Citrus Sinensis ID: 024982

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MNPQQTQPDSDHPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDGEPLVKVKEPEKDDEDDHVDRKLKGFFFLFFLNFVQDSSIFFFNWVLVCLLFV
cccccccccccccccccEEEccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHcccccEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHccccEEEEccccccccccccccccccHHHHHHccccccEEEEcccccccccccEEEEcccccccccccccccccEEEEEHHHHHcccccccHHHHHHHHHHcc
cccccccccccccccccEEEccccccccccccccccccccccEEEEEEEccHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEcccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHccccEEEEcccccHHHHHHHHEEEccccHHHEccccccEEEEEcccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcc
mnpqqtqpdsdhphlptikihnpsantttpaatptptslarrkigvavdlsdeSAFAVRWAVHHYLRPGDAVILVHvsptsvlfgadwgplpqqqinsenasnieHQKQLEDDFDTFTATKAAdlarplkeagfpykihivkDHDMRERLCLEIERLSLSAVIMGsrgfgaekrgsdgklgsvsdycvhhcvcpvvvvrypddkddgeplvkvkepekddeddhvdrKLKGFFFLFFLNFVQDSSIFFFNWVLVCLLFV
mnpqqtqpdsdhphlPTIKihnpsantttpaatptptslaRRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADlarplkeagfpyKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVrypddkddgeplvkvkepekddeddhVDRKLKGFFFLFFLNFVQDSSIFFFNWVLVCLLFV
MNPQQTQPDSDHPHLPTIKIHnpsantttpaatptptsLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYcvhhcvcpvvvvRYPDDKDDGEPLvkvkepekddeddhvdrklkGffflfflnfVQDSSIFFFNWVLVCLLFV
******************************************KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPL***********************DTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGA******GKLGSVSDYCVHHCVCPVVVVRYP*************************RKLKGFFFLFFLNFVQDSSIFFFNWVLVCLLF*
*******************************************IGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV********************************GFFFLFFLNFVQDSSIFFFNWVLVCLLFV
************PHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDGEPLVKVKE********HVDRKLKGFFFLFFLNFVQDSSIFFFNWVLVCLLFV
***********HPHLPTIK*H*******************RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDGEPLVKVKEPEKDDEDDHVDRKLKGFFFLFFLNFVQDSSIFFFNWVLVCLLFV
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHi
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MNPQQTQPDSDHPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDGEPLVKVKEPEKDDEDDHVDRKLKGFFFLFFLNFVQDSSIFFFNWVLVCLLFV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query259 2.2.26 [Sep-21-2011]
Q8LGG8175 Universal stress protein no no 0.254 0.377 0.318 0.0005
>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2 Back     alignment and function desciption
 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 141 VKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200
           +K  D ++ +C E++R+    +++GSRG G   R     +G+VS +CV H  CPV+ ++ 
Sbjct: 107 IKTGDPKDVICQEVKRVRPDFLVVGSRGLG---RFQKVFVGTVSAFCVKHAECPVMTIKR 163

Query: 201 PDDKDDGEP 209
             D+   +P
Sbjct: 164 NADETPSDP 172

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
224122994242 predicted protein [Populus trichocarpa] 0.768 0.822 0.666 3e-71
297792899247 hypothetical protein ARALYDRAFT_918574 [ 0.830 0.870 0.703 5e-70
224115094256 predicted protein [Populus trichocarpa] 0.799 0.808 0.682 2e-69
356517215255 PREDICTED: uncharacterized protein LOC10 0.822 0.835 0.654 2e-69
51971917260 unknown protein [Arabidopsis thaliana] 0.799 0.796 0.728 5e-69
224114117241 predicted protein [Populus trichocarpa] 0.667 0.717 0.687 1e-68
297799256264 predicted protein [Arabidopsis lyrata su 0.783 0.768 0.732 2e-68
449458207259 PREDICTED: uncharacterized protein LOC10 0.752 0.752 0.683 2e-68
343172026226 adenine nucleotide alpha hydrolases-like 0.725 0.831 0.657 3e-68
51969908260 unknown protein [Arabidopsis thaliana] 0.783 0.780 0.732 3e-68
>gi|224122994|ref|XP_002330415.1| predicted protein [Populus trichocarpa] gi|222871800|gb|EEF08931.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 148/222 (66%), Positives = 166/222 (74%), Gaps = 23/222 (10%)

Query: 9   DSDHPHLPTIKIHNPSANTTTPAATPTPTSLA---RRKIGVAVDLSDESAFAVRWAVHHY 65
           D D P LPTIKIH+  +    P       +L    RRKIGVAVDLSDESA+AVRW+VHHY
Sbjct: 19  DPDQPLLPTIKIHHHPSPPRHPHPPSATPTLTPTTRRKIGVAVDLSDESAYAVRWSVHHY 78

Query: 66  LRPGDAVILVHVSPTSVLFGADWGPLP-----QQQI---------NSE------NASNIE 105
           +RPGD+VIL+HVSPTSVL GADWGPLP     Q Q+         NSE      N ++ +
Sbjct: 79  IRPGDSVILLHVSPTSVLLGADWGPLPLSTPTQSQLDLLNNNSKFNSEIDSKTKNENSEK 138

Query: 106 HQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMG 165
            Q + EDDFD FTA+KAAD+ARPLKEA  PYKIHIVKDHDM+ERLCLEIERL LSAVIMG
Sbjct: 139 PQPRQEDDFDAFTASKAADIARPLKEAQIPYKIHIVKDHDMKERLCLEIERLGLSAVIMG 198

Query: 166 SRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDG 207
           SRGFGA  RGSD +LGSVSDYCVHHC CPVVVVRYP+DKD G
Sbjct: 199 SRGFGAAIRGSDERLGSVSDYCVHHCFCPVVVVRYPEDKDCG 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297792899|ref|XP_002864334.1| hypothetical protein ARALYDRAFT_918574 [Arabidopsis lyrata subsp. lyrata] gi|297310169|gb|EFH40593.1| hypothetical protein ARALYDRAFT_918574 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224115094|ref|XP_002316938.1| predicted protein [Populus trichocarpa] gi|222860003|gb|EEE97550.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356517215|ref|XP_003527284.1| PREDICTED: uncharacterized protein LOC100817735 [Glycine max] Back     alignment and taxonomy information
>gi|51971917|dbj|BAD44623.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224114117|ref|XP_002316672.1| predicted protein [Populus trichocarpa] gi|222859737|gb|EEE97284.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297799256|ref|XP_002867512.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297313348|gb|EFH43771.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449458207|ref|XP_004146839.1| PREDICTED: uncharacterized protein LOC101209390 [Cucumis sativus] Back     alignment and taxonomy information
>gi|343172026|gb|AEL98717.1| adenine nucleotide alpha hydrolases-like protein, partial [Silene latifolia] Back     alignment and taxonomy information
>gi|51969908|dbj|BAD43646.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
TAIR|locus:2131719260 PHOS34 "AT4G27320" [Arabidopsi 0.779 0.776 0.636 1.1e-64
TAIR|locus:2147319242 PHOS32 "AT5G54430" [Arabidopsi 0.779 0.834 0.630 6e-64
TAIR|locus:2200036242 AT1G11360 [Arabidopsis thalian 0.629 0.673 0.639 2.1e-52
TAIR|locus:2094751 804 AT3G21210 [Arabidopsis thalian 0.428 0.138 0.56 1.7e-30
TAIR|locus:2097755201 AT3G03270 [Arabidopsis thalian 0.478 0.616 0.335 1.9e-12
TAIR|locus:2086102163 AT3G17020 "AT3G17020" [Arabido 0.525 0.834 0.326 4.1e-10
TAIR|locus:2084525160 AT3G53990 "AT3G53990" [Arabido 0.521 0.843 0.266 1.2e-07
TAIR|locus:2076381204 AT3G58450 "AT3G58450" [Arabido 0.517 0.656 0.283 6.6e-06
TAIR|locus:2024291171 AT1G09740 "AT1G09740" [Arabido 0.501 0.760 0.298 1.9e-05
TAIR|locus:2043273162 AT2G47710 "AT2G47710" [Arabido 0.486 0.777 0.272 8.9e-05
TAIR|locus:2131719 PHOS34 "AT4G27320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 135/212 (63%), Positives = 151/212 (71%)

Query:     8 PDSDHPHLPTIKIHXXXXXXXXXXXXXXXXXLA--------RRKIGVAVDLSDESAFAVR 59
             PDSD+PHLP IKIH                  A        RRKIGVAVDLS+ESAFAVR
Sbjct:     3 PDSDYPHLPNIKIHHPSSPRHSHHHSSSTPSAATPTPTAGARRKIGVAVDLSEESAFAVR 62

Query:    60 WAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIE--HQKQLEDDFDTF 117
             WAV HY+RPGDAV+++HVSPTSVLFGADWGPLP Q     +A+       K  ++DFD F
Sbjct:    63 WAVDHYIRPGDAVVILHVSPTSVLFGADWGPLPLQTPPPPSAATDPGAQPKPSQEDFDAF 122

Query:   118 TATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSD 177
             T++K ADLA+PLKEAGFP+KIHIVKDHDMRERLCLE ERL+LSAVIMGSRGFGAEKRGSD
Sbjct:   123 TSSKVADLAKPLKEAGFPHKIHIVKDHDMRERLCLETERLNLSAVIMGSRGFGAEKRGSD 182

Query:   178 GKLGSVSDYXXXXXXXXXXXXRYPDDKDDGEP 209
             GKLGSVSDY            RYPDD+D   P
Sbjct:   183 GKLGSVSDYCVHHCVCPVVVVRYPDDRDGPAP 214
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0002238 "response to molecule of fungal origin" evidence=RCA;IDA
GO:0000902 "cell morphogenesis" evidence=RCA
GO:0016049 "cell growth" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
TAIR|locus:2147319 PHOS32 "AT5G54430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200036 AT1G11360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094751 AT3G21210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097755 AT3G03270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086102 AT3G17020 "AT3G17020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084525 AT3G53990 "AT3G53990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076381 AT3G58450 "AT3G58450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024291 AT1G09740 "AT1G09740" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043273 AT2G47710 "AT2G47710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
cd00293130 cd00293, USP_Like, Usp: Universal stress protein f 2e-24
pfam00582139 pfam00582, Usp, Universal stress protein family 2e-22
COG0589154 COG0589, UspA, Universal stress protein UspA and r 1e-15
cd01989146 cd01989, STK_N, The N-terminal domain of Eukaryoti 3e-05
>gnl|CDD|238182 cd00293, USP_Like, Usp: Universal stress protein family Back     alignment and domain information 
 Score = 94.4 bits (235), Expect = 2e-24
 Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 26/156 (16%)

Query: 43  KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENAS 102
           +I VAVD S+ES  A+RWA     R G  ++L+HV        A+   L ++        
Sbjct: 1   RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEE-------- 52

Query: 103 NIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAV 162
             E +  LE             L   L EAG   +  ++ + D  E +    E L    +
Sbjct: 53  --EARALLE------------ALREALAEAGVKVETVVL-EGDPAEAILEAAEELGADLI 97

Query: 163 IMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198
           +MGSRG    +R     LGSV++  + H  CPV+VV
Sbjct: 98  VMGSRGRSGLRR---LLLGSVAERVLRHAPCPVLVV 130

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity. Length = 130
>gnl|CDD|216006 pfam00582, Usp, Universal stress protein family Back     alignment and domain information
>gnl|CDD|223662 COG0589, UspA, Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|238947 cd01989, STK_N, The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 259
PRK11175305 universal stress protein UspE; Provisional 99.93
PRK15456142 universal stress protein UspG; Provisional 99.92
PRK15005144 universal stress protein F; Provisional 99.92
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 99.92
PRK11175305 universal stress protein UspE; Provisional 99.9
PRK09982142 universal stress protein UspD; Provisional 99.9
PRK15118144 universal stress global response regulator UspA; P 99.89
PRK10116142 universal stress protein UspC; Provisional 99.89
PF00582140 Usp: Universal stress protein family; InterPro: IP 99.89
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.86
cd01987124 USP_OKCHK USP domain is located between the N-term 99.84
cd00293130 USP_Like Usp: Universal stress protein family. The 99.79
COG0589154 UspA Universal stress protein UspA and related nuc 99.76
PRK10490 895 sensor protein KdpD; Provisional 99.62
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 99.57
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 99.54
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 98.41
PLN03159832 cation/H(+) antiporter 15; Provisional 97.8
PLN03159 832 cation/H(+) antiporter 15; Provisional 97.34
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 96.65
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 96.08
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 95.41
PRK12342254 hypothetical protein; Provisional 94.91
PRK03359256 putative electron transfer flavoprotein FixA; Revi 94.1
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 93.5
PF01012164 ETF: Electron transfer flavoprotein domain; InterP 93.02
PRK06029185 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Prov 92.37
TIGR00591 454 phr2 photolyase PhrII. All proteins in this family 90.69
PRK07313182 phosphopantothenoylcysteine decarboxylase; Validat 90.26
COG0037298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 89.91
COG2086260 FixA Electron transfer flavoprotein, beta subunit 89.48
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 89.09
PRK05579 399 bifunctional phosphopantothenoylcysteine decarboxy 88.68
cd01712177 ThiI ThiI is required for thiazole synthesis in th 88.19
cd01985181 ETF The electron transfer flavoprotein (ETF) serve 87.41
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 87.23
COG0041162 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) m 87.18
TIGR02113177 coaC_strep phosphopantothenoylcysteine decarboxyla 86.86
KOG1650769 consensus Predicted K+/H+-antiporter [Inorganic io 86.5
TIGR00268252 conserved hypothetical protein TIGR00268. The N-te 85.86
TIGR00342371 thiazole biosynthesis/tRNA modification protein Th 85.72
PF02441129 Flavoprotein: Flavoprotein; InterPro: IPR003382 Th 85.7
PRK13982 475 bifunctional SbtC-like/phosphopantothenoylcysteine 85.29
PRK13820 394 argininosuccinate synthase; Provisional 84.66
PRK10660 436 tilS tRNA(Ile)-lysidine synthetase; Provisional 84.42
cd01995169 ExsB ExsB is a transcription regulator related pro 84.2
COG0541 451 Ffh Signal recognition particle GTPase [Intracellu 84.12
PRK05253301 sulfate adenylyltransferase subunit 2; Provisional 83.23
TIGR01162156 purE phosphoribosylaminoimidazole carboxylase, Pur 82.38
PLN00200 404 argininosuccinate synthase; Provisional 81.63
TIGR03556 471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 81.55
TIGR00521 390 coaBC_dfp phosphopantothenoylcysteine decarboxylas 80.73
TIGR02852187 spore_dpaB dipicolinic acid synthetase, B subunit. 80.57
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information 
Probab=99.93  E-value=4.8e-25  Score=194.19  Aligned_cols=175  Identities=19%  Similarity=0.206  Sum_probs=135.3

Q ss_pred             CCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHH
Q 024982           39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFT  118 (259)
Q Consensus        39 ~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  118 (259)
                      |+++|||||+|+|+.+..|+++|+.+|+..+++++++|+.+.........  .           .....+...+...+..
T Consensus         1 ~~~~~ILv~~D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~   67 (305)
T PRK11175          1 AKYQNILVVIDPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSYEMTTL--L-----------SPDEREAMRQGVISQR   67 (305)
T ss_pred             CCcceEEEEcCCCccccHHHHHHHHHHHhcCCCEEEEEeccCchhhhhcc--c-----------chhHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999986532211100  0           0011112222222334


Q ss_pred             HHHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEE
Q 024982          119 ATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV  198 (259)
Q Consensus       119 ~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV  198 (259)
                      ++++++..+.+...+++++..+.+++++.++|++.+++.++||||+|+++++++.+.   ++||++++|+++++||||+|
T Consensus        68 ~~~l~~~~~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~---~~gs~~~~l~~~~~~pvlvv  144 (305)
T PRK11175         68 TAWIREQAKPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESV---IFTPTDWHLLRKCPCPVLMV  144 (305)
T ss_pred             HHHHHHHHHHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhh---ccChhHHHHHhcCCCCEEEe
Confidence            455666666666678999998887667999999999999999999999999999999   99999999999999999999


Q ss_pred             eCCCCCCCCCCeeeecCCCCCCcchhhhccc
Q 024982          199 RYPDDKDDGEPLVKVKEPEKDDEDDHVDRKL  229 (259)
Q Consensus       199 ~~~~~~~~~~~l~av~~~~~~~~~~~~~~~~  229 (259)
                      |...+....++++++|.+.+...++.++.+.
T Consensus       145 ~~~~~~~~~~Ilva~D~s~~~~~~~~~~~~a  175 (305)
T PRK11175        145 KDQDWPEGGKILVAVNVASEEPYHDALNEKL  175 (305)
T ss_pred             cccccCCCCeEEEEeCCCCCccchhHHHHHH
Confidence            9876667788999999887765554444433

>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK12342 hypothetical protein; Provisional Back     alignment and domain information
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems Back     alignment and domain information
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion] Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated Back     alignment and domain information
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway Back     alignment and domain information
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal Back     alignment and domain information
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI Back     alignment and domain information
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN [] Back     alignment and domain information
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional Back     alignment and domain information
>PRK13820 argininosuccinate synthase; Provisional Back     alignment and domain information
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional Back     alignment and domain information
>cd01995 ExsB ExsB is a transcription regulator related protein Back     alignment and domain information
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein Back     alignment and domain information
>PLN00200 argininosuccinate synthase; Provisional Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic Back     alignment and domain information
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 5e-34
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 6e-25
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 2e-18
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 2e-17
3loq_A294 Universal stress protein; structural genomics, PSI 6e-17
3loq_A294 Universal stress protein; structural genomics, PSI 4e-13
3tnj_A150 Universal stress protein (USP); structural genomic 1e-16
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 3e-16
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 3e-16
3fg9_A156 Protein of universal stress protein USPA family; A 7e-16
2z08_A137 Universal stress protein family; uncharacterized c 9e-16
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 2e-15
3s3t_A146 Nucleotide-binding protein, universal stress PROT 4e-15
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 3e-14
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 1e-09
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 5e-14
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 4e-09
3dlo_A155 Universal stress protein; unknown function, struct 3e-13
3fdx_A143 Putative filament protein / universal stress PROT; 6e-13
3olq_A 319 Universal stress protein E; structural genomics, P 8e-13
3olq_A319 Universal stress protein E; structural genomics, P 1e-07
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 3e-10
3mt0_A290 Uncharacterized protein PA1789; structural genomic 4e-07
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Length = 175 Back     alignment and structure
 Score =  120 bits (302), Expect = 5e-34
 Identities = 36/180 (20%), Positives = 70/180 (38%), Gaps = 25/180 (13%)

Query: 42  RKIGVAVDLSDESAF---------AVRWAVHHYLRPGDA---VILVHVSPTSVLFGADWG 89
            K+ VAV+ S    +         A  W +   +R   +   ++L+HV         D  
Sbjct: 6   TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVD 65

Query: 90  PLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRER 149
            +          ++ E  + +                    E G   +  I    D ++ 
Sbjct: 66  SIY---------ASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIK-TGDPKDV 115

Query: 150 LCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDGEP 209
           +C E++R+    +++GSRG G  ++     +G+VS +CV H  CPV+ ++   D+   +P
Sbjct: 116 ICQEVKRVRPDFLVVGSRGLGRFQKVF---VGTVSAFCVKHAECPVMTIKRNADETPSDP 172
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Length = 138 Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Length = 162 Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Length = 141 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Length = 294 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Length = 294 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Length = 150 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Length = 170 Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Length = 163 Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Length = 156 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Length = 137 Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} Length = 147 Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} Length = 146 Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Length = 309 Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Length = 309 Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Length = 268 Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Length = 268 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Length = 155 Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Length = 143 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Length = 319 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Length = 319 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Length = 290 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Length = 290 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
3s3t_A146 Nucleotide-binding protein, universal stress PROT 99.94
3olq_A 319 Universal stress protein E; structural genomics, P 99.93
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 99.93
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 99.92
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 99.92
3fg9_A156 Protein of universal stress protein USPA family; A 99.92
3tnj_A150 Universal stress protein (USP); structural genomic 99.92
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 99.91
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.91
2z08_A137 Universal stress protein family; uncharacterized c 99.91
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 99.91
3dlo_A155 Universal stress protein; unknown function, struct 99.91
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 99.9
3olq_A319 Universal stress protein E; structural genomics, P 99.9
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 99.9
3fdx_A143 Putative filament protein / universal stress PROT; 99.9
3loq_A294 Universal stress protein; structural genomics, PSI 99.9
3loq_A294 Universal stress protein; structural genomics, PSI 99.89
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.89
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.88
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.88
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 99.86
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.85
1q77_A138 Hypothetical protein AQ_178; structural genomics, 99.82
2iel_A138 Hypothetical protein TT0030; TT0030,thermus thermo 95.65
3a2k_A 464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 93.04
1wy5_A317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 92.9
3g40_A294 Na-K-CL cotransporter; alpha/beta fold 10-stranded 92.35
3ih5_A217 Electron transfer flavoprotein alpha-subunit; alph 91.47
2xry_A 482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 90.21
1o97_C264 Electron transferring flavoprotein beta-subunit; F 90.14
1efp_B252 ETF, protein (electron transfer flavoprotein); ele 88.68
1efv_B255 Electron transfer flavoprotein; electron transport 88.38
4b4k_A181 N5-carboxyaminoimidazole ribonucleotide mutase; is 86.96
4grd_A173 N5-CAIR mutase, phosphoribosylaminoimidazole carbo 86.52
3qjg_A175 Epidermin biosynthesis protein EPID; structural ge 86.41
2ywx_A157 Phosphoribosylaminoimidazole carboxylase catalyti; 85.71
3g40_A294 Na-K-CL cotransporter; alpha/beta fold 10-stranded 84.3
1xmp_A170 PURE, phosphoribosylaminoimidazole carboxylase; pu 83.17
3trh_A169 Phosphoribosylaminoimidazole carboxylase carboxylt 83.08
3kuu_A174 Phosphoribosylaminoimidazole carboxylase catalyti 82.92
3oow_A166 Phosphoribosylaminoimidazole carboxylase,catalyic; 81.44
1u11_A182 PURE (N5-carboxyaminoimidazole ribonucleotide MUT; 81.0
3ors_A163 N5-carboxyaminoimidazole ribonucleotide mutase; is 80.48
1dnp_A 471 DNA photolyase; DNA repair, electron transfer, exc 80.42
3bl5_A219 Queuosine biosynthesis protein QUEC; PREQ1 biosynt 80.19
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
Probab=99.94  E-value=2.3e-25  Score=173.63  Aligned_cols=142  Identities=20%  Similarity=0.192  Sum_probs=116.8

Q ss_pred             CCCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHH
Q 024982           39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFT  118 (259)
Q Consensus        39 ~~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  118 (259)
                      ++++|||||+|+|+.+..|+++|+.+|+..+++|+++||.+........               .....+...+...+..
T Consensus         3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~---------------~~~~~~~~~~~~~~~~   67 (146)
T 3s3t_A            3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPA---------------LDPVLSELLDAEAAHA   67 (146)
T ss_dssp             CCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGG---------------GHHHHHHHHHHHHHHH
T ss_pred             CccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccc---------------cccccHHHHHHHHHHH
Confidence            3689999999999999999999999999999999999999875432110               0001222333344445


Q ss_pred             HHHHHHHhhhhhhCCc-cEEEEEEecCchHHHHHH-HHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEE
Q 024982          119 ATKAADLARPLKEAGF-PYKIHIVKDHDMRERLCL-EIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV  196 (259)
Q Consensus       119 ~~~~~~~~~~~~~~~v-~v~~~v~~g~~~~~~Il~-~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVl  196 (259)
                      ++.++++.+.+...|+ +++.++..|+ +.++|++ ++++.++||||||+++++.+.++   ++||++++|+++++||||
T Consensus        68 ~~~l~~~~~~~~~~g~~~~~~~~~~g~-~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~---~~Gs~~~~vl~~~~~pVl  143 (146)
T 3s3t_A           68 KDAMRQRQQFVATTSAPNLKTEISYGI-PKHTIEDYAKQHPEIDLIVLGATGTNSPHRV---AVGSTTSYVVDHAPCNVI  143 (146)
T ss_dssp             HHHHHHHHHHHTTSSCCCCEEEEEEEC-HHHHHHHHHHHSTTCCEEEEESCCSSCTTTC---SSCHHHHHHHHHCSSEEE
T ss_pred             HHHHHHHHHHHHhcCCcceEEEEecCC-hHHHHHHHHHhhcCCCEEEECCCCCCCcceE---EEcchHHHHhccCCCCEE
Confidence            5556667777777799 9999999986 9999999 99999999999999999999999   999999999999999999


Q ss_pred             EEe
Q 024982          197 VVR  199 (259)
Q Consensus       197 vV~  199 (259)
                      +||
T Consensus       144 vV~  146 (146)
T 3s3t_A          144 VIR  146 (146)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            996
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4 Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans} Back     alignment and structure
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C* Back     alignment and structure
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 Back     alignment and structure
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S* Back     alignment and structure
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis} Back     alignment and structure
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia} Back     alignment and structure
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0 Back     alignment and structure
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} Back     alignment and structure
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans} Back     alignment and structure
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1 Back     alignment and structure
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii} Back     alignment and structure
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* Back     alignment and structure
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A* Back     alignment and structure
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A Back     alignment and structure
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp} Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 259
d2gm3a1171 c.26.2.4 (A:5-175) Putative ethylene-responsive pr 4e-20
d1mjha_160 c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archa 2e-19
d1tq8a_147 c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobac 7e-17
d1jmva_140 c.26.2.4 (A:) Universal stress protein A, UspA {Ha 6e-16
d2z3va1135 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 { 8e-15
d1q77a_138 c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex 5e-06
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 82.6 bits (203), Expect = 4e-20
 Identities = 35/180 (19%), Positives = 68/180 (37%), Gaps = 25/180 (13%)

Query: 42  RKIGVAVDLSDESAF---------AVRWAVHHYLRPGD---AVILVHVSPTSVLFGADWG 89
            K+ VAV+ S    +         A  W +   +R       ++L+HV         D  
Sbjct: 2   TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVD 61

Query: 90  PLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRER 149
            +          ++ E  + +                    E G   +  I      ++ 
Sbjct: 62  SIY---------ASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGD-PKDV 111

Query: 150 LCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDGEP 209
           +C E++R+    +++GSRG G  ++     +G+VS +CV H  CPV+ ++   D+   +P
Sbjct: 112 ICQEVKRVRPDFLVVGSRGLGRFQKVF---VGTVSAFCVKHAECPVMTIKRNADETPSDP 168
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 160 Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 147 Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Length = 140 Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Length = 135 Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Length = 138 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 99.96
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 99.92
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 99.91
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 99.91
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 99.88
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 99.85
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 94.77
d1efpb_246 Small, beta subunit of electron transfer flavoprot 94.04
d3clsc1262 Small, beta subunit of electron transfer flavoprot 92.73
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 90.33
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 89.23
d2c5sa1218 Thiamine biosynthesis protein ThiI, C-terminal dom 89.15
d1efvb_252 Small, beta subunit of electron transfer flavoprot 88.73
d1xmpa_155 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 88.29
d1u11a_159 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 88.11
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 87.91
d1qcza_163 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 86.5
d1o4va_169 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 85.83
d2a9pa1117 DNA-binding response regulator MicA, N-terminal do 83.95
d3clsd1192 Large, alpha subunit of electron transfer flavopro 83.64
d1u3da2185 Cryptochrome {Thale cress (Arabidopsis thaliana) [ 80.47
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=7e-28  Score=189.60  Aligned_cols=158  Identities=25%  Similarity=0.284  Sum_probs=124.7

Q ss_pred             CCCeEEEeecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcccCCCCCCCCccccccchhhhHHHHHHHHHHHHHHHH
Q 024982           40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA  119 (259)
Q Consensus        40 ~~~rILVavD~s~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  119 (259)
                      ++||||||+|+|+.+..|++||+.+|+..+++|+++||+++.............. ........+...+.+++...+..+
T Consensus         2 m~~~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1mjha_           2 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLG-VAGLNKSVEEFENELKNKLTEEAK   80 (160)
T ss_dssp             CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC------------------CHHHHHHHHHHHHHHHH
T ss_pred             CcCeEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEEEeccccccccccccccccc-ccccchhHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999987754322211111111 111112233444455566666677


Q ss_pred             HHHHHHhhhhhhCCccEEEEEEecCchHHHHHHHHHhcCCcEEEEecCCCCcccccCCCcCCcHHHHHhhcCCccEEEEe
Q 024982          120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR  199 (259)
Q Consensus       120 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~Il~~a~~~~~dLIVlG~~~~~~~~~~~~~l~gs~~~~ll~~s~~PVlvV~  199 (259)
                      ++++.+.+.+...|++++.++..|+ +.+.|++++++.++||||||+++++.++++   ++||++++|+++++|||++||
T Consensus        81 ~~l~~~~~~~~~~gv~~~~~~~~G~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~~---~~GS~a~~vl~~s~~pVlvV~  156 (160)
T d1mjha_          81 NKMENIKKELEDVGFKVKDIIVVGI-PHEEIVKIAEDEGVDIIIMGSHGKTNLKEI---LLGSVTENVIKKSNKPVLVVK  156 (160)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEEEEC-HHHHHHHHHHHTTCSEEEEESCCSSCCTTC---SSCHHHHHHHHHCCSCEEEEC
T ss_pred             HHHHHHHHHHHhcCCeEEEEEEecc-HHHHHhhhhhccccceEEeccCCCCccccc---ccCcHHHHHHhcCCCCEEEEc
Confidence            7778888888888999999999986 999999999999999999999999999999   999999999999999999999


Q ss_pred             CCC
Q 024982          200 YPD  202 (259)
Q Consensus       200 ~~~  202 (259)
                      ++.
T Consensus       157 ~~~  159 (160)
T d1mjha_         157 RKN  159 (160)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            763
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d3clsd1 c.26.2.3 (D:1-192) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure