Citrus Sinensis ID: 024981

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MAPKRGVKALVAASKRKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQRKKKILKLRLKVPPALNQFTKTLDKNLASNLFKMLLKYRPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQAKTKAKEKLLAKEAAQRMS
cccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHcccccccccHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHccccEEEEEccccccHHHEEcHHHHHHccccEEEEcccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcc
cccccccccccHHHHHHccccccccHccccccccccccccccccccHEccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccHHHHHcHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHccccEEEEEcccEccHEEEcccHEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcc
MAPKRGVKALVAASKRktekvvnplfekrpkqfgiggalppkkdltrfvrwptqvnIQRKKKILKLRlkvppalnQFTKTLDKNLASNLFKMLLKYRPEDRAAKKERLLKKAQAEAegktveskkpivVKYGLNHVTYLIEQNKAQLVVIahdvdpveLVVWLPAlcrkmeipycivkgkarlgviVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEhrkkwgggimgsksqAKTKAKEKLLAKEAAQRMS
mapkrgvkalvaaskrktekvvnplfekrpkqfgiggalppkkdltrfvrwptqvniqrkkkilklrlkvppalnQFTKTLDKNLASNLFKMLLKYRPEDRAAKKERLLKKaqaeaegktveskkpivVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLclttvknedkmeFSRILEAIKANFNDKYDEHRKkwgggimgsksqaktkaKEKLLAKEAAQRMS
MAPKRGVKALVAASKRKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQrkkkilklrlkVPPALNQFTKTLDKNLASNLFKMLLKYRPEDraakkerllkkaqaeaeGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQaktkakekllakeaaQRMS
*******************************QFGIGGALPPKKDLTRFVRWPTQVNIQRKKKILKLRLKVPPALNQFTKTLDKNLASNLFKMLLKY*****************************PIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEH***W*****************************
*****************************PKQFGI**A***KKDLTRFVRWPTQVNIQRK*********VPPALNQFTKTLDKNLASNLFKMLLK**************************************NHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKN**********EAIKANFNDKYDEHRKKWGGGIMGSKSQAKTKAKEKLLAKE**Q***
*********LVAASKRKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQRKKKILKLRLKVPPALNQFTKTLDKNLASNLFKMLLKYRPEDRAAKKER**************ESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMG***********************
*********************VNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQRKKKILKLRLKVPPALNQFTKTLDKNLASNLFKMLLKYRPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQAKTKAKEKLLAKE******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAPKRGVKALVAASKRKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQRKKKILKLRLKVPPALNQFTKTLDKNLASNLFKMLLKYRPEDRxxxxxxxxxxxxxxxxxxxxxSKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQAKTKAKEKLLAKEAAQRMS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query259 2.2.26 [Sep-21-2011]
P35685258 60S ribosomal protein L7a yes no 0.996 1.0 0.876 1e-130
Q9LZH9256 60S ribosomal protein L7a yes no 0.988 1.0 0.830 1e-127
P49692257 60S ribosomal protein L7a yes no 0.934 0.941 0.847 1e-122
O57592266 60S ribosomal protein L7a N/A no 0.953 0.928 0.564 1e-78
Q2TBQ5266 60S ribosomal protein L7a yes no 0.945 0.921 0.565 1e-78
Q90YW2266 60S ribosomal protein L7a N/A no 0.953 0.928 0.572 1e-78
O13672259 60S ribosomal protein L8 yes no 0.926 0.926 0.592 1e-78
P62425266 60S ribosomal protein L7a yes no 0.945 0.921 0.565 2e-78
Q4R5C2266 60S ribosomal protein L7a N/A no 0.945 0.921 0.565 2e-78
P62424266 60S ribosomal protein L7a yes no 0.945 0.921 0.565 2e-78
>sp|P35685|RL7A_ORYSJ 60S ribosomal protein L7a OS=Oryza sativa subsp. japonica GN=RPL7A PE=2 SV=1 Back     alignment and function desciption
 Score =  463 bits (1192), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/259 (87%), Positives = 247/259 (95%), Gaps = 1/259 (0%)

Query: 1   MAPKRGVKALVAASKRKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQRK 60
           MAPKRG +A V A K+KTEKV NPLFEKRPKQFGIGGALPPKKDL RFV+WP  V IQR+
Sbjct: 1   MAPKRGGRAPVPA-KKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQ 59

Query: 61  KKILKLRLKVPPALNQFTKTLDKNLASNLFKMLLKYRPEDRAAKKERLLKKAQAEAEGKT 120
           ++ILK RLKVPPALNQFT+TLDKNLA+NLFKMLLKYRPED+AAKKERLLK+AQAEAEGKT
Sbjct: 60  RRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKT 119

Query: 121 VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGK 180
           VE+KKPIVVKYGLNHVTYLIEQ+KAQLVVIAHDVDP+ELVVWLPALCRKME+PYCIVKGK
Sbjct: 120 VEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGK 179

Query: 181 ARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQ 240
           ARLG IVHKKTASVLCLTTVKNEDK+EFS+ILEAIKANFNDK+DE RKKWGGG+MGSKSQ
Sbjct: 180 ARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQ 239

