0085  Score=43.29  Aligned_cols=32  Identities=19%  Similarity=0.367  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~   34 (259)
                      .+|+|||+|--|..+|..|.+.|. +++|+|.+
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            579999999999999999999998 89999985

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.014  Score=39.90  Aligned_cols=34  Identities=21%  Similarity=0.448  Sum_probs=30.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      .++|+|+|+|-+|-++++.|.+.|. ++.|+.|.+
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            3689999999999999999999987 788998864

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.35  E-value=0.012  Score=42.89  Aligned_cols=33  Identities=24%  Similarity=0.087  Sum_probs=30.7

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      -.++|||+|+.|+++|..+++.|.+|+++.+.+
T Consensus        43 yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          43 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            459999999999999999999999999999876

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.27  E-value=0.012  Score=39.02  Aligned_cols=33  Identities=21%  Similarity=0.455  Sum_probs=29.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcC-CcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~   35 (259)
                      .+|.+||+|.-|-+.|..|.+.| .++.++++++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            37999999999999999998887 8999999974

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.18  E-value=0.0035  Score=43.30  Aligned_cols=33  Identities=12%  Similarity=0.067  Sum_probs=31.4

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++|+|||+|.+|..+|..++..|.+|+++.+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            679999999999999999999999999999987

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.18  E-value=0.012  Score=43.44  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=32.1

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      +++|+|+|| |..|-.++.+|.+.|.+|++++|+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            578999998 99999999999999999999998643

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.17  E-value=0.011  Score=39.83  Aligned_cols=33  Identities=30%  Similarity=0.384  Sum_probs=29.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..|+|+|+|+.|++++..+...|.+|++++.++
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            468999999999999999999999999998753

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=95.15  E-value=0.016  Score=38.73  Aligned_cols=33  Identities=33%  Similarity=0.513  Sum_probs=29.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~   34 (259)
                      ..+|+|||+|-.|-.++..|...|. +++|+-|.
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            4689999999999999999999998 58888775

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=95.13  E-value=0.006  Score=45.54  Aligned_cols=32  Identities=13%  Similarity=0.221  Sum_probs=30.5

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .|+|||+|.+|+-.|..+++.|.+|.++++.+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            59999999999999999999999999999877

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.12  E-value=0.012  Score=39.95  Aligned_cols=34  Identities=29%  Similarity=0.354  Sum_probs=30.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .++|+|+|+|-++-++++.|.+.+.++.|+.|+.
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            3689999999999999999999888999998863

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.11  E-value=0.012  Score=39.05  Aligned_cols=33  Identities=15%  Similarity=0.298  Sum_probs=30.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|.|||+|--|.++|..|.+.+.++++++++.
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            369999999999999999999999999998863

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.07  E-value=0.0084  Score=42.39  Aligned_cols=32  Identities=19%  Similarity=0.156  Sum_probs=29.8

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++|||+|+.|+..|..+++.+.+|.++.+..
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            49999999999999999999999999998765

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.03  E-value=0.0086  Score=42.72  Aligned_cols=32  Identities=28%  Similarity=0.401  Sum_probs=30.0

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .|+|||+|+.|+.+|..+++.|.+|.++.+.+
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            59999999999999999999999999999765

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.016  Score=43.98  Aligned_cols=34  Identities=35%  Similarity=0.332  Sum_probs=31.7

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         1 ~~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      |.++|+|.|| |..|-.++.+|.+.|.+|+++|+.
T Consensus         1 M~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~   35 (346)
T d1ek6a_           1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF   35 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            7789999998 999999999999999999999863

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.96  E-value=0.015  Score=43.10  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=31.5

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      +.+|+|+|| |..|..++.+|.++|++|+++.|+..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            567999997 99999999999999999999988643

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.015  Score=38.75  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=31.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|+|-|..|-.+|..|+..|.+|+++|..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            689999999999999999999999999999975

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=94.85  E-value=0.0083  Score=45.12  Aligned_cols=33  Identities=18%  Similarity=0.238  Sum_probs=30.9

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      -.|+|||+|.+|+-+|..+++.|.+|.++++.+
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            459999999999999999999999999999876

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.82  E-value=0.014  Score=39.58  Aligned_cols=33  Identities=18%  Similarity=0.220  Sum_probs=28.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ..|+|+|+|+.|++++..+...|. +|+++|.++
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            359999999999999999999986 688888864

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=94.80  E-value=0.0095  Score=42.34  Aligned_cols=31  Identities=26%  Similarity=0.229  Sum_probs=28.9

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~  229 (259)
                      .|+|||+|+.|+|.|...++.+.++.++..+
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~   34 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQS   34 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEec
Confidence            4999999999999999999999999999865

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.64  E-value=0.024  Score=37.08  Aligned_cols=33  Identities=27%  Similarity=0.374  Sum_probs=26.6

Q ss_pred             CeEEEEC-CChHHHHHHHHHHH-cC--CcEEEEeeCC
Q 024975            3 RHVAVIG-AGAAGLVVGHELLR-EG--HTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG-~G~~Gl~~a~~L~~-~g--~~v~v~e~~~   35 (259)
                      .+|+||| +|..|.++|+.|.. .+  .++.++|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            4799999 59999999998864 33  4899999753

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.64  E-value=0.0092  Score=41.18  Aligned_cols=33  Identities=18%  Similarity=0.164  Sum_probs=30.6

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++|+|+|+|..|.-+|..|.+.+.+|+++.|.+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            579999999999999999999999999999876

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=94.63  E-value=0.012  Score=45.08  Aligned_cols=32  Identities=9%  Similarity=-0.017  Sum_probs=30.1

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .|+|||+|..|.-+|..|++.|.+|.++++..
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            48999999999999999999999999999964

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=94.59  E-value=0.01  Score=44.58  Aligned_cols=33  Identities=12%  Similarity=0.242  Sum_probs=30.9

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      -.|+|||+|.+|+-.|..+++.|.+|.++++.+
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            459999999999999999999999999999877

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.49  E-value=0.028  Score=42.81  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=30.7

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .++|+|.|| |..|..++.+|.++|++|+++|+..
T Consensus        15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          15 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            467999997 9999999999999999999998753

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.013  Score=41.25  Aligned_cols=33  Identities=21%  Similarity=0.232  Sum_probs=28.2

Q ss_pred             CeEEEEccCcCHHHHHHHHhccc--CeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFA--KEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~--~~v~~~~r~~  230 (259)
                      .+++|||+|+.|+++|..|.+.+  .+|+++.+.+
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~   39 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDP   39 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            56899999999999999997765  4699998765

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.49  E-value=0.02  Score=38.92  Aligned_cols=33  Identities=21%  Similarity=0.467  Sum_probs=28.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .++|+|+|+|-++-++++.|.+.+ ++.|+-|+.
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            468999999999999999998777 899998863

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.02  Score=38.67  Aligned_cols=37  Identities=22%  Similarity=0.223  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..++++|+|+|+|-+|--++..|.+.+.+|+++.|+.
T Consensus        15 ~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          15 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            3467999999999999999999999998999999987

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=94.41  E-value=0.013  Score=44.95  Aligned_cols=32  Identities=16%  Similarity=0.082  Sum_probs=29.9

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++|||+|..|.-+|..|++.|.+|.++++..
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            48999999999999999999999999999864

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.37  E-value=0.01  Score=38.29  Aligned_cols=33  Identities=21%  Similarity=0.196  Sum_probs=30.6

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |+++|+|.|..|..++..|.+.|.+|+++...+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            578999999999999999999999999998866

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=94.34  E-value=0.023  Score=37.65  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=31.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|+|=|..|-.+|.+|+..|.+|+|.|.+|
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            689999999999999999999999999999975

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=94.33  E-value=0.013  Score=44.14  Aligned_cols=32  Identities=16%  Similarity=0.018  Sum_probs=30.1

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .|+|||+|++|+-.|..+++.|.+|.++++.+
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            49999999999999999999999999999876

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=94.32  E-value=0.014  Score=44.53  Aligned_cols=32  Identities=22%  Similarity=0.306  Sum_probs=30.4

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++|||+|..|+-+|..|++.|.+|.++++.+
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~   37 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGE   37 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecCC
Confidence            59999999999999999999999999999876

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.30  E-value=0.014  Score=42.32  Aligned_cols=32  Identities=25%  Similarity=0.344  Sum_probs=29.8

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++|||+|+.|+.+|..+++.|.+|.++.+..
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            38999999999999999999999999999865

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.28  E-value=0.027  Score=38.14  Aligned_cols=32  Identities=22%  Similarity=0.221  Sum_probs=26.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEE-EEeeC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVV-VYEKG   34 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~-v~e~~   34 (259)
                      .+|+|+|+|+.|++++..+...|.+++ +.|.+
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~   62 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV   62 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence            469999999999999999988888654 55553

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=94.27  E-value=0.016  Score=43.92  Aligned_cols=32  Identities=25%  Similarity=0.302  Sum_probs=29.0

Q ss_pred             eEEEEccCcCHHHHHHHHh-----cccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLA-----GFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~-----~~~~~v~~~~r~~  230 (259)
                      .|+|||+|++|+=+|..|+     +.|.+|++++|++
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            5999999999999999996     4688999999987

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.26  E-value=0.038  Score=38.00  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=30.6

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+.++|.|| |-.|..+|..|.+.|.+|++++++.
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            367899995 8999999999999999999999974

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.22  E-value=0.0065  Score=41.63  Aligned_cols=38  Identities=24%  Similarity=0.268  Sum_probs=32.9

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCCCccccc
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHE  236 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~~~~~~  236 (259)
                      +|+|+|+|..|.-+|..|.+.+.+|+++.|..+++..+
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~   39 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILK   39 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHH
Confidence            68999999999999999999999999999876554443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.14  E-value=0.017  Score=37.16  Aligned_cols=32  Identities=13%  Similarity=0.250  Sum_probs=30.1

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|+|+|.|..|..++..|.+.+.+|+++.+.+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            68999999999999999999999999998876

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=94.07  E-value=0.034  Score=39.30  Aligned_cols=34  Identities=24%  Similarity=0.543  Sum_probs=30.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .++|+|||+|.+|+-+|..|.+.+.+++++=+..
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            3789999999999999999999999888877754

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=94.05  E-value=0.026  Score=37.63  Aligned_cols=36  Identities=22%  Similarity=0.409  Sum_probs=32.0

Q ss_pred             CCCCeEEEEccCcCHHHHHHHHhcccC-eEEEEecCC
Q 024975          195 FQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G~~a~e~a~~l~~~~~-~v~~~~r~~  230 (259)
                      ..+++++|||.|-+|..++..|...+. +++++.|+.
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            467999999999999999999998875 699999986

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=93.99  E-value=0.039  Score=41.71  Aligned_cols=34  Identities=29%  Similarity=0.188  Sum_probs=31.2

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .++|+|.|| |..|..++..|.+.|++|..+++..
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            478999996 9999999999999999999999864

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=93.98  E-value=0.034  Score=37.52  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=28.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ..|+|+|+|+.|++++..+...+. +|+++|+++
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            358999999999999999999876 688888764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.85  E-value=0.031  Score=37.66  Aligned_cols=33  Identities=27%  Similarity=0.336  Sum_probs=27.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ..|+|+|+|+.|+.++..+...|. .|+++|+++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            469999999999999999988875 677777763

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=93.82  E-value=0.037  Score=41.68  Aligned_cols=31  Identities=32%  Similarity=0.519  Sum_probs=28.9

Q ss_pred             eEEEECC-ChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            4 HVAVIGA-GAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         4 ~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      +|+|+|| |..|-.++..|.+.|.+|+++|+.
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            5999998 999999999999999999999873

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.77  E-value=0.036  Score=37.23  Aligned_cols=35  Identities=17%  Similarity=0.243  Sum_probs=31.5

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhccc-CeEEEEecCC
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSV  230 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~-~~v~~~~r~~  230 (259)
                      ++++|+|+|+|-+|--++..|.+.+ .+|+++.|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            4688999999999999999999888 5799999987

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.70  E-value=0.012  Score=37.57  Aligned_cols=36  Identities=8%  Similarity=0.072  Sum_probs=27.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHc-CCc-EEEEeeCCCc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLRE-GHT-VVVYEKGEQV   37 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~-g~~-v~v~e~~~~~   37 (259)
                      .++|+|+|||-+|.+++.++.+. +++ +..||.++..
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            46899999999999998877543 555 5566766554

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.59  E-value=0.063  Score=36.50  Aligned_cols=33  Identities=33%  Similarity=0.457  Sum_probs=30.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.|.|||.|..|-..|..|...|.+|..+|+.+
T Consensus        43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ceEEEeccccccccceeeeeccccccccccccc
Confidence            579999999999999999999999999999865

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.52  E-value=0.054  Score=37.94  Aligned_cols=33  Identities=36%  Similarity=0.406  Sum_probs=29.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      .+|++.|+|.+|+.+|..|.+.+. ++.++|+..
T Consensus        27 ~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~G   60 (222)
T d1vl6a1          27 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG   60 (222)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             cEEEEEChHHHHHHHHHHHHHhcccceEeeccee
Confidence            579999999999999999998876 788999863

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.49  E-value=0.02  Score=42.78  Aligned_cols=34  Identities=32%  Similarity=0.283  Sum_probs=30.5

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcc--cCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGF--AKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~--~~~v~~~~r~~  230 (259)
                      +..|+|||+|++|+..|..|.+.  +.+|+++.+++
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            46699999999999999999854  88999999987

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=93.49  E-value=0.028  Score=37.95  Aligned_cols=37  Identities=16%  Similarity=0.205  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..++++|+|+|+|-+|--++..|.+.+.+|+++.|+.
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            4467999999999999999998888888999999987

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.05  Score=40.46  Aligned_cols=32  Identities=25%  Similarity=0.525  Sum_probs=29.8

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCcEEEEee
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEK   33 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~   33 (259)
                      .++|+|.|| |..|-.++.+|.++|.+|+.+|+
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            378999998 99999999999999999999986

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.20  E-value=0.032  Score=35.60  Aligned_cols=33  Identities=36%  Similarity=0.461  Sum_probs=27.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV   37 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~~~   37 (259)
                      ++++|+|.|..|..++..|.  +.+++++|.++..
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~   33 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLAEDENV   33 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTTH
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchHH
Confidence            47999999999999999995  4578888887643

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.20  E-value=0.026  Score=37.78  Aligned_cols=32  Identities=19%  Similarity=0.105  Sum_probs=30.0

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|.|||.|..|--+|..|.+.|.+|+.+.|++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            68999999999999999999999999998876

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.17  E-value=0.051  Score=36.24  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=32.9

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++.+|+|+|+|..|...+....+.|..|+++..+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            45889999999999999999999999999999887

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=93.14  E-value=0.019  Score=43.32  Aligned_cols=32  Identities=13%  Similarity=0.240  Sum_probs=30.2

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .|+|||+|..|+-.|.++.+.|.+|+++++.+
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~   40 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF   40 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            49999999999999999999999999999877

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.13  E-value=0.055  Score=32.52  Aligned_cols=35  Identities=26%  Similarity=0.418  Sum_probs=30.4

Q ss_pred             CCeEEEECCChHHHHH-HHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAGAAGLVV-GHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~-a~~L~~~g~~v~v~e~~~~   36 (259)
                      .++|-+||-|=+|+++ |..|.++|++|.-.|....
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            4679999999999888 8889999999999998643

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.13  E-value=0.0058  Score=43.74  Aligned_cols=32  Identities=19%  Similarity=0.208  Sum_probs=26.8

Q ss_pred             eEEEEccCcCHHHHHHHHhcccC------eEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAK------EVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~------~v~~~~r~~  230 (259)
                      +|+|||+|.+|+-.|..|++.|.      +++++.+..
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~   39 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF   39 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCC
Confidence            69999999999999999999875      466666554

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.08  E-value=0.035  Score=40.42  Aligned_cols=33  Identities=18%  Similarity=0.308  Sum_probs=30.3

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++|+|.|| |..|-.++.+|.++|++|+.+++.+
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            46999998 9999999999999999999999864

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.02  E-value=0.032  Score=38.21  Aligned_cols=32  Identities=28%  Similarity=0.348  Sum_probs=29.6

Q ss_pred             eEEEE-ccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILI-GHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~vi-G~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|+|+ |.|..|.-+|..|++.|.+|++..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999 669999999999999999999999987

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.00  E-value=0.062  Score=35.74  Aligned_cols=33  Identities=12%  Similarity=0.105  Sum_probs=30.8

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++|.|||-|.+|.-+|..|.+.|.+|+++.|.+
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            469999999999999999999999999998886

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.99  E-value=0.057  Score=36.43  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=28.2

Q ss_pred             eEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      .|+|+|+|..|++++..++..|. +|+++|.++
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            59999999999999999999985 788888764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.92  E-value=0.025  Score=37.43  Aligned_cols=33  Identities=18%  Similarity=0.114  Sum_probs=26.3

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCC-------cEEEEeeC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGH-------TVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~-------~v~v~e~~   34 (259)
                      +.+|+|||| |..|.++|+.|...+.       ++.++|..
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~   43 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT   43 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc
Confidence            579999996 9999999999986532       46666664

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=92.91  E-value=0.037  Score=37.50  Aligned_cols=34  Identities=21%  Similarity=0.242  Sum_probs=31.9

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++|.|||-|.+|.-+|..|.+.|.+|+++.|++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            3679999999999999999999999999999988

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.88  E-value=0.07  Score=35.70  Aligned_cols=33  Identities=21%  Similarity=0.281  Sum_probs=28.2

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      ..|+|+|+ |+.|+.++..+...|. +|+++++++
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccch
Confidence            46999995 9999999999998884 888998864

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=92.87  E-value=0.041  Score=36.15  Aligned_cols=33  Identities=18%  Similarity=0.178  Sum_probs=31.4

Q ss_pred             CeEEEEc-cCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIG-HYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG-~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++|+||| .|.+|--+|..|.+.|.+|+++.|..
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            7899999 69999999999999999999999988

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.81  E-value=0.032  Score=42.93  Aligned_cols=33  Identities=18%  Similarity=0.287  Sum_probs=29.8

Q ss_pred             CeEEEEccCcCHHHHHHHHhc------ccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAG------FAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~------~~~~v~~~~r~~  230 (259)
                      -.|+|||+|++|.-+|..|++      .|.+|.+++|..
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            469999999999999999986      688999999987

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=92.77  E-value=0.089  Score=36.35  Aligned_cols=32  Identities=25%  Similarity=0.290  Sum_probs=30.2

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      +.|+|-|.|-.|..+|..|.+.|.+|++.|.+
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            67999999999999999999999999999875

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.77  E-value=0.074  Score=39.96  Aligned_cols=33  Identities=21%  Similarity=0.173  Sum_probs=30.1

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      ++.|+|.|| |..|-.++.+|.+.|.+|+.+|+.
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~   49 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF   49 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            468999898 999999999999999999999974

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.77  E-value=0.045  Score=42.74  Aligned_cols=33  Identities=30%  Similarity=0.379  Sum_probs=30.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~~   35 (259)
                      .+|+|||+|--|..+|..|...|+ +++|+|.+.
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            479999999999999999999998 899999863

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.71  E-value=0.056  Score=36.59  Aligned_cols=35  Identities=23%  Similarity=0.351  Sum_probs=30.6

Q ss_pred             CCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..+++|+|+|+|-+|--++..|.+.+ +|+++.|+.
T Consensus        16 ~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          16 VKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            46799999999999998888887766 899999986

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=92.70  E-value=0.038  Score=42.17  Aligned_cols=32  Identities=22%  Similarity=0.254  Sum_probs=30.2

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++|||+|..|+-+|..|++.+.+|.++++.+
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            48999999999999999999999999999986

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.64  E-value=0.067  Score=36.65  Aligned_cols=38  Identities=18%  Similarity=0.286  Sum_probs=34.3

Q ss_pred             CCCCCCeEEEEc-cCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          193 NPFQDQVVILIG-HYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       193 ~~~~~~~v~viG-~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ....+|+++|.| +|-.|..++..|.+.|.+|+++.|+.
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            355789999999 58999999999999999999999987

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=92.63  E-value=0.089  Score=39.67  Aligned_cols=34  Identities=26%  Similarity=0.294  Sum_probs=31.0

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+.|+|+|| |..|-.++..|.++|++|.++-|+.
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            578999997 9999999999999999999998753

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=92.61  E-value=0.061  Score=36.40  Aligned_cols=35  Identities=14%  Similarity=0.132  Sum_probs=32.8

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++.+|+|+|+|..|...+....+.|..|+++..++
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            45889999999999999999999999999999888

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=92.55  E-value=0.061  Score=40.58  Aligned_cols=33  Identities=27%  Similarity=0.417  Sum_probs=27.9

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcCCc--EEEEee
Q 024975            1 MFRHVAVIGA-GAAGLVVGHELLREGHT--VVVYEK   33 (259)
Q Consensus         1 ~~~~v~IIG~-G~~Gl~~a~~L~~~g~~--v~v~e~   33 (259)
                      +|++|+|.|| |..|-.++.+|.+.|.+  ++++|+
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~   36 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK   36 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeC
Confidence            4789999996 99999999999999875  555554

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.54  E-value=0.056  Score=35.93  Aligned_cols=32  Identities=19%  Similarity=0.203  Sum_probs=30.2

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|.|||-|.+|.-+|..|++.|.+|+++.|++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            58999999999999999999999999998887

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.43  E-value=0.062  Score=30.78  Aligned_cols=33  Identities=12%  Similarity=0.101  Sum_probs=31.0

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++|.|+|+|.-|--++.+..+.|.+++++...+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            579999999999999999999999999999877

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.39  E-value=0.096  Score=38.84  Aligned_cols=33  Identities=27%  Similarity=0.320  Sum_probs=30.3

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++|+|.|| |..|-.++.+|.++|++|..+++..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            47999998 9999999999999999999999864

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=92.35  E-value=0.086  Score=39.73  Aligned_cols=37  Identities=22%  Similarity=0.127  Sum_probs=33.3

Q ss_pred             CCCCeEEEEcc-CcCHHHHHHHHhcccCeEEEEecCCC
Q 024975          195 FQDQVVILIGH-YASGLDIKRDLAGFAKEVHIASRSVA  231 (259)
Q Consensus       195 ~~~~~v~viG~-G~~a~e~a~~l~~~~~~v~~~~r~~~  231 (259)
                      +++++|+|.|+ |+.|..++..|.+.|.+|..+.|..+
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            35799999995 89999999999999999999999873

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=92.27  E-value=0.13  Score=35.46  Aligned_cols=33  Identities=27%  Similarity=0.384  Sum_probs=30.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.|.|||.|-.|-.+|..|...|.+|+.+|+..
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eeeeeeecccccccccccccccceeeeccCCcc
Confidence            579999999999999999999999999999864

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.21  E-value=0.085  Score=40.49  Aligned_cols=30  Identities=27%  Similarity=0.440  Sum_probs=28.5

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEe
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYE   32 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e   32 (259)
                      ++|+|.|| |.-|..++.+|.+.|++|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            57999998 9999999999999999999998

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.09  E-value=0.06  Score=37.27  Aligned_cols=34  Identities=18%  Similarity=0.199  Sum_probs=31.4

Q ss_pred             CCeEEEEcc-CcCHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGH-YASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~-G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      -++|+|+|+ |..|-.++..|++.|.+|+.+.|++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            378999995 9999999999999999999999987

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.03  E-value=0.052  Score=38.51  Aligned_cols=32  Identities=13%  Similarity=0.154  Sum_probs=26.6

Q ss_pred             eEEEEccCcCHHHHHHHHhccc---CeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFA---KEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~---~~v~~~~r~~  230 (259)
                      +|+|||+|+.|+..|...++++   ..|.++.+..
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            6999999999999888776654   5699999765

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=92.01  E-value=0.13  Score=35.34  Aligned_cols=33  Identities=27%  Similarity=0.372  Sum_probs=30.5

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.|.|||.|..|-.+|..|...|.+|+.+|+..
T Consensus        44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~   76 (197)
T d1j4aa1          44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR   76 (197)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CeEEEecccccchhHHHhHhhhcccccccCccc
Confidence            579999999999999999999999999999864

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.99  E-value=0.14  Score=30.13  Aligned_cols=29  Identities=24%  Similarity=0.534  Sum_probs=26.1

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEE
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVY   31 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~   31 (259)
                      ++|+|||+|-.--++|..|.+...++.++
T Consensus         1 MkVLviGsGgREHAia~~l~~s~~~v~~~   29 (90)
T d1vkza2           1 VRVHILGSGGREHAIGWAFAKQGYEVHFY   29 (90)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCeEEEe
Confidence            48999999999999999999988777776

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.95  E-value=0.087  Score=32.84  Aligned_cols=34  Identities=9%  Similarity=0.069  Sum_probs=29.3

Q ss_pred             CCeEEEEccCc-----------CHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGHYA-----------SGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~-----------~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++|+|+|+|+           ++..++.+|.+.|.++.++...|
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NP   48 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNP   48 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecCh
Confidence            47899999984           56688888999999999998888

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.89  E-value=0.096  Score=35.16  Aligned_cols=33  Identities=27%  Similarity=0.267  Sum_probs=28.4

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..|+|+|| |+.|+++...+...|.+|++++.++
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEEeccccccccccccccccCcccccccccc
Confidence            46999996 9999999999988999999888653

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.87  E-value=0.12  Score=32.60  Aligned_cols=36  Identities=14%  Similarity=0.114  Sum_probs=30.1

Q ss_pred             CCCCeEEEEccCc-----------CHHHHHHHHhcccCeEEEEecCC
Q 024975          195 FQDQVVILIGHYA-----------SGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G~-----------~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ...++|+|+|+|+           ++..++.+|.+.|.++.++...|
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP   51 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNP   51 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCT
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCch
Confidence            3458899999986           46678888999999999998888

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=91.82  E-value=0.09  Score=38.60  Aligned_cols=33  Identities=15%  Similarity=0.145  Sum_probs=30.7

Q ss_pred             CeEEEEcc-CcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGH-YASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~-G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++|+|.|+ |..|-.++..|.+.|.+|+.+.|++
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            56999997 9999999999999999999999987

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=91.46  E-value=0.12  Score=35.02  Aligned_cols=37  Identities=19%  Similarity=0.217  Sum_probs=31.7

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhccc-CeEEEEecCC
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~-~~v~~~~r~~  230 (259)
                      +..+++|+|+|+|-+|--++..|.+.+ ..|+++.|++
T Consensus        15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            346799999999999998888888776 4799999987

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.42  E-value=0.23  Score=30.57  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=31.7

Q ss_pred             CCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..+|.|+|+|.-|.-++.+..+.|.++.++.+.+
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~   44 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYA   44 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            3679999999999999999999999999999887

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.40  E-value=0.1  Score=35.01  Aligned_cols=32  Identities=25%  Similarity=0.288  Sum_probs=26.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~   34 (259)
                      ..|+|+|+|..|++++..+...|. .|++.+.+
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~   62 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN   62 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CEEEEecchhHHHHHHHHHHHHhcCceEEEccc
Confidence            358999999999999999999996 56666654

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.39  E-value=0.13  Score=38.39  Aligned_cols=33  Identities=21%  Similarity=0.246  Sum_probs=29.9

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|.|| |..|..++.+|.+.|++|+.+++..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            56888888 9999999999999999999999853

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.24  E-value=0.11  Score=36.02  Aligned_cols=33  Identities=24%  Similarity=0.322  Sum_probs=27.5

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcCC--cEEEEee
Q 024975            1 MFRHVAVIGA-GAAGLVVGHELLREGH--TVVVYEK   33 (259)
Q Consensus         1 ~~~~v~IIG~-G~~Gl~~a~~L~~~g~--~v~v~e~   33 (259)
                      ++++|+|+|| |..|-.++.+|.+.+.  +|+.+-|
T Consensus         1 t~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r   36 (212)
T d2a35a1           1 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPAR   36 (212)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeC
Confidence            5789999999 9999999999999987  4544443

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=91.23  E-value=0.1  Score=38.08  Aligned_cols=33  Identities=15%  Similarity=0.240  Sum_probs=31.1

Q ss_pred             CeEEEEcc-CcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGH-YASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~-G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++|+|.|+ |..|-.++..|.+.|.+|+.+.|.+
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            78999997 9999999999999999999999987

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=91.21  E-value=0.15  Score=36.97  Aligned_cols=35  Identities=11%  Similarity=0.190  Sum_probs=29.3

Q ss_pred             CCeEEEECC-C--hHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGA-G--AAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~-G--~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .+.++|.|| |  =.|.++|..|++.|.+|++.++++.
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467899996 3  2699999999999999999998754

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.14  E-value=0.14  Score=36.26  Aligned_cols=33  Identities=27%  Similarity=0.338  Sum_probs=29.1

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|+|.|| +-.|.++|..|.+.|.+|+++|++.
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~   36 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSA   36 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            57999998 5668899999999999999999975

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.09  E-value=0.15  Score=38.21  Aligned_cols=33  Identities=27%  Similarity=0.365  Sum_probs=29.5

Q ss_pred             CeE-EEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHV-AVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v-~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++| +|.|| |..|-.++.+|.++|++|+.+++..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            468 78888 8999999999999999999999854

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=91.00  E-value=0.06  Score=40.65  Aligned_cols=35  Identities=17%  Similarity=0.273  Sum_probs=32.1

Q ss_pred             CCeEEEEcc-CcCHHHHHHHHhcccCeEEEEecCCC
Q 024975          197 DQVVILIGH-YASGLDIKRDLAGFAKEVHIASRSVA  231 (259)
Q Consensus       197 ~~~v~viG~-G~~a~e~a~~l~~~~~~v~~~~r~~~  231 (259)
                      .|+|+|+|+ |..|-.++..|++.|.+|+.+.|.+.
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~   38 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLK   38 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSC
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            478999997 99999999999999999999999874

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.99  E-value=0.18  Score=36.07  Aligned_cols=34  Identities=18%  Similarity=0.302  Sum_probs=27.5

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |+=|+|.|| +--|.++|..|++.|.+|+++++++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            345677786 4578999999999999999999864

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.97  E-value=0.14  Score=34.63  Aligned_cols=36  Identities=25%  Similarity=0.282  Sum_probs=33.7

Q ss_pred             CCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..++++.|+|.|.+|-.++..+...|.+|..+.|.+
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccCceEEEeccccccccceeeeeccccccccccccc
Confidence            567999999999999999999999999999999887

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.96  E-value=0.39  Score=30.97  Aligned_cols=43  Identities=26%  Similarity=0.306  Sum_probs=32.9

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcC---CcEEEEeeCCCcCceeee
Q 024975            1 MFRHVAVIGA-GAAGLVVGHELLREG---HTVVVYEKGEQVGGSWIY   43 (259)
Q Consensus         1 ~~~~v~IIG~-G~~Gl~~a~~L~~~g---~~v~v~e~~~~~gg~~~~   43 (259)
                      ++.+|+|||| |..|..+...|.+++   .++..+-.....|-....
T Consensus         1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~   47 (144)
T d2hjsa1           1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGF   47 (144)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceee
Confidence            3578999999 999999999998654   478877776666655443

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.94  E-value=0.12  Score=36.32  Aligned_cols=31  Identities=29%  Similarity=0.365  Sum_probs=27.2

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCcEEEEe
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYE   32 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e   32 (259)
                      |+.|+|.|| |..|..++..|.++|.++.+++
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            688999996 9999999999999998766654

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.93  E-value=0.19  Score=35.56  Aligned_cols=34  Identities=26%  Similarity=0.218  Sum_probs=29.8

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+.|+|.|| |--|.++|..|.++|.+|+++|+..
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            478999999 5579999999999999999998864

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.78  E-value=0.14  Score=34.21  Aligned_cols=32  Identities=31%  Similarity=0.365  Sum_probs=29.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEee
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK   33 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~   33 (259)
                      .+.|+|||=|.-|-+=|..|+..|++|+|==|
T Consensus        16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr   47 (182)
T d1np3a2          16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLR   47 (182)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcC
Confidence            46899999999999999999999999998544

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=90.73  E-value=0.15  Score=38.53  Aligned_cols=33  Identities=21%  Similarity=0.323  Sum_probs=28.1

Q ss_pred             CeEEEEC-CChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIG-AGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG-~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|.| +|..|..++.+|.+.|.+|+.+++..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4566889 49999999999999999999999853

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.71  E-value=0.12  Score=34.68  Aligned_cols=33  Identities=24%  Similarity=0.175  Sum_probs=28.0

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..|+|.|| |+.|+++...+...|.+|+.+++++
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CEEEEEeccccchhhhhhhhcccccccccccccc
Confidence            35888896 9999999998888999999988753

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.67  E-value=0.13  Score=34.34  Aligned_cols=38  Identities=18%  Similarity=-0.010  Sum_probs=32.0

Q ss_pred             CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          193 NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       193 ~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ...++++|+|+|+|..|.=.+..+...|.+|+.+.+++
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence            34578999999999999887777777788999999987

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.56  E-value=0.2  Score=35.20  Aligned_cols=34  Identities=29%  Similarity=0.514  Sum_probs=30.1

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCC--cEEEEeeCC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGH--TVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~--~v~v~e~~~   35 (259)
                      .++|+|.|| |..|-.++.+|.+.|.  +|.++.|++
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~   50 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK   50 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecCh
Confidence            467999999 9999999999999885  899998864

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=90.55  E-value=0.18  Score=34.49  Aligned_cols=33  Identities=24%  Similarity=0.366  Sum_probs=30.5

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+.|||.|..|-.+|..|...|.+|..+|+..
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             ceEEEeccccccccceeeeeccccceeeccCcc
Confidence            579999999999999999999999999999864

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.48  E-value=0.078  Score=38.81  Aligned_cols=33  Identities=21%  Similarity=0.439  Sum_probs=27.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHc----CC-------cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE----GH-------TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~----g~-------~v~v~e~~~   35 (259)
                      .+|||.|+|.+|+.+|..|...    |.       ++.++|+..
T Consensus        26 ~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~G   69 (294)
T d1pj3a1          26 HKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYG   69 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTE
T ss_pred             cEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCC
Confidence            4799999999999999997664    33       699999964

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=90.44  E-value=0.17  Score=37.53  Aligned_cols=32  Identities=19%  Similarity=0.366  Sum_probs=28.8

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      .+|+|.|| |..|-.++..|.++|++|+.+|+-
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~   33 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            37899988 999999999999999999999863

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=90.27  E-value=0.11  Score=39.92  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=30.0

Q ss_pred             CeEEEEccCcCHHHHHHHHhccc-CeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFA-KEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~-~~v~~~~r~~  230 (259)
                      -.++|||+|.+|+-+|..|++.+ .+|.++++.+
T Consensus        25 yD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             eeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            35999999999999999999987 5899999997

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.25  E-value=0.11  Score=41.59  Aligned_cols=32  Identities=25%  Similarity=0.386  Sum_probs=29.7

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCC-cEEEEeeC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~-~v~v~e~~   34 (259)
                      .+|+|||+|..|..+|..|...|+ +++|+|.+
T Consensus        26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d   58 (529)
T d1yova1          26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGN   58 (529)
T ss_dssp             CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            579999999999999999999997 79999885

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=90.08  E-value=0.21  Score=37.30  Aligned_cols=31  Identities=32%  Similarity=0.456  Sum_probs=28.1

Q ss_pred             eEEEECC-ChHHHHHHHHHHHcC-CcEEEEeeC
Q 024975            4 HVAVIGA-GAAGLVVGHELLREG-HTVVVYEKG   34 (259)
Q Consensus         4 ~v~IIG~-G~~Gl~~a~~L~~~g-~~v~v~e~~   34 (259)
                      +|+|.|| |..|-.++.+|.+.| .+|..+|+.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~   34 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIG   34 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            6999999 999999999999998 589999875

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=90.08  E-value=0.19  Score=36.16  Aligned_cols=34  Identities=12%  Similarity=0.145  Sum_probs=27.7

Q ss_pred             CCeEEEECC-Ch--HHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGA-GA--AGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~-G~--~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+.++|.|| |-  .|.++|..|++.|.+|++.+++.
T Consensus         6 gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           6 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            367889985 44  58888999999999999988753

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=89.98  E-value=0.19  Score=33.60  Aligned_cols=34  Identities=29%  Similarity=0.429  Sum_probs=24.9

Q ss_pred             CCeEEEECCChHHHHHHHH--HHHc----CCcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGHE--LLRE----GHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~--L~~~----g~~v~v~e~~~   35 (259)
                      ..+|+|||||-.|.+++..  |.+.    +.+++++|.++
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~   41 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE   41 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCc
Confidence            3689999999999775542  3332    35899999974

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.97  E-value=0.2  Score=35.92  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=28.0

Q ss_pred             CeEEEECCC---hHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            3 RHVAVIGAG---AAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G---~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      +.++|.||+   =-|.++|.+|++.|.+|++.++++.
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            568888863   2599999999999999999888643

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=89.95  E-value=0.026  Score=37.22  Aligned_cols=32  Identities=19%  Similarity=0.191  Sum_probs=28.3

Q ss_pred             eEEEEccCcCHHHHHHHHhccc-CeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFA-KEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~-~~v~~~~r~~  230 (259)
                      +|.+||.|..|--++..|.+.+ .+|.+..|++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            5899999999999999988776 7898888877

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=89.92  E-value=0.18  Score=36.26  Aligned_cols=33  Identities=21%  Similarity=0.373  Sum_probs=27.8

Q ss_pred             CeEEEECCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~-~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|.||+- -|.++|..|++.|.+|++.+++.
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   43 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA   43 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5577778743 68899999999999999999975

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.88  E-value=0.11  Score=34.09  Aligned_cols=32  Identities=19%  Similarity=0.073  Sum_probs=29.7

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|.|||.|..|.-+|..|.+.+-+|++..|++
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            68999999999999999999999999888777

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=89.87  E-value=0.21  Score=35.74  Aligned_cols=36  Identities=14%  Similarity=0.302  Sum_probs=28.9

Q ss_pred             CCeEEEECCCh---HHHHHHHHHHHcCCcEEEEeeCCCc
Q 024975            2 FRHVAVIGAGA---AGLVVGHELLREGHTVVVYEKGEQV   37 (259)
Q Consensus         2 ~~~v~IIG~G~---~Gl~~a~~L~~~g~~v~v~e~~~~~   37 (259)
                      .+.++|.||+-   -|.++|..|.+.|.+|++.++++..
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~   43 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL   43 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTT
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            35678888743   4788999999999999999997543

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=89.83  E-value=0.1  Score=38.35  Aligned_cols=33  Identities=18%  Similarity=0.331  Sum_probs=27.6

Q ss_pred             CeEEEECCChHHHHHHHHHHHc----CC-------cEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE----GH-------TVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~----g~-------~v~v~e~~~   35 (259)
                      .+|+|.|+|.+|+.+|..|.+.    |.       ++.++|+..
T Consensus        26 ~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~G   69 (308)
T d1o0sa1          26 EKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDG   69 (308)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTE
T ss_pred             cEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCC
Confidence            4799999999999999998764    32       699999964

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=89.78  E-value=0.26  Score=33.50  Aligned_cols=33  Identities=24%  Similarity=0.275  Sum_probs=30.5

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..+.|||.|..|..+|..|...|.+|..+|+..
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1          45 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             cceeeccccccchhhhhhhhccCceEEEEeecc
Confidence            579999999999999999999999999999864

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.75  E-value=0.32  Score=33.03  Aligned_cols=33  Identities=24%  Similarity=0.371  Sum_probs=30.5

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..|.|||.|..|-.+|..|...|.+|..+|+..
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d1sc6a1          45 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN   77 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eEEEEeecccchhhhhhhcccccceEeeccccc
Confidence            579999999999999999999999999999854

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=89.73  E-value=0.15  Score=38.58  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=28.7

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++|||+|..|+-+|..|++. .+|.++++.+
T Consensus        28 D~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          28 DYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             EEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             cEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            689999999999999999886 7899999997

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=89.72  E-value=0.083  Score=35.65  Aligned_cols=32  Identities=19%  Similarity=0.202  Sum_probs=29.8

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|.|||.|..|.-+|+.|.+.+.+|++..|.+
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            58999999999999999999999999988876

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=89.69  E-value=0.15  Score=37.64  Aligned_cols=35  Identities=20%  Similarity=0.385  Sum_probs=30.9

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      +++|+|.|| |.-|-.++.+|.+.|..+++++....
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~   37 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE   37 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh
Confidence            468999999 99999999999999999988876544

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.68  E-value=0.1  Score=34.69  Aligned_cols=33  Identities=27%  Similarity=0.279  Sum_probs=23.5

Q ss_pred             CeEEEECCChHHHHHHHHHH-H-c----CCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELL-R-E----GHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~-~-~----g~~v~v~e~~~   35 (259)
                      .+|+|||||-.|.+.+.... + .    .-++.++|.++
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~   39 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDE   39 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCc
Confidence            37999999987776665432 2 2    24899999864

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=89.66  E-value=0.17  Score=33.10  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=30.4

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+++|+|.|..|..++..|.+.+.+|+++...+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            579999999999999999999999999998766

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=89.66  E-value=0.24  Score=33.25  Aligned_cols=32  Identities=19%  Similarity=0.151  Sum_probs=25.2

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCC-------cEEEEeeC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGH-------TVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~-------~v~v~e~~   34 (259)
                      -+|+|+|| |..|-++++.|++...       .+.++|..
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~   64 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSE   64 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCc
Confidence            37999996 9999999999987532       56666663

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.60  E-value=0.11  Score=39.16  Aligned_cols=33  Identities=18%  Similarity=0.175  Sum_probs=27.3

Q ss_pred             CeEEEEccCcCHHHHHHHHh----cccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLA----GFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~----~~~~~v~~~~r~~  230 (259)
                      -.|+|||+|.+|+-.|..++    +.|.+|.++++.+
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~   58 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   58 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence            45999999999988777775    4678999999876

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.58  E-value=0.23  Score=35.53  Aligned_cols=33  Identities=27%  Similarity=0.573  Sum_probs=26.4

Q ss_pred             CeE-EEECCC-hHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHV-AVIGAG-AAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v-~IIG~G-~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ++| +|.||+ =-|.++|..|++.|.+|++.++++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            466 555764 478899999999999999999864

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=89.50  E-value=0.11  Score=36.70  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=27.9

Q ss_pred             CeEEEEccCcCHHHHHHHHhccc-CeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFA-KEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~-~~v~~~~r~~  230 (259)
                      -.++|||+|+.|+.+|..+++.+ +.|.++.+..
T Consensus         4 YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~   37 (240)
T d1feca1           4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK   37 (240)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCS
T ss_pred             cCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEec
Confidence            35999999999999999999987 4688887655

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=89.48  E-value=0.11  Score=38.32  Aligned_cols=32  Identities=31%  Similarity=0.376  Sum_probs=28.1

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      -.|+|||+|..|+=.|..+.+.+ +|.+++..+
T Consensus         8 ~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~   39 (305)
T d1chua2           8 CDVLIIGSGAAGLSLALRLADQH-QVIVLSKGP   39 (305)
T ss_dssp             CSEEEECCSHHHHHHHHHHTTTS-CEEEECSSC
T ss_pred             CCEEEECccHHHHHHHHHhhcCC-CEEEEECCC
Confidence            45999999999999999888877 899998876

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.42  E-value=0.11  Score=34.19  Aligned_cols=24  Identities=29%  Similarity=0.324  Sum_probs=21.2

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGH   26 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~   26 (259)
                      .+|+|||| |..|.++|+.|...++
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccc
Confidence            48999997 9999999999998753

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.40  E-value=0.24  Score=37.08  Aligned_cols=31  Identities=32%  Similarity=0.406  Sum_probs=27.7

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEee
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEK   33 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~   33 (259)
                      +-|+|.|| |.-|-.++.+|.+.|++|+++|+
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            34778887 89999999999999999999986

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=89.27  E-value=0.15  Score=33.88  Aligned_cols=37  Identities=22%  Similarity=0.141  Sum_probs=32.1

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..++++|+|+|+|..|.=.+..+...|.+|+.+.+++
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            3467899999999999998888888888999998887

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=89.06  E-value=0.27  Score=36.81  Aligned_cols=32  Identities=31%  Similarity=0.288  Sum_probs=28.7

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      +.|+|.|| |..|..++.+|.++|++|..+.++
T Consensus        12 k~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~   44 (342)
T d1y1pa1          12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            57999998 999999999999999999887664

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.98  E-value=0.23  Score=35.22  Aligned_cols=35  Identities=34%  Similarity=0.584  Sum_probs=28.9

Q ss_pred             CCeEEEECCC-hHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIGAG-AAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~G-~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      .+.++|.||+ -.|.++|..|.+.|.+|++.+++..
T Consensus         7 gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            4567888874 4788999999999999999999753

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.81  E-value=0.24  Score=34.09  Aligned_cols=32  Identities=19%  Similarity=0.013  Sum_probs=29.2

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +|.|||.|+.|.=+|..|++.|.+|+.+...+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            58999999999999999999999999988654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.75  E-value=0.18  Score=32.99  Aligned_cols=32  Identities=22%  Similarity=0.201  Sum_probs=29.5

Q ss_pred             eEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++.|||.|..|.-++..|.+.+.+|++..|++
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            58999999999999999999999999998876

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=88.64  E-value=0.19  Score=36.75  Aligned_cols=33  Identities=21%  Similarity=0.342  Sum_probs=27.8

Q ss_pred             CeEEEECCChHHHHHHHHHHHc----C-------CcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLRE----G-------HTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~----g-------~~v~v~e~~~   35 (259)
                      .+|||.|+|.+|+.+|..|...    |       .++.++|+..
T Consensus        26 ~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kG   69 (298)
T d1gq2a1          26 HTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKG   69 (298)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTE
T ss_pred             cEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCC
Confidence            5799999999999999998753    3       3799999974

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.54  E-value=0.23  Score=32.87  Aligned_cols=37  Identities=14%  Similarity=-0.058  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..++++|+|+|+|..|.=.+..+...|.+|..+.+++
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            3467899999999999988888877788999998887

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=88.53  E-value=0.24  Score=33.67  Aligned_cols=39  Identities=23%  Similarity=0.251  Sum_probs=34.6

Q ss_pred             CCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          192 PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       192 ~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .....++++.|+|.|.+|.+++..+...+.+|....|..
T Consensus        39 ~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1          39 AYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             ceeccccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence            345568999999999999999999999999999998865

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.51  E-value=0.38  Score=34.14  Aligned_cols=33  Identities=30%  Similarity=0.337  Sum_probs=27.7

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|.|| +--|.++|..|++.|.+|++.+++.
T Consensus         8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            56888888 4468889999999999999999863

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.49  E-value=0.22  Score=35.01  Aligned_cols=35  Identities=17%  Similarity=0.310  Sum_probs=31.1

Q ss_pred             CCCeEEEEcc-CcCHHHHHHHHhcccC--eEEEEecCC
Q 024975          196 QDQVVILIGH-YASGLDIKRDLAGFAK--EVHIASRSV  230 (259)
Q Consensus       196 ~~~~v~viG~-G~~a~e~a~~l~~~~~--~v~~~~r~~  230 (259)
                      .+++|+|.|+ |..|-.++..|.+.+.  +|+.+.|++
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~   50 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK   50 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecCh
Confidence            4578999998 9999999999988874  799999988

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=88.45  E-value=0.18  Score=38.64  Aligned_cols=32  Identities=19%  Similarity=0.153  Sum_probs=29.2

Q ss_pred             eEEEEccCcCHHHHHHHHhccc-CeEEEEecCC
Q 024975          199 VVILIGHYASGLDIKRDLAGFA-KEVHIASRSV  230 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~-~~v~~~~r~~  230 (259)
                      .++|||+|.+|+=+|..|++.+ .+|.++++.+
T Consensus        19 D~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          19 DYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            5899999999999999999876 5899999986

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=88.38  E-value=0.29  Score=33.57  Aligned_cols=38  Identities=18%  Similarity=0.145  Sum_probs=34.1

Q ss_pred             CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          193 NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       193 ~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ....++++.|+|.|.+|-.+|..+...|.+|....|..
T Consensus        41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccccceeeeeeecccccccccccccccceeeeccCCcc
Confidence            34567999999999999999999999999999998876

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=88.30  E-value=0.31  Score=34.90  Aligned_cols=37  Identities=22%  Similarity=0.326  Sum_probs=30.8

Q ss_pred             CCCCeEEEEccCc-CHHHHHHHHhcccCeEEEEecCCC
Q 024975          195 FQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSVA  231 (259)
Q Consensus       195 ~~~~~v~viG~G~-~a~e~a~~l~~~~~~v~~~~r~~~  231 (259)
                      +.+|.++|.|++- .|.++|..|++.|.+|.++.|+.+
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~   40 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            4678888888753 777999999999999999988874

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=88.25  E-value=0.4  Score=31.34  Aligned_cols=39  Identities=28%  Similarity=0.302  Sum_probs=28.8

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCC---cEEEEeeCCCcCcee
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGH---TVVVYEKGEQVGGSW   41 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~---~v~v~e~~~~~gg~~   41 (259)
                      |+|+|||| |..|..+...|.++.+   ++..+......|-..
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~   44 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSL   44 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccc
Confidence            78999999 9999999998888753   555555544444333

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=88.20  E-value=0.42  Score=32.58  Aligned_cols=39  Identities=13%  Similarity=0.133  Sum_probs=34.7

Q ss_pred             CCCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          192 PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       192 ~~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .....++++.|||.|.+|-.+|..+...|.+|....|..
T Consensus        44 ~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          44 AARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             ceeeeCceEEEeccccccccceeeeeccccceeeccCcc
Confidence            345678999999999999999999999999999988876

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=88.19  E-value=0.34  Score=35.35  Aligned_cols=32  Identities=19%  Similarity=0.252  Sum_probs=27.8

Q ss_pred             CeEEEECCC---hHHHHHHHHHHHcCCcEEEEeeC
Q 024975            3 RHVAVIGAG---AAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~G---~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      +.++|.||+   =.|.++|..|++.|.+|++.++.
T Consensus         9 K~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           9 KRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            678999975   36999999999999999999875

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=88.17  E-value=0.37  Score=34.18  Aligned_cols=33  Identities=24%  Similarity=0.330  Sum_probs=27.7

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|.|| +=-|.++|..|.+.|.+|++.+++.
T Consensus         6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            55777787 4479999999999999999999863

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.06  E-value=0.23  Score=32.83  Aligned_cols=37  Identities=22%  Similarity=0.279  Sum_probs=34.5

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ...+|+++|+|-|..|--+|..+...|.+|++....|
T Consensus        21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            4568999999999999999999999999999999988

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=88.01  E-value=0.33  Score=36.28  Aligned_cols=39  Identities=15%  Similarity=0.112  Sum_probs=33.0

Q ss_pred             CCCCCCCeEEEEcc-CcCHHHHHHHHhcccCeEEEEecCC
Q 024975          192 PNPFQDQVVILIGH-YASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       192 ~~~~~~~~v~viG~-G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +...++++|+|.|+ |+.|..++..|.+.|.+|..+.|+.
T Consensus         6 ~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~   45 (342)
T d1y1pa1           6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSA   45 (342)
T ss_dssp             CSSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCc
Confidence            33345799999998 8899999999999999999888864

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.98  E-value=0.41  Score=32.35  Aligned_cols=33  Identities=30%  Similarity=0.482  Sum_probs=30.4

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.+.|||.|..|-.+|..|...|.+|+.+|+..
T Consensus        45 k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~   77 (184)
T d1ygya1          45 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV   77 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             eeeeeccccchhHHHHHHhhhccceEEeecCCC
Confidence            579999999999999999999999999999864

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.94  E-value=0.44  Score=33.53  Aligned_cols=34  Identities=29%  Similarity=0.385  Sum_probs=28.9

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+.++|.|| +=-|.++|..|++.|.+|++.++++
T Consensus         4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            467889997 4478889999999999999999974

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=87.89  E-value=0.4  Score=34.96  Aligned_cols=33  Identities=15%  Similarity=0.141  Sum_probs=27.4

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|.|| |-.|.++|..|++.|.+|++.+++.
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            44666664 6678999999999999999999874

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=87.88  E-value=0.38  Score=34.51  Aligned_cols=33  Identities=27%  Similarity=0.479  Sum_probs=27.3

Q ss_pred             CeEEEECCC-hHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAG-AAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G-~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +-++|.||+ -.|.++|..|++.|.+|++++++.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            557777873 468889999999999999999863

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.85  E-value=0.4  Score=33.69  Aligned_cols=34  Identities=26%  Similarity=0.335  Sum_probs=27.7

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      +.++|.|| +--|.++|..|++.|.+|++.+++..
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            45677777 55688999999999999999998753

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=87.79  E-value=0.44  Score=34.11  Aligned_cols=34  Identities=24%  Similarity=0.252  Sum_probs=28.6

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+.++|.|| +=-|.++|..|++.|.+|++.++++
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            356889996 4468899999999999999999964

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=87.61  E-value=0.37  Score=34.72  Aligned_cols=36  Identities=6%  Similarity=0.078  Sum_probs=31.4

Q ss_pred             CCCCeEEEEccC---cCHHHHHHHHhcccCeEEEEecCC
Q 024975          195 FQDQVVILIGHY---ASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G---~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +++|+++|.|++   -.|..+|..|++.|.+|++..|.+
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            467999999964   378899999999999999999986

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=87.58  E-value=0.28  Score=33.00  Aligned_cols=37  Identities=19%  Similarity=0.145  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccC-eEEEEecCC
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~-~v~~~~r~~  230 (259)
                      ..++.+|+|+|+|.+|.-++..+...|. .|+++.+++
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCCCCEEEEECCCccchhheeccccccccccccccccc
Confidence            3467999999999999888888777775 788888877

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=87.52  E-value=0.21  Score=33.28  Aligned_cols=34  Identities=12%  Similarity=0.061  Sum_probs=22.8

Q ss_pred             CCeEEEECCChHHHHHHH--HHHHc-C---CcEEEEeeCC
Q 024975            2 FRHVAVIGAGAAGLVVGH--ELLRE-G---HTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~--~L~~~-g---~~v~v~e~~~   35 (259)
                      .++|+|||||-.|...+.  .|.+. .   .+++++|.++
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~   42 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK   42 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCCh
Confidence            578999999987755332  22222 2   3799999864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.44  E-value=0.47  Score=33.78  Aligned_cols=33  Identities=27%  Similarity=0.395  Sum_probs=27.4

Q ss_pred             CeEEEECCC-hHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAG-AAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G-~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +-++|.||+ --|.++|..|++.|.+|++.+++.
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            567888873 458889999999999999999863

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=87.34  E-value=0.49  Score=33.21  Aligned_cols=32  Identities=28%  Similarity=0.348  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      +.|+|-|.|-.|..+|..|.+.|.++++.|.+
T Consensus        40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~   71 (230)
T d1leha1          40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN   71 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEeeccc
Confidence            57999999999999999999999999998775

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=87.33  E-value=0.47  Score=34.31  Aligned_cols=33  Identities=24%  Similarity=0.413  Sum_probs=28.4

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|.|| +--|.++|..|++.|.+|++++++.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56788887 5679999999999999999999874

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.31  E-value=0.4  Score=34.06  Aligned_cols=32  Identities=22%  Similarity=0.391  Sum_probs=26.4

Q ss_pred             eEEEECCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~G~-~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      -++|.||+- -|..+|..|+++|.+|++.+++.
T Consensus         9 v~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_           9 IVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            456667754 68899999999999999999974

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=87.26  E-value=0.42  Score=34.83  Aligned_cols=39  Identities=15%  Similarity=0.282  Sum_probs=33.0

Q ss_pred             CCCCCCCeEEEEccC---cCHHHHHHHHhcccCeEEEEecCC
Q 024975          192 PNPFQDQVVILIGHY---ASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       192 ~~~~~~~~v~viG~G---~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +.++++|.++|.|++   -.|..+|..|++.|.+|.+..|.+
T Consensus         3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~   44 (297)
T d1d7oa_           3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVP   44 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence            345678999999976   478899999999999999998865

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=87.25  E-value=0.45  Score=33.66  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=28.5

Q ss_pred             CCeEEEECCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~-~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+.++|.||+- -|.++|..|.+.|.+|++.+++.
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35678888854 78999999999999999999864

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=87.25  E-value=0.24  Score=34.00  Aligned_cols=38  Identities=24%  Similarity=0.211  Sum_probs=33.6

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCCC
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~~  231 (259)
                      ...+++|.|+|.|.+|-++|..+...|.+|....+...
T Consensus        40 el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1          40 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN   77 (197)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccCCeEEEecccccchhHHHhHhhhcccccccCcccc
Confidence            35679999999999999999999999999998887663

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.25  E-value=0.22  Score=32.66  Aligned_cols=30  Identities=37%  Similarity=0.512  Sum_probs=25.4

Q ss_pred             eEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         4 ~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      +|.+||.|.-|...|.+|.+.|..+ ++.+.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~   31 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRT   31 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCC
Confidence            6899999999999999999988765 55554

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.21  E-value=0.31  Score=35.17  Aligned_cols=33  Identities=30%  Similarity=0.418  Sum_probs=27.8

Q ss_pred             CeEEEECCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~-~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|.||+- -|.++|..|+++|.+|++++++.
T Consensus        15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5678888843 68999999999999999999863

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.12  E-value=0.32  Score=32.42  Aligned_cols=33  Identities=21%  Similarity=0.184  Sum_probs=21.6

Q ss_pred             CeEEEECCChHHHH--HHHHHHHc-C---CcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLV--VGHELLRE-G---HTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~--~a~~L~~~-g---~~v~v~e~~~   35 (259)
                      .+|+|||||-.|..  ++..|... .   -++.++|.++
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e   40 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE   40 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCc
Confidence            58999999966543  33333332 1   3899999864

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.95  E-value=0.58  Score=33.08  Aligned_cols=34  Identities=18%  Similarity=0.360  Sum_probs=27.5

Q ss_pred             CeEEEECCC-hHHHHHHHHHHHcCCcEEEEeeCCC
Q 024975            3 RHVAVIGAG-AAGLVVGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         3 ~~v~IIG~G-~~Gl~~a~~L~~~g~~v~v~e~~~~   36 (259)
                      +-++|.||+ =-|.++|.+|++.|.+|++.+++..
T Consensus         6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            456777874 3688899999999999999999753

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.92  E-value=0.32  Score=32.30  Aligned_cols=37  Identities=14%  Similarity=0.073  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccC-eEEEEecCC
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~-~v~~~~r~~  230 (259)
                      ..++++|+|+|+|..|.=++..+...|. +|+++.+.+
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            3467899999999999988888877776 688888777

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=86.92  E-value=0.48  Score=35.70  Aligned_cols=31  Identities=23%  Similarity=0.388  Sum_probs=26.5

Q ss_pred             eEEEECC-ChHHHHHHHHHHHcCCc-EEEEeeC
Q 024975            4 HVAVIGA-GAAGLVVGHELLREGHT-VVVYEKG   34 (259)
Q Consensus         4 ~v~IIG~-G~~Gl~~a~~L~~~g~~-v~v~e~~   34 (259)
                      +|+|.|| |.-|..++.+|.+.|.+ |+.+|+.
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~   34 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKL   34 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            7999998 99999999999999987 5556653

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=86.90  E-value=0.21  Score=32.45  Aligned_cols=34  Identities=26%  Similarity=0.244  Sum_probs=29.4

Q ss_pred             CCeEEEEccCcCHHHHHHHHhccc--CeEEEEecCC
Q 024975          197 DQVVILIGHYASGLDIKRDLAGFA--KEVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~G~~a~e~a~~l~~~~--~~v~~~~r~~  230 (259)
                      ..+|.|||+|..|.-+|..|+..+  .++.++.+.+
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            468999999999999999997765  6899998776

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.89  E-value=0.54  Score=33.23  Aligned_cols=33  Identities=27%  Similarity=0.305  Sum_probs=27.8

Q ss_pred             CeEEEECCC-hHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAG-AAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G-~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|.||+ -.|.++|..|++.|.+|++.+++.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            567888873 468899999999999999999863

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=86.85  E-value=0.22  Score=36.85  Aligned_cols=33  Identities=15%  Similarity=0.195  Sum_probs=28.5

Q ss_pred             CeEEEEccCcCHHHHHHHHhcc--cCeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGF--AKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~--~~~v~~~~r~~  230 (259)
                      -.|+|||+|..|+-.|..+.+.  +.+|.++++.+
T Consensus         6 ~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~   40 (311)
T d1kf6a2           6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY   40 (311)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred             cCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence            3599999999999999999876  56799999866

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=86.75  E-value=0.56  Score=33.48  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=28.3

Q ss_pred             CCeEEEECCC-hHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAG-AAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G-~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .+.++|.||+ =.|.++|..|++.|.+|++.+++.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3568888884 468899999999999999999863

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.74  E-value=0.28  Score=32.51  Aligned_cols=33  Identities=15%  Similarity=0.057  Sum_probs=27.5

Q ss_pred             CeEEEEccCcCHHHHHHHHhcccC--eEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFAK--EVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~~--~v~~~~r~~  230 (259)
                      ++|.|||.|+.|.-+|..|.+.+.  +|+.+.|++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            469999999999999999988874  567676665

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.74  E-value=0.44  Score=33.79  Aligned_cols=32  Identities=22%  Similarity=0.326  Sum_probs=25.6

Q ss_pred             eEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .++|.|| +--|.++|..|+++|.+|++.++++
T Consensus         8 ~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           8 VIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            3444454 6678899999999999999999863

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=86.54  E-value=0.42  Score=31.60  Aligned_cols=38  Identities=13%  Similarity=-0.064  Sum_probs=31.0

Q ss_pred             CCCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          193 NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       193 ~~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ...++++|+|+|+|..|.=.+..+...|.+++++.+++
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            34578999999999999887777777788888888777

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=86.49  E-value=0.35  Score=34.45  Aligned_cols=36  Identities=8%  Similarity=0.159  Sum_probs=30.7

Q ss_pred             CCCCeEEEEccCc---CHHHHHHHHhcccCeEEEEecCC
Q 024975          195 FQDQVVILIGHYA---SGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G~---~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +.+|.++|.|++-   .|..+|..|++.|.+|++..|++
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~   41 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   41 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence            4678889988764   56789999999999999999987

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=86.35  E-value=0.55  Score=31.89  Aligned_cols=33  Identities=9%  Similarity=0.242  Sum_probs=30.3

Q ss_pred             CeEEEECCChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      ..+.|||.|-.|-.+|..|...|.++..+|+..
T Consensus        48 ~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   80 (191)
T d1gdha1          48 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHR   80 (191)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cceEEeecccchHHHHHHHHhhccccccccccc
Confidence            579999999999999999999999999999864

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.32  E-value=0.4  Score=31.55  Aligned_cols=37  Identities=11%  Similarity=-0.055  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ..++++|+|.|+|..|.=++..+...+.+|+.+.+++
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            3467999999999999988888888888888888776

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=86.27  E-value=0.59  Score=33.58  Aligned_cols=33  Identities=21%  Similarity=0.417  Sum_probs=26.6

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +-++|.|| +=.|.++|..|++.|.+|++++++.
T Consensus         7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45667776 4468888999999999999999863

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.14  E-value=0.45  Score=33.89  Aligned_cols=37  Identities=16%  Similarity=0.286  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEccC---cCHHHHHHHHhcccCeEEEEecCC
Q 024975          194 PFQDQVVILIGHY---ASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~G---~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++.+|.++|.|++   -.|..+|..|++.|.+|.+..|.+
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            3568999999975   378999999999999998888876

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=86.06  E-value=0.38  Score=33.05  Aligned_cols=37  Identities=16%  Similarity=0.155  Sum_probs=32.4

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ...+++|+|.|.|..|..+|..|.+.|..|++....+
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~   60 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDT   60 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchH
Confidence            4678999999999999999999999999988766543

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=86.03  E-value=0.37  Score=34.55  Aligned_cols=32  Identities=25%  Similarity=0.430  Sum_probs=24.7

Q ss_pred             eEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      -++|.|| +=-|.++|..|++.|.+|++.++++
T Consensus         6 ~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           6 VAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3455555 3357799999999999999999864

>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-Ala-D-Ala ligase, N-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=85.92  E-value=0.86  Score=26.96  Aligned_cols=35  Identities=26%  Similarity=0.267  Sum_probs=29.6

Q ss_pred             CCCeEEEECCChH---------HHHHHHHHHHcCCcEEEEeeCC
Q 024975            1 MFRHVAVIGAGAA---------GLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         1 ~~~~v~IIG~G~~---------Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      |+.+|+|+-||++         |..+...|.+.++++..+|..+
T Consensus         1 M~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~~i~~~~   44 (96)
T d1iowa1           1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE   44 (96)
T ss_dssp             CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             CCceEEEEeCcCchhhHhHHhhHHHHHHHHHHcCeeEeeecCcc
Confidence            7789999999974         6777778888899999998864

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=85.89  E-value=0.38  Score=34.48  Aligned_cols=37  Identities=30%  Similarity=0.456  Sum_probs=30.7

Q ss_pred             CCCCeEEEEccCc-CHHHHHHHHhcccCeEEEEecCCC
Q 024975          195 FQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSVA  231 (259)
Q Consensus       195 ~~~~~v~viG~G~-~a~e~a~~l~~~~~~v~~~~r~~~  231 (259)
                      +.+|.++|.|++- .|..+|..|++.|.+|.+..|+.+
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4678788888754 677899999999999999999883

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.76  E-value=0.65  Score=32.88  Aligned_cols=38  Identities=11%  Similarity=0.148  Sum_probs=31.2

Q ss_pred             CCCCCCeEEEEccCc-CHHHHHHHHhcccCeEEEEecCC
Q 024975          193 NPFQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       193 ~~~~~~~v~viG~G~-~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +...++.++|.|++. .|.++|..|++.|.+|.+..|+.
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            345678777777755 77799999999999999999987

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=85.65  E-value=0.53  Score=31.08  Aligned_cols=34  Identities=32%  Similarity=0.300  Sum_probs=30.2

Q ss_pred             CCeEEEECCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G~-~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .++|+|||.+. .|..+|..|.+.|..|+++....
T Consensus        37 GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          37 GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            37899999976 99999999999999999998754

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=85.57  E-value=0.75  Score=32.73  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=27.1

Q ss_pred             CeEEEECCC-hHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAG-AAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G-~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|.||+ =.|.++|..|++.|.+|+++.+..
T Consensus         6 K~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~   39 (254)
T d1sbya1           6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV   39 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            567888884 369999999999999999987754

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.51  E-value=0.88  Score=29.30  Aligned_cols=35  Identities=23%  Similarity=0.411  Sum_probs=26.0

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHc-C---CcEEEEeeCCC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLRE-G---HTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~-g---~~v~v~e~~~~   36 (259)
                      |++|+|||| |..|--+...|.++ .   .++..+..+..
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s   40 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQL   40 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSST
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccc
Confidence            579999999 99999999766654 2   36666766543

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=85.41  E-value=0.7  Score=30.88  Aligned_cols=37  Identities=22%  Similarity=0.306  Sum_probs=28.0

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHc-CCcEEEEeeCCCcC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLRE-GHTVVVYEKGEQVG   38 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~-g~~v~v~e~~~~~g   38 (259)
                      |.+|.|||| |..|.-+...|.++ .+++..+-.....|
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG   39 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAG   39 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTT
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCC
Confidence            568999999 99999999999886 45666664444333

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=85.33  E-value=0.8  Score=32.45  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=27.0

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|.|| +=-|.++|..|++.|.+|++.++++
T Consensus         6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~   39 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRP   39 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45677775 4567889999999999999999875

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=85.31  E-value=0.56  Score=33.12  Aligned_cols=36  Identities=11%  Similarity=0.123  Sum_probs=31.4

Q ss_pred             CCCCeEEEEccCc-CHHHHHHHHhcccCeEEEEecCC
Q 024975          195 FQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G~-~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +.+|.++|.|++- .|..+|..|++.|.+|.+..|+.
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4678888888865 78899999999999999999988

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.30  E-value=0.72  Score=32.91  Aligned_cols=33  Identities=33%  Similarity=0.469  Sum_probs=27.0

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +-++|.|| +=.|.++|..|++.|.+|++.+++.
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34788887 4458889999999999999999863

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=85.26  E-value=0.47  Score=34.37  Aligned_cols=29  Identities=24%  Similarity=0.408  Sum_probs=25.6

Q ss_pred             EEEECC-ChHHHHHHHHHHHcCC-cEEEEee
Q 024975            5 VAVIGA-GAAGLVVGHELLREGH-TVVVYEK   33 (259)
Q Consensus         5 v~IIG~-G~~Gl~~a~~L~~~g~-~v~v~e~   33 (259)
                      |+|.|| |..|-.++..|.++|. +|+++|.
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~   32 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN   32 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEEC
Confidence            678887 9999999999999996 7999985

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.25  E-value=0.73  Score=32.60  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=27.1

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +-++|.|| +-.|.++|..|++.|.+|++.++++
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45677787 4468899999999999999999864

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.23  E-value=0.48  Score=31.75  Aligned_cols=30  Identities=23%  Similarity=0.306  Sum_probs=25.4

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHc-CCcEEEE
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLRE-GHTVVVY   31 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~-g~~v~v~   31 (259)
                      |.+|+|||| |..|.-+...|.++ .+++.-+
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l   32 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITAL   32 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEee
Confidence            579999997 99999999999987 5666544

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=85.07  E-value=0.99  Score=26.26  Aligned_cols=33  Identities=18%  Similarity=0.309  Sum_probs=27.2

Q ss_pred             CeEEEECCChHHHHH-HHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAGAAGLVV-GHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G~~Gl~~-a~~L~~~g~~v~v~e~~~   35 (259)
                      .+|=+||-|=+|+++ |..|.++|++|.-.|...
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~   35 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE   35 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            467788988888855 777888999999999874

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=85.04  E-value=0.53  Score=33.60  Aligned_cols=33  Identities=18%  Similarity=0.345  Sum_probs=27.5

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|.|| +=.|.++|..|++.|.+|++.+++.
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56778887 4568899999999999999999863

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=85.03  E-value=0.58  Score=35.43  Aligned_cols=31  Identities=35%  Similarity=0.497  Sum_probs=27.7

Q ss_pred             CeEEEECC-ChHHHHHHHHHHH-cCCcEEEEee
Q 024975            3 RHVAVIGA-GAAGLVVGHELLR-EGHTVVVYEK   33 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~-~g~~v~v~e~   33 (259)
                      ++|+|.|| |.-|..++.+|.+ .|.+|+++|+
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            38999998 9999999999986 6899999996

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.82  E-value=0.51  Score=33.77  Aligned_cols=33  Identities=21%  Similarity=0.312  Sum_probs=26.1

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|.|| +-.|.++|..|++.|.+|++++++.
T Consensus         9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~   42 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   42 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45666776 3357788999999999999999863

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.79  E-value=0.63  Score=34.55  Aligned_cols=33  Identities=24%  Similarity=0.161  Sum_probs=29.3

Q ss_pred             CeE-EEEcc-CcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVV-ILIGH-YASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v-~viG~-G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |+| +|.|+ |+.|..++..|.+.|.+|+.+.|.+
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            467 78787 7999999999999999999999976

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.74  E-value=0.28  Score=33.78  Aligned_cols=34  Identities=18%  Similarity=0.208  Sum_probs=29.5

Q ss_pred             CCeEEEEcc-CcCHHHHHHHHhcccC--eEEEEecCC
Q 024975          197 DQVVILIGH-YASGLDIKRDLAGFAK--EVHIASRSV  230 (259)
Q Consensus       197 ~~~v~viG~-G~~a~e~a~~l~~~~~--~v~~~~r~~  230 (259)
                      +|+|+|.|+ |+.|-.++..|.+.+.  .|+.+.|++
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~   38 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA   38 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCc
Confidence            489999999 9999999999998875  577777776

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=84.66  E-value=0.64  Score=33.14  Aligned_cols=32  Identities=41%  Similarity=0.600  Sum_probs=25.4

Q ss_pred             eE-EEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HV-AVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v-~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +| +|-|| +=-|.++|..|++.|.+|++.+++.
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~   36 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGE   36 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45 55566 3468899999999999999999863

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=84.65  E-value=0.8  Score=32.69  Aligned_cols=33  Identities=21%  Similarity=0.278  Sum_probs=27.4

Q ss_pred             CeEEEECCC-hHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAG-AAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G-~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +-++|.||+ =-|.++|..|++.|.+|++.+++.
T Consensus         9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            457888884 468899999999999999999863

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.64  E-value=0.76  Score=33.59  Aligned_cols=32  Identities=28%  Similarity=0.396  Sum_probs=26.4

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      +-++|.|| +-.|.++|..|++.|.+|++.+++
T Consensus        13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~   45 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRK   45 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            45777777 346888899999999999999986

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.57  E-value=0.51  Score=33.72  Aligned_cols=37  Identities=22%  Similarity=0.239  Sum_probs=30.1

Q ss_pred             CCCCCeEEEEccCc-CHHHHHHHHhcccCeEEEEecCC
Q 024975          194 PFQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~G~-~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++.+|.++|.|++- .|.++|..|++.|.+|.+..|++
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~   40 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSS   40 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            45678888887743 66799999999999999888877

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=84.56  E-value=0.35  Score=34.36  Aligned_cols=35  Identities=17%  Similarity=0.231  Sum_probs=30.3

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhccc-CeEEEEecCC
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSV  230 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~-~~v~~~~r~~  230 (259)
                      .+++|+|+|.|-.|..++..|++.| .+++++....
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            5689999999999999999999998 4688886544

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=84.50  E-value=0.37  Score=31.67  Aligned_cols=37  Identities=16%  Similarity=0.255  Sum_probs=34.5

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ...+|+++|+|-|..|--+|..+...|..|++....|
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            4578999999999999999999999999999999988

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.37  E-value=0.75  Score=32.72  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=26.9

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +-++|.|| +=-|.++|..|++.|.+|++.+++.
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            44666677 4468999999999999999999864

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=84.33  E-value=0.91  Score=32.12  Aligned_cols=33  Identities=12%  Similarity=0.293  Sum_probs=26.9

Q ss_pred             CeEEEECCC-hHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAG-AAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G-~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +-++|.||+ --|.++|..|++.|.+|++.++++
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            456777773 468899999999999999999864

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.28  E-value=0.85  Score=32.37  Aligned_cols=33  Identities=27%  Similarity=0.448  Sum_probs=27.7

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +-++|.|| +=-|.++|..|++.|.+|++.+++.
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56788887 4568899999999999999999863

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.25  E-value=0.55  Score=33.83  Aligned_cols=33  Identities=18%  Similarity=0.350  Sum_probs=26.5

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|.|| +=-|.++|..|++.|.+|++.+++.
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45667776 4457888999999999999999863

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.17  E-value=0.79  Score=33.51  Aligned_cols=42  Identities=36%  Similarity=0.496  Sum_probs=32.5

Q ss_pred             CCCCCCCCCCeEEEEccC-cCHHHHHHHHhcccCeEEEEecCC
Q 024975          189 YRIPNPFQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       189 ~~~~~~~~~~~v~viG~G-~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |.-+..+++|.++|.|++ -.|..+|..|++.|.+|.+..|+.
T Consensus         4 y~~~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1           4 YLAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             SBCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            334445677888888764 366689999999999999999986

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=84.10  E-value=0.75  Score=32.77  Aligned_cols=37  Identities=19%  Similarity=0.221  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEccC-cCHHHHHHHHhcccCeEEEEecCC
Q 024975          194 PFQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~G-~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++++|.++|.|++ -.|..+|..|++.|.+|.+..|++
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3567888888875 366689999999999999999987

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.97  E-value=0.31  Score=34.03  Aligned_cols=31  Identities=23%  Similarity=0.334  Sum_probs=26.3

Q ss_pred             eEEEEccCcCHHHHHHHHhcccC-eEEEEecC
Q 024975          199 VVILIGHYASGLDIKRDLAGFAK-EVHIASRS  229 (259)
Q Consensus       199 ~v~viG~G~~a~e~a~~l~~~~~-~v~~~~r~  229 (259)
                      .++|||+|+.|+.+|..+++.+. .|.++.+.
T Consensus         5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~~   36 (238)
T d1aoga1           5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQ   36 (238)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTSCCCEEEEESC
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEee
Confidence            48999999999999999998874 57777654

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=83.92  E-value=0.62  Score=32.96  Aligned_cols=36  Identities=17%  Similarity=0.038  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecC
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~  229 (259)
                      ...+++|+|-|.|..|..+|..|.+.|..|+-++-.
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecc
Confidence            356899999999999999999999999887766643

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=83.73  E-value=0.55  Score=33.54  Aligned_cols=36  Identities=8%  Similarity=0.123  Sum_probs=30.4

Q ss_pred             CCCCeEEEEcc-Cc--CHHHHHHHHhcccCeEEEEecCC
Q 024975          195 FQDQVVILIGH-YA--SGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~-G~--~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +.+|+++|.|+ |.  .|..+|..|++.|.+|.+..|..
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            46789999995 44  68899999999999999998877

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=83.65  E-value=2.8  Score=27.46  Aligned_cols=37  Identities=14%  Similarity=0.079  Sum_probs=32.4

Q ss_pred             CCCCCeEEEEccCc-CHHHHHHHHhcccCeEEEEecCC
Q 024975          194 PFQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~G~-~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ...+++++|||.|. .|.-++..|.+.+..|++.+++.
T Consensus        34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             ccccceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            45789999999977 78889999999999999998887

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=83.62  E-value=0.93  Score=32.31  Aligned_cols=33  Identities=24%  Similarity=0.391  Sum_probs=27.1

Q ss_pred             CeEEEECCC-hHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAG-AAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G-~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +-++|.||+ =.|.++|..|++.|.+|++.+++.
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            457777874 358889999999999999999864

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=83.55  E-value=0.79  Score=32.74  Aligned_cols=36  Identities=19%  Similarity=0.260  Sum_probs=29.7

Q ss_pred             CCCCeEEEEccCc-CHHHHHHHHhcccCeEEEEecCC
Q 024975          195 FQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G~-~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +.+|.++|.|++- .|..+|..|++.|..|.+..|++
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5678788888743 66689999999999999999976

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.54  E-value=0.48  Score=30.67  Aligned_cols=35  Identities=20%  Similarity=0.167  Sum_probs=29.3

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhcc--cCeEEEEecCC
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGF--AKEVHIASRSV  230 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~--~~~v~~~~r~~  230 (259)
                      .+++|.|||+|..|.-+|..|...  ..++.++.+.+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            457899999999999999998665  45799998766

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.49  E-value=0.75  Score=31.08  Aligned_cols=37  Identities=11%  Similarity=-0.036  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ...++++.|+|.|.+|-.+|..+...+.+|....+..
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d1sc6a1          41 EARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN   77 (188)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccceEEEEeecccchhhhhhhcccccceEeeccccc
Confidence            3567999999999999999999999999999998876

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.42  E-value=0.53  Score=31.45  Aligned_cols=32  Identities=16%  Similarity=0.156  Sum_probs=26.8

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      ..|+|.|| |+.|+.++..+...|.++++..++
T Consensus        27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~   59 (183)
T d1pqwa_          27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGS   59 (183)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CEEEEECCCCCcccccchhhccccccceeeecc
Confidence            35777786 999999999998899999887764

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.35  E-value=0.91  Score=33.24  Aligned_cols=33  Identities=15%  Similarity=0.183  Sum_probs=29.2

Q ss_pred             CeEEEEcc-CcCHHHHHHHHhcccCeEEEEecCC
Q 024975          198 QVVILIGH-YASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~-G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      |+|+|.|+ |..|-.++..|.+.+.+|+.+.|..
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~   35 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFF   35 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            78999998 8899999999999999999987643

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=83.31  E-value=0.61  Score=33.34  Aligned_cols=36  Identities=25%  Similarity=0.408  Sum_probs=30.9

Q ss_pred             CCCCeEEEEccC-cCHHHHHHHHhcccCeEEEEecCC
Q 024975          195 FQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G-~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +++|.++|.|++ -.|..+|..|++.|.+|.+..|++
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            467889999864 467799999999999999999987

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.31  E-value=0.69  Score=31.15  Aligned_cols=37  Identities=19%  Similarity=0.147  Sum_probs=33.3

Q ss_pred             CCCCCeEEEEccCcCHHHHHHHHhcccCeEEEEecCC
Q 024975          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ...++++.|+|.|..|-+++..+..++.+|....|..
T Consensus        41 ~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~   77 (184)
T d1ygya1          41 EIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV   77 (184)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             cccceeeeeccccchhHHHHHHhhhccceEEeecCCC
Confidence            4567999999999999999999999999999888766

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.15  E-value=0.56  Score=36.29  Aligned_cols=35  Identities=20%  Similarity=0.299  Sum_probs=30.2

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhcccC-eEEEEecCC
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSV  230 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~~-~v~~~~r~~  230 (259)
                      .+.+|+|||.|-.|.|++..|+..|- .++++....
T Consensus        36 ~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          36 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             hcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            35689999999999999999998874 689887765

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=83.10  E-value=0.71  Score=33.57  Aligned_cols=37  Identities=27%  Similarity=0.410  Sum_probs=31.2

Q ss_pred             CCCCCeEEEEcc-CcCHHHHHHHHhcccCeEEEEecCC
Q 024975          194 PFQDQVVILIGH-YASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       194 ~~~~~~v~viG~-G~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .+.+|.++|.|+ +-.|..+|..|++.|.+|++..|+.
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            456788888885 5667789999999999999999987

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=82.98  E-value=1  Score=31.82  Aligned_cols=33  Identities=24%  Similarity=0.222  Sum_probs=29.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcCCcEEEEeeC
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      .++|+|=|.|-.|..+|..|.+.|.+|+-+...
T Consensus        31 g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1          31 GKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEeecc
Confidence            368999999999999999999999998876653

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.92  E-value=0.73  Score=30.59  Aligned_cols=32  Identities=22%  Similarity=0.277  Sum_probs=28.3

Q ss_pred             CeEEEECCC-hHHHHHHHHHHHcCCcEEEEeeC
Q 024975            3 RHVAVIGAG-AAGLVVGHELLREGHTVVVYEKG   34 (259)
Q Consensus         3 ~~v~IIG~G-~~Gl~~a~~L~~~g~~v~v~e~~   34 (259)
                      ++++|||-+ ..|.-+|..|.++|..|++++..
T Consensus        30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            689999965 67999999999999999998764

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.90  E-value=0.94  Score=31.73  Aligned_cols=35  Identities=14%  Similarity=0.009  Sum_probs=30.0

Q ss_pred             CCCeEEEEccC-cCHHHHHHHHhcccCeEEEEecCC
Q 024975          196 QDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       196 ~~~~v~viG~G-~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      ++|+++|.|++ -.|..+|..|++.|.+|.++.+.+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            36889999984 478899999999999999998876

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=82.83  E-value=0.73  Score=33.11  Aligned_cols=33  Identities=30%  Similarity=0.336  Sum_probs=26.4

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|.|| +-.|.++|..|++.|.+|++.+++.
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            45677775 4557789999999999999998863

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.70  E-value=0.91  Score=30.07  Aligned_cols=34  Identities=26%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             CCeEEEECCC-hHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            2 FRHVAVIGAG-AAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         2 ~~~v~IIG~G-~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      .++|+|||.+ ..|..+|..|.+.|..|++++...
T Consensus        39 Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t   73 (170)
T d1a4ia1          39 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT   73 (170)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             cceEEEEecCCccchHHHHHHHhccCceEEEeccc
Confidence            3689999995 499999999999999999998853

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.50  E-value=0.47  Score=34.14  Aligned_cols=36  Identities=28%  Similarity=0.385  Sum_probs=30.1

Q ss_pred             CCCCeEEEEccCc-CHHHHHHHHhcccCeEEEEecCC
Q 024975          195 FQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G~-~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +++|.++|.|++- .|..+|..|++.|.+|.++.|+.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5678787777754 66789999999999999999987

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.46  E-value=0.77  Score=34.36  Aligned_cols=36  Identities=14%  Similarity=0.038  Sum_probs=31.9

Q ss_pred             CCCeEEEEcc-CcCHHHHHHHHhcccCeEEEEecCCC
Q 024975          196 QDQVVILIGH-YASGLDIKRDLAGFAKEVHIASRSVA  231 (259)
Q Consensus       196 ~~~~v~viG~-G~~a~e~a~~l~~~~~~v~~~~r~~~  231 (259)
                      ++.+|+|.|+ |+.|..++..|.+.+.+|+.+.|...
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~   50 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   50 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCc
Confidence            5678999996 99999999999999999999987763

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.43  E-value=0.99  Score=31.78  Aligned_cols=36  Identities=17%  Similarity=0.232  Sum_probs=29.7

Q ss_pred             CCCCeEEEEccCc-CHHHHHHHHhcccCeEEEEecCC
Q 024975          195 FQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G~-~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      .++|.++|.|++- .|..+|..|++.|.+|.+..|+.
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~   39 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPN   39 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4678777877753 56689999999999999999987

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=82.35  E-value=0.27  Score=36.40  Aligned_cols=35  Identities=14%  Similarity=0.243  Sum_probs=24.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHH-cCCcEEEEeeCCCc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQV   37 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~-~g~~v~v~e~~~~~   37 (259)
                      +++|+|||+|-++++... |.. ...+|+++|-++.+
T Consensus        78 pk~VLiiG~G~G~~~~~l-l~~~~~~~v~~VEiD~~V  113 (312)
T d1uira_          78 PKRVLIVGGGEGATLREV-LKHPTVEKAVMVDIDGEL  113 (312)
T ss_dssp             CCEEEEEECTTSHHHHHH-TTSTTCCEEEEEESCHHH
T ss_pred             cceEEEeCCCchHHHHHH-HhcCCcceEEEecCCHHH
Confidence            468999999986555433 222 24589999998654

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=82.35  E-value=0.8  Score=32.75  Aligned_cols=32  Identities=22%  Similarity=0.278  Sum_probs=25.4

Q ss_pred             eEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      -++|.|| +-.|.++|..|++.|.+|++.+++.
T Consensus         9 ~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           9 VVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3555565 4568888999999999999999864

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.24  E-value=0.74  Score=33.17  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=26.1

Q ss_pred             CeEEEECCC-hHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAG-AAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G-~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|.||+ =.|.++|..|++.|.+|++.+++.
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            456677763 357788999999999999999863

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=82.18  E-value=0.76  Score=32.90  Aligned_cols=32  Identities=19%  Similarity=0.292  Sum_probs=25.1

Q ss_pred             eEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      -++|.|| +=-|.++|..|++.|.+|++.+++.
T Consensus         7 valVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           7 VAIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3455565 5568888999999999999999863

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=82.08  E-value=0.29  Score=31.51  Aligned_cols=46  Identities=13%  Similarity=0.005  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHhCCceeEEece--eEEEEEEeCCCcEEEEEEecCCceEEEEeCEEEE
Q 024975          106 LRYLQNFAREFGVDQVVRLHT--EVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (259)
Q Consensus       106 ~~~l~~~~~~~~~~~~v~~~~--~v~~i~~~~~~~~~v~~~~g~~~~~~~~ad~VIl  160 (259)
                      .+.+...+++.+++  ++.+.  ++.+++.   ...++.+.+|+    .+.||.+++
T Consensus        91 ~~~~~~~~~~~~I~--~~~~~~~~~v~vd~---~~~~~~~~~Ge----~v~yD~l~v  138 (141)
T d1fcda2          91 ERLYGFGTENAMIE--WHPGPDSAVVKVDG---GEMMVETAFGD----EFKADVINL  138 (141)
T ss_dssp             HHHHCSTTSSCSEE--EECSSTTCEEEEEE---TTTEEEETTCC----EEECSEEEE
T ss_pred             HHHHHHHHHhcCce--eeecCCceEEeecC---CcEEEEeCCCc----EEeeeEEEe
Confidence            34444444556777  67654  4555554   33566777765    799999876

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=81.99  E-value=0.73  Score=32.78  Aligned_cols=33  Identities=33%  Similarity=0.405  Sum_probs=25.5

Q ss_pred             CeEEEECCC-hHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGAG-AAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~G-~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +.++|.||+ =-|.++|..|++.|.+|++.+++.
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            345566653 357799999999999999999863

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.65  E-value=0.72  Score=32.44  Aligned_cols=36  Identities=28%  Similarity=0.421  Sum_probs=30.0

Q ss_pred             CCCCeEEEEccCc-CHHHHHHHHhcccCeEEEEecCC
Q 024975          195 FQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G~-~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +.+|.++|.|++- .|..+|..|++.|.+|.+..|+.
T Consensus         5 l~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~   41 (237)
T d1uzma1           5 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGS   41 (237)
T ss_dssp             CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            4678777777753 67789999999999999999987

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=81.65  E-value=0.67  Score=29.91  Aligned_cols=33  Identities=12%  Similarity=0.143  Sum_probs=27.7

Q ss_pred             CeEEEEccCcCHHHHHHHHhccc--CeEEEEecCC
Q 024975          198 QVVILIGHYASGLDIKRDLAGFA--KEVHIASRSV  230 (259)
Q Consensus       198 ~~v~viG~G~~a~e~a~~l~~~~--~~v~~~~r~~  230 (259)
                      ++|.|||+|..|..+|..|...+  .++.++...+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            78999999999999999887654  5788887765

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=81.59  E-value=0.94  Score=32.12  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=25.5

Q ss_pred             eEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            4 HVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         4 ~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      -++|.|| +=-|.++|..|++.|.+|++++++.
T Consensus        12 valITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1          12 VALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3556677 3468888999999999999999863

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.55  E-value=0.67  Score=33.95  Aligned_cols=34  Identities=15%  Similarity=0.076  Sum_probs=30.9

Q ss_pred             CeEEEEcc-CcCHHHHHHHHhcccCeEEEEecCCC
Q 024975          198 QVVILIGH-YASGLDIKRDLAGFAKEVHIASRSVA  231 (259)
Q Consensus       198 ~~v~viG~-G~~a~e~a~~l~~~~~~v~~~~r~~~  231 (259)
                      |+|+|.|+ |+.|-.++..|++.|.+|+.+.|...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            57999998 89999999999999999999999873

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=81.53  E-value=0.84  Score=32.40  Aligned_cols=33  Identities=18%  Similarity=0.412  Sum_probs=25.7

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +-++|.|| +=-|.++|..|++.|.+|++.+++.
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   40 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            44566665 3357888999999999999999864

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.42  E-value=0.74  Score=32.79  Aligned_cols=33  Identities=21%  Similarity=0.340  Sum_probs=26.0

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +-++|.|| +--|.++|..|++.|.+|++.+++.
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   45 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            44566666 4568888999999999999999863

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.42  E-value=1  Score=31.71  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=30.1

Q ss_pred             CCCCeEEEEccC-cCHHHHHHHHhcccCeEEEEecCC
Q 024975          195 FQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G-~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +.+|.++|.|++ -.|..+|..|++.|.+|.+..|++
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            467888888874 466789999999999999999986

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.37  E-value=0.86  Score=32.98  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=26.3

Q ss_pred             CCeEEEEC-CChHHHH----HHHHHHHcCCcEEEEeeCCC
Q 024975            2 FRHVAVIG-AGAAGLV----VGHELLREGHTVVVYEKGEQ   36 (259)
Q Consensus         2 ~~~v~IIG-~G~~Gl~----~a~~L~~~g~~v~v~e~~~~   36 (259)
                      |+.|+|-| ||.+=.+    +|..|+++|.+|+++|-++.
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ   41 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK   41 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            67888888 5655444    45567778999999998764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=81.33  E-value=0.76  Score=29.91  Aligned_cols=35  Identities=17%  Similarity=0.017  Sum_probs=27.5

Q ss_pred             CCCeEEEEccCcCHHHHHHHHhccc-CeEEEEecCC
Q 024975          196 QDQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSV  230 (259)
Q Consensus       196 ~~~~v~viG~G~~a~e~a~~l~~~~-~~v~~~~r~~  230 (259)
                      +.++|+|||+|..|.-+|..+...+ .++.++...+
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            3578999999999988887776554 3788887665

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.28  E-value=1  Score=31.72  Aligned_cols=36  Identities=14%  Similarity=0.133  Sum_probs=29.9

Q ss_pred             CCCCeEEEEccC-cCHHHHHHHHhcccCeEEEEecCC
Q 024975          195 FQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSV  230 (259)
Q Consensus       195 ~~~~~v~viG~G-~~a~e~a~~l~~~~~~v~~~~r~~  230 (259)
                      +.+|.++|.|++ -.|..+|..|++.|.+|.+..|++
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            456777777764 477799999999999999999987

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=81.27  E-value=0.96  Score=31.91  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=25.8

Q ss_pred             CeEEEECC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 024975            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (259)
Q Consensus         3 ~~v~IIG~-G~~Gl~~a~~L~~~g~~v~v~e~~~   35 (259)
                      +-++|.|| +=-|.++|..|++.|.+|++.++++
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~   38 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSE   38 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            34556576 3458888999999999999999864

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=81.27  E-value=0.43  Score=34.54  Aligned_cols=35  Identities=23%  Similarity=0.386  Sum_probs=24.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHHcC-CcEEEEeeCCCc
Q 024975            2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQV   37 (259)
Q Consensus         2 ~~~v~IIG~G~~Gl~~a~~L~~~g-~~v~v~e~~~~~   37 (259)
                      +.+|+|||+|-++++... |...+ .+|+++|-++.+
T Consensus        76 p~~vLiiGgG~G~~~~~~-l~~~~~~~i~~VEID~~V  111 (274)
T d1iy9a_          76 PEHVLVVGGGDGGVIREI-LKHPSVKKATLVDIDGKV  111 (274)
T ss_dssp             CCEEEEESCTTCHHHHHH-TTCTTCSEEEEEESCHHH
T ss_pred             cceEEecCCCCcHHHHHH-HhcCCcceEEEecCCHHH
Confidence            478999999986655443 33333 589999987554

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=81.23  E-value=0.97  Score=30.32  Aligned_cols=37  Identities=24%  Similarity=0.330  Sum_probs=28.6

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHHc-CCcEEEEeeCCCcC
Q 024975            2 FRHVAVIGA-GAAGLVVGHELLRE-GHTVVVYEKGEQVG   38 (259)
Q Consensus         2 ~~~v~IIG~-G~~Gl~~a~~L~~~-g~~v~v~e~~~~~g   38 (259)
                      +.+|+|||| |..|.-+...|.++ .+++..+-.....|
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG   43 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAG   43 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTT
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCC
Confidence            457999999 99999999999987 45777665544444