Query: 241 AKTKAKEKLLAKEAAQRMS 259
           AKTKA+EKLLAKEAAQRM+
Sbjct: 240 AKTKAREKLLAKEAAQRMT 258

Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q9LZH9|RL7A2_ARATH 60S ribosomal protein L7a-2 OS=Arabidopsis thaliana GN=RPL7AB PE=1 SV=1 Back     alignment and function description
>sp|P49692|RL7A1_ARATH 60S ribosomal protein L7a-1 OS=Arabidopsis thaliana GN=RPL7AA PE=1 SV=2 Back     alignment and function description
>sp|O57592|RL7A_TAKRU 60S ribosomal protein L7a OS=Takifugu rubripes GN=rpl7a PE=3 SV=3 Back     alignment and function description
>sp|Q2TBQ5|RL7A_BOVIN 60S ribosomal protein L7a OS=Bos taurus GN=RPL7A PE=2 SV=3 Back     alignment and function description
>sp|Q90YW2|RL7A_ICTPU 60S ribosomal protein L7a OS=Ictalurus punctatus GN=rpl7a PE=2 SV=3 Back     alignment and function description
>sp|O13672|RL8_SCHPO 60S ribosomal protein L8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl8 PE=1 SV=3 Back     alignment and function description
>sp|P62425|RL7A_RAT 60S ribosomal protein L7a OS=Rattus norvegicus GN=Rpl7a PE=1 SV=2 Back     alignment and function description
>sp|Q4R5C2|RL7A_MACFA 60S ribosomal protein L7a OS=Macaca fascicularis GN=RPL7A PE=2 SV=1 Back     alignment and function description
>sp|P62424|RL7A_HUMAN 60S ribosomal protein L7a OS=Homo sapiens GN=RPL7A PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
388492772259 unknown [Medicago truncatula] gi|3885156 1.0 1.0 0.880 1e-131
359807602260 uncharacterized protein LOC100797399 [Gl 1.0 0.996 0.892 1e-131
356501791 554 PREDICTED: pentatricopeptide repeat-cont 1.0 0.467 0.888 1e-131
388503208259 unknown [Lotus japonicus] 1.0 1.0 0.872 1e-129
297734458300 unnamed protein product [Vitis vinifera] 0.996 0.86 0.880 1e-129
449451797257 PREDICTED: 60S ribosomal protein L7a-lik 0.992 1.0 0.876 1e-129
225456392258 PREDICTED: 60S ribosomal protein L7a-lik 0.996 1.0 0.880 1e-129
356538597259 PREDICTED: 60S ribosomal protein L7a-lik 1.0 1.0 0.884 1e-128
226502084258 60S ribosomal protein L7a [Zea mays] gi| 0.996 1.0 0.880 1e-128
225451833258 PREDICTED: 60S ribosomal protein L7a [Vi 0.996 1.0 0.864 1e-128
>gi|388492772|gb|AFK34452.1| unknown [Medicago truncatula] gi|388515687|gb|AFK45905.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/259 (88%), Positives = 249/259 (96%)

Query: 1   MAPKRGVKALVAASKRKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQRK 60
           MAPK+GVKA VAASK+K EKV NPLFEKRPKQFGIGGALPPK+DLTRFV+WP  V +QRK
Sbjct: 1   MAPKKGVKAPVAASKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKNVQVQRK 60

Query: 61  KKILKLRLKVPPALNQFTKTLDKNLASNLFKMLLKYRPEDRAAKKERLLKKAQAEAEGKT 120
           K+ILK RLKVPPALNQFTKTLDKNLA++LFK+LLKYRPED+A KKERLLK+AQAEAEGKT
Sbjct: 61  KRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAEKKERLLKRAQAEAEGKT 120

Query: 121 VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGK 180
           VE+KKPI VKYGLNHVTYLIEQNKAQLVVIAHDVDP+ELVVWLPALCRKMEIPYCIVKGK
Sbjct: 121 VETKKPINVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGK 180

Query: 181 ARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQ 240
           ARLG +VHKKTA+VLCLTTVKNEDKMEFSR+LEAIKANFNDKY+E+RKKWGGGIMGSKSQ
Sbjct: 181 ARLGTVVHKKTAAVLCLTTVKNEDKMEFSRVLEAIKANFNDKYEEYRKKWGGGIMGSKSQ 240

Query: 241 AKTKAKEKLLAKEAAQRMS 259
           AKTKAKE+L+AKEAAQRM+
Sbjct: 241 AKTKAKERLIAKEAAQRMT 259

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359807602|ref|NP_001241416.1| uncharacterized protein LOC100797399 [Glycine max] gi|255638035|gb|ACU19332.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356501791|ref|XP_003519707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Glycine max] Back     alignment and taxonomy information
>gi|388503208|gb|AFK39670.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|297734458|emb|CBI15705.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449451797|ref|XP_004143647.1| PREDICTED: 60S ribosomal protein L7a-like [Cucumis sativus] gi|449506496|ref|XP_004162766.1| PREDICTED: 60S ribosomal protein L7a-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225456392|ref|XP_002284139.1| PREDICTED: 60S ribosomal protein L7a-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356538597|ref|XP_003537789.1| PREDICTED: 60S ribosomal protein L7a-like [Glycine max] Back     alignment and taxonomy information
>gi|226502084|ref|NP_001147139.1| 60S ribosomal protein L7a [Zea mays] gi|194699752|gb|ACF83960.1| unknown [Zea mays] gi|195607614|gb|ACG25637.1| 60S ribosomal protein L7a [Zea mays] gi|414589924|tpg|DAA40495.1| TPA: 60S ribosomal protein L7a [Zea mays] Back     alignment and taxonomy information
>gi|225451833|ref|XP_002281689.1| PREDICTED: 60S ribosomal protein L7a [Vitis vinifera] gi|147858681|emb|CAN81023.1| hypothetical protein VITISV_030542 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
TAIR|locus:2081715256 AT3G62870 [Arabidopsis thalian 0.988 1.0 0.694 3.3e-95
TAIR|locus:2062057257 AT2G47610 [Arabidopsis thalian 0.992 1.0 0.698 4.2e-95
FB|FBgn0014026271 RpL7A "Ribosomal protein L7A" 0.911 0.870 0.552 1.8e-64
CGD|CAL0005018262 RPL8B [Candida albicans (taxid 0.918 0.908 0.524 5.4e-63
UNIPROTKB|Q5ANA1262 RPL8B "Likely cytosolic riboso 0.918 0.908 0.524 5.4e-63
UNIPROTKB|Q2TBQ5266 RPL7A "60S ribosomal protein L 0.911 0.887 0.510 6.9e-63
UNIPROTKB|F2Z4P2266 RPL7A "Uncharacterized protein 0.911 0.887 0.510 1.1e-62
UNIPROTKB|P62424266 RPL7A "60S ribosomal protein L 0.911 0.887 0.510 1.1e-62
RGD|1307586266 Rpl7a "ribosomal protein L7a" 0.911 0.887 0.510 1.1e-62
UNIPROTKB|P62425266 Rpl7a "60S ribosomal protein L 0.911 0.887 0.510 1.1e-62
TAIR|locus:2081715 AT3G62870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
 Identities = 180/259 (69%), Positives = 203/259 (78%)

Query:     1 MAPKRGVKALVAASKRKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQXX 60
             MAPK+GVK    ASK+K EKV NPLFE+RPKQFGIGGALPPKKDL+R+++WP  + +Q  
Sbjct:     1 MAPKKGVKV---ASKKKPEKVTNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQ 57

Query:    61 XXXXXXXXXVPPALNQFTKTLDKNLASNLFKMLLKYRPEDXXXXXXXXXXXXXXXXXGKT 120
                      VPPALNQFTKTLDKNLA++LFK+LLKYRPED                 GK 
Sbjct:    58 KRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAAKKERLLNKAQAEAEGKP 117

Query:   121 VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGK 180
              ESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDP+ELVVWLPALCRKME+PYCIVKGK
Sbjct:   118 AESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGK 177

Query:   181 ARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQ 240
             +RLG +VH+KTA+ LCLTTVKNEDK+EFS+ILEAIKANFNDKY+E+RKKWGGGIMGSKSQ
Sbjct:   178 SRLGAVVHQKTAAALCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQ 237

Query:   241 XXXXXXXXXXXXXXXQRMS 259
                            QRM+
Sbjct:   238 AKTKAKERVIAKEAAQRMN 256
GO:0005737 "cytoplasm" evidence=ISM
GO:0030529 "ribonucleoprotein complex" evidence=IEA
GO:0042254 "ribosome biogenesis" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=ISS
GO:0006412 "translation" evidence=ISS
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
TAIR|locus:2062057 AT2G47610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0014026 RpL7A "Ribosomal protein L7A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
CGD|CAL0005018 RPL8B [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ANA1 RPL8B "Likely cytosolic ribosomal protein L8" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBQ5 RPL7A "60S ribosomal protein L7a" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4P2 RPL7A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P62424 RPL7A "60S ribosomal protein L7a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1307586 Rpl7a "ribosomal protein L7a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P62425 Rpl7a "60S ribosomal protein L7a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q54ZD1RL7A_DICDINo assigned EC number0.48340.91110.8280yesno
P35685RL7A_ORYSJNo assigned EC number0.87640.99611.0yesno
Q966C6RL7A_CAEELNo assigned EC number0.48370.94590.9245yesno
O13672RL8_SCHPONo assigned EC number0.59250.92660.9266yesno
O57592RL7A_TAKRUNo assigned EC number0.56450.95360.9285N/Ano
P62424RL7A_HUMANNo assigned EC number0.56500.94590.9210yesno
P62425RL7A_RATNo assigned EC number0.56500.94590.9210yesno
Q9LZH9RL7A2_ARATHNo assigned EC number0.83010.98841.0yesno
P49692RL7A1_ARATHNo assigned EC number0.84710.93430.9416yesno
P46223RL7A_DROMENo assigned EC number0.60920.91500.8745yesno
P32429RL7A_CHICKNo assigned EC number0.55280.94590.9210yesno
P0DJ14RL7A_TETTHNo assigned EC number0.58000.88800.9019N/Ano
Q4R5C2RL7A_MACFANo assigned EC number0.56500.94590.9210N/Ano
P17076RL8A_YEASTNo assigned EC number0.57140.93430.9453yesno
P12970RL7A_MOUSENo assigned EC number0.56500.94590.9210yesno
Q90YW2RL7A_ICTPUNo assigned EC number0.57250.95360.9285N/Ano
Q2TBQ5RL7A_BOVINNo assigned EC number0.56500.94590.9210yesno
O76732RL7A_ANOGANo assigned EC number0.54230.90730.8671yesno
P29453RL8B_YEASTNo assigned EC number0.56730.93430.9453yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
PTZ00365266 PTZ00365, PTZ00365, 60S ribosomal protein L7Ae-lik 9e-99
PTZ00222263 PTZ00222, PTZ00222, 60S ribosomal protein L7a; Pro 2e-62
pfam0124895 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/ 1e-21
COG1358116 COG1358, RPL8A, Ribosomal protein HS6-type (S12/L3 7e-16
PRK04175122 PRK04175, rpl7ae, 50S ribosomal protein L7Ae; Vali 4e-12
TIGR03677117 TIGR03677, rpl7ae, 50S ribosomal protein L7Ae 2e-11
>gnl|CDD|240382 PTZ00365, PTZ00365, 60S ribosomal protein L7Ae-like; Provisional Back     alignment and domain information 
 Score =  289 bits (740), Expect = 9e-99
 Identities = 143/246 (58%), Positives = 187/246 (76%), Gaps = 1/246 (0%)

Query: 13  ASKRKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQRKKKILKLRLKVPP 72
             K K +K  +PLFEK P+ F IGG + PK DL+R+VRWP  + +QR++++L  RLKVPP
Sbjct: 17  LKKSKKKKQKHPLFEKTPRNFRIGGDIRPKVDLSRYVRWPRYILLQRQRRVLLQRLKVPP 76

Query: 73  ALNQFTKTLDKNLASNLFKMLLKYRPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYG 132
           ALNQFT TLDKN AS L ++L KY+PE RA KK RLLK+A+  A G+ VESKKP ++KYG
Sbjct: 77  ALNQFTYTLDKNQASQLLRLLSKYKPETRAEKKARLLKEAEKAAAGEEVESKKPFMLKYG 136

Query: 133 LNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTA 192
           LNHVT L+E  KA+LVVIAHDVDP+ELV +LPALCRK E+PYCI+KGK+RLG +VH+KTA
Sbjct: 137 LNHVTDLVEYKKAKLVVIAHDVDPIELVCFLPALCRKKEVPYCIIKGKSRLGKLVHQKTA 196

Query: 193 SVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQAKTKAKEKLLAK 252
           +V+ +  V+ ED+ EF  + +  +A FND   E R++WGGGIMG KSQ     +EKL+A 
Sbjct: 197 AVVAIDNVRKEDQAEFDNLCKNFRAMFNDNS-ELRRRWGGGIMGIKSQHVIAKREKLIAM 255

Query: 253 EAAQRM 258
           E A+++
Sbjct: 256 ENAKKL 261

Length = 266
>gnl|CDD|140249 PTZ00222, PTZ00222, 60S ribosomal protein L7a; Provisional Back     alignment and domain information
>gnl|CDD|216387 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Back     alignment and domain information
>gnl|CDD|224277 COG1358, RPL8A, Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|179766 PRK04175, rpl7ae, 50S ribosomal protein L7Ae; Validated Back     alignment and domain information
>gnl|CDD|188367 TIGR03677, rpl7ae, 50S ribosomal protein L7Ae Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 259
PTZ00365266 60S ribosomal protein L7Ae-like; Provisional 100.0
PTZ00222263 60S ribosomal protein L7a; Provisional 100.0
KOG3166209 consensus 60S ribosomal protein L7A [Translation, 100.0
COG1358116 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Tr 99.91
TIGR03677117 rpl7ae 50S ribosomal protein L7Ae. Multifunctional 99.91
PRK04175122 rpl7ae 50S ribosomal protein L7Ae; Validated 99.9
PRK07714100 hypothetical protein; Provisional 99.81
PRK0728398 hypothetical protein; Provisional 99.79
PRK0101899 50S ribosomal protein L30e; Reviewed 99.79
PTZ00106108 60S ribosomal protein L30; Provisional 99.79
PF0124895 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/G 99.78
PRK05583104 ribosomal protein L7Ae family protein; Provisional 99.77
KOG3167153 consensus Box H/ACA snoRNP component, involved in 99.74
PRK1360282 putative ribosomal protein L7Ae-like; Provisional 99.73
PRK1360084 putative ribosomal protein L7Ae-like; Provisional 99.69
PRK09190220 hypothetical protein; Provisional 99.69
PRK0668382 hypothetical protein; Provisional 99.69
PRK1360182 putative L7Ae-like ribosomal protein; Provisional 99.65
KOG3387131 consensus 60S ribosomal protein 15.5kD/SNU13, NHP2 99.42
KOG3406134 consensus 40S ribosomal protein S12 [Translation, 99.36
COG1911100 RPL30 Ribosomal protein L30E [Translation, ribosom 99.23
KOG2988112 consensus 60S ribosomal protein L30 [Translation, 98.07
PF08228158 RNase_P_pop3: RNase P subunit Pop3; InterPro: IPR0 97.29
PF0803276 SpoU_sub_bind: RNA 2'-O ribose methyltransferase s 93.23
PF15608100 PELOTA_1: PELOTA RNA binding domain 92.0
PF03465113 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This do 91.82
TIGR00108409 eRF peptide chain release factor eRF/aRF, subunit 89.91
TIGR03676403 aRF1/eRF1 peptide chain release factor 1, archaeal 87.75
PRK04011411 peptide chain release factor 1; Provisional 87.04
TIGR00111351 pelota probable translation factor pelota. This mo 85.12
PF1008797 DUF2325: Uncharacterized protein conserved in bact 84.79
cd01422115 MGS Methylglyoxal synthase catalyzes the enolizati 81.1
PLN02821460 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate red 80.45
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.6e-103  Score=711.72  Aligned_cols=253  Identities=58%  Similarity=0.957  Sum_probs=244.4

Q ss_pred             Ccccccch---hhhhhccccCCccccCCCccccCCCCCCCCcccccccCcceehhhhhhHHHhhhccCCcccccccccCC
Q 024981            6 GVKALVAA---SKRKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQRKKKILKLRLKVPPALNQFTKTLD   82 (259)
Q Consensus         6 ~~~~~~~~---~~~~~k~~~npl~e~rpknf~ig~~i~pkrdl~~fvkwp~yi~lqrq~~il~~~lkvpp~inqf~~~ld   82 (259)
                      +++++++|   ++.++++++|||||+|||||||||||||+|||||||+||+||||||||+||++||||||+||||+++||
T Consensus         7 ~~k~~~ap~~~~~~~~~k~~~plfe~rpknf~iG~~iqpkrdlsrfvkwP~yirlQRqk~iL~~RlKvPp~inqF~~~ld   86 (266)
T PTZ00365          7 KSKKLPAPAPLKKSKKKKQKHPLFEKTPRNFRIGGDIRPKVDLSRYVRWPRYILLQRQRRVLLQRLKVPPALNQFTYTLD   86 (266)
T ss_pred             cccccCCCccccccccccccCcccccCccccCcCCCCCCCccchhhcccchhhhHHHHHHHHHHhcCCCccHhhhhhhhc
Confidence            45555555   344567889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHh
Q 024981           83 KNLASNLFKMLLKYRPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVW  162 (259)
Q Consensus        83 ~~~a~~l~kl~~kyrPE~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~  162 (259)
                      +|+|+|||+|++||||||++||++||+..|+++|+|++.++++|.+|.+|+|+|+++|++++++|||||+||||++++.|
T Consensus        87 k~~a~~lfkll~KYrPEtk~~kk~RL~~~A~~~a~g~~~~~kkp~~vk~Gin~VtklIekkKAkLVIIA~DVsP~t~kk~  166 (266)
T PTZ00365         87 KNQASQLLRLLSKYKPETRAEKKARLLKEAEKAAAGEEVESKKPFMLKYGLNHVTDLVEYKKAKLVVIAHDVDPIELVCF  166 (266)
T ss_pred             HhhHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhhHHHHHHHHhCCccEEEEeCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999779999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCEEEeCCcchhhhhhcCCCeEEEEEeecCcccHHHHHHHHHHHHHhhhhhhhhhhhccCCCCCCchhHHH
Q 024981          163 LPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQAK  242 (259)
Q Consensus       163 LpaLC~~~~VPy~~v~sK~~LG~avGkk~~a~Vaitd~g~eDk~~l~klve~i~~nynd~y~e~~~~wgg~~lg~ks~~~  242 (259)
                      ||+||++|+||||+++|+++||+++|++++++|||+|+++||+++|++||++|++|||| |||+|+|||||+||.||+++
T Consensus       167 LP~LC~k~~VPY~iv~sK~eLG~AIGkktraVVAItdV~~EDk~~l~~lv~~~~~~~nd-~~e~rr~wGG~~~g~ks~~~  245 (266)
T PTZ00365        167 LPALCRKKEVPYCIIKGKSRLGKLVHQKTAAVVAIDNVRKEDQAEFDNLCKNFRAMFND-NSELRRRWGGGIMGIKSQHV  245 (266)
T ss_pred             HHHHHhccCCCEEEECCHHHHHHHhCCCCceEEEecccCHHHHHHHHHHHHHHHHhccc-cHhhhhhcCCCccChhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcC
Q 024981          243 TKAKEKLLAKEAAQRMS  259 (259)
Q Consensus       243 ~~k~~k~~~~e~~~k~~  259 (259)
                      ++++||++++|+|+|+|
T Consensus       246 ~~k~~k~~~~e~~~k~~  262 (266)
T PTZ00365        246 IAKREKLIAMENAKKLG  262 (266)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999999975

>PTZ00222 60S ribosomal protein L7a; Provisional Back     alignment and domain information
>KOG3166 consensus 60S ribosomal protein L7A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae Back     alignment and domain information
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated Back     alignment and domain information
>PRK07714 hypothetical protein; Provisional Back     alignment and domain information
>PRK07283 hypothetical protein; Provisional Back     alignment and domain information
>PRK01018 50S ribosomal protein L30e; Reviewed Back     alignment and domain information
>PTZ00106 60S ribosomal protein L30; Provisional Back     alignment and domain information
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK05583 ribosomal protein L7Ae family protein; Provisional Back     alignment and domain information
>KOG3167 consensus Box H/ACA snoRNP component, involved in ribosomal RNA pseudouridinylation [RNA processing and modification] Back     alignment and domain information
>PRK13602 putative ribosomal protein L7Ae-like; Provisional Back     alignment and domain information
>PRK13600 putative ribosomal protein L7Ae-like; Provisional Back     alignment and domain information
>PRK09190 hypothetical protein; Provisional Back     alignment and domain information
>PRK06683 hypothetical protein; Provisional Back     alignment and domain information
>PRK13601 putative L7Ae-like ribosomal protein; Provisional Back     alignment and domain information
>KOG3387 consensus 60S ribosomal protein 15 Back     alignment and domain information
>KOG3406 consensus 40S ribosomal protein S12 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2988 consensus 60S ribosomal protein L30 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF08228 RNase_P_pop3: RNase P subunit Pop3; InterPro: IPR013241 This family of fungal proteins form a subunit of RNase P, the ribonucleoprotein enzyme that cleaves the leader sequence of precursor tRNAs to generate mature tRNAs Back     alignment and domain information
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications Back     alignment and domain information
>PF15608 PELOTA_1: PELOTA RNA binding domain Back     alignment and domain information
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1 Back     alignment and domain information
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information
>PRK04011 peptide chain release factor 1; Provisional Back     alignment and domain information
>TIGR00111 pelota probable translation factor pelota Back     alignment and domain information
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal Back     alignment and domain information
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
3izr_H258 Localization Of The Large Subunit Ribosomal Protein 1e-107
2zkr_f266 Structure Of A Mammalian Ribosomal 60s Subunit With 6e-68
4a17_F255 T.Thermophila 60s Ribosomal Subunit In Complex With 7e-66
3izs_H256 Localization Of The Large Subunit Ribosomal Protein 5e-63
3zf7_x276 High-resolution Cryo-electron Microscopy Structure 2e-44
1s1i_G119 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 2e-28
3jyw_G113 Structure Of The 60s Proteins For Eukaryotic Riboso 5e-28
3lwo_C123 Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONT 1e-09
3nmu_C129 Crystal Structure Of Substrate-Bound Halfmer Box CD 1e-09
2hvy_D130 Crystal Structure Of An HACA BOX RNP FROM PYROCOCCU 1e-09
2czw_A124 Crystal Structure Analysis Of Protein Component Ph1 1e-09
3hjw_C120 Structure Of A Functional Ribonucleoprotein Pseudou 1e-09
1pxw_A128 Crystal Structure Of L7ae Srnp Core Protein From Py 2e-09
2fc3_A124 Crystal Structure Of The Extremely Thermostable Aer 3e-09
1rlg_A119 Molecular Basis Of Box CD RNA-Protein Interaction: 7e-09
3id5_C130 Crystal Structure Of Sulfolobus Solfataricus CD RNP 2e-08
3paf_A117 M. Jannaschii L7ae Mutant Length = 117 1e-07
1ra4_A120 Crystal Structure Of The Methanococcus Jannaschii L 1e-07
1sds_A117 Structure Of Protein L7ae Bound To A K-Turn Derived 1e-07
3o85_A122 Giardia Lamblia 15.5kd Rna Binding Protein Length = 2e-06
2jnb_A144 Solution Structure Of Rna-Binding Protein 15.5k Len 4e-06
3g4s_F119 Co-Crystal Structure Of Tiamulin Bound To The Large 6e-06
2ozb_A130 Structure Of A Human Prp31-15.5k-U4 Snrna Complex L 6e-06
1s72_F120 Refined Crystal Structure Of The Haloarcula Marismo 6e-06
1e7k_A128 Crystal Structure Of The Spliceosomal 15.5kd Protei 8e-06
1ffk_E119 Crystal Structure Of The Large Ribosomal Subunit Fr 2e-05
2lbx_A121 Solution Structure Of The S. Cerevisiae HACA RNP PR 2e-05
2aif_A135 Crystal Structure Of High Mobility Like Protein, Nh 6e-05
1zwz_A126 Structural Comparison Of Yeast Snornp And Splicesom 7e-05
2ale_A134 Crystal Structure Of Yeast Rna Splicing Factor Snu1 8e-05
2lbw_A121 Solution Structure Of The S. Cerevisiae HACA RNP PR 9e-05
>pdb|3IZR|H Chain H, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 258 Back     alignment and structure 
Iteration: 1

 Score =  385 bits (990), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/259 (73%), Positives = 205/259 (79%), Gaps = 1/259 (0%)
Query: 1   MAPKRGVKALVAASKRKTEKVVNPLFEKRPKQFGIGGALPPKKDLTRFVRWPTQVNIQXX 60
           MAPKRG +A V A K+KTEKV NPLFEKRPKQFGIGGALPPKKDL RFV+WP  V IQ  
Sbjct: 1   MAPKRGGRAPVPA-KKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQ 59
Query: 61  XXXXXXXXXVPPALNQFTKTLDKNLASNLFKMLLKYRPEDXXXXXXXXXXXXXXXXXGKT 120
                    VPPALNQFT+TLDKNLA+NLFKMLLKYRPED                 GKT
Sbjct: 60  RRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKT 119
Query: 121 VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCIVKGK 180
           VE+KKPIVVKYGLNHVTYLIEQ+KAQLVVIAHDVDP+ELVVWLPALCRKME+PYCIVKGK
Sbjct: 120 VEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGK 179
Query: 181 ARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWGGGIMGSKSQ 240
           ARLG IVHKKTASVLCLTTVKNEDK+EFS+ILEAIKANFNDK+DE RKKWGGG+MGSKSQ
Sbjct: 180 ARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQ 239
Query: 241 XXXXXXXXXXXXXXXQRMS 259
                          QRM+
Sbjct: 240 AKTKAREKLLAKEAAQRMT 258
>pdb|2ZKR|FF Chain f, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 266 Back     alignment and structure
>pdb|4A17|F Chain F, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 255 Back     alignment and structure
>pdb|3IZS|H Chain H, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 256 Back     alignment and structure
>pdb|3ZF7|XX Chain x, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 276 Back     alignment and structure
>pdb|1S1I|G Chain G, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 119 Back     alignment and structure
>pdb|3JYW|G Chain G, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 113 Back     alignment and structure
>pdb|3LWO|C Chain C, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING 5BRU Length = 123 Back     alignment and structure
>pdb|3NMU|C Chain C, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP Length = 129 Back     alignment and structure
>pdb|2HVY|D Chain D, Crystal Structure Of An HACA BOX RNP FROM PYROCOCCUS FURIOSUS Length = 130 Back     alignment and structure
>pdb|2CZW|A Chain A, Crystal Structure Analysis Of Protein Component Ph1496p Of P.Horikoshii Ribonuclease P Length = 124 Back     alignment and structure
>pdb|3HJW|C Chain C, Structure Of A Functional Ribonucleoprotein Pseudouridine Synthase Bound To A Substrate Rna Length = 120 Back     alignment and structure
>pdb|1PXW|A Chain A, Crystal Structure Of L7ae Srnp Core Protein From Pyrococcus Abyssii Length = 128 Back     alignment and structure
>pdb|2FC3|A Chain A, Crystal Structure Of The Extremely Thermostable Aeropyrum Pernix L7ae Multifunctional Protein Length = 124 Back     alignment and structure
>pdb|1RLG|A Chain A, Molecular Basis Of Box CD RNA-Protein Interaction: Co- Crystal Structure Of The Archaeal Srnp Intiation Complex Length = 119 Back     alignment and structure
>pdb|3ID5|C Chain C, Crystal Structure Of Sulfolobus Solfataricus CD RNP ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half CD RNA Length = 130 Back     alignment and structure
>pdb|3PAF|A Chain A, M. Jannaschii L7ae Mutant Length = 117 Back     alignment and structure
>pdb|1RA4|A Chain A, Crystal Structure Of The Methanococcus Jannaschii L7ae Protein Length = 120 Back     alignment and structure
>pdb|1SDS|A Chain A, Structure Of Protein L7ae Bound To A K-Turn Derived From An Archaeal Box HACA SRNA Length = 117 Back     alignment and structure
>pdb|3O85|A Chain A, Giardia Lamblia 15.5kd Rna Binding Protein Length = 122 Back     alignment and structure
>pdb|2JNB|A Chain A, Solution Structure Of Rna-Binding Protein 15.5k Length = 144 Back     alignment and structure
>pdb|3G4S|F Chain F, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 119 Back     alignment and structure
>pdb|2OZB|A Chain A, Structure Of A Human Prp31-15.5k-U4 Snrna Complex Length = 130 Back     alignment and structure
>pdb|1S72|F Chain F, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 120 Back     alignment and structure
>pdb|1E7K|A Chain A, Crystal Structure Of The Spliceosomal 15.5kd Protein Bound To A U4 Snrna Fragment Length = 128 Back     alignment and structure
>pdb|1FFK|E Chain E, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 119 Back     alignment and structure
>pdb|2LBX|A Chain A, Solution Structure Of The S. Cerevisiae HACA RNP PROTEIN NHP2P Length = 121 Back     alignment and structure
>pdb|2AIF|A Chain A, Crystal Structure Of High Mobility Like Protein, Nhp2, Putative From Cryptosporidium Parvum Length = 135 Back     alignment and structure
>pdb|1ZWZ|A Chain A, Structural Comparison Of Yeast Snornp And Splicesomal Protein Snu13p With Its Homologs Length = 126 Back     alignment and structure
>pdb|2ALE|A Chain A, Crystal Structure Of Yeast Rna Splicing Factor Snu13p Length = 134 Back     alignment and structure
>pdb|2LBW|A Chain A, Solution Structure Of The S. Cerevisiae HACA RNP PROTEIN NHP2P-S82w Mutant Length = 121 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
3iz5_H258 60S ribosomal protein L7A (L7AE); eukaryotic ribos 3e-77
3izc_H256 60S ribosomal protein RPL8 (L7AE); eukaryotic ribo 4e-76
4a17_F255 RPL7A, 60S ribosomal protein L9; eukaryotic riboso 1e-74
2zkr_f266 60S ribosomal protein L7A; protein-RNA complex, 60 4e-70
3jyw_G113 60S ribosomal protein L8(A); eukaryotic ribosome, 2e-33
2aif_A135 Ribosomal protein L7A; high-mobility like protein, 9e-30
2fc3_A124 50S ribosomal protein L7AE; alpha-beta-alpha sandw 2e-28
3o85_A122 Ribosomal protein L7AE; alpha beta sandwich fold, 5e-28
2lbw_A121 H/ACA ribonucleoprotein complex subunit 2; L7AE, s 1e-27
2jnb_A144 NHP2-like protein 1; splicing, KINK-turn RNA-bindi 8e-27
2ale_A134 SNU13, NHP2/L7AE family protein YEL026W; splicing, 8e-26
1vq8_F120 50S ribosomal protein L7AE; ribosome 50S, protein- 1e-25
1rlg_A119 50S ribosomal protein L7AE; protein-RNA, structura 2e-25
1xbi_A120 50S ribosomal protein L7AE; alpha-beta-alpha sandw 8e-23
2xzm_U126 Ribosomal protein L7AE containing protein; ribosom 3e-18
3v7e_A82 Ribosome-associated protein L7AE-like; RNA-protein 2e-13
3v7q_A101 Probable ribosomal protein YLXQ; L7AE superfamily, 3e-06
3u5c_M143 40S ribosomal protein S12, 40S ribosomal protein S 1e-05
3on1_A101 BH2414 protein; structural genomics, PSI-2, protei 7e-04
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F Length = 255 Back     alignment and structure
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 266 Back     alignment and structure
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G Length = 113 Back     alignment and structure
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1 Length = 135 Back     alignment and structure
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A Length = 124 Back     alignment and structure
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia} Length = 122 Back     alignment and structure
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A Length = 121 Back     alignment and structure
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1 Length = 144 Back     alignment and structure
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A Length = 134 Back     alignment and structure
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ... Length = 120 Back     alignment and structure
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1 Length = 119 Back     alignment and structure
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A Length = 120 Back     alignment and structure
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U Length = 126 Back     alignment and structure
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis} Length = 82 Back     alignment and structure
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis} Length = 101 Back     alignment and structure
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M Length = 143 Back     alignment and structure
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans} Length = 101 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
3iz5_H258 60S ribosomal protein L7A (L7AE); eukaryotic ribos 100.0
4a17_F255 RPL7A, 60S ribosomal protein L9; eukaryotic riboso 100.0
3izc_H256 60S ribosomal protein RPL8 (L7AE); eukaryotic ribo 100.0
2zkr_f266 60S ribosomal protein L7A; protein-RNA complex, 60 100.0
3jyw_G113 60S ribosomal protein L8(A); eukaryotic ribosome, 99.97
2lbw_A121 H/ACA ribonucleoprotein complex subunit 2; L7AE, s 99.96
2ale_A134 SNU13, NHP2/L7AE family protein YEL026W; splicing, 99.95
1xbi_A120 50S ribosomal protein L7AE; alpha-beta-alpha sandw 99.93
1rlg_A119 50S ribosomal protein L7AE; protein-RNA, structura 99.92
1vq8_F120 50S ribosomal protein L7AE; ribosome 50S, protein- 99.92
2xzm_U126 Ribosomal protein L7AE containing protein; ribosom 99.92
2fc3_A124 50S ribosomal protein L7AE; alpha-beta-alpha sandw 99.92
3o85_A122 Ribosomal protein L7AE; alpha beta sandwich fold, 99.9
2jnb_A144 NHP2-like protein 1; splicing, KINK-turn RNA-bindi 99.89
2aif_A135 Ribosomal protein L7A; high-mobility like protein, 99.88
3v7q_A101 Probable ribosomal protein YLXQ; L7AE superfamily, 99.87
3on1_A101 BH2414 protein; structural genomics, PSI-2, protei 99.87
3cpq_A110 50S ribosomal protein L30E; RNA-protein, elongatio 99.85
1w41_A101 50S ribosomal protein L30E; electrostatic interact 99.84
4a18_G104 RPL30; ribosome, eukaryotic initiation factor 6, E 99.83
3j21_Z99 50S ribosomal protein L30E; archaea, archaeal, KIN 99.83
3iz5_f112 60S ribosomal protein L30 (L30E); eukaryotic ribos 99.83
3v7e_A82 Ribosome-associated protein L7AE-like; RNA-protein 99.83
3u5e_c105 L32, RP73, YL38, 60S ribosomal protein L30; transl 99.82
3u5c_M143 40S ribosomal protein S12, 40S ribosomal protein S 99.78
3vi6_A125 60S ribosomal protein L30; three-layer alpha/beta/ 99.73
2kg4_A165 Growth arrest and DNA-damage-inducible protein GA 99.68
3cg6_A146 Growth arrest and DNA-damage-inducible 45 gamma; a 99.17
3ffm_A167 Growth arrest and DNA-damage-inducible protein GAD 98.98
3ir9_A166 Peptide chain release factor subunit 1; structural 92.17
3nk6_A 277 23S rRNA methyltransferase; nosiheptide, nosihepti 88.25
1b93_A152 Protein (methylglyoxal synthase); glycolytic bypas 84.87
3agk_A373 Peptide chain release factor subunit 1; translatio 84.15
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 83.09
3e20_C441 Eukaryotic peptide chain release factor subunit 1; 82.78
1dt9_A437 ERF1, protein (eukaryotic peptide chain release fa 81.44
1vmd_A178 MGS, methylglyoxal synthase; TM1185, structural ge 81.38
2xw6_A134 MGS, methylglyoxal synthase; lyase; 1.08A {Thermus 81.31
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 80.97
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 80.31
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 80.04
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F Back     alignment and structure
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G Back     alignment and structure
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A Back     alignment and structure
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A Back     alignment and structure
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A Back     alignment and structure
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1 Back     alignment and structure
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ... Back     alignment and structure
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U Back     alignment and structure
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A Back     alignment and structure
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia} Back     alignment and structure
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1 Back     alignment and structure
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1 Back     alignment and structure
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis} Back     alignment and structure
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans} Back     alignment and structure
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii} Back     alignment and structure
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A Back     alignment and structure
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6 Back     alignment and structure
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis} Back     alignment and structure
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2 Back     alignment and structure
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M Back     alignment and structure
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C Back     alignment and structure
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens} Back     alignment and structure
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A Back     alignment and structure
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens} Back     alignment and structure
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Back     alignment and structure
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A* Back     alignment and structure
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Back     alignment and structure
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Back     alignment and structure
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Back     alignment and structure
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Back     alignment and structure
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2 Back     alignment and structure
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 259
d1rlga_113 d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon Arc 4e-23
d2fc3a1124 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyr 3e-21
d1xbia1115 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeo 2e-20
d1vqof1119 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeo 3e-20
d2ozba1125 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Hu 9e-18
d2alea1126 d.79.3.1 (A:1-126) Small nuclear ribonucleoprotein 8e-17
d2aifa1115 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Crypto 8e-16
d1w3ex198 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 1e-10
d1t0kb_97 d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L3 7e-07
d2bo1a1100 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L3 2e-06
>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 113 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 88.7 bits (220), Expect = 4e-23
 Identities = 42/120 (35%), Positives = 56/120 (46%), Gaps = 11/120 (9%)

Query: 98  PEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPV 157
           PED   +   LL+K +         S K   VK G N  T  +E+  A+LV IA DVDP 
Sbjct: 2   PEDMQNEALSLLEKVRE--------SGK---VKKGTNETTKAVERGLAKLVYIAEDVDPP 50

Query: 158 ELVVWLPALCRKMEIPYCIVKGKARLGVIVHKKTASVLCLTTVKNEDKMEFSRILEAIKA 217
           E+V  LP LC +  +PY  VK K  LG  V  +          + E + E   ++E IK 
Sbjct: 51  EIVAHLPLLCEEKNVPYIYVKSKNDLGRAVGIEVPCASAAIINEGELRKELGSLVEKIKG 110
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 56636]} Length = 124 Back     information, alignment and structure
>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115 Back     information, alignment and structure
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 119 Back     information, alignment and structure
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Back     information, alignment and structure
>d2alea1 d.79.3.1 (A:1-126) Small nuclear ribonucleoprotein-associated protein 1, Snu13p {Saccharomyces cerevisiae [TaxId: 4932]} Length = 126 Back     information, alignment and structure
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium parvum [TaxId: 5807]} Length = 115 Back     information, alignment and structure
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Length = 98 Back     information, alignment and structure
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 97 Back     information, alignment and structure
>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
d2fc3a1124 Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 5 99.93
d1rlga_113 Ribosomal protein L7ae {Archaeon Archaeoglobus ful 99.92
d1vqof1119 Ribosomal protein L7ae {Archaeon Haloarcula marism 99.91
d1xbia1115 Ribosomal protein L7ae {Archaeon Methanococcus jan 99.91
d2alea1126 Small nuclear ribonucleoprotein-associated protein 99.9
d2ozba1125 Spliceosomal 15.5kd protein {Human (Homo sapiens) 99.89
d2aifa1115 Ribosomal protein L7ae {Cryptosporidium parvum [Ta 99.88
d1t0kb_97 Eukaryotic ribosomal protein L30 (L30e) {Baker's y 99.79
d1w3ex198 Eukaryotic ribosomal protein L30 (L30e) {Archaeon 99.77
d2bo1a1100 Eukaryotic ribosomal protein L30 (L30e) {Archaeon 99.75
d1gz0a276 RlmB, N-terminal domain {Escherichia coli [TaxId: 96.38
d1dt9a2146 C-terminal domain of eukaryotic peptide chain rele 94.47
d2vgna3104 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 91.46
d1x52a1111 Cell division protein pelota {Human (Homo sapiens) 88.26
d1vmda_156 Methylglyoxal synthase, MgsA {Thermotoga maritima 86.4
d2qi2a395 Cell division protein pelota {Thermoplasma acidoph 85.25
d1ipaa2105 RrmA (RrmH), N-terminal domain {Thermus thermophil 84.99
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: L30e/L7ae ribosomal proteins
domain: Ribosomal protein L7ae
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.93  E-value=2.3e-26  Score=185.42  Aligned_cols=115  Identities=39%  Similarity=0.569  Sum_probs=103.0

Q ss_pred             CcccHHHHHHHHHHHHHHHHcCCCCCCCCCceEecchHHHHHHHHhcCccEEEEeCCCCchhhHHhHHHHhhhcCCCEEE
Q 024981           97 RPEDRAAKKERLLKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPVELVVWLPALCRKMEIPYCI  176 (259)
Q Consensus        97 rPE~k~eK~~rLl~~A~k~aaGk~~~~~~p~~l~~G~n~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~~~~VPy~~  176 (259)
                      -||+.+++++++|+.|++  +|+         |+.|+++|+++|++++++|||||+|++|.+++.+++.+|++++|||++
T Consensus         8 ~pe~l~~~i~~~L~~a~k--~gk---------l~~G~~~v~k~i~~~ka~lVvlA~D~~p~~~~~~l~~~c~~~~Vp~~~   76 (124)
T d2fc3a1           8 VPEDLAEKAYEAVKRARE--TGR---------IKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVY   76 (124)
T ss_dssp             CCHHHHHHHHHHHHHHHH--HSE---------EEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEE
T ss_pred             CcHHHHHHHHHHHHHHHH--cCC---------EeecHHHHHHHHHcCCCeEEEEeCCCChHHHHHHHHHHHHcCCCcEEE
Confidence            488899999999999999  898         999999999999999999999999999999999999999999999999


Q ss_pred             eCCcchhhhhhcCCC-eEEEEEeecCcccHHHHHHHHHHHHHhhhhhhhhhhhccC
Q 024981          177 VKGKARLGVIVHKKT-ASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEHRKKWG  231 (259)
Q Consensus       177 v~sK~~LG~avGkk~-~a~Vaitd~g~eDk~~l~klve~i~~nynd~y~e~~~~wg  231 (259)
                      ++|+.+||++||+++ +++|+|+|.|..+ ..+.+++|        .++++|++||
T Consensus        77 ~~sk~~LG~a~G~~~~~s~v~i~~~g~~~-~l~~~l~~--------~~~~lr~~~g  123 (124)
T d2fc3a1          77 VPSKKRLGEAAGIEVAAASVAIIEPGDAE-TLVREIVE--------KVKELRAKAG  123 (124)
T ss_dssp             ESCHHHHHHHTTCSSCCSEEEEEECGGGH-HHHHHHHH--------HHHHHHHHHT
T ss_pred             eCCHHHHHHHHCCCCCEEEEEEEeccchH-HHHHHHHH--------HHHHHHHhhC
Confidence            999999999999996 5799999987433 33455554        3468999999
>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2alea1 d.79.3.1 (A:1-126) Small nuclear ribonucleoprotein-associated protein 1, Snu13p {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium parvum [TaxId: 5807]} Back     information, alignment and structure
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d1gz0a2 d.79.3.3 (A:2-77) RlmB, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vmda_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1ipaa2 d.79.3.3 (A:1-105) RrmA (RrmH), N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure