Citrus Sinensis ID: 024985

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MGGRVIDVDSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDSLKGYSKREISELKEQMKKS
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEccccccHHHHHHHHHccccccccccccccccccccEEEEEEcccEEEEEcccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHcEEEEEEEcccccccccccHHHHccccccHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccHHccccccccEEEEEEEccccccccccccHcccHHHHHHcccccccHHHHHcccccccccEEEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHHEEEEEEEcccHHccccccHHHHHHccccHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mggrvidvdsmptspsnaeRTLVLVGrtgngksatgnsilGRRAFkskagssgvtkTCEMQRTmlkdgqvvnvidtpglfdssadsefVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTggneledndetledylgpecpkpLKEILQLCENRRVlfdnktkdAATRTEQVGKLISLVNSVIlenggqpysDEIFAELKKGATKLCDQQvevdslkgysKREISELKEQMKKS
Flexible Loop (DISEMBL)
mggrvidvdsmptspsnaerTLVLvgrtgngksatgnsilgrrafkskagssgvtkTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQqvevdslkgyskreiselkeqmkks
Low Complexity Region (SEG)
MGGRVIDVDSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGneledndetledYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDSLKGYSKREISELKEQMKKS
Disordered region (IsUnstruct)
*************************************************************RTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQV***********************
Disordered Region (DISOPRED)
*********************LVLVGRTGNGKSATGNSILGRRAFKSKAGSSG****CEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFA*************************************
Disordered Region (DISEMBL)
MGGRVIDVDSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAF**********KTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDSLKGYSKREIS*********
Disordered Region (DISPRO)
*****************AERTLVLVGRTGNGKSAT****LGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDSLKGYSKREISELKEQ****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGRVIDVDSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDSLKGYSKREISELKEQMKKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
P54120	353	Protein AIG1 OS=Arabidops	no	no	0.957	0.702	0.485	3e-59
O81025	463	Putative protein PHLOEM P	no	no	0.915	0.511	0.451	5e-59
Q9NUV9	329	GTPase IMAP family member	yes	no	0.891	0.702	0.342	2e-33
Q8K3K9	310	GTPase IMAP family member	yes	no	0.749	0.625	0.39	5e-32
Q8WWP7	306	GTPase IMAP family member	no	no	0.833	0.705	0.343	3e-28
Q99JY3	219	GTPase IMAP family member	no	no	0.702	0.831	0.372	5e-28
Q8NHV1	300	GTPase IMAP family member	no	no	0.752	0.65	0.358	9e-28
P70224	277	GTPase IMAP family member	no	no	0.810	0.758	0.344	4e-27
Q96F15	307	GTPase IMAP family member	no	no	0.795	0.671	0.328	2e-26
Q8K349	305	GTPase IMAP family member	no	no	0.741	0.629	0.391	7e-26

>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1

 Score =  228 bits (581), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 121/249 (48%), Positives = 170/249 (68%), Gaps = 1/249 (0%)

Query: 9   DSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG 68
           D    S  +    +VLVGRTGNGKSATGNSI+  + FKSK  SSGVT  C   + +  +G
Sbjct: 32  DEFSASQPHPVENIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEG 91

Query: 69  QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSL 128
            ++NVIDTPGLFD S  +EF+ KEIVKC+ +A  G+HAVLLV SVR R S+E    + +L
Sbjct: 92  PILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTL 151

Query: 129 ESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTK 188
           + LFG K+ DY+IVVFTGG+ LED+  TLEDYLG   P  LK +L LC  R +LFDNKTK
Sbjct: 152 QVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTK 211

Query: 189 DAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDSLKGYSKRE 248
           D   +T+QV +L+ L++ V  +N   PY+DE++  +K+   +   +Q E++S KG+S+ +
Sbjct: 212 DDEKKTKQVHELLKLIDLVRKQNNNIPYTDEMYHMIKEENERHKKEQEELES-KGHSEEQ 270

Query: 249 ISELKEQMK 257
           ++ L ++++
Sbjct: 271 LAALMKELQ 279

Arabidopsis thaliana (taxid: 3702)

>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1

 Score =  227 bits (579), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 107/237 (45%), Positives = 168/237 (70%)

Query: 20  RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79
           + +VLVGRTGNGKS+TGN++LG + FKSK  + GVT  CEM R  ++DG ++NVIDTPGL
Sbjct: 6   KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query: 80  FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY 139
            DS    + +S EI+ C+ MA++GIHAVLLV S R R S+E  + +++L+ +FG ++ DY
Sbjct: 66  CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query: 140 MIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGK 199
            IVVFTGG++LE++D+TL+DY    CP+ L ++L+LC  R+VLFDNK+KD   + EQV +
Sbjct: 126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185

Query: 200 LISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDSLKGYSKREISELKEQM 256
           L++ V +V  + GG PY+ ++  ++K+   +   ++  V   K  ++ E++E+++ +
Sbjct: 186 LLARVENVGEQTGGIPYTYQLHRKIKEENDERLREEERVIESKNRAEAELAEMQQNL 242

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/242 (34%), Positives = 142/242 (58%), Gaps = 11/242 (4%)

Query: 15  PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVI 74
           P N++  +VLVG+TG GKSATGNSILGR+ F S   +  +TK CE + +  K+ ++V V+
Sbjct: 26  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 84

Query: 75  DTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK 134
           DTPG+FD+   +   SKEI++CI +   G HA+LLV  +  R++EE   A   +  +FG+
Sbjct: 85  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGE 143

Query: 135 KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRT 194
           +   +MI++FT  ++L D +  L DYL  E P+ +++++ +  +R    +NK    A + 
Sbjct: 144 RARSFMILIFTRKDDLGDTN--LHDYLR-EAPEDIQDLMDIFGDRYCALNNKA-TGAEQE 199

Query: 195 EQVGKLISLVNSVILENGGQPYSDEIFA----ELKKGATKLCD-QQVEVDSLKGYSKREI 249
            Q  +L+ L+  V+ EN    Y++ ++     E++K    + +  +VE++  K   + E 
Sbjct: 200 AQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQTQAMQELHRVELEREKARIREEY 259

Query: 250 SE 251
            E
Sbjct: 260 EE 261

May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Homo sapiens (taxid: 9606)

>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1

 Score =  137 bits (346), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 78/200 (39%), Positives = 125/200 (62%), Gaps = 6/200 (3%)

Query: 22  LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
           +VL+G+TG GKS+TGNSILGR+AF S   +  +TK CE +   + DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCE-KGVSIWDGKELVVVDTPGIFD 91

Query: 82  SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMI 141
           +        KEI +C+ +   G HA+LLV  +   ++ E   A   L S+F KK   +MI
Sbjct: 92  TEVPDADTQKEITRCVALTSPGPHALLLVIPL-GCYTVEEHKATRKLLSMFEKKARRFMI 150

Query: 142 VVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLI 201
           ++ T  ++LED D  + +YL    P+ L+E++    NR  LF+NK    A + EQ  +L+
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-ETAPEVLQELIYEFRNRYCLFNNKA-SGAEQEEQKRQLL 206

Query: 202 SLVNSVILENGGQPYSDEIF 221
           +LV S++ ENGG+ ++++++
Sbjct: 207 TLVQSMVRENGGKYFTNKMY 226

May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Rattus norvegicus (taxid: 10116)

>sp|Q8WWP7|GIMA1_HUMAN GTPase IMAP family member 1 OS=Homo sapiens GN=GIMAP1 PE=1 SV=1

 Score =  125 bits (314), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 126/230 (54%), Gaps = 14/230 (6%)

Query: 1   MGGR--------VIDVDSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS 52
           MGGR        V  ++    S   + R L+LVGRTG GKSATGNSILG+R F S+ G++
Sbjct: 1   MGGRKMATDEENVYGLEENAQSRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGAT 60

Query: 53  GVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS-ADSEFVSKEIVKCIGMAKDGIHAVLLVF 111
            VT+ C    +   D   V V+DTP +F S  + ++   +E   C  ++  G HA+LLV 
Sbjct: 61  SVTRACTTG-SRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVT 119

Query: 112 SVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE 171
            +  RF+ +   A+  +  +FG+ V  +M++VFT   +L     +L DY+     + L+E
Sbjct: 120 QL-GRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG--SLHDYVSNTENRALRE 176

Query: 172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIF 221
           ++  C  R   FDN+      +  QV +L+ +V  ++LE+ G  YS+E++
Sbjct: 177 LVAECGGRVCAFDNRAT-GREQEAQVEQLLGMVEGLVLEHKGAHYSNEVY 225

May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells.

Homo sapiens (taxid: 9606)

>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1

 Score =  124 bits (312), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 113/188 (60%), Gaps = 6/188 (3%)

Query: 22  LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
           +VL+G+TG GKS+TGNSILG + F S   +  +TK CE +R    DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCE-KRVSTWDGKELVVVDTPGIFD 91

Query: 82  SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMI 141
           +        +EI + + +   G HA+LLV  +  R++ E   A   +  +FGK+   +MI
Sbjct: 92  TEVPDADTQREITRYVALTSPGPHALLLVVPL-GRYTVEEHKATQKILDMFGKQARRFMI 150

Query: 142 VVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLI 201
           ++ T  ++LED D  + +YL  + PK  +E++   +NR  LF+N+    A + EQ  +L+
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-EKAPKFFQEVMHEFQNRYCLFNNRA-SGAEKEEQKMQLL 206

Query: 202 SLVNSVIL 209
           +LV S+ L
Sbjct: 207 TLVQSMFL 214

Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium (By similarity). May play a role in regulating lymphocyte apoptosis.

Mus musculus (taxid: 10090)

>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1

 Score =  124 bits (310), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 118/201 (58%), Gaps = 6/201 (2%)

Query: 22  LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
           +VLVG+TG+GKSAT N+ILG   F S+  +  VTK C+      + G+ + V+DTPGLFD
Sbjct: 11  IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQ-GRDLLVVDTPGLFD 69

Query: 82  SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMI 141
           +    +   KEI +CI  +  G HA++LV  +  R++EE    +  ++++FGK    +M+
Sbjct: 70  TKESLDTTCKEISRCIISSCPGPHAIVLVL-LLGRYTEEEQKTVALIKAVFGKSAMKHMV 128

Query: 142 VVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDA-ATRTEQVGKL 200
           ++FT   ELE   ++  D++  +    LK I++ C NR   F N  K + A +  QV +L
Sbjct: 129 ILFTRKEELE--GQSFHDFIA-DADVGLKSIVKECGNRCCAFSNSKKTSKAEKESQVQEL 185

Query: 201 ISLVNSVILENGGQPYSDEIF 221
           + L+  ++  N G  +SD+I+
Sbjct: 186 VELIEKMVQCNEGAYFSDDIY 206

Homo sapiens (taxid: 9606)

>sp|P70224|GIMA1_MOUSE GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3

 Score =  121 bits (304), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 126/218 (57%), Gaps = 8/218 (3%)

Query: 22  LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
           L+LVGRTG GKSATGNSILG++ F S+ G+  VT++C +   M    Q V V+DTP +F 
Sbjct: 6   LILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWAGWQ-VEVVDTPDIFS 64

Query: 82  SS-ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYM 140
           S    ++    E  +C  ++  G HA+LLV  +  RF+ +   A+ +++ LFGK+V    
Sbjct: 65  SEIPRTDPGCVETARCFVLSAPGPHALLLVTQL-GRFTMQDSQALAAVKRLFGKQVMART 123

Query: 141 IVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKL 200
           +VVFT   +L    ++L+DY+     + L++++  C  R    +N+    + R  Q  +L
Sbjct: 124 VVVFTRQEDLA--GDSLQDYVHCTDNRALRDLVAECGGRVCALNNRAT-GSEREAQAEQL 180

Query: 201 ISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEV 238
           + +V  ++ E+GG  YS+E++  ++   T+  D Q +V
Sbjct: 181 LGMVACLVREHGGAHYSNEVYELVQD--TRCADPQDQV 216

May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells.

Mus musculus (taxid: 10090)

>sp|Q96F15|GIMA5_HUMAN GTPase IMAP family member 5 OS=Homo sapiens GN=GIMAP5 PE=1 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 125/213 (58%), Gaps = 7/213 (3%)

Query: 9   DSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG 68
           D++  +P      ++LVG+TG GKSATGNSILG+  F+SK  +  VT+TC++ +T   +G
Sbjct: 19  DNLSATPPALR--IILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQV-KTGTWNG 75

Query: 69  QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSL 128
           + V V+DTP +F+S AD++ + K I  C  ++  G H +LLV  +  RF+ +   AI  +
Sbjct: 76  RKVLVVDTPSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQL-GRFTAQDTVAIRKV 134

Query: 129 ESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTK 188
           + +FG     +++++FT   +L    + L+DY+       LK++++ CE R   F+N   
Sbjct: 135 KEVFGTGAMRHVVILFTHKEDL--GGQALDDYVANTDNCSLKDLVRECERRYCAFNNWGS 192

Query: 189 DAATRTEQVGKLISLVNSVILENGGQPYSDEIF 221
               R +Q  +L++++  +  E  G  +S+++F
Sbjct: 193 VEEQRQQQ-AELLAVIERLGREREGSFHSNDLF 224

Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence.

Homo sapiens (taxid: 9606)

>sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1

 Score =  117 bits (294), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/199 (39%), Positives = 113/199 (56%), Gaps = 7/199 (3%)

Query: 22  LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
           L+LVG+TG+GKSATGNSILGR+AF+SK  +  VT T + + T   +G+ + VIDTP +F 
Sbjct: 106 LLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQ-KGTREFEGKELEVIDTPDIFS 164

Query: 82  SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMI 141
                E  +K+I  C  +A  G HAVLLV  V  R++ E  A    L+ +FG  +  Y I
Sbjct: 165 PQNQPEATAKKI--CDLLASPGPHAVLLVIQV-GRYTAEDQAVARCLQEIFGNTILAYTI 221

Query: 142 VVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLI 201
           +VFT   +L +   +LE+Y+     K L  +   CE R   F+NK +    +  Q+ KL+
Sbjct: 222 LVFTRKEDLAEG--SLEEYIQENNNKSLDVLDVACERRHCGFNNKAQ-GDEQEAQLKKLM 278

Query: 202 SLVNSVILENGGQPYSDEI 220
             V  ++ EN G  Y+ E 
Sbjct: 279 EEVELILWENEGHCYTMEF 297

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
225460273	340	PREDICTED: protein AIG1 [Vitis vinifera]	1.0	0.761	0.752	1e-110
296089429	345	unnamed protein product [Vitis vinifera]	1.0	0.750	0.752	1e-110
255539412	339	aig1, putative [Ricinus communis] gi|223	1.0	0.764	0.752	1e-110
224146305	335	predicted protein [Populus trichocarpa]	0.996	0.770	0.725	1e-104
224136037	259	predicted protein [Populus trichocarpa]	0.942	0.942	0.746	1e-102
356526433	350	PREDICTED: protein AIG1-like [Glycine ma	0.980	0.725	0.692	5e-97
363814318	336	uncharacterized protein LOC100807910 [Gl	1.0	0.770	0.675	5e-96
4097585	344	NTGP4, partial [Nicotiana tabacum]	0.992	0.747	0.652	1e-94
388500386	335	unknown [Lotus japonicus]	0.996	0.770	0.633	8e-92
449464872	341	PREDICTED: protein AIG1-like [Cucumis sa	1.0	0.759	0.680	2e-91

>gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/259 (75%), Positives = 225/259 (86%)

Query: 1   MGGRVIDVDSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM 60
           MGG  ID +   T+PS+  RTLVLVGRTGNGKSATGNSILGR++FKS+A SSGVT TCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 61  QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEE 120
           QRT+L+DGQ+VNVIDTPGLFD SA+S+FV KEIVKCI +AKDG+HAVL+VFSVR RFS+E
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120

Query: 121 GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRR 180
             AA+HSL++LFG K+ DYMIVVFTGG+ELEDNDETLEDYLG ECP+PLK+ L LC+NR 
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 180

Query: 181 VLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDS 240
           VLFDNKTKD A + EQV KL+SLVNSVIL+NGGQPY+DE+F ELKKGA KL DQ  EVDS
Sbjct: 181 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDS 240

Query: 241 LKGYSKREISELKEQMKKS 259
           L+GYSKREI  LKEQM KS
Sbjct: 241 LEGYSKREILVLKEQMHKS 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/259 (75%), Positives = 225/259 (86%)

Query: 1   MGGRVIDVDSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM 60
           MGG  ID +   T+PS+  RTLVLVGRTGNGKSATGNSILGR++FKS+A SSGVT TCE+
Sbjct: 6   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 65

Query: 61  QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEE 120
           QRT+L+DGQ+VNVIDTPGLFD SA+S+FV KEIVKCI +AKDG+HAVL+VFSVR RFS+E
Sbjct: 66  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 125

Query: 121 GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRR 180
             AA+HSL++LFG K+ DYMIVVFTGG+ELEDNDETLEDYLG ECP+PLK+ L LC+NR 
Sbjct: 126 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 185

Query: 181 VLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDS 240
           VLFDNKTKD A + EQV KL+SLVNSVIL+NGGQPY+DE+F ELKKGA KL DQ  EVDS
Sbjct: 186 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDS 245

Query: 241 LKGYSKREISELKEQMKKS 259
           L+GYSKREI  LKEQM KS
Sbjct: 246 LEGYSKREILVLKEQMHKS 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/259 (75%), Positives = 221/259 (85%)

Query: 1   MGGRVIDVDSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM 60
           MGG  ID D   TSPSN  RT+VLVGRTGNGKSATGNS+LGR+AFKS+A SSGVT TCE+
Sbjct: 1   MGGSAIDDDWELTSPSNGVRTVVLVGRTGNGKSATGNSLLGRKAFKSRASSSGVTSTCEL 60

Query: 61  QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEE 120
           Q+T++ DGQV+NV+DTPGLFD SA+SEFV KEIVKCI MAKDGIHAVL+VFSVR RFS+E
Sbjct: 61  QQTVITDGQVINVVDTPGLFDFSAESEFVGKEIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 121 GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRR 180
             AA+ SL++LFG K+FDYMIVVFTGG+ELEDNDETLEDYLG ECP+PL+EIL LC+NR 
Sbjct: 121 EEAALRSLQTLFGSKIFDYMIVVFTGGDELEDNDETLEDYLGRECPQPLQEILTLCKNRL 180

Query: 181 VLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDS 240
           VLFDNKTKD   R EQV +L+SLVN VI ENGGQPY+DE+F ELK  A KL DQQ EVDS
Sbjct: 181 VLFDNKTKDEFKRAEQVHQLLSLVNLVIAENGGQPYTDELFVELKARAIKLRDQQEEVDS 240

Query: 241 LKGYSKREISELKEQMKKS 259
           LKGYSK EI ELKEQM +S
Sbjct: 241 LKGYSKGEILELKEQMHRS 259

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/259 (72%), Positives = 218/259 (84%), Gaps = 1/259 (0%)

Query: 1   MGGRVIDVDSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM 60
           MGG  +D D    SPSN  RT+VLVGRTGNGKSATGNSILGR+AFKS+A SSGVT +CE+
Sbjct: 1   MGGSAMDDDWEFASPSNGVRTIVLVGRTGNGKSATGNSILGRKAFKSRASSSGVTSSCEL 60

Query: 61  QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEE 120
           QRT+L+DGQ++NVIDTPGLFD SA SEFV +EIVKCI MAKDGIHAVL+VFSVR RFS+E
Sbjct: 61  QRTVLRDGQIINVIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 121 GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRR 180
             AA+ SL++LFG K+ DYMIVVFTGG+ELEDNDETLEDYLG ECP+PLKE+L LCENRR
Sbjct: 121 EEAALRSLQTLFGSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLTLCENRR 180

Query: 181 VLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDS 240
           VLF+NKTKD     EQV +L+SLVN VI +NGGQPYSDE+FAE++KG      QQ EVDS
Sbjct: 181 VLFNNKTKDVLKGVEQVQELLSLVNRVIEQNGGQPYSDELFAEIQKGEMNFRGQQEEVDS 240

Query: 241 LKG-YSKREISELKEQMKK 258
           LKG +S  EISEL+EQMK+
Sbjct: 241 LKGNFSIGEISELQEQMKR 259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136037|ref|XP_002327365.1| predicted protein [Populus trichocarpa] gi|222835735|gb|EEE74170.1| predicted protein [Populus trichocarpa]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/245 (74%), Positives = 211/245 (86%), Gaps = 1/245 (0%)

Query: 14  SPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNV 73
           SPSN  RT+VLVGRTGNGKSATGNSILG++AFKS+A SSGVT TCE+Q T+L DGQ++NV
Sbjct: 2   SPSNGVRTVVLVGRTGNGKSATGNSILGKKAFKSRASSSGVTSTCELQSTVLGDGQIINV 61

Query: 74  IDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFG 133
           IDTPGLFD SA SEFV +EIVKCI MAKDGIHAVL+VFSVR RFS+E  AA+ SL++LFG
Sbjct: 62  IDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFG 121

Query: 134 KKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATR 193
            K+ DYMIVVFTGG+ELEDNDETLEDYLG ECP+PLKE+L+LCENRRVLFDNKTKD   R
Sbjct: 122 SKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLKLCENRRVLFDNKTKDLFKR 181

Query: 194 TEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDSLKG-YSKREISEL 252
            EQ+ +L+SLVN VI +N GQPYSDE+FAE++KG     DQQ EV+SLKG  S REISEL
Sbjct: 182 AEQMQELLSLVNRVIEQNAGQPYSDELFAEIQKGEMNFRDQQEEVNSLKGNISIREISEL 241

Query: 253 KEQMK 257
           KEQM+
Sbjct: 242 KEQMQ 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max]

 Score =  359 bits (922), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 176/254 (69%), Positives = 210/254 (82%)

Query: 6   IDVDSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML 65
           ID D   TS SN  RT+VLVGRTGNGKSATGN+ILGR+AFKS+A SS V+ +CE++ T L
Sbjct: 20  IDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTEL 79

Query: 66  KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAI 125
            +GQ+VNVIDTPGLFD SA SEFV KEIVKCI +AKDGIHAV++VFSVR RF+EE   A+
Sbjct: 80  NNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETAL 139

Query: 126 HSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDN 185
            SL++LFG K+ DYMIVVFTGG+ELE+NDETLEDYLG ECP+PLKEIL LCENR VLFDN
Sbjct: 140 RSLQTLFGSKIVDYMIVVFTGGDELEENDETLEDYLGRECPEPLKEILVLCENRCVLFDN 199

Query: 186 KTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDSLKGYS 245
           KTKD   R  QV +L+S VN V+  NGG+PY+DE+F +LKKGA +L +QQ EVDSLKGYS
Sbjct: 200 KTKDEGKRFGQVQQLLSFVNMVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDSLKGYS 259

Query: 246 KREISELKEQMKKS 259
           K EI E K+QM+++
Sbjct: 260 KGEILEFKKQMQQT 273

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max]

 Score =  356 bits (914), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 175/259 (67%), Positives = 210/259 (81%)

Query: 1   MGGRVIDVDSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM 60
           MGG  I  D   TS SN  RT+VLVGRTGNGKSATGN+ILGR+ FKS+A SS V+ +CE+
Sbjct: 1   MGGSSIGDDWELTSSSNEGRTVVLVGRTGNGKSATGNTILGRKVFKSRASSSAVSTSCEL 60

Query: 61  QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEE 120
           Q T L DGQ+VNVIDTPGLFD S  SEFV KEIVKCI +AKDGIHAV++VFSVR RF+EE
Sbjct: 61  QTTELNDGQIVNVIDTPGLFDLSVGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEE 120

Query: 121 GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRR 180
              A+ SL++LFG K+ DYMIVVFTGG+ELE+N ETLEDYLG ECP+PLKEIL LC+NR 
Sbjct: 121 EETALRSLQTLFGSKIVDYMIVVFTGGDELEENAETLEDYLGRECPEPLKEILVLCDNRC 180

Query: 181 VLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDS 240
           VLFDNKTKD   R  QV +L+S VN+V+  NGG+PY+DE+F +LKKGA +L +QQ EVDS
Sbjct: 181 VLFDNKTKDEGKRFGQVQQLLSFVNTVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDS 240

Query: 241 LKGYSKREISELKEQMKKS 259
           LKGYSK EI + K+QM+++
Sbjct: 241 LKGYSKGEILKFKKQMQQT 259

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4097585|gb|AAD09518.1| NTGP4, partial [Nicotiana tabacum]

 Score =  351 bits (901), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 169/259 (65%), Positives = 210/259 (81%), Gaps = 2/259 (0%)

Query: 1   MGGRVIDVDSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM 60
           MGG  I  D      +N  RTLVLVGRTGNGKSATGNSILGR+AF+S + S+GVT TCE+
Sbjct: 6   MGGSAISDD--WEFAANGARTLVLVGRTGNGKSATGNSILGRKAFRSMSSSAGVTSTCEL 63

Query: 61  QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEE 120
           QRT+L+DGQ+++VIDTPGLFD SA+ EF+  EIVKCI MAKDGIHAVL+V SVR RFS E
Sbjct: 64  QRTVLEDGQILDVIDTPGLFDFSAEPEFIGNEIVKCINMAKDGIHAVLVVLSVRTRFSRE 123

Query: 121 GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRR 180
             AA+ SL   FG K+ DYM++VFTGG++LEDN+ETLEDYLG +CP+PLK+IL +C NRR
Sbjct: 124 EQAAVQSLREFFGGKISDYMVLVFTGGDDLEDNEETLEDYLGRDCPEPLKDILAMCGNRR 183

Query: 181 VLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDS 240
           VLFDNK+KD   + +Q+ +L+SLVN V+  NGG+PY+D++F ELKKGA KL +Q  EV++
Sbjct: 184 VLFDNKSKDHLKKADQLKQLLSLVNVVVENNGGKPYTDDLFKELKKGAIKLRNQATEVNN 243

Query: 241 LKGYSKREISELKEQMKKS 259
           L GYSK+EI ELKEQM+KS
Sbjct: 244 LVGYSKQEILELKEQMQKS 262

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500386|gb|AFK38259.1| unknown [Lotus japonicus]

 Score =  342 bits (877), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 164/259 (63%), Positives = 208/259 (80%), Gaps = 1/259 (0%)

Query: 1   MGGRVIDVDSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM 60
           MGG   D D   TS +N  RT+V VGRTGNGKSATGNSILG++ FKS+A S GVT +CE 
Sbjct: 1   MGGNSFDEDWELTSSANEVRTVVSVGRTGNGKSATGNSILGKKVFKSRASSVGVTSSCES 60

Query: 61  QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEE 120
             T+  DGQ VNVIDTPGLFD SA S+FV KEIV CI +AKDGIHA+++VFSVR RFS+E
Sbjct: 61  H-TIELDGQTVNVIDTPGLFDISAGSDFVGKEIVNCINLAKDGIHAIIVVFSVRTRFSQE 119

Query: 121 GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRR 180
              A+ SL++LFG K++DY +VVFTGG+ELE+ D+TLEDYLG +CP+PLK++L LCENRR
Sbjct: 120 EATALRSLQTLFGDKIYDYTVVVFTGGDELEEEDQTLEDYLGCDCPEPLKDLLSLCENRR 179

Query: 181 VLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDS 240
           +LFDNKTKD   R+EQV +L S VN V+ +NGG+PY+D++FAELKKGA KL +QQ +V+S
Sbjct: 180 LLFDNKTKDERKRSEQVQQLFSFVNMVLSQNGGRPYTDDLFAELKKGALKLHNQQSQVNS 239

Query: 241 LKGYSKREISELKEQMKKS 259
           L+G+S +EI E K+Q K++
Sbjct: 240 LEGHSNKEILEYKKQAKQA 258

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464872|ref|XP_004150153.1| PREDICTED: protein AIG1-like [Cucumis sativus] gi|449520867|ref|XP_004167454.1| PREDICTED: protein AIG1-like [Cucumis sativus]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 179/263 (68%), Positives = 217/263 (82%), Gaps = 4/263 (1%)

Query: 1   MGGRVIDVDSMP--TSPSN--AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTK 56
           MGG  I+ D     TSP+N  + RT+VLVGRTGNGKSATGNSILGR+AFKS+A SSGVT 
Sbjct: 1   MGGSAIEEDWELDLTSPTNGRSARTVVLVGRTGNGKSATGNSILGRKAFKSRACSSGVTV 60

Query: 57  TCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR 116
           T E+Q T+L DGQ ++VIDTPG+FD SA S+FV KEIVKCI MAKDGIHAVL+VFSVR R
Sbjct: 61  TSELQTTVLSDGQEIDVIDTPGMFDFSAGSDFVGKEIVKCIDMAKDGIHAVLVVFSVRTR 120

Query: 117 FSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC 176
           FS E  AA+ SL++LFG K+ +YMIVVFTGG+ELE+N+ETLEDYLG  CP PLK+IL LC
Sbjct: 121 FSLEEEAALRSLQTLFGSKIVNYMIVVFTGGDELEENEETLEDYLGRSCPDPLKDILALC 180

Query: 177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQV 236
           +NR VLFDNKTKD   +  QV +L+SLVN ++++NGGQPYSDE+F+ELK GA KL DQQ 
Sbjct: 181 QNRCVLFDNKTKDEGRKVGQVQQLLSLVNGIVMQNGGQPYSDELFSELKAGAMKLRDQQK 240

Query: 237 EVDSLKGYSKREISELKEQMKKS 259
           EVDSL+GY+++E+ ELKEQM +S
Sbjct: 241 EVDSLEGYTRQELKELKEQMHRS 263

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
TAIR|locus:2009041	342	AT1G33970 [Arabidopsis thalian	0.996	0.754	0.571	2.2e-73
TAIR|locus:2203817	311	AT1G33950 [Arabidopsis thalian	0.926	0.771	0.462	1.8e-55
TAIR|locus:2203807	353	AIG1 "AVRRPT2-INDUCED GENE 1"	0.957	0.702	0.457	9.9e-55
TAIR|locus:2203832	336	AT1G33930 [Arabidopsis thalian	0.972	0.75	0.437	6.3e-53
TAIR|locus:2203797	326	AT1G33900 [Arabidopsis thalian	0.976	0.776	0.425	5.6e-52
TAIR|locus:2140568	336	AT4G09950 [Arabidopsis thalian	0.961	0.741	0.435	1.5e-51
TAIR|locus:2140558	394	AT4G09940 [Arabidopsis thalian	0.915	0.601	0.458	3.1e-51
TAIR|locus:2039528	463	PP2-A3 "phloem protein 2-A3" [	0.915	0.511	0.426	8.3e-51
TAIR|locus:2203802	334	AT1G33890 [Arabidopsis thalian	0.953	0.739	0.411	3.6e-50
TAIR|locus:2203792	301	AT1G33910 [Arabidopsis thalian	0.942	0.810	0.412	1.3e-45

TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
 Identities = 148/259 (57%), Positives = 190/259 (73%)

Query:     1 MGGRVIDVDSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM 60
             MGG +++ D    S SN +RTLVLVGRTGNGKSATGNSILGR+AF+S+A + GVT TCE 
Sbjct:     6 MGGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSILGRKAFRSRARTVGVTSTCES 65

Query:    61 QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEE 120
             QR + +DG ++NV+DTPGLFD S  ++F+ KEIV+CI +A+DGIHA+LLVFSVR R +EE
Sbjct:    66 QRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISLAEDGIHAILLVFSVR-RLAEE 124

Query:   121 GGAAIHSLESLFGKKVFDYMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRR 180
                 +  L++LFG K+ DYMIVVFTGG            YL   CP+ LKEIL +C+NR 
Sbjct:   125 EQTVLSFLQALFGSKIADYMIVVFTGGDELEENEETLEEYLADYCPEFLKEILGICDNRL 184

Query:   181 VLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDS 240
             VLF+NKT D   + EQV KL+SLV SV+ +N G+PYSDE+F EL++ A KL DQ+ EV+ 
Sbjct:   185 VLFNNKTTDKVKKAEQVQKLLSLVESVVKQNNGKPYSDELFHELQEEAIKLRDQKKEVEL 244

Query:   241 LKGYSKREISELKEQMKKS 259
             L+GYS  EI E K+Q+  S
Sbjct:   245 LQGYSNNEIDEFKKQIDMS 263

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 112/242 (46%), Positives = 162/242 (66%)

Query:    14 SPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNV 73
             S   AE  +VLVGRTGNGKSATGNS++G++ F SKA +SGVT  C+    + KDG  +NV
Sbjct:    12 SSKQAEN-IVLVGRTGNGKSATGNSLIGKKVFASKAHASGVTMKCQTHGVVTKDGHKINV 70

Query:    74 IDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFG 133
             IDTPGLFD S  +E++SKEIV+C+ +A+ GIHAVLLV S R R ++E    + +L++LFG
Sbjct:    71 IDTPGLFDLSVSAEYISKEIVRCLTLAEGGIHAVLLVLSARTRITQEEENTLRTLQALFG 130

Query:   134 KKVFDYMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFDNKTKDAATR 193
              ++ DY++VVFTGG            YLG +CP  +KE++++  NR+V+ DNKT D   +
Sbjct:   131 SQILDYVVVVFTGGDVLEECKETLEDYLGRDCPTFIKEVMRMSSNRKVVIDNKTHDEGKK 190

Query:   194 TEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDSLKGYSKREISELK 253
              EQV KL+SLV+ +     G+ Y+D+ +  +K+ + KL     E++S K YS+   +E+K
Sbjct:   191 AEQVHKLLSLVDDIRRSKCGEAYTDDTYHMIKEESEKLRKHHEELES-KNYSEECAAEMK 249

Query:   254 EQ 255
              Q
Sbjct:   250 NQ 251

GO:0005525 "GTP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 114/249 (45%), Positives = 161/249 (64%)

Query:     9 DSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG 68
             D    S  +    +VLVGRTGNGKSATGNSI+  + FKSK  SSGVT  C   + +  +G
Sbjct:    32 DEFSASQPHPVENIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEG 91

Query:    69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSL 128
              ++NVIDTPGLFD S  +EF+ KEIVKC+ +A  G+HAVLLV SVR R S+E    + +L
Sbjct:    92 PILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTL 151

Query:   129 ESLFGKKVFDYMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFDNKTK 188
             + LFG K+ DY+IVVFTGG            YLG   P  LK +L LC  R +LFDNKTK
Sbjct:   152 QVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTK 211

Query:   189 DAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDSLKGYSKRE 248
             D   +T+QV +L+ L++ V  +N   PY+DE++  +K+   +   +Q E++S KG+S+ +
Sbjct:   212 DDEKKTKQVHELLKLIDLVRKQNNNIPYTDEMYHMIKEENERHKKEQEELES-KGHSEEQ 270

Query:   249 ISELKEQMK 257
             ++ L ++++
Sbjct:   271 LAALMKELQ 279

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=IEP;ISS

GO:0006897 "endocytosis" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 111/254 (43%), Positives = 166/254 (65%)

Query:     6 IDVDSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML 65
             +D   +P S S   + +VLVGRTGNGKSATGNSI+GR+ F+SK  + GVT  C+  R + 
Sbjct:    23 VDRWELP-SASEPVKNVVLVGRTGNGKSATGNSIIGRKVFESKYQAVGVTTRCKTFRAVT 81

Query:    66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAI 125
              DG ++NVIDTPGLFD +  +EF+SKEIV C+ +A++G+HAV+LV S+  R S+E   A+
Sbjct:    82 PDGPIINVIDTPGLFDLAVSAEFISKEIVNCLILAREGLHAVVLVLSLSTRISQEEENAL 141

Query:   126 HSLESLFGKKVFDYMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFDN 185
              +L+ LFG K+ DY+IVVFT G            YL   CP+ LK +L+LC  RRV+FDN
Sbjct:   142 CTLQMLFGGKIVDYLIVVFTCGDMLEDRNMTLEDYLSNGCPEFLKNVLRLCGGRRVVFDN 201

Query:   186 KTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDSLKGYS 245
             +TKD   + +QV +L+  V ++  E GG P++D +   +++ A ++  ++ E++  K  +
Sbjct:   202 RTKDEGVKAKQVQQLLVHVAAIEKETGGNPFTDTMHRRIQEEAARVKREEKEIEE-KNIA 260

Query:   246 KREISELKEQMKKS 259
               E + LK+Q+  S
Sbjct:   261 DEEKAALKKQLDMS 274

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 108/254 (42%), Positives = 164/254 (64%)

Query:     1 MGGRVIDVDSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM 60
             M G     D    S S   + +VLVGRTGNGKSATGNS++G++ F+S+  ++GVT  CE 
Sbjct:     1 MAGLEDTTDLRLPSASEPIKNIVLVGRTGNGKSATGNSLIGKQVFRSETRATGVTMKCET 60

Query:    61 QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEE 120
                +   G  +NVIDTPGLFD S  +E++S+EI+ C+ +A+DG+HAV+LV SVR R S+E
Sbjct:    61 CVAVTPCGTGINVIDTPGLFDLSVSAEYLSQEIINCLVLAEDGLHAVVLVLSVRTRISQE 120

Query:   121 GGAAIHSLESLFGKKVFDYMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRR 180
               A +++L+ +FG ++ DY++V+FTGG            YL   CP+ LK +L+LC  RR
Sbjct:   121 EEATLNTLQVIFGSQIIDYLVVLFTGGDELEANNMTLDDYLSKGCPEFLKTVLRLCGGRR 180

Query:   181 VLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDS 240
             +LFDN+T D   + +QV +L++ V ++     G P++DE+  +++K A  L +QQ EV+S
Sbjct:   181 ILFDNRTTDEGKKVKQVQELLAHVAAIEKSTSGIPFTDEMHRKIQKEAETLREQQKEVES 240

Query:   241 LKGYSKREISELKE 254
              K  +  EI + K+
Sbjct:   241 -KDLAAAEIEKWKK 253

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2140568 AT4G09950 [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 112/257 (43%), Positives = 174/257 (67%)

Query:     8 VDSMPTSPSN---AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTM 64
             VDS   +  N    ERTLVL+GRTGNGKSATGNSILG+  F+SKA    +TK C++ ++ 
Sbjct:     3 VDSSALNVENDWKPERTLVLLGRTGNGKSATGNSILGKTMFQSKARGKFITKECKLHKSK 62

Query:    65 LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAA 124
             L +G  +NVIDTPGLF +S+ ++F  +EIV+C+ +AK GI AVLLVFS+RNR +EE  + 
Sbjct:    63 LPNGLTINVIDTPGLFSASSTTDFTIREIVRCLLLAKGGIDAVLLVFSLRNRLTEEEQST 122

Query:   125 IHSLESLFGKKVFDYMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFD 184
             + +L+ LFG ++ DY+IVVFT              YL  +CP+  +EIL+ C++R+VLFD
Sbjct:   123 LRTLKILFGSQIVDYIIVVFTN-EDALECGETLDDYL-EDCPE-FQEILEECDDRKVLFD 179

Query:   185 NKTKDAATRTE-QVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDSLKG 243
             N      ++ + QV  L++LV  +  +N G+ Y  ++  EL++    + ++Q +++ +KG
Sbjct:   180 NSYNAPVSKKDRQVHDLLNLVEQISKKNNGKSYMADLSHELRENEATIKEKQKQIEEMKG 239

Query:   244 YS-KREISELKEQMKKS 259
             +S K+EIS++K++++KS
Sbjct:   240 WSSKQEISQMKKELEKS 256

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2140558 AT4G09940 [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 111/242 (45%), Positives = 164/242 (67%)

Query:    20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79
             RTL+LVGR+GNGKSATGNSILGR+AFKSK  +SGVT  CE+Q + L +GQ++NVIDTPGL
Sbjct:    48 RTLLLVGRSGNGKSATGNSILGRKAFKSKGRASGVTTACELQSSTLPNGQIINVIDTPGL 107

Query:    80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY 139
             F  S  +EF  +EI++C  + K+GI AVLLVFS++NR +EE  +A+ +L+ LFG K+ DY
Sbjct:   108 FSLSPSTEFTCREILRCFSLTKEGIDAVLLVFSLKNRLTEEEKSALFALKILFGSKIVDY 167

Query:   140 MIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFDNKTK-DAATRTEQVG 198
             MIVVFT              YL  + P   KEIL+ C +R+VLF N++    + + +QV 
Sbjct:   168 MIVVFTNEDSLEDDGDTFEEYL-EDSPD-FKEILEPCNDRKVLFRNRSNAPVSQKAKQVQ 225

Query:   199 KLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDSLKG-YSKREISELKEQMK 257
             +L++ V  +   NG + Y  ++  E+++  T    +Q E+  +KG Y+++E+ ++K+ M+
Sbjct:   226 ELLNYVEEIARLNG-KSYMADLSHEIRENETAFQIKQQEILEMKGLYTRQEMLQMKKDME 284

Query:   258 KS 259
             KS
Sbjct:   285 KS 286

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 101/237 (42%), Positives = 156/237 (65%)

Query:    20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79
             + +VLVGRTGNGKS+TGN++LG + FKSK  + GVT  CEM R  ++DG ++NVIDTPGL
Sbjct:     6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query:    80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY 139
              DS    + +S EI+ C+ MA++GIHAVLLV S R R S+E  + +++L+ +FG ++ DY
Sbjct:    66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query:   140 MIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGK 199
              IVVFTGG            Y    CP+ L ++L+LC  R+VLFDNK+KD   + EQV +
Sbjct:   126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185

Query:   200 LISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDSLKGYSKREISELKEQM 256
             L++ V +V  + GG PY+ ++  ++K+   +   ++  V   K  ++ E++E+++ +
Sbjct:   186 LLARVENVGEQTGGIPYTYQLHRKIKEENDERLREEERVIESKNRAEAELAEMQQNL 242

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0006897 "endocytosis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2203802 AT1G33890 [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 102/248 (41%), Positives = 160/248 (64%)

Query:    10 SMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ 69
             S   S   A + +VLVGRTGNGKSATGNS++G+  F S+A ++GVTKTC+  + +   G 
Sbjct:     4 SEQASAYKAVKNIVLVGRTGNGKSATGNSLIGKDVFVSEAKATGVTKTCQTYKAVTPGGS 63

Query:    70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLE 129
              +NVIDTPGLFD S  +EF+SKEI+ C+ +A+ G+H V+LV SVR R ++E    + +L+
Sbjct:    64 RINVIDTPGLFDLSVSAEFISKEIINCLRLAEGGLHVVVLVLSVRTRITQEEENTLSTLQ 123

Query:   130 SLFGKKVFDYMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFDNKTKD 189
              LFG ++ DY+IV+FTGG            Y    CP  LK +L LC++R+V+F+N TKD
Sbjct:   124 VLFGNEILDYLIVLFTGGDELEANNQTLDDYFHQGCPYFLKTVLGLCDDRKVMFNNMTKD 183

Query:   190 AATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDSLKGYSKREI 249
                + EQV + ++LV  V   N G+P+  +++ E+K+    L  Q+  V++     + E+
Sbjct:   184 KHKKVEQVQQFLALVAKVEERNEGKPFRGKMYLEIKEETEWLKKQKKAVEA-SNLGEAEL 242

Query:   250 SELKEQMK 257
             +++K++++
Sbjct:   243 AKMKKELQ 250

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203792 AT1G33910 [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 104/252 (41%), Positives = 156/252 (61%)

Query:     9 DSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG 68
             D    S S   R +VLVG TGNGKS+TGNS++G+  F  +       KTC+  +T+  DG
Sbjct:     3 DRAQPSASEPVRNIVLVGPTGNGKSSTGNSLIGKEVFILETVEC---KTCKA-KTL--DG 56

Query:    69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSL 128
             Q++NVIDTPGLFD S  +++++KEI+ C+ +   G+HAV+LV SV     +E  AA++ L
Sbjct:    57 QIINVIDTPGLFDLSVSTDYMNKEIINCLTLTDGGLHAVVLVLSVGTDILKEEEAALNKL 116

Query:   129 ESLFGKKVFDYMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFDNKTK 188
             + LFG K+ DY++V+FTGG            YL   CP+ LK +L+LC  RRVLF+NKT 
Sbjct:   117 QLLFGSKIVDYLVVLFTGGDVLEKENKTLDDYLSRGCPEFLKTVLRLCGGRRVLFNNKTT 176

Query:   189 DAATRTEQVGKLISLVNSVILENGGQP-YSDEIFAELKKGATKLCDQQVEVDSLKGYSKR 247
             D   + EQV +L++ V ++   NGG+  +++E     K+    L +Q++EV S K     
Sbjct:   177 DEVKKIEQVKQLLAHVEAIENLNGGKALFTEENDLNEKRQGEMLMEQEMEVQSKKP-ENT 235

Query:   248 EISELKEQMKKS 259
             E+ E+K+Q++ S
Sbjct:   236 EVEEMKKQLEIS 247

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
pfam04548	211	pfam04548, AIG1, AIG1 family	4e-95
cd01852	201	cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)	6e-91
cd01853	248	cd01853, Toc34_like, Translocon at the Outer-envel	3e-11
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	6e-07
TIGR00993	763	TIGR00993, 3a0901s04IAP86, chloroplast protein imp	2e-06
cd00880	161	cd00880, Era_like, E	5e-06
TIGR00991	313	TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch	4e-05
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	6e-05
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	3e-04
cd01850	275	cd01850, CDC_Septin, CDC/Septin GTPase family	4e-04
pfam00735	280	pfam00735, Septin, Septin	6e-04
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	0.001

>gnl|CDD|218141 pfam04548, AIG1, AIG1 family

 Score =  277 bits (711), Expect = 4e-95
 Identities = 111/216 (51%), Positives = 162/216 (75%), Gaps = 5/216 (2%)

Query: 20  RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79
             +VLVG+TGNGKSATGNSILGR+AF+SK  + GVTKTC++      DG+++NVIDTPGL
Sbjct: 1   LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTW-DGRIINVIDTPGL 59

Query: 80  FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY 139
           FD S  ++F+SKEI++C+ +A+ G HAVLLV S+  RF+EE   A+ +L+ LFG K+ DY
Sbjct: 60  FDLSVSNDFISKEIIRCLLLAEPGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKILDY 118

Query: 140 MIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGK 199
           MIVVFT  ++LED+   L+DYL   CP+ LKE+L+ C  R VLF+NK  D   + EQV +
Sbjct: 119 MIVVFTRKDDLEDDS--LDDYLSDGCPEFLKEVLRECGGRYVLFNNK-ADGEEKEEQVQQ 175

Query: 200 LISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQ 235
           L++LV +++ ENGG+PY+++++ ++K+   +L ++Q
Sbjct: 176 LLALVEAIVKENGGKPYTNDLYEKIKEEGERLREKQ 211

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211

>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)

 Score =  266 bits (683), Expect = 6e-91
 Identities = 101/207 (48%), Positives = 146/207 (70%), Gaps = 6/207 (2%)

Query: 20  RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79
             LVLVG+TGNGKSATGN+ILGR+ F+SK  +SGVTKTC+ +  +  DG+ VNVIDTPGL
Sbjct: 1   LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVW-DGRRVNVIDTPGL 59

Query: 80  FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY 139
           FD+S   E +SKEI++C+ ++  G HA LLV  +  RF+EE   A+  L+ LFG+KV D+
Sbjct: 60  FDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPLG-RFTEEEEQAVEELQELFGEKVLDH 118

Query: 140 MIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGK 199
            IV+FT G++LE    +LEDYL  +  + LK +L+ C  R V F+NK K    + +QV +
Sbjct: 119 TIVLFTRGDDLE--GGSLEDYLE-DSCEALKRLLEKCGGRYVAFNNKAKGRE-QEQQVKE 174

Query: 200 LISLVNSVILENGGQPYSDEIFAELKK 226
           L++ V  ++ ENGG+PY++E++ E ++
Sbjct: 175 LLAKVEEMVRENGGKPYTNEMYEEAEE 201

This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201

>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like)

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 11/130 (8%)

Query: 21  TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
           T++++G+TG GKS+T NSI G R     A  S   +  E+ RT+  DG  +N+IDTPGL 
Sbjct: 33  TILVLGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTV--DGFKLNIIDTPGLL 90

Query: 81  DSSADSEFVSKEIVKCIG--MAKDGIHAVLLV---FSVRNRFSEEGGAAIHSLESLFGKK 135
           +S    + V+++I+  I   + K  I  VL V      R    +     + ++   FG  
Sbjct: 91  ESQ--DQRVNRKILSIIKRFLKKKTIDVVLYVDRLDMYRVDNLDV--PLLRAITDSFGPS 146

Query: 136 VFDYMIVVFT 145
           ++   IVV T
Sbjct: 147 IWRNAIVVLT 156

The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 13/125 (10%)

Query: 23  VLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQV-VNVIDTPGLFD 81
           V+VGR G GKS+  N++LG       +   G T+  ++    L  G+V + ++DTPGL +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGE-VGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDE 59

Query: 82  SSA-DSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYM 140
                 E +++ +++       G   +LLV    +R SEE  A +  L  L  + +   +
Sbjct: 60  FGGLGREELARLLLR-------GADLILLVVDSTDRESEE-DAKLLILRRLRKEGI--PI 109

Query: 141 IVVFT 145
           I+V  
Sbjct: 110 ILVGN 114

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 21  TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
            ++++G++G GKSAT NSI G   F + A   G T   E++  +   G  + VIDTPGL 
Sbjct: 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGLK 177

Query: 81  DSSADSEFVSK 91
            S++D     K
Sbjct: 178 SSASDQSKNEK 188

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 33/124 (26%), Positives = 46/124 (37%), Gaps = 13/124 (10%)

Query: 23  VLVGRTGNGKSATGNSILGRRAFK-SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
            + GR   GKS+  N++LG+     S     G T+    +   L     V +IDTPGL +
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIVSPI--PGTTRDPVRKEWELLPLGPVVLIDTPGLDE 58

Query: 82  SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMI 141
                    +E  +      D    VLLV        EE   A   L    GK V    +
Sbjct: 59  EGGLGRERVEEARQVA----DRADLVLLVVDSDLTPVEE--EAKLGLLRERGKPV----L 108

Query: 142 VVFT 145
           +V  
Sbjct: 109 LVLN 112

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase)

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 11/129 (8%)

Query: 21  TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
           T++++G+ G GKS+T NSI+G R     A  S   +   + RT  + G  +N+IDTPGL 
Sbjct: 40  TILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT--RAGFTLNIIDTPGLI 97

Query: 81  DSSADSEFVSKEIVK--CIGMAKDGIHAVLLVFSVRN--RFSEEGGAAIHSLESLFGKKV 136
           +    ++  +  I+K   +G   D    VLL     +  R     G  I ++   FGK +
Sbjct: 98  EGGYIND-QAVNIIKRFLLGKTID----VLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI 152

Query: 137 FDYMIVVFT 145
           +   +VV T
Sbjct: 153 WRKSLVVLT 161

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 9/125 (7%)

Query: 21  TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
            + LVGR   GKS   N++ G +     +   G T+  +    +L  G+ + ++DTPGL 
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIV-SDYPGTTR--DPILGVLGLGRQIILVDTPGLI 57

Query: 81  DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYM 140
           + +++ + V +   + +   ++    +LLV       +E+    +  LE L  K     +
Sbjct: 58  EGASEGKGV-EGFNRFLEAIRE-ADLILLVVDASEGLTEDDEEILEELEKLPKKP----I 111

Query: 141 IVVFT 145
           I+V  
Sbjct: 112 ILVLN 116

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 23/123 (18%)

Query: 21  TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVT----KTCEMQRTMLKDGQVVNVIDT 76
            L +VG    GKS   N++LG          +GVT        ++  +LK    V ++DT
Sbjct: 2   LLAVVGEFSAGKSTLLNALLGEEVLP-----TGVTPTTAVITVLRYGLLKG---VVLVDT 53

Query: 77  PGLFDSSADS--EFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK 134
           PGL +S+ +   E     + +          AV+ V S     +E     +  +    GK
Sbjct: 54  PGL-NSTIEHHTEITESFLPRA--------DAVIFVLSADQPLTESEREFLKEILKWSGK 104

Query: 135 KVF 137
           K+F
Sbjct: 105 KIF 107

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 9/85 (10%)

Query: 21 TLVLVGRTGNGKSATGNSILGRRAFKSK---AGSSGVTKTCEMQRTM--LKDGQV---VN 72
           +++VG +G GKS   N++ G + + SK   A    +TKT E++ +   L++  V   + 
Sbjct: 6  NIMVVGESGLGKSTFINTLFGTKLYPSKYPPAPGEHITKTVEIKISKAELEENGVKLKLT 65

Query: 73 VIDTPGLFDSSADSEFVSKEIVKCI 97
          VIDTPG  D+  ++    K IV  I
Sbjct: 66 VIDTPGFGDNI-NNSDCWKPIVDYI 89

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275

>gnl|CDD|201420 pfam00735, Septin, Septin

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 21 TLVLVGRTGNGKSATGNSILGR-----RAFKSKAGSSGVTKTCEMQRTMLKDGQV---VN 72
          TL++VG +G GK+   N++        R     +     T   +     +++  V   + 
Sbjct: 6  TLMVVGESGLGKTTLINTLFLTDLIPERGIPGPSEKIKKTVEIKATTVEIEEDGVKLNLT 65

Query: 73 VIDTPGLFDSSADSEFVSKEIVKCI 97
          VIDTPG F  + D+    K IV+ I
Sbjct: 66 VIDTPG-FGDAIDNSNCWKPIVEYI 89

Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerise to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis. Length = 280

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 11/124 (8%)

Query: 19  ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQV-VNVIDTP 77
           E  +V+VG    GKS   N +LG +   ++    G T+                N++DT 
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYK-PGTTRNYVTTVIEEDGKTYKFNLLDTA 59

Query: 78  GLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLES-----LF 132
           G  D  A      + +   + +  D    V+LV  V     ++    IH  ES     L 
Sbjct: 60  GQEDYDAIRRLYYRAVESSLRVF-DI---VILVLDVEEILEKQTKEIIHHAESGVPIILV 115

Query: 133 GKKV 136
           G K+
Sbjct: 116 GNKI 119

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	100.0
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	100.0
COG1159	298	Era GTPase [General function prediction only]	99.94
COG0218	200	Predicted GTPase [General function prediction only	99.91
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.9
COG1160	444	Predicted GTPases [General function prediction onl	99.9
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.89
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.88
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.88
COG1160	444	Predicted GTPases [General function prediction onl	99.88
PRK15494	339	era GTPase Era; Provisional	99.87
PRK00089	292	era GTPase Era; Reviewed	99.87
PRK12298	390	obgE GTPase CgtA; Reviewed	99.85
PRK12299	335	obgE GTPase CgtA; Reviewed	99.84
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.83
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.83
PRK00093	435	GTP-binding protein Der; Reviewed	99.83
PRK12297	424	obgE GTPase CgtA; Reviewed	99.83
COG0486	454	ThdF Predicted GTPase [General function prediction	99.82
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.82
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.82
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.82
PRK03003	472	GTP-binding protein Der; Reviewed	99.82
COG1084	346	Predicted GTPase [General function prediction only	99.82
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.82
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.82
PRK03003	472	GTP-binding protein Der; Reviewed	99.82
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.82
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.82
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.81
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.81
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.81
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.81
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.81
COG3596	296	Predicted GTPase [General function prediction only	99.81
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.8
PRK12296	500	obgE GTPase CgtA; Reviewed	99.8
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.8
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.8
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.79
PRK00093	435	GTP-binding protein Der; Reviewed	99.79
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.79
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.79
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.79
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.79
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.79
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.78
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.78
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.78
PRK11058	426	GTPase HflX; Provisional	99.78
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.78
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.78
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.78
PRK04213	201	GTP-binding protein; Provisional	99.78
cd00881	189	GTP_translation_factor GTP translation factor fami	99.78
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.78
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.78
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.77
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.77
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.77
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.77
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.77
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.77
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.77
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.77
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.77
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.77
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.77
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.77
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.77
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.77
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.77
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.77
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.77
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.76
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.76
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.76
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.76
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.76
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.76
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.76
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.76
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.76
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.76
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.76
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.76
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.76
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.76
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.76
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.76
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.76
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.75
PLN03110	216	Rab GTPase; Provisional	99.75
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.75
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.75
PLN00223	181	ADP-ribosylation factor; Provisional	99.75
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.75
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.75
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.75
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.75
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.75
PLN03118	211	Rab family protein; Provisional	99.75
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.75
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.74
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.74
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.74
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.74
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.74
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.74
COG2262	411	HflX GTPases [General function prediction only]	99.74
PTZ00133	182	ADP-ribosylation factor; Provisional	99.74
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.74
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.74
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.73
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.73
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.73
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.73
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.73
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.73
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.73
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.73
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.73
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.73
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.73
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.73
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.73
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.73
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.73
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.73
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.72
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.72
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.72
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.72
PTZ00369	189	Ras-like protein; Provisional	99.72
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.72
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.72
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.72
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.71
CHL00071	409	tufA elongation factor Tu	99.71
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.71
PLN03108	210	Rab family protein; Provisional	99.71
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.71
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.71
CHL00189	742	infB translation initiation factor 2; Provisional	99.71
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.71
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.71
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.7
PRK05306	787	infB translation initiation factor IF-2; Validated	99.7
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.7
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.7
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.7
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.7
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.7
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.7
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.7
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.7
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.7
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.7
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.7
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.7
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.69
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.69
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.69
COG0536	369	Obg Predicted GTPase [General function prediction	99.69
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.69
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.69
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.69
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.69
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.68
PRK12317	425	elongation factor 1-alpha; Reviewed	99.68
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.68
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.68
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.68
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.68
PRK12735	396	elongation factor Tu; Reviewed	99.68
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.68
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.68
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.68
PRK12736	394	elongation factor Tu; Reviewed	99.67
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.67
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.67
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.67
PLN03127	447	Elongation factor Tu; Provisional	99.67
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.66
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.66
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.66
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.65
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.65
PRK09866	741	hypothetical protein; Provisional	99.65
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.65
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.64
PRK00049	396	elongation factor Tu; Reviewed	99.64
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.64
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.64
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.64
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.64
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.63
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.63
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.63
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.62
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.62
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.62
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.62
KOG0394	210	consensus Ras-related GTPase [General function pre	99.62
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.61
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.61
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.61
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.61
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.61
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.6
PRK04004	586	translation initiation factor IF-2; Validated	99.6
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.6
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.6
PLN03126	478	Elongation factor Tu; Provisional	99.6
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.6
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.59
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.59
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.59
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.59
PRK05433	600	GTP-binding protein LepA; Provisional	99.59
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.59
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.59
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.59
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.58
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.58
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.58
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.58
PRK00007	693	elongation factor G; Reviewed	99.58
COG2229	187	Predicted GTPase [General function prediction only	99.58
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.58
PRK10218	607	GTP-binding protein; Provisional	99.57
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.57
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.56
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.56
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.55
PLN00023	334	GTP-binding protein; Provisional	99.54
KOG1145	683	consensus Mitochondrial translation initiation fac	99.54
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.53
PTZ00141	446	elongation factor 1- alpha; Provisional	99.53
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.53
PRK12739	691	elongation factor G; Reviewed	99.53
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.51
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.51
COG1163	365	DRG Predicted GTPase [General function prediction	99.51
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.51
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.5
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.5
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.5
COG1100	219	GTPase SAR1 and related small G proteins [General	99.49
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.48
PRK09602	396	translation-associated GTPase; Reviewed	99.48
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.48
PRK13351	687	elongation factor G; Reviewed	99.48
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.47
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.46
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.43
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.43
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.4
PLN00043	447	elongation factor 1-alpha; Provisional	99.39
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.38
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.38
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.38
PTZ00258	390	GTP-binding protein; Provisional	99.37
PTZ00416	836	elongation factor 2; Provisional	99.36
PRK09601	364	GTP-binding protein YchF; Reviewed	99.35
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.35
KOG0395	196	consensus Ras-related GTPase [General function pre	99.34
PRK13768	253	GTPase; Provisional	99.33
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.33
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.33
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.3
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.3
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.28
PRK12740	668	elongation factor G; Reviewed	99.27
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	99.27
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.27
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.26
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.26
KOG2486	320	consensus Predicted GTPase [General function predi	99.25
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	99.21
PRK07560	731	elongation factor EF-2; Reviewed	99.21
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.2
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.2
PRK14845	1049	translation initiation factor IF-2; Provisional	99.19
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.19
KOG0410	410	consensus Predicted GTP binding protein [General f	99.18
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.17
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	99.15
KOG0090	238	consensus Signal recognition particle receptor, be	99.15
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.12
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.11
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.11
PTZ00099	176	rab6; Provisional	99.1
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.09
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.08
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.08
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.08
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.06
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.06
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.06
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.05
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.04
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.03
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.03
PRK09563	287	rbgA GTPase YlqF; Reviewed	99.02
KOG1673	205	consensus Ras GTPases [General function prediction	98.99
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	98.99
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	98.99
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	98.97
KOG3883	198	consensus Ras family small GTPase [Signal transduc	98.96
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	98.96
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.96
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.96
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.95
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.95
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.93
PRK12288	347	GTPase RsgA; Reviewed	98.92
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.91
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.91
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.88
COG1162	301	Predicted GTPases [General function prediction onl	98.88
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.88
PRK12289	352	GTPase RsgA; Reviewed	98.87
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.85
COG1161	322	Predicted GTPases [General function prediction onl	98.84
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.84
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.84
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.84
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.84
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.83
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.82
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.81
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	98.8
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.78
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.77
PRK10416	318	signal recognition particle-docking protein FtsY;	98.76
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.76
PRK00098	298	GTPase RsgA; Reviewed	98.75
KOG0460	449	consensus Mitochondrial translation elongation fac	98.75
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.74
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	98.74
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.73
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.73
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.73
PRK14974	336	cell division protein FtsY; Provisional	98.73
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.73
PRK13796	365	GTPase YqeH; Provisional	98.72
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.7
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.7
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.7
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.69
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.65
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.64
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.61
COG3523	1188	IcmF Type VI protein secretion system component Va	98.6
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.6
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.6
PRK10867	433	signal recognition particle protein; Provisional	98.59
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.59
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.56
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.55
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.55
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.51
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.51
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.51
cd03112	158	CobW_like The function of this protein family is u	98.49
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.48
TIGR00959	428	ffh signal recognition particle protein. This mode	98.45
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.41
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.4
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.39
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	98.36
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.35
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	98.33
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	98.31
KOG0082	354	consensus G-protein alpha subunit (small G protein	98.27
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.26
KOG2484	435	consensus GTPase [General function prediction only	98.21
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.17
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.17
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.17
KOG2423	572	consensus Nucleolar GTPase [General function predi	98.14
KOG1143	591	consensus Predicted translation elongation factor	98.13
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	98.13
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	98.12
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.09
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.09
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.07
cd03114	148	ArgK-like The function of this protein family is u	98.03
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.02
PRK01889	356	GTPase RsgA; Reviewed	98.01
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.99
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	97.99
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	97.96
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.9
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.9
KOG3887	347	consensus Predicted small GTPase involved in nucle	97.9
PRK13695	174	putative NTPase; Provisional	97.86
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.85
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.8
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	97.8
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.77
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.75
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	97.74
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.73
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.71
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.66
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.65
KOG1533	290	consensus Predicted GTPase [General function predi	97.62
COG0523	323	Putative GTPases (G3E family) [General function pr	97.61
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.61
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.6
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.56
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.56
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.56
PF00004	132	AAA: ATPase family associated with various cellula	97.55
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.55
cd03111	106	CpaE_like This protein family consists of proteins	97.53
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.51
cd02036	179	MinD Bacterial cell division requires the formatio	97.5
PRK14738	206	gmk guanylate kinase; Provisional	97.5
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	97.5
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.49
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.48
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.46
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.46
PRK14737	186	gmk guanylate kinase; Provisional	97.44
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.41
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	97.41
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.4
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.38
KOG0466	466	consensus Translation initiation factor 2, gamma s	97.38
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.36
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.35
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.33
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	97.33
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.32
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.31
PRK12289	352	GTPase RsgA; Reviewed	97.31
COG0488	530	Uup ATPase components of ABC transporters with dup	97.29
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.28
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.25
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.22
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.22
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.2
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	97.18
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.18
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.18
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.17
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.16
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.16
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.16
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.16
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.15
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.15
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.15
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.15
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.14
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.13
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.13
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.13
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.12
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.11
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.11
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.1
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.1
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.1
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.1
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.1
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.09
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.09
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.09
KOG4181	491	consensus Uncharacterized conserved protein [Funct	97.07
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.07
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.07
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.07
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.07
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.07
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.06
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.06
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.06
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.06
cd03215	182	ABC_Carb_Monos_II This family represents domain II	97.06
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.06
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.05
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	97.05
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.05
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	97.05
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.04
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.04
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	97.04
PRK07261	171	topology modulation protein; Provisional	97.03
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.03
PRK10908	222	cell division protein FtsE; Provisional	97.03
PRK05480	209	uridine/cytidine kinase; Provisional	97.03
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	97.03
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.03
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	97.03
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.02

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=100.00  E-value=1.4e-38  Score=256.49  Aligned_cols=211  Identities=42%  Similarity=0.724  Sum_probs=173.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      ++|+|+|++|+||||++|+|+|...+.+..+..++|..+...... ..+..+.||||||+.++....+.+...+.+++..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~-~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~   79 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGE-VDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL   79 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEE-ETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeee-ecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence            589999999999999999999999988887778889888888775 7899999999999999888888888899999988


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR  179 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (259)
                      +.+++|++|||++++ +++..+...++.+.+.||.+++++++||+|++|...+  ..+++|+....+..++++++.|++|
T Consensus        80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCE
Confidence            899999999999999 9999999999999999999999999999999999887  6688888743345799999999999


Q ss_pred             EEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhHHHHHHH
Q 024985          180 RVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQ  234 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (259)
                      +++|++...+......++.+||+.|.+++.++++.+|++++|+++++..++.+++
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~~~~~~~~  211 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEERKEEYQAQ  211 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHCCH-----
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhhc
Confidence            9999998444445568999999999999999999999999999999876655443

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=100.00  E-value=2.1e-35  Score=235.67  Aligned_cols=196  Identities=51%  Similarity=0.839  Sum_probs=173.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      ++|+|+|++|+|||||+|+|+|...+.+.....+.|..+...... ..+..+.+|||||+++.......+...+..++..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~-~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~   79 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAV-WDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL   79 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEE-ECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence            479999999999999999999999877776667888888877766 4788999999999998876666777788888888


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR  179 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (259)
                      +.+++|++|||++++. ++..+...++.+.+.||...++++++|+|++|.+..  .++++++.. ....++.+++.|+++
T Consensus        80 ~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~l~~~c~~r  155 (196)
T cd01852          80 SAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKRLLEKCGGR  155 (196)
T ss_pred             cCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHHHHHHhCCe
Confidence            8899999999999984 999999999999999998888999999999999977  789999884 457899999999999


Q ss_pred             EEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 024985          180 RVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIF  221 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~  221 (259)
                      ++.|++... ++....++.+|++.|.+++++|++.+|++++|
T Consensus       156 ~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~~  196 (196)
T cd01852         156 YVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDMY  196 (196)
T ss_pred             EEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence            999999876 45667999999999999999999999998754

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG1159 Era GTPase [General function prediction only]

Probab=99.94  E-value=3e-25  Score=180.72  Aligned_cols=181  Identities=16%  Similarity=0.253  Sum_probs=137.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ...|+++|+||||||||+|+|+|..+  +.+++.+.|+.....++...++.+++|+||||++.+   ...+.+.+.+.+.
T Consensus         6 sGfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~   80 (298)
T COG1159           6 SGFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAAR   80 (298)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHH
Confidence            46899999999999999999999998  556677788888888777677889999999999965   4556778888888


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCccc-HHhhhCCCCCchHHHHHHHcC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDET-LEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      .+..++|+++||+|++..+...|..+++.+++ ..    .|+++++||+|...+  +. +..+         .+......
T Consensus        81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~-~~----~pvil~iNKID~~~~--~~~l~~~---------~~~~~~~~  144 (298)
T COG1159          81 SALKDVDLILFVVDADEGWGPGDEFILEQLKK-TK----TPVILVVNKIDKVKP--KTVLLKL---------IAFLKKLL  144 (298)
T ss_pred             HHhccCcEEEEEEeccccCCccHHHHHHHHhh-cC----CCeEEEEEccccCCc--HHHHHHH---------HHHHHhhC
Confidence            88999999999999997899999999998887 22    399999999999877  22 2211         11122212


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELK  225 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~  225 (259)
                      ...-.|..++..    ..++..|++.+.+.+++ +..+|..+++.+..
T Consensus       145 ~f~~ivpiSA~~----g~n~~~L~~~i~~~Lpe-g~~~yp~d~itD~~  187 (298)
T COG1159         145 PFKEIVPISALK----GDNVDTLLEIIKEYLPE-GPWYYPEDQITDRP  187 (298)
T ss_pred             CcceEEEeeccc----cCCHHHHHHHHHHhCCC-CCCcCChhhccCCh
Confidence            111233333332    37899999999999986 45577777665544

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.91  E-value=1.2e-22  Score=157.20  Aligned_cols=168  Identities=20%  Similarity=0.270  Sum_probs=122.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChH---HHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE---FVSKEI   93 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~---~~~~~~   93 (259)
                      ...+-|+++|+||||||||||+|+|.........++|.|+...++.+.    ..+.+||.||++..+.+..   .+...+
T Consensus        22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k~~~e~w~~~i   97 (200)
T COG0218          22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPKEVKEKWKKLI   97 (200)
T ss_pred             CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----CcEEEEeCCCcccccCCHHHHHHHHHHH
Confidence            356789999999999999999999977444445578999999887543    2388999999998776652   344445


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      ..++.... ...++++++|+.+.+...|.++++++.. .+.    |++||+||+|.+..  ....        +.+..+.
T Consensus        98 ~~YL~~R~-~L~~vvlliD~r~~~~~~D~em~~~l~~-~~i----~~~vv~tK~DKi~~--~~~~--------k~l~~v~  161 (200)
T COG0218          98 EEYLEKRA-NLKGVVLLIDARHPPKDLDREMIEFLLE-LGI----PVIVVLTKADKLKK--SERN--------KQLNKVA  161 (200)
T ss_pred             HHHHhhch-hheEEEEEEECCCCCcHHHHHHHHHHHH-cCC----CeEEEEEccccCCh--hHHH--------HHHHHHH
Confidence            55544322 3688999999998899999999999988 454    99999999999976  2221        1223333


Q ss_pred             HHc----CCc--EEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          174 QLC----ENR--RVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       174 ~~~----~~~--~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +..    ...  +..|++...      .|+++|...|.+.+..
T Consensus       162 ~~l~~~~~~~~~~~~~ss~~k------~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         162 EELKKPPPDDQWVVLFSSLKK------KGIDELKAKILEWLKE  198 (200)
T ss_pred             HHhcCCCCccceEEEEecccc------cCHHHHHHHHHHHhhc
Confidence            222    223  455555543      6799999999887654

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.91  E-value=7.6e-23  Score=170.09  Aligned_cols=193  Identities=23%  Similarity=0.307  Sum_probs=135.9

Q ss_pred             CCCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHH
Q 024985           13 TSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE   92 (259)
Q Consensus        13 ~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~   92 (259)
                      .+.....++|+++|.+|+||||++|+|+|...+..... .+.|......... ..+..+.+|||||+.+....++.....
T Consensus        32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f-~s~t~~~~~~~~~-~~G~~l~VIDTPGL~d~~~~~e~~~~~  109 (313)
T TIGR00991        32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAF-QSEGLRPMMVSRT-RAGFTLNIIDTPGLIEGGYINDQAVNI  109 (313)
T ss_pred             ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeEEEEEEE-ECCeEEEEEECCCCCchHHHHHHHHHH
Confidence            44556778999999999999999999999986443222 2333333333223 578899999999999764333333222


Q ss_pred             HHHHHhhcCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985           93 IVKCIGMAKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE  171 (259)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (259)
                      +..++  ...++|++|||.+.+ .+++..|..+++.+.+.||.+++++++||+||+|..++++.++++|+.+ ....+++
T Consensus       110 ik~~l--~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~  186 (313)
T TIGR00991       110 IKRFL--LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLR  186 (313)
T ss_pred             HHHHh--hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHH
Confidence            22222  234789999997665 3788899999999999999999999999999999887666899999984 6778888


Q ss_pred             HHHHcC-----------CcEEEEeCCCccc---------ccchhHHHHHHHHHHHHHHH
Q 024985          172 ILQLCE-----------NRRVLFDNKTKDA---------ATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       172 ~~~~~~-----------~~~~~~~~~~~~~---------~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +++.+.           .++.+..|+....         .+....+..|++.|-++...
T Consensus       187 ~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~  245 (313)
T TIGR00991       187 VIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISN  245 (313)
T ss_pred             HHHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhC
Confidence            887653           2334555442211         01123578899988887654

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.90  E-value=6.4e-23  Score=155.48  Aligned_cols=154  Identities=19%  Similarity=0.228  Sum_probs=104.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh--HHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS--EFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~--~~~~~~~~~~~   97 (259)
                      .+|+++|.||+|||||+|+|+|.....  ..++++|.......+. ..+..+.++||||+++.....  +.+...+   +
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v--~n~pG~Tv~~~~g~~~-~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~---l   74 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKV--GNWPGTTVEKKEGIFK-LGDQQVELVDLPGIYSLSSKSEEERVARDY---L   74 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEE--EESTTSSSEEEEEEEE-ETTEEEEEEE----SSSSSSSHHHHHHHHH---H
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCcee--cCCCCCCeeeeeEEEE-ecCceEEEEECCCcccCCCCCcHHHHHHHH---H
Confidence            379999999999999999999999532  3468888887776665 577899999999988654332  2222222   2


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      .  ...+|++++|+|++ .+ ..+..++..+.+ +|.    |+++|+||+|.....          ........+.+..+
T Consensus        75 ~--~~~~D~ii~VvDa~-~l-~r~l~l~~ql~e-~g~----P~vvvlN~~D~a~~~----------g~~id~~~Ls~~Lg  135 (156)
T PF02421_consen   75 L--SEKPDLIIVVVDAT-NL-ERNLYLTLQLLE-LGI----PVVVVLNKMDEAERK----------GIEIDAEKLSERLG  135 (156)
T ss_dssp             H--HTSSSEEEEEEEGG-GH-HHHHHHHHHHHH-TTS----SEEEEEETHHHHHHT----------TEEE-HHHHHHHHT
T ss_pred             h--hcCCCEEEEECCCC-CH-HHHHHHHHHHHH-cCC----CEEEEEeCHHHHHHc----------CCEECHHHHHHHhC
Confidence            1  35789999999998 44 333456666666 453    999999999987542          11223556666667


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLV  204 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i  204 (259)
                      .+++.+++...      +|+.+|++.|
T Consensus       136 ~pvi~~sa~~~------~g~~~L~~~I  156 (156)
T PF02421_consen  136 VPVIPVSARTG------EGIDELKDAI  156 (156)
T ss_dssp             S-EEEEBTTTT------BTHHHHHHHH
T ss_pred             CCEEEEEeCCC------cCHHHHHhhC
Confidence            77666766543      7899998875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.90  E-value=1.7e-22  Score=173.21  Aligned_cols=162  Identities=22%  Similarity=0.239  Sum_probs=124.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      +.|+++|+||||||||+|+|+|.....+. ..+|+|++..+....| .+..|.+|||+|+.+..  .+.+...+......
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~-D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~~   79 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVS-DTPGVTRDRIYGDAEW-LGREFILIDTGGLDDGD--EDELQELIREQALI   79 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEee-cCCCCccCCccceeEE-cCceEEEEECCCCCcCC--chHHHHHHHHHHHH
Confidence            78999999999999999999999975553 4688999999888874 66779999999998643  24456666666666


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR  179 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (259)
                      +...||++|||+|+..++++.|..+.++|.+ .+    +|+++|+||+|..... .            ...+.-..--+.
T Consensus        80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~-~~----kpviLvvNK~D~~~~e-~------------~~~efyslG~g~  141 (444)
T COG1160          80 AIEEADVILFVVDGREGITPADEEIAKILRR-SK----KPVILVVNKIDNLKAE-E------------LAYEFYSLGFGE  141 (444)
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh-cC----CCEEEEEEcccCchhh-h------------hHHHHHhcCCCC
Confidence            7778899999999998999999999999984 33    3999999999977330 1            112222221234


Q ss_pred             EEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          180 RVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ++.+++.+.      .|+.+|++.+.+.++
T Consensus       142 ~~~ISA~Hg------~Gi~dLld~v~~~l~  165 (444)
T COG1160         142 PVPISAEHG------RGIGDLLDAVLELLP  165 (444)
T ss_pred             ceEeehhhc------cCHHHHHHHHHhhcC
Confidence            556666543      789999999998874

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.89  E-value=6.8e-22  Score=176.62  Aligned_cols=162  Identities=22%  Similarity=0.324  Sum_probs=121.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ..+|+|+|++|+||||++|+|+|...+.+.....+ |+.+...... ..+..+.||||||+.++..... ....+...+.
T Consensus       118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~-TTr~~ei~~~-idG~~L~VIDTPGL~dt~~dq~-~neeILk~Ik  194 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMG-TTSVQEIEGL-VQGVKIRVIDTPGLKSSASDQS-KNEKILSSVK  194 (763)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhccccccccCCCCC-ceEEEEEEEE-ECCceEEEEECCCCCccccchH-HHHHHHHHHH
Confidence            47899999999999999999999987766543344 4444333233 4678999999999998754322 2334444332


Q ss_pred             h--cCCCccEEEEEEeCCC-CCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCc-----ccHHhhhCCCCCchHH
Q 024985           99 M--AKDGIHAVLLVFSVRN-RFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDND-----ETLEDYLGPECPKPLK  170 (259)
Q Consensus        99 ~--~~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~-----~~~~~~~~~~~~~~l~  170 (259)
                      .  ...++|++|||+.++. ....++..+++.|.+.||..+++++|||+|++|.+++++     .++++|+.+ +...++
T Consensus       195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~Lq  273 (763)
T TIGR00993       195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIVQ  273 (763)
T ss_pred             HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHHH
Confidence            2  2346899999998762 233467789999999999999999999999999997532     689999984 777899


Q ss_pred             HHHHHcCCcEEEEe
Q 024985          171 EILQLCENRRVLFD  184 (259)
Q Consensus       171 ~~~~~~~~~~~~~~  184 (259)
                      .++..|.++...|+
T Consensus       274 ~~Irq~~g~~~l~n  287 (763)
T TIGR00993       274 QAIGQAVGDLRLMN  287 (763)
T ss_pred             HHHHHhcCcceecc
Confidence            99999998666554

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>TIGR00436 era GTP-binding protein Era

Probab=99.88  E-value=6.2e-22  Score=165.44  Aligned_cols=175  Identities=15%  Similarity=0.211  Sum_probs=110.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      +|+++|++|||||||+|+|+|.....  +++.+.|+......+...++..+.+|||||+.....   .+...+.+....+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~--vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~---~l~~~~~~~~~~~   76 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISI--TSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH---SLNRLMMKEARSA   76 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEee--cCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc---hHHHHHHHHHHHH
Confidence            69999999999999999999987632  333333333333344434566899999999876422   2333344444455


Q ss_pred             CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-c
Q 024985          101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN-R  179 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~  179 (259)
                      ...+|++++|+|++...+.. ..+++.+.. .+    .|+++|+||+|+...  ..+.+        .+..+....+. .
T Consensus        77 l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~-~~----~p~ilV~NK~Dl~~~--~~~~~--------~~~~~~~~~~~~~  140 (270)
T TIGR00436        77 IGGVDLILFVVDSDQWNGDG-EFVLTKLQN-LK----RPVVLTRNKLDNKFK--DKLLP--------LIDKYAILEDFKD  140 (270)
T ss_pred             HhhCCEEEEEEECCCCCchH-HHHHHHHHh-cC----CCEEEEEECeeCCCH--HHHHH--------HHHHHHhhcCCCc
Confidence            67889999999998554443 445555544 23    499999999998743  22221        12222222222 3


Q ss_pred             EEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 024985          180 RVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAE  223 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~  223 (259)
                      ++.+++.  .+    .|+.+|++.+.+.+++ +...|..++..+
T Consensus       141 v~~iSA~--~g----~gi~~L~~~l~~~l~~-~~~~~~~~~~t~  177 (270)
T TIGR00436       141 IVPISAL--TG----DNTSFLAAFIEVHLPE-GPFRYPEDYVTD  177 (270)
T ss_pred             eEEEecC--CC----CCHHHHHHHHHHhCCC-CCCCCCCcccCC
Confidence            3334433  32    7999999999998865 344565554443

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.88  E-value=1.3e-21  Score=160.45  Aligned_cols=136  Identities=28%  Similarity=0.348  Sum_probs=102.6

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh---HHHHH
Q 024985           15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS---EFVSK   91 (259)
Q Consensus        15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~---~~~~~   91 (259)
                      .....++|+|+|++|||||||+|+|+|...+.... ..+.|..+..+... .++..+.+|||||+.++....   ..+..
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~-~~~~T~~~~~~~~~-~~g~~i~vIDTPGl~~~~~~~~~~~~~~~  104 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSA-FQSETLRVREVSGT-VDGFKLNIIDTPGLLESVMDQRVNRKILS  104 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEE-ECCeEEEEEECCCcCcchhhHHHHHHHHH
Confidence            34567999999999999999999999998755432 34556666655444 567899999999999764321   22333


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCc
Q 024985           92 EIVKCIGMAKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDND  154 (259)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~  154 (259)
                      .+..++.  ..++|+++||..++ .++...+..+++.|.+.||.+++.++++|+||+|...+++
T Consensus       105 ~I~~~l~--~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~  166 (249)
T cd01853         105 SIKRYLK--KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG  166 (249)
T ss_pred             HHHHHHh--ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence            3333332  23679999998776 4778888999999999999999999999999999986643

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.88  E-value=2.1e-21  Score=166.67  Aligned_cols=193  Identities=20%  Similarity=0.268  Sum_probs=140.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHH-HHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSK-EIVKC   96 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~-~~~~~   96 (259)
                      ...+|+++|+||+|||||+|+|+|++..... ...|+|++.....+. .+++.+.+|||.|+.....-.+.+.. .+.+.
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e-~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFE-RDGRKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEE-ECCeEEEEEECCCCCcccccccceEEEeehhh
Confidence            4689999999999999999999999964443 245677777766666 78999999999998743322221100 01111


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                       ..+...++++++|+|++.+++.+|..++..+.+ .|.    +++||+||||+++.+...++++..     .++..+...
T Consensus       255 -~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~-~g~----~~vIvvNKWDl~~~~~~~~~~~k~-----~i~~~l~~l  323 (444)
T COG1160         255 -LKAIERADVVLLVIDATEGISEQDLRIAGLIEE-AGR----GIVIVVNKWDLVEEDEATMEEFKK-----KLRRKLPFL  323 (444)
T ss_pred             -HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHH-cCC----CeEEEEEccccCCchhhHHHHHHH-----HHHHHhccc
Confidence             123456699999999999999999999999888 454    999999999998764344454433     455566666


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGA  228 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~~~  228 (259)
                      +....+|-+..     ...++.+|++.+.+.....+.+.-+..+...++.+.
T Consensus       324 ~~a~i~~iSA~-----~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~  370 (444)
T COG1160         324 DFAPIVFISAL-----TGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAV  370 (444)
T ss_pred             cCCeEEEEEec-----CCCChHHHHHHHHHHHHHhccccCHHHHHHHHHHHH
Confidence            66544443332     237899999999999998888888888888877653

>PRK15494 era GTPase Era; Provisional

Probab=99.87  E-value=5.7e-21  Score=164.09  Aligned_cols=179  Identities=20%  Similarity=0.275  Sum_probs=116.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC-CCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS-SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ...+|+++|++|||||||+|+|++.....  .++ ..+|.......+. .++.++.||||||+.....   .+...+.+.
T Consensus        51 k~~kV~ivG~~nvGKSTLin~l~~~k~~i--vs~k~~tTr~~~~~~~~-~~~~qi~~~DTpG~~~~~~---~l~~~~~r~  124 (339)
T PRK15494         51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSI--VTPKVQTTRSIITGIIT-LKDTQVILYDTPGIFEPKG---SLEKAMVRC  124 (339)
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHhCCceee--ccCCCCCccCcEEEEEE-eCCeEEEEEECCCcCCCcc---cHHHHHHHH
Confidence            34599999999999999999999987632  222 3344443333333 5677899999999865322   233344444


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...++.++|++|||+|....+...+..+++.+... +    .|.++|+||+|+...   .+.         .+.+.+...
T Consensus       125 ~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~----~p~IlViNKiDl~~~---~~~---------~~~~~l~~~  187 (339)
T PRK15494        125 AWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-N----IVPIFLLNKIDIESK---YLN---------DIKAFLTEN  187 (339)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEEhhcCccc---cHH---------HHHHHHHhc
Confidence            44456788999999998877777776677766552 2    377899999997532   111         122222222


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAEL  224 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~  224 (259)
                      .....+|..++..+    .|+.+|++.+.+.+++ +..+|..+++.+.
T Consensus       188 ~~~~~i~~iSAktg----~gv~eL~~~L~~~l~~-~~~~~~~~~~td~  230 (339)
T PRK15494        188 HPDSLLFPISALSG----KNIDGLLEYITSKAKI-SPWLYAEDDITDL  230 (339)
T ss_pred             CCCcEEEEEeccCc----cCHHHHHHHHHHhCCC-CCCCCCCCCCCCC
Confidence            21123444444333    7999999999998875 5566766665443

>PRK00089 era GTPase Era; Reviewed

Probab=99.87  E-value=6.3e-21  Score=161.32  Aligned_cols=178  Identities=17%  Similarity=0.280  Sum_probs=115.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ...|+++|++|||||||+|+|+|.....  .++.+.|+......+...++..+.+|||||+....   ..+.+.+.....
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~--vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~   79 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISI--VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAW   79 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceee--cCCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHH
Confidence            4689999999999999999999988633  23333444444443333355789999999998643   223344444555


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN  178 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (259)
                      .+...+|++++|+|++..++..+..+++.+.. .    ..|+++|+||+|+.... ..+..        .+..+.+..+.
T Consensus        80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~-~----~~pvilVlNKiDl~~~~-~~l~~--------~~~~l~~~~~~  145 (292)
T PRK00089         80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKK-V----KTPVILVLNKIDLVKDK-EELLP--------LLEELSELMDF  145 (292)
T ss_pred             HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhh-c----CCCEEEEEECCcCCCCH-HHHHH--------HHHHHHhhCCC
Confidence            56678899999999986677777777776653 2    24999999999987331 22222        22233332222


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIF  221 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~  221 (259)
                       ..+|..++..+    .++.+|++.+.+.++++ ...|..++.
T Consensus       146 -~~i~~iSA~~~----~gv~~L~~~L~~~l~~~-~~~y~~~~~  182 (292)
T PRK00089        146 -AEIVPISALKG----DNVDELLDVIAKYLPEG-PPYYPEDQI  182 (292)
T ss_pred             -CeEEEecCCCC----CCHHHHHHHHHHhCCCC-CCCCCCCCC
Confidence             12333333332    78999999999988763 345655443

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.85  E-value=7e-20  Score=159.41  Aligned_cols=178  Identities=19%  Similarity=0.176  Sum_probs=112.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      -|+|+|.||||||||+|+|++...  .....+.+|..+....+...++..++|+||||+.........+...+.+++   
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i---  235 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHL---  235 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHH---
Confidence            799999999999999999998774  223345566666666555334467999999999865443333444555443   


Q ss_pred             CCCccEEEEEEeCC---CC-CCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985          101 KDGIHAVLLVFSVR---NR-FSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus       101 ~~~~~~il~v~d~~---~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                       ..+|++++|+|++   .. .......+++.+......-..+|+++|+||+|+...  ..+.+        .++.+.+..
T Consensus       236 -~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~--------~l~~l~~~~  304 (390)
T PRK12298        236 -ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEE--------RAKAIVEAL  304 (390)
T ss_pred             -HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHH--------HHHHHHHHh
Confidence             4559999999986   11 112224455555542111123599999999998754  22222        233333333


Q ss_pred             CC--cEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 024985          177 EN--RRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIF  221 (259)
Q Consensus       177 ~~--~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~  221 (259)
                      +.  .++.+++..      ..++.+|++.|.+.+++. ...|..++.
T Consensus       305 ~~~~~Vi~ISA~t------g~GIdeLl~~I~~~L~~~-~~~~~~~~~  344 (390)
T PRK12298        305 GWEGPVYLISAAS------GLGVKELCWDLMTFIEEN-PREEAEEAE  344 (390)
T ss_pred             CCCCCEEEEECCC------CcCHHHHHHHHHHHhhhC-cccCCcccc
Confidence            32  344455443      278999999999998764 444554443

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.84  E-value=4.1e-19  Score=151.74  Aligned_cols=170  Identities=17%  Similarity=0.157  Sum_probs=108.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      ..|+|+|.+|||||||+|+|++...  .....+.+|..+....+.+.++..+.++||||+.+.......+...+.+++. 
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~--~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie-  235 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIE-  235 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCC--ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhh-
Confidence            4689999999999999999998764  2233455666666665554456789999999998654443445555555544 


Q ss_pred             cCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN  178 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (259)
                         .++++|+|+|+++.-+..+ ..+.+.|......-..+|+++|+||+|+...  .....       ..++......+.
T Consensus       236 ---~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~--~~~~~-------~~~~~~~~~~~~  303 (335)
T PRK12299        236 ---RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE--EEERE-------KRAALELAALGG  303 (335)
T ss_pred             ---hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc--hhHHH-------HHHHHHHHhcCC
Confidence               4599999999984333333 2344445442111124699999999998754  21111       012222233333


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .++..++.  ..    .++.+|++.|.+.+.+
T Consensus       304 ~i~~iSAk--tg----~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        304 PVFLISAV--TG----EGLDELLRALWELLEE  329 (335)
T ss_pred             CEEEEEcC--CC----CCHHHHHHHHHHHHHh
Confidence            44444443  22    7899999999888765

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.83  E-value=1.3e-19  Score=132.38  Aligned_cols=116  Identities=22%  Similarity=0.321  Sum_probs=81.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      +|+|+|++|+|||||+|+|++........ ..++|....+..+. .++..+.++||||+.+....... .+.+...+...
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~-~~~~T~~~~~~~~~-~~~~~~~~vDtpG~~~~~~~~~~-~~~~~~~~~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSN-IPGTTRDPVYGQFE-YNNKKFILVDTPGINDGESQDND-GKEIRKFLEQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESS-STTSSSSEEEEEEE-ETTEEEEEEESSSCSSSSHHHHH-HHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccc-cccceeeeeeeeee-eceeeEEEEeCCCCcccchhhHH-HHHHHHHHHHH
Confidence            58999999999999999999976433333 35666666544444 57788899999999875432221 12233333333


Q ss_pred             CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeC
Q 024985          101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTG  146 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk  146 (259)
                       ..+|+++||+|++.+....+..+++.+.  .    ..|+++|+||
T Consensus        78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~----~~~~i~v~NK  116 (116)
T PF01926_consen   78 -SKSDLIIYVVDASNPITEDDKNILRELK--N----KKPIILVLNK  116 (116)
T ss_dssp             -CTESEEEEEEETTSHSHHHHHHHHHHHH--T----TSEEEEEEES
T ss_pred             -HHCCEEEEEEECCCCCCHHHHHHHHHHh--c----CCCEEEEEcC
Confidence             6779999999987544555667777773  2    2499999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.83  E-value=3.8e-19  Score=138.04  Aligned_cols=163  Identities=23%  Similarity=0.224  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChH-HHHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE-FVSKEIVKCIG   98 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~-~~~~~~~~~~~   98 (259)
                      ++|+++|.+|||||||+|+|++.....  ...++.|..+...... ..+..+.+|||||+.+...... .+.......  
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~--~~~~~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~--   75 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEV--APYPFTTKSLFVGHFD-YKYLRWQVIDTPGLLDRPLEERNTIEMQAITA--   75 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCcc--CCCCCcccceeEEEEc-cCceEEEEEECCCcCCccccCCchHHHHHHHH--
Confidence            579999999999999999999887521  1123345555544433 3567999999999864322111 111111111  


Q ss_pred             hcCCCccEEEEEEeCCCCCC---HhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           99 MAKDGIHAVLLVFSVRNRFS---EEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~---~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                       ....+|++|+|+|+++..+   .....++..+...+.   ..|+++|+||+|+...  ....+         .+.....
T Consensus        76 -~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~--~~~~~---------~~~~~~~  140 (168)
T cd01897          76 -LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF--EDLSE---------IEEEEEL  140 (168)
T ss_pred             -HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch--hhHHH---------HHHhhhh
Confidence             1123589999999984432   222445566654331   3599999999998754  22221         1122222


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ....  +|..++..+    .|+.+|++.+.+.+
T Consensus       141 ~~~~--~~~~Sa~~~----~gi~~l~~~l~~~~  167 (168)
T cd01897         141 EGEE--VLKISTLTE----EGVDEVKNKACELL  167 (168)
T ss_pred             ccCc--eEEEEeccc----CCHHHHHHHHHHHh
Confidence            1222  344443333    78999999887654

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=1.1e-18  Score=155.46  Aligned_cols=189  Identities=20%  Similarity=0.237  Sum_probs=120.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ...+|+++|++|+|||||+|+|++....... ...++|.......+. .++..+.+|||||+.........+........
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~-~~~gtt~~~~~~~~~-~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVS-DIAGTTRDSIDTPFE-RDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCceEEEEEEEEE-ECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            4689999999999999999999998753332 234556555444443 56788999999998654332221111111111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      ..+...+|++|+|+|++.+.+..+..++..+.+ .+    .|+++|+||+|+...  ....++..     .+...+....
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~-~~----~~~ivv~NK~Dl~~~--~~~~~~~~-----~~~~~l~~~~  317 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLRIAGLALE-AG----RALVIVVNKWDLVDE--KTMEEFKK-----ELRRRLPFLD  317 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CcEEEEEECccCCCH--HHHHHHHH-----HHHHhccccc
Confidence            223456799999999998899988887777655 33    399999999998743  32332221     2222222222


Q ss_pred             C-cEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 024985          178 N-RRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKK  226 (259)
Q Consensus       178 ~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~  226 (259)
                      . +++..++.  .    ..++.++++.+.+.......+.-+..+...+++
T Consensus       318 ~~~i~~~SA~--~----~~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~  361 (435)
T PRK00093        318 YAPIVFISAL--T----GQGVDKLLEAIDEAYENANRRISTSVLNRVLEE  361 (435)
T ss_pred             CCCEEEEeCC--C----CCCHHHHHHHHHHHHHHHcCcCChHHHHHHHHH
Confidence            2 23333332  2    278999999999888766555445555555443

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.83  E-value=8.4e-19  Score=153.51  Aligned_cols=167  Identities=16%  Similarity=0.141  Sum_probs=107.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      .|+|+|.||||||||+|+|++...  .....+.+|..+....+.+.++..++++||||+.........+...+.+.+.  
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~--kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhie--  235 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKP--KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIE--  235 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCC--ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHh--
Confidence            899999999999999999998774  2223456676676665553347799999999998644333344555555444  


Q ss_pred             CCCccEEEEEEeCCCC---CCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985          101 KDGIHAVLLVFSVRNR---FSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~---~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                        .++++|+|+|+++.   -...+ ..+.+.|......-..+|++||+||+|+...             ...+..+.+..
T Consensus       236 --r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-------------~e~l~~l~~~l  300 (424)
T PRK12297        236 --RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-------------EENLEEFKEKL  300 (424)
T ss_pred             --hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-------------HHHHHHHHHHh
Confidence              44999999999732   12222 3444555543211134699999999996322             11233344444


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG  212 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~  212 (259)
                      +..++.+++.  ..    .++.+|++.|.+.+....
T Consensus       301 ~~~i~~iSA~--tg----eGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        301 GPKVFPISAL--TG----QGLDELLYAVAELLEETP  330 (424)
T ss_pred             CCcEEEEeCC--CC----CCHHHHHHHHHHHHHhCc
Confidence            4334444443  22    789999999999887653

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.82  E-value=1.2e-18  Score=150.16  Aligned_cols=163  Identities=22%  Similarity=0.277  Sum_probs=113.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+|+++|+||||||||+|+|++.+...+. .-+|+|++.....+. .+|.++.++||+|+.++...-+++.   ...
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVT-dI~GTTRDviee~i~-i~G~pv~l~DTAGiRet~d~VE~iG---IeR  289 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVT-DIAGTTRDVIEEDIN-LNGIPVRLVDTAGIRETDDVVERIG---IER  289 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCceEec-CCCCCccceEEEEEE-ECCEEEEEEecCCcccCccHHHHHH---HHH
Confidence            45789999999999999999999999975543 346777777776665 7999999999999997543222211   122


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      .......+|.+|||+|++..++..+...++.+      ...+|+++|.||.|+....  ...         ..    +..
T Consensus       290 s~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~------~~~~~~i~v~NK~DL~~~~--~~~---------~~----~~~  348 (454)
T COG0486         290 AKKAIEEADLVLFVLDASQPLDKEDLALIELL------PKKKPIIVVLNKADLVSKI--ELE---------SE----KLA  348 (454)
T ss_pred             HHHHHHhCCEEEEEEeCCCCCchhhHHHHHhc------ccCCCEEEEEechhccccc--ccc---------hh----hcc
Confidence            23345577999999999977788887777722      1234999999999998762  111         11    111


Q ss_pred             C-CcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          177 E-NRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       177 ~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      . .....++...      .+|+..|.+.|.+++...
T Consensus       349 ~~~~~i~iSa~t------~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         349 NGDAIISISAKT------GEGLDALREAIKQLFGKG  378 (454)
T ss_pred             CCCceEEEEecC------ccCHHHHHHHHHHHHhhc
Confidence            1 1234444432      278999999999988765

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.82  E-value=1.9e-18  Score=153.84  Aligned_cols=190  Identities=19%  Similarity=0.224  Sum_probs=119.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ...+|+++|.+|+|||||+|+|++....... ...++|.+.....+. .++..+.+|||||+.........+........
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-~~~gtt~~~~~~~~~-~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVS-DIAGTTRDSIDIPFE-RNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecC-CCCCceECcEeEEEE-ECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence            4579999999999999999999998743322 234555555444444 46778999999998754332211111111111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      ..+...+|++|+|+|++.+.+..+..++..+.+ .+    .|+++|+||+|+... ....+++..     .++..+...+
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~-~~----~~iiiv~NK~Dl~~~-~~~~~~~~~-----~~~~~~~~~~  317 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLRIAGLILE-AG----KALVIVVNKWDLVKD-EKTREEFKK-----ELRRKLPFLD  317 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-cC----CcEEEEEECcccCCC-HHHHHHHHH-----HHHHhcccCC
Confidence            224567799999999998899988877776655 23    399999999999832 123333221     2222222222


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELK  225 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~  225 (259)
                      ... ++..++..+    .++.++++.+.........+.-+..+...++
T Consensus       318 ~~~-vi~~SA~~g----~~v~~l~~~i~~~~~~~~~~i~t~~ln~~l~  360 (429)
T TIGR03594       318 FAP-IVFISALTG----QGVDKLLDAIDEVYENANRRISTSKLNRVLE  360 (429)
T ss_pred             CCc-eEEEeCCCC----CCHHHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence            222 233333332    7899999999998877665555555554444

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01898 Obg Obg subfamily

Probab=99.82  E-value=3.3e-19  Score=138.66  Aligned_cols=164  Identities=19%  Similarity=0.177  Sum_probs=95.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc-EEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ-VVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~-~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      +|+++|++|||||||+|+|.+.... +. ..++.|.......+. ..+. .+.+|||||+.+.......+...+...   
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~-v~-~~~~~t~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~---   75 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPK-IA-DYPFTTLVPNLGVVR-VDDGRSFVVADIPGLIEGASEGKGLGHRFLRH---   75 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCcc-cc-CCCccccCCcceEEE-cCCCCeEEEEecCcccCcccccCCchHHHHHH---
Confidence            5899999999999999999987641 11 123344444444333 3444 899999999864322111122222222   


Q ss_pred             cCCCccEEEEEEeCCCC-CCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc-
Q 024985          100 AKDGIHAVLLVFSVRNR-FSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC-  176 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  176 (259)
                       ...+|++++|+|++++ -+... ..+.+.+..........|+++|+||+|+.+.  ....+        .+....... 
T Consensus        76 -~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~--------~~~~~~~~~~  144 (170)
T cd01898          76 -IERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFE--------LLKELLKELW  144 (170)
T ss_pred             -HHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHH--------HHHHHHhhCC
Confidence             2356999999999844 22222 3444455443211124599999999998754  22222        122333332 


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      ...++..++.  ..    .++.++++.+.+.
T Consensus       145 ~~~~~~~Sa~--~~----~gi~~l~~~i~~~  169 (170)
T cd01898         145 GKPVFPISAL--TG----EGLDELLRKLAEL  169 (170)
T ss_pred             CCCEEEEecC--CC----CCHHHHHHHHHhh
Confidence            2233333333  22    7899999887654

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.82  E-value=2.9e-18  Score=136.58  Aligned_cols=171  Identities=18%  Similarity=0.319  Sum_probs=105.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh---HHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS---EFVSKEI   93 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~---~~~~~~~   93 (259)
                      ...++|+++|.+|+|||||+|+|++...........++|..+....    .+..+.||||||+.......   +.+...+
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~   97 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKEEKEKWQKLI   97 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence            3568899999999999999999998752222223345565554432    14689999999987543322   1121112


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      ...+ .....++++++|+|++.+.+..+..+++++.. .+    .|+++|+||+|+...  ...+....     .+...+
T Consensus        98 ~~~~-~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~~----~~~iiv~nK~Dl~~~--~~~~~~~~-----~i~~~l  164 (196)
T PRK00454         98 EEYL-RTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-YG----IPVLIVLTKADKLKK--GERKKQLK-----KVRKAL  164 (196)
T ss_pred             HHHH-HhCccceEEEEEEecCCCCCHHHHHHHHHHHH-cC----CcEEEEEECcccCCH--HHHHHHHH-----HHHHHH
Confidence            2222 22345678899999886777766666666643 33    389999999998754  22222111     233333


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ......++..+.  .++    .++.++++.|.+++++
T Consensus       165 ~~~~~~~~~~Sa--~~~----~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        165 KFGDDEVILFSS--LKK----QGIDELRAAIAKWLAE  195 (196)
T ss_pred             HhcCCceEEEEc--CCC----CCHHHHHHHHHHHhcC
Confidence            322233433333  333    7899999999888764

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.82  E-value=1.8e-18  Score=155.14  Aligned_cols=190  Identities=15%  Similarity=0.136  Sum_probs=119.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH-
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC-   96 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~-   96 (259)
                      ...+|+++|++|||||||+|+|++....... ..+++|.+.....+. .++..+.+|||||+........ ....+... 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s-~~~gtT~d~~~~~~~-~~~~~~~l~DTaG~~~~~~~~~-~~e~~~~~~  286 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVD-DVAGTTVDPVDSLIE-LGGKTWRFVDTAGLRRRVKQAS-GHEYYASLR  286 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCccCCcceEEEE-ECCEEEEEEECCCccccccccc-hHHHHHHHH
Confidence            4689999999999999999999998753222 234556555444444 5778899999999853221110 01111111 


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+...+|++++|+|++++.+..+..++..+.. .+    .|+++|+||+|+...  .....+..     .+...+...
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~-~~----~piIiV~NK~Dl~~~--~~~~~~~~-----~i~~~l~~~  354 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE-AG----RALVLAFNKWDLVDE--DRRYYLER-----EIDRELAQV  354 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECcccCCh--hHHHHHHH-----HHHHhcccC
Confidence            1224567899999999998888888777776654 23    499999999998753  21111100     111111111


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKG  227 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~~  227 (259)
                      .... ++..++..    ..++.+|+..+.+.+.....+.-+..+...+++.
T Consensus       355 ~~~~-~~~~SAk~----g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~  400 (472)
T PRK03003        355 PWAP-RVNISAKT----GRAVDKLVPALETALESWDTRIPTGRLNAWLGEL  400 (472)
T ss_pred             CCCC-EEEEECCC----CCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence            2111 22333333    3789999999999988777666666666666554

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.82  E-value=3.8e-19  Score=146.46  Aligned_cols=132  Identities=19%  Similarity=0.233  Sum_probs=96.2

Q ss_pred             CCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh-HHH
Q 024985           11 MPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS-EFV   89 (259)
Q Consensus        11 ~~~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~-~~~   89 (259)
                      .+++.....++|+++|.||||||||+++|++..+  .-.+++.+|+......+. .++..+.+|||||+.|...+. +.+
T Consensus       160 ~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe-~~~~R~QvIDTPGlLDRPl~ErN~I  236 (346)
T COG1084         160 KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFE-RGYLRIQVIDTPGLLDRPLEERNEI  236 (346)
T ss_pred             cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeee-cCCceEEEecCCcccCCChHHhcHH
Confidence            3667777889999999999999999999999886  334455566666666555 677799999999999754322 122


Q ss_pred             HHHHHHHHhhcCCCccEEEEEEeCC--CCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           90 SKEIVKCIGMAKDGIHAVLLVFSVR--NRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        90 ~~~~~~~~~~~~~~~~~il~v~d~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ..+..-.+..   -.++|+|++|++  ++++-++ ..+++.++..|..    |+++|+||+|....
T Consensus       237 E~qAi~AL~h---l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~----p~v~V~nK~D~~~~  295 (346)
T COG1084         237 ERQAILALRH---LAGVILFLFDPSETCGYSLEEQISLLEEIKELFKA----PIVVVINKIDIADE  295 (346)
T ss_pred             HHHHHHHHHH---hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCC----CeEEEEecccccch
Confidence            2222222222   237899999997  5566554 6778888887774    99999999998855

>cd01894 EngA1 EngA1 subfamily

Probab=99.82  E-value=7.6e-19  Score=134.51  Aligned_cols=155  Identities=21%  Similarity=0.249  Sum_probs=100.9

Q ss_pred             EEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCC
Q 024985           23 VLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKD  102 (259)
Q Consensus        23 ~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~  102 (259)
                      +++|.+|+|||||+|+|++....... ..+++|......... ..+..+.+|||||+.+...   .+...+.........
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~-~~~~~t~~~~~~~~~-~~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~   75 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVE-DTPGVTRDRIYGEAE-WGGREFILIDTGGIEPDDE---GISKEIREQAELAIE   75 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeec-CCCCceeCceeEEEE-ECCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence            47999999999999999987642222 234555555555444 5678899999999876432   222333333333455


Q ss_pred             CccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-cEE
Q 024985          103 GIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN-RRV  181 (259)
Q Consensus       103 ~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~  181 (259)
                      .+|++++|+|+.++.+..+..++.++.. .+    .|+++|+||+|+...  ...            ...+...+. .++
T Consensus        76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~-~~----~piiiv~nK~D~~~~--~~~------------~~~~~~~~~~~~~  136 (157)
T cd01894          76 EADVILFVVDGREGLTPADEEIAKYLRK-SK----KPVILVVNKVDNIKE--EDE------------AAEFYSLGFGEPI  136 (157)
T ss_pred             hCCEEEEEEeccccCCccHHHHHHHHHh-cC----CCEEEEEECcccCCh--HHH------------HHHHHhcCCCCeE
Confidence            6799999999986777766666666655 23    499999999998754  111            112222332 344


Q ss_pred             EEeCCCcccccchhHHHHHHHHHHHH
Q 024985          182 LFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       182 ~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      .++...      ..++.+|++.+.+.
T Consensus       137 ~~Sa~~------~~gv~~l~~~l~~~  156 (157)
T cd01894         137 PISAEH------GRGIGDLLDAILEL  156 (157)
T ss_pred             EEeccc------CCCHHHHHHHHHhh
Confidence            444432      26899999887653

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04171 SelB SelB subfamily

Probab=99.82  E-value=1.6e-18  Score=133.72  Aligned_cols=160  Identities=20%  Similarity=0.275  Sum_probs=93.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCccc-ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFK-SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~-~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      .|+++|++|||||||+|+|++..... ......+.|............+..+.+|||||..           .+...+..
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~-----------~~~~~~~~   70 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE-----------KFIKNMLA   70 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH-----------HHHHHHHh
Confidence            68999999999999999999754211 1111233454444444442226789999999952           22223334


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC-C
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE-N  178 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~  178 (259)
                      .+.++|++++|+|+++.........+..+.. .+   .+|+++|+||+|+...  ........     .+.+.++..+ .
T Consensus        71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~---~~~~ilv~NK~Dl~~~--~~~~~~~~-----~~~~~~~~~~~~  139 (164)
T cd04171          71 GAGGIDLVLLVVAADEGIMPQTREHLEILEL-LG---IKRGLVVLTKADLVDE--DWLELVEE-----EIRELLAGTFLA  139 (164)
T ss_pred             hhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hC---CCcEEEEEECccccCH--HHHHHHHH-----HHHHHHHhcCcC
Confidence            4567899999999985554555455544433 22   1389999999998754  21111111     2223333311 1


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      ...++..++..+    .++.+|+..+..
T Consensus       140 ~~~~~~~Sa~~~----~~v~~l~~~l~~  163 (164)
T cd04171         140 DAPIFPVSAVTG----EGIEELKEYLDE  163 (164)
T ss_pred             CCcEEEEeCCCC----cCHHHHHHHHhh
Confidence            122333333332    789999887754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.82  E-value=1.5e-18  Score=155.72  Aligned_cols=164  Identities=21%  Similarity=0.211  Sum_probs=110.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ...++|+++|++|||||||+|+|++....... ..+++|.+....... ..+..+.+|||||+....   ..+...+...
T Consensus        36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~-~~~~~~~l~DT~G~~~~~---~~~~~~~~~~  110 (472)
T PRK03003         36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAE-WNGRRFTVVDTGGWEPDA---KGLQASVAEQ  110 (472)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEE-ECCcEEEEEeCCCcCCcc---hhHHHHHHHH
Confidence            34579999999999999999999987643332 345677766666555 567889999999976321   2233344444


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...++..+|++|||+|++++.+..+..++.++.. .+    .|+++|+||+|+.... ...            .... ..
T Consensus       111 ~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~-~~----~piilV~NK~Dl~~~~-~~~------------~~~~-~~  171 (472)
T PRK03003        111 AEVAMRTADAVLFVVDATVGATATDEAVARVLRR-SG----KPVILAANKVDDERGE-ADA------------AALW-SL  171 (472)
T ss_pred             HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECccCCccc-hhh------------HHHH-hc
Confidence            4555667899999999998888877777777764 22    4999999999976321 111            1111 11


Q ss_pred             CC-cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          177 EN-RRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       177 ~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +. .++..  ++..+    .|+.+|++.|.+.+.+
T Consensus       172 g~~~~~~i--SA~~g----~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        172 GLGEPHPV--SALHG----RGVGDLLDAVLAALPE  200 (472)
T ss_pred             CCCCeEEE--EcCCC----CCcHHHHHHHHhhccc
Confidence            21 22333  33332    7899999988877644

>cd04163 Era Era subfamily

Probab=99.82  E-value=7.3e-19  Score=135.55  Aligned_cols=164  Identities=20%  Similarity=0.245  Sum_probs=100.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ..+|+++|++|+|||||+|++++........ ...++..... ......+..+.+|||||+........   ..+.....
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~---~~~~~~~~   77 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSP-KPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLG---ERMVKAAW   77 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccC-CCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHH---HHHHHHHH
Confidence            4789999999999999999999987533222 1222332222 22223456899999999876432211   12333333


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC-
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE-  177 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-  177 (259)
                      .....+|++++|+|++...+..+..++..+... +    .|+++|+||+|+.... ..+.++        +..+....+ 
T Consensus        78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-~----~~~iiv~nK~Dl~~~~-~~~~~~--------~~~~~~~~~~  143 (168)
T cd04163          78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-K----TPVILVLNKIDLVKDK-EDLLPL--------LEKLKELGPF  143 (168)
T ss_pred             HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-C----CCEEEEEEchhccccH-HHHHHH--------HHHHHhccCC
Confidence            445677999999999866566666666666542 2    3999999999987431 222222        222222222 


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      ..++..+..  .    ..++.+|++.|.+.
T Consensus       144 ~~~~~~s~~--~----~~~~~~l~~~l~~~  167 (168)
T cd04163         144 AEIFPISAL--K----GENVDELLEEIVKY  167 (168)
T ss_pred             CceEEEEec--c----CCChHHHHHHHHhh
Confidence            223333332  2    26899998888654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.82  E-value=5.2e-19  Score=137.18  Aligned_cols=160  Identities=15%  Similarity=0.150  Sum_probs=98.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ++|+++|.+|+|||||+|+|++.....  ....+.|.......+...  .+..+.+|||||...           +....
T Consensus         1 ~~i~iiG~~~~GKtsli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~   67 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMR   67 (168)
T ss_pred             CEEEEEecCCCCHHHHHHHHHhccccc--ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHH
Confidence            469999999999999999999876522  223345555444444422  367899999999532           11122


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH----
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL----  173 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~----  173 (259)
                      ......+|++++|+|+++.........+..+.. .+    .|+++|+||+|+.........+.+        ....    
T Consensus        68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~~----~p~ivv~NK~Dl~~~~~~~~~~~~--------~~~~~~~~  134 (168)
T cd01887          68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKA-AN----VPFIVALNKIDKPNANPERVKNEL--------SELGLQGE  134 (168)
T ss_pred             HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-cC----CCEEEEEEceecccccHHHHHHHH--------HHhhcccc
Confidence            223457799999999986665565666665544 33    499999999998643111111111        1111    


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      +..+..+.++..++..+    .++.+|++.+.++..
T Consensus       135 ~~~~~~~~~~~~Sa~~~----~gi~~l~~~l~~~~~  166 (168)
T cd01887         135 DEWGGDVQIVPTSAKTG----EGIDDLLEAILLLAE  166 (168)
T ss_pred             ccccCcCcEEEeecccC----CCHHHHHHHHHHhhh
Confidence            01122233444444433    789999999877643

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.81  E-value=1.3e-18  Score=148.64  Aligned_cols=167  Identities=19%  Similarity=0.198  Sum_probs=103.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      ..|+|+|.+|||||||+|+|++....  ....+.+|..+....+...++..+.++||||+.........+...+.+.+. 
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~--va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhie-  234 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIE-  234 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHH-
Confidence            57899999999999999999987641  223345566666655553333799999999997654333344555555544 


Q ss_pred             cCCCccEEEEEEeCCCC---CCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985          100 AKDGIHAVLLVFSVRNR---FSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~---~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                         .++++|+|+|+++.   -+..+ ..+.+.+......-..+|++||+||+|+...  ...++        ..+.+.+.
T Consensus       235 ---rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~--------~~~~l~~~  301 (329)
T TIGR02729       235 ---RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAE--------LLKELKKA  301 (329)
T ss_pred             ---hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHH--------HHHHHHHH
Confidence               44999999999843   12122 2334444432111134699999999998754  22222        22233334


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      .+..++..++..      ..++.+|++.|.+.+
T Consensus       302 ~~~~vi~iSAkt------g~GI~eL~~~I~~~l  328 (329)
T TIGR02729       302 LGKPVFPISALT------GEGLDELLYALAELL  328 (329)
T ss_pred             cCCcEEEEEccC------CcCHHHHHHHHHHHh
Confidence            444444444432      278999999987765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.81  E-value=1.2e-18  Score=136.95  Aligned_cols=126  Identities=19%  Similarity=0.321  Sum_probs=85.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ...++|+++|.+|+|||||+|+|++...........+.|..+..+..   + ..+.+|||||+........ ....+...
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~~-~~~~~~~~   90 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSKE-EKEKWQKL   90 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCChh-HHHHHHHH
Confidence            56689999999999999999999987522111224456666655432   2 3799999999876533221 11222221


Q ss_pred             Hh---hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           97 IG---MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        97 ~~---~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      +.   .....+|++++|+|++++++..+..++..+.. .+    .|+++|+||+|+...
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~-~~----~pviiv~nK~D~~~~  144 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE-RG----IPVLIVLTKADKLKK  144 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECcccCCH
Confidence            11   12335689999999997888888777776654 23    499999999998754

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.81  E-value=1.3e-18  Score=154.77  Aligned_cols=160  Identities=20%  Similarity=0.267  Sum_probs=113.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      +|+++|++|||||||+|+|++...... ...+++|++.....+. .++..+.+|||||+...   ...+...+......+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~t~d~~~~~~~-~~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~   75 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIV-SDTPGVTRDRKYGDAE-WGGREFILIDTGGIEED---DDGLDKQIREQAEIA   75 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCccee-cCCCCcccCceEEEEE-ECCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence            489999999999999999999874222 2346677777766665 47789999999998642   223444555555556


Q ss_pred             CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-c
Q 024985          101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN-R  179 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~  179 (259)
                      ...+|+++||+|+..+++..+..+.+++.+ .+    +|+++|+||+|..... .            ...+ ....+. .
T Consensus        76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~-~~----~piilVvNK~D~~~~~-~------------~~~~-~~~lg~~~  136 (429)
T TIGR03594        76 IEEADVILFVVDGREGLTPEDEEIAKWLRK-SG----KPVILVANKIDGKKED-A------------VAAE-FYSLGFGE  136 (429)
T ss_pred             HhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-hC----CCEEEEEECccCCccc-c------------cHHH-HHhcCCCC
Confidence            678899999999998899988888888876 33    4999999999987541 1            1111 122333 3


Q ss_pred             EEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          180 RVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ++..++...      .++.+|++.+...+..
T Consensus       137 ~~~vSa~~g------~gv~~ll~~i~~~l~~  161 (429)
T TIGR03594       137 PIPISAEHG------RGIGDLLDAILELLPE  161 (429)
T ss_pred             eEEEeCCcC------CChHHHHHHHHHhcCc
Confidence            444444332      6899999988877644

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.81  E-value=3.5e-18  Score=130.75  Aligned_cols=155  Identities=23%  Similarity=0.250  Sum_probs=99.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      .+|+++|++|+|||||+|++++....... ...++|......... ..+..+.+|||||+.+.......   ........
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~---~~~~~~~~   76 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVS-DIAGTTRDVIEESID-IGGIPVRLIDTAGIRETEDEIEK---IGIERARE   76 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEecc-CCCCCccceEEEEEE-eCCEEEEEEECCCcCCCcchHHH---HHHHHHHH
Confidence            57999999999999999999988742222 234455544444443 45678999999998765432111   11111223


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR  179 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (259)
                      ....+|++++|+|++++.+..+...+..   ..+    .|+++|+||+|+....  ..              ....+...
T Consensus        77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~----~~vi~v~nK~D~~~~~--~~--------------~~~~~~~~  133 (157)
T cd04164          77 AIEEADLVLFVIDASRGLDEEDLEILEL---PAD----KPIIVVLNKSDLLPDS--EL--------------LSLLAGKP  133 (157)
T ss_pred             HHhhCCEEEEEEECCCCCCHHHHHHHHh---hcC----CCEEEEEEchhcCCcc--cc--------------ccccCCCc
Confidence            3457799999999997666666544443   222    4999999999988651  11              12223344


Q ss_pred             EEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          180 RVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ++.+++...      .++.+|++.|.+.+
T Consensus       134 ~~~~Sa~~~------~~v~~l~~~l~~~~  156 (157)
T cd04164         134 IIAISAKTG------EGLDELKEALLELA  156 (157)
T ss_pred             eEEEECCCC------CCHHHHHHHHHHhh
Confidence            455554322      68999999887654

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.81  E-value=3.2e-18  Score=147.39  Aligned_cols=162  Identities=22%  Similarity=0.200  Sum_probs=101.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ..++|+++|.+|||||||+|+|++...+..  ...++|.++....+...++..+.+|||||+....  +....+.+...+
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~--~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l--~~~lie~f~~tl  263 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAA--DQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL--PHELVAAFRATL  263 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeec--cCCccccCCEEEEEEeCCCceEEEEecCcccccC--CHHHHHHHHHHH
Confidence            458999999999999999999999874322  2345566666555554467899999999985321  122333344333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGG-AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      . ....+|++|+|+|++++.+..+. .+...+... +. ...|+++|+||+|+...  ..+.            ..... 
T Consensus       264 e-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~--~~v~------------~~~~~-  325 (351)
T TIGR03156       264 E-EVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE--PRIE------------RLEEG-  325 (351)
T ss_pred             H-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh--HhHH------------HHHhC-
Confidence            2 35578999999999855554433 233444442 21 13499999999998643  1111            11111 


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      ...++.+++..      ..|+.+|++.|.+.
T Consensus       326 ~~~~i~iSAkt------g~GI~eL~~~I~~~  350 (351)
T TIGR03156       326 YPEAVFVSAKT------GEGLDLLLEAIAER  350 (351)
T ss_pred             CCCEEEEEccC------CCCHHHHHHHHHhh
Confidence            11234444432      26899999988654

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.81  E-value=1.1e-18  Score=140.71  Aligned_cols=191  Identities=16%  Similarity=0.202  Sum_probs=120.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+.+|+++|++|+|||||||+|+..+....  +..+.+++...+....+++..++||||||++++.....++...+..
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v--~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEV--SKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCcee--eecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHH
Confidence            45678899999999999999999996554222  2223333333333333566889999999999987655555555555


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC----------cccHHhhhCCCC
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDN----------DETLEDYLGPEC  165 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~----------~~~~~~~~~~~~  165 (259)
                      .+    +..|++++++++.++.-..|.+++..+.-...   .+++++|+|.+|...+.          ...+++++.. .
T Consensus       114 ~l----~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~---~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~-k  185 (296)
T COG3596         114 YL----PKLDLVLWLIKADDRALGTDEDFLRDVIILGL---DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE-K  185 (296)
T ss_pred             Hh----hhccEEEEeccCCCccccCCHHHHHHHHHhcc---CceeEEEEehhhhhccccccccccCCCCHHHHHHHHH-H
Confidence            54    45589999999987766666666665543222   25999999999987551          1344444432 1


Q ss_pred             CchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 024985          166 PKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAE  223 (259)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~  223 (259)
                      ...+.+++.. -.+++..+..      ..=++.+|...+...++.+-..+....+...
T Consensus       186 ~~~~~~~~q~-V~pV~~~~~r------~~wgl~~l~~ali~~lp~e~rs~~a~~~~d~  236 (296)
T COG3596         186 AEALGRLFQE-VKPVVAVSGR------LPWGLKELVRALITALPVEARSPLAARLQDE  236 (296)
T ss_pred             HHHHHHHHhh-cCCeEEeccc------cCccHHHHHHHHHHhCcccccchhhhhhhhH
Confidence            1222233332 1223333311      1258999999999999876665555544333

>cd01895 EngA2 EngA2 subfamily

Probab=99.80  E-value=3e-18  Score=133.14  Aligned_cols=126  Identities=21%  Similarity=0.225  Sum_probs=81.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH-HHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV-KCI   97 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~-~~~   97 (259)
                      .++|+++|.+|+|||||+|+|++........ .+++|......... .++..+.+|||||+.+.......+ +.+. ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~iiDtpG~~~~~~~~~~~-e~~~~~~~   78 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDVPFE-YDGKKYTLIDTAGIRRKGKVEEGI-EKYSVLRT   78 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceeeEEE-ECCeeEEEEECCCCccccchhccH-HHHHHHHH
Confidence            5789999999999999999999876432221 23334333333333 466789999999987542211111 1111 111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ......+|++++|+|+.++.+.....++..+.. .+    .|+++|+||+|+...
T Consensus        79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-~~----~~~iiv~nK~Dl~~~  128 (174)
T cd01895          79 LKAIERADVVLLVIDATEGITEQDLRIAGLILE-EG----KALVIVVNKWDLVEK  128 (174)
T ss_pred             HHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh-cC----CCEEEEEeccccCCc
Confidence            223457799999999987777666555554433 22    499999999998754

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.80  E-value=4.8e-18  Score=150.63  Aligned_cols=170  Identities=14%  Similarity=0.087  Sum_probs=105.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      ..|+|+|.+|||||||+|+|++....  ....+.+|..+....+. ..+..+.|+||||+.........+...+.+.+. 
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpk--IadypfTTl~P~lGvv~-~~~~~f~laDtPGliegas~g~gLg~~fLrhie-  235 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPK--IADYPFTTLVPNLGVVQ-AGDTRFTVADVPGLIPGASEGKGLGLDFLRHIE-  235 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCcc--ccccCcccccceEEEEE-ECCeEEEEEECCCCccccchhhHHHHHHHHHHH-
Confidence            47999999999999999999987642  23345566666655554 566789999999998654333344444544443 


Q ss_pred             cCCCccEEEEEEeCCCC----CCHhHHH-HHHHHHHHhc---------ccccCeEEEEEeCCCCCCCCcccHHhhhCCCC
Q 024985          100 AKDGIHAVLLVFSVRNR----FSEEGGA-AIHSLESLFG---------KKVFDYMIVVFTGGNELEDNDETLEDYLGPEC  165 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~----~~~~~~~-~l~~l~~~~~---------~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~  165 (259)
                         .+|++|+|+|++..    -...+.. +.+.|.....         .-..+|++||+||+|+.+.  ..+.+.     
T Consensus       236 ---radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~el~e~-----  305 (500)
T PRK12296        236 ---RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RELAEF-----  305 (500)
T ss_pred             ---hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HHHHHH-----
Confidence               45999999999631    1112222 2223433221         1124699999999998643  222221     


Q ss_pred             CchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985          166 PKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG  212 (259)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~  212 (259)
                         ++..+...+..++.+++..  .    .++.+|+..+.+++....
T Consensus       306 ---l~~~l~~~g~~Vf~ISA~t--g----eGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        306 ---VRPELEARGWPVFEVSAAS--R----EGLRELSFALAELVEEAR  343 (500)
T ss_pred             ---HHHHHHHcCCeEEEEECCC--C----CCHHHHHHHHHHHHHhhh
Confidence               2222333344444444432  2    789999999988887643

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.80  E-value=6.1e-18  Score=130.92  Aligned_cols=161  Identities=16%  Similarity=0.105  Sum_probs=94.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      .+|+++|++|||||||+|++++........  +..+.......+.. .....+.+|||||..           .+.....
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~~~~~   67 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYL--PTIGIDYGVKKVSVRNKEVRVNFFDLSGHP-----------EYLEVRN   67 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CccceeEEEEEEEECCeEEEEEEEECCccH-----------HHHHHHH
Confidence            379999999999999999999887532211  11111111112221 123478999999953           2222333


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc---cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK---KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~---~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ..+.++|++|+|+|++++.+... ..++..+.+....   ....|+++|+||+|+.......         .........
T Consensus        68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~  138 (168)
T cd04119          68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVS---------EDEGRLWAE  138 (168)
T ss_pred             HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccC---------HHHHHHHHH
Confidence            45678899999999985433222 3455555553332   1335999999999986321011         112233344


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ..+..++..++..  +    .++.++++.+.+.+
T Consensus       139 ~~~~~~~~~Sa~~--~----~gi~~l~~~l~~~l  166 (168)
T cd04119         139 SKGFKYFETSACT--G----EGVNEMFQTLFSSI  166 (168)
T ss_pred             HcCCeEEEEECCC--C----CCHHHHHHHHHHHH
Confidence            4444444444432  2    68999999876644

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01866 Rab2 Rab2 subfamily

Probab=99.80  E-value=1.2e-17  Score=129.90  Aligned_cols=161  Identities=13%  Similarity=0.077  Sum_probs=94.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ..+|+++|++|||||||+|++++.........+.+.  ......+... ....+.+|||||..           .+....
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~~~   70 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV--EFGARMITIDGKQIKLQIWDTAGQE-----------SFRSIT   70 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccce--eEEEEEEEECCEEEEEEEEECCCcH-----------HHHHHH
Confidence            479999999999999999999987752222212222  2221222211 12478999999932           233333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ......+|++++|+|++++-+..+ ..++..+.....  ...|+++|.||+|+.......         ....+.+....
T Consensus        71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~~~~~~---------~~~~~~~~~~~  139 (168)
T cd01866          71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLESRREVS---------YEEGEAFAKEH  139 (168)
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccCCC---------HHHHHHHHHHc
Confidence            445567899999999984333222 233333333222  234999999999987441111         11233444444


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      +..  +|..++..+    .++.+++..+.+.+.
T Consensus       140 ~~~--~~e~Sa~~~----~~i~~~~~~~~~~~~  166 (168)
T cd01866         140 GLI--FMETSAKTA----SNVEEAFINTAKEIY  166 (168)
T ss_pred             CCE--EEEEeCCCC----CCHHHHHHHHHHHHH
Confidence            433  344443333    789999988776654

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01865 Rab3 Rab3 subfamily

Probab=99.79  E-value=1.6e-17  Score=128.78  Aligned_cols=159  Identities=12%  Similarity=0.108  Sum_probs=94.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|++|||||||+|++.+........  +..+.......+. .++  ..+.+|||||..           .+....
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~l~Dt~g~~-----------~~~~~~   67 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFV--STVGIDFKVKTVF-RNDKRVKLQIWDTAGQE-----------RYRTIT   67 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeEEEEEEEE-ECCEEEEEEEEECCChH-----------HHHHHH
Confidence            589999999999999999999877522111  1111112212222 222  478999999943           222233


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+.++|++++|+|.++.-+... ..+++.+.....  ...|+++|+||+|+.+.....         ......+.+..
T Consensus        68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~~~~~~---------~~~~~~~~~~~  136 (165)
T cd01865          68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVILVGNKCDMEDERVVS---------SERGRQLADQL  136 (165)
T ss_pred             HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCCEEEEEECcccCcccccC---------HHHHHHHHHHc
Confidence            445678899999999974422221 234444433221  134899999999986541111         11233444444


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      +..  +|..++..+    .|+.+|++.+...+.
T Consensus       137 ~~~--~~~~Sa~~~----~gv~~l~~~l~~~~~  163 (165)
T cd01865         137 GFE--FFEASAKEN----INVKQVFERLVDIIC  163 (165)
T ss_pred             CCE--EEEEECCCC----CCHHHHHHHHHHHHH
Confidence            443  344444433    789999999887664

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.79  E-value=6.3e-18  Score=150.67  Aligned_cols=122  Identities=21%  Similarity=0.241  Sum_probs=92.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      ++|+++|++|||||||+|+|++....... ..+++|.+....... ..+..+.+|||||+.+..   ..+...+......
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~-~~~~~t~d~~~~~~~-~~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~   76 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVA-DTPGVTRDRIYGEAE-WLGREFILIDTGGIEPDD---DGFEKQIREQAEL   76 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCCcccceEEEEE-ECCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence            58999999999999999999998753332 245677766666555 567899999999987622   1233344444445


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE  151 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~  151 (259)
                      +...+|++|||+|+..+++..+..+.+++... +    .|+++|+||+|...
T Consensus        77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-~----~piilv~NK~D~~~  123 (435)
T PRK00093         77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-N----KPVILVVNKVDGPD  123 (435)
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCcc
Confidence            56678999999999878888888888887763 3    49999999999653

>cd01861 Rab6 Rab6 subfamily

Probab=99.79  E-value=1.5e-17  Score=128.10  Aligned_cols=157  Identities=13%  Similarity=0.082  Sum_probs=93.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|++|||||||+|++++......  ..+..+.+.....+. .++  ..+.+|||||..           .+....
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~l~~~D~~G~~-----------~~~~~~   66 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMY-LEDKTVRLQLWDTAGQE-----------RFRSLI   66 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHHHH
Confidence            3799999999999999999998876332  223333333333333 233  368999999942           222233


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ......+|++++|+|++++-+..+ ..++..+....+.  ..|+++|+||+|+.......         ......+.+..
T Consensus        67 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~~~~~~---------~~~~~~~~~~~  135 (161)
T cd01861          67 PSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSDKRQVS---------TEEGEKKAKEL  135 (161)
T ss_pred             HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhccccCccC---------HHHHHHHHHHh
Confidence            334567799999999985433322 2344444433332  35999999999985431111         11233344444


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      +..++..++.  .+    .++.+++..+.+.
T Consensus       136 ~~~~~~~Sa~--~~----~~v~~l~~~i~~~  160 (161)
T cd01861         136 NAMFIETSAK--AG----HNVKELFRKIASA  160 (161)
T ss_pred             CCEEEEEeCC--CC----CCHHHHHHHHHHh
Confidence            4333333333  22    6899999988654

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01878 HflX HflX subfamily

Probab=99.79  E-value=7.2e-18  Score=135.28  Aligned_cols=164  Identities=24%  Similarity=0.240  Sum_probs=98.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      .+.++|+++|++|||||||+|+|++.......  ....|.......+...++..+.+|||||+.+...  ......+...
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~  114 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAED--QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRST  114 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCC--ccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHH
Confidence            44589999999999999999999998743222  2233444444444433334899999999864322  1122223222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGG-AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      + ..+..+|++++|+|++++.+..+. .+.+.+......  ..|+++|+||+|+.+.  ....            .....
T Consensus       115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~--~~~viiV~NK~Dl~~~--~~~~------------~~~~~  177 (204)
T cd01878         115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAE--DIPMILVLNKIDLLDD--EELE------------ERLEA  177 (204)
T ss_pred             H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcC--CCCEEEEEEccccCCh--HHHH------------HHhhc
Confidence            2 234577999999999855544432 334445443221  2599999999998755  1111            11222


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      ....++..++...      .|+.++++.|...
T Consensus       178 ~~~~~~~~Sa~~~------~gi~~l~~~L~~~  203 (204)
T cd01878         178 GRPDAVFISAKTG------EGLDELLEAIEEL  203 (204)
T ss_pred             CCCceEEEEcCCC------CCHHHHHHHHHhh
Confidence            2223444444322      6899998887653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.79  E-value=1.8e-17  Score=128.72  Aligned_cols=160  Identities=16%  Similarity=0.071  Sum_probs=94.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+|+++|++|+|||||++++++.........+.+  .......+. .++  ..+.+|||||..           .+...
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~--~~~~~~~~~-~~~~~~~l~l~D~~g~~-----------~~~~~   68 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIG--IDFKIRTIE-LDGKKIKLQIWDTAGQE-----------RFRTI   68 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCcc--ceEEEEEEE-ECCEEEEEEEEeCCchH-----------HHHHH
Confidence            47999999999999999999998764221111111  122222222 233  478999999943           22222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ....+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+.+.....         ........+.
T Consensus        69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~---------~~~~~~~~~~  137 (167)
T cd01867          69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS--EDVERMLVGNKCDMEEKRVVS---------KEEGEALADE  137 (167)
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccCCC---------HHHHHHHHHH
Confidence            2334567899999999985433322 234444443222  234999999999987531111         1123344454


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .+..++..++.  .+    .++.+++..+.+.+.
T Consensus       138 ~~~~~~~~Sa~--~~----~~v~~~~~~i~~~~~  165 (167)
T cd01867         138 YGIKFLETSAK--AN----INVEEAFFTLAKDIK  165 (167)
T ss_pred             cCCEEEEEeCC--CC----CCHHHHHHHHHHHHH
Confidence            44444333333  32    689999988876553

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.79  E-value=1.4e-18  Score=137.68  Aligned_cols=165  Identities=16%  Similarity=0.264  Sum_probs=108.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccccc----------------CCCCCcceeeEEEEEE-eeCCcEEEEEeCCCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSK----------------AGSSGVTKTCEMQRTM-LKDGQVVNVIDTPGLF   80 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~T~~~~~~~~~-~~~~~~~~liDTPG~~   80 (259)
                      +.++|+++|+.++|||||+++|++.......                ....+.|......... ...+..+.+|||||..
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4579999999999999999999854421110                0012344444444333 2467899999999953


Q ss_pred             CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhh
Q 024985           81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDY  160 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~  160 (259)
                                 .+...+......+|++|+|+|+..++.....+.+..+.. .+.    |++||+||+|+..   ..+++.
T Consensus        82 -----------~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~-~~~----p~ivvlNK~D~~~---~~~~~~  142 (188)
T PF00009_consen   82 -----------DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE-LGI----PIIVVLNKMDLIE---KELEEI  142 (188)
T ss_dssp             -----------HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH-TT-----SEEEEEETCTSSH---HHHHHH
T ss_pred             -----------ceeecccceecccccceeeeecccccccccccccccccc-ccc----ceEEeeeeccchh---hhHHHH
Confidence                       233333334557799999999998899999888888876 443    8999999999882   344443


Q ss_pred             hCCCCCchHHHHHHHcCC----cEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          161 LGPECPKPLKEILQLCEN----RRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       161 ~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .++    ....+++..+.    .+.++..++..+    .|+.+|++.+.+.++
T Consensus       143 ~~~----~~~~l~~~~~~~~~~~~~vi~~Sa~~g----~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  143 IEE----IKEKLLKEYGENGEEIVPVIPISALTG----DGIDELLEALVELLP  187 (188)
T ss_dssp             HHH----HHHHHHHHTTSTTTSTEEEEEEBTTTT----BTHHHHHHHHHHHS-
T ss_pred             HHH----HHHHhccccccCccccceEEEEecCCC----CCHHHHHHHHHHhCc
Confidence            331    12244444432    233444444333    699999999988775

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04154 Arl2 Arl2 subfamily

Probab=99.79  E-value=8.5e-18  Score=131.33  Aligned_cols=156  Identities=13%  Similarity=0.133  Sum_probs=92.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+|+++|++|||||||++++++....  ..   ..|.......+. .++..+.+|||||...           +...
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~--~~---~~t~g~~~~~~~-~~~~~l~l~D~~G~~~-----------~~~~   74 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDID--TI---SPTLGFQIKTLE-YEGYKLNIWDVGGQKT-----------LRPY   74 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCC--Cc---CCccccceEEEE-ECCEEEEEEECCCCHH-----------HHHH
Confidence            34579999999999999999999987541  11   112222222233 3567899999999532           2222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ....+..+|++++|+|++++-+... ..++..+... ......|+++|+||+|+...  ...+         .+...+..
T Consensus        75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~--~~~~---------~~~~~~~~  142 (173)
T cd04154          75 WRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQE-ERLAGATLLILANKQDLPGA--LSEE---------EIREALEL  142 (173)
T ss_pred             HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcccccC--CCHH---------HHHHHhCc
Confidence            2334567899999999985422222 1222222111 01123599999999998654  1111         12222211


Q ss_pred             c---CCcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985          176 C---ENRRVLFDNKTKDAATRTEQVGKLISLVN  205 (259)
Q Consensus       176 ~---~~~~~~~~~~~~~~~~~~~~i~eLl~~i~  205 (259)
                      .   ...+.+|..++..+    .|+.++++++.
T Consensus       143 ~~~~~~~~~~~~~Sa~~g----~gi~~l~~~l~  171 (173)
T cd04154         143 DKISSHHWRIQPCSAVTG----EGLLQGIDWLV  171 (173)
T ss_pred             cccCCCceEEEeccCCCC----cCHHHHHHHHh
Confidence            1   22345666666555    79999998864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.78  E-value=2.1e-17  Score=154.91  Aligned_cols=187  Identities=19%  Similarity=0.166  Sum_probs=117.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ..++|+++|++|||||||+|+|++....... ...++|.+.....+. .++..+.+|||||+........  ..+....+
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-~~~gtT~d~~~~~~~-~~~~~~~liDTaG~~~~~~~~~--~~e~~~~~  524 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVN-DLAGTTRDPVDEIVE-IDGEDWLFIDTAGIKRRQHKLT--GAEYYSSL  524 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccC-CCCCCCcCcceeEEE-ECCCEEEEEECCCcccCcccch--hHHHHHHH
Confidence            4589999999999999999999998742222 234556555444333 5778899999999864322211  11211111


Q ss_pred             --hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           98 --GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        98 --~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                        ..+...+|++++|+|++.+.+..+..++..+.+ .+    .|+++|+||+|+.+.  ...+.+..     .+...+..
T Consensus       525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~-~~----~piIiV~NK~DL~~~--~~~~~~~~-----~~~~~l~~  592 (712)
T PRK09518        525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVD-AG----RALVLVFNKWDLMDE--FRRQRLER-----LWKTEFDR  592 (712)
T ss_pred             HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEEchhcCCh--hHHHHHHH-----HHHHhccC
Confidence              234567899999999998888888777776654 23    499999999998754  22221110     11111111


Q ss_pred             cCC-cEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 024985          176 CEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKK  226 (259)
Q Consensus       176 ~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~  226 (259)
                      ... .++..++  ..    ..|+.+|++.+.+.+.....+.-+..+...+++
T Consensus       593 ~~~~~ii~iSA--kt----g~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~  638 (712)
T PRK09518        593 VTWARRVNLSA--KT----GWHTNRLAPAMQEALESWDQRIPTGKLNAFLGK  638 (712)
T ss_pred             CCCCCEEEEEC--CC----CCCHHHHHHHHHHHHHHhcccCChHHHHHHHHH
Confidence            122 2223333  22    379999999999998876655555556555543

>cd04122 Rab14 Rab14 subfamily

Probab=99.78  E-value=2.5e-17  Score=127.72  Aligned_cols=156  Identities=13%  Similarity=0.135  Sum_probs=92.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEE--EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM--QRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~--~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      .+|+++|++|||||||++++.+......    .+.|.....  ..+. .++  ..+.+|||||..           .+..
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~-----------~~~~   66 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMAD----CPHTIGVEFGTRIIE-VNGQKIKLQIWDTAGQE-----------RFRA   66 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCC----CCcccceeEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHH
Confidence            6899999999999999999997764221    111222221  1122 233  368999999942           2233


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .....+.++|++|+|+|++++-+... ..++..+.....  ...|+++|.||+|+....  ..       .......+..
T Consensus        67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~~~--~~-------~~~~~~~~~~  135 (166)
T cd04122          67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEAQR--DV-------TYEEAKQFAD  135 (166)
T ss_pred             HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccc--Cc-------CHHHHHHHHH
Confidence            33445678899999999985433322 233333333222  235899999999986541  11       0123334444


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ..+..  ++..++..+    .|+.+++..+...+
T Consensus       136 ~~~~~--~~e~Sa~~~----~~i~e~f~~l~~~~  163 (166)
T cd04122         136 ENGLL--FLECSAKTG----ENVEDAFLETAKKI  163 (166)
T ss_pred             HcCCE--EEEEECCCC----CCHHHHHHHHHHHH
Confidence            44433  444444443    78999887776544

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.78  E-value=2.3e-17  Score=127.36  Aligned_cols=160  Identities=16%  Similarity=0.133  Sum_probs=95.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|++|||||||++++++......  ..+..+.......+. .++  ..+.+|||||..           .+....
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~-----------~~~~~~   66 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQ--YKSTIGVDFKTKTIE-VDGKRVKLQIWDTAGQE-----------RFRSIT   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEE-ECCEEEEEEEEECCChH-----------HHHHHH
Confidence            4799999999999999999998875221  112222222222233 233  478899999932           222233


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ......+|++++|+|+++..+... ..++..+......  ..|+++|+||+|+.......         ....+.+.+.+
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~--~~pivvv~nK~D~~~~~~~~---------~~~~~~~~~~~  135 (164)
T smart00175       67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADP--NVVIMLVGNKSDLEDQRQVS---------REEAEAFAEEH  135 (164)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcccccCCC---------HHHHHHHHHHc
Confidence            344567899999999984433332 2234444332222  35999999999976531011         12233445555


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +..++..+..  .+    .++.++++.|.+.+.+
T Consensus       136 ~~~~~e~Sa~--~~----~~i~~l~~~i~~~~~~  163 (164)
T smart00175      136 GLPFFETSAK--TN----TNVEEAFEELAREILK  163 (164)
T ss_pred             CCeEEEEeCC--CC----CCHHHHHHHHHHHHhh
Confidence            5444444433  32    6899999998876643

Rab GTPases are implicated in vesicle trafficking.

>PRK11058 GTPase HflX; Provisional

Probab=99.78  E-value=1.4e-17  Score=146.68  Aligned_cols=166  Identities=16%  Similarity=0.107  Sum_probs=103.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      .++|+++|.+|||||||+|+|++...+..  ...++|.+.....+.+.+...+.+|||||+...  .+......+...+ 
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~--~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl-  271 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAA--DQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATL-  271 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeec--cCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHH-
Confidence            46899999999999999999999876422  234556666555555444458899999998542  1223344454443 


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhHHH-HHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEGGA-AIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      .....+|++|+|+|++++.+..... +.+++... +. ...|+++|+||+|+....  . .         ....  ...+
T Consensus       272 ~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~-~~~pvIiV~NKiDL~~~~--~-~---------~~~~--~~~~  335 (426)
T PRK11058        272 QETRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DA-HEIPTLLVMNKIDMLDDF--E-P---------RIDR--DEEN  335 (426)
T ss_pred             HHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-cc-CCCCEEEEEEcccCCCch--h-H---------HHHH--HhcC
Confidence            3456889999999998655444432 23344443 21 135999999999986431  0 0         0100  1112


Q ss_pred             CcE-EEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          178 NRR-VLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       178 ~~~-~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      ... +.+++.  .+    .|+.+|++.|.+.+...
T Consensus       336 ~~~~v~ISAk--tG----~GIdeL~e~I~~~l~~~  364 (426)
T PRK11058        336 KPIRVWLSAQ--TG----AGIPLLFQALTERLSGE  364 (426)
T ss_pred             CCceEEEeCC--CC----CCHHHHHHHHHHHhhhc
Confidence            222 233332  22    78999999999888543

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.78  E-value=2.8e-17  Score=127.37  Aligned_cols=160  Identities=16%  Similarity=0.119  Sum_probs=93.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+|+++|++|||||||++++++......  ..++.+.......+. ..+  ..+.+|||||..           .+...
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~i~D~~G~~-----------~~~~~   67 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQE-----------RFRTI   67 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEE-ECCEEEEEEEEECCCcH-----------hHHHH
Confidence            36899999999999999999998764221  112222222222222 233  378999999943           22222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      .......+|++|+|+|+++.-+... ..++..+.....  ...|+++|+||+|+....  .+.       ....+...+.
T Consensus        68 ~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~--~~~-------~~~~~~~~~~  136 (166)
T cd01869          68 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTDKR--VVD-------YSEAQEFADE  136 (166)
T ss_pred             HHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEEChhccccc--CCC-------HHHHHHHHHH
Confidence            2334567899999999984332222 234444443221  124999999999976441  110       1123344444


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .+..++..++.  .+    .++.+++..|.+.+.
T Consensus       137 ~~~~~~~~Sa~--~~----~~v~~~~~~i~~~~~  164 (166)
T cd01869         137 LGIPFLETSAK--NA----TNVEQAFMTMAREIK  164 (166)
T ss_pred             cCCeEEEEECC--CC----cCHHHHHHHHHHHHH
Confidence            44444444443  32    689999998876553

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01864 Rab19 Rab19 subfamily

Probab=99.78  E-value=1.4e-17  Score=129.04  Aligned_cols=158  Identities=11%  Similarity=0.117  Sum_probs=94.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      .++|+++|++|+|||||++++.+........  ...+.......+. .++  ..+.+|||||..           .+...
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~i~D~~G~~-----------~~~~~   68 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG--NTIGVDFTMKTLE-IEGKRVKLQIWDTAGQE-----------RFRTI   68 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCC--CccceEEEEEEEE-ECCEEEEEEEEECCChH-----------HHHHH
Confidence            4799999999999999999998765422211  1111222222233 233  378999999932           22233


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      .......+|++++|+|+++.-+... ..++..+.....  ...|+++|+||+|+.......         ......+.+.
T Consensus        69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~---------~~~~~~~~~~  137 (165)
T cd01864          69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA--SNVVLLLIGNKCDLEEQREVL---------FEEACTLAEK  137 (165)
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccccC---------HHHHHHHHHH
Confidence            3344567899999999985433322 345555554322  234899999999987541111         1133344444


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      .+. ..++..++..+    .++.++++.+.+
T Consensus       138 ~~~-~~~~e~Sa~~~----~~v~~~~~~l~~  163 (165)
T cd01864         138 NGM-LAVLETSAKES----QNVEEAFLLMAT  163 (165)
T ss_pred             cCC-cEEEEEECCCC----CCHHHHHHHHHH
Confidence            332 22344444433    789999888765

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.78  E-value=2.7e-17  Score=147.45  Aligned_cols=177  Identities=18%  Similarity=0.201  Sum_probs=122.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCC--hHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD--SEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~--~~~~~~~~~~~   96 (259)
                      ..+|+++|.||+|||||+|+|+|.....  ..++|+|......... ..+..+.++|+||.++-...  ++.+.+++.  
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~V--gNwpGvTVEkkeg~~~-~~~~~i~ivDLPG~YSL~~~S~DE~Var~~l--   77 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKV--GNWPGVTVEKKEGKLK-YKGHEIEIVDLPGTYSLTAYSEDEKVARDFL--   77 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCcee--cCCCCeeEEEEEEEEE-ecCceEEEEeCCCcCCCCCCCchHHHHHHHH--
Confidence            3579999999999999999999998633  3468888888777766 67778999999999865432  233333322  


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                         ....+|+++.|+|++ .+...-.-.++.+ + +|.    |+++++|.+|.....          ...-..+++-+..
T Consensus        78 ---l~~~~D~ivnVvDAt-nLeRnLyltlQLl-E-~g~----p~ilaLNm~D~A~~~----------Gi~ID~~~L~~~L  137 (653)
T COG0370          78 ---LEGKPDLIVNVVDAT-NLERNLYLTLQLL-E-LGI----PMILALNMIDEAKKR----------GIRIDIEKLSKLL  137 (653)
T ss_pred             ---hcCCCCEEEEEcccc-hHHHHHHHHHHHH-H-cCC----CeEEEeccHhhHHhc----------CCcccHHHHHHHh
Confidence               246789999999998 5555444344433 3 454    999999999987552          2334566677777


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKG  227 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~~  227 (259)
                      +-++....+..      .+|+++|++.+.+....+.. ++....-++++++
T Consensus       138 GvPVv~tvA~~------g~G~~~l~~~i~~~~~~~~~-~~~~~y~~~ie~~  181 (653)
T COG0370         138 GVPVVPTVAKR------GEGLEELKRAIIELAESKTT-PREVDYGEEIEEE  181 (653)
T ss_pred             CCCEEEEEeec------CCCHHHHHHHHHHhcccccc-ccccccchHHHHH
Confidence            77665555543      37899999999887766654 3333333344433

>PRK04213 GTP-binding protein; Provisional

Probab=99.78  E-value=4.7e-17  Score=130.22  Aligned_cols=165  Identities=21%  Similarity=0.229  Sum_probs=95.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh----HHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS----EFVSKE   92 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~----~~~~~~   92 (259)
                      ...++|+++|++|||||||+|+|++... ... ..+++|......  . .  ..+.+|||||++....-.    +.+...
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~-~~~~~t~~~~~~--~-~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   79 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKV-RVG-KRPGVTRKPNHY--D-W--GDFILTDLPGFGFMSGVPKEVQEKIKDE   79 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccC-CCCceeeCceEE--e-e--cceEEEeCCccccccccCHHHHHHHHHH
Confidence            3457999999999999999999998774 222 233445443322  2 1  268999999975433222    222222


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCC-----------CHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh
Q 024985           93 IVKCIGMAKDGIHAVLLVFSVRNRF-----------SEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL  161 (259)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~-----------~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~  161 (259)
                      +..++......++++++|+|.+...           ...+..++..+.. .+    .|+++|+||+|+...  .  .+  
T Consensus        80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~----~p~iiv~NK~Dl~~~--~--~~--  148 (201)
T PRK04213         80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-LG----IPPIVAVNKMDKIKN--R--DE--  148 (201)
T ss_pred             HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-cC----CCeEEEEECccccCc--H--HH--
Confidence            2223333445678999999986321           1123344444443 22    499999999998654  1  10  


Q ss_pred             CCCCCchHHHHHHHcCC--c-----EEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          162 GPECPKPLKEILQLCEN--R-----RVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       162 ~~~~~~~l~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                            .+.++.+..+.  .     ..++..++    ... |+.+|++.|.+.+.+
T Consensus       149 ------~~~~~~~~~~~~~~~~~~~~~~~~~SA----~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        149 ------VLDEIAERLGLYPPWRQWQDIIAPISA----KKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             ------HHHHHHHHhcCCccccccCCcEEEEec----ccC-CHHHHHHHHHHhhcC
Confidence                  12223333322  1     11333333    234 899999998877654

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.78  E-value=8.6e-18  Score=132.66  Aligned_cols=161  Identities=19%  Similarity=0.186  Sum_probs=97.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCC--------------CCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAG--------------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS   86 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~--------------~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~   86 (259)
                      +|+++|.+|+|||||+|+|++.........              ..+.|......... ..+..+.+|||||..+.    
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~liDtpG~~~~----   75 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFE-WPDRRVNFIDTPGHEDF----   75 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEe-eCCEEEEEEeCCCcHHH----
Confidence            489999999999999999988765322100              11233333333333 34678999999996421    


Q ss_pred             HHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCC
Q 024985           87 EFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECP  166 (259)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~  166 (259)
                         ....    ..+...+|++++|+|+..+........+..+.. .    ..|+++|+||+|+...  ........    
T Consensus        76 ---~~~~----~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-~----~~~i~iv~nK~D~~~~--~~~~~~~~----  137 (189)
T cd00881          76 ---SSEV----IRGLSVSDGAILVVDANEGVQPQTREHLRIARE-G----GLPIIVAINKIDRVGE--EDLEEVLR----  137 (189)
T ss_pred             ---HHHH----HHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-C----CCCeEEEEECCCCcch--hcHHHHHH----
Confidence               1122    223346799999999986676666666665544 2    2499999999999864  23222111    


Q ss_pred             chHHHHHHHcC------------CcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          167 KPLKEILQLCE------------NRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       167 ~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                       .+++.++..+            ....+|..++..+    .++.+++..+...++
T Consensus       138 -~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g----~gi~~l~~~l~~~l~  187 (189)
T cd00881         138 -EIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTG----IGVEELLEAIVEHLP  187 (189)
T ss_pred             -HHHHHHccccccchhhhhcccCCcceEEEEecccC----cCHHHHHHHHHhhCC
Confidence             2222332221            1223343343333    689999998877653

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.78  E-value=3.4e-17  Score=126.34  Aligned_cols=160  Identities=16%  Similarity=0.121  Sum_probs=93.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      .+|+++|++|||||||+|++++.........+.+.+.......+. ..+..+.+|||||..           .+......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~D~~G~~-----------~~~~~~~~   69 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLD-DTTVKFEIWDTAGQE-----------RYRSLAPM   69 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCchH-----------HHHHHHHH
Confidence            689999999999999999999887533121112211111111111 223478999999932           22222233


Q ss_pred             cCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985          100 AKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN  178 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (259)
                      ...++|++++|+|+++.-+.. ...++..+......  ..|+++|+||+|+........         .....+....+.
T Consensus        70 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~~~~~~---------~~~~~~~~~~~~  138 (163)
T cd01860          70 YYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASP--NIIIALVGNKADLESKRQVST---------EEAQEYADENGL  138 (163)
T ss_pred             HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccccCcCCH---------HHHHHHHHHcCC
Confidence            456789999999997432222 23455555554322  348999999999774311111         123344444443


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      .+  +..++..+    .++.++++.+.+.+
T Consensus       139 ~~--~~~Sa~~~----~~v~~l~~~l~~~l  162 (163)
T cd01860         139 LF--FETSAKTG----ENVNELFTEIAKKL  162 (163)
T ss_pred             EE--EEEECCCC----CCHHHHHHHHHHHh
Confidence            33  44443333    68999999887654

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.78  E-value=2e-17  Score=155.00  Aligned_cols=163  Identities=20%  Similarity=0.203  Sum_probs=111.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ..++|+++|++|||||||+|+|++....... ..+++|++....... ..+..+.+|||||+....   +.+...+....
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~-~~~~~~~liDT~G~~~~~---~~~~~~~~~~~  348 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAE-WAGTDFKLVDTGGWEADV---EGIDSAIASQA  348 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEE-ECCEEEEEEeCCCcCCCC---ccHHHHHHHHH
Confidence            4578999999999999999999987642222 246677766665554 467789999999987422   12344455555


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      ..++..+|++|||+|++.+++..+..+.+.+.. .+    .|+++|+||+|+.... ..            ...... .+
T Consensus       349 ~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~-~~----~pvIlV~NK~D~~~~~-~~------------~~~~~~-lg  409 (712)
T PRK09518        349 QIAVSLADAVVFVVDGQVGLTSTDERIVRMLRR-AG----KPVVLAVNKIDDQASE-YD------------AAEFWK-LG  409 (712)
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-cC----CCEEEEEECcccccch-hh------------HHHHHH-cC
Confidence            556678899999999987888888878887765 23    4999999999976431 00            111111 12


Q ss_pred             C-cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          178 N-RRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       178 ~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      . .++..  ++..+    .|+.+|++.|.+.++.
T Consensus       410 ~~~~~~i--SA~~g----~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        410 LGEPYPI--SAMHG----RGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCCeEEE--ECCCC----CCchHHHHHHHHhccc
Confidence            1 23333  33333    7899999998877654

>cd04127 Rab27A Rab27a subfamily

Probab=99.77  E-value=6.9e-17  Score=126.86  Aligned_cols=163  Identities=12%  Similarity=0.095  Sum_probs=95.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee-----------CCcEEEEEeCCCCCCCCCCh
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK-----------DGQVVNVIDTPGLFDSSADS   86 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-----------~~~~~~liDTPG~~~~~~~~   86 (259)
                      ...+|+++|++|||||||++++.+.........+.+.  ......+...           ....+.+|||||..      
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------   74 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGI--DFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE------   74 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccce--EEEEEEEEEcCccccccccCCCEEEEEEEeCCChH------
Confidence            3479999999999999999999887642211111111  1111111111           12478999999932      


Q ss_pred             HHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCC
Q 024985           87 EFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPEC  165 (259)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~  165 (259)
                           .+.........++|++++|+|+++.-+..+ ..++..+..... ....|+++|+||+|+.+..  ..       .
T Consensus        75 -----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~--~v-------~  139 (180)
T cd04127          75 -----RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQR--QV-------S  139 (180)
T ss_pred             -----HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhcC--cc-------C
Confidence                 333344445678899999999985433333 234444433211 1234899999999987531  11       1


Q ss_pred             CchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          166 PKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ......+....+..  ++..++..+    .++.++++.+.+.+-
T Consensus       140 ~~~~~~~~~~~~~~--~~e~Sak~~----~~v~~l~~~l~~~~~  177 (180)
T cd04127         140 EEQAKALADKYGIP--YFETSAATG----TNVEKAVERLLDLVM  177 (180)
T ss_pred             HHHHHHHHHHcCCe--EEEEeCCCC----CCHHHHHHHHHHHHH
Confidence            12344455554433  344444333    789999998876553

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04113 Rab4 Rab4 subfamily

Probab=99.77  E-value=3.1e-17  Score=126.48  Aligned_cols=156  Identities=15%  Similarity=0.100  Sum_probs=92.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|++|||||||++++++........  +..+.......+. .++  ..+.+|||||..           .+....
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~l~D~~G~~-----------~~~~~~   66 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQ--HTIGVEFGSKIIR-VGGKRVKLQIWDTAGQE-----------RFRSVT   66 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CceeeeEEEEEEE-ECCEEEEEEEEECcchH-----------HHHHhH
Confidence            379999999999999999999877522211  1112112212222 223  478899999943           222222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ......+|++++|+|++++.+... ..++..+......  ..|+++|+||+|+....  ..       .......+....
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~~--~~-------~~~~~~~~~~~~  135 (161)
T cd04113          67 RSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASP--NIVVILVGNKSDLADQR--EV-------TFLEASRFAQEN  135 (161)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcchhc--cC-------CHHHHHHHHHHc
Confidence            334567899999999985444333 3344444433322  34999999999987531  11       112334445554


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      +..++..++  ..+    .++.++++.+..
T Consensus       136 ~~~~~~~Sa--~~~----~~i~~~~~~~~~  159 (161)
T cd04113         136 GLLFLETSA--LTG----ENVEEAFLKCAR  159 (161)
T ss_pred             CCEEEEEEC--CCC----CCHHHHHHHHHH
Confidence            544444443  333    789999988754

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.77  E-value=3.2e-17  Score=131.25  Aligned_cols=163  Identities=12%  Similarity=0.051  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCccee--eEEEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKT--CEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~--~~~~~~~~~--~~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      .+|+++|.+|||||||++++++......    ...|..  .....+...  ....+.+|||||..           .+..
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~----~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~-----------~~~~   65 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH----YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE-----------RFGG   65 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeEEEEEEEEEECCCCEEEEEEEECCCch-----------hhhh
Confidence            4799999999999999999998764221    112222  222222221  12478999999953           2222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhc--ccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFG--KKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI  172 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~--~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (259)
                      .....+.++|++|+|+|++++.+... ..++..+.....  .....|+++|+||+|+......         ....+..+
T Consensus        66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~---------~~~~~~~~  136 (201)
T cd04107          66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK---------DGEQMDQF  136 (201)
T ss_pred             hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccccc---------CHHHHHHH
Confidence            23345678899999999985443333 233444443221  1133599999999998632101         12234455


Q ss_pred             HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      .+..+. ..+|..++..+    .++.++++.+.+.+...
T Consensus       137 ~~~~~~-~~~~e~Sak~~----~~v~e~f~~l~~~l~~~  170 (201)
T cd04107         137 CKENGF-IGWFETSAKEG----INIEEAMRFLVKNILAN  170 (201)
T ss_pred             HHHcCC-ceEEEEeCCCC----CCHHHHHHHHHHHHHHh
Confidence            555442 12344444333    68999999988776543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04112 Rab26 Rab26 subfamily

Probab=99.77  E-value=5.3e-17  Score=128.94  Aligned_cols=163  Identities=13%  Similarity=0.111  Sum_probs=97.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|++|||||||++++.+........ ............+. .++  ..+.||||||-.           .+....
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~-----------~~~~~~   67 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNF-IATVGIDFRNKVVT-VDGVKVKLQIWDTAGQE-----------RFRSVT   67 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCc-CCcccceeEEEEEE-ECCEEEEEEEEeCCCcH-----------HHHHhh
Confidence            479999999999999999998876422111 11111111111111 233  478999999932           222222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ......+|++|+|+|+++..+... ..++..+.+....  ..|+++|+||+|+....  ..       .....+.+....
T Consensus        68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~~--~~-------~~~~~~~l~~~~  136 (191)
T cd04112          68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSGER--VV-------KREDGERLAKEY  136 (191)
T ss_pred             HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchhcc--cc-------CHHHHHHHHHHc
Confidence            334567899999999985433322 3455555554322  34999999999986431  11       112334455554


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG  212 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~  212 (259)
                      +..+  +..++..+    .++.+|+..|.+.+.+..
T Consensus       137 ~~~~--~e~Sa~~~----~~v~~l~~~l~~~~~~~~  166 (191)
T cd04112         137 GVPF--METSAKTG----LNVELAFTAVAKELKHRK  166 (191)
T ss_pred             CCeE--EEEeCCCC----CCHHHHHHHHHHHHHHhc
Confidence            4443  44444333    789999999988876653

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04140 ARHI_like ARHI subfamily

Probab=99.77  E-value=2e-17  Score=128.25  Aligned_cols=160  Identities=16%  Similarity=0.116  Sum_probs=93.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      .+|+++|.+|||||||++++++........++.+ .......... .....+.+|||||.....           .....
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~-----------~~~~~   68 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCS-KNICTLQITDTTGSHQFP-----------AMQRL   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcch-heEEEEEEEC-CEEEEEEEEECCCCCcch-----------HHHHH
Confidence            5899999999999999999998764222111111 1111111111 123478899999965321           11122


Q ss_pred             cCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhccc-ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKK-VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      ....+|++++|+|++++-+... ..+++.+.+..+.. ...|+++|+||+|+...  ..+.       ...........+
T Consensus        69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~-------~~~~~~~~~~~~  139 (165)
T cd04140          69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK--REVS-------SNEGAACATEWN  139 (165)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc--Ceec-------HHHHHHHHHHhC
Confidence            3456799999999985544432 45566666654322 33599999999998653  1111       011122223323


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      ..  +|..++..+    .++.++++.|.++
T Consensus       140 ~~--~~e~SA~~g----~~v~~~f~~l~~~  163 (165)
T cd04140         140 CA--FMETSAKTN----HNVQELFQELLNL  163 (165)
T ss_pred             Cc--EEEeecCCC----CCHHHHHHHHHhc
Confidence            23  445554443    7899999887654

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04124 RabL2 RabL2 subfamily

Probab=99.77  E-value=2.3e-17  Score=127.44  Aligned_cols=155  Identities=17%  Similarity=0.075  Sum_probs=91.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|.+|||||||++++++...........+.+  ....... .++  ..+.+|||||..           .+....
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~i~Dt~G~~-----------~~~~~~   66 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALT--LYKHNAK-FEGKTILVDFWDTAGQE-----------RFQTMH   66 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeE--EEEEEEE-ECCEEEEEEEEeCCCch-----------hhhhhh
Confidence            479999999999999999998776422211111111  1111111 233  368899999943           223333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+..+|++|+|+|++++.+..+ ..++..+.+..   ...|+++|+||+|+...  . ..         ....+.+..
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~~~--~-~~---------~~~~~~~~~  131 (161)
T cd04124          67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLDPS--V-TQ---------KKFNFAEKH  131 (161)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCchh--H-HH---------HHHHHHHHc
Confidence            445678899999999985544333 34555554422   13599999999997422  1 11         112223333


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      +..++  ..++..+    .++.++++.+.+.+.
T Consensus       132 ~~~~~--~~Sa~~~----~gv~~l~~~l~~~~~  158 (161)
T cd04124         132 NLPLY--YVSAADG----TNVVKLFQDAIKLAV  158 (161)
T ss_pred             CCeEE--EEeCCCC----CCHHHHHHHHHHHHH
Confidence            33333  3343333    789999998876554

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.77  E-value=3.6e-17  Score=125.47  Aligned_cols=156  Identities=20%  Similarity=0.235  Sum_probs=94.2

Q ss_pred             EEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCC
Q 024985           24 LVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDG  103 (259)
Q Consensus        24 l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (259)
                      |+|.+|+|||||+|++++......  ..+++|.......+. .++..+.+|||||+.+......  ...+....... ..
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~--~~~~~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~   74 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVG--NWPGVTVEKKEGRFK-LGGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK   74 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCccccc--CCCCcccccceEEEe-eCCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence            589999999999999999863222  234555555544444 4567899999999875432211  11222221111 57


Q ss_pred             ccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEE
Q 024985          104 IHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLF  183 (259)
Q Consensus       104 ~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  183 (259)
                      +|++++|+|+... . ....++..+.. .+    .|+++|+||+|+...  ....        .....+....+..++..
T Consensus        75 ~d~vi~v~d~~~~-~-~~~~~~~~~~~-~~----~~~iiv~NK~Dl~~~--~~~~--------~~~~~~~~~~~~~~~~i  137 (158)
T cd01879          75 PDLIVNVVDATNL-E-RNLYLTLQLLE-LG----LPVVVALNMIDEAEK--RGIK--------IDLDKLSELLGVPVVPT  137 (158)
T ss_pred             CcEEEEEeeCCcc-h-hHHHHHHHHHH-cC----CCEEEEEehhhhccc--ccch--------hhHHHHHHhhCCCeEEE
Confidence            8999999999842 2 22233333433 22    499999999998754  2111        12234444445444444


Q ss_pred             eCCCcccccchhHHHHHHHHHHHHH
Q 024985          184 DNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       184 ~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      +....      .++.++++.+..+.
T Consensus       138 Sa~~~------~~~~~l~~~l~~~~  156 (158)
T cd01879         138 SARKG------EGIDELKDAIAELA  156 (158)
T ss_pred             EccCC------CCHHHHHHHHHHHh
Confidence            44332      67889888877653

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=3.1e-17  Score=125.56  Aligned_cols=171  Identities=13%  Similarity=0.134  Sum_probs=118.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      +.-++|+|+|.+|||||-|+-.+.+........++.|+........+. .....+.||||+|-           +++...
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~-gk~iKlQIWDTAGQ-----------ERFrti   74 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELD-GKTIKLQIWDTAGQ-----------ERFRTI   74 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeec-ceEEEEEeeecccc-----------HHHhhh
Confidence            455899999999999999999999988755555555554444433322 23348999999993           356666


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ...+++++|+||+|+|++..-+... ..|+..+.+.....  .|.++|.||+|+.+...  +       .....+.+...
T Consensus        75 t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~--v-------~~~~a~~fa~~  143 (205)
T KOG0084|consen   75 TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRV--V-------STEEAQEFADE  143 (205)
T ss_pred             hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhhee--c-------CHHHHHHHHHh
Confidence            7788999999999999995544433 45666666644433  39999999999875421  1       12233455555


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCC
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQP  215 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~  215 (259)
                      .+.+. ++..+++++    .++++.+..+...+....+..
T Consensus       144 ~~~~~-f~ETSAK~~----~NVe~~F~~la~~lk~~~~~~  178 (205)
T KOG0084|consen  144 LGIPI-FLETSAKDS----TNVEDAFLTLAKELKQRKGLH  178 (205)
T ss_pred             cCCcc-eeecccCCc----cCHHHHHHHHHHHHHHhcccC
Confidence            55432 667777665    689999988888877765443

>cd01868 Rab11_like Rab11-like

Probab=99.77  E-value=6.2e-17  Score=125.27  Aligned_cols=158  Identities=15%  Similarity=0.093  Sum_probs=92.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+|+++|++|||||||+|++++......  ..+..+.......+. .++  ..+.+|||||..           .+...
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~l~D~~g~~-----------~~~~~   68 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLD--SKSTIGVEFATRSIQ-IDGKTIKAQIWDTAGQE-----------RYRAI   68 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEE-ECCEEEEEEEEeCCChH-----------HHHHH
Confidence            36899999999999999999998774222  122222222222233 233  368999999943           22222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      .......++++|+|+|+++..+..+ ..++..+......  ..|+++|+||+|+.......         ......+...
T Consensus        69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pi~vv~nK~Dl~~~~~~~---------~~~~~~~~~~  137 (165)
T cd01868          69 TSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVP---------TEEAKAFAEK  137 (165)
T ss_pred             HHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccccccCC---------HHHHHHHHHH
Confidence            2334567799999999984433332 2344444443221  24999999999986431111         1123333333


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      .+..+  +..++..+    .++.++++.+.+.
T Consensus       138 ~~~~~--~~~Sa~~~----~~v~~l~~~l~~~  163 (165)
T cd01868         138 NGLSF--IETSALDG----TNVEEAFKQLLTE  163 (165)
T ss_pred             cCCEE--EEEECCCC----CCHHHHHHHHHHH
Confidence            33333  33343333    7899999887654

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04109 Rab28 Rab28 subfamily

Probab=99.77  E-value=5e-17  Score=131.46  Aligned_cols=163  Identities=18%  Similarity=0.133  Sum_probs=97.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|.+|||||||+|.+++.....  ...+..+.+.....+...+  ...+.||||||..           .+....
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~--~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~-----------~~~~l~   67 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGK--SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS-----------IGGKML   67 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH-----------HHHHHH
Confidence            379999999999999999999876421  1111112222222222222  3578999999942           222223


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc-cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK-KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ...+..+|++|+|+|+++.-+... ..++..+.+.... ....|+++|+||+|+....  ..       .......+...
T Consensus        68 ~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~--~v-------~~~~~~~~~~~  138 (215)
T cd04109          68 DKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR--TV-------KDDKHARFAQA  138 (215)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc--cc-------CHHHHHHHHHH
Confidence            334668899999999985433332 3455666654432 1223789999999986431  11       11233445555


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .+..++..  ++..+    .++.++++.+...+..
T Consensus       139 ~~~~~~~i--SAktg----~gv~~lf~~l~~~l~~  167 (215)
T cd04109         139 NGMESCLV--SAKTG----DRVNLLFQQLAAELLG  167 (215)
T ss_pred             cCCEEEEE--ECCCC----CCHHHHHHHHHHHHHh
Confidence            44434333  33333    7899999998877654

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04158 ARD1 ARD1 subfamily

Probab=99.77  E-value=2.1e-17  Score=128.70  Aligned_cols=157  Identities=13%  Similarity=0.121  Sum_probs=94.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      +|+++|.+|||||||++++.+... . .   ..+|.......+. ..+..+.+|||||....           .......
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~-~-~---~~~T~~~~~~~~~-~~~~~i~l~Dt~G~~~~-----------~~~~~~~   63 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEF-M-Q---PIPTIGFNVETVE-YKNLKFTIWDVGGKHKL-----------RPLWKHY   63 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCC-C-C---cCCcCceeEEEEE-ECCEEEEEEECCCChhc-----------chHHHHH
Confidence            589999999999999999998753 1 1   1223333333333 46678999999996432           1122223


Q ss_pred             CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH---
Q 024985          101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL---  175 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~---  175 (259)
                      ...+|+++||+|++++-+..+  ...++...+...  ...|++||+||+|+...  ...++         ++.++..   
T Consensus        64 ~~~ad~ii~V~D~s~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~---------~~~~~~~~~~  130 (169)
T cd04158          64 YLNTQAVVFVVDSSHRDRVSE--AHSELAKLLTEKELRDALLLIFANKQDVAGA--LSVEE---------MTELLSLHKL  130 (169)
T ss_pred             hccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHH---------HHHHhCCccc
Confidence            457799999999984422211  223333322211  12499999999998643  22221         1122211   


Q ss_pred             -cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          176 -CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       176 -~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                       ++..+.++..++..+    .|+.++++.+.+.+.++
T Consensus       131 ~~~~~~~~~~~Sa~~g----~gv~~~f~~l~~~~~~~  163 (169)
T cd04158         131 CCGRSWYIQGCDARSG----MGLYEGLDWLSRQLVAA  163 (169)
T ss_pred             cCCCcEEEEeCcCCCC----CCHHHHHHHHHHHHhhc
Confidence             122334555565544    78999999998766654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd01850 CDC_Septin CDC/Septin

Probab=99.77  E-value=3e-17  Score=137.09  Aligned_cols=154  Identities=20%  Similarity=0.278  Sum_probs=100.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCC------CCCcceeeEEEEEEe-eCC--cEEEEEeCCCCCCCCCChHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAG------SSGVTKTCEMQRTML-KDG--QVVNVIDTPGLFDSSADSEFV   89 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~T~~~~~~~~~~-~~~--~~~~liDTPG~~~~~~~~~~~   89 (259)
                      .++|+++|++|+|||||+|+|++.........      ....|.......... .+|  ..+.+|||||+++.... ...
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~-~~~   82 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINN-SDC   82 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccc-hhh
Confidence            47999999999999999999999886544321      123333333222221 334  37999999999876532 222


Q ss_pred             HHHHHH--------HHh----------hcCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985           90 SKEIVK--------CIG----------MAKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL  150 (259)
Q Consensus        90 ~~~~~~--------~~~----------~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~  150 (259)
                      ++.+..        ++.          .....+|+++|+++.+ .++...|..+++.+..  +    .|+++|+||+|++
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~--~----v~vi~VinK~D~l  156 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK--R----VNIIPVIAKADTL  156 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc--c----CCEEEEEECCCcC
Confidence            233222        111          1123589999999987 4678888888888764  2    3999999999998


Q ss_pred             CCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985          151 EDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                      ..  .++..+.     ..+++.++..+..++.|...
T Consensus       157 ~~--~e~~~~k-----~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         157 TP--EELKEFK-----QRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             CH--HHHHHHH-----HHHHHHHHHcCCceECCCCC
Confidence            65  4444332     25666777777666666553

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.77  E-value=5.3e-17  Score=143.74  Aligned_cols=124  Identities=19%  Similarity=0.169  Sum_probs=83.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+|+++|++|||||||+|+|++.....+. ..+++|.+.....+. .++.++.+|||||+.+....-+...  + ..
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs-~~pgtTrd~~~~~i~-~~g~~v~l~DTaG~~~~~~~ie~~g--i-~~  275 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVS-DIKGTTRDVVEGDFE-LNGILIKLLDTAGIREHADFVERLG--I-EK  275 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcEEEEEEEEEE-ECCEEEEEeeCCCcccchhHHHHHH--H-HH
Confidence            35689999999999999999999987642222 235566665555454 5788999999999875421111111  1 11


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE  151 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~  151 (259)
                      ....+..+|++++|+|++++.+..+. ++..+.. .    ..|+++|+||+|+..
T Consensus       276 ~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~-~----~~piIlV~NK~Dl~~  324 (442)
T TIGR00450       276 SFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK-S----KKPFILVLNKIDLKI  324 (442)
T ss_pred             HHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh-C----CCCEEEEEECccCCC
Confidence            22345678999999999877666554 4443322 1    249999999999853

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.77  E-value=6.6e-17  Score=143.80  Aligned_cols=158  Identities=23%  Similarity=0.268  Sum_probs=101.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ..++|+++|.+|||||||+|+|++....... ..+++|.+.....+. .++.++.+|||||+.++..   .+...-....
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~-~~g~~i~l~DT~G~~~~~~---~ie~~gi~~~  288 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVT-DIAGTTRDVIEEHIN-LDGIPLRLIDTAGIRETDD---EVEKIGIERS  288 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcccccEEEEEE-ECCeEEEEEeCCCCCCCcc---HHHHHHHHHH
Confidence            4579999999999999999999997742222 235566655555444 5778999999999875321   1111101111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      ......+|++++|+|++++.+..+..++..   .    ...|+++|+||+|+...  ....               ....
T Consensus       289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~---~----~~~piiiV~NK~DL~~~--~~~~---------------~~~~  344 (449)
T PRK05291        289 REAIEEADLVLLVLDASEPLTEEDDEILEE---L----KDKPVIVVLNKADLTGE--IDLE---------------EENG  344 (449)
T ss_pred             HHHHHhCCEEEEEecCCCCCChhHHHHHHh---c----CCCCcEEEEEhhhcccc--chhh---------------hccC
Confidence            224567799999999986666555433332   1    12499999999998754  1110               1112


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..++.++...      ..|+.+|++.|.+.+..
T Consensus       345 ~~~i~iSAkt------g~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        345 KPVIRISAKT------GEGIDELREAIKELAFG  371 (449)
T ss_pred             CceEEEEeeC------CCCHHHHHHHHHHHHhh
Confidence            2334444432      26899999999988865

>cd04142 RRP22 RRP22 subfamily

Probab=99.77  E-value=7.2e-17  Score=128.78  Aligned_cols=174  Identities=11%  Similarity=0.037  Sum_probs=98.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcce-eeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTK-TCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~-~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      .+|+++|.+|||||||++++++.....  . ..+++. ......+. .++  ..+.+|||||........   ..++...
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~--~-~~pt~~~~~~~~~i~-~~~~~~~l~i~Dt~G~~~~~~~~---~~e~~~~   73 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPE--E-YIPTEHRRLYRPAVV-LSGRVYDLHILDVPNMQRYPGTA---GQEWMDP   73 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCc--c-cCCccccccceeEEE-ECCEEEEEEEEeCCCcccCCccc---hhHHHHH
Confidence            379999999999999999999876422  1 122221 11111222 344  368899999976432111   1122222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhc-ccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFG-KKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .......+|++|+|+|++++.+... ..+++.+.+... .....|+++|+||+|+....  ..       ....+..+..
T Consensus        74 ~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~--~~-------~~~~~~~~~~  144 (198)
T cd04142          74 RFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHR--FA-------PRHVLSVLVR  144 (198)
T ss_pred             HHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccc--cc-------cHHHHHHHHH
Confidence            2234567899999999985443332 334444444321 12235999999999986431  00       0112223322


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCC
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQ  214 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~  214 (259)
                      .. ..+.+|..++..+    .++.+|++.+...+-.+++.
T Consensus       145 ~~-~~~~~~e~Sak~g----~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         145 KS-WKCGYLECSAKYN----WHILLLFKELLISATTRGRS  179 (198)
T ss_pred             Hh-cCCcEEEecCCCC----CCHHHHHHHHHHHhhccCCC
Confidence            21 1233455555444    78999999887766555443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.77  E-value=1.8e-17  Score=131.99  Aligned_cols=117  Identities=17%  Similarity=0.253  Sum_probs=76.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC-cccccC-------------CCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRR-AFKSKA-------------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA   84 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~-~~~~~~-------------~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~   84 (259)
                      .++|+++|.+|+|||||+|+|++.. .+....             ...+.|.......+. ..+..+.+|||||..+   
T Consensus         2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~~~~l~DtpG~~~---   77 (194)
T cd01891           2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVT-YKDTKINIVDTPGHAD---   77 (194)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEE-ECCEEEEEEECCCcHH---
Confidence            3689999999999999999998631 111111             112333333333333 4567899999999642   


Q ss_pred             ChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           85 DSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                              +......++..+|++++|+|++.+.......++..+.. .+    .|+++|+||+|+...
T Consensus        78 --------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~-~~----~p~iiv~NK~Dl~~~  132 (194)
T cd01891          78 --------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE-LG----LKPIVVINKIDRPDA  132 (194)
T ss_pred             --------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH-cC----CCEEEEEECCCCCCC
Confidence                    22233334567799999999986555554444444432 22    389999999998643

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.77  E-value=3e-17  Score=130.37  Aligned_cols=137  Identities=17%  Similarity=0.241  Sum_probs=91.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccc--------------ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFK--------------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA   84 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~--------------~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~   84 (259)
                      ..+|+++|..++|||||+++|++.....              ......+.|.......+. .++..+.++||||+.    
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~----   76 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHA----   76 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec-CCCeEEEEEECcCHH----
Confidence            4689999999999999999998541100              000124555555544444 466789999999953    


Q ss_pred             ChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCC
Q 024985           85 DSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPE  164 (259)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~  164 (259)
                             .+...+......+|++++|+|+..+....+.+.+..+.. .+.   .++++|+||+|+...  ....+.+.  
T Consensus        77 -------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~-~~~---~~iIvviNK~D~~~~--~~~~~~~~--  141 (195)
T cd01884          77 -------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQ-VGV---PYIVVFLNKADMVDD--EELLELVE--  141 (195)
T ss_pred             -------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CcEEEEEeCCCCCCc--HHHHHHHH--
Confidence                   233333445567899999999987888888888887766 343   147899999998743  33333222  


Q ss_pred             CCchHHHHHHHcC
Q 024985          165 CPKPLKEILQLCE  177 (259)
Q Consensus       165 ~~~~l~~~~~~~~  177 (259)
                        ..++.++..++
T Consensus       142 --~~i~~~l~~~g  152 (195)
T cd01884         142 --MEVRELLSKYG  152 (195)
T ss_pred             --HHHHHHHHHhc
Confidence              24666666654

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.76  E-value=6.2e-17  Score=126.16  Aligned_cols=161  Identities=15%  Similarity=0.068  Sum_probs=94.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEE--EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM--QRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~--~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      +|+++|.+|||||||++++++..... ..   ..|....+  ..+. ..+  ..+.+|||||..           .+...
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~-~~---~~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~-----------~~~~~   65 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDK-NY---KATIGVDFEMERFE-ILGVPFSLQLWDTAGQE-----------RFKCI   65 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC-CC---CCceeeEEEEEEEE-ECCEEEEEEEEeCCChH-----------HHHhh
Confidence            79999999999999999999876421 11   12222221  2222 223  479999999943           23333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ....+.++|++++|+|+++.-+.. ...++..+.+... +...|+++|.||+|+...  ....     ........+...
T Consensus        66 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~--~~~~-----~~~~~~~~~~~~  137 (170)
T cd04108          66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKEND-PSSVLLFLVGTKKDLSSP--AQYA-----LMEQDAIKLAAE  137 (170)
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEChhcCcc--cccc-----ccHHHHHHHHHH
Confidence            344567889999999997432222 2334444333211 112478999999997543  1110     001122334444


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      .+..++  ..++..+    .++.++++.+..++.+.
T Consensus       138 ~~~~~~--e~Sa~~g----~~v~~lf~~l~~~~~~~  167 (170)
T cd04108         138 MQAEYW--SVSALSG----ENVREFFFRVAALTFEL  167 (170)
T ss_pred             cCCeEE--EEECCCC----CCHHHHHHHHHHHHHHc
Confidence            444433  3333333    78999999998887654

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.76  E-value=2.6e-17  Score=131.29  Aligned_cols=172  Identities=19%  Similarity=0.146  Sum_probs=103.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCC---cceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSG---VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~---~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      .+|+++|++|+|||||+|+|+|......+..+.+   +|.....+  .......+.+|||||+.+.....+.+..    .
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~l~l~DtpG~~~~~~~~~~~l~----~   75 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPY--PHPKFPNVTLWDLPGIGSTAFPPDDYLE----E   75 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceee--ecCCCCCceEEeCCCCCcccCCHHHHHH----H
Confidence            6899999999999999999999654332222222   22222221  1112347899999999865443322221    1


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcc-------cHHhhhCCCCCchH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDE-------TLEDYLGPECPKPL  169 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~-------~~~~~~~~~~~~~l  169 (259)
                        ..+.++|++++|.+  .+++..+..+++.+... +.    |+++|+||+|+..+.+.       ..++++.+ ....+
T Consensus        76 --~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~~----~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~-i~~~~  145 (197)
T cd04104          76 --MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-GK----KFYFVRTKVDRDLSNEQRSKPRSFNREQVLQE-IRDNC  145 (197)
T ss_pred             --hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-CC----CEEEEEecccchhhhhhccccccccHHHHHHH-HHHHH
Confidence              23457788888754  37888898999988874 43    99999999999643211       12222221 11233


Q ss_pred             HHHHHHcC---CcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          170 KEILQLCE---NRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       170 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      ...+...+   ..+++.+.....    .-++..|.+.+...+++.
T Consensus       146 ~~~~~~~~~~~p~v~~vS~~~~~----~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         146 LENLQEAGVSEPPVFLVSNFDPS----DYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             HHHHHHcCCCCCCEEEEeCCChh----hcChHHHHHHHHHHhhHH
Confidence            33333322   244445544322    257888888888877763

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.76  E-value=4.9e-17  Score=128.25  Aligned_cols=163  Identities=10%  Similarity=0.061  Sum_probs=91.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ..+|+++|.+|||||||++++++...... ..+.+.+............+..+.+|||||..           .+.....
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-----------~~~~~~~   70 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE-----------KLRPLWK   70 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcH-----------hHHHHHH
Confidence            47899999999999999999987664211 11112111111111111134689999999953           2222223


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH---
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ---  174 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~---  174 (259)
                      ..+..+|++++|+|+++.-+... ..++..+..... ....|++||+||+|+...  ...++         +...+.   
T Consensus        71 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~--~~~~~---------~~~~~~~~~  138 (183)
T cd04152          71 SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNA--LSVSE---------VEKLLALHE  138 (183)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCcccc--CCHHH---------HHHHhCccc
Confidence            34567899999999984322221 123333332211 123599999999998643  11111         111111   


Q ss_pred             HcC-CcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          175 LCE-NRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       175 ~~~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ... ..+.++..++.++    .|+.+|+..|.+.+.
T Consensus       139 ~~~~~~~~~~~~SA~~~----~gi~~l~~~l~~~l~  170 (183)
T cd04152         139 LSASTPWHVQPACAIIG----EGLQEGLEKLYEMIL  170 (183)
T ss_pred             cCCCCceEEEEeecccC----CCHHHHHHHHHHHHH
Confidence            111 1233555555544    799999999877664

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01890 LepA LepA subfamily

Probab=99.76  E-value=1.2e-17  Score=131.10  Aligned_cols=158  Identities=17%  Similarity=0.143  Sum_probs=91.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccc------cC-------CCCCcceeeEEEEEEe----eCCcEEEEEeCCCCCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKS------KA-------GSSGVTKTCEMQRTML----KDGQVVNVIDTPGLFDS   82 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~------~~-------~~~~~T~~~~~~~~~~----~~~~~~~liDTPG~~~~   82 (259)
                      ++|+++|.+|+|||||++++++......      ..       ...+.|.........+    ..+..+.+|||||..+.
T Consensus         1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   80 (179)
T cd01890           1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF   80 (179)
T ss_pred             CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence            4799999999999999999987431100      00       0112232222222211    23457889999997532


Q ss_pred             CCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC
Q 024985           83 SADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~  162 (259)
                                 ......++.++|++|+|+|++.+.+..+...+..+.. .    ..|+++|+||+|+...  . ..    
T Consensus        81 -----------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-~----~~~iiiv~NK~Dl~~~--~-~~----  137 (179)
T cd01890          81 -----------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE-N----NLEIIPVINKIDLPSA--D-PE----  137 (179)
T ss_pred             -----------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-c----CCCEEEEEECCCCCcC--C-HH----
Confidence                       1222233456799999999986666555444443322 2    2489999999997543  1 11    


Q ss_pred             CCCCchHHHHHHHcCCc-EEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          163 PECPKPLKEILQLCENR-RVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       163 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                          ....++.+..+.. ..+|..++..+    .++.+|++.+...+
T Consensus       138 ----~~~~~~~~~~~~~~~~~~~~Sa~~g----~gi~~l~~~l~~~~  176 (179)
T cd01890         138 ----RVKQQIEDVLGLDPSEAILVSAKTG----LGVEDLLEAIVERI  176 (179)
T ss_pred             ----HHHHHHHHHhCCCcccEEEeeccCC----CCHHHHHHHHHhhC
Confidence                1122333333321 12444454443    78999999887654

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.76  E-value=1.6e-17  Score=128.74  Aligned_cols=159  Identities=10%  Similarity=0.050  Sum_probs=89.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccC--CCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKA--GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~--~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      +|+++|++|+|||||+|+|++......+.  .....|.......+. .++..+.+|||||...           +.....
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~-----------~~~~~~   68 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIE-VGNARLKFWDLGGQES-----------LRSLWD   68 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEE-ECCEEEEEEECCCChh-----------hHHHHH
Confidence            58999999999999999998754311111  112233333343344 4678999999999642           222223


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCc-ccHHhhhCCCCCchHHHHHHH
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDND-ETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~-~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ..+.++|++++|+|+++.-+..  ....++...+..  ....|+++|+||+|+..... ..+.+++.        ...+.
T Consensus        69 ~~~~~~~~~v~vvd~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~--------~~~~~  138 (167)
T cd04160          69 KYYAECHAIIYVIDSTDRERFE--ESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQ--------DKAEE  138 (167)
T ss_pred             HHhCCCCEEEEEEECchHHHHH--HHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhc--------ccccc
Confidence            3456789999999987332111  122233332221  12359999999999765411 11222221        11111


Q ss_pred             cC-CcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985          176 CE-NRRVLFDNKTKDAATRTEQVGKLISLVN  205 (259)
Q Consensus       176 ~~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~  205 (259)
                      .+ ....++..++..+    .|+.+++++|.
T Consensus       139 ~~~~~~~~~~~Sa~~g----~gv~e~~~~l~  165 (167)
T cd04160         139 IGRRDCLVLPVSALEG----TGVREGIEWLV  165 (167)
T ss_pred             ccCCceEEEEeeCCCC----cCHHHHHHHHh
Confidence            11 1223455554443    78999998875

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04120 Rab12 Rab12 subfamily

Probab=99.76  E-value=5.3e-17  Score=129.71  Aligned_cols=160  Identities=13%  Similarity=0.161  Sum_probs=97.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      .|+++|.+|||||||++++...... ... .+..+.......+. .++  ..+.+|||||..           .+.....
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~-~~~-~~Ti~~~~~~~~i~-~~~~~v~l~iwDtaGqe-----------~~~~l~~   67 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFC-EAC-KSGVGVDFKIKTVE-LRGKKIRLQIWDTAGQE-----------RFNSITS   67 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCC-CcC-CCcceeEEEEEEEE-ECCEEEEEEEEeCCCch-----------hhHHHHH
Confidence            6899999999999999999876642 111 11111222222233 344  578999999943           2333334


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      .++.++|++|+|+|++++-+... ..+++.+......  ..|+++|.||+|+...  ..+.       ......+.....
T Consensus        68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~--~~piilVgNK~DL~~~--~~v~-------~~~~~~~a~~~~  136 (202)
T cd04120          68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCETD--REIS-------RQQGEKFAQQIT  136 (202)
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccccc--cccC-------HHHHHHHHHhcC
Confidence            56778899999999986544443 3445555443322  3499999999998643  1111       111222333321


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                       ...+|..++.++    .++.++++.+...+..
T Consensus       137 -~~~~~etSAktg----~gV~e~F~~l~~~~~~  164 (202)
T cd04120         137 -GMRFCEASAKDN----FNVDEIFLKLVDDILK  164 (202)
T ss_pred             -CCEEEEecCCCC----CCHHHHHHHHHHHHHH
Confidence             234556666554    7999999988776644

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04157 Arl6 Arl6 subfamily

Probab=99.76  E-value=2.7e-17  Score=126.79  Aligned_cols=155  Identities=12%  Similarity=0.070  Sum_probs=88.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      +|+++|.+|||||||++++++...+.....   .|.......+. ..+..+.+|||||...           +......+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~-~~~~~~~l~Dt~G~~~-----------~~~~~~~~   65 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFE-KGNLSFTAFDMSGQGK-----------YRGLWEHY   65 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEE-ECCEEEEEEECCCCHh-----------hHHHHHHH
Confidence            489999999999999999998753222211   12112222222 4567899999999542           22222334


Q ss_pred             CCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhc-ccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH--H-
Q 024985          101 KDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFG-KKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ--L-  175 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~--~-  175 (259)
                      +.++|++|+|+|++++.+... ..++..+.+... .....|+++|+||+|+...  ....++         ...+.  . 
T Consensus        66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~---------~~~l~~~~~  134 (162)
T cd04157          66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKI---------TQLLGLENI  134 (162)
T ss_pred             HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHH---------HHHhCCccc
Confidence            567899999999985433221 223333322111 0123599999999998654  111111         11111  1 


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVN  205 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~  205 (259)
                      ....+.+|..++..+    .|+.++++.|.
T Consensus       135 ~~~~~~~~~~Sa~~g----~gv~~~~~~l~  160 (162)
T cd04157         135 KDKPWHIFASNALTG----EGLDEGVQWLQ  160 (162)
T ss_pred             cCceEEEEEeeCCCC----CchHHHHHHHh
Confidence            112233555555444    79999998875

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.76  E-value=9.5e-17  Score=124.00  Aligned_cols=163  Identities=21%  Similarity=0.305  Sum_probs=98.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh---HHHHHHHHHHHh
Q 024985           22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS---EFVSKEIVKCIG   98 (259)
Q Consensus        22 I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~---~~~~~~~~~~~~   98 (259)
                      |+++|.+|+|||||+|+|++...........+.|.......    ....+.+|||||+.......   ..+...+..++ 
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~-   76 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFN----VNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL-   76 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEE----ccCeEEEecCCCccccccCHHHHHHHHHHHHHHH-
Confidence            78999999999999999995443333333444554443332    22389999999987653321   11222222222 


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH-HcC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ-LCE  177 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~  177 (259)
                      .....++++++|+|.+...+..+..++.++.. .+    .|+++|+||+|....  ........     .+...++ ...
T Consensus        77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-~~----~~vi~v~nK~D~~~~--~~~~~~~~-----~~~~~l~~~~~  144 (170)
T cd01876          77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-LG----IPFLVVLTKADKLKK--SELAKALK-----EIKKELKLFEI  144 (170)
T ss_pred             HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH-cC----CCEEEEEEchhcCCh--HHHHHHHH-----HHHHHHHhccC
Confidence            23345688999999986666666667777765 33    399999999998754  22222111     2222332 122


Q ss_pred             -CcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          178 -NRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       178 -~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                       ..++.+++...      .++.++++.+.++
T Consensus       145 ~~~~~~~Sa~~~------~~~~~l~~~l~~~  169 (170)
T cd01876         145 DPPIILFSSLKG------QGIDELRALIEKW  169 (170)
T ss_pred             CCceEEEecCCC------CCHHHHHHHHHHh
Confidence             23444444332      6789998888764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.76  E-value=4.8e-17  Score=126.28  Aligned_cols=156  Identities=17%  Similarity=0.090  Sum_probs=92.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe---eCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML---KDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~---~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      .+|+++|++|||||||+++++.......    ...|..........   .....+.+|||||......           .
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~   65 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG-----------L   65 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC----CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc-----------c
Confidence            3799999999999999999986553111    11222222222211   1234789999999643211           1


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ....+..+|++|+|+|++++.+... ..++..+....+   ..|+++|+||+|+...  . .        ......+.+.
T Consensus        66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~--~-~--------~~~~~~~~~~  131 (166)
T cd00877          66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR--K-V--------KAKQITFHRK  131 (166)
T ss_pred             cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc--c-C--------CHHHHHHHHH
Confidence            1223457899999999985443332 234555554332   4599999999998632  1 1        1111122222


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..  ..+|..++..+    .++.++++.+.+.+.+
T Consensus       132 ~~--~~~~e~Sa~~~----~~v~~~f~~l~~~~~~  160 (166)
T cd00877         132 KN--LQYYEISAKSN----YNFEKPFLWLARKLLG  160 (166)
T ss_pred             cC--CEEEEEeCCCC----CChHHHHHHHHHHHHh
Confidence            22  23444444443    7899999998876654

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.76  E-value=8.3e-18  Score=131.31  Aligned_cols=162  Identities=20%  Similarity=0.170  Sum_probs=90.7

Q ss_pred             EEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCC
Q 024985           24 LVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD-GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKD  102 (259)
Q Consensus        24 l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~  102 (259)
                      ++|++|||||||+|+|++.... . ....++|..+...... .+ +..+.+|||||+.......+.+...+..    .+.
T Consensus         1 iiG~~~~GKStll~~l~~~~~~-~-~~~~~~t~~~~~~~~~-~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~----~~~   73 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPK-V-ANYPFTTLEPNLGVVE-VPDGARIQVADIPGLIEGASEGRGLGNQFLA----HIR   73 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCcc-c-cCCCceeecCcceEEE-cCCCCeEEEEeccccchhhhcCCCccHHHHH----HHh
Confidence            5899999999999999998751 1 1233455555444444 45 7899999999986432211111222222    234


Q ss_pred             CccEEEEEEeCCCCC------CHhH-HHHHHHHHHHhcc-----cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHH
Q 024985          103 GIHAVLLVFSVRNRF------SEEG-GAAIHSLESLFGK-----KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLK  170 (259)
Q Consensus       103 ~~~~il~v~d~~~~~------~~~~-~~~l~~l~~~~~~-----~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~  170 (259)
                      ++|++++|+|+.+..      +..+ ..+...+......     -...|+++|+||+|+...  .......       ..
T Consensus        74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~-------~~  144 (176)
T cd01881          74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--EELEEEL-------VR  144 (176)
T ss_pred             ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--hHHHHHH-------HH
Confidence            579999999998442      2222 2233333321110     023599999999998755  2222211       01


Q ss_pred             HHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          171 EILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      .........++..++.  .    ..++.+|++.+..+
T Consensus       145 ~~~~~~~~~~~~~Sa~--~----~~gl~~l~~~l~~~  175 (176)
T cd01881         145 ELALEEGAEVVPISAK--T----EEGLDELIRAIYEL  175 (176)
T ss_pred             HHhcCCCCCEEEEehh--h----hcCHHHHHHHHHhh
Confidence            1111222333333332  2    26899998877553

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01863 Rab18 Rab18 subfamily

Probab=99.76  E-value=6e-17  Score=124.81  Aligned_cols=158  Identities=16%  Similarity=0.095  Sum_probs=91.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      .+|+++|++|||||||+|++++...........+.+.......+. .....+.+|||||...           +......
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~-----------~~~~~~~   68 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVD-GKKVKLAIWDTAGQER-----------FRTLTSS   68 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEEC-CEEEEEEEEECCCchh-----------hhhhhHH
Confidence            479999999999999999999876522222222222222211111 1224789999999532           2222233


Q ss_pred             cCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN  178 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (259)
                      ....+|++++|+|+++.-+... ..++..+.... .....|+++|+||+|+.... ...+         ....+....+.
T Consensus        69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~~~iv~nK~D~~~~~-~~~~---------~~~~~~~~~~~  137 (161)
T cd01863          69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYS-TNNDIVKMLVGNKIDKENRE-VTRE---------EGLKFARKHNM  137 (161)
T ss_pred             HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhC-CCCCCcEEEEEECCcccccc-cCHH---------HHHHHHHHcCC
Confidence            4567899999999984433332 23444454432 23345899999999987331 1111         22333444333


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      .  ++..++..+    .|+.++++.+.+
T Consensus       138 ~--~~~~Sa~~~----~gi~~~~~~~~~  159 (161)
T cd01863         138 L--FIETSAKTR----DGVQQAFEELVE  159 (161)
T ss_pred             E--EEEEecCCC----CCHHHHHHHHHH
Confidence            3  344443333    689999887654

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd00154 Rab Rab family

Probab=99.76  E-value=4.3e-17  Score=124.55  Aligned_cols=157  Identities=17%  Similarity=0.125  Sum_probs=91.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      .+|+++|++|||||||+|++++.........+.+.+......... .....+.+|||||..           .+......
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~D~~g~~-----------~~~~~~~~   68 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEID-GKTVKLQIWDTAGQE-----------RFRSITPS   68 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEEC-CEEEEEEEEecCChH-----------HHHHHHHH
Confidence            479999999999999999999887633311111222211111111 123578999999953           22223334


Q ss_pred             cCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN  178 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (259)
                      ....+|++++|+|+++.-+... ..++..+.....  ...|+++|+||+|...+....         ...++.+....+.
T Consensus        69 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~---------~~~~~~~~~~~~~  137 (159)
T cd00154          69 YYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLEDQRQVS---------TEEAQQFAKENGL  137 (159)
T ss_pred             HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEccccccccccc---------HHHHHHHHHHcCC
Confidence            4567899999999984322221 234444444321  134999999999986321111         2234445555444


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHH
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVN  205 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~  205 (259)
                      .++..++..  +    .++.+++..|.
T Consensus       138 ~~~~~sa~~--~----~~i~~~~~~i~  158 (159)
T cd00154         138 LFFETSAKT--G----ENVEELFQSLA  158 (159)
T ss_pred             eEEEEecCC--C----CCHHHHHHHHh
Confidence            444444432  2    68899888764

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.76  E-value=6.4e-17  Score=124.42  Aligned_cols=156  Identities=15%  Similarity=0.130  Sum_probs=90.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|++|||||||+|++++...... .  .+++......... .++  ..+.+|||||...           +....
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~-~--~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~~l~   66 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDE-Y--DPTIEDSYRKQVV-IDGETCLLDILDTAGQEE-----------YSAMR   66 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCC-c--CCcchheEEEEEE-ECCEEEEEEEEECCCCcc-----------hHHHH
Confidence            5899999999999999999998764221 1  1111111111112 333  3577899999542           12222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+..+|++++|+|++++-+..+ ..++..+.+... ....|+++|+||+|+.... ..         ......+.+..
T Consensus        67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~-~~---------~~~~~~~~~~~  135 (162)
T cd04138          67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAART-VS---------SRQGQDLAKSY  135 (162)
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccce-ec---------HHHHHHHHHHh
Confidence            234456799999999984433222 233444444221 2235999999999986531 11         11233334444


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      +..  ++..++..+    .|+.++++.+.+.
T Consensus       136 ~~~--~~~~Sa~~~----~gi~~l~~~l~~~  160 (162)
T cd04138         136 GIP--YIETSAKTR----QGVEEAFYTLVRE  160 (162)
T ss_pred             CCe--EEEecCCCC----CCHHHHHHHHHHH
Confidence            433  344444433    7899999887654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.76  E-value=6.7e-17  Score=124.92  Aligned_cols=156  Identities=12%  Similarity=0.115  Sum_probs=89.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCcceeeEE--EEEEe--eCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRR-AFKSKAGSSGVTKTCEM--QRTML--KDGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~-~~~~~~~~~~~T~~~~~--~~~~~--~~~~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      .+|+++|.+|||||||++++.+.. .+....   ..|.....  ..+..  .....+.+|||||..           .+.
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~   66 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNY---LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE-----------LYS   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccC---CCceEEEEEEEEEEeCCCCEEEEEEEECCCHH-----------HHH
Confidence            379999999999999999998542 222221   11221111  11211  223589999999932           222


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      .........+|++++|+|+++..+... ..+++.+....   ...|+++|+||+|+.+.  ..+.       ....+.+.
T Consensus        67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~-------~~~~~~~~  134 (164)
T cd04101          67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK--AEVT-------DAQAQAFA  134 (164)
T ss_pred             HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc--cCCC-------HHHHHHHH
Confidence            333344567899999999985433222 23444444321   23599999999998644  1111       01112222


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      ...+..  ++..++..+    .|+.++++.+.+.
T Consensus       135 ~~~~~~--~~~~Sa~~~----~gi~~l~~~l~~~  162 (164)
T cd04101         135 QANQLK--FFKTSALRG----VGYEEPFESLARA  162 (164)
T ss_pred             HHcCCe--EEEEeCCCC----CChHHHHHHHHHH
Confidence            232323  344444333    7899999887764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04123 Rab21 Rab21 subfamily

Probab=99.76  E-value=7.1e-17  Score=124.16  Aligned_cols=159  Identities=12%  Similarity=0.071  Sum_probs=92.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      .+|+++|++|+|||||+|++++......  .....+.......+... ....+.+|||||..           .+.....
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----------~~~~~~~   67 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEK--HESTTQASFFQKTVNIGGKRIDLAIWDTAGQE-----------RYHALGP   67 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC--cCCccceeEEEEEEEECCEEEEEEEEECCchH-----------HHHHhhH
Confidence            3799999999999999999998765221  11122222222222211 12368999999942           1122222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      .....+|++++|+|++++-+... ..+++.+......  ..|+++|+||+|+...  ..+.       ...+..+....+
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~--~~~~-------~~~~~~~~~~~~  136 (162)
T cd04123          68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQ--RVVS-------KSEAEEYAKSVG  136 (162)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc--cCCC-------HHHHHHHHHHcC
Confidence            33457899999999985433322 2344455544332  3599999999998743  1110       112334444444


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ..++..+..  .+    .++.++++.+...+
T Consensus       137 ~~~~~~s~~--~~----~gi~~~~~~l~~~~  161 (162)
T cd04123         137 AKHFETSAK--TG----KGIEELFLSLAKRM  161 (162)
T ss_pred             CEEEEEeCC--CC----CCHHHHHHHHHHHh
Confidence            444444433  22    68999999886643

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.76  E-value=9e-17  Score=124.05  Aligned_cols=159  Identities=21%  Similarity=0.156  Sum_probs=91.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+|+++|++|+|||||++++++.... ..  ..+++......... .++  ..+.+|||||..+.           ...
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~-~~--~~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~-----------~~~   66 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFV-TD--YDPTIEDSYTKQCE-IDGQWAILDILDTAGQEEF-----------SAM   66 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-cc--cCCCccceEEEEEE-ECCEEEEEEEEECCCCcch-----------hHH
Confidence            469999999999999999999987642 11  11222211111122 333  36889999996432           112


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      .......+|++++|+|+++.-+... ..++..+.+... ....|+++|+||+|+....  ...       ......+.+.
T Consensus        67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~~~--~~~-------~~~~~~~~~~  136 (164)
T cd04145          67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQR--KVS-------REEGQELARK  136 (164)
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccccc--eec-------HHHHHHHHHH
Confidence            2233456799999999984433222 233334433221 1234999999999986431  110       1123334444


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      .+..  +|..++..+    .++.++++.+...+
T Consensus       137 ~~~~--~~~~Sa~~~----~~i~~l~~~l~~~~  163 (164)
T cd04145         137 LKIP--YIETSAKDR----LNVDKAFHDLVRVI  163 (164)
T ss_pred             cCCc--EEEeeCCCC----CCHHHHHHHHHHhh
Confidence            3333  344444333    78999998876543

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04149 Arf6 Arf6 subfamily

Probab=99.76  E-value=5.4e-17  Score=126.27  Aligned_cols=156  Identities=12%  Similarity=0.125  Sum_probs=91.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      +..+|+++|.+|||||||++++......  ..  . .|.......+. ..+..+.+|||||..           .+....
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~--~~--~-~t~g~~~~~~~-~~~~~~~l~Dt~G~~-----------~~~~~~   70 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSV--TT--I-PTVGFNVETVT-YKNVKFNVWDVGGQD-----------KIRPLW   70 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCc--cc--c-CCcccceEEEE-ECCEEEEEEECCCCH-----------HHHHHH
Confidence            3579999999999999999999865532  11  1 12222222222 456789999999953           222223


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCC-cccHHhhhCCCCCchHHHHHH
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDN-DETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~-~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ...+.++|++|||+|+++..+...  ...++.+.....  ...|+++|+||+|+.... ...+++++..         ..
T Consensus        71 ~~~~~~a~~ii~v~D~t~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~---------~~  139 (168)
T cd04149          71 RHYYTGTQGLIFVVDSADRDRIDE--ARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGL---------TR  139 (168)
T ss_pred             HHHhccCCEEEEEEeCCchhhHHH--HHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCC---------Cc
Confidence            345678899999999985432222  223333332211  235999999999976431 0112221110         00


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVN  205 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~  205 (259)
                      .....+.+|..++.++    .|+.+++..|.
T Consensus       140 ~~~~~~~~~~~SAk~g----~gv~~~~~~l~  166 (168)
T cd04149         140 IRDRNWYVQPSCATSG----DGLYEGLTWLS  166 (168)
T ss_pred             cCCCcEEEEEeeCCCC----CChHHHHHHHh
Confidence            0112345666666655    78999998774

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04110 Rab35 Rab35 subfamily

Probab=99.75  E-value=1.3e-16  Score=127.51  Aligned_cols=161  Identities=17%  Similarity=0.184  Sum_probs=95.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ..++|+++|++|||||||++++.+........  +..........+. ..+  ..+.||||||...           +..
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~l~D~~G~~~-----------~~~   70 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYI--TTIGVDFKIRTVE-INGERVKLQIWDTAGQER-----------FRT   70 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--ccccceeEEEEEE-ECCEEEEEEEEeCCCchh-----------HHH
Confidence            35899999999999999999999876421111  1111112112222 223  4688999999431           222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ........+|++++|+|++++-+... ..++..+....   ...|++||+||+|+....  ...       ......+..
T Consensus        71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~~~--~~~-------~~~~~~~~~  138 (199)
T cd04110          71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPERK--VVE-------TEDAYKFAG  138 (199)
T ss_pred             HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccccc--ccC-------HHHHHHHHH
Confidence            22334567899999999985433332 23444444322   234899999999987531  110       112333444


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..+..  +|..++..+    .++.++++.|...+..
T Consensus       139 ~~~~~--~~e~Sa~~~----~gi~~lf~~l~~~~~~  168 (199)
T cd04110         139 QMGIS--LFETSAKEN----INVEEMFNCITELVLR  168 (199)
T ss_pred             HcCCE--EEEEECCCC----cCHHHHHHHHHHHHHH
Confidence            44433  444444443    7899999988776643

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PLN03110 Rab GTPase; Provisional

Probab=99.75  E-value=1.5e-16  Score=128.76  Aligned_cols=162  Identities=14%  Similarity=0.102  Sum_probs=96.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|++|||||||++++++........  +..........+. .++  ..+.||||||..           .+..
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~--~t~g~~~~~~~v~-~~~~~~~l~l~Dt~G~~-----------~~~~   76 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESK--STIGVEFATRTLQ-VEGKTVKAQIWDTAGQE-----------RYRA   76 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeEEEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHH
Confidence            45799999999999999999999877522211  1111122222222 233  478999999942           2333


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .....+..++++|+|+|+++.-+... ..++..+......  ..|+++|+||+|+...  ..+.       ....+.+..
T Consensus        77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~--~~~~-------~~~~~~l~~  145 (216)
T PLN03110         77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADS--NIVIMMAGNKSDLNHL--RSVA-------EEDGQALAE  145 (216)
T ss_pred             HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCC--CCeEEEEEEChhcccc--cCCC-------HHHHHHHHH
Confidence            33445668899999999985433333 3445555543322  3499999999997643  1111       112334444


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..+..  ++..++..+    .++.++++.+...+.+
T Consensus       146 ~~~~~--~~e~SA~~g----~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        146 KEGLS--FLETSALEA----TNVEKAFQTILLEIYH  175 (216)
T ss_pred             HcCCE--EEEEeCCCC----CCHHHHHHHHHHHHHH
Confidence            43333  444444443    6788888888666544

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.75  E-value=1.8e-16  Score=148.46  Aligned_cols=164  Identities=15%  Similarity=0.141  Sum_probs=107.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh--HHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS--EFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~--~~~~~~~~~~   96 (259)
                      ..+|+++|.+|||||||+|+|+|.... . ...+++|.......+. .++..+.+|||||.++.....  ....+.+...
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-v-gn~pGvTve~k~g~~~-~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQR-V-GNWAGVTVERKEGQFS-TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCc-c-CCCCCceEeeEEEEEE-cCceEEEEEECCCccccccccccccHHHHHHHH
Confidence            368999999999999999999998752 2 2356777766665554 567799999999998643211  1112222221


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                       ......+|++++|+|+++ +.. ...+...+.+ .+    .|+++|+||+|..+.  ...        ....+.+.+..
T Consensus        80 -~l~~~~aD~vI~VvDat~-ler-~l~l~~ql~e-~g----iPvIvVlNK~Dl~~~--~~i--------~id~~~L~~~L  141 (772)
T PRK09554         80 -YILSGDADLLINVVDASN-LER-NLYLTLQLLE-LG----IPCIVALNMLDIAEK--QNI--------RIDIDALSARL  141 (772)
T ss_pred             -HHhccCCCEEEEEecCCc-chh-hHHHHHHHHH-cC----CCEEEEEEchhhhhc--cCc--------HHHHHHHHHHh
Confidence             112357899999999984 332 2334444444 33    499999999998744  111        22344555666


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      +.+++.++....      +|+.+|++.+.+...
T Consensus       142 G~pVvpiSA~~g------~GIdeL~~~I~~~~~  168 (772)
T PRK09554        142 GCPVIPLVSTRG------RGIEALKLAIDRHQA  168 (772)
T ss_pred             CCCEEEEEeecC------CCHHHHHHHHHHhhh
Confidence            666655555432      689999999888764

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.75  E-value=1.1e-16  Score=123.66  Aligned_cols=159  Identities=17%  Similarity=0.110  Sum_probs=91.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|++|||||||+|++++..... ..  .+++......... .++  ..+.+|||||.....           ...
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~-~~--~~t~~~~~~~~~~-~~~~~~~l~i~Dt~g~~~~~-----------~~~   65 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVD-DY--DPTIEDSYRKQIE-IDGEVCLLDILDTAGQEEFS-----------AMR   65 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCc-cc--CCchhhhEEEEEE-ECCEEEEEEEEECCCcccch-----------HHH
Confidence            379999999999999999999876422 11  1222211111122 233  468899999965321           111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ......+|++++|+|++++-+... ..+...+.+... ....|+++|+||+|+.......         ......+.+..
T Consensus        66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pii~v~nK~Dl~~~~~~~---------~~~~~~~~~~~  135 (164)
T smart00173       66 DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKD-RDDVPIVLVGNKCDLESERVVS---------TEEGKELARQW  135 (164)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceEc---------HHHHHHHHHHc
Confidence            223446699999999984433222 233344443322 1235999999999986531111         11233444444


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      +..+  |..++..+    .++.++++.+.+.+.
T Consensus       136 ~~~~--~~~Sa~~~----~~i~~l~~~l~~~~~  162 (164)
T smart00173      136 GCPF--LETSAKER----VNVDEAFYDLVREIR  162 (164)
T ss_pred             CCEE--EEeecCCC----CCHHHHHHHHHHHHh
Confidence            4333  44444333    789999998876554

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.75  E-value=1.3e-16  Score=125.59  Aligned_cols=159  Identities=12%  Similarity=0.067  Sum_probs=96.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+|+++|.+|||||||++++....... .    ..|.......+. ..+..+.+|||||..           .+...
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~----~pt~g~~~~~~~-~~~~~~~i~D~~Gq~-----------~~~~~   77 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-T----IPTIGFNVETVE-YKNISFTVWDVGGQD-----------KIRPL   77 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCcc-c----cCCcceeEEEEE-ECCEEEEEEECCCCH-----------HHHHH
Confidence            455899999999999999999998655321 1    122222232333 456789999999942           22333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ....+.++|++|||+|+++..+..+  ....+...+...  ...|++||+||+|+...  ...+++         ...+.
T Consensus        78 ~~~~~~~a~~iI~V~D~s~~~s~~~--~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~---------~~~l~  144 (181)
T PLN00223         78 WRHYFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEI---------TDKLG  144 (181)
T ss_pred             HHHHhccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHH---------HHHhC
Confidence            3445678899999999984432221  233333333211  13599999999997644  222211         11111


Q ss_pred             H--cCC-cEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          175 L--CEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       175 ~--~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .  ... .++++..++.++    +|+.+++++|.+.+.
T Consensus       145 l~~~~~~~~~~~~~Sa~~g----~gv~e~~~~l~~~~~  178 (181)
T PLN00223        145 LHSLRQRHWYIQSTCATSG----EGLYEGLDWLSNNIA  178 (181)
T ss_pred             ccccCCCceEEEeccCCCC----CCHHHHHHHHHHHHh
Confidence            1  111 234556666555    799999999877654

>cd01889 SelB_euk SelB subfamily

Probab=99.75  E-value=2.8e-17  Score=130.63  Aligned_cols=167  Identities=17%  Similarity=0.240  Sum_probs=95.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC---cccc--cCCCCCcceeeEEEEEEee-------------CCcEEEEEeCCCCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRR---AFKS--KAGSSGVTKTCEMQRTMLK-------------DGQVVNVIDTPGLFD   81 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~---~~~~--~~~~~~~T~~~~~~~~~~~-------------~~~~~~liDTPG~~~   81 (259)
                      .+|+++|++|+|||||+++|++..   .+..  .....+.|.........+.             .+..+.+|||||.. 
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-   79 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-   79 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence            379999999999999999998731   0000  0111234444443333321             25689999999963 


Q ss_pred             CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh
Q 024985           82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~  161 (259)
                                .+...+......+|++++|+|+..+.+..+.+.+.... ..+    .|+++|+||+|+...  ...+...
T Consensus        80 ----------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~-~~~----~~~iiv~NK~Dl~~~--~~~~~~~  142 (192)
T cd01889          80 ----------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGE-ILC----KKLIVVLNKIDLIPE--EERERKI  142 (192)
T ss_pred             ----------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHH-HcC----CCEEEEEECcccCCH--HHHHHHH
Confidence                      12222223345669999999998666666554444332 233    399999999998754  2222211


Q ss_pred             CCCCCchHHHHHHHcCC-cEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          162 GPECPKPLKEILQLCEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       162 ~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .. ..+.+...+...+. .+.++..++..+    .|+.+|++.+...+.
T Consensus       143 ~~-~~~~l~~~~~~~~~~~~~vi~iSa~~g----~gi~~L~~~l~~~~~  186 (192)
T cd01889         143 EK-MKKKLQKTLEKTRFKNSPIIPVSAKPG----GGEAELGKDLNNLIV  186 (192)
T ss_pred             HH-HHHHHHHHHHhcCcCCCCEEEEeccCC----CCHHHHHHHHHhccc
Confidence            10 01112222221111 222333343333    789999999887654

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04136 Rap_like Rap-like subfamily

Probab=99.75  E-value=1e-16  Score=123.67  Aligned_cols=157  Identities=13%  Similarity=0.118  Sum_probs=91.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|.+|||||||++++.+...... .  .+++.......+. .++  ..+.+|||||....           ....
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-~--~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~-----------~~~~   66 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEK-Y--DPTIEDSYRKQIE-VDGQQCMLEILDTAGTEQF-----------TAMR   66 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcc-c--CCchhhhEEEEEE-ECCEEEEEEEEECCCcccc-----------chHH
Confidence            6899999999999999999997664211 1  1222111111122 333  36778999996432           1122


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+.++|++++|+|+++.-+... ..+++.+.+... ....|+++|+||+|+....  ...       ......+.+..
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~--~~~-------~~~~~~~~~~~  136 (163)
T cd04136          67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLEDER--VVS-------REEGQALARQW  136 (163)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccc--eec-------HHHHHHHHHHc
Confidence            234567899999999985433332 334445544322 1235999999999986431  110       11223344444


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      +..  ++..++..+    .++.+++..+.+.
T Consensus       137 ~~~--~~~~Sa~~~----~~v~~l~~~l~~~  161 (163)
T cd04136         137 GCP--FYETSAKSK----INVDEVFADLVRQ  161 (163)
T ss_pred             CCe--EEEecCCCC----CCHHHHHHHHHHh
Confidence            433  444444433    7899999887654

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04125 RabA_like RabA-like subfamily

Probab=99.75  E-value=1.3e-16  Score=126.42  Aligned_cols=160  Identities=16%  Similarity=0.153  Sum_probs=93.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|++|||||||+|++++........  +..+.......+. .++  ..+.+|||||..           .+....
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~i~Dt~g~~-----------~~~~~~   66 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTK--STIGVDFKIKTVY-IENKIIKLQIWDTNGQE-----------RFRSLN   66 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeEEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHhhH
Confidence            479999999999999999999877522111  1111222222222 233  367899999943           222223


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+.++|++++|+|++++-+... ..++..+......  ..|+++|+||+|+.+..  .+.       ....+.+....
T Consensus        67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~--~~~~ivv~nK~Dl~~~~--~v~-------~~~~~~~~~~~  135 (188)
T cd04125          67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARE--NVIKVIVANKSDLVNNK--VVD-------SNIAKSFCDSL  135 (188)
T ss_pred             HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCCCcccc--cCC-------HHHHHHHHHHc
Confidence            345668899999999985433322 2344444443222  24899999999987441  111       11222333333


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +..++..++  ..+    .++.+++..+...+..
T Consensus       136 ~~~~~evSa--~~~----~~i~~~f~~l~~~~~~  163 (188)
T cd04125         136 NIPFFETSA--KQS----INVEEAFILLVKLIIK  163 (188)
T ss_pred             CCeEEEEeC--CCC----CCHHHHHHHHHHHHHH
Confidence            333433333  333    6899998887766543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.75  E-value=1.1e-16  Score=125.37  Aligned_cols=159  Identities=11%  Similarity=0.087  Sum_probs=92.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ...+|+++|.+|||||||++.+...... .   .. .|......... ..+..+.+|||||...           +....
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~---~~-~t~~~~~~~~~-~~~~~l~l~D~~G~~~-----------~~~~~   74 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-T---TI-PTIGFNVETVT-YKNISFTVWDVGGQDK-----------IRPLW   74 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-C---cC-CccccceEEEE-ECCEEEEEEECCCChh-----------hHHHH
Confidence            3589999999999999999999654431 1   11 22223233333 4567899999999532           22233


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ...+.++|++|||+|++++.+..  ...+++...+...  ...|++||+||+|+...  ...+++...     + . ...
T Consensus        75 ~~~~~~ad~ii~v~D~t~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~-~-~~~  143 (175)
T smart00177       75 RHYYTNTQGLIFVVDSNDRDRID--EAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEK-----L-G-LHS  143 (175)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHH-----h-C-ccc
Confidence            34467889999999998442221  1222333322211  12499999999997643  111111110     0 0 011


Q ss_pred             cCC-cEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          176 CEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       176 ~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      +.. .++++..++..+    .|+.+++++|.+.+
T Consensus       144 ~~~~~~~~~~~Sa~~g----~gv~e~~~~l~~~~  173 (175)
T smart00177      144 IRDRNWYIQPTCATSG----DGLYEGLTWLSNNL  173 (175)
T ss_pred             cCCCcEEEEEeeCCCC----CCHHHHHHHHHHHh
Confidence            112 233555555544    79999999987654

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04144 Ras2 Ras2 subfamily

Probab=99.75  E-value=7.1e-17  Score=128.10  Aligned_cols=161  Identities=14%  Similarity=0.146  Sum_probs=94.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      +|+++|.+|||||||++++++..... ..  .+++......... .++.  .+.+|||||...           +.....
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~-~~--~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~~~~   65 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVE-TY--DPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE-----------YTALRD   65 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCc-cC--CCchHhhEEEEEE-ECCEEEEEEEEECCCchh-----------hHHHHH
Confidence            48999999999999999998765411 11  1111111111122 3343  588999999532           122222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc-cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK-KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ..+.++|++|+|+|+++..+... ..++..+...... ....|+++|+||+|+...  ..+.       ......+....
T Consensus        66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~--~~v~-------~~~~~~~~~~~  136 (190)
T cd04144          66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE--REVS-------TEEGAALARRL  136 (190)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc--CccC-------HHHHHHHHHHh
Confidence            34567799999999985443332 3455555543321 133599999999998643  1111       11223344444


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      +..  +|..++..+    .++.+++..+.+.+...
T Consensus       137 ~~~--~~e~SAk~~----~~v~~l~~~l~~~l~~~  165 (190)
T cd04144         137 GCE--FIEASAKTN----VNVERAFYTLVRALRQQ  165 (190)
T ss_pred             CCE--EEEecCCCC----CCHHHHHHHHHHHHHHh
Confidence            443  445554444    78999999988766544

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PLN03118 Rab family protein; Provisional

Probab=99.75  E-value=1.3e-16  Score=128.60  Aligned_cols=164  Identities=13%  Similarity=0.135  Sum_probs=95.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+++|++|||||||++++++...  .... +..+.......+. .++  ..+.||||||...           +.
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~--~~~~-~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~-----------~~   76 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFISSSV--EDLA-PTIGVDFKIKQLT-VGGKRLKLTIWDTAGQER-----------FR   76 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCC--CCcC-CCceeEEEEEEEE-ECCEEEEEEEEECCCchh-----------hH
Confidence            3458999999999999999999998764  2221 1111122222222 233  4789999999542           12


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhHH-H-HHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEGG-A-AIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI  172 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~-~-~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (259)
                      ......+..+|++|+|+|++++-+.... . +...+.. +......|+++|+||+|+....  ...       ......+
T Consensus        77 ~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~Dl~~~~--~i~-------~~~~~~~  146 (211)
T PLN03118         77 TLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVEL-YSTNQDCVKMLVGNKVDRESER--DVS-------REEGMAL  146 (211)
T ss_pred             HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECccccccC--ccC-------HHHHHHH
Confidence            2223345677999999999854333332 1 2222222 2222234899999999986441  110       1122233


Q ss_pred             HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      ....+.  .+|..++...    .++.++++.+...+.+.
T Consensus       147 ~~~~~~--~~~e~SAk~~----~~v~~l~~~l~~~~~~~  179 (211)
T PLN03118        147 AKEHGC--LFLECSAKTR----ENVEQCFEELALKIMEV  179 (211)
T ss_pred             HHHcCC--EEEEEeCCCC----CCHHHHHHHHHHHHHhh
Confidence            333333  3444444433    78999999998877553

>cd04175 Rap1 Rap1 subgroup

Probab=99.75  E-value=1.2e-16  Score=123.64  Aligned_cols=158  Identities=15%  Similarity=0.127  Sum_probs=91.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|.+|||||||+++++.... ...  ..+++.......+. .++  ..+.+|||||...           +....
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~--~~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~~~   66 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIF-VEK--YDPTIEDSYRKQVE-VDGQQCMLEILDTAGTEQ-----------FTAMR   66 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCC-Ccc--cCCcchheEEEEEE-ECCEEEEEEEEECCCccc-----------chhHH
Confidence            6899999999999999999986543 111  11222211111222 333  3677999999642           22222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+.++|++++|+|.++.-+... ..++..+.+... ....|+++|+||+|+....  ...       ......+.+..
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~--~~~-------~~~~~~~~~~~  136 (164)
T cd04175          67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDER--VVG-------KEQGQNLARQW  136 (164)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhcc--EEc-------HHHHHHHHHHh
Confidence            234556799999999874433322 334444443221 2235999999999986531  110       11233444444


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      +..  ++..++..+    .++.+++..+.+.+
T Consensus       137 ~~~--~~~~Sa~~~----~~v~~~~~~l~~~l  162 (164)
T cd04175         137 GCA--FLETSAKAK----INVNEIFYDLVRQI  162 (164)
T ss_pred             CCE--EEEeeCCCC----CCHHHHHHHHHHHh
Confidence            443  344444333    78999999887654

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04121 Rab40 Rab40 subfamily

Probab=99.74  E-value=3e-16  Score=124.23  Aligned_cols=164  Identities=15%  Similarity=0.153  Sum_probs=101.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|..|||||||+.++.+... .... .+..+.......+. .++  ..+.+|||||..           .+..
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~-~~~~-~~t~~~~~~~~~i~-~~~~~~~l~iwDt~G~~-----------~~~~   70 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGST-ESPY-GYNMGIDYKTTTIL-LDGRRVKLQLWDTSGQG-----------RFCT   70 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCC-CCcceeEEEEEEEE-ECCEEEEEEEEeCCCcH-----------HHHH
Confidence            457999999999999999999987653 1111 11112222222222 334  478899999953           2333


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .....+.++|++|+|+|++++.+... ..+++.+.... .  ..|++||.||.|+....  .+       .....+.+.+
T Consensus        71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~--~~piilVGNK~DL~~~~--~v-------~~~~~~~~a~  138 (189)
T cd04121          71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-P--GVPKILVGNRLHLAFKR--QV-------ATEQAQAYAE  138 (189)
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccchhcc--CC-------CHHHHHHHHH
Confidence            33445678899999999986554443 34556665432 2  35999999999986431  11       1123445555


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG  213 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~  213 (259)
                      ..+..  +|..++..+    .++.++++.+...+....+
T Consensus       139 ~~~~~--~~e~SAk~g----~~V~~~F~~l~~~i~~~~~  171 (189)
T cd04121         139 RNGMT--FFEVSPLCN----FNITESFTELARIVLMRHG  171 (189)
T ss_pred             HcCCE--EEEecCCCC----CCHHHHHHHHHHHHHHhcC
Confidence            54444  444454443    7899999988876654433

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd01893 Miro1 Miro1 subfamily

Probab=99.74  E-value=1.4e-16  Score=123.69  Aligned_cols=160  Identities=14%  Similarity=0.162  Sum_probs=91.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      +|+++|.+|||||||+|++.+...... .  +...............+..+.+|||||.....       ...    ...
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~----~~~   67 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-V--PRVLPEITIPADVTPERVPTTIVDTSSRPQDR-------ANL----AAE   67 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCcc-C--CCcccceEeeeeecCCeEEEEEEeCCCchhhh-------HHH----hhh
Confidence            799999999999999999998764221 1  11111111111111234578999999965321       111    222


Q ss_pred             CCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985          101 KDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN  178 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (259)
                      +..+|++++|+|++++.+...  ..++..+... ..  ..|+++|+||+|+.+.  ......     ...+..+......
T Consensus        68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~-~~--~~pviiv~nK~Dl~~~--~~~~~~-----~~~~~~~~~~~~~  137 (166)
T cd01893          68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRL-GV--KVPIILVGNKSDLRDG--SSQAGL-----EEEMLPIMNEFRE  137 (166)
T ss_pred             cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CC--CCCEEEEEEchhcccc--cchhHH-----HHHHHHHHHHHhc
Confidence            467899999999985544433  2355555543 22  3599999999998754  111000     0122223332222


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ...++..++..+    .++.+++..+.+.+
T Consensus       138 ~~~~~e~Sa~~~----~~v~~lf~~~~~~~  163 (166)
T cd01893         138 IETCVECSAKTL----INVSEVFYYAQKAV  163 (166)
T ss_pred             ccEEEEeccccc----cCHHHHHHHHHHHh
Confidence            112444444433    78999999887754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.74  E-value=5.2e-17  Score=125.86  Aligned_cols=159  Identities=15%  Similarity=0.155  Sum_probs=90.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcC
Q 024985           22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAK  101 (259)
Q Consensus        22 I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~  101 (259)
                      |+++|.+|||||||++++.+........    .|.......+. ..+..+.+|||||....           .......+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~----pt~g~~~~~i~-~~~~~l~i~Dt~G~~~~-----------~~~~~~~~   65 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVV----PTTGFNSVAIP-TQDAIMELLEIGGSQNL-----------RKYWKRYL   65 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCccccc----ccCCcceEEEe-eCCeEEEEEECCCCcch-----------hHHHHHHH
Confidence            7899999999999999999875422111    12111222222 45678999999995421           11222345


Q ss_pred             CCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEE
Q 024985          102 DGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRV  181 (259)
Q Consensus       102 ~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  181 (259)
                      .++|++|||+|++++.+...  ...++.+........|+++|+||+|+...  ....++...   ..+..+....+  +.
T Consensus        66 ~~ad~ii~V~D~t~~~s~~~--~~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~---~~~~~~~~~~~--~~  136 (164)
T cd04162          66 SGSQGLIFVVDSADSERLPL--ARQELHQLLQHPPDLPLVVLANKQDLPAA--RSVQEIHKE---LELEPIARGRR--WI  136 (164)
T ss_pred             hhCCEEEEEEECCCHHHHHH--HHHHHHHHHhCCCCCcEEEEEeCcCCcCC--CCHHHHHHH---hCChhhcCCCc--eE
Confidence            67799999999984432221  12233333222234599999999998654  233322110   01222333323  33


Q ss_pred             EEeCCCc--ccccchhHHHHHHHHHH
Q 024985          182 LFDNKTK--DAATRTEQVGKLISLVN  205 (259)
Q Consensus       182 ~~~~~~~--~~~~~~~~i~eLl~~i~  205 (259)
                      +|..++.  .++...+++.++++.+.
T Consensus       137 ~~~~Sa~~~~s~~~~~~v~~~~~~~~  162 (164)
T cd04162         137 LQGTSLDDDGSPSRMEAVKDLLSQLI  162 (164)
T ss_pred             EEEeeecCCCChhHHHHHHHHHHHHh
Confidence            4444433  34455689999888654

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.74  E-value=2.6e-16  Score=122.91  Aligned_cols=160  Identities=13%  Similarity=0.103  Sum_probs=96.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ..+|+++|.+|||||||++.+.+.......    ..|....+. .+. .++  ..+.+|||||..           .+..
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~----~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~-----------~~~~   65 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYH----DPTIEDAYKQQAR-IDNEPALLDILDTAGQA-----------EFTA   65 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCc----CCcccceEEEEEE-ECCEEEEEEEEeCCCch-----------hhHH
Confidence            368999999999999999999877642211    112111111 122 334  368899999953           2223


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGG-AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .....+..+|++++|+|++++.+.... .+...+.+... ....|+++|+||+|+...  ..+.       ......+.+
T Consensus        66 l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~--~~v~-------~~~~~~~a~  135 (172)
T cd04141          66 MRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ--RQVT-------TEEGRNLAR  135 (172)
T ss_pred             HhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc--CccC-------HHHHHHHHH
Confidence            333455678999999999866655542 34455554321 223599999999997643  1111       112233444


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..+..  +|..++..+    .++.+++..+...+.+
T Consensus       136 ~~~~~--~~e~Sa~~~----~~v~~~f~~l~~~~~~  165 (172)
T cd04141         136 EFNCP--FFETSAALR----HYIDDAFHGLVREIRR  165 (172)
T ss_pred             HhCCE--EEEEecCCC----CCHHHHHHHHHHHHHH
Confidence            44433  444444443    6899999988765543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01862 Rab7 Rab7 subfamily

Probab=99.74  E-value=2.6e-16  Score=122.39  Aligned_cols=162  Identities=15%  Similarity=0.073  Sum_probs=92.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|++|||||||+|++++........  ...+.+.....+. ..+  ..+.+|||||...           +....
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~~~D~~g~~~-----------~~~~~   66 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK--ATIGADFLTKEVT-VDDKLVTLQIWDTAGQER-----------FQSLG   66 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcC--CccceEEEEEEEE-ECCEEEEEEEEeCCChHH-----------HHhHH
Confidence            379999999999999999999876422211  1112122222222 233  3577999999431           22222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .....++|++|+|+|++++.+... ..+...+......  ....|+++|+||+|+..+.....         ...+.+.+
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---------~~~~~~~~  137 (172)
T cd01862          67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVST---------KKAQQWCQ  137 (172)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCH---------HHHHHHHH
Confidence            334567899999999974433222 1233333222221  11359999999999874311111         12334444


Q ss_pred             HcC-CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 LCE-NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~~~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..+ ..++..++..  +    .|+.++++.+.+.+.+
T Consensus       138 ~~~~~~~~~~Sa~~--~----~gv~~l~~~i~~~~~~  168 (172)
T cd01862         138 SNGNIPYFETSAKE--A----INVEQAFETIARKALE  168 (172)
T ss_pred             HcCCceEEEEECCC--C----CCHHHHHHHHHHHHHh
Confidence            444 2333333332  2    6899999988776544

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.74  E-value=4.5e-16  Score=119.95  Aligned_cols=155  Identities=19%  Similarity=0.127  Sum_probs=90.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe---eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML---KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~---~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      +|+++|.+|+|||||+|++++..... .. .+..........+..   .....+.+|||||..           .+....
T Consensus         2 kv~~vG~~~~GKTsl~~~~~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~~~   68 (162)
T cd04106           2 KVIVVGNGNVGKSSMIQRFVKGIFTK-DY-KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE-----------EFDAIT   68 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC-CC-CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH-----------HHHHhH
Confidence            79999999999999999999876422 11 111112221112221   123479999999932           222333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+..+|++++|+|++++-+... ..++..+....   ...|+++|+||+|+....  .+.       ......+.+..
T Consensus        69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~--~v~-------~~~~~~~~~~~  136 (162)
T cd04106          69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLDQA--VIT-------NEEAEALAKRL  136 (162)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhccccc--CCC-------HHHHHHHHHHc
Confidence            345668899999999984433222 23333333322   234999999999987541  110       11234455555


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      +.+++..++.  .+    .++.++++.|..
T Consensus       137 ~~~~~~~Sa~--~~----~~v~~l~~~l~~  160 (162)
T cd04106         137 QLPLFRTSVK--DD----FNVTELFEYLAE  160 (162)
T ss_pred             CCeEEEEECC--CC----CCHHHHHHHHHH
Confidence            5544444433  22    689999888754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>COG2262 HflX GTPases [General function prediction only]

Probab=99.74  E-value=1.9e-16  Score=134.31  Aligned_cols=169  Identities=22%  Similarity=0.180  Sum_probs=114.7

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ..+.+.|+++|.+|+|||||+|+|++...+...  ....|-++....+...++..+.+-||.||...-  +..+...|..
T Consensus       189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d--~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~L--P~~LV~AFks  264 (411)
T COG2262         189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVAD--QLFATLDPTTRRIELGDGRKVLLTDTVGFIRDL--PHPLVEAFKS  264 (411)
T ss_pred             ccCCCeEEEEeeccccHHHHHHHHhccCeeccc--cccccccCceeEEEeCCCceEEEecCccCcccC--ChHHHHHHHH
Confidence            346789999999999999999999998875433  344555555555555668899999999998642  3445556665


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .+.. ...+|++|+|+|++++.... -....+.|.++ |.. ..|+++|+||+|++.+  ..           .+..+..
T Consensus       265 TLEE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~~-~~p~i~v~NKiD~~~~--~~-----------~~~~~~~  328 (411)
T COG2262         265 TLEE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEI-GAD-EIPIILVLNKIDLLED--EE-----------ILAELER  328 (411)
T ss_pred             HHHH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CCC-CCCEEEEEecccccCc--hh-----------hhhhhhh
Confidence            5543 35789999999998552222 23445555553 222 2599999999999876  21           1122222


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      ..+ ..++++....      .|+..|++.|.+.+...
T Consensus       329 ~~~-~~v~iSA~~~------~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         329 GSP-NPVFISAKTG------EGLDLLRERIIELLSGL  358 (411)
T ss_pred             cCC-CeEEEEeccC------cCHHHHHHHHHHHhhhc
Confidence            222 3455555432      68999999999988854

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.74  E-value=1.5e-16  Score=125.38  Aligned_cols=162  Identities=11%  Similarity=0.068  Sum_probs=95.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+|+++|++|||||||++++......  ..  . .|.......+. ..+..+.+|||||..           .+...
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~--~~--~-~T~~~~~~~~~-~~~~~~~l~D~~G~~-----------~~~~~   77 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVV--TT--I-PTIGFNVETVE-YKNLKFTMWDVGGQD-----------KLRPL   77 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cc--C-CccccceEEEE-ECCEEEEEEECCCCH-----------hHHHH
Confidence            34589999999999999999999755432  11  1 12222233333 456789999999953           22223


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ...++.++|++|||+|+++.-+..+  ..+.+.+.+...  ...|++||+||.|+...  ...+++...     +.  ..
T Consensus        78 ~~~~~~~ad~iI~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----l~--~~  146 (182)
T PTZ00133         78 WRHYYQNTNGLIFVVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEK-----LG--LH  146 (182)
T ss_pred             HHHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHH-----hC--CC
Confidence            3445678899999999984322211  222333332221  23599999999997543  112211110     00  01


Q ss_pred             HcCC-cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 LCEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .+.. .++++..++.++    .|+.++++.|.+.+..
T Consensus       147 ~~~~~~~~~~~~Sa~tg----~gv~e~~~~l~~~i~~  179 (182)
T PTZ00133        147 SVRQRNWYIQGCCATTA----QGLYEGLDWLSANIKK  179 (182)
T ss_pred             cccCCcEEEEeeeCCCC----CCHHHHHHHHHHHHHH
Confidence            1222 234556665554    7999999998876654

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.74  E-value=3.9e-16  Score=121.58  Aligned_cols=163  Identities=15%  Similarity=0.090  Sum_probs=92.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH-H
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV-K   95 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~-~   95 (259)
                      ..+|+++|++|+|||||++++++.......  .+..........+. .++  ..+.+|||||...           +. .
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~~~   67 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERT--EATIGVDFRERTVE-IDGERIKVQLWDTAGQER-----------FRKS   67 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCcc--ccceeEEEEEEEEE-ECCeEEEEEEEeCCChHH-----------HHHh
Confidence            368999999999999999999876642211  11111111112222 233  4789999999431           11 1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ........+|++++|+|++++-+... ..++..+.... .....|+++|+||+|+...  ..+.       ......+.+
T Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~--~~~~-------~~~~~~~~~  137 (170)
T cd04115          68 MVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHS-LPNEVPRILVGNKCDLREQ--IQVP-------TDLAQRFAD  137 (170)
T ss_pred             hHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc-CCCCCCEEEEEECccchhh--cCCC-------HHHHHHHHH
Confidence            22344568899999999985544433 23444444322 1223599999999997644  1110       112233444


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      .....++..++...   ....++.+++..+...+
T Consensus       138 ~~~~~~~e~Sa~~~---~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         138 AHSMPLFETSAKDP---SENDHVEAIFMTLAHKL  168 (170)
T ss_pred             HcCCcEEEEeccCC---cCCCCHHHHHHHHHHHh
Confidence            44334444443321   11367888887765543

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04118 Rab24 Rab24 subfamily

Probab=99.74  E-value=1.7e-16  Score=126.06  Aligned_cols=162  Identities=14%  Similarity=0.181  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEE--EEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM--QRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~--~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      .+|+++|.+|+|||||++++++.......   ...|....+  ..+. .++.  .+.+|||||...           +..
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~l~i~D~~G~~~-----------~~~   65 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGP---YQNTIGAAFVAKRMV-VGERVVTLGIWDTAGSER-----------YEA   65 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcC---cccceeeEEEEEEEE-ECCEEEEEEEEECCCchh-----------hhh
Confidence            37999999999999999999987642211   112222111  1122 3333  567999999532           112


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .....+.++|++++|+|+++.-+... ..+++.+... .  ...|+++|+||+|+.... .....    .....+..+..
T Consensus        66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~--~~~piilv~nK~Dl~~~~-~~~~~----v~~~~~~~~~~  137 (193)
T cd04118          66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL-E--EHCKIYLCGTKSDLIEQD-RSLRQ----VDFHDVQDFAD  137 (193)
T ss_pred             hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-C--CCCCEEEEEEcccccccc-cccCc----cCHHHHHHHHH
Confidence            22334567899999999984433222 3345555442 1  235999999999976431 01110    00112334444


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..+..++  ..++..+    .++.+|++.+.+.+..
T Consensus       138 ~~~~~~~--~~Sa~~~----~gv~~l~~~i~~~~~~  167 (193)
T cd04118         138 EIKAQHF--ETSSKTG----QNVDELFQKVAEDFVS  167 (193)
T ss_pred             HcCCeEE--EEeCCCC----CCHHHHHHHHHHHHHH
Confidence            4444433  3333332    7899999998876643

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd00879 Sar1 Sar1 subfamily

Probab=99.73  E-value=1.5e-16  Score=126.11  Aligned_cols=170  Identities=11%  Similarity=0.022  Sum_probs=94.9

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ......+|+++|++|||||||++++.+.....  .   ..|.......+. .++..+.+|||||...           +.
T Consensus        15 ~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~--~---~~T~~~~~~~i~-~~~~~~~l~D~~G~~~-----------~~   77 (190)
T cd00879          15 LYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQ--H---VPTLHPTSEELT-IGNIKFKTFDLGGHEQ-----------AR   77 (190)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHhcCCCcc--c---CCccCcceEEEE-ECCEEEEEEECCCCHH-----------HH
Confidence            34456899999999999999999999876421  1   112222223333 4567899999999431           11


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCC-cccHHhhhCCCCCchH--
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDN-DETLEDYLGPECPKPL--  169 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~-~~~~~~~~~~~~~~~l--  169 (259)
                      ........++|++++|+|+++.-+..  ....++...+..  ....|+++|+||+|+.... ...+++++........  
T Consensus        78 ~~~~~~~~~ad~iilV~D~~~~~s~~--~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  155 (190)
T cd00879          78 RLWKDYFPEVDGIVFLVDAADPERFQ--ESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKG  155 (190)
T ss_pred             HHHHHHhccCCEEEEEEECCcHHHHH--HHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccc
Confidence            22223456779999999997432111  122233332221  1235999999999986431 1222222221000000  


Q ss_pred             HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      -.+.........+|..++..+    +|+.++++.+.+.
T Consensus       156 ~~~~~~~~~~~~~~~~Sa~~~----~gv~e~~~~l~~~  189 (190)
T cd00879         156 VSLKVSGIRPIEVFMCSVVKR----QGYGEAFRWLSQY  189 (190)
T ss_pred             ccccccCceeEEEEEeEecCC----CChHHHHHHHHhh
Confidence            000011112233556565544    7999999998764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.73  E-value=3.1e-17  Score=126.29  Aligned_cols=145  Identities=18%  Similarity=0.258  Sum_probs=87.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      .+|+++|++|+|||||+|+|.|.....      ..|..+.+      ...  .+|||||.+....   .....+    ..
T Consensus         2 ~~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~~v~~------~~~--~~iDtpG~~~~~~---~~~~~~----~~   60 (158)
T PRK15467          2 KRIAFVGAVGAGKTTLFNALQGNYTLA------RKTQAVEF------NDK--GDIDTPGEYFSHP---RWYHAL----IT   60 (158)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCccC------ccceEEEE------CCC--CcccCCccccCCH---HHHHHH----HH
Confidence            379999999999999999999765311      12222211      111  2699999864321   122222    23


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN-  178 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  178 (259)
                      ...++|++++|+|++...+.....    +... +.  ..|+++++||+|+...   ..+         .+.+.+...+. 
T Consensus        61 ~~~~ad~il~v~d~~~~~s~~~~~----~~~~-~~--~~~ii~v~nK~Dl~~~---~~~---------~~~~~~~~~~~~  121 (158)
T PRK15467         61 TLQDVDMLIYVHGANDPESRLPAG----LLDI-GV--SKRQIAVISKTDMPDA---DVA---------ATRKLLLETGFE  121 (158)
T ss_pred             HHhcCCEEEEEEeCCCcccccCHH----HHhc-cC--CCCeEEEEEccccCcc---cHH---------HHHHHHHHcCCC
Confidence            356789999999998554333222    2221 11  2489999999997532   111         23344444443 


Q ss_pred             -cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          179 -RRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       179 -~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                       +++.+++.  ++    +++.+|++.+.+.+.+
T Consensus       122 ~p~~~~Sa~--~g----~gi~~l~~~l~~~~~~  148 (158)
T PRK15467        122 EPIFELNSH--DP----QSVQQLVDYLASLTKQ  148 (158)
T ss_pred             CCEEEEECC--Cc----cCHHHHHHHHHHhchh
Confidence             34444443  32    7999999999888744

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.73  E-value=2.9e-16  Score=127.27  Aligned_cols=162  Identities=13%  Similarity=0.025  Sum_probs=96.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ....+|+++|.+|||||||+++++..........+.+.+...  ..+.. .....+.+|||||...           +..
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~--~~~~~~~~~~~l~i~Dt~G~~~-----------~~~   77 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEK-----------FGG   77 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEE--EEEEECCeEEEEEEEECCCchh-----------hhh
Confidence            566899999999999999999987665321111112222111  11111 1235899999999542           222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .....+..+|++|+|+|++++.+... ..+++.+....   ...|+++|+||+|+...  ...        ...+ .+..
T Consensus        78 ~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~--~v~--------~~~~-~~~~  143 (219)
T PLN03071         78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR--QVK--------AKQV-TFHR  143 (219)
T ss_pred             hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhhc--cCC--------HHHH-HHHH
Confidence            22334668899999999986544433 34455554432   23499999999997532  100        1112 2222


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      ..+  ..+|..++..+    .++.+++..+.+.+.+.
T Consensus       144 ~~~--~~~~e~SAk~~----~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        144 KKN--LQYYEISAKSN----YNFEKPFLYLARKLAGD  174 (219)
T ss_pred             hcC--CEEEEcCCCCC----CCHHHHHHHHHHHHHcC
Confidence            222  33556665554    78999999887766543

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.73  E-value=5.4e-17  Score=122.58  Aligned_cols=139  Identities=18%  Similarity=0.245  Sum_probs=83.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      +|+++|++|||||||+|++++....      ...|...     . ..+   .+|||||....       ...+.+.+...
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~~~-----~-~~~---~~iDt~G~~~~-------~~~~~~~~~~~   59 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQAV-----E-YND---GAIDTPGEYVE-------NRRLYSALIVT   59 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc------cccceeE-----E-EcC---eeecCchhhhh-------hHHHHHHHHHH
Confidence            7999999999999999999987641      1122211     1 112   58999996321       11222222234


Q ss_pred             CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-c
Q 024985          101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN-R  179 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~  179 (259)
                      +.++|++++|+|++++.+..+..+++.    ++    .|+++|+||+|+.+.. ...         ....+..+..+. .
T Consensus        60 ~~~ad~vilv~d~~~~~s~~~~~~~~~----~~----~p~ilv~NK~Dl~~~~-~~~---------~~~~~~~~~~~~~~  121 (142)
T TIGR02528        60 AADADVIALVQSATDPESRFPPGFASI----FV----KPVIGLVTKIDLAEAD-VDI---------ERAKELLETAGAEP  121 (142)
T ss_pred             hhcCCEEEEEecCCCCCcCCChhHHHh----cc----CCeEEEEEeeccCCcc-cCH---------HHHHHHHHHcCCCc
Confidence            678899999999986665544333322    22    3999999999986431 111         122344444443 3


Q ss_pred             EEEEeCCCcccccchhHHHHHHHHHH
Q 024985          180 RVLFDNKTKDAATRTEQVGKLISLVN  205 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~eLl~~i~  205 (259)
                      ++..++.  .+    .++.+|++.+.
T Consensus       122 ~~~~Sa~--~~----~gi~~l~~~l~  141 (142)
T TIGR02528       122 IFEISSV--DE----QGLEALVDYLN  141 (142)
T ss_pred             EEEEecC--CC----CCHHHHHHHHh
Confidence            3333333  32    68999988763

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04114 Rab30 Rab30 subfamily

Probab=99.73  E-value=3.1e-16  Score=121.75  Aligned_cols=159  Identities=14%  Similarity=0.105  Sum_probs=91.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|++|||||||++++++.......  ....+.......+. ..+  ..+.+|||||..           .+..
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~~~~D~~g~~-----------~~~~   71 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVE-IKGEKIKLQIWDTAGQE-----------RFRS   71 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeEEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHH
Confidence            3489999999999999999999866542211  11111122222222 334  368899999943           2222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ........+|++++|+|+++..+... ..++..+......  ..|+++|+||+|+...  ..+..       ...+.+.+
T Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~~i~v~NK~D~~~~--~~i~~-------~~~~~~~~  140 (169)
T cd04114          72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANN--KVITILVGNKIDLAER--REVSQ-------QRAEEFSD  140 (169)
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc--cccCH-------HHHHHHHH
Confidence            22334567899999999974433222 2344445443332  2489999999998644  11111       11222333


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      .....+  +..++..+    .++.++++.|...
T Consensus       141 ~~~~~~--~~~Sa~~~----~gv~~l~~~i~~~  167 (169)
T cd04114         141 AQDMYY--LETSAKES----DNVEKLFLDLACR  167 (169)
T ss_pred             HcCCeE--EEeeCCCC----CCHHHHHHHHHHH
Confidence            323333  33333332    6899999988764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.73  E-value=1.9e-16  Score=122.01  Aligned_cols=153  Identities=10%  Similarity=0.065  Sum_probs=88.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      +|+++|.+|||||||++++...... ..   . +|.......+. .....+.+|||||..           .+.......
T Consensus         2 kv~~~G~~~~GKTsli~~l~~~~~~-~~---~-pt~g~~~~~~~-~~~~~~~l~D~~G~~-----------~~~~~~~~~   64 (159)
T cd04150           2 RILMVGLDAAGKTTILYKLKLGEIV-TT---I-PTIGFNVETVE-YKNISFTVWDVGGQD-----------KIRPLWRHY   64 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCc-cc---C-CCCCcceEEEE-ECCEEEEEEECCCCH-----------hHHHHHHHH
Confidence            7999999999999999999655432 11   1 12222222223 456789999999953           222233345


Q ss_pred             CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc-C
Q 024985          101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC-E  177 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~  177 (259)
                      +.++|++|||+|+++..+...  ..+++.+.....  ...|+++|+||+|+...  ...++....     + . +... .
T Consensus        65 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~-~-~~~~~~  133 (159)
T cd04150          65 FQNTQGLIFVVDSNDRERIGE--AREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDK-----L-G-LHSLRN  133 (159)
T ss_pred             hcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHH-----h-C-ccccCC
Confidence            678899999999984322221  222233322211  12599999999998643  112211110     0 0 0011 1


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVN  205 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~  205 (259)
                      ...+++..++..+    .|+.++++.|.
T Consensus       134 ~~~~~~~~Sak~g----~gv~~~~~~l~  157 (159)
T cd04150         134 RNWYIQATCATSG----DGLYEGLDWLS  157 (159)
T ss_pred             CCEEEEEeeCCCC----CCHHHHHHHHh
Confidence            2344566666555    78999998774

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.73  E-value=1.5e-16  Score=144.97  Aligned_cols=162  Identities=15%  Similarity=0.200  Sum_probs=104.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+++|+++|++++|||||+++|.+..+...  ...+.|.....+.+.+.++..+.||||||....           ....
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-----------~~~r  152 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-----------TSMR  152 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcch-----------hhHH
Confidence            568999999999999999999998765332  234566666665555434448999999996532           2222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      ...+..+|++++|+|++++...+..+.+..+.. .+    .|+++++||+|+.....+.+...+..     ........+
T Consensus       153 ~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~-~~----vPiIVviNKiDl~~~~~e~v~~~L~~-----~g~~~~~~~  222 (587)
T TIGR00487       153 ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA-AN----VPIIVAINKIDKPEANPDRVKQELSE-----YGLVPEDWG  222 (587)
T ss_pred             HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH-cC----CCEEEEEECcccccCCHHHHHHHHHH-----hhhhHHhcC
Confidence            345567899999999987777777666665443 33    39999999999864321222222210     001112223


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      ....++..++..+    .|+.+|++.+..
T Consensus       223 ~~~~~v~iSAktG----eGI~eLl~~I~~  247 (587)
T TIGR00487       223 GDTIFVPVSALTG----DGIDELLDMILL  247 (587)
T ss_pred             CCceEEEEECCCC----CChHHHHHhhhh
Confidence            2233455554444    789999988754

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.73  E-value=3.8e-16  Score=123.44  Aligned_cols=163  Identities=15%  Similarity=0.114  Sum_probs=95.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      .+|+++|.+|+|||||++++++......    ...|....+. .+...++  ..+.+|||||..           .+...
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~----~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~-----------~~~~~   65 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEE----YVPTVFENYVTNIQGPNGKIIELALWDTAGQE-----------EYDRL   65 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCC----CCCeeeeeeEEEEEecCCcEEEEEEEECCCch-----------hHHHH
Confidence            4799999999999999999998765221    1112222221 1221112  378999999943           22222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ......++|++|+|+|++++.+....  .++..+... .  ...|+++|+||+|+...  ......+   .......+..
T Consensus        66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~--~~~piilv~nK~Dl~~~--~~~~~~v---~~~~~~~~~~  137 (187)
T cd04132          66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-C--PGTPIMLVGLKTDLRKD--KNLDRKV---TPAQAESVAK  137 (187)
T ss_pred             HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-C--CCCCEEEEEeChhhhhC--ccccCCc---CHHHHHHHHH
Confidence            33356788999999999855444332  233333331 2  23499999999998643  1111111   1123344454


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..+.. .+|..++..+    .++.+++..+...+..
T Consensus       138 ~~~~~-~~~e~Sa~~~----~~v~~~f~~l~~~~~~  168 (187)
T cd04132         138 KQGAF-AYLECSAKTM----ENVEEVFDTAIEEALK  168 (187)
T ss_pred             HcCCc-EEEEccCCCC----CCHHHHHHHHHHHHHh
Confidence            44431 2455555444    7899999988776554

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.73  E-value=1.7e-16  Score=125.33  Aligned_cols=164  Identities=9%  Similarity=0.042  Sum_probs=92.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+|+++|.+|||||||+|.+.+......     .+|.......+. ..+..+.++||||...           ....
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~~~D~~G~~~-----------~~~~   77 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELA-IGNIKFTTFDLGGHQQ-----------ARRL   77 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEE-ECCEEEEEEECCCCHH-----------HHHH
Confidence            3458999999999999999999998754211     112222222232 4567899999999542           1222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCC-CcccHHhhhCCCCCchHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELED-NDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~-~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      ...++..+|+++||+|+++.-+...  ....+.+.+..  ....|+++|+||+|+... +.+.+.+.+.-  .. .....
T Consensus        78 ~~~~~~~ad~ii~vvD~~~~~~~~~--~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l--~~-~~~~~  152 (184)
T smart00178       78 WKDYFPEVNGIVYLVDAYDKERFAE--SKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGL--TN-TTGSK  152 (184)
T ss_pred             HHHHhCCCCEEEEEEECCcHHHHHH--HHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCC--Cc-ccccc
Confidence            2345568899999999974321111  11122222211  123599999999997543 11223322221  00 00000


Q ss_pred             HHcC-CcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          174 QLCE-NRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       174 ~~~~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      ...+ ....+|..++..+    .|+.++++++.+
T Consensus       153 ~~~~~~~~~i~~~Sa~~~----~g~~~~~~wl~~  182 (184)
T smart00178      153 GKVGVRPLEVFMCSVVRR----MGYGEGFKWLSQ  182 (184)
T ss_pred             cccCCceeEEEEeecccC----CChHHHHHHHHh
Confidence            0001 2334566665444    789999998754

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=5.2e-17  Score=123.89  Aligned_cols=166  Identities=16%  Similarity=0.176  Sum_probs=110.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ...+|+|+|.+|||||||+-++.....-....++.+.........+. .....+.||||.|..           .+....
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~-~~~ikfeIWDTAGQE-----------Ry~sla   71 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVD-DNTIKFEIWDTAGQE-----------RYHSLA   71 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeC-CcEEEEEEEEcCCcc-----------cccccc
Confidence            35799999999999999998887666433223333333222222211 123578899999943           466667


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      +.++++++++|+|+|+++.-+.. -+.|++.|.+..++++  -+.+|.||+|+.+...-.         .+..+...+.-
T Consensus        72 pMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~~R~V~---------~~ea~~yAe~~  140 (200)
T KOG0092|consen   72 PMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLERREVE---------FEEAQAYAESQ  140 (200)
T ss_pred             cceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhhccccc---------HHHHHHHHHhc
Confidence            78999999999999999544433 3677777777555322  566799999998641111         12333444443


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG  212 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~  212 (259)
                      +  ..+|..+++++    .++++++..|.+.++...
T Consensus       141 g--ll~~ETSAKTg----~Nv~~if~~Ia~~lp~~~  170 (200)
T KOG0092|consen  141 G--LLFFETSAKTG----ENVNEIFQAIAEKLPCSD  170 (200)
T ss_pred             C--CEEEEEecccc----cCHHHHHHHHHHhccCcc
Confidence            3  45666666665    899999999999887653

>cd04117 Rab15 Rab15 subfamily

Probab=99.73  E-value=2.5e-16  Score=121.62  Aligned_cols=154  Identities=13%  Similarity=0.134  Sum_probs=91.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceee--EEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTC--EMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~--~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      +|+++|++|+|||||++.+++.......    ..|...  ....+. ..+  ..+.+|||||..           .+...
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~l~i~D~~g~~-----------~~~~~   65 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH----ISTIGVDFKMKTIE-VDGIKVRIQIWDTAGQE-----------RYQTI   65 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCC----CCceeeEEEEEEEE-ECCEEEEEEEEeCCCcH-----------hHHhh
Confidence            7999999999999999999987652221    122222  112222 233  368899999943           22222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      .......+|++++|+|++++-+... ..+++.+.....  ...|+++|.||.|+...  ..+.       ......+.+.
T Consensus        66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~--~~v~-------~~~~~~~~~~  134 (161)
T cd04117          66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP--EGVQKILIGNKADEEQK--RQVG-------DEQGNKLAKE  134 (161)
T ss_pred             HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccc--cCCC-------HHHHHHHHHH
Confidence            3334568899999999985433332 234444433321  23499999999998644  1110       1123334444


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      .+..  ++..++..+    .++.+++..|.+.
T Consensus       135 ~~~~--~~e~Sa~~~----~~v~~~f~~l~~~  160 (161)
T cd04117         135 YGMD--FFETSACTN----SNIKESFTRLTEL  160 (161)
T ss_pred             cCCE--EEEEeCCCC----CCHHHHHHHHHhh
Confidence            4433  355555444    6899999887653

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.73  E-value=4.2e-16  Score=120.17  Aligned_cols=159  Identities=15%  Similarity=0.108  Sum_probs=91.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|++|||||||++++++.......   .+.+.. .+......+  ...+.+|||||...           +....
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~-----------~~~~~   65 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDY---EPTKAD-SYRKKVVLDGEDVQLNILDTAGQED-----------YAAIR   65 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCcccc---CCcchh-hEEEEEEECCEEEEEEEEECCChhh-----------hhHHH
Confidence            47999999999999999999976642211   111111 111111123  24789999999542           12222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ......+|++++|+|+++.-+.. -..++..+..... ....|+++|+||+|+.......         ......+...+
T Consensus        66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~---------~~~~~~~~~~~  135 (164)
T cd04139          66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVS---------SEEAANLARQW  135 (164)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccC---------HHHHHHHHHHh
Confidence            33455679999999987432221 1233333333211 2345999999999987521011         11233444444


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      +..+  +..++..+    .|+.+|++.+.+.+.
T Consensus       136 ~~~~--~~~Sa~~~----~gi~~l~~~l~~~~~  162 (164)
T cd04139         136 GVPY--VETSAKTR----QNVEKAFYDLVREIR  162 (164)
T ss_pred             CCeE--EEeeCCCC----CCHHHHHHHHHHHHH
Confidence            4444  34443333    789999998876654

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.73  E-value=2.4e-17  Score=122.39  Aligned_cols=141  Identities=21%  Similarity=0.306  Sum_probs=92.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      .+|+|+|++|||||||+++|.+.+.      ....|+.+.+.     +    .+|||||-+--       ...+.+.+..
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~------~~~KTq~i~~~-----~----~~IDTPGEyiE-------~~~~y~aLi~   59 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEI------RYKKTQAIEYY-----D----NTIDTPGEYIE-------NPRFYHALIV   59 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCC------CcCccceeEec-----c----cEEECChhhee-------CHHHHHHHHH
Confidence            5899999999999999999998774      12234444432     1    36999996521       2245555555


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR  179 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (259)
                      ....+|+|++|.|++.+.+...-.+.    ..|.    +|+|-|+||+|+..++ ..+         ...++.++.++..
T Consensus        60 ta~dad~V~ll~dat~~~~~~pP~fa----~~f~----~pvIGVITK~Dl~~~~-~~i---------~~a~~~L~~aG~~  121 (143)
T PF10662_consen   60 TAQDADVVLLLQDATEPRSVFPPGFA----SMFN----KPVIGVITKIDLPSDD-ANI---------ERAKKWLKNAGVK  121 (143)
T ss_pred             HHhhCCEEEEEecCCCCCccCCchhh----cccC----CCEEEEEECccCccch-hhH---------HHHHHHHHHcCCC
Confidence            56688999999999854332222222    2233    4999999999988331 222         2455667777765


Q ss_pred             EEEEeCCCcccccchhHHHHHHHHHH
Q 024985          180 RVLFDNKTKDAATRTEQVGKLISLVN  205 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~eLl~~i~  205 (259)
                      .. |..++.++    +|+++|.+.|.
T Consensus       122 ~i-f~vS~~~~----eGi~eL~~~L~  142 (143)
T PF10662_consen  122 EI-FEVSAVTG----EGIEELKDYLE  142 (143)
T ss_pred             Ce-EEEECCCC----cCHHHHHHHHh
Confidence            43 44443333    79999999875

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04111 Rab39 Rab39 subfamily

Probab=99.73  E-value=6.6e-16  Score=124.51  Aligned_cols=164  Identities=16%  Similarity=0.135  Sum_probs=96.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+|+++|++|||||||+|++++......  ..++.+.+.....+...++  ..+.+|||||..           .+...
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~--~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~-----------~~~~~   68 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV--SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE-----------RFRSI   68 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCceeceEEEEEEEEECCCCEEEEEEEeCCcch-----------hHHHH
Confidence            36899999999999999999998764221  1121112222222222223  478999999943           22222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ....+..+|++|+|+|++++-+... ..++..+.+.... ...|++||.||+|+....  .+       .......+.+.
T Consensus        69 ~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~~--~v-------~~~~~~~~~~~  138 (211)
T cd04111          69 TRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQR--QV-------TREEAEKLAKD  138 (211)
T ss_pred             HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEcccccccc--cc-------CHHHHHHHHHH
Confidence            2335667899999999985433222 2344444433221 224788999999986531  11       11123445555


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      .+..  ++..++..+    .++.++++.|.+.+.+.
T Consensus       139 ~~~~--~~e~Sak~g----~~v~e~f~~l~~~~~~~  168 (211)
T cd04111         139 LGMK--YIETSARTG----DNVEEAFELLTQEIYER  168 (211)
T ss_pred             hCCE--EEEEeCCCC----CCHHHHHHHHHHHHHHH
Confidence            5533  444444433    78999999888766543

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04128 Spg1 Spg1p

Probab=99.73  E-value=3.9e-16  Score=122.98  Aligned_cols=161  Identities=15%  Similarity=0.113  Sum_probs=94.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEE--EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM--QRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~--~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      .+|+++|.+|+|||||++++++..... ..   ..|....+  ..+. .++  ..+.+|||+|..           .+..
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~-~~---~~T~g~~~~~~~i~-~~~~~~~l~iwDt~G~~-----------~~~~   64 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDE-DY---IQTLGVNFMEKTIS-IRGTEITFSIWDLGGQR-----------EFIN   64 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC-CC---CCccceEEEEEEEE-ECCEEEEEEEEeCCCch-----------hHHH
Confidence            379999999999999999998776421 11   11222121  1222 333  478999999943           2333


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCc-ccHHhhhCCCCCchHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDND-ETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~-~~~~~~~~~~~~~~l~~~~  173 (259)
                      ....+..++|++++|+|++++.+..+ ..++..+......  ..| ++|+||+|+..... ...+..     ......+.
T Consensus        65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~--~~p-ilVgnK~Dl~~~~~~~~~~~~-----~~~~~~~a  136 (182)
T cd04128          65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKT--AIP-ILVGTKYDLFADLPPEEQEEI-----TKQARKYA  136 (182)
T ss_pred             hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCE-EEEEEchhccccccchhhhhh-----HHHHHHHH
Confidence            34456778999999999985544433 2455555442221  235 68899999864210 011101     11233444


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +..+..  ++..++..+    .++.++++.+.+.+.+
T Consensus       137 ~~~~~~--~~e~SAk~g----~~v~~lf~~l~~~l~~  167 (182)
T cd04128         137 KAMKAP--LIFCSTSHS----INVQKIFKIVLAKAFD  167 (182)
T ss_pred             HHcCCE--EEEEeCCCC----CCHHHHHHHHHHHHHh
Confidence            444433  344444443    7899999988776643

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd00880 Era_like Era (E

Probab=99.73  E-value=3.3e-16  Score=119.42  Aligned_cols=119  Identities=23%  Similarity=0.185  Sum_probs=76.9

Q ss_pred             EEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCC
Q 024985           24 LVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDG  103 (259)
Q Consensus        24 l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (259)
                      ++|++|+|||||+|+|++....... ...+.|............+..+.+|||||+.+...........+.    .....
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~----~~~~~   75 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELAR----RVLER   75 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHH----HHHHh
Confidence            5899999999999999988754322 233444444444333223678999999999876543332222222    23346


Q ss_pred             ccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          104 IHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       104 ~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      +|++++|+|+..........+......     ...|+++|+||+|+...
T Consensus        76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-----~~~~~ivv~nK~D~~~~  119 (163)
T cd00880          76 ADLILFVVDADLRADEEEEKLLELLRE-----RGKPVLLVLNKIDLLPE  119 (163)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCeEEEEEEccccCCh
Confidence            699999999986555554432222222     23499999999998865

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.72  E-value=1.4e-16  Score=122.60  Aligned_cols=156  Identities=12%  Similarity=0.090  Sum_probs=87.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      +|+++|++|||||||+|++++...... .    .|.......+....+..+.+|||||...           +.......
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~----~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~   64 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-I----PTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY   64 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-c----CccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence            489999999999999999998875321 1    1222222223323456899999999532           22222234


Q ss_pred             CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC-
Q 024985          101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE-  177 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-  177 (259)
                      +..+|++++|+|+++..+...  ...++...+...  ...|+++|+||+|+...  ...++.... .  .+   ...+. 
T Consensus        65 ~~~~~~iv~v~D~~~~~~~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~-~--~~---~~~~~~  134 (160)
T cd04156          65 LENTDGLVYVVDSSDEARLDE--SQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRR-F--KL---KKYCSD  134 (160)
T ss_pred             hccCCEEEEEEECCcHHHHHH--HHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHH-c--CC---cccCCC
Confidence            557799999999984432221  122222222111  23599999999998543  112211110 0  00   01111 


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      ..+.++..++..+    +|+.++++.|..
T Consensus       135 ~~~~~~~~Sa~~~----~gv~~~~~~i~~  159 (160)
T cd04156         135 RDWYVQPCSAVTG----EGLAEAFRKLAS  159 (160)
T ss_pred             CcEEEEecccccC----CChHHHHHHHhc
Confidence            1223455555443    799999988753

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.72  E-value=2e-16  Score=126.85  Aligned_cols=163  Identities=13%  Similarity=0.138  Sum_probs=95.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc-ccccCCCCCcceeeEEEEEEee--------------------------------
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRA-FKSKAGSSGVTKTCEMQRTMLK--------------------------------   66 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~T~~~~~~~~~~~--------------------------------   66 (259)
                      .+|+++|+.|+|||||+.+|.+... ........+.|..+.+....+.                                
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            3799999999999999999987632 1111112233333332222211                                


Q ss_pred             CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CCHhHHHHHHHHHHHhcccccCeEEEEEe
Q 024985           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-FSEEGGAAIHSLESLFGKKVFDYMIVVFT  145 (259)
Q Consensus        67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~n  145 (259)
                      ....+.||||||..           .+...+......+|++++|+|++.+ ........+..+.. .+.   .|+++|+|
T Consensus        81 ~~~~i~~iDtPG~~-----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvN  145 (203)
T cd01888          81 LVRHVSFVDCPGHE-----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQN  145 (203)
T ss_pred             cccEEEEEECCChH-----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEE
Confidence            12679999999932           3334444455677999999999853 34444455555533 232   37899999


Q ss_pred             CCCCCCCCcccHHhhhCCCCCchHHHHHHHc---CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          146 GGNELEDNDETLEDYLGPECPKPLKEILQLC---ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       146 k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      |+|+...  ......+.     .++..+...   ...++.+++  ..+    .++.+|++.+.+.+++
T Consensus       146 K~Dl~~~--~~~~~~~~-----~i~~~~~~~~~~~~~i~~vSA--~~g----~gi~~L~~~l~~~l~~  200 (203)
T cd01888         146 KIDLVKE--EQALENYE-----QIKKFVKGTIAENAPIIPISA--QLK----YNIDVLLEYIVKKIPT  200 (203)
T ss_pred             chhccCH--HHHHHHHH-----HHHHHHhccccCCCcEEEEeC--CCC----CCHHHHHHHHHHhCCC
Confidence            9998754  22222111     223333221   122333333  332    7899999999887654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.72  E-value=3.3e-16  Score=122.50  Aligned_cols=154  Identities=12%  Similarity=0.063  Sum_probs=90.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ..+|+++|++|+|||||++++++......     ..|......... ..+..+.+|||||...           +.....
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~l~D~~G~~~-----------~~~~~~   77 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIV-YKNIRFLMWDIGGQES-----------LRSSWN   77 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEE-ECCeEEEEEECCCCHH-----------HHHHHH
Confidence            57999999999999999999987664221     122222233333 4567899999999542           222223


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH-HH
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL-QL  175 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~-~~  175 (259)
                      ..+.++|+++||+|++++-+...  ..+.+.+.+...  ...|+++|+||+|+...  ...+++..        .+. ..
T Consensus        78 ~~~~~~d~vi~V~D~s~~~~~~~--~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~--------~l~~~~  145 (174)
T cd04153          78 TYYTNTDAVILVIDSTDRERLPL--TKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISE--------SLGLTS  145 (174)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHH--------HhCccc
Confidence            34567899999999984422211  112222222111  23599999999998643  11221111        000 01


Q ss_pred             c-CCcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985          176 C-ENRRVLFDNKTKDAATRTEQVGKLISLVN  205 (259)
Q Consensus       176 ~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~  205 (259)
                      + ...+.++..++..+    .|+.++++.|.
T Consensus       146 ~~~~~~~~~~~SA~~g----~gi~e~~~~l~  172 (174)
T cd04153         146 IRDHTWHIQGCCALTG----EGLPEGLDWIA  172 (174)
T ss_pred             ccCCceEEEecccCCC----CCHHHHHHHHh
Confidence            1 12234566665544    78999998875

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.72  E-value=2.3e-16  Score=122.64  Aligned_cols=162  Identities=12%  Similarity=0.031  Sum_probs=91.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      +|+++|.+|||||||+|.+.+..  .....   .|.......+. ..+..+.+|||||..           .+......+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~~---~t~g~~~~~~~-~~~~~~~i~D~~G~~-----------~~~~~~~~~   63 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEI--PKKVA---PTVGFTPTKLR-LDKYEVCIFDLGGGA-----------NFRGIWVNY   63 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCC--Ccccc---CcccceEEEEE-ECCEEEEEEECCCcH-----------HHHHHHHHH
Confidence            48999999999999999999762  22211   12112222233 456789999999942           222223345


Q ss_pred             CCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985          101 KDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR  179 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (259)
                      +..+|+++||+|+++..+..+ ..++..+.... .....|+++|+||.|+...  ....+....   ..+..+.+..+..
T Consensus        64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~~--~~~~~i~~~---~~l~~~~~~~~~~  137 (167)
T cd04161          64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHP-RVSGKPILVLANKQDKKNA--LLGADVIEY---LSLEKLVNENKSL  137 (167)
T ss_pred             HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCc-cccCCcEEEEEeCCCCcCC--CCHHHHHHh---cCcccccCCCCce
Confidence            678899999999984432222 22333332211 1123599999999998654  323332221   0122222222334


Q ss_pred             EEEEeCCCccc--ccchhHHHHHHHHHH
Q 024985          180 RVLFDNKTKDA--ATRTEQVGKLISLVN  205 (259)
Q Consensus       180 ~~~~~~~~~~~--~~~~~~i~eLl~~i~  205 (259)
                      +.++..++..+  .....|+.+.++++.
T Consensus       138 ~~~~~~Sa~~g~~~~~~~g~~~~~~wl~  165 (167)
T cd04161         138 CHIEPCSAIEGLGKKIDPSIVEGLRWLL  165 (167)
T ss_pred             EEEEEeEceeCCCCccccCHHHHHHHHh
Confidence            45555554432  011257999888875

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PTZ00369 Ras-like protein; Provisional

Probab=99.72  E-value=5e-16  Score=123.14  Aligned_cols=162  Identities=18%  Similarity=0.127  Sum_probs=94.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|.+|||||||++++.+........    .|....+......++  ..+.+|||||..+.           ..
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~   68 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYD----PTIEDSYRKQCVIDEETCLLDILDTAGQEEY-----------SA   68 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcC----CchhhEEEEEEEECCEEEEEEEEeCCCCccc-----------hh
Confidence            45899999999999999999999776422111    111111111111233  36789999996532           11


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .....+..+|++++|+|++++-+... ..++..+.+... ....|+++|+||+|+...  ..+.       ......+.+
T Consensus        69 l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~--~~i~-------~~~~~~~~~  138 (189)
T PTZ00369         69 MRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSE--RQVS-------TGEGQELAK  138 (189)
T ss_pred             hHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--cccC-------HHHHHHHHH
Confidence            22234557899999999985543222 334444444322 123499999999997543  1111       111223334


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..+..  +|..++..+    .|+.+++..+.+.+..
T Consensus       139 ~~~~~--~~e~Sak~~----~gi~~~~~~l~~~l~~  168 (189)
T PTZ00369        139 SFGIP--FLETSAKQR----VNVDEAFYELVREIRK  168 (189)
T ss_pred             HhCCE--EEEeeCCCC----CCHHHHHHHHHHHHHH
Confidence            44433  344444443    7899999988766543

>cd04116 Rab9 Rab9 subfamily

Probab=99.72  E-value=5.6e-16  Score=120.53  Aligned_cols=160  Identities=16%  Similarity=0.081  Sum_probs=92.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|++|+|||||++++++........  +..+.......+. .++  ..+.+|||||..           .+..
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~i~D~~G~~-----------~~~~   69 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLF--HTIGVEFLNKDLE-VDGHFVTLQIWDTAGQE-----------RFRS   69 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcC--CceeeEEEEEEEE-ECCeEEEEEEEeCCChH-----------HHHH
Confidence            45799999999999999999999776422211  1111111111222 233  367899999932           2333


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI  172 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (259)
                      ........+|++++|+|++++-+... ..+...+......  ....|+++|+||+|+.... ..         ...++++
T Consensus        70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~---------~~~~~~~  139 (170)
T cd04116          70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-VS---------TEEAQAW  139 (170)
T ss_pred             hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc-cC---------HHHHHHH
Confidence            33445678899999999985433322 2333434332211  1234999999999976321 11         1234444


Q ss_pred             HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      .+..+.. .+|..++..+    .++.++++.+.+
T Consensus       140 ~~~~~~~-~~~e~Sa~~~----~~v~~~~~~~~~  168 (170)
T cd04116         140 CRENGDY-PYFETSAKDA----TNVAAAFEEAVR  168 (170)
T ss_pred             HHHCCCC-eEEEEECCCC----CCHHHHHHHHHh
Confidence            4444422 2344444433    688888887654

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.72  E-value=9.7e-17  Score=133.96  Aligned_cols=155  Identities=21%  Similarity=0.270  Sum_probs=90.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCC------CCCcceeeEEEEEEe-eCC--cEEEEEeCCCCCCCCCChHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAG------SSGVTKTCEMQRTML-KDG--QVVNVIDTPGLFDSSADSEFV   89 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~T~~~~~~~~~~-~~~--~~~~liDTPG~~~~~~~~~~~   89 (259)
                      .++|+|+|.+|+|||||||+|++.........      ....|.......... .++  ..+.||||||+++.. ++...
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i-~n~~~   82 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI-DNSDC   82 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS-THCHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc-cchhh
Confidence            47999999999999999999999876554311      111222233322222 222  379999999998763 33322


Q ss_pred             HHHHHHHH--------hh---------cCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985           90 SKEIVKCI--------GM---------AKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE  151 (259)
Q Consensus        90 ~~~~~~~~--------~~---------~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~  151 (259)
                      +..+..++        ..         ....+|++||+++++ .++.+.|...++.|.+.      .++|.|+.|+|.+.
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~lt  156 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTLT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS-
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEecccccC
Confidence            33333222        11         124679999999986 57999998888877653      38999999999998


Q ss_pred             CCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCC
Q 024985          152 DNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKT  187 (259)
Q Consensus       152 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  187 (259)
                      .  +++..+..     .++..++..+-.++.|....
T Consensus       157 ~--~el~~~k~-----~i~~~l~~~~I~~f~f~~~~  185 (281)
T PF00735_consen  157 P--EELQAFKQ-----RIREDLEENNIKIFDFPEDD  185 (281)
T ss_dssp             H--HHHHHHHH-----HHHHHHHHTT--S-------
T ss_pred             H--HHHHHHHH-----HHHHHHHHcCceeecccccc
Confidence            7  66665533     56677777777776666543

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.72  E-value=2.8e-16  Score=120.76  Aligned_cols=152  Identities=11%  Similarity=0.051  Sum_probs=87.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      +|+++|.+|||||||++++++... ...    ..|......... ..+..+.+|||||....           .......
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~----~~t~~~~~~~~~-~~~~~~~i~D~~G~~~~-----------~~~~~~~   63 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTT----IPTIGFNVETVE-YKNVSFTVWDVGGQDKI-----------RPLWKHY   63 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCC----CCCcCcceEEEE-ECCEEEEEEECCCChhh-----------HHHHHHH
Confidence            589999999999999999998873 111    112222223233 45678999999995421           1122234


Q ss_pred             CCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH---c
Q 024985          101 KDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL---C  176 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~---~  176 (259)
                      +..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+...  ...++..         ..+..   .
T Consensus        64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~--~~~~~~~---------~~~~~~~~~  131 (158)
T cd00878          64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA--LSVSELI---------EKLGLEKIL  131 (158)
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc--cCHHHHH---------HhhChhhcc
Confidence            456799999999984322111 222332222111 123599999999998764  2222211         11111   1


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVN  205 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~  205 (259)
                      .....++..++..+    .|+.++++.|.
T Consensus       132 ~~~~~~~~~Sa~~~----~gv~~~~~~l~  156 (158)
T cd00878         132 GRRWHIQPCSAVTG----DGLDEGLDWLL  156 (158)
T ss_pred             CCcEEEEEeeCCCC----CCHHHHHHHHh
Confidence            12233444444443    78999888764

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04176 Rap2 Rap2 subgroup

Probab=99.71  E-value=4.7e-16  Score=120.07  Aligned_cols=157  Identities=13%  Similarity=0.128  Sum_probs=90.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|.+|+|||||+++++........   .++........+. .++.  .+.||||||.....           ...
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~~-----------~~~   66 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKY---DPTIEDFYRKEIE-VDSSPSVLEILDTAGTEQFA-----------SMR   66 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCC---CCchhheEEEEEE-ECCEEEEEEEEECCCccccc-----------chH
Confidence            68999999999999999999877652221   1111111112222 2333  57889999964321           112


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+.++|++++|+|++++-+..+ ..++..+.+... ....|+++|+||+|+....  ...       ......+.+..
T Consensus        67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~~--~~~-------~~~~~~~~~~~  136 (163)
T cd04176          67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESER--EVS-------SAEGRALAEEW  136 (163)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcC--ccC-------HHHHHHHHHHh
Confidence            223456799999999985433222 344555554322 1235999999999976431  111       11122333333


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      +..  ++..++..+    .++.+++..+...
T Consensus       137 ~~~--~~~~Sa~~~----~~v~~l~~~l~~~  161 (163)
T cd04176         137 GCP--FMETSAKSK----TMVNELFAEIVRQ  161 (163)
T ss_pred             CCE--EEEecCCCC----CCHHHHHHHHHHh
Confidence            333  344444333    7899999887653

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>CHL00071 tufA elongation factor Tu

Probab=99.71  E-value=3.3e-16  Score=138.14  Aligned_cols=139  Identities=17%  Similarity=0.243  Sum_probs=94.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccc--------------cCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKS--------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~--------------~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~   81 (259)
                      ..+..+|+++|++++|||||+|+|++......              .....+.|.......+. .++..+.|+||||+. 
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~~~iDtPGh~-   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHA-   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc-cCCeEEEEEECCChH-
Confidence            45678999999999999999999997522110              01124555555444433 356789999999943 


Q ss_pred             CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe-EEEEEeCCCCCCCCcccHHhh
Q 024985           82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY-MIVVFTGGNELEDNDETLEDY  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~nk~D~~~~~~~~~~~~  160 (259)
                                .+...+......+|++++|+|+..++..++.+.+..+.. ++.    | +++|+||+|+.+.  ....+.
T Consensus        87 ----------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~-~g~----~~iIvvvNK~D~~~~--~~~~~~  149 (409)
T CHL00071         87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ-VGV----PNIVVFLNKEDQVDD--EELLEL  149 (409)
T ss_pred             ----------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC----CEEEEEEEccCCCCH--HHHHHH
Confidence                      233333344557799999999987888888888887765 443    6 7789999999754  333333


Q ss_pred             hCCCCCchHHHHHHHcC
Q 024985          161 LGPECPKPLKEILQLCE  177 (259)
Q Consensus       161 ~~~~~~~~l~~~~~~~~  177 (259)
                      +.    ..+..++..++
T Consensus       150 ~~----~~l~~~l~~~~  162 (409)
T CHL00071        150 VE----LEVRELLSKYD  162 (409)
T ss_pred             HH----HHHHHHHHHhC
Confidence            22    24666666655

>cd04126 Rab20 Rab20 subfamily

Probab=99.71  E-value=7.5e-16  Score=124.54  Aligned_cols=167  Identities=18%  Similarity=0.105  Sum_probs=96.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      .+|+++|.+|||||||++++++.....  .   ..|....+.... .....+.||||||....           ......
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~---~~Tig~~~~~~~-~~~~~l~iwDt~G~e~~-----------~~l~~~   63 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD--T---VSTVGGAFYLKQ-WGPYNISIWDTAGREQF-----------HGLGSM   63 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC--C---CCccceEEEEEE-eeEEEEEEEeCCCcccc-----------hhhHHH
Confidence            479999999999999999999877522  1   112222222222 23457899999996432           112223


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcc---------cHHh-hhCCCCCch
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGG-AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDE---------TLED-YLGPECPKP  168 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~---------~~~~-~~~~~~~~~  168 (259)
                      .+..+|++|+|+|++++-+.... .++..+.+....  ..|+++|.||+|+......         ...+ ....-....
T Consensus        64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~--~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e  141 (220)
T cd04126          64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANE--DCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLED  141 (220)
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccccccccccccccccccccCCHHH
Confidence            45688999999999855444432 233334433222  2489999999998652100         0000 000011123


Q ss_pred             HHHHHHHcCCc------------EEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          169 LKEILQLCENR------------RVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       169 l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .+.+.+..+..            ..+|..++.++    .++.+++..+.+.+.
T Consensus       142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg----~~V~elf~~i~~~~~  190 (220)
T cd04126         142 AKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG----YNVDELFEYLFNLVL  190 (220)
T ss_pred             HHHHHHHhCccccccccccccccceEEEeeCCCC----CCHHHHHHHHHHHHH
Confidence            33444443311            33556666554    789999998876654

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>PLN03108 Rab family protein; Provisional

Probab=99.71  E-value=2e-15  Score=121.71  Aligned_cols=160  Identities=14%  Similarity=0.090  Sum_probs=91.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|++|+|||||+|.+++.........+.+.+...  ..+. .++  ..+.+|||||..           .+..
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~--~~i~-~~~~~i~l~l~Dt~G~~-----------~~~~   70 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA--RMIT-IDNKPIKLQIWDTAGQE-----------SFRS   70 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEE--EEEE-ECCEEEEEEEEeCCCcH-----------HHHH
Confidence            35799999999999999999999876422211112221111  1122 233  368899999943           1222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .....+..+|++++|+|+++.-+... ..++..+.....  ...|+++|+||+|+.....-.         ......+.+
T Consensus        71 ~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~~~---------~~~~~~~~~  139 (210)
T PLN03108         71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVS---------TEEGEQFAK  139 (210)
T ss_pred             HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccccCCC---------HHHHHHHHH
Confidence            22334457899999999984433322 234444433222  234999999999986531111         112333444


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ..+..  ++..++...    .++.+++..+...+
T Consensus       140 ~~~~~--~~e~Sa~~~----~~v~e~f~~l~~~~  167 (210)
T PLN03108        140 EHGLI--FMEASAKTA----QNVEEAFIKTAAKI  167 (210)
T ss_pred             HcCCE--EEEEeCCCC----CCHHHHHHHHHHHH
Confidence            43433  444444333    68888887665544

>cd04148 RGK RGK subfamily

Probab=99.71  E-value=7.2e-16  Score=125.16  Aligned_cols=161  Identities=15%  Similarity=0.052  Sum_probs=92.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCc-ceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGV-TKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~-T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      .+|+++|.+|||||||++++++.........+... ........+. .....+.+|||||...          .+..   
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~i~Dt~G~~~----------~~~~---   66 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVD-GEESTLVVIDHWEQEM----------WTED---   66 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEEC-CEEEEEEEEeCCCcch----------HHHh---
Confidence            47999999999999999999866542111111111 1111111111 2335789999999641          1111   


Q ss_pred             hcCC-CccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           99 MAKD-GIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        99 ~~~~-~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      .+.. ++|++++|+|++++-+... ..++..+... ......|+++|+||+|+...  ..+.       ....+.+....
T Consensus        67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~-~~~~~~piilV~NK~Dl~~~--~~v~-------~~~~~~~a~~~  136 (221)
T cd04148          67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRN-RQLEDRPIILVGNKSDLARS--REVS-------VQEGRACAVVF  136 (221)
T ss_pred             HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhcccc--ceec-------HHHHHHHHHHc
Confidence            1223 7899999999985433322 3444445442 11234599999999998654  1110       11122333443


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +..+  +..++..+    .++.++++.+...+..
T Consensus       137 ~~~~--~e~SA~~~----~gv~~l~~~l~~~~~~  164 (221)
T cd04148         137 DCKF--IETSAGLQ----HNVDELLEGIVRQIRL  164 (221)
T ss_pred             CCeE--EEecCCCC----CCHHHHHHHHHHHHHh
Confidence            4333  34443333    7899999998877753

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.71  E-value=1e-15  Score=125.08  Aligned_cols=88  Identities=20%  Similarity=0.278  Sum_probs=60.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      +|+++|.+|+|||||+|+|+|.....  ...+++|..+....+. .++..+.+|||||+.............+    ...
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v--~~~~~tT~~~~~g~~~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~   74 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEV--AAYEFTTLTCVPGVLE-YKGAKIQLLDLPGIIEGAADGKGRGRQV----IAV   74 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccc--cCCCCccccceEEEEE-ECCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence            68999999999999999999886422  2234455555444443 5678999999999875432222222222    234


Q ss_pred             CCCccEEEEEEeCCC
Q 024985          101 KDGIHAVLLVFSVRN  115 (259)
Q Consensus       101 ~~~~~~il~v~d~~~  115 (259)
                      ...+|++++|+|+++
T Consensus        75 ~~~ad~il~V~D~t~   89 (233)
T cd01896          75 ARTADLILMVLDATK   89 (233)
T ss_pred             hccCCEEEEEecCCc
Confidence            567799999999873

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.71  E-value=3.1e-16  Score=145.06  Aligned_cols=165  Identities=14%  Similarity=0.202  Sum_probs=104.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee---CCcEEEEEeCCCCCCCCCChHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK---DGQVVNVIDTPGLFDSSADSEFVSKEI   93 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~---~~~~~~liDTPG~~~~~~~~~~~~~~~   93 (259)
                      ...++|+++|.+|+|||||+++|.+......  ...+.|.....+.+.+.   .+..+.||||||..           .+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~--e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe-----------~F  308 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQK--EAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE-----------AF  308 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccc--cCCccccccceEEEEEEecCCceEEEEEECCcHH-----------HH
Confidence            4568999999999999999999998765322  22445555444443332   34789999999953           33


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      .......+..+|++|+|+|++++...+..+.+..+.. .+    .|++||+||+|+.......+.+.+..     ...+.
T Consensus       309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~-~~----iPiIVViNKiDl~~~~~e~v~~eL~~-----~~ll~  378 (742)
T CHL00189        309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA-AN----VPIIVAINKIDKANANTERIKQQLAK-----YNLIP  378 (742)
T ss_pred             HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh-cC----ceEEEEEECCCccccCHHHHHHHHHH-----hccch
Confidence            3333445567799999999987777777777766543 33    39999999999865311111111110     00011


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      +..+..+.++..++..+    .|+.+|++.|..+.
T Consensus       379 e~~g~~vpvv~VSAktG----~GIdeLle~I~~l~  409 (742)
T CHL00189        379 EKWGGDTPMIPISASQG----TNIDKLLETILLLA  409 (742)
T ss_pred             HhhCCCceEEEEECCCC----CCHHHHHHhhhhhh
Confidence            22232233444444443    78999999886653

>cd04151 Arl1 Arl1 subfamily

Probab=99.71  E-value=3.7e-16  Score=120.15  Aligned_cols=113  Identities=12%  Similarity=0.011  Sum_probs=70.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      +|+++|++|+|||||++++.......  .   ..|.......+. ..+..+.+|||||...           +......+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~---~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~-----------~~~~~~~~   63 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT--T---IPTIGFNVETVT-YKNLKFQVWDLGGQTS-----------IRPYWRCY   63 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC--c---CCccCcCeEEEE-ECCEEEEEEECCCCHH-----------HHHHHHHH
Confidence            58999999999999999997665421  1   112222222233 4567899999999642           22222334


Q ss_pred             CCCccEEEEEEeCCCCCCHh--HHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          101 KDGIHAVLLVFSVRNRFSEE--GGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      +..+|++|+|+|+++..+..  ...+...+....  ....|+++|+||+|+...
T Consensus        64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~  115 (158)
T cd04151          64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEE--LKGAVLLVFANKQDMPGA  115 (158)
T ss_pred             hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchh--hcCCcEEEEEeCCCCCCC
Confidence            56789999999998432211  122222222211  123599999999998644

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.71  E-value=2.7e-16  Score=121.75  Aligned_cols=160  Identities=14%  Similarity=0.193  Sum_probs=89.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      +|+++|++|||||||++++++.... ...  .+++......... .++.  .+.+|||||.......      ....   
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~-~~~--~~t~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~~~------~~~~---   67 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFI-GEY--DPNLESLYSRQVT-IDGEQVSLEILDTAGQQQADTE------QLER---   67 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccc-ccc--CCChHHhceEEEE-ECCEEEEEEEEECCCCcccccc------hHHH---
Confidence            4899999999999999999865431 111  1111111111122 2333  6889999997631000      1111   


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                       ....+|++|+|+|++++-+... ..++..+..........|+++|+||+|+...  ..+.       ......+.+..+
T Consensus        68 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~v~-------~~~~~~~~~~~~  137 (165)
T cd04146          68 -SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY--RQVS-------TEEGEKLASELG  137 (165)
T ss_pred             -HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh--CccC-------HHHHHHHHHHcC
Confidence             2345699999999985533332 3345555553211223599999999997533  1110       112333444444


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ..  +|..++..+   ..++.+++..+...+
T Consensus       138 ~~--~~e~Sa~~~---~~~v~~~f~~l~~~~  163 (165)
T cd04146         138 CL--FFEVSAAED---YDGVHSVFHELCREV  163 (165)
T ss_pred             CE--EEEeCCCCC---chhHHHHHHHHHHHH
Confidence            33  344444322   148999999887654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd00157 Rho Rho (Ras homology) family

Probab=99.70  E-value=4.7e-16  Score=120.87  Aligned_cols=163  Identities=16%  Similarity=0.057  Sum_probs=90.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      .+|+++|++|||||||+|+|++.......   .++........... .....+.+|||||.....           ....
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~-----------~~~~   66 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEY---VPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD-----------RLRP   66 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCC---CCceeeeeEEEEEECCEEEEEEEEeCCCccccc-----------ccch
Confidence            47999999999999999999988752111   11111111111111 123479999999965321           1112


Q ss_pred             hcCCCccEEEEEEeCCCCCCHh--HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh----CCCCCchHHHH
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEE--GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL----GPECPKPLKEI  172 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~----~~~~~~~l~~~  172 (259)
                      .....+|++++|+|.+++.+..  ...++..+.....   ..|+++|+||+|+...  ......+    ..-.......+
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~v~~~~~~~~  141 (171)
T cd00157          67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD--ENTLKKLEKGKEPITPEEGEKL  141 (171)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc--hhhhhhcccCCCccCHHHHHHH
Confidence            2346789999999998433322  2334444444222   3599999999998765  2211100    00001122334


Q ss_pred             HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      ....+.. .++..++..+    .++.++++.|.+
T Consensus       142 ~~~~~~~-~~~~~Sa~~~----~gi~~l~~~i~~  170 (171)
T cd00157         142 AKEIGAI-GYMECSALTQ----EGVKEVFEEAIR  170 (171)
T ss_pred             HHHhCCe-EEEEeecCCC----CCHHHHHHHHhh
Confidence            4444431 2344443333    689999988754

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.70  E-value=2.9e-16  Score=146.48  Aligned_cols=162  Identities=15%  Similarity=0.189  Sum_probs=105.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ...++|+++|.+++|||||+++|.+..+..  ....+.|.....+.+. .++..+.||||||..+.           ...
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~--~e~~GIT~~iga~~v~-~~~~~ItfiDTPGhe~F-----------~~m  353 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAA--GEAGGITQHIGAYQVE-TNGGKITFLDTPGHEAF-----------TAM  353 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccc--cccCceeeeccEEEEE-ECCEEEEEEECCCCccc-----------hhH
Confidence            456899999999999999999998876532  2234566666666555 45688999999997542           122


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      .......+|++|+|+|++++...+..+.+..+.. .+    .|++||+||+|+...+...+...+..     ...+.+.+
T Consensus       354 ~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~-~~----vPiIVviNKiDl~~a~~e~V~~eL~~-----~~~~~e~~  423 (787)
T PRK05306        354 RARGAQVTDIVVLVVAADDGVMPQTIEAINHAKA-AG----VPIIVAINKIDKPGANPDRVKQELSE-----YGLVPEEW  423 (787)
T ss_pred             HHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh-cC----CcEEEEEECccccccCHHHHHHHHHH-----hcccHHHh
Confidence            2234456799999999987777777777765544 33    39999999999864321111111110     01112223


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      +..+.+|..++..+    .|+.+|++.|..
T Consensus       424 g~~vp~vpvSAktG----~GI~eLle~I~~  449 (787)
T PRK05306        424 GGDTIFVPVSAKTG----EGIDELLEAILL  449 (787)
T ss_pred             CCCceEEEEeCCCC----CCchHHHHhhhh
Confidence            33333444444443    789999988764

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.70  E-value=7.5e-16  Score=140.92  Aligned_cols=164  Identities=20%  Similarity=0.261  Sum_probs=107.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCccc-ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFK-SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~-~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      .|+++|.+++|||||+|+|+|...-. ......+.|.+..+..+. .++..+.+|||||..           .+...+..
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~-~~~~~v~~iDtPGhe-----------~f~~~~~~   69 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFP-LPDYRLGFIDVPGHE-----------KFISNAIA   69 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEE-eCCEEEEEEECCCHH-----------HHHHHHHh
Confidence            68999999999999999999854210 111234566666655555 456889999999942           34444455


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN-  178 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  178 (259)
                      .+.++|++++|+|++.+...+..+.+..+.. .+.   .+++||+||+|+.+.  ..+....     ..++.++...+. 
T Consensus        70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv~~--~~~~~~~-----~ei~~~l~~~~~~  138 (581)
T TIGR00475        70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGI---PHTIVVITKADRVNE--EEIKRTE-----MFMKQILNSYIFL  138 (581)
T ss_pred             hhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCCCH--HHHHHHH-----HHHHHHHHHhCCC
Confidence            5678899999999997777777777766544 443   139999999998754  3222211     134455544321 


Q ss_pred             -cEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          179 -RRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       179 -~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                       .+.++..++..+    .|+.+|+..+..++...
T Consensus       139 ~~~~ii~vSA~tG----~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       139 KNAKIFKTSAKTG----QGIGELKKELKNLLESL  168 (581)
T ss_pred             CCCcEEEEeCCCC----CCchhHHHHHHHHHHhC
Confidence             123344444333    68899998888776653

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.70  E-value=3.6e-16  Score=127.44  Aligned_cols=130  Identities=16%  Similarity=0.200  Sum_probs=95.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHH-HHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEF-VSKEIVK   95 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~-~~~~~~~   95 (259)
                      ...++|+++|.||+|||||.|.+.|..+++  ++....|+.+....+...+..+++|+||||+......... ....+..
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~--vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSA--VSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCcccc--ccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            346899999999999999999999999844  4456667777777776567789999999999865433221 1222222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ....+...+|++++|+|+++.-......+|..+......    |.++|.||+|....
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~i----ps~lvmnkid~~k~  200 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKI----PSILVMNKIDKLKQ  200 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcC----Cceeeccchhcchh
Confidence            334455677999999999854444455677777776554    99999999998865

>cd04134 Rho3 Rho3 subfamily

Probab=99.70  E-value=8.9e-16  Score=121.68  Aligned_cols=166  Identities=16%  Similarity=0.082  Sum_probs=97.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|.+|||||||++++++.......    ..|....+......++  ..+.+|||||...           +....
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~-----------~~~l~   65 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVY----EPTVFENYVHDIFVDGLHIELSLWDTAGQEE-----------FDRLR   65 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCcc----CCcceeeeEEEEEECCEEEEEEEEECCCChh-----------ccccc
Confidence            37999999999999999999987652211    1121111111111233  4789999999532           11222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC-----CCCchHH
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP-----ECPKPLK  170 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~-----~~~~~l~  170 (259)
                      ...+..+|++++|+|+++.-+....  .++..+....   ...|+++|.||+|+...  ....+.+..     .......
T Consensus        66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~  140 (189)
T cd04134          66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREA--RNERDDLQRYGKHTISYEEGL  140 (189)
T ss_pred             cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccC--hhhHHHHhhccCCCCCHHHHH
Confidence            3356788999999999855444332  3555555432   23599999999998754  222111100     0011122


Q ss_pred             HHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          171 EILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .+....+ .+.+|..++..+    .++.+++..+...+..
T Consensus       141 ~~~~~~~-~~~~~e~SAk~~----~~v~e~f~~l~~~~~~  175 (189)
T cd04134         141 AVAKRIN-ALRYLECSAKLN----RGVNEAFTEAARVALN  175 (189)
T ss_pred             HHHHHcC-CCEEEEccCCcC----CCHHHHHHHHHHHHhc
Confidence            3333323 234566665554    7899999988877654

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.70  E-value=9.3e-16  Score=119.69  Aligned_cols=163  Identities=18%  Similarity=0.081  Sum_probs=93.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        22 I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      |+++|.+|||||||++++++...... .  .+ |....+......++.  .+.+|||||....           ......
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~-~--~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~~   65 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPED-Y--VP-TVFENYSADVEVDGKPVELGLWDTAGQEDY-----------DRLRPL   65 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCC-C--CC-cEEeeeeEEEEECCEEEEEEEEECCCCccc-----------chhchh
Confidence            68999999999999999998764221 1  11 111111111113333  6899999995421           112233


Q ss_pred             cCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC----CCCchHHHHH
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP----ECPKPLKEIL  173 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~----~~~~~l~~~~  173 (259)
                      .+.++|++|+|+|+++.-+...  ..++..+....   ...|+++|+||+|+.... ...+++...    -.......+.
T Consensus        66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~  141 (174)
T smart00174       66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEALA  141 (174)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHHH
Confidence            4668899999999985433332  23455554432   235999999999987531 222222211    0112233455


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      +..+. ..++..++..+    .++.++++.+...+
T Consensus       142 ~~~~~-~~~~e~Sa~~~----~~v~~lf~~l~~~~  171 (174)
T smart00174      142 KRIGA-VKYLECSALTQ----EGVREVFEEAIRAA  171 (174)
T ss_pred             HHcCC-cEEEEecCCCC----CCHHHHHHHHHHHh
Confidence            55443 12444444443    78999999877654

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.70  E-value=1.4e-15  Score=119.09  Aligned_cols=161  Identities=15%  Similarity=0.057  Sum_probs=95.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      .+|+++|.+|+|||||++++....... .   ...|....+. .+. .++  ..+.+|||||...           +...
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~-~---~~pt~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~~   65 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPS-E---YVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED-----------YDRL   65 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC-C---CCCceeeeeEEEEE-ECCEEEEEEEEECCCccc-----------hhhh
Confidence            589999999999999999999766421 1   1122222221 222 334  4688999999643           2222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCC-----CCchH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPE-----CPKPL  169 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~-----~~~~l  169 (259)
                      ....+.++|++|+|+|++++-+....  .++..+.... .  ..|+++|.||+|+...  ....+.+...     ..+..
T Consensus        66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-~--~~piilvgnK~Dl~~~--~~~~~~l~~~~~~~v~~~~~  140 (175)
T cd01874          66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-P--KTPFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETG  140 (175)
T ss_pred             hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECHhhhhC--hhhHHHhhhccCCCcCHHHH
Confidence            23356688999999999855444432  3555555432 1  3599999999997644  2222211110     01122


Q ss_pred             HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      +.+.+..+ ...+|..++..+    .|+.++++.+..
T Consensus       141 ~~~a~~~~-~~~~~e~SA~tg----~~v~~~f~~~~~  172 (175)
T cd01874         141 EKLARDLK-AVKYVECSALTQ----KGLKNVFDEAIL  172 (175)
T ss_pred             HHHHHHhC-CcEEEEecCCCC----CCHHHHHHHHHH
Confidence            33333332 234566666554    789999987765

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.70  E-value=7.7e-16  Score=123.86  Aligned_cols=116  Identities=15%  Similarity=0.145  Sum_probs=78.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCccccc-----------------------------CCCCCcceeeEEEEEEeeCCcEE
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSK-----------------------------AGSSGVTKTCEMQRTMLKDGQVV   71 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~-----------------------------~~~~~~T~~~~~~~~~~~~~~~~   71 (259)
                      +|+++|++|+|||||+++|+........                             ....+.|.+.....+. .++..+
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFS-TPKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEe-cCCceE
Confidence            5899999999999999999765422110                             0013556665555554 467799


Q ss_pred             EEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985           72 NVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE  151 (259)
Q Consensus        72 ~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~  151 (259)
                      .||||||+.           .+...+..+...+|++|+|+|++.+....+...+..+.. .+.   .++++|+||+|+..
T Consensus        80 ~liDTpG~~-----------~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~---~~iIvviNK~D~~~  144 (208)
T cd04166          80 IIADTPGHE-----------QYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGI---RHVVVAVNKMDLVD  144 (208)
T ss_pred             EEEECCcHH-----------HHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCC---CcEEEEEEchhccc
Confidence            999999953           222222334567899999999987776666555554443 332   36788999999875


Q ss_pred             C
Q 024985          152 D  152 (259)
Q Consensus       152 ~  152 (259)
                      .
T Consensus       145 ~  145 (208)
T cd04166         145 Y  145 (208)
T ss_pred             C
Confidence            3

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.70  E-value=5.2e-16  Score=114.78  Aligned_cols=121  Identities=15%  Similarity=0.142  Sum_probs=81.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      -.++|+++|.+|+|||||+-++.....-+-...+.++...+....+. .....+.||||+|-           +.+....
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vd-g~~~KlaiWDTAGq-----------ErFRtLT   77 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVD-GKRLKLAIWDTAGQ-----------ERFRTLT   77 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEc-CceEEEEEEeccch-----------HhhhccC
Confidence            34899999999999999999998766522222234555555554433 33458999999993           4666666


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELE  151 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~  151 (259)
                      ..+++++.++|+|+|++.+-+... ..|++.+.- +.....--.++|.||+|.-.
T Consensus        78 pSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~-Ystn~diikmlVgNKiDkes  131 (209)
T KOG0080|consen   78 PSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDL-YSTNPDIIKMLVGNKIDKES  131 (209)
T ss_pred             HhHhccCceeEEEEEccchhhHHhHHHHHHHHHh-hcCCccHhHhhhcccccchh
Confidence            778999999999999985544332 234444433 22222224578999999653

>cd04133 Rop_like Rop subfamily

Probab=99.70  E-value=1.5e-15  Score=118.92  Aligned_cols=164  Identities=18%  Similarity=0.123  Sum_probs=99.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEE-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM-QRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~-~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      .+|+++|.+|+|||||+.++...... ...  . .|....+ ..+. .++  ..+.+|||+|...           +...
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~-~~~--~-~Ti~~~~~~~~~-~~~~~v~l~i~Dt~G~~~-----------~~~~   65 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFP-TDY--I-PTVFDNFSANVS-VDGNTVNLGLWDTAGQED-----------YNRL   65 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCC-CCC--C-CcceeeeEEEEE-ECCEEEEEEEEECCCCcc-----------cccc
Confidence            47999999999999999999977642 211  1 1211111 1122 233  4789999999542           2222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccH-Hhh-hCCCCCchHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETL-EDY-LGPECPKPLKEI  172 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~-~~~-~~~~~~~~l~~~  172 (259)
                      ....+.++|++|+|+|.+++-+....  .|+..+.... .  ..|+++|.||+|+.+.. ... .+. ...-..+..+.+
T Consensus        66 ~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgnK~Dl~~~~-~~~~~~~~~~~v~~~~~~~~  141 (176)
T cd04133          66 RPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-P--NVPIVLVGTKLDLRDDK-QYLADHPGASPITTAQGEEL  141 (176)
T ss_pred             chhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEeChhhccCh-hhhhhccCCCCCCHHHHHHH
Confidence            33456788999999999866555542  4666665532 2  35999999999986431 000 000 000012233444


Q ss_pred             HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      .+..+. ..+|..++.++    .++.+++..+.+.+
T Consensus       142 a~~~~~-~~~~E~SAk~~----~nV~~~F~~~~~~~  172 (176)
T cd04133         142 RKQIGA-AAYIECSSKTQ----QNVKAVFDAAIKVV  172 (176)
T ss_pred             HHHcCC-CEEEECCCCcc----cCHHHHHHHHHHHH
Confidence            554432 23566666655    78999999888765

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04155 Arl3 Arl3 subfamily

Probab=99.70  E-value=5.6e-16  Score=120.82  Aligned_cols=160  Identities=16%  Similarity=0.129  Sum_probs=89.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+|+++|++|||||||+++|.+......     ..|.......+. ..+..+.+|||||..           .+...
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~-~~~~~~~~~D~~G~~-----------~~~~~   74 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQ-SDGFKLNVWDIGGQR-----------AIRPY   74 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEE-ECCEEEEEEECCCCH-----------HHHHH
Confidence            3468999999999999999999998754211     112222222333 457789999999953           22222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ....+..+|++++|+|+.+.-+... ...+..+.... .....|+++++||+|....  ...+++...     +. +...
T Consensus        75 ~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~--~~~~~i~~~-----l~-~~~~  145 (173)
T cd04155          75 WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLATA--APAEEIAEA-----LN-LHDL  145 (173)
T ss_pred             HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCccC--CCHHHHHHH-----cC-Cccc
Confidence            3334567799999999973221111 12222221111 1123599999999998654  223222210     00 0000


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      ....+.++..++.++    .|+.+++++|.+
T Consensus       146 ~~~~~~~~~~Sa~~~----~gi~~~~~~l~~  172 (173)
T cd04155         146 RDRTWHIQACSAKTG----EGLQEGMNWVCK  172 (173)
T ss_pred             CCCeEEEEEeECCCC----CCHHHHHHHHhc
Confidence            011122344444443    789999988753

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd00876 Ras Ras family

Probab=99.70  E-value=1.6e-15  Score=116.38  Aligned_cols=155  Identities=14%  Similarity=0.121  Sum_probs=89.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      +|+++|++|||||||++++++... ....  .+++......... ..  ...+.+||+||...           +.....
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~--~~~~~~~~~~~~~-~~~~~~~~~l~D~~g~~~-----------~~~~~~   65 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTF-VEEY--DPTIEDSYRKTIV-VDGETYTLDILDTAGQEE-----------FSAMRD   65 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCC-CcCc--CCChhHeEEEEEE-ECCEEEEEEEEECCChHH-----------HHHHHH
Confidence            589999999999999999998763 2221  2222222222222 23  24788999999542           111222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      .....+|++++|+|.++.-+..+ ..++..+..... ....|+++|+||+|........         ......+....+
T Consensus        66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~---------~~~~~~~~~~~~  135 (160)
T cd00876          66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLENERQVS---------KEEGKALAKEWG  135 (160)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccccceec---------HHHHHHHHHHcC
Confidence            23446799999999984332222 334444444332 1235999999999987531111         112333444444


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      ..+  +..++..+    .++.++++.|..
T Consensus       136 ~~~--~~~S~~~~----~~i~~l~~~l~~  158 (160)
T cd00876         136 CPF--IETSAKDN----INIDEVFKLLVR  158 (160)
T ss_pred             CcE--EEeccCCC----CCHHHHHHHHHh
Confidence            333  33333332    689999988765

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.70  E-value=2.6e-15  Score=122.11  Aligned_cols=168  Identities=14%  Similarity=0.062  Sum_probs=101.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ...+|+++|.+|||||||++.+++..... ..   ..|....+. .+. .++  ..+.||||||-.           .+.
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~-~y---~pTi~~~~~~~i~-~~~~~v~l~iwDTaG~e-----------~~~   75 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPE-TY---VPTVFENYTAGLE-TEEQRVELSLWDTSGSP-----------YYD   75 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCC-Cc---CCceeeeeEEEEE-ECCEEEEEEEEeCCCch-----------hhH
Confidence            45799999999999999999998776421 11   112111111 122 233  479999999942           233


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC----CCCCch
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG----PECPKP  168 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~----~~~~~~  168 (259)
                      .....++.++|++|+|+|++++-+...  ..|+..+.....   ..|+++|.||+|+.... ..+.+...    .-....
T Consensus        76 ~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~-~~~~~l~~~~~~~Vs~~e  151 (232)
T cd04174          76 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLRTDL-STLMELSNQKQAPISYEQ  151 (232)
T ss_pred             HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccccccc-chhhhhccccCCcCCHHH
Confidence            333456788999999999986655443  355666655332   34999999999975321 11111100    011223


Q ss_pred             HHHHHHHcCCcEEEEeCCCcccccchh-HHHHHHHHHHHHHHH
Q 024985          169 LKEILQLCENRRVLFDNKTKDAATRTE-QVGKLISLVNSVILE  210 (259)
Q Consensus       169 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~eLl~~i~~~~~~  210 (259)
                      .+.+.+..+.. .+|..++.++    . ++.+++..+...+.+
T Consensus       152 ~~~~a~~~~~~-~~~EtSAktg----~~~V~e~F~~~~~~~~~  189 (232)
T cd04174         152 GCALAKQLGAE-VYLECSAFTS----EKSIHSIFRSASLLCLN  189 (232)
T ss_pred             HHHHHHHcCCC-EEEEccCCcC----CcCHHHHHHHHHHHHHH
Confidence            45556655532 3456665543    4 699999987766543

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.70  E-value=2.9e-16  Score=128.64  Aligned_cols=163  Identities=17%  Similarity=0.155  Sum_probs=109.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      ..|.|||-||+|||||+|+|.....  .-..+..+|-.+.+..+.+.+...+.+-|.||+......+..+...+.+++..
T Consensus       197 advGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence            4688999999999999999998875  22334556666666655433334699999999998877777788888888877


Q ss_pred             cCCCccEEEEEEeCCCC--CCH-hHHHHHH-HHHHHhccc-ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985          100 AKDGIHAVLLVFSVRNR--FSE-EGGAAIH-SLESLFGKK-VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~--~~~-~~~~~l~-~l~~~~~~~-~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      +    +.++||+|++..  .++ +....|. .+.- +.+. ..+|.+||.||+|..+.            ....++.+.+
T Consensus       275 ~----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~-yek~L~~rp~liVaNKiD~~ea------------e~~~l~~L~~  337 (366)
T KOG1489|consen  275 C----KGLLFVVDLSGKQLRNPWQQLQLLIEELEL-YEKGLADRPALIVANKIDLPEA------------EKNLLSSLAK  337 (366)
T ss_pred             h----ceEEEEEECCCcccCCHHHHHHHHHHHHHH-HhhhhccCceEEEEeccCchhH------------HHHHHHHHHH
Confidence            7    899999999844  122 2333322 2322 2222 44689999999997533            1223456666


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      ...+. .+|.-++..    .+++.+|+..+..
T Consensus       338 ~lq~~-~V~pvsA~~----~egl~~ll~~lr~  364 (366)
T KOG1489|consen  338 RLQNP-HVVPVSAKS----GEGLEELLNGLRE  364 (366)
T ss_pred             HcCCC-cEEEeeecc----ccchHHHHHHHhh
Confidence            66654 233333332    2788888887654

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=9.8e-16  Score=117.08  Aligned_cols=164  Identities=13%  Similarity=0.145  Sum_probs=108.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|..+|||||||+.++-......-..+.|........  . ..+  .++.+|||+|           .+.+..
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~--~-l~d~~vrLQlWDTAG-----------QERFrs   86 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTM--Y-LEDRTVRLQLWDTAG-----------QERFRS   86 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEE--E-EcCcEEEEEEEeccc-----------HHHHhh
Confidence            45899999999999999999998555422211222322222222  1 333  3789999999           457888


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .+..+++++.++|+|+|++++-+.+. ..|++-+....|.+ ...+++|.||.|+.+...-+.+         .-....+
T Consensus        87 lipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~-~viI~LVGnKtDL~dkrqvs~e---------Eg~~kAk  156 (221)
T KOG0094|consen   87 LIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD-DVIIFLVGNKTDLSDKRQVSIE---------EGERKAK  156 (221)
T ss_pred             hhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCC-ceEEEEEcccccccchhhhhHH---------HHHHHHH
Confidence            88889999999999999996655543 56777666655543 1378899999999866211111         1113344


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      ..+.  .+...++..+    .++.+|+..|...+++.
T Consensus       157 el~a--~f~etsak~g----~NVk~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  157 ELNA--EFIETSAKAG----ENVKQLFRRIAAALPGM  187 (221)
T ss_pred             HhCc--EEEEecccCC----CCHHHHHHHHHHhccCc
Confidence            4444  3444444444    68999999999888764

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.69  E-value=3.6e-16  Score=119.50  Aligned_cols=113  Identities=22%  Similarity=0.187  Sum_probs=69.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcC
Q 024985           22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAK  101 (259)
Q Consensus        22 I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~  101 (259)
                      |+++|++|||||||+|+|.+.......    ..|.......+. .++..+.+|||||...           +.......+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~-~~~~~~~~~D~~g~~~-----------~~~~~~~~~   65 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDT----IPTVGFNMRKVT-KGNVTLKVWDLGGQPR-----------FRSMWERYC   65 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCc----cCCCCcceEEEE-ECCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence            789999999999999999998652221    122222223333 3457899999999532           222223345


Q ss_pred             CCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCC
Q 024985          102 DGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELED  152 (259)
Q Consensus       102 ~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~  152 (259)
                      ..+|++++|+|++...+..  ....++......  ....|+++|+||+|....
T Consensus        66 ~~~d~ii~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  116 (159)
T cd04159          66 RGVNAIVYVVDAADRTALE--AAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA  116 (159)
T ss_pred             hcCCEEEEEEECCCHHHHH--HHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence            5679999999997322211  111222222111  123499999999997654

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.69  E-value=1e-15  Score=140.46  Aligned_cols=164  Identities=18%  Similarity=0.247  Sum_probs=107.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCccc-ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFK-SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~-~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      .|+++|.+++|||||+++|+|...-. ......+.|....+......++..+.||||||..           .+...+..
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-----------~fi~~m~~   70 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-----------KFLSNMLA   70 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-----------HHHHHHHH
Confidence            58999999999999999999854211 1112246676665554443456789999999942           33344444


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN-  178 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  178 (259)
                      ...++|++++|+|++.++.+++.+.+..+.. ++.   .+++||+||+|+.+.  ..++....     .++..+...+. 
T Consensus        71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~-lgi---~~iIVVlNKiDlv~~--~~~~~v~~-----ei~~~l~~~~~~  139 (614)
T PRK10512         71 GVGGIDHALLVVACDDGVMAQTREHLAILQL-TGN---PMLTVALTKADRVDE--ARIAEVRR-----QVKAVLREYGFA  139 (614)
T ss_pred             HhhcCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCccCCH--HHHHHHHH-----HHHHHHHhcCCC
Confidence            5667899999999998888888888877655 443   246899999998754  33332222     34444444332 


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ...+|..++..+    .|+.+|++.|.++...
T Consensus       140 ~~~ii~VSA~tG----~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        140 EAKLFVTAATEG----RGIDALREHLLQLPER  167 (614)
T ss_pred             CCcEEEEeCCCC----CCCHHHHHHHHHhhcc
Confidence            122333333333    7899999999887543

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.69  E-value=6.2e-16  Score=128.15  Aligned_cols=170  Identities=19%  Similarity=0.168  Sum_probs=116.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      -|.+||-||+|||||+++++....  ....++.+|..+....+....+..|++-|.||+.........+..++.+++..+
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkP--KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKP--KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCC--cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            367999999999999999998875  334455666666666555445678999999999988777777888888888877


Q ss_pred             CCCccEEEEEEeCCCC--CC-HhHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985          101 KDGIHAVLLVFSVRNR--FS-EEGG-AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~--~~-~~~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                          .++++|+|++..  .. .++. .+...|...-..=..+|.+||+||+|...+. +.++.        ..+.+.+.+
T Consensus       239 ----~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~-e~~~~--------~~~~l~~~~  305 (369)
T COG0536         239 ----RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE-EELEE--------LKKALAEAL  305 (369)
T ss_pred             ----heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH-HHHHH--------HHHHHHHhc
Confidence                799999999721  11 2333 3333444422222457999999999966441 22222        233555555


Q ss_pred             CCcEEE-EeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          177 ENRRVL-FDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       177 ~~~~~~-~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      +..... ++..      .++++.+|+..+.+++...
T Consensus       306 ~~~~~~~ISa~------t~~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         306 GWEVFYLISAL------TREGLDELLRALAELLEET  335 (369)
T ss_pred             CCCcceeeehh------cccCHHHHHHHHHHHHHHh
Confidence            654443 3332      2378999999998888764

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.69  E-value=3.6e-15  Score=119.02  Aligned_cols=173  Identities=13%  Similarity=0.096  Sum_probs=99.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe----eCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML----KDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~----~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      +|+++|.+|||||||++.+++.........+.+.+.......+..    .....+.||||+|-.           .+...
T Consensus         2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e-----------~~~~l   70 (202)
T cd04102           2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE-----------SVKST   70 (202)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch-----------hHHHH
Confidence            799999999999999999998765322111122222112111110    012368999999943           33334


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhc-----------------ccccCeEEEEEeCCCCCCCCcccHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFG-----------------KKVFDYMIVVFTGGNELEDNDETLE  158 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~-----------------~~~~~~~ivV~nk~D~~~~~~~~~~  158 (259)
                      ....+.++|++|+|+|++++-+... ..|+..+....+                 .....|++||.||.|+.......-+
T Consensus        71 ~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~  150 (202)
T cd04102          71 RAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGN  150 (202)
T ss_pred             HHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchH
Confidence            4456778999999999986644443 345555543211                 0123499999999998653101111


Q ss_pred             hhhCCCCCchHHHHHHHcCCcEEEEeCCCccc-ccchhHHHHHHHHHHHHHH
Q 024985          159 DYLGPECPKPLKEILQLCENRRVLFDNKTKDA-ATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~eLl~~i~~~~~  209 (259)
                      ..     ......+.++++......+...... +....+...|.+.....+.
T Consensus       151 ~~-----~~~~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  197 (202)
T cd04102         151 LV-----LTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIE  197 (202)
T ss_pred             HH-----hhHhhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHH
Confidence            00     1134466777887766655543221 1223455556555555554

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.69  E-value=1.5e-15  Score=121.36  Aligned_cols=159  Identities=18%  Similarity=0.170  Sum_probs=90.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      +|+++|.+|||||||++++++...... .  .+++.......+. ..+  ..+.+|||||....           .....
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~-~--~~t~~~~~~~~~~-~~~~~~~l~i~D~~G~~~~-----------~~~~~   65 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPK-Y--RRTVEEMHRKEYE-VGGVSLTLDILDTSGSYSF-----------PAMRK   65 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcc-C--CCchhhheeEEEE-ECCEEEEEEEEECCCchhh-----------hHHHH
Confidence            589999999999999999998764221 1  1111111111222 334  47889999996431           11222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH-Hc
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ-LC  176 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~-~~  176 (259)
                      ..+..+|++|+|+|+++..+... ..++..+.+... ....|+++|+||+|+.... ..+.       ......... ..
T Consensus        66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~-~~v~-------~~~~~~~~~~~~  136 (198)
T cd04147          66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEEE-RQVP-------AKDALSTVELDW  136 (198)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccccc-cccc-------HHHHHHHHHhhc
Confidence            34567899999999984433332 233344444322 2235999999999986531 1110       001111111 11


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      +..  ++..++..+    .|+.+|++.+.+.+.
T Consensus       137 ~~~--~~~~Sa~~g----~gv~~l~~~l~~~~~  163 (198)
T cd04147         137 NCG--FVETSAKDN----ENVLEVFKELLRQAN  163 (198)
T ss_pred             CCc--EEEecCCCC----CCHHHHHHHHHHHhh
Confidence            222  333333333    799999999887665

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01892 Miro2 Miro2 subfamily

Probab=99.69  E-value=2.3e-15  Score=117.21  Aligned_cols=161  Identities=12%  Similarity=0.021  Sum_probs=91.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      +..+|+++|.+|||||||++++++........ .+..........+. .++  ..+.+|||+|.....           .
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~-~~T~~~~~~~~~~~-~~~~~~~l~~~d~~g~~~~~-----------~   69 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAY-SPTIKPRYAVNTVE-VYGQEKYLILREVGEDEVAI-----------L   69 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccC-CCccCcceEEEEEE-ECCeEEEEEEEecCCccccc-----------c
Confidence            45799999999999999999999877520111 11111112212222 233  468899999954321           1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      .....+..+|++|+|+|++++.+..  .+.+++.. +......|+++|+||+|+.+..  ..       ......++.+.
T Consensus        70 ~~~~~~~~~d~~llv~d~~~~~s~~--~~~~~~~~-~~~~~~~p~iiv~NK~Dl~~~~--~~-------~~~~~~~~~~~  137 (169)
T cd01892          70 LNDAELAACDVACLVYDSSDPKSFS--YCAEVYKK-YFMLGEIPCLFVAAKADLDEQQ--QR-------YEVQPDEFCRK  137 (169)
T ss_pred             cchhhhhcCCEEEEEEeCCCHHHHH--HHHHHHHH-hccCCCCeEEEEEEcccccccc--cc-------cccCHHHHHHH
Confidence            1122346789999999997442211  22233332 2111235999999999986431  10       01123344444


Q ss_pred             cCC-cEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          176 CEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       176 ~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .+. .++.+++..  +    .++.+|++.+.+.+.
T Consensus       138 ~~~~~~~~~Sa~~--~----~~v~~lf~~l~~~~~  166 (169)
T cd01892         138 LGLPPPLHFSSKL--G----DSSNELFTKLATAAQ  166 (169)
T ss_pred             cCCCCCEEEEecc--C----ccHHHHHHHHHHHhh
Confidence            443 233444332  2    689999998877653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01875 RhoG RhoG subfamily

Probab=99.69  E-value=3.4e-15  Score=118.57  Aligned_cols=167  Identities=16%  Similarity=0.082  Sum_probs=98.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ..+|+++|.+|||||||++.+....... ..   ..|....+. .+. .++  ..+.+|||||-.           .+..
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~-~~---~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~e-----------~~~~   66 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPK-EY---IPTVFDNYSAQTA-VDGRTVSLNLWDTAGQE-----------EYDR   66 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCc-CC---CCceEeeeEEEEE-ECCEEEEEEEEECCCch-----------hhhh
Confidence            4789999999999999999998765421 11   112211111 111 233  478999999943           2333


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC----CCCchH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP----ECPKPL  169 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~----~~~~~l  169 (259)
                      .....+.++|++|+|+|++++-+....  .++..+.... .  ..|+++|.||.|+.+.. ...+.+...    ......
T Consensus        67 l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~  142 (191)
T cd01875          67 LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-P--NVPILLVGTKKDLRNDA-DTLKKLKEQGQAPITPQQG  142 (191)
T ss_pred             hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEEeChhhhcCh-hhHHHHhhccCCCCCHHHH
Confidence            334467789999999999855444432  2444444322 2  35999999999986431 111111110    011123


Q ss_pred             HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +.+.+..+. ..+|..++..+    .++.+++..+.+.+..
T Consensus       143 ~~~a~~~~~-~~~~e~SAk~g----~~v~e~f~~l~~~~~~  178 (191)
T cd01875         143 GALAKQIHA-VKYLECSALNQ----DGVKEVFAEAVRAVLN  178 (191)
T ss_pred             HHHHHHcCC-cEEEEeCCCCC----CCHHHHHHHHHHHHhc
Confidence            344444332 33556665554    7899999988776643

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.68  E-value=2.8e-15  Score=117.98  Aligned_cols=165  Identities=14%  Similarity=0.069  Sum_probs=99.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ...+|+++|.+|+|||||++++....... ..   ..|....+. .+. .++  ..+.+|||+|-.           .+.
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~-~~---~pT~~~~~~~~~~-~~~~~~~l~iwDtaG~e-----------~~~   67 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPE-NY---VPTVFENYTASFE-IDTQRIELSLWDTSGSP-----------YYD   67 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCC-cc---CCceeeeeEEEEE-ECCEEEEEEEEECCCch-----------hhH
Confidence            45799999999999999999998776422 11   112211111 122 233  478999999942           233


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC----CCCCch
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG----PECPKP  168 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~----~~~~~~  168 (259)
                      ......+.++|++|+|+|++++.+...  ..|++.+.+.. .  ..|+++|.||+|+.... ..+.+...    .-....
T Consensus        68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-~--~~piilVgNK~DL~~~~-~~~~~~~~~~~~~v~~~~  143 (182)
T cd04172          68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-P--NTKMLLVGCKSDLRTDL-TTLVELSNHRQTPVSYDQ  143 (182)
T ss_pred             hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-C--CCCEEEEeEChhhhcCh-hhHHHHHhcCCCCCCHHH
Confidence            333456788999999999986655444  35666666543 2  35999999999975321 11111100    011223


Q ss_pred             HHHHHHHcCCcEEEEeCCCcccccchhH-HHHHHHHHHHH
Q 024985          169 LKEILQLCENRRVLFDNKTKDAATRTEQ-VGKLISLVNSV  207 (259)
Q Consensus       169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~eLl~~i~~~  207 (259)
                      ..++.+..+. ..++..++..+    .+ +.+++..+...
T Consensus       144 ~~~~a~~~~~-~~~~E~SAk~~----~n~v~~~F~~~~~~  178 (182)
T cd04172         144 GANMAKQIGA-ATYIECSALQS----ENSVRDIFHVATLA  178 (182)
T ss_pred             HHHHHHHcCC-CEEEECCcCCC----CCCHHHHHHHHHHH
Confidence            4555555543 23556665554    66 99998876653

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.68  E-value=4.1e-16  Score=138.46  Aligned_cols=120  Identities=18%  Similarity=0.243  Sum_probs=84.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccc--------------c---------------CCCCCcceeeEEEEEEee
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKS--------------K---------------AGSSGVTKTCEMQRTMLK   66 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~--------------~---------------~~~~~~T~~~~~~~~~~~   66 (259)
                      .++..+|+++|++++|||||+++|+.......              +               ....+.|.+.....+. .
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~-~   81 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE-T   81 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe-c
Confidence            45678999999999999999999984432111              0               0135677777776665 4


Q ss_pred             CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCC--CCCHhHHHHHHHHHHHhcccccCeEEEEE
Q 024985           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRN--RFSEEGGAAIHSLESLFGKKVFDYMIVVF  144 (259)
Q Consensus        67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivV~  144 (259)
                      ++..+.||||||..+.           ...+......+|++|+|+|++.  ++...+.+.+..+.. ++.   .+++||+
T Consensus        82 ~~~~i~liDtpG~~~~-----------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivvi  146 (425)
T PRK12317         82 DKYYFTIVDCPGHRDF-----------VKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVAI  146 (425)
T ss_pred             CCeEEEEEECCCcccc-----------hhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEEE
Confidence            6789999999996431           1112223457899999999986  566666666665544 342   3799999


Q ss_pred             eCCCCCC
Q 024985          145 TGGNELE  151 (259)
Q Consensus       145 nk~D~~~  151 (259)
                      ||+|+..
T Consensus       147 NK~Dl~~  153 (425)
T PRK12317        147 NKMDAVN  153 (425)
T ss_pred             Ecccccc
Confidence            9999875

>cd04177 RSR1 RSR1 subgroup

Probab=99.68  E-value=2.8e-15  Score=116.45  Aligned_cols=158  Identities=16%  Similarity=0.132  Sum_probs=89.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|.+|||||||++++.+..... ...  +++...-..... .++  ..+.+|||||....           ....
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~-~~~--~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~-----------~~~~   66 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIE-SYD--PTIEDSYRKQVE-IDGRQCDLEILDTAGTEQF-----------TAMR   66 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCc-ccC--CcchheEEEEEE-ECCEEEEEEEEeCCCcccc-----------hhhh
Confidence            589999999999999999999776422 111  111111111111 222  47889999996532           1222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+..++++++|+|.+++-+... ..+...+.+... ....|+++|+||+|+........         .....+.+..
T Consensus        67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~~~~~~~---------~~~~~~~~~~  136 (168)
T cd04177          67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDDRQVSR---------EDGVSLSQQW  136 (168)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhccccCccCH---------HHHHHHHHHc
Confidence            233456799999999984433222 234444444322 22359999999999865411111         1122333443


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      +. ..++..++..+    .++.++++.+...
T Consensus       137 ~~-~~~~~~SA~~~----~~i~~~f~~i~~~  162 (168)
T cd04177         137 GN-VPFYETSARKR----TNVDEVFIDLVRQ  162 (168)
T ss_pred             CC-ceEEEeeCCCC----CCHHHHHHHHHHH
Confidence            31 23445554433    7888888887653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.68  E-value=3.4e-15  Score=117.25  Aligned_cols=161  Identities=18%  Similarity=0.176  Sum_probs=92.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|.+|+|||||++++++.......   .+++......... ..+  ..+.+|||||...           +....
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~~~~l~D~~g~~~-----------~~~~~   66 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY---YPTIENTFSKIIR-YKGQDYHLEIVDTAGQDE-----------YSILP   66 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcccc---CcchhhhEEEEEE-ECCEEEEEEEEECCChHh-----------hHHHH
Confidence            58999999999999999999977642211   1222111111122 233  3578999999542           11222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+..+|++++|+|.++..+... ..++..+.+..+ ....|+++|+||+|+...  ....       ......+.+..
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~--~~~~-------~~~~~~~~~~~  136 (180)
T cd04137          67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHTQ--RQVS-------TEEGKELAESW  136 (180)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhhc--CccC-------HHHHHHHHHHc
Confidence            234456799999999985433322 233344433222 123499999999998643  1111       11233344444


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      +..+  +..++..+    .++.+++..+.+.+...
T Consensus       137 ~~~~--~~~Sa~~~----~gv~~l~~~l~~~~~~~  165 (180)
T cd04137         137 GAAF--LESSAREN----ENVEEAFELLIEEIEKV  165 (180)
T ss_pred             CCeE--EEEeCCCC----CCHHHHHHHHHHHHHHh
Confidence            4333  33343333    68999999888776554

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.68  E-value=7.8e-16  Score=125.97  Aligned_cols=137  Identities=18%  Similarity=0.200  Sum_probs=89.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCccccc----------------CCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSK----------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA   84 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~   84 (259)
                      +|+++|++|+|||||+++|+........                ....+.|.......+. ..+..+.+|||||..+.  
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~-~~~~~i~liDTPG~~~f--   77 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQ-WEDTKVNLIDTPGHMDF--   77 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEE-ECCEEEEEEeCCCccch--
Confidence            5899999999999999999754321110                0011223333333344 46779999999997642  


Q ss_pred             ChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCC
Q 024985           85 DSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPE  164 (259)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~  164 (259)
                           ...+..    +...+|++++|+|+..+.......+++.+.. .+    .|+++|+||+|+...           .
T Consensus        78 -----~~~~~~----~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~-~~----~P~iivvNK~D~~~a-----------~  132 (237)
T cd04168          78 -----IAEVER----SLSVLDGAILVISAVEGVQAQTRILWRLLRK-LN----IPTIIFVNKIDRAGA-----------D  132 (237)
T ss_pred             -----HHHHHH----HHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECccccCC-----------C
Confidence                 122222    3345699999999987777777777776655 34    399999999998754           1


Q ss_pred             CCchHHHHHHHcCCcEEEEeC
Q 024985          165 CPKPLKEILQLCENRRVLFDN  185 (259)
Q Consensus       165 ~~~~l~~~~~~~~~~~~~~~~  185 (259)
                      ....+..+...++.+++.++.
T Consensus       133 ~~~~~~~i~~~~~~~~~~~~~  153 (237)
T cd04168         133 LEKVYQEIKEKLSSDIVPMQK  153 (237)
T ss_pred             HHHHHHHHHHHHCCCeEEEEC
Confidence            223455666667766665544

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04131 Rnd Rnd subfamily

Probab=99.68  E-value=3.2e-15  Score=117.34  Aligned_cols=163  Identities=14%  Similarity=0.053  Sum_probs=97.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      .+|+++|.+|||||||++++.+.... ...  . .|....+. .+. .++  ..+.+|||||..           .+...
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~-~~~--~-~t~~~~~~~~~~-~~~~~~~l~iwDt~G~~-----------~~~~~   65 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYP-ETY--V-PTVFENYTASFE-IDEQRIELSLWDTSGSP-----------YYDNV   65 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCC-CCc--C-CceEEEEEEEEE-ECCEEEEEEEEECCCch-----------hhhhc
Confidence            58999999999999999999987642 111  1 12111111 122 233  478899999943           22223


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC----CCCCchHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG----PECPKPLK  170 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~----~~~~~~l~  170 (259)
                      ....+.++|++|+|+|++++-+...  ..|+..+.+...   ..|+++|.||+|+.+.. ....++-.    .-......
T Consensus        66 ~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~~~-~~~~~~~~~~~~~v~~~e~~  141 (178)
T cd04131          66 RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRTDL-STLMELSHQRQAPVSYEQGC  141 (178)
T ss_pred             chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhcCh-hHHHHHHhcCCCCCCHHHHH
Confidence            3446778999999999986655544  345666655432   35999999999985421 11111100    00122344


Q ss_pred             HHHHHcCCcEEEEeCCCcccccchh-HHHHHHHHHHHH
Q 024985          171 EILQLCENRRVLFDNKTKDAATRTE-QVGKLISLVNSV  207 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~-~i~eLl~~i~~~  207 (259)
                      ++.+..+. ..+|..++.++    . ++.+++..+...
T Consensus       142 ~~a~~~~~-~~~~E~SA~~~----~~~v~~~F~~~~~~  174 (178)
T cd04131         142 AIAKQLGA-EIYLECSAFTS----EKSVRDIFHVATMA  174 (178)
T ss_pred             HHHHHhCC-CEEEECccCcC----CcCHHHHHHHHHHH
Confidence            55555443 23466665544    5 499998877663

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.68  E-value=1.8e-15  Score=132.93  Aligned_cols=171  Identities=16%  Similarity=0.200  Sum_probs=106.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCC------ccc--------ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRR------AFK--------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~------~~~--------~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~   81 (259)
                      +.+..+|+++|++++|||||+++|++..      .+.        ......+.|.......+. .++..+.|+||||.. 
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~-~~~~~i~~iDtPGh~-   86 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE-TANRHYAHVDCPGHA-   86 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEc-CCCcEEEEEECCCHH-
Confidence            4567899999999999999999998621      000        001134566665544443 356689999999952 


Q ss_pred             CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeE-EEEEeCCCCCCCCcccHHhh
Q 024985           82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYM-IVVFTGGNELEDNDETLEDY  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~-ivV~nk~D~~~~~~~~~~~~  160 (259)
                                .+...+......+|++++|+|+..+....+.+.+..+.. .+.    |. ++|+||+|+.+.  +...+.
T Consensus        87 ----------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~gi----~~iivvvNK~Dl~~~--~~~~~~  149 (396)
T PRK12735         87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV----PYIVVFLNKCDMVDD--EELLEL  149 (396)
T ss_pred             ----------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEEEecCCcch--HHHHHH
Confidence                      333444445567899999999987777777777776654 443    64 468999998753  233222


Q ss_pred             hCCCCCchHHHHHHHcCC---cEEEEeCCCcccc------cchhHHHHHHHHHHHHHH
Q 024985          161 LGPECPKPLKEILQLCEN---RRVLFDNKTKDAA------TRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       161 ~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~------~~~~~i~eLl~~i~~~~~  209 (259)
                      +.    ..++.++..++.   .+.++..++..+.      ....++.+|++.+...++
T Consensus       150 ~~----~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        150 VE----MEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HH----HHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            22    145556665542   2333333332210      112367888888888764

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.68  E-value=3.8e-15  Score=116.51  Aligned_cols=163  Identities=15%  Similarity=0.013  Sum_probs=94.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|.+|||||||+.+++...... ..  .++........+. .++  ..+.+|||||...           +....
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~-~~--~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~~~   66 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPG-EY--IPTVFDNYSANVM-VDGKPVNLGLWDTAGQED-----------YDRLR   66 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCC-cC--CCcceeeeEEEEE-ECCEEEEEEEEECCCchh-----------hhhhh
Confidence            589999999999999999998765421 11  1111111111122 233  4788999999532           22222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC----CCCchHHH
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP----ECPKPLKE  171 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~----~~~~~l~~  171 (259)
                      ...+.++|++|+|+|++++-+....  .++..+....   ...|+++|.||+|+.... .+.+.....    -.......
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~  142 (174)
T cd01871          67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQGLA  142 (174)
T ss_pred             hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhccCh-hhHHHHhhccCCCCCHHHHHH
Confidence            3356788999999999854443332  3455554422   135999999999985431 222211110    01122334


Q ss_pred             HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      +.+..+. ..+|..++..+    .++.++++.+..
T Consensus       143 ~~~~~~~-~~~~e~Sa~~~----~~i~~~f~~l~~  172 (174)
T cd01871         143 MAKEIGA-VKYLECSALTQ----KGLKTVFDEAIR  172 (174)
T ss_pred             HHHHcCC-cEEEEeccccc----CCHHHHHHHHHH
Confidence            4444432 34556665554    789999987764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.68  E-value=2e-15  Score=124.37  Aligned_cols=160  Identities=16%  Similarity=0.127  Sum_probs=92.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|.+|||||||++++++..... .  ..+++.+.....+. .++  ..+.||||||....           ....
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~-~--y~pTi~d~~~k~~~-i~~~~~~l~I~Dt~G~~~~-----------~~~~   65 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEE-Q--YTPTIEDFHRKLYS-IRGEVYQLDILDTSGNHPF-----------PAMR   65 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCC-C--CCCChhHhEEEEEE-ECCEEEEEEEEECCCChhh-----------hHHH
Confidence            379999999999999999998776422 1  11222111111122 334  46889999995421           1111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHh-------cccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchH
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLF-------GKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPL  169 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~-------~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l  169 (259)
                      ..++..+|++|+|+|++++-+... ..+++.+....       ......|+++|+||+|+........         ..+
T Consensus        66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~---------~ei  136 (247)
T cd04143          66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQR---------DEV  136 (247)
T ss_pred             HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCH---------HHH
Confidence            223457799999999985543332 33444444321       0112459999999999864311111         122


Q ss_pred             HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      .+++... ....++..++..+    .++.+|++.|..+.
T Consensus       137 ~~~~~~~-~~~~~~evSAktg----~gI~elf~~L~~~~  170 (247)
T cd04143         137 EQLVGGD-ENCAYFEVSAKKN----SNLDEMFRALFSLA  170 (247)
T ss_pred             HHHHHhc-CCCEEEEEeCCCC----CCHHHHHHHHHHHh
Confidence            3333221 1223444444433    78999999988765

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=1.6e-15  Score=130.80  Aligned_cols=178  Identities=17%  Similarity=0.126  Sum_probs=110.6

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC-CCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS-SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+.|+++|+||+|||||+|+|.+.+...  +++ +|+|++.....+. .+|.++.++||+|+.....+.  +...=.
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsI--VSpv~GTTRDaiea~v~-~~G~~v~L~DTAGiRe~~~~~--iE~~gI  339 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSI--VSPVPGTTRDAIEAQVT-VNGVPVRLSDTAGIREESNDG--IEALGI  339 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCceE--eCCCCCcchhhheeEee-cCCeEEEEEeccccccccCCh--hHHHhH
Confidence            3456899999999999999999999999733  444 4566666666555 899999999999998722222  111112


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHh-ccc------ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCc
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLF-GKK------VFDYMIVVFTGGNELEDNDETLEDYLGPECPK  167 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~-~~~------~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~  167 (259)
                      .........+|++++|+|+....+..+..+.+.+...- |..      ...++++|.||.|...+-+ ++.   .    .
T Consensus       340 ~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~-~~~---~----~  411 (531)
T KOG1191|consen  340 ERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP-EMT---K----I  411 (531)
T ss_pred             HHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccc-ccc---C----C
Confidence            22233455779999999996566666656555554421 111      2268999999999875410 000   0    0


Q ss_pred             hHHHHHH--HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          168 PLKEILQ--LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       168 ~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      .+...-.  ....+++.+.++     ..+++++.|...+.+.+...
T Consensus       412 ~~~~~~~~~~~~~~i~~~vs~-----~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  412 PVVYPSAEGRSVFPIVVEVSC-----TTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             ceeccccccCcccceEEEeee-----chhhhHHHHHHHHHHHHHHh
Confidence            0000111  011233343333     23489999999887776554

>PRK12736 elongation factor Tu; Reviewed

Probab=99.67  E-value=3.2e-15  Score=131.24  Aligned_cols=171  Identities=15%  Similarity=0.182  Sum_probs=108.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCccc--------------ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFK--------------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~--------------~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~   81 (259)
                      .++..+|+++|+.++|||||+++|++.....              ......+.|.+.....+. .++..+.+|||||.. 
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~-~~~~~i~~iDtPGh~-   86 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE-TEKRHYAHVDCPGHA-   86 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEec-CCCcEEEEEECCCHH-
Confidence            4567899999999999999999998632100              000134566665544433 356689999999942 


Q ss_pred             CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe-EEEEEeCCCCCCCCcccHHhh
Q 024985           82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY-MIVVFTGGNELEDNDETLEDY  160 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~nk~D~~~~~~~~~~~~  160 (259)
                                .+...+......+|++++|+|++.++...+.+.+..+.. .+.    | +++|+||+|+.+.  +.+.+.
T Consensus        87 ----------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~-~g~----~~~IvviNK~D~~~~--~~~~~~  149 (394)
T PRK12736         87 ----------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ-VGV----PYLVVFLNKVDLVDD--EELLEL  149 (394)
T ss_pred             ----------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH-cCC----CEEEEEEEecCCcch--HHHHHH
Confidence                      222333334457799999999987888888888887765 343    5 6789999998744  333332


Q ss_pred             hCCCCCchHHHHHHHcCC-----cEEEEeCCCc--ccccchhHHHHHHHHHHHHHH
Q 024985          161 LGPECPKPLKEILQLCEN-----RRVLFDNKTK--DAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       161 ~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      +.    ..++.++...+.     .++..++...  .......++.+|++.+.+.++
T Consensus       150 i~----~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        150 VE----MEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HH----HHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            22    245555555543     2333333221  111122367888888888765

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.67  E-value=1.2e-15  Score=127.08  Aligned_cols=115  Identities=16%  Similarity=0.201  Sum_probs=80.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccc----------------cCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKS----------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA   84 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~----------------~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~   84 (259)
                      +|+++|++|+|||||+++|+.......                .....+.|.......+. ..+..+++|||||..+.  
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~df--   77 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF-WKDHRINIIDTPGHVDF--   77 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE-ECCEEEEEEECCCcHHH--
Confidence            589999999999999999973221000                01123555555555555 46789999999996531  


Q ss_pred             ChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           85 DSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                           ...+.    .+...+|++++|+|+..+....+..+++.+.. .+    .|+++++||+|+...
T Consensus        78 -----~~~~~----~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~-~~----~p~ivviNK~D~~~a  131 (270)
T cd01886          78 -----TIEVE----RSLRVLDGAVAVFDAVAGVEPQTETVWRQADR-YN----VPRIAFVNKMDRTGA  131 (270)
T ss_pred             -----HHHHH----HHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECCCCCCC
Confidence                 22233    33445699999999987888888778777665 34    399999999998753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.67  E-value=4.8e-15  Score=112.85  Aligned_cols=154  Identities=17%  Similarity=0.190  Sum_probs=86.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|.+|+|||||+|++++.. +... ...+.+.......+. .++  ..+.+|||||.....    ...       
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~G~~~~~----~~~-------   67 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK-FITE-YKPGTTRNYVTTVIE-EDGKTYKFNLLDTAGQEDYR----AIR-------   67 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC-CcCc-CCCCceeeeeEEEEE-ECCEEEEEEEEECCCcccch----HHH-------
Confidence            689999999999999999999888 3322 223344444333233 455  578999999954321    111       


Q ss_pred             hhcCCCccEEEEEEeCCCC-CCH--hHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           98 GMAKDGIHAVLLVFSVRNR-FSE--EGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~-~~~--~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ......++.+++++|.... .+.  ....++..+......  ..|+++|+||+|+...  . .        .......+.
T Consensus        68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~--~-~--------~~~~~~~~~  134 (161)
T TIGR00231        68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA--K-L--------KTHVAFLFA  134 (161)
T ss_pred             HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc--h-h--------hHHHHHHHh
Confidence            1122234666667766522 111  112333444443322  3599999999998754  1 1        112333333


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVN  205 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~  205 (259)
                      ..+... ++..++..+    .++.+++..|.
T Consensus       135 ~~~~~~-~~~~sa~~~----~gv~~~~~~l~  160 (161)
T TIGR00231       135 KLNGEP-IIPLSAETG----KNIDSAFKIVE  160 (161)
T ss_pred             hccCCc-eEEeecCCC----CCHHHHHHHhh
Confidence            333322 333333333    68888888764

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.67  E-value=3.4e-15  Score=136.00  Aligned_cols=116  Identities=16%  Similarity=0.219  Sum_probs=79.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee--C---------------CcEEEEEeCCCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK--D---------------GQVVNVIDTPGLF   80 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--~---------------~~~~~liDTPG~~   80 (259)
                      ..+.|+++|++++|||||+|+|++......  .+.+.|+......+...  .               ...+.||||||..
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~--e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e   80 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKR--EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE   80 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccc--cCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence            357899999999999999999998865222  22334443222222110  0               0248899999953


Q ss_pred             CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985           81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE  151 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~  151 (259)
                      .           +.......+..+|++++|+|++++....+.+.+..+.. .+    .|+++|+||+|+..
T Consensus        81 ~-----------f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~-~~----vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        81 A-----------FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRM-YK----TPFVVAANKIDRIP  135 (590)
T ss_pred             h-----------HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHH-cC----CCEEEEEECCCccc
Confidence            2           22223334567899999999997788887777776654 23    39999999999874

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.67  E-value=2e-15  Score=133.96  Aligned_cols=173  Identities=16%  Similarity=0.211  Sum_probs=107.8

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCC------Cc-cc---c----cCCCCCcceeeEEEEEEeeCCcEEEEEeCCCC
Q 024985           14 SPSNAERTLVLVGRTGNGKSATGNSILGR------RA-FK---S----KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (259)
Q Consensus        14 s~~~~~~~I~l~G~~g~GKSslin~l~~~------~~-~~---~----~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~   79 (259)
                      +...+..+|+++|+.++|||||+++|++.      .. ..   .    .....+.|.+.....+. .++..+.|+||||+
T Consensus        56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~-~~~~~i~~iDtPGh  134 (447)
T PLN03127         56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYE-TAKRHYAHVDCPGH  134 (447)
T ss_pred             hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEc-CCCeEEEEEECCCc
Confidence            44567789999999999999999999732      10 00   0    11125667766655544 45678999999997


Q ss_pred             CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe-EEEEEeCCCCCCCCcccHH
Q 024985           80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY-MIVVFTGGNELEDNDETLE  158 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~nk~D~~~~~~~~~~  158 (259)
                      .+       +...+..    ....+|++++|+|+..+...++.+.+..+.. ++.    | +++|+||+|+.+.  ..+.
T Consensus       135 ~~-------f~~~~~~----g~~~aD~allVVda~~g~~~qt~e~l~~~~~-~gi----p~iIvviNKiDlv~~--~~~~  196 (447)
T PLN03127        135 AD-------YVKNMIT----GAAQMDGGILVVSAPDGPMPQTKEHILLARQ-VGV----PSLVVFLNKVDVVDD--EELL  196 (447)
T ss_pred             cc-------hHHHHHH----HHhhCCEEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEEEeeccCCH--HHHH
Confidence            42       2222222    3345799999999987888888888887766 443    6 5789999998754  3333


Q ss_pred             hhhCCCCCchHHHHHHHcCC---cEEEEeCCCc---cccc---chhHHHHHHHHHHHHHH
Q 024985          159 DYLGPECPKPLKEILQLCEN---RRVLFDNKTK---DAAT---RTEQVGKLISLVNSVIL  209 (259)
Q Consensus       159 ~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~---~~~~---~~~~i~eLl~~i~~~~~  209 (259)
                      +.+.    ..++.++..++.   .+.++..++.   .+.+   ...++.+|++.+.++++
T Consensus       197 ~~i~----~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        197 ELVE----MELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HHHH----HHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            3222    134555555432   1222222111   1100   12357888888888765

>cd04135 Tc10 TC10 subfamily

Probab=99.66  E-value=4.8e-15  Score=115.65  Aligned_cols=164  Identities=15%  Similarity=0.053  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|++|+|||||++++.+...... ..  ++........+. .++.  .+.+|||||.....           ...
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~-~~--~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~-----------~~~   65 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEE-YV--PTVFDHYAVSVT-VGGKQYLLGLYDTAGQEDYD-----------RLR   65 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC-CC--CceeeeeEEEEE-ECCEEEEEEEEeCCCccccc-----------ccc
Confidence            4799999999999999999998764221 11  111111111122 2333  57899999964321           112


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhh---hC-CCCCchHHH
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDY---LG-PECPKPLKE  171 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~---~~-~~~~~~l~~  171 (259)
                      ......+|++++|+|.+++-+...  ..++..+... .  ...|+++|+||+|+.+.. ......   .. .-.......
T Consensus        66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~--~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~  141 (174)
T cd04135          66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-A--PNVPYLLVGTQIDLRDDP-KTLARLNDMKEKPVTVEQGQK  141 (174)
T ss_pred             cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-C--CCCCEEEEeEchhhhcCh-hhHHHHhhccCCCCCHHHHHH
Confidence            234668899999999985433333  2345555442 2  235999999999986441 111111   00 000112334


Q ss_pred             HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      +....+.. .+|..++..+    .|+.++++.+...
T Consensus       142 ~~~~~~~~-~~~e~Sa~~~----~gi~~~f~~~~~~  172 (174)
T cd04135         142 LAKEIGAH-CYVECSALTQ----KGLKTVFDEAILA  172 (174)
T ss_pred             HHHHcCCC-EEEEecCCcC----CCHHHHHHHHHHH
Confidence            44444432 2455555444    7899999877653

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.66  E-value=2.6e-15  Score=125.81  Aligned_cols=135  Identities=24%  Similarity=0.350  Sum_probs=92.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccccc----CCC--CCcceeeEEEEEEee-CC--cEEEEEeCCCCCCCCCChHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSK----AGS--SGVTKTCEMQRTMLK-DG--QVVNVIDTPGLFDSSADSEF   88 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~----~~~--~~~T~~~~~~~~~~~-~~--~~~~liDTPG~~~~~~~~~~   88 (259)
                      -.++|+++|++|.|||||+|+|++.......    ..+  ...|........... ++  ..+++|||||+++.-.. ..
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN-s~  100 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN-SK  100 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc-cc
Confidence            4689999999999999999999988532221    111  123333444433322 22  27999999999987543 33


Q ss_pred             HHHHHHHHHh------------------hcCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 024985           89 VSKEIVKCIG------------------MAKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNE  149 (259)
Q Consensus        89 ~~~~~~~~~~------------------~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~  149 (259)
                      .+..+..++.                  .....+|++||.+.++ +++++.|.+.++.|.+.      .++|.|+.|+|.
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~KaD~  174 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKADT  174 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeecccc
Confidence            3333333332                  1234689999999986 68999999988888763      389999999999


Q ss_pred             CCCCcccHHhhh
Q 024985          150 LEDNDETLEDYL  161 (259)
Q Consensus       150 ~~~~~~~~~~~~  161 (259)
                      +..  +++.++.
T Consensus       175 lT~--~El~~~K  184 (373)
T COG5019         175 LTD--DELAEFK  184 (373)
T ss_pred             CCH--HHHHHHH
Confidence            987  6665543

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.66  E-value=1.3e-14  Score=117.40  Aligned_cols=165  Identities=13%  Similarity=0.034  Sum_probs=94.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      .+|+++|.+|||||||++++++..... ..  . .|....+. .+. .++  ..+.||||+|-.           .+...
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~-~y--~-pTi~~~~~~~~~-~~~~~v~L~iwDt~G~e-----------~~~~l   65 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPG-SY--V-PTVFENYTASFE-IDKRRIELNMWDTSGSS-----------YYDNV   65 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC-cc--C-CccccceEEEEE-ECCEEEEEEEEeCCCcH-----------HHHHH
Confidence            589999999999999999999776422 11  1 12111111 122 233  478899999942           33333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC----CCCchHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP----ECPKPLK  170 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~----~~~~~l~  170 (259)
                      ...+++++|++|+|+|++++-+...  ..+...+... ..  ..|+++|.||+|+..+. ..+......    -......
T Consensus        66 ~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~-~~--~~piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~  141 (222)
T cd04173          66 RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF-CP--NAKVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGT  141 (222)
T ss_pred             hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEEECcccccch-hhhhhhhhccCCccCHHHHH
Confidence            4456789999999999985533332  1233333332 22  34999999999986431 111111100    0112334


Q ss_pred             HHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          171 EILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      .+.+..+. ..++..++...   ..++.+++..+....
T Consensus       142 ~~ak~~~~-~~y~E~SAk~~---~~~V~~~F~~~~~~~  175 (222)
T cd04173         142 VLAKQVGA-VSYVECSSRSS---ERSVRDVFHVATVAS  175 (222)
T ss_pred             HHHHHcCC-CEEEEcCCCcC---CcCHHHHHHHHHHHH
Confidence            44545443 23555555433   135999998766643

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.65  E-value=1.2e-14  Score=113.45  Aligned_cols=163  Identities=16%  Similarity=0.106  Sum_probs=91.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeE-EEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCE-MQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~-~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      .+|+++|++|||||||++++.+...... .  . .|.... ...+. .++  ..+.+|||||...           +...
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~-~--~-~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~~   65 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEV-Y--V-PTVFENYVADIE-VDGKQVELALWDTAGQED-----------YDRL   65 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCC-C--C-CccccceEEEEE-ECCEEEEEEEEeCCCchh-----------hhhc
Confidence            5899999999999999999998764221 1  1 111111 11222 233  3689999999532           1112


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC----CCCchHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP----ECPKPLK  170 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~----~~~~~l~  170 (259)
                      ....+.++|++++|+|++++-+...  ..++..+....   ...|+++|+||+|+.... ....+....    ......+
T Consensus        66 ~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~-~~~~~i~~~~~~~v~~~~~~  141 (175)
T cd01870          66 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDE-HTRRELAKMKQEPVKPEEGR  141 (175)
T ss_pred             cccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhcccCh-hhhhhhhhccCCCccHHHHH
Confidence            2234568899999999984433222  22344444321   235999999999976431 111111110    0011233


Q ss_pred             HHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          171 EILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      .+...++. ..++..++..+    .++.++++.+...
T Consensus       142 ~~~~~~~~-~~~~~~Sa~~~----~~v~~lf~~l~~~  173 (175)
T cd01870         142 DMANKIGA-FGYMECSAKTK----EGVREVFEMATRA  173 (175)
T ss_pred             HHHHHcCC-cEEEEeccccC----cCHHHHHHHHHHH
Confidence            44444433 23444444433    7999999887653

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04169 RF3 RF3 subfamily

Probab=99.65  E-value=4.4e-15  Score=123.53  Aligned_cols=117  Identities=17%  Similarity=0.234  Sum_probs=75.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCC--------------------CCCcceeeEEEEEEeeCCcEEEEEeCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAG--------------------SSGVTKTCEMQRTMLKDGQVVNVIDTPG   78 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~--------------------~~~~T~~~~~~~~~~~~~~~~~liDTPG   78 (259)
                      .++|+++|++|+|||||+++|+..........                    ..+.|.......+. ..+..+.+|||||
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~-~~~~~i~liDTPG   80 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFE-YRDCVINLLDTPG   80 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEe-eCCEEEEEEECCC
Confidence            36899999999999999999985322111100                    01222223333344 4678999999999


Q ss_pred             CCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           79 LFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ..+.       ......    ....+|++|+|+|++.+.......+++.... .+    .|+++++||+|....
T Consensus        81 ~~df-------~~~~~~----~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~-~~----~P~iivvNK~D~~~a  138 (267)
T cd04169          81 HEDF-------SEDTYR----TLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL-RG----IPIITFINKLDREGR  138 (267)
T ss_pred             chHH-------HHHHHH----HHHHCCEEEEEEECCCCccHHHHHHHHHHHh-cC----CCEEEEEECCccCCC
Confidence            6532       112222    2345699999999987776666666655433 33    399999999997654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK09866 hypothetical protein; Provisional

Probab=99.65  E-value=3e-14  Score=127.77  Aligned_cols=75  Identities=16%  Similarity=0.178  Sum_probs=54.2

Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGN  148 (259)
Q Consensus        69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D  148 (259)
                      ..++|+||||++.+..  ..+.+.+.+    ....+|+||||+|++...+..+..+++.+.+. ++  ..|+++|+||+|
T Consensus       230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K--~~PVILVVNKID  300 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQ--SVPLYVLVNKFD  300 (741)
T ss_pred             CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CC--CCCEEEEEEccc
Confidence            3689999999986432  112333333    35567999999999867888888888888763 32  139999999999


Q ss_pred             CCCC
Q 024985          149 ELED  152 (259)
Q Consensus       149 ~~~~  152 (259)
                      ..+.
T Consensus       301 l~dr  304 (741)
T PRK09866        301 QQDR  304 (741)
T ss_pred             CCCc
Confidence            8743

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.65  E-value=9.4e-15  Score=116.58  Aligned_cols=151  Identities=15%  Similarity=0.077  Sum_probs=90.9

Q ss_pred             EcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE--EEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcC
Q 024985           25 VGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ--RTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAK  101 (259)
Q Consensus        25 ~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~--~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~  101 (259)
                      +|.+|||||||+++++.... ...   ...|......  .+.. .....+.||||||..           .+......++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f-~~~---~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e-----------~~~~l~~~~~   65 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEF-EKK---YVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE-----------KFGGLRDGYY   65 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCC-CCC---CCCceeEEEEEEEEEECCEEEEEEEEECCCch-----------hhhhhhHHHh
Confidence            69999999999999986553 111   1122222221  1121 123589999999953           2333334467


Q ss_pred             CCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcE
Q 024985          102 DGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRR  180 (259)
Q Consensus       102 ~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (259)
                      .++|++|+|+|++++.+... ..|+..+.+.. .  ..|+++|+||+|+...  . ..       .+.+ .+....+  +
T Consensus        66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~--~~piilvgNK~Dl~~~--~-v~-------~~~~-~~~~~~~--~  129 (200)
T smart00176       66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-E--NIPIVLCGNKVDVKDR--K-VK-------AKSI-TFHRKKN--L  129 (200)
T ss_pred             cCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-C--CCCEEEEEECcccccc--c-CC-------HHHH-HHHHHcC--C
Confidence            78899999999986544433 34555555532 2  3499999999997532  1 00       1111 2223323  3


Q ss_pred             EEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          181 VLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       181 ~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .+|..++..+    .++.+++..+...+.+
T Consensus       130 ~~~e~SAk~~----~~v~~~F~~l~~~i~~  155 (200)
T smart00176      130 QYYDISAKSN----YNFEKPFLWLARKLIG  155 (200)
T ss_pred             EEEEEeCCCC----CCHHHHHHHHHHHHHh
Confidence            3555555544    7899999998876644

Ran is involved in the active transport of proteins through nuclear pores.

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=5.6e-15  Score=114.41  Aligned_cols=168  Identities=14%  Similarity=0.149  Sum_probs=106.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      +.-++|+++|.||+|||-|+..++..+.-...-++.++........   .++  ....||||+|.           +.+.
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~---vd~k~vkaqIWDTAGQ-----------ERyr   77 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVN---VDGKTVKAQIWDTAGQ-----------ERYR   77 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeecee---ecCcEEEEeeecccch-----------hhhc
Confidence            4558999999999999999999987775333334444433322222   333  37799999993           3455


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      .....+++++.+.++|+|++.+.+.+. .+||+.|+......  .++++|.||+|+..-  ..+       ..+.-+...
T Consensus        78 AitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~n--ivimLvGNK~DL~~l--raV-------~te~~k~~A  146 (222)
T KOG0087|consen   78 AITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSN--IVIMLVGNKSDLNHL--RAV-------PTEDGKAFA  146 (222)
T ss_pred             cccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCC--eEEEEeecchhhhhc--ccc-------chhhhHhHH
Confidence            555678899999999999985655543 56677776654443  489999999998752  111       112233344


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      +.  +..+++..++.+..+...-+..++..|...+.++
T Consensus       147 e~--~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k  182 (222)
T KOG0087|consen  147 EK--EGLFFLETSALDATNVEKAFERVLTEIYKIVSKK  182 (222)
T ss_pred             Hh--cCceEEEecccccccHHHHHHHHHHHHHHHHHHH
Confidence            43  2344556665555344455555666665555443

>PRK00049 elongation factor Tu; Reviewed

Probab=99.64  E-value=1e-14  Score=128.04  Aligned_cols=170  Identities=17%  Similarity=0.176  Sum_probs=107.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccc--------------ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFK--------------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS   82 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~--------------~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~   82 (259)
                      .+..+|+++|..++|||||+++|++.....              ......+.|.......+. .++..+.++||||+.  
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~--   86 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE-TEKRHYAHVDCPGHA--   86 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEc-CCCeEEEEEECCCHH--
Confidence            566899999999999999999998731100              001134566665544443 356789999999953  


Q ss_pred             CCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEE-EEEeCCCCCCCCcccHHhhh
Q 024985           83 SADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMI-VVFTGGNELEDNDETLEDYL  161 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~i-vV~nk~D~~~~~~~~~~~~~  161 (259)
                               .+...+......+|++++|+|+..+....+.+.+..+.. ++.    |.+ +++||+|+.+.  ....+.+
T Consensus        87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~-~g~----p~iiVvvNK~D~~~~--~~~~~~~  150 (396)
T PRK00049         87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV----PYIVVFLNKCDMVDD--EELLELV  150 (396)
T ss_pred             ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH-cCC----CEEEEEEeecCCcch--HHHHHHH
Confidence                     344444445678899999999987888888888887766 443    765 68999998753  2222222


Q ss_pred             CCCCCchHHHHHHHcCC-----cEEEEeCCCcc----cccchhHHHHHHHHHHHHHH
Q 024985          162 GPECPKPLKEILQLCEN-----RRVLFDNKTKD----AATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       162 ~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~----~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .    ..++.++..++.     .++..++....    .....+++..|++.|..+++
T Consensus       151 ~----~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        151 E----MEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             H----HHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            1    245566665442     22333332211    01122367788888887654

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.64  E-value=7e-15  Score=129.23  Aligned_cols=172  Identities=17%  Similarity=0.239  Sum_probs=104.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCC------Cccc----c----cCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGR------RAFK----S----KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~------~~~~----~----~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~   81 (259)
                      .++..+|+++|..++|||||+++|++.      ..+.    .    .....+.|.+.....+. .++..+.||||||..+
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~-~~~~~~~liDtpGh~~   87 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHAD   87 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEc-CCCEEEEEEECCchHH
Confidence            456799999999999999999999843      1100    0    00124666666554443 3566899999999532


Q ss_pred             CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh
Q 024985           82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~  161 (259)
                                 +...+......+|++++|+|++.+....+.+.+..+.. .+.   .++++|+||+|+.+.  +...+.+
T Consensus        88 -----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~-~gi---~~iIvvvNK~Dl~~~--~~~~~~~  150 (394)
T TIGR00485        88 -----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQ-VGV---PYIVVFLNKCDMVDD--EELLELV  150 (394)
T ss_pred             -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CEEEEEEEecccCCH--HHHHHHH
Confidence                       22222333457799999999987788888888887765 343   245578999998754  2222222


Q ss_pred             CCCCCchHHHHHHHcCCc---EEEEeCCCccc----ccchhHHHHHHHHHHHHHH
Q 024985          162 GPECPKPLKEILQLCENR---RVLFDNKTKDA----ATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~----~~~~~~i~eLl~~i~~~~~  209 (259)
                      .    ..++.+++..+..   +.++..++..+    .....++.+|++.+..+++
T Consensus       151 ~----~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~  201 (394)
T TIGR00485       151 E----MEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIP  201 (394)
T ss_pred             H----HHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCC
Confidence            1    1355556555421   22333332211    1222456777777776553

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=1.3e-14  Score=112.75  Aligned_cols=164  Identities=17%  Similarity=0.140  Sum_probs=109.2

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHH
Q 024985           15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKE   92 (259)
Q Consensus        15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~   92 (259)
                      +.....+|+++|.+|||||+++-.+.......+-.++.+...  ....+. .++  ..+.+|||.|-           +.
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDF--k~kti~-l~g~~i~lQiWDtaGQ-----------er   73 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDF--KIKTIE-LDGKKIKLQIWDTAGQ-----------ER   73 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEE--EEEEEE-eCCeEEEEEEEEcccc-----------hh
Confidence            345568999999999999999999987665222222222222  222222 334  37899999993           35


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985           93 IVKCIGMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE  171 (259)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (259)
                      +......++++|+++++|+|+++.-+.+ ...|++.+.+.-..  ..+.++|.||+|+...  ..       -....-.+
T Consensus        74 f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~--~v~~~LvGNK~D~~~~--R~-------V~~e~ge~  142 (207)
T KOG0078|consen   74 FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASD--DVVKILVGNKCDLEEK--RQ-------VSKERGEA  142 (207)
T ss_pred             HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC--CCcEEEeecccccccc--cc-------ccHHHHHH
Confidence            5566667788999999999998554443 35688888876544  3499999999997753  11       12335667


Q ss_pred             HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ++...+-.  ++..+++.+    .+|.+.+-.+...+.
T Consensus       143 lA~e~G~~--F~EtSAk~~----~NI~eaF~~La~~i~  174 (207)
T KOG0078|consen  143 LAREYGIK--FFETSAKTN----FNIEEAFLSLARDIL  174 (207)
T ss_pred             HHHHhCCe--EEEccccCC----CCHHHHHHHHHHHHH
Confidence            77777655  445555444    578887776666554

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=3.3e-15  Score=126.10  Aligned_cols=156  Identities=19%  Similarity=0.262  Sum_probs=105.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccc-----cCCCCCcceeeEEEEEEee-CC--cEEEEEeCCCCCCCCCChHH--
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKS-----KAGSSGVTKTCEMQRTMLK-DG--QVVNVIDTPGLFDSSADSEF--   88 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~-----~~~~~~~T~~~~~~~~~~~-~~--~~~~liDTPG~~~~~~~~~~--   88 (259)
                      .++++++|++|.|||||||+|++......     ....+..|........... +|  ..+++|||||+++.......  
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            48999999999999999999998854322     1111222333444433322 23  37999999999987543321  


Q ss_pred             -----HHHHHHHHHhh---------cCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC
Q 024985           89 -----VSKEIVKCIGM---------AKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDN  153 (259)
Q Consensus        89 -----~~~~~~~~~~~---------~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~  153 (259)
                           +..++..++..         ....+|++||.+.++ +++.+.|.+.++.+...      .++|.|+.|+|.+.. 
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~------vNiIPVI~KaD~lT~-  173 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK------VNLIPVIAKADTLTK-  173 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc------ccccceeeccccCCH-
Confidence                 22222222211         123689999999986 56999999988888653      389999999999987 


Q ss_pred             cccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCC
Q 024985          154 DETLEDYLGPECPKPLKEILQLCENRRVLFDNKT  187 (259)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  187 (259)
                       +++..+..     .+.+.++.+.-+++.|....
T Consensus       174 -~El~~~K~-----~I~~~i~~~nI~vf~fp~~~  201 (366)
T KOG2655|consen  174 -DELNQFKK-----RIRQDIEEHNIKVFDFPTDE  201 (366)
T ss_pred             -HHHHHHHH-----HHHHHHHHcCcceecCCCCc
Confidence             66765544     57777777777777776653

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.64  E-value=2.4e-15  Score=117.71  Aligned_cols=160  Identities=14%  Similarity=0.156  Sum_probs=100.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+|+++|..||||||+++.|.......     ..+|.......+. ..+..+.++|.+|-.           .+...
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~-~~~~~~~~~d~gG~~-----------~~~~~   74 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIK-YKGYSLTIWDLGGQE-----------SFRPL   74 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEE-ETTEEEEEEEESSSG-----------GGGGG
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceee-eCcEEEEEEeccccc-----------ccccc
Confidence            567899999999999999999998765422     2234444444444 577899999999942           22333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCC-cccHHhhhCCCCCchHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDN-DETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~-~~~~~~~~~~~~~~~l~~~~  173 (259)
                      ....+..+|++|||+|.++.-.  -.+..+.|.+++...  ...|++|++||.|....- ..++.+.+.-      ..+.
T Consensus        75 w~~y~~~~~~iIfVvDssd~~~--l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l------~~l~  146 (175)
T PF00025_consen   75 WKSYFQNADGIIFVVDSSDPER--LQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGL------EKLK  146 (175)
T ss_dssp             GGGGHTTESEEEEEEETTGGGG--HHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTG------GGTT
T ss_pred             ceeeccccceeEEEEeccccee--ecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhh------hhcc
Confidence            3455678899999999983221  112333334433322  235999999999976541 1223333221      1111


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                        ...++.++..++..+    .|+.|.+++|.+.
T Consensus       147 --~~~~~~v~~~sa~~g----~Gv~e~l~WL~~~  174 (175)
T PF00025_consen  147 --NKRPWSVFSCSAKTG----EGVDEGLEWLIEQ  174 (175)
T ss_dssp             --SSSCEEEEEEBTTTT----BTHHHHHHHHHHH
T ss_pred             --cCCceEEEeeeccCC----cCHHHHHHHHHhc
Confidence              134566666666555    7999999988764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.63  E-value=1e-14  Score=118.31  Aligned_cols=117  Identities=17%  Similarity=0.113  Sum_probs=75.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCC-------------CCCcceeeEE-----------------------EEEE
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAG-------------SSGVTKTCEM-----------------------QRTM   64 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~-------------~~~~T~~~~~-----------------------~~~~   64 (259)
                      +|+++|..++|||||++.+..... ..+..             ..+.|.....                       ....
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   79 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGEL-DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC   79 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCc-CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence            588999999999999999985322 11000             0111110000                       0111


Q ss_pred             eeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEE
Q 024985           65 LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVF  144 (259)
Q Consensus        65 ~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~  144 (259)
                      ...+..+.++||||...       +.......+.  ...+|++++|+|++.++...+..++.++.. .+.    |+++|+
T Consensus        80 ~~~~~~i~liDtpG~~~-------~~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~-~~i----p~ivvv  145 (224)
T cd04165          80 EKSSKLVTFIDLAGHER-------YLKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALA-LNI----PVFVVV  145 (224)
T ss_pred             eeCCcEEEEEECCCcHH-------HHHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC----CEEEEE
Confidence            23467899999999532       2222222221  135799999999988889999999998876 443    899999


Q ss_pred             eCCCCCCC
Q 024985          145 TGGNELED  152 (259)
Q Consensus       145 nk~D~~~~  152 (259)
                      ||+|+...
T Consensus       146 NK~D~~~~  153 (224)
T cd04165         146 TKIDLAPA  153 (224)
T ss_pred             ECccccCH
Confidence            99998754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.63  E-value=9.3e-15  Score=112.63  Aligned_cols=157  Identities=17%  Similarity=0.172  Sum_probs=93.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      +|+++|.+|||||||++++.+.........+.+.  ......+. .++  ..+.+|||||...           +.....
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~~l~i~D~~g~~~-----------~~~~~~   66 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGI--DSYSKEVS-IDGKPVNLEIWDTSGQER-----------FDSLRD   66 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSE--EEEEEEEE-ETTEEEEEEEEEETTSGG-----------GHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccc--cccccccc-cccccccccccccccccc-----------cccccc
Confidence            6899999999999999999977642211111111  12222222 233  3799999999431           111222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      ..+..+|++|+|+|.+++-+... ..++..+....+.  ..|++||.||.|+....  .+       .....+.+....+
T Consensus        67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~--~~~iivvg~K~D~~~~~--~v-------~~~~~~~~~~~~~  135 (162)
T PF00071_consen   67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPE--DIPIIVVGNKSDLSDER--EV-------SVEEAQEFAKELG  135 (162)
T ss_dssp             HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTT--TSEEEEEEETTTGGGGS--SS-------CHHHHHHHHHHTT
T ss_pred             ccccccccccccccccccccccccccccccccccccc--cccceeeeccccccccc--cc-------hhhHHHHHHHHhC
Confidence            34567799999999984433222 3555556554442  24999999999977521  11       1124556666666


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ..++..++.  .+    .++.+++..+.+.+
T Consensus       136 ~~~~e~Sa~--~~----~~v~~~f~~~i~~i  160 (162)
T PF00071_consen  136 VPYFEVSAK--NG----ENVKEIFQELIRKI  160 (162)
T ss_dssp             SEEEEEBTT--TT----TTHHHHHHHHHHHH
T ss_pred             CEEEEEECC--CC----CCHHHHHHHHHHHH
Confidence            444444433  33    68888887765543

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.63  E-value=1.8e-14  Score=112.48  Aligned_cols=162  Identities=17%  Similarity=0.050  Sum_probs=91.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ++|+++|++|+|||||++++.+.... ...  .+++......... .++  ..+.+|||||...           +....
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~-~~~--~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~~~~   65 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYP-TEY--VPTAFDNFSVVVL-VDGKPVRLQLCDTAGQDE-----------FDKLR   65 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCC-CCC--CCceeeeeeEEEE-ECCEEEEEEEEECCCChh-----------hcccc
Confidence            47999999999999999999876542 221  1211111111122 233  4788999999632           22222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC----CCCchHHH
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP----ECPKPLKE  171 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~----~~~~~l~~  171 (259)
                      .....++|++|+|+|++++.+...  ..++..+.... .  ..|+++|+||+|+.... .....+...    -.......
T Consensus        66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~--~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~  141 (173)
T cd04130          66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-P--KAPIILVGTQADLRTDV-NVLIQLARYGEKPVSQSRAKA  141 (173)
T ss_pred             ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEeeChhhccCh-hHHHHHhhcCCCCcCHHHHHH
Confidence            345678899999999985544333  24555555421 1  24999999999986431 111111110    00112334


Q ss_pred             HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985          172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVN  205 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~  205 (259)
                      +.+..+. ..++..++..+    .++.+|++.+.
T Consensus       142 ~a~~~~~-~~~~e~Sa~~~----~~v~~lf~~~~  170 (173)
T cd04130         142 LAEKIGA-CEYIECSALTQ----KNLKEVFDTAI  170 (173)
T ss_pred             HHHHhCC-CeEEEEeCCCC----CCHHHHHHHHH
Confidence            4444333 12444444433    78999988753

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.62  E-value=4.9e-14  Score=113.96  Aligned_cols=162  Identities=15%  Similarity=0.051  Sum_probs=91.1

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe---eCCcEEEEEeCCCCCCCCCChHHHHH
Q 024985           15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML---KDGQVVNVIDTPGLFDSSADSEFVSK   91 (259)
Q Consensus        15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~---~~~~~~~liDTPG~~~~~~~~~~~~~   91 (259)
                      ......+|+++|++|||||||++.++.........    .|....+.....   .....+.+|||||....         
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~---------   71 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYI----PTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF---------   71 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCC----CccceEEEEEEEEECCeEEEEEEEECCCchhh---------
Confidence            34456899999999999999997655443211111    122222221111   22358899999994321         


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHH
Q 024985           92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLK  170 (259)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~  170 (259)
                        .......+..++++++|+|++++.+... ..++..+.... .  ..|+++|+||+|+...  ..         .....
T Consensus        72 --~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~--~~~i~lv~nK~Dl~~~--~~---------~~~~~  135 (215)
T PTZ00132         72 --GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-E--NIPIVLVGNKVDVKDR--QV---------KARQI  135 (215)
T ss_pred             --hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccCccc--cC---------CHHHH
Confidence              1111223456799999999985544433 23444444332 1  2488999999997532  10         11112


Q ss_pred             HHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          171 EILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      .+.+..+..  ++..++..+    .++.+++..|...+..+
T Consensus       136 ~~~~~~~~~--~~e~Sa~~~----~~v~~~f~~ia~~l~~~  170 (215)
T PTZ00132        136 TFHRKKNLQ--YYDISAKSN----YNFEKPFLWLARRLTND  170 (215)
T ss_pred             HHHHHcCCE--EEEEeCCCC----CCHHHHHHHHHHHHhhc
Confidence            233333333  344444333    67888888877766554

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.62  E-value=4.4e-14  Score=129.51  Aligned_cols=154  Identities=16%  Similarity=0.163  Sum_probs=95.5

Q ss_pred             cCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCcc
Q 024985           26 GRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIH  105 (259)
Q Consensus        26 G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (259)
                      |.+|+|||||+|+++|... .. ...+++|.+.....+. .++..+.+|||||.++......  .+.+.... .....+|
T Consensus         1 G~pNvGKSSL~N~Ltg~~~-~v-~n~pG~Tv~~~~~~i~-~~~~~i~lvDtPG~~~~~~~s~--~e~v~~~~-l~~~~aD   74 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ-TV-GNWPGVTVEKKEGKLG-FQGEDIEIVDLPGIYSLTTFSL--EEEVARDY-LLNEKPD   74 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC-ee-cCCCCeEEEEEEEEEE-ECCeEEEEEECCCccccCccch--HHHHHHHH-HhhcCCC
Confidence            8999999999999999874 22 2345667666555554 5677899999999876433211  11122211 1134679


Q ss_pred             EEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeC
Q 024985          106 AVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDN  185 (259)
Q Consensus       106 ~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  185 (259)
                      ++++|+|++ .+.. ...+...+.+ .    ..|+++|+||+|+.+..  ..        ....+.+.+..+..++..+.
T Consensus        75 vvI~VvDat-~ler-~l~l~~ql~~-~----~~PiIIVlNK~Dl~~~~--~i--------~~d~~~L~~~lg~pvv~tSA  137 (591)
T TIGR00437        75 LVVNVVDAS-NLER-NLYLTLQLLE-L----GIPMILALNLVDEAEKK--GI--------RIDEEKLEERLGVPVVPTSA  137 (591)
T ss_pred             EEEEEecCC-cchh-hHHHHHHHHh-c----CCCEEEEEehhHHHHhC--CC--------hhhHHHHHHHcCCCEEEEEC
Confidence            999999998 3332 2222233332 2    24999999999986431  11        11234555555555544554


Q ss_pred             CCcccccchhHHHHHHHHHHHHH
Q 024985          186 KTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       186 ~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ..  +    +|+++|++.+.+..
T Consensus       138 ~t--g----~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       138 TE--G----RGIERLKDAIRKAI  154 (591)
T ss_pred             CC--C----CCHHHHHHHHHHHh
Confidence            33  2    78999999887654

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.62  E-value=8.9e-15  Score=122.23  Aligned_cols=115  Identities=20%  Similarity=0.235  Sum_probs=74.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccC--CC--------------CCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKA--GS--------------SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA   84 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~--~~--------------~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~   84 (259)
                      +|+++|.+|+|||||+|+|++........  ..              .+.|.......+. .++..+.+|||||..+   
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~~---   76 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLE-WKGHKINLIDTPGYAD---   76 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEE-ECCEEEEEEECcCHHH---
Confidence            58999999999999999997543211000  00              1222222223333 4677899999999642   


Q ss_pred             ChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           85 DSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                          .......    +...+|++++|+|++.+........++.+.. .+    .|.++|+||+|....
T Consensus        77 ----f~~~~~~----~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~-~~----~p~iivvNK~D~~~~  131 (268)
T cd04170          77 ----FVGETRA----ALRAADAALVVVSAQSGVEVGTEKLWEFADE-AG----IPRIIFINKMDRERA  131 (268)
T ss_pred             ----HHHHHHH----HHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECCccCCC
Confidence                1122222    3345699999999987777666666666554 33    399999999997754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.62  E-value=1.7e-14  Score=108.75  Aligned_cols=153  Identities=18%  Similarity=0.132  Sum_probs=84.9

Q ss_pred             EEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee---CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           24 LVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK---DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        24 l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~---~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      ++|++|+|||||+|+|++.......   ...|. .........   .+..+.+|||||.....           ......
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~---~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~~~   65 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEE---YETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFR-----------SLRRLY   65 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcc---cccch-hheeeEEEEECCEEEEEEEEecCChHHHH-----------hHHHHH
Confidence            5899999999999999987752111   11222 222222211   24689999999965321           111334


Q ss_pred             CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcE
Q 024985          101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRR  180 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (259)
                      ...+|++++|+|++...+..+...+.............|+++|+||+|.....  ......      ............+
T Consensus        66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~--~~~~~~------~~~~~~~~~~~~~  137 (157)
T cd00882          66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER--VVSEEE------LAEQLAKELGVPY  137 (157)
T ss_pred             hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc--chHHHH------HHHHHHhhcCCcE
Confidence            56779999999998544443332220111111222345999999999987552  111110      0222233333344


Q ss_pred             EEEeCCCcccccchhHHHHHHHHHH
Q 024985          181 VLFDNKTKDAATRTEQVGKLISLVN  205 (259)
Q Consensus       181 ~~~~~~~~~~~~~~~~i~eLl~~i~  205 (259)
                      +..++...      .++.+++..|.
T Consensus       138 ~~~s~~~~------~~i~~~~~~l~  156 (157)
T cd00882         138 FETSAKTG------ENVEELFEELA  156 (157)
T ss_pred             EEEecCCC------CChHHHHHHHh
Confidence            44444322      57888887764

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.62  E-value=1.8e-14  Score=109.09  Aligned_cols=167  Identities=16%  Similarity=0.143  Sum_probs=103.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC---CcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS---GVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~---~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ..++|+++|.+|+|||||+|.+.......---.+.   ..|++..+.    ..-..+.||||.|-           +.+.
T Consensus         8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd----~~~vtlQiWDTAGQ-----------ERFq   72 (210)
T KOG0394|consen    8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD----DRSVTLQIWDTAGQ-----------ERFQ   72 (210)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc----CeEEEEEEEecccH-----------HHhh
Confidence            45899999999999999999998776422211122   233333322    12237899999993           3555


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHh--HHHHHHHHHHHh-cccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEE--GGAAIHSLESLF-GKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE  171 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~--~~~~l~~l~~~~-~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (259)
                      +.-...++++|+.++|+|++..-+.+  +..--+.|...- ..+-.-|+||+.||+|.....  +        .....+.
T Consensus        73 sLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~--~--------r~VS~~~  142 (210)
T KOG0394|consen   73 SLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK--S--------RQVSEKK  142 (210)
T ss_pred             hcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc--c--------ceeeHHH
Confidence            55566789999999999998443333  222222333221 122334999999999976541  1        1122233


Q ss_pred             HHHHc--CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985          172 ILQLC--ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG  213 (259)
Q Consensus       172 ~~~~~--~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~  213 (259)
                      -...|  .+.+++|..+++..    .++.+.++.+....-.+..
T Consensus       143 Aq~WC~s~gnipyfEtSAK~~----~NV~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  143 AQTWCKSKGNIPYFETSAKEA----TNVDEAFEEIARRALANED  182 (210)
T ss_pred             HHHHHHhcCCceeEEeccccc----ccHHHHHHHHHHHHHhccc
Confidence            33334  34577888887665    6788888877766555443

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.61  E-value=1.3e-14  Score=132.98  Aligned_cols=162  Identities=19%  Similarity=0.176  Sum_probs=98.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccc------cC-------CCCCcceeeEEEEEEee--CC--cEEEEEeCCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKS------KA-------GSSGVTKTCEMQRTMLK--DG--QVVNVIDTPGLFD   81 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~------~~-------~~~~~T~~~~~~~~~~~--~~--~~~~liDTPG~~~   81 (259)
                      .++|+++|.+++|||||+++|+.......      ..       ...+.|.......+.+.  ++  ..+.||||||..+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            57999999999999999999986431111      10       01245554443333332  22  5789999999754


Q ss_pred             CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh
Q 024985           82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~  161 (259)
                      .           ...+..++..+|++|+|+|++++.+..+...+..+.+ .+    .|+++|+||+|+....   ...  
T Consensus        83 F-----------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~~----ipiIiViNKiDl~~~~---~~~--  141 (595)
T TIGR01393        83 F-----------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-ND----LEIIPVINKIDLPSAD---PER--  141 (595)
T ss_pred             H-----------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-cC----CCEEEEEECcCCCccC---HHH--
Confidence            2           2222334456799999999997777776554443332 22    3899999999975431   111  


Q ss_pred             CCCCCchHHHHHHHcCCcE-EEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          162 GPECPKPLKEILQLCENRR-VLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                            ...++.+..+... .++..++..+    .|+.+|++.|.+.++..
T Consensus       142 ------~~~el~~~lg~~~~~vi~vSAktG----~GI~~Lle~I~~~lp~p  182 (595)
T TIGR01393       142 ------VKKEIEEVIGLDASEAILASAKTG----IGIEEILEAIVKRVPPP  182 (595)
T ss_pred             ------HHHHHHHHhCCCcceEEEeeccCC----CCHHHHHHHHHHhCCCC
Confidence                  1122223233211 1233343333    78999999998887654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>smart00053 DYNc Dynamin, GTPase

Probab=99.61  E-value=2e-14  Score=116.89  Aligned_cols=128  Identities=18%  Similarity=0.196  Sum_probs=81.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeE--------------------------------------
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCE--------------------------------------   59 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~--------------------------------------   59 (259)
                      ..+.|+++|++|+||||++++|+|...++.+..  .+|+.+.                                      
T Consensus        25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g--~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~  102 (240)
T smart00053       25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDR  102 (240)
T ss_pred             CCCeEEEEcCCCccHHHHHHHHhCCCccccCCC--cccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999764333211  1111100                                      


Q ss_pred             -------------EEEEEeeCCcEEEEEeCCCCCCCC--CChHHHHHHHHHHHhhcCC-CccEEEEEEeCCCCCCHhH-H
Q 024985           60 -------------MQRTMLKDGQVVNVIDTPGLFDSS--ADSEFVSKEIVKCIGMAKD-GIHAVLLVFSVRNRFSEEG-G  122 (259)
Q Consensus        60 -------------~~~~~~~~~~~~~liDTPG~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~il~v~d~~~~~~~~~-~  122 (259)
                                   ...+...+...+.||||||+....  .........+...+..+.. ..+++|+|+|++..+...+ .
T Consensus       103 ~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l  182 (240)
T smart00053      103 VTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL  182 (240)
T ss_pred             hcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH
Confidence                         000111122469999999997432  1123344455555444444 4469999999987777766 4


Q ss_pred             HHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          123 AAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       123 ~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      .+.+.+.. .+    .++++|+||+|....
T Consensus       183 ~ia~~ld~-~~----~rti~ViTK~D~~~~  207 (240)
T smart00053      183 KLAKEVDP-QG----ERTIGVITKLDLMDE  207 (240)
T ss_pred             HHHHHHHH-cC----CcEEEEEECCCCCCc
Confidence            66666654 23    499999999999865

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.61  E-value=2e-14  Score=113.55  Aligned_cols=149  Identities=18%  Similarity=0.229  Sum_probs=97.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCC-----CCCcceeeEEEEEEe-eCCc--EEEEEeCCCCCCCCCChHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAG-----SSGVTKTCEMQRTML-KDGQ--VVNVIDTPGLFDSSADSEFVS   90 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~-----~~~~T~~~~~~~~~~-~~~~--~~~liDTPG~~~~~~~~~~~~   90 (259)
                      .++|++||.+|.|||||+|.|+...+..+...     +.+.|+......... .++.  .+.+||||||+|.-. ++..+
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqIn-N~ncW  124 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQIN-NDNCW  124 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccC-ccchh
Confidence            57999999999999999999987665433221     223333333222221 2333  799999999998643 33333


Q ss_pred             HHHHHHHhh------------------cCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985           91 KEIVKCIGM------------------AKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE  151 (259)
Q Consensus        91 ~~~~~~~~~------------------~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~  151 (259)
                      +.+.+++..                  ....+|+++|.+.++ ..+.+.|.++++.|.+.      .+++.|+-|.|.+.
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPVIakaDtlT  198 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPVIAKADTLT  198 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeeeEeeccccc
Confidence            333333321                  123679999999987 66889999999998875      38999999999886


Q ss_pred             CCcccHHhhhCCCCCchHHHHHHHcCCcEE
Q 024985          152 DNDETLEDYLGPECPKPLKEILQLCENRRV  181 (259)
Q Consensus       152 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  181 (259)
                      -  ++..+|..     .+++-+...+..++
T Consensus       199 l--eEr~~Fkq-----rI~~el~~~~i~vY  221 (336)
T KOG1547|consen  199 L--EERSAFKQ-----RIRKELEKHGIDVY  221 (336)
T ss_pred             H--HHHHHHHH-----HHHHHHHhcCcccc
Confidence            5  44444432     45555555554433

>cd04129 Rho2 Rho2 subfamily

Probab=99.61  E-value=3.9e-14  Score=112.04  Aligned_cols=165  Identities=18%  Similarity=0.117  Sum_probs=93.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEE-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM-QRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~-~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      .+|+++|++|+|||||++.+....... ..  . .|....+ ..+. .++  ..+.+|||||......        +   
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~-~~--~-~t~~~~~~~~~~-~~~~~~~l~i~Dt~g~~~~~~--------~---   65 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPE-EY--H-PTVFENYVTDCR-VDGKPVQLALWDTAGQEEYER--------L---   65 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCc-cc--C-CcccceEEEEEE-ECCEEEEEEEEECCCChhccc--------c---
Confidence            489999999999999999998555321 11  1 1211111 1122 233  3578999999643211        1   


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC--CCCchHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP--ECPKPLKEI  172 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~--~~~~~l~~~  172 (259)
                      .......+|++++|+++++.-+...  ..++..+.....   ..|+++|+||+|+.... ...++....  ........+
T Consensus        66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~  141 (187)
T cd04129          66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLRQDA-VAKEEYRTQRFVPIQQGKRV  141 (187)
T ss_pred             chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhhhCc-ccccccccCCcCCHHHHHHH
Confidence            1123467799999999984433332  235565554332   35999999999975431 111110000  001123344


Q ss_pred             HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .+..+. ..+|..++..+    .++.++++.+.+.+.
T Consensus       142 ~~~~~~-~~~~e~Sa~~~----~~v~~~f~~l~~~~~  173 (187)
T cd04129         142 AKEIGA-KKYMECSALTG----EGVDDVFEAATRAAL  173 (187)
T ss_pred             HHHhCC-cEEEEccCCCC----CCHHHHHHHHHHHHh
Confidence            444432 23455555544    799999998876543

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.61  E-value=7.2e-14  Score=111.17  Aligned_cols=166  Identities=14%  Similarity=0.022  Sum_probs=93.2

Q ss_pred             ceEEEEEcCCCCcHHHHHH-HHhCCCccccc-CCCCCccee----eEEEE------EEeeCC--cEEEEEeCCCCCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGN-SILGRRAFKSK-AGSSGVTKT----CEMQR------TMLKDG--QVVNVIDTPGLFDSSA   84 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin-~l~~~~~~~~~-~~~~~~T~~----~~~~~------~~~~~~--~~~~liDTPG~~~~~~   84 (259)
                      ..+|+++|.+|||||||++ .+.+....... ......|..    .....      ....++  ..+.||||||....  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            3689999999999999996 55443221000 000111211    10000      001222  48999999995421  


Q ss_pred             ChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHh---
Q 024985           85 DSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLED---  159 (259)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~---  159 (259)
                              +   ...++.++|++|+|+|++++.+....  .|+..+.... .  ..|+++|.||+|+..........   
T Consensus        80 --------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~~~~~~~~~~~~~  145 (195)
T cd01873          80 --------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-P--RVPVILVGCKLDLRYADLDEVNRARR  145 (195)
T ss_pred             --------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhccccccchhhhccc
Confidence                    1   12357789999999999866555443  3566665533 2  34999999999975421000000   


Q ss_pred             -------hhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          160 -------YLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       160 -------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                             -...-.....+.+.+..+.  .+|..++.++    .++.++++.+..
T Consensus       146 ~~~~~~~~~~~V~~~e~~~~a~~~~~--~~~E~SAkt~----~~V~e~F~~~~~  193 (195)
T cd01873         146 PLARPIKNADILPPETGRAVAKELGI--PYYETSVVTQ----FGVKDVFDNAIR  193 (195)
T ss_pred             ccccccccCCccCHHHHHHHHHHhCC--EEEEcCCCCC----CCHHHHHHHHHH
Confidence                   0000112234555665554  3566666554    789999987754

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=2.5e-14  Score=104.60  Aligned_cols=161  Identities=18%  Similarity=0.185  Sum_probs=102.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      -++|+++|..|+|||.|+..++..-.++....+.++........+. .+...+.+|||+|-           +.+.+...
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~-gekiklqiwdtagq-----------erfrsitq   74 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVN-GEKIKLQIWDTAGQ-----------ERFRSITQ   74 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEEC-CeEEEEEEeeccch-----------HHHHHHHH
Confidence            3689999999999999999998666544444444544444444332 23358999999993           35666666


Q ss_pred             hcCCCccEEEEEEeCCCCCCH-hHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSE-EGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~-~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      .+++.+|++|+|.|++...+. --.+||..+.+.-....  -.|+|.||+|+.+.  .++-+.+.       ++..+.  
T Consensus        75 syyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr--revp~qig-------eefs~~--  141 (213)
T KOG0095|consen   75 SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR--REVPQQIG-------EEFSEA--  141 (213)
T ss_pred             HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh--hhhhHHHH-------HHHHHh--
Confidence            778889999999999844333 33567777777544322  56899999998754  22222111       111111  


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      +..+++..++...    .+++.|+..+..-+
T Consensus       142 qdmyfletsakea----~nve~lf~~~a~rl  168 (213)
T KOG0095|consen  142 QDMYFLETSAKEA----DNVEKLFLDLACRL  168 (213)
T ss_pred             hhhhhhhhcccch----hhHHHHHHHHHHHH
Confidence            2233455555544    67888877655433

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.60  E-value=6.8e-14  Score=127.94  Aligned_cols=116  Identities=18%  Similarity=0.222  Sum_probs=77.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee-----CC------------cEEEEEeCCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK-----DG------------QVVNVIDTPGL   79 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-----~~------------~~~~liDTPG~   79 (259)
                      ..++.|+++|++|+|||||+|+|.+......  .+.+.|+..........     .+            ..+.||||||.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~--~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~   81 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAK--EAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH   81 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccC--CCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence            3457899999999999999999998764222  22333333322211100     00            12789999996


Q ss_pred             CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985           80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL  150 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~  150 (259)
                      .+           +..........+|++++|+|+++++...+...+..+.. .+    .|+++++||+|+.
T Consensus        82 e~-----------f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~-~~----vpiIvviNK~D~~  136 (586)
T PRK04004         82 EA-----------FTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKR-RK----TPFVVAANKIDRI  136 (586)
T ss_pred             HH-----------HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH-cC----CCEEEEEECcCCc
Confidence            42           22222234456799999999997777887777776654 23    3999999999985

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=5e-14  Score=106.98  Aligned_cols=162  Identities=14%  Similarity=0.091  Sum_probs=104.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+++++|.+|||||.|+-.++.....+....+.|...-.....+. .....+.+|||.|..           .+.+.
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id-~k~IKlqiwDtaGqe-----------~frsv   71 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTID-GKQIKLQIWDTAGQE-----------SFRSV   71 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEc-CceEEEEEEecCCcH-----------HHHHH
Confidence            345789999999999999999999888654444333333222222222 233489999999943           55556


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ...+++++-+.|+|+|++++-+... ..||.-++.....  +.-++++.||+|+...  ..+.       .+.-....++
T Consensus        72 ~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~--NmvImLiGNKsDL~~r--R~Vs-------~EEGeaFA~e  140 (216)
T KOG0098|consen   72 TRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNE--NMVIMLIGNKSDLEAR--REVS-------KEEGEAFARE  140 (216)
T ss_pred             HHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCC--CcEEEEEcchhhhhcc--cccc-------HHHHHHHHHH
Confidence            6677889999999999996655443 3455555553322  3378899999998754  1111       2233345555


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      .+  ..++..++...    ++++|.+..+...
T Consensus       141 hg--LifmETSakt~----~~VEEaF~nta~~  166 (216)
T KOG0098|consen  141 HG--LIFMETSAKTA----ENVEEAFINTAKE  166 (216)
T ss_pred             cC--ceeehhhhhhh----hhHHHHHHHHHHH
Confidence            33  33445555544    8899988766543

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.60  E-value=1.6e-14  Score=128.24  Aligned_cols=121  Identities=18%  Similarity=0.239  Sum_probs=79.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccc-----------------------------cCCCCCcceeeEEEEEEee
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKS-----------------------------KAGSSGVTKTCEMQRTMLK   66 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~-----------------------------~~~~~~~T~~~~~~~~~~~   66 (259)
                      ..+..+|+++|.+++|||||+++|+.......                             .....+.|.+.....+. .
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~-~   82 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE-T   82 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc-c
Confidence            45678999999999999999999984221000                             00123566666665554 4


Q ss_pred             CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC---CCHhHHHHHHHHHHHhcccccCeEEEE
Q 024985           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR---FSEEGGAAIHSLESLFGKKVFDYMIVV  143 (259)
Q Consensus        67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~---~~~~~~~~l~~l~~~~~~~~~~~~ivV  143 (259)
                      ++..+.||||||..           .+...+......+|++++|+|++++   ........+..+ ..++.   .+++||
T Consensus        83 ~~~~i~iiDtpGh~-----------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~---~~iIVv  147 (426)
T TIGR00483        83 DKYEVTIVDCPGHR-----------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGI---NQLIVA  147 (426)
T ss_pred             CCeEEEEEECCCHH-----------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCC---CeEEEE
Confidence            66799999999942           2333333345678999999999866   333333333333 22342   379999


Q ss_pred             EeCCCCCCC
Q 024985          144 FTGGNELED  152 (259)
Q Consensus       144 ~nk~D~~~~  152 (259)
                      +||+|+.+.
T Consensus       148 iNK~Dl~~~  156 (426)
T TIGR00483       148 INKMDSVNY  156 (426)
T ss_pred             EEChhccCc
Confidence            999998753

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.60  E-value=4.2e-14  Score=126.26  Aligned_cols=140  Identities=17%  Similarity=0.228  Sum_probs=92.8

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCccc--------------ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFK--------------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~--------------~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~   81 (259)
                      ..+..+|+++|.+++|||||+++|++.....              ......+.|.+.....+. .++..+.+|||||.. 
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-~~~~~i~liDtPGh~-  155 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE-TENRHYAHVDCPGHA-  155 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe-cCCcEEEEEECCCHH-
Confidence            4566899999999999999999998532100              011123555555444444 467799999999953 


Q ss_pred             CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh
Q 024985           82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~  161 (259)
                                .+...+......+|++++|+|+..+...++.+.+..+.. .|.   .++++++||+|+.+.  +...+.+
T Consensus       156 ----------~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~-~gi---~~iIvvvNK~Dl~~~--~~~~~~i  219 (478)
T PLN03126        156 ----------DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ-VGV---PNMVVFLNKQDQVDD--EELLELV  219 (478)
T ss_pred             ----------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEecccccCH--HHHHHHH
Confidence                      233333334457799999999988888888888877655 453   137889999998753  3333322


Q ss_pred             CCCCCchHHHHHHHcC
Q 024985          162 GPECPKPLKEILQLCE  177 (259)
Q Consensus       162 ~~~~~~~l~~~~~~~~  177 (259)
                      .    ..++.++..++
T Consensus       220 ~----~~i~~~l~~~g  231 (478)
T PLN03126        220 E----LEVRELLSSYE  231 (478)
T ss_pred             H----HHHHHHHHhcC
Confidence            2    25666666653

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.60  E-value=4.4e-15  Score=115.32  Aligned_cols=113  Identities=19%  Similarity=0.207  Sum_probs=71.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEE--------------------------------------
Q 024985           22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRT--------------------------------------   63 (259)
Q Consensus        22 I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~--------------------------------------   63 (259)
                      |+++|..++|||||||+|+|....+.+..  ++|..+.....                                      
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~--~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVG--PCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDS   78 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSS--STTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHH
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCccccc--ccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccc
Confidence            78999999999999999999987665543  22222111110                                      


Q ss_pred             -----------------EeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHH
Q 024985           64 -----------------MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIH  126 (259)
Q Consensus        64 -----------------~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~  126 (259)
                                       .......+.||||||+.+.......   .+.+    +...+|++|||+++++.++..+...+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~---~~~~----~~~~~d~vi~V~~~~~~~~~~~~~~l~  151 (168)
T PF00350_consen   79 IEGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTE---ITEE----YLPKADVVIFVVDANQDLTESDMEFLK  151 (168)
T ss_dssp             HHTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSH---HHHH----HHSTTEEEEEEEETTSTGGGHHHHHHH
T ss_pred             ccccccccccceeEEeeccccccceEEEeCCccccchhhhHH---HHHH----hhccCCEEEEEeccCcccchHHHHHHH
Confidence                             0011224999999999764332222   2222    235679999999999767766655555


Q ss_pred             HHHHHhcccccCeEEEEEeCC
Q 024985          127 SLESLFGKKVFDYMIVVFTGG  147 (259)
Q Consensus       127 ~l~~~~~~~~~~~~ivV~nk~  147 (259)
                      .......    ..+++|+||+
T Consensus       152 ~~~~~~~----~~~i~V~nk~  168 (168)
T PF00350_consen  152 QMLDPDK----SRTIFVLNKA  168 (168)
T ss_dssp             HHHTTTC----SSEEEEEE-G
T ss_pred             HHhcCCC----CeEEEEEcCC
Confidence            4444333    3799999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=4e-14  Score=124.00  Aligned_cols=163  Identities=15%  Similarity=0.190  Sum_probs=121.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      .+|.|.++|....|||||+-+|-+..+..  ....+.|+....+.+...  +...+.|+||||..           .|..
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~--~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHe-----------AFt~   70 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHE-----------AFTA   70 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCcccc--ccCCceeeEeeeEEEEeccCCCceEEEEcCCcHH-----------HHHH
Confidence            45789999999999999999999988744  345789999999988854  34799999999943           4554


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      +-...+.-+|+++||+++++++.+++.+.++.++. .+.    |++|++||+|+.+.++.....-+.+     .--..+.
T Consensus        71 mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~-a~v----P~iVAiNKiDk~~~np~~v~~el~~-----~gl~~E~  140 (509)
T COG0532          71 MRARGASVTDIAILVVAADDGVMPQTIEAINHAKA-AGV----PIVVAINKIDKPEANPDKVKQELQE-----YGLVPEE  140 (509)
T ss_pred             HHhcCCccccEEEEEEEccCCcchhHHHHHHHHHH-CCC----CEEEEEecccCCCCCHHHHHHHHHH-----cCCCHhh
Confidence            44455556799999999999999999999998887 454    9999999999996643332221111     0112344


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      +++-..++..++..+    .|+.+|+..|.-.
T Consensus       141 ~gg~v~~VpvSA~tg----~Gi~eLL~~ill~  168 (509)
T COG0532         141 WGGDVIFVPVSAKTG----EGIDELLELILLL  168 (509)
T ss_pred             cCCceEEEEeeccCC----CCHHHHHHHHHHH
Confidence            555566666776555    8999999987543

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.59  E-value=2.6e-14  Score=114.51  Aligned_cols=116  Identities=12%  Similarity=0.141  Sum_probs=69.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe---eCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML---KDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~---~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ++|+++|++|||||||++.|.+.......   .+.+  ........   ..+..+.+|||||...           +...
T Consensus         1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~---~s~~--~~~~~~~~~~~~~~~~~~l~D~pG~~~-----------~~~~   64 (203)
T cd04105           1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV---TSIE--PNVATFILNSEGKGKKFRLVDVPGHPK-----------LRDK   64 (203)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCCCcc---CcEe--ecceEEEeecCCCCceEEEEECCCCHH-----------HHHH
Confidence            47999999999999999999987642221   1111  11111111   1356899999999542           2222


Q ss_pred             HhhcCCCc-cEEEEEEeCCCCCCHhHHHHHHHHHHHh----cccccCeEEEEEeCCCCCCC
Q 024985           97 IGMAKDGI-HAVLLVFSVRNRFSEEGGAAIHSLESLF----GKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        97 ~~~~~~~~-~~il~v~d~~~~~~~~~~~~l~~l~~~~----~~~~~~~~ivV~nk~D~~~~  152 (259)
                      +...+..+ +++|||+|+.... ..-....+++..++    ......|++||+||+|+...
T Consensus        65 ~~~~~~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          65 LLETLKNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             HHHHHhccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            22334455 9999999998432 21122233332221    11123599999999998754

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.59  E-value=2.2e-15  Score=110.24  Aligned_cols=116  Identities=18%  Similarity=0.152  Sum_probs=67.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCccc--ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFK--SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~--~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      +|+++|.+|||||||+++|++.....  ......+.+......... .....+.++|++|........       ...  
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~-------~~~--   70 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVD-GDRQSLQFWDFGGQEEFYSQH-------QFF--   70 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEET-TEEEEEEEEEESSSHCHHCTS-------HHH--
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEec-CCceEEEEEecCccceecccc-------cch--
Confidence            69999999999999999999887641  111112222222222111 222358899999963211110       111  


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGN  148 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D  148 (259)
                        ...+|++++|+|+++..+... ..++.++....+.....|+++|.||.|
T Consensus        71 --~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   71 --LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             --HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             --hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence              224599999999984433333 345556666544333359999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.59  E-value=4e-15  Score=127.29  Aligned_cols=172  Identities=22%  Similarity=0.216  Sum_probs=93.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCC---cceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSG---VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI   93 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~---~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~   93 (259)
                      ..+.+|+|+|.+|+|||||||+|.|-..-..+..+.|   +|.....+..  +.-.++++||.||++....+.+.+.+.+
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~--p~~pnv~lWDlPG~gt~~f~~~~Yl~~~  110 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH--PKFPNVTLWDLPGIGTPNFPPEEYLKEV  110 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC--CCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence            4568999999999999999999987543223333333   3444444432  3334799999999987666555444433


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC-CC----CcccHHhhhCCCCCch
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL-ED----NDETLEDYLGPECPKP  168 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~-~~----~~~~~~~~~~~~~~~~  168 (259)
                          .  ....|.+|++.+ + +++..+..+++.+.+. |+    |+++|-||+|.. ..    .+.+..+      .+.
T Consensus       111 ----~--~~~yD~fiii~s-~-rf~~ndv~La~~i~~~-gK----~fyfVRTKvD~Dl~~~~~~~p~~f~~------e~~  171 (376)
T PF05049_consen  111 ----K--FYRYDFFIIISS-E-RFTENDVQLAKEIQRM-GK----KFYFVRTKVDSDLYNERRRKPRTFNE------EKL  171 (376)
T ss_dssp             ----T--GGG-SEEEEEES-S-S--HHHHHHHHHHHHT-T-----EEEEEE--HHHHHHHHHCC-STT--H------HTH
T ss_pred             ----c--ccccCEEEEEeC-C-CCchhhHHHHHHHHHc-CC----cEEEEEecccccHhhhhccCCcccCH------HHH
Confidence                1  223487766554 4 8999999999999884 54    999999999962 10    0011110      123


Q ss_pred             HHHHHHHc----------CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985          169 LKEILQLC----------ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG  213 (259)
Q Consensus       169 l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~  213 (259)
                      ++.+.+.|          ..+++++++.....    -.+..|.+.+..-++....
T Consensus       172 L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~----yDFp~L~~tL~~dLp~~Kr  222 (376)
T PF05049_consen  172 LQEIRENCLENLQKAGVSEPQVFLVSSFDLSK----YDFPKLEETLEKDLPAHKR  222 (376)
T ss_dssp             HHHHHHHHHHHHHCTT-SS--EEEB-TTTTTS----TTHHHHHHHHHHHS-GGGH
T ss_pred             HHHHHHHHHHHHHHcCCCcCceEEEeCCCccc----CChHHHHHHHHHHhHHHHH
Confidence            33333333          23556666654332    5688888888777666543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.59  E-value=5.3e-14  Score=129.07  Aligned_cols=164  Identities=18%  Similarity=0.169  Sum_probs=98.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccccc-------------CCCCCcceeeEEEEEEee----CCcEEEEEeCCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK-------------AGSSGVTKTCEMQRTMLK----DGQVVNVIDTPGL   79 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~T~~~~~~~~~~~----~~~~~~liDTPG~   79 (259)
                      ...++|+++|..++|||||+.+|+........             ....+.|.......+.+.    .+..+.||||||.
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            35679999999999999999999753211000             011244444433333322    2457999999997


Q ss_pred             CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHh
Q 024985           80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLED  159 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~  159 (259)
                      .+.       ...+..    +...+|++|+|+|++++....+...+..+.. .+    .|+++|+||+|+....   ...
T Consensus        85 ~dF-------~~~v~~----sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-~~----lpiIvViNKiDl~~a~---~~~  145 (600)
T PRK05433         85 VDF-------SYEVSR----SLAACEGALLVVDASQGVEAQTLANVYLALE-ND----LEIIPVLNKIDLPAAD---PER  145 (600)
T ss_pred             HHH-------HHHHHH----HHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-CC----CCEEEEEECCCCCccc---HHH
Confidence            542       222323    3445699999999987777776555554433 22    3899999999976431   111


Q ss_pred             hhCCCCCchHHHHHHHcCCc-EEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          160 YLGPECPKPLKEILQLCENR-RVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       160 ~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                              ...++.+.++.. .-++..++..+    .|+.+|++.|...++..
T Consensus       146 --------v~~ei~~~lg~~~~~vi~iSAktG----~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        146 --------VKQEIEDVIGIDASDAVLVSAKTG----IGIEEVLEAIVERIPPP  186 (600)
T ss_pred             --------HHHHHHHHhCCCcceEEEEecCCC----CCHHHHHHHHHHhCccc
Confidence                    112222222221 11233333332    78999999998887654

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.59  E-value=1.8e-14  Score=116.81  Aligned_cols=115  Identities=19%  Similarity=0.248  Sum_probs=74.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcc-----------------------------cccCCCCCcceeeEEEEEEeeCCcEE
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAF-----------------------------KSKAGSSGVTKTCEMQRTMLKDGQVV   71 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~-----------------------------~~~~~~~~~T~~~~~~~~~~~~~~~~   71 (259)
                      +|+++|.+++|||||+.+|+.....                             .......+.|.+.....+. ..+..+
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~-~~~~~i   79 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFE-TEKYRF   79 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEe-eCCeEE
Confidence            5899999999999999998632110                             0001123566666666555 577899


Q ss_pred             EEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHhHHHHHHHHHHHhcccccCeEEEEE
Q 024985           72 NVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-------FSEEGGAAIHSLESLFGKKVFDYMIVVF  144 (259)
Q Consensus        72 ~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ivV~  144 (259)
                      .+|||||..+           +...+......+|++|+|+|++.+       ...+....+..... ++   .+|++||+
T Consensus        80 ~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~iiivv  144 (219)
T cd01883          80 TILDAPGHRD-----------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-LG---VKQLIVAV  144 (219)
T ss_pred             EEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-cC---CCeEEEEE
Confidence            9999999532           122222334567999999999852       23334444443332 33   14899999


Q ss_pred             eCCCCCC
Q 024985          145 TGGNELE  151 (259)
Q Consensus       145 nk~D~~~  151 (259)
                      ||+|+..
T Consensus       145 NK~Dl~~  151 (219)
T cd01883         145 NKMDDVT  151 (219)
T ss_pred             Ecccccc
Confidence            9999874

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.59  E-value=3.9e-14  Score=124.86  Aligned_cols=169  Identities=14%  Similarity=0.203  Sum_probs=97.6

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCccc-ccCCCCCcceeeEEEEEEe--------------e------C-----Cc
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFK-SKAGSSGVTKTCEMQRTML--------------K------D-----GQ   69 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~-~~~~~~~~T~~~~~~~~~~--------------~------~-----~~   69 (259)
                      .++..+|+++|..++|||||+.+|.+..... ......+.|....+....+              .      +     ..
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            4566899999999999999999997642100 1111233443332211110              0      0     25


Q ss_pred             EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHhHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985           70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF-SEEGGAAIHSLESLFGKKVFDYMIVVFTGGN  148 (259)
Q Consensus        70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D  148 (259)
                      .+.||||||..           .+...+......+|++++|+|++.+. ...+...+..+.. .+.   +|+++|+||+|
T Consensus        86 ~i~liDtPG~~-----------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~D  150 (411)
T PRK04000         86 RVSFVDAPGHE-----------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKID  150 (411)
T ss_pred             EEEEEECCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEeec
Confidence            79999999942           22233333344679999999998665 5666666665543 332   37899999999


Q ss_pred             CCCCCcccHHhhhCCCCCchHHHHHHHc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          149 ELEDNDETLEDYLGPECPKPLKEILQLC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +.+.  ........     .++.++... ...+.++..++..+    .++.+|++.|...++.
T Consensus       151 l~~~--~~~~~~~~-----~i~~~l~~~~~~~~~ii~vSA~~g----~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        151 LVSK--ERALENYE-----QIKEFVKGTVAENAPIIPVSALHK----VNIDALIEAIEEEIPT  202 (411)
T ss_pred             cccc--hhHHHHHH-----HHHHHhccccCCCCeEEEEECCCC----cCHHHHHHHHHHhCCC
Confidence            8754  22211111     122222221 11122333333333    6899999999887653

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.59  E-value=3.4e-14  Score=127.23  Aligned_cols=128  Identities=12%  Similarity=0.149  Sum_probs=85.7

Q ss_pred             CCCCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCccccc--------------C-----------------CCCCccee
Q 024985            9 DSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSK--------------A-----------------GSSGVTKT   57 (259)
Q Consensus         9 ~~~~~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~--------------~-----------------~~~~~T~~   57 (259)
                      .|...+.+....+|+++|++++|||||+++|+........              .                 ...+.|.+
T Consensus        17 ~~~~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid   96 (474)
T PRK05124         17 AYLHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITID   96 (474)
T ss_pred             HHHhhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeE
Confidence            3445556677899999999999999999999755321110              0                 01244555


Q ss_pred             eEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccccc
Q 024985           58 CEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVF  137 (259)
Q Consensus        58 ~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~  137 (259)
                      .....+. .++..+.||||||..           .+...+......+|++++|+|+..++..++.+.+..+.. ++.   
T Consensus        97 ~~~~~~~-~~~~~i~~iDTPGh~-----------~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---  160 (474)
T PRK05124         97 VAYRYFS-TEKRKFIIADTPGHE-----------QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---  160 (474)
T ss_pred             eeEEEec-cCCcEEEEEECCCcH-----------HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---
Confidence            5544444 456789999999942           222222233467799999999987777666555554443 442   


Q ss_pred             CeEEEEEeCCCCCCC
Q 024985          138 DYMIVVFTGGNELED  152 (259)
Q Consensus       138 ~~~ivV~nk~D~~~~  152 (259)
                      ++++||+||+|+.+.
T Consensus       161 ~~iIvvvNKiD~~~~  175 (474)
T PRK05124        161 KHLVVAVNKMDLVDY  175 (474)
T ss_pred             CceEEEEEeeccccc
Confidence            378999999998754

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.58  E-value=4e-14  Score=124.81  Aligned_cols=166  Identities=14%  Similarity=0.191  Sum_probs=95.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccc-cCCCCCcceeeEEEEEE--------------e-----------eCCcEE
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKS-KAGSSGVTKTCEMQRTM--------------L-----------KDGQVV   71 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~-~~~~~~~T~~~~~~~~~--------------~-----------~~~~~~   71 (259)
                      +..+|+++|..++|||||+++|.+...... .....+.|....+....              .           ..+..+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            568999999999999999999986532100 00011222222211000              0           014579


Q ss_pred             EEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985           72 NVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF-SEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL  150 (259)
Q Consensus        72 ~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~  150 (259)
                      .+|||||..           .+...+......+|++++|+|++.+. ..+..+.+..+.. ++.   +|+++|+||+|+.
T Consensus        83 ~liDtPGh~-----------~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi---~~iIVvvNK~Dl~  147 (406)
T TIGR03680        83 SFVDAPGHE-----------TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGI---KNIVIVQNKIDLV  147 (406)
T ss_pred             EEEECCCHH-----------HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCC---CeEEEEEEccccC
Confidence            999999942           22233333344679999999998665 5555566665533 332   3789999999987


Q ss_pred             CCCcccHHhhhCCCCCchHHHHHHHc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          151 EDNDETLEDYLGPECPKPLKEILQLC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ..  ....+...     .+..++... ...+.++..++..+    .++.+|++.+...++
T Consensus       148 ~~--~~~~~~~~-----~i~~~l~~~~~~~~~ii~vSA~~g----~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       148 SK--EKALENYE-----EIKEFVKGTVAENAPIIPVSALHN----ANIDALLEAIEKFIP  196 (406)
T ss_pred             CH--HHHHHHHH-----HHHhhhhhcccCCCeEEEEECCCC----CChHHHHHHHHHhCC
Confidence            54  22211111     122222221 11223344443333    689999999988665

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.58  E-value=4.6e-14  Score=108.65  Aligned_cols=153  Identities=20%  Similarity=0.192  Sum_probs=89.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|.+|||||||++.++...... ...+.+.  .. ...+. .++  ..+.+|||+|....         .     
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~-~~~~~~~--~~-~~~i~-~~~~~~~l~i~D~~g~~~~---------~-----   61 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQ-LESPEGG--RF-KKEVL-VDGQSHLLLIRDEGGAPDA---------Q-----   61 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCC-CCCCCcc--ce-EEEEE-ECCEEEEEEEEECCCCCch---------h-----
Confidence            379999999999999999887654321 1111111  11 11122 344  46889999996420         1     


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                        .+..+|++++|+|.+++-+... ..+++.+..... ....|+++|.||.|+.......+.       ....+.+.+..
T Consensus        62 --~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~~~v~-------~~~~~~~~~~~  131 (158)
T cd04103          62 --FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAISESNPRVID-------DARARQLCADM  131 (158)
T ss_pred             --HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhhhcCCcccC-------HHHHHHHHHHh
Confidence              1245799999999996655554 455555554322 123499999999997432111111       11223344332


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      + .+.+|..++..+    .++.+++..+.+
T Consensus       132 ~-~~~~~e~SAk~~----~~i~~~f~~~~~  156 (158)
T cd04103         132 K-RCSYYETCATYG----LNVERVFQEAAQ  156 (158)
T ss_pred             C-CCcEEEEecCCC----CCHHHHHHHHHh
Confidence            2 234555565544    789999987754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.58  E-value=4.9e-14  Score=128.93  Aligned_cols=116  Identities=18%  Similarity=0.281  Sum_probs=82.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc-cccc-------------CCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRA-FKSK-------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD   85 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~-~~~~-------------~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~   85 (259)
                      ++|+++|..++|||||+++|+.... +...             ....+.|.......+. +.+..+.||||||..+    
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~-~~~~kinlIDTPGh~D----   76 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR-YNGTKINIVDTPGHAD----   76 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEE-ECCEEEEEEECCCHHH----
Confidence            5899999999999999999985321 1110             0123556655555555 5678999999999643    


Q ss_pred             hHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           86 SEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                             +...+..+...+|++++|+|+..+...+...++..+.. .+.    |++||+||+|+...
T Consensus        77 -------F~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~-~~i----p~IVviNKiD~~~a  131 (594)
T TIGR01394        77 -------FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE-LGL----KPIVVINKIDRPSA  131 (594)
T ss_pred             -------HHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH-CCC----CEEEEEECCCCCCc
Confidence                   22222334456699999999987777888778777765 343    88999999998643

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.58  E-value=1.3e-14  Score=125.37  Aligned_cols=133  Identities=21%  Similarity=0.256  Sum_probs=95.2

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHH
Q 024985           12 PTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSK   91 (259)
Q Consensus        12 ~~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~   91 (259)
                      +++...+.++++|+|.||+|||||+|.++...+   .+.+.+.|+..-+.+...+....|.+|||||+.+.......+. 
T Consensus       161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradv---evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~I-  236 (620)
T KOG1490|consen  161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD---EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNII-  236 (620)
T ss_pred             CCCCCCCcCeEEEecCCCCCcHhhccccccccc---ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHH-
Confidence            567788899999999999999999999997774   4455666666666665556667999999999987543222111 


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCC--CCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           92 EIVKCIGMAKDGIHAVLLVFSVR--NRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~d~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ++......+.-. -+|||++|++  .+.+..+ ..+++.++.+|..   +|+|+|+||+|.+.+
T Consensus       237 EmqsITALAHLr-aaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~  296 (620)
T KOG1490|consen  237 EMQIITALAHLR-SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRP  296 (620)
T ss_pred             HHHHHHHHHHhh-hhheeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCc
Confidence            111111111111 4789999997  4566544 6788888888874   699999999999876

>PRK00007 elongation factor G; Reviewed

Probab=99.58  E-value=4.2e-14  Score=132.30  Aligned_cols=121  Identities=18%  Similarity=0.269  Sum_probs=86.3

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHh---CCCcccccC-------------CCCCcceeeEEEEEEeeCCcEEEEEeCCC
Q 024985           15 PSNAERTLVLVGRTGNGKSATGNSIL---GRRAFKSKA-------------GSSGVTKTCEMQRTMLKDGQVVNVIDTPG   78 (259)
Q Consensus        15 ~~~~~~~I~l~G~~g~GKSslin~l~---~~~~~~~~~-------------~~~~~T~~~~~~~~~~~~~~~~~liDTPG   78 (259)
                      .....++|+++|++++|||||+|+|+   |........             ...+.|.+.....+. ..+..+++|||||
T Consensus         6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~-~~~~~~~liDTPG   84 (693)
T PRK00007          6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKDHRINIIDTPG   84 (693)
T ss_pred             cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEE-ECCeEEEEEeCCC
Confidence            34567899999999999999999997   321110000             123556655555555 4678999999999


Q ss_pred             CCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           79 LFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      +.+       ...++..    +...+|++++|+|+..+...++..++..+.. .+.    |+++++||+|+...
T Consensus        85 ~~~-------f~~ev~~----al~~~D~~vlVvda~~g~~~qt~~~~~~~~~-~~~----p~iv~vNK~D~~~~  142 (693)
T PRK00007         85 HVD-------FTIEVER----SLRVLDGAVAVFDAVGGVEPQSETVWRQADK-YKV----PRIAFVNKMDRTGA  142 (693)
T ss_pred             cHH-------HHHHHHH----HHHHcCEEEEEEECCCCcchhhHHHHHHHHH-cCC----CEEEEEECCCCCCC
Confidence            643       1223333    3345599999999988899999888888776 343    88999999998854

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.58  E-value=1.9e-13  Score=104.01  Aligned_cols=157  Identities=15%  Similarity=0.198  Sum_probs=105.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccc-----cCCCCC---cceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKS-----KAGSSG---VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVS   90 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~-----~~~~~~---~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~   90 (259)
                      ..+|+++|+.|+||||++.++........     ..+..+   +|.-..+.......+..+.++||||..          
T Consensus        10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~----------   79 (187)
T COG2229          10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQE----------   79 (187)
T ss_pred             ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcH----------
Confidence            47999999999999999999987764222     222233   444455555554555789999999943          


Q ss_pred             HHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHH
Q 024985           91 KEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLK  170 (259)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~  170 (259)
                       ++.-++....+++..+++++|.+...+.....+++.+.....    .|++|.+||.|+.+.           ...+.++
T Consensus        80 -RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a-----------~ppe~i~  143 (187)
T COG2229          80 -RFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDA-----------LPPEKIR  143 (187)
T ss_pred             -HHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCC-----------CCHHHHH
Confidence             455555556678899999999986666666777777766432    399999999999865           2233455


Q ss_pred             HHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985          171 EILQLCENRRVLFDNKTKDAATRTEQVGKLISLVN  205 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~  205 (259)
                      +.+..+.....++...+...    .+..+.+..+.
T Consensus       144 e~l~~~~~~~~vi~~~a~e~----~~~~~~L~~ll  174 (187)
T COG2229         144 EALKLELLSVPVIEIDATEG----EGARDQLDVLL  174 (187)
T ss_pred             HHHHhccCCCceeeeecccc----hhHHHHHHHHH
Confidence            55655532334444444332    45666555543

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.58  E-value=3.6e-14  Score=125.05  Aligned_cols=117  Identities=15%  Similarity=0.148  Sum_probs=80.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccc--------------cC-----------------CCCCcceeeEEEEEEeeCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKS--------------KA-----------------GSSGVTKTCEMQRTMLKDG   68 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~--------------~~-----------------~~~~~T~~~~~~~~~~~~~   68 (259)
                      ++|+++|+.++|||||+++|+.......              +.                 ...+.|.+.....+. .++
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~-~~~   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS-TDK   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc-cCC
Confidence            4799999999999999999974431110              00                 012455555555554 466


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGN  148 (259)
Q Consensus        69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D  148 (259)
                      ..+.||||||..           .+...+......+|++|+|+|+..++..++.+.+..+.. ++.   ++++||+||+|
T Consensus        80 ~~~~liDtPGh~-----------~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~-~~~---~~iivviNK~D  144 (406)
T TIGR02034        80 RKFIVADTPGHE-----------QYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASL-LGI---RHVVLAVNKMD  144 (406)
T ss_pred             eEEEEEeCCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHH-cCC---CcEEEEEEecc
Confidence            799999999943           232223334557799999999987887777766665554 342   37899999999


Q ss_pred             CCCC
Q 024985          149 ELED  152 (259)
Q Consensus       149 ~~~~  152 (259)
                      ....
T Consensus       145 ~~~~  148 (406)
T TIGR02034       145 LVDY  148 (406)
T ss_pred             cccc
Confidence            8754

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK10218 GTP-binding protein; Provisional

Probab=99.57  E-value=7e-14  Score=127.83  Aligned_cols=118  Identities=19%  Similarity=0.243  Sum_probs=82.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc-cccc-------------CCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA-FKSK-------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~-~~~~-------------~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~   83 (259)
                      ..++|+++|..++|||||+++|+.... +...             ....+.|.......+. .++..+.+|||||..+..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~-~~~~~inliDTPG~~df~   82 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIK-WNDYRINIVDTPGHADFG   82 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEe-cCCEEEEEEECCCcchhH
Confidence            457999999999999999999986321 1111             1123455555544444 467899999999976431


Q ss_pred             CChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           84 ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                                 ..+..++..+|++|+|+|+..+....+...+..+.. .+.    |.+||+||+|....
T Consensus        83 -----------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~-~gi----p~IVviNKiD~~~a  135 (607)
T PRK10218         83 -----------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA-YGL----KPIVVINKVDRPGA  135 (607)
T ss_pred             -----------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH-cCC----CEEEEEECcCCCCC
Confidence                       122233456799999999987777777777776655 343    88999999997643

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.57  E-value=3e-14  Score=132.28  Aligned_cols=122  Identities=11%  Similarity=0.115  Sum_probs=81.6

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCcccc--------------cC-----------------CCCCcceeeEEEEE
Q 024985           15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKS--------------KA-----------------GSSGVTKTCEMQRT   63 (259)
Q Consensus        15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~--------------~~-----------------~~~~~T~~~~~~~~   63 (259)
                      ...+..+|+++|++++|||||+|+|+.......              +.                 ...+.|.+.....+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            344568999999999999999999986542111              00                 01234444444444


Q ss_pred             EeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEE
Q 024985           64 MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVV  143 (259)
Q Consensus        64 ~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV  143 (259)
                      . .++..+.||||||..           .+...+......+|++++|+|+..++..++.+.+..+.. ++.   ++++||
T Consensus       100 ~-~~~~~~~liDtPG~~-----------~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~-~~~---~~iivv  163 (632)
T PRK05506        100 A-TPKRKFIVADTPGHE-----------QYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASL-LGI---RHVVLA  163 (632)
T ss_pred             c-cCCceEEEEECCChH-----------HHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHH-hCC---CeEEEE
Confidence            4 466789999999943           222222234557799999999987777766666665544 342   388999


Q ss_pred             EeCCCCCCC
Q 024985          144 FTGGNELED  152 (259)
Q Consensus       144 ~nk~D~~~~  152 (259)
                      +||+|+.+.
T Consensus       164 vNK~D~~~~  172 (632)
T PRK05506        164 VNKMDLVDY  172 (632)
T ss_pred             EEecccccc
Confidence            999998753

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.56  E-value=7.2e-14  Score=130.86  Aligned_cols=121  Identities=18%  Similarity=0.209  Sum_probs=85.2

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCccccc---CC-------------CCCcceeeEEEEEEeeCCcEEEEEeCCC
Q 024985           15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSK---AG-------------SSGVTKTCEMQRTMLKDGQVVNVIDTPG   78 (259)
Q Consensus        15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~---~~-------------~~~~T~~~~~~~~~~~~~~~~~liDTPG   78 (259)
                      .....++|+++|++|+|||||+|+|+........   ..             ..+.|.......+. .++..+.+|||||
T Consensus         6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~-~~~~~i~liDTPG   84 (689)
T TIGR00484         6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVF-WKGHRINIIDTPG   84 (689)
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEE-ECCeEEEEEECCC
Confidence            3456789999999999999999999743211100   00             13556556555555 4678999999999


Q ss_pred             CCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           79 LFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      +.+..       .....    +...+|++++|+|+..+....+..++..+.. .+    .|+++|+||+|+...
T Consensus        85 ~~~~~-------~~~~~----~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~-~~----~p~ivviNK~D~~~~  142 (689)
T TIGR00484        85 HVDFT-------VEVER----SLRVLDGAVAVLDAVGGVQPQSETVWRQANR-YE----VPRIAFVNKMDKTGA  142 (689)
T ss_pred             Ccchh-------HHHHH----HHHHhCEEEEEEeCCCCCChhHHHHHHHHHH-cC----CCEEEEEECCCCCCC
Confidence            86531       12222    3345599999999987888887777776655 33    399999999998754

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.56  E-value=3.9e-13  Score=100.04  Aligned_cols=159  Identities=16%  Similarity=0.180  Sum_probs=102.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ...+|+++|..||||||+++.+.+...     ....+|...++.... .++..+.+||.-|-           ..+..+.
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~-~~~~~L~iwDvGGq-----------~~lr~~W   77 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLE-YKGYTLNIWDVGGQ-----------KTLRSYW   77 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEE-ecceEEEEEEcCCc-----------chhHHHH
Confidence            368999999999999999999998883     234456666666555 67889999999993           2556666


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ..++...|++|+|+|..++...++  ....|.+.+...  +..|++|+.||.|....  -+.+++..   .-.+..+.+.
T Consensus        78 ~nYfestdglIwvvDssD~~r~~e--~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~~~~i~~---~~~L~~l~ks  150 (185)
T KOG0073|consen   78 KNYFESTDGLIWVVDSSDRMRMQE--CKQELTELLVEERLAGAPLLVLANKQDLPGA--LSLEEISK---ALDLEELAKS  150 (185)
T ss_pred             HHhhhccCeEEEEEECchHHHHHH--HHHHHHHHHhhhhhcCCceEEEEecCcCccc--cCHHHHHH---hhCHHHhccc
Confidence            677788899999999875443333  233333333211  23599999999998744  23333221   1245666666


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      +..+.+  ..++..+    +++.+-++++..
T Consensus       151 ~~~~l~--~cs~~tg----e~l~~gidWL~~  175 (185)
T KOG0073|consen  151 HHWRLV--KCSAVTG----EDLLEGIDWLCD  175 (185)
T ss_pred             cCceEE--EEecccc----ccHHHHHHHHHH
Confidence            665544  4444333    344444444433

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.55  E-value=9.2e-14  Score=101.55  Aligned_cols=160  Identities=18%  Similarity=0.219  Sum_probs=102.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      .+.+++|.+|+|||||+-.+.....-.+-..+.|.  +..+..+.. .....+.||||+|           .+.+.....
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGv--DfkirTv~i~G~~VkLqIwDtAG-----------qErFrtits   75 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGV--DFKIRTVDINGDRVKLQIWDTAG-----------QERFRTITS   75 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccccceEEEeee--eEEEEEeecCCcEEEEEEeeccc-----------HHHHHHHHH
Confidence            46788999999999999888765431110111122  222222332 2224799999999           346666667


Q ss_pred             hcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      .++++.|++++|+|+++.-+.. -.+||+.+.+.+.   ..|-++|.||.|..+.  ..+.       ....+......+
T Consensus        76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd---sv~~vLVGNK~d~~~R--rvV~-------t~dAr~~A~~mg  143 (198)
T KOG0079|consen   76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD---SVPKVLVGNKNDDPER--RVVD-------TEDARAFALQMG  143 (198)
T ss_pred             HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc---cccceecccCCCCccc--eeee-------hHHHHHHHHhcC
Confidence            7889999999999999654443 3678888877554   2488999999997754  1111       223334443333


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                        +-.|..+++..    .+++..+..|.+.+.+
T Consensus       144 --ie~FETSaKe~----~NvE~mF~cit~qvl~  170 (198)
T KOG0079|consen  144 --IELFETSAKEN----ENVEAMFHCITKQVLQ  170 (198)
T ss_pred             --chheehhhhhc----ccchHHHHHHHHHHHH
Confidence              44677776554    6788877777665543

>PLN00023 GTP-binding protein; Provisional

Probab=99.54  E-value=1.1e-13  Score=116.26  Aligned_cols=124  Identities=15%  Similarity=0.131  Sum_probs=77.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe------------eCCcEEEEEeCCCCCCCCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML------------KDGQVVNVIDTPGLFDSSAD   85 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~------------~~~~~~~liDTPG~~~~~~~   85 (259)
                      ...+|+++|..|||||||++.+++.........+.+.+.......+..            .....+.||||+|-.     
T Consensus        20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE-----   94 (334)
T PLN00023         20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE-----   94 (334)
T ss_pred             cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh-----
Confidence            458999999999999999999998764222112222222222111110            012468999999943     


Q ss_pred             hHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc----------cccCeEEEEEeCCCCCCC
Q 024985           86 SEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK----------KVFDYMIVVFTGGNELED  152 (259)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~----------~~~~~~ivV~nk~D~~~~  152 (259)
                            .+..+....+.+++++|+|+|++++-+... ..+++.+....+.          ....|++||.||+|+...
T Consensus        95 ------rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~  166 (334)
T PLN00023         95 ------RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK  166 (334)
T ss_pred             ------hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence                  333444556788999999999985544433 3455555553210          012489999999998643

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=2.9e-13  Score=118.22  Aligned_cols=161  Identities=14%  Similarity=0.166  Sum_probs=121.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .++.|-++|....|||||+.+|-+..+...  ...|.|+.+..+.+....|..++|.||||.-           .|..+-
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~--E~GGITQhIGAF~V~~p~G~~iTFLDTPGHa-----------AF~aMR  218 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAG--EAGGITQHIGAFTVTLPSGKSITFLDTPGHA-----------AFSAMR  218 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehh--hcCCccceeceEEEecCCCCEEEEecCCcHH-----------HHHHHH
Confidence            578999999999999999999999988443  4578999999998887889999999999942           555665


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccH-HhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETL-EDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~-~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+.-.|++++|+.++++..+++.+.+...+.     ...|++|.+||+|..+.+++.. ++++.+      --..+.+
T Consensus       219 aRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~-----A~VpiVvAinKiDkp~a~pekv~~eL~~~------gi~~E~~  287 (683)
T KOG1145|consen  219 ARGANVTDIVVLVVAADDGVMPQTLEAIKHAKS-----ANVPIVVAINKIDKPGANPEKVKRELLSQ------GIVVEDL  287 (683)
T ss_pred             hccCccccEEEEEEEccCCccHhHHHHHHHHHh-----cCCCEEEEEeccCCCCCCHHHHHHHHHHc------CccHHHc
Confidence            666777899999999999999998888877665     2349999999999876543222 222221      1125667


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      |+.+-.+.-++..+    .++..|.+.+.-
T Consensus       288 GGdVQvipiSAl~g----~nl~~L~eaill  313 (683)
T KOG1145|consen  288 GGDVQVIPISALTG----ENLDLLEEAILL  313 (683)
T ss_pred             CCceeEEEeecccC----CChHHHHHHHHH
Confidence            77666666665544    788888776543

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.53  E-value=8.1e-14  Score=112.67  Aligned_cols=115  Identities=17%  Similarity=0.240  Sum_probs=75.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccC--------------CCCCcceeeEEEEEEee---------CCcEEEEEeC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKA--------------GSSGVTKTCEMQRTMLK---------DGQVVNVIDT   76 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~--------------~~~~~T~~~~~~~~~~~---------~~~~~~liDT   76 (259)
                      ++|+++|..++|||||+.+|+.........              ...+.|.........+.         .+..+.+|||
T Consensus         1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence            479999999999999999997543211100              01122322221111211         1457999999


Q ss_pred             CCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985           77 PGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL  150 (259)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~  150 (259)
                      ||..+.           ......+...+|++++|+|+..+.+..+...+..... .+    .|+++|+||+|+.
T Consensus        81 PG~~~f-----------~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~-~~----~p~ilviNKiD~~  138 (222)
T cd01885          81 PGHVDF-----------SSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK-ER----VKPVLVINKIDRL  138 (222)
T ss_pred             CCcccc-----------HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECCCcc
Confidence            997642           2222334456699999999998888887777776554 23    3899999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.53  E-value=1.4e-13  Score=122.30  Aligned_cols=142  Identities=16%  Similarity=0.198  Sum_probs=90.6

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcc--c---------------------------ccCCCCCcceeeEEEEEEee
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAF--K---------------------------SKAGSSGVTKTCEMQRTMLK   66 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~--~---------------------------~~~~~~~~T~~~~~~~~~~~   66 (259)
                      .++..+|+++|..++|||||+.+|+.....  .                           ......+.|.+.....+. .
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~-~   82 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-T   82 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc-c
Confidence            356689999999999999999988642100  0                           000123566666655555 5


Q ss_pred             CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-------CHhHHHHHHHHHHHhcccccCe
Q 024985           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF-------SEEGGAAIHSLESLFGKKVFDY  139 (259)
Q Consensus        67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-------~~~~~~~l~~l~~~~~~~~~~~  139 (259)
                      ++..+.||||||..           .+...+......+|++++|+|+..+.       ..+..+.+..+.. +|.   ++
T Consensus        83 ~~~~i~lIDtPGh~-----------~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi---~~  147 (446)
T PTZ00141         83 PKYYFTIIDAPGHR-----------DFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGV---KQ  147 (446)
T ss_pred             CCeEEEEEECCChH-----------HHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCC---Ce
Confidence            67799999999943           33333444456779999999998664       3566667776555 453   25


Q ss_pred             EEEEEeCCCCC--CCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985          140 MIVVFTGGNEL--EDNDETLEDYLGPECPKPLKEILQLCEN  178 (259)
Q Consensus       140 ~ivV~nk~D~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (259)
                      ++|++||+|..  +.+...+++...     .++.++...+.
T Consensus       148 iiv~vNKmD~~~~~~~~~~~~~i~~-----~i~~~l~~~g~  183 (446)
T PTZ00141        148 MIVCINKMDDKTVNYSQERYDEIKK-----EVSAYLKKVGY  183 (446)
T ss_pred             EEEEEEccccccchhhHHHHHHHHH-----HHHHHHHhcCC
Confidence            78999999943  222233343332     45566665543

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.53  E-value=2.9e-13  Score=115.82  Aligned_cols=169  Identities=14%  Similarity=0.155  Sum_probs=101.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCccccc--------------CCCCC---cceeeEE---EEEEeeCC----cEE
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSK--------------AGSSG---VTKTCEM---QRTMLKDG----QVV   71 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~--------------~~~~~---~T~~~~~---~~~~~~~~----~~~   71 (259)
                      ..+...|+++|+.++|||||||++.+.-+.+.-              .+..|   +|+++.+   ..+.....    .++
T Consensus        14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V   93 (492)
T TIGR02836        14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV   93 (492)
T ss_pred             hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence            356789999999999999999999998322211              12345   6777776   33333333    589


Q ss_pred             EEEeCCCCCCCCCChHHHHHH--------------HHH-----HHhhcCCCccEEEEEE-eCC------CCCCHhHHHHH
Q 024985           72 NVIDTPGLFDSSADSEFVSKE--------------IVK-----CIGMAKDGIHAVLLVF-SVR------NRFSEEGGAAI  125 (259)
Q Consensus        72 ~liDTPG~~~~~~~~~~~~~~--------------~~~-----~~~~~~~~~~~il~v~-d~~------~~~~~~~~~~l  125 (259)
                      ++|||+|+.+...-...-...              |..     ..+.....+++.|+|. |.+      ..+...+.+++
T Consensus        94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i  173 (492)
T TIGR02836        94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI  173 (492)
T ss_pred             EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence            999999998543221100000              000     1111223668888888 774      35667778888


Q ss_pred             HHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHH
Q 024985          126 HSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLV  204 (259)
Q Consensus       126 ~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i  204 (259)
                      +.|++. ++    |+++|+|+.|-..+  .+         ....+.+.+.++..+..++...-.    ...+..+|+.+
T Consensus       174 ~eLk~~-~k----PfiivlN~~dp~~~--et---------~~l~~~l~eky~vpvl~v~c~~l~----~~DI~~il~~v  232 (492)
T TIGR02836       174 EELKEL-NK----PFIILLNSTHPYHP--ET---------EALRQELEEKYDVPVLAMDVESMR----ESDILSVLEEV  232 (492)
T ss_pred             HHHHhc-CC----CEEEEEECcCCCCc--hh---------HHHHHHHHHHhCCceEEEEHHHcC----HHHHHHHHHHH
Confidence            888873 43    99999999995433  11         112234445555554555543221    24555555543

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PRK12739 elongation factor G; Reviewed

Probab=99.53  E-value=1.9e-13  Score=127.95  Aligned_cols=119  Identities=20%  Similarity=0.301  Sum_probs=85.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccccc---C-------------CCCCcceeeEEEEEEeeCCcEEEEEeCCCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK---A-------------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF   80 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~---~-------------~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~   80 (259)
                      ...++|+++|+.++|||||+|+|+........   .             ...+.|.......+. .++..+++|||||+.
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~   84 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKGHRINIIDTPGHV   84 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEE-ECCEEEEEEcCCCHH
Confidence            45689999999999999999999743210000   0             123566666555555 478899999999964


Q ss_pred             CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      +       ...+    +..+...+|++|+|+|+..+....+..++..+.. .+.    |+++++||+|+...
T Consensus        85 ~-------f~~e----~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~-~~~----p~iv~iNK~D~~~~  140 (691)
T PRK12739         85 D-------FTIE----VERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK-YGV----PRIVFVNKMDRIGA  140 (691)
T ss_pred             H-------HHHH----HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH-cCC----CEEEEEECCCCCCC
Confidence            3       1222    3334445699999999988888888888887765 343    89999999998854

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=3.5e-13  Score=98.44  Aligned_cols=161  Identities=12%  Similarity=0.106  Sum_probs=100.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ..+++++|.+.+|||||+.+.++....+.-+++.|...+...  +... ....+.+|||.|..           .+....
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKT--vyr~~kRiklQiwDTagqE-----------ryrtiT   87 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKT--VYRSDKRIKLQIWDTAGQE-----------RYRTIT   87 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeE--eeecccEEEEEEEecccch-----------hhhHHH
Confidence            579999999999999999999988753333333333333331  1111 12378999999943           334444


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+++++++|+++|+++.-+... ..+...++-..  .-+.|+|+|.||||+-.+  ..+       ..+.-+.++.++
T Consensus        88 TayyRgamgfiLmyDitNeeSf~svqdw~tqIktys--w~naqvilvgnKCDmd~e--Rvi-------s~e~g~~l~~~L  156 (193)
T KOG0093|consen   88 TAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYS--WDNAQVILVGNKCDMDSE--RVI-------SHERGRQLADQL  156 (193)
T ss_pred             HHHhhccceEEEEEecCCHHHHHHHHHHHHHheeee--ccCceEEEEecccCCccc--eee-------eHHHHHHHHHHh
Confidence            557889999999999985433322 23333333321  123499999999997654  111       123455677777


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      |..  +|..+++..    -++..+++.+...+-
T Consensus       157 Gfe--fFEtSaK~N----inVk~~Fe~lv~~Ic  183 (193)
T KOG0093|consen  157 GFE--FFETSAKEN----INVKQVFERLVDIIC  183 (193)
T ss_pred             ChH--Hhhhccccc----ccHHHHHHHHHHHHH
Confidence            754  566665544    567777776655554

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.51  E-value=3.7e-14  Score=100.79  Aligned_cols=142  Identities=21%  Similarity=0.291  Sum_probs=90.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      .+|+++|+.|+|||||.++|-|.+.....      |+-+.+      ++.  -.|||||.+..       ...+.+.+..
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK------TQAve~------~d~--~~IDTPGEy~~-------~~~~Y~aL~t   60 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK------TQAVEF------NDK--GDIDTPGEYFE-------HPRWYHALIT   60 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhhhcc------cceeec------cCc--cccCCchhhhh-------hhHHHHHHHH
Confidence            58999999999999999999998853322      222221      111  26999997743       2245555555


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR  179 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (259)
                      ....+|++++|..++++-+...        ..|-....+|+|-|+||.|+.++  ..++         ..+..+...|..
T Consensus        61 t~~dadvi~~v~~and~~s~f~--------p~f~~~~~k~vIgvVTK~DLaed--~dI~---------~~~~~L~eaGa~  121 (148)
T COG4917          61 TLQDADVIIYVHAANDPESRFP--------PGFLDIGVKKVIGVVTKADLAED--ADIS---------LVKRWLREAGAE  121 (148)
T ss_pred             HhhccceeeeeecccCccccCC--------cccccccccceEEEEecccccch--HhHH---------HHHHHHHHcCCc
Confidence            6678899999998874432211        11222233489999999999865  3332         344555566643


Q ss_pred             EEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          180 RVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                       .+|..+..++    +++++|++.+..
T Consensus       122 -~IF~~s~~d~----~gv~~l~~~L~~  143 (148)
T COG4917         122 -PIFETSAVDN----QGVEELVDYLAS  143 (148)
T ss_pred             -ceEEEeccCc----ccHHHHHHHHHh
Confidence             3444444333    789999888765

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.51  E-value=1.7e-13  Score=112.94  Aligned_cols=90  Identities=18%  Similarity=0.239  Sum_probs=64.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ..-+++|+|.|++|||||+|.|+|...-.  .+.+.+|..+..... .++|..+.++|+||+.....+...-.+++..  
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~sev--a~y~FTTl~~VPG~l-~Y~ga~IQild~Pgii~gas~g~grG~~vls--  136 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEV--ADYPFTTLEPVPGML-EYKGAQIQLLDLPGIIEGASSGRGRGRQVLS--  136 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCccc--cccCceecccccceE-eecCceEEEEcCcccccCcccCCCCcceeee--
Confidence            34689999999999999999999988522  223444444444433 4789999999999998765543332333333  


Q ss_pred             hhcCCCccEEEEEEeCC
Q 024985           98 GMAKDGIHAVLLVFSVR  114 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~  114 (259)
                        ..+.||++++|+|+.
T Consensus       137 --v~R~ADlIiiVld~~  151 (365)
T COG1163         137 --VARNADLIIIVLDVF  151 (365)
T ss_pred             --eeccCCEEEEEEecC
Confidence              456779999999987

>cd04167 Snu114p Snu114p subfamily

Probab=99.51  E-value=1.3e-13  Score=111.42  Aligned_cols=115  Identities=19%  Similarity=0.240  Sum_probs=71.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCccccc-----------------CCCCCcceeeEEEEEEe----eCCcEEEEEeCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSK-----------------AGSSGVTKTCEMQRTML----KDGQVVNVIDTPG   78 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~-----------------~~~~~~T~~~~~~~~~~----~~~~~~~liDTPG   78 (259)
                      ++|+++|.+|+|||||+++|+........                 ....+.|.........+    .....+.+|||||
T Consensus         1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG   80 (213)
T cd04167           1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG   80 (213)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence            36999999999999999999865422110                 00112222222222211    1235799999999


Q ss_pred             CCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985           79 LFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL  150 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~  150 (259)
                      ..+.       ....    ......+|++++|+|+....+..+..++..+.. .+    .|+++|+||+|+.
T Consensus        81 ~~~f-------~~~~----~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~-~~----~p~iiviNK~D~~  136 (213)
T cd04167          81 HVNF-------MDEV----AAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL-EG----LPIVLVINKIDRL  136 (213)
T ss_pred             Ccch-------HHHH----HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECcccC
Confidence            7642       1122    223346699999999986666655555554432 12    4999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.50  E-value=4.5e-13  Score=121.08  Aligned_cols=119  Identities=15%  Similarity=0.212  Sum_probs=78.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC--------------------CCCcceeeEEEEEEeeCCcEEEEEeC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG--------------------SSGVTKTCEMQRTMLKDGQVVNVIDT   76 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~--------------------~~~~T~~~~~~~~~~~~~~~~~liDT   76 (259)
                      ...++|+++|.+|+|||||+++|+..........                    ..+.|.......+. .++..+++|||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~-~~~~~inliDT   86 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFP-YRDCLINLLDT   86 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEE-ECCEEEEEEEC
Confidence            4568999999999999999999963111000000                    01222223333344 46788999999


Q ss_pred             CCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           77 PGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ||..+.       .......    +..+|++|+|+|+..+.......+++.... .+    .|+++++||+|....
T Consensus        87 PG~~df-------~~~~~~~----l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~----iPiiv~iNK~D~~~a  146 (526)
T PRK00741         87 PGHEDF-------SEDTYRT----LTAVDSALMVIDAAKGVEPQTRKLMEVCRL-RD----TPIFTFINKLDRDGR  146 (526)
T ss_pred             CCchhh-------HHHHHHH----HHHCCEEEEEEecCCCCCHHHHHHHHHHHh-cC----CCEEEEEECCccccc
Confidence            997542       1222222    345699999999987777776666665544 33    399999999997654

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.50  E-value=1.7e-12  Score=110.27  Aligned_cols=87  Identities=18%  Similarity=0.146  Sum_probs=57.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe--------------------e---CCcEEEEEeCCC
Q 024985           22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML--------------------K---DGQVVNVIDTPG   78 (259)
Q Consensus        22 I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~--------------------~---~~~~~~liDTPG   78 (259)
                      |+++|.+|||||||+|+|++.... . ...+.+|..+.......                    .   ...++.+|||||
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~-~-~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG   78 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVE-I-ANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG   78 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCc-c-cCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence            579999999999999999988742 1 22344554444332221                    1   224799999999


Q ss_pred             CCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985           79 LFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR  114 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (259)
                      +.........+...+...+    +.+|++++|+|+.
T Consensus        79 lv~ga~~~~glg~~fL~~i----r~aD~ii~Vvd~~  110 (318)
T cd01899          79 LVPGAHEGKGLGNKFLDDL----RDADALIHVVDAS  110 (318)
T ss_pred             CCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence            9654333333444554443    4559999999986

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.50  E-value=2.2e-13  Score=110.25  Aligned_cols=170  Identities=15%  Similarity=0.107  Sum_probs=93.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      +|+|+|+.||||||..+.+++...+.. ....+.|..+....+.......+.+||+||.......      .+.......
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~------~~~~~~~~i   73 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMEN------YFNSQREEI   73 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHT------THTCCHHHH
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCccccccc------cccccHHHH
Confidence            699999999999999999998765332 3345677777766665455679999999998753211      000011123


Q ss_pred             CCCccEEEEEEeCCCCCCHhHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC-C
Q 024985          101 KDGIHAVLLVFSVRNRFSEEGG-AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE-N  178 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~  178 (259)
                      ...++++|||+|+...--..+. .+...+...........+.|.+.|+|++.+  +...+.... ..+.+...+...+ .
T Consensus        74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~--~~r~~~~~~-~~~~i~~~~~~~~~~  150 (232)
T PF04670_consen   74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE--DEREEIFRD-IQQRIRDELEDLGIE  150 (232)
T ss_dssp             HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H--HHHHHHHHH-HHHHHHHHHHHTT-T
T ss_pred             HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH--HHHHHHHHH-HHHHHHHHhhhcccc
Confidence            4577999999999833233333 333334443333334589999999999865  333333321 2223444444433 2


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHH
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVN  205 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~  205 (259)
                      .+.+|.++..+     +.+-+....|.
T Consensus       151 ~~~~~~TSI~D-----~Sly~A~S~Iv  172 (232)
T PF04670_consen  151 DITFFLTSIWD-----ESLYEAWSKIV  172 (232)
T ss_dssp             SEEEEEE-TTS-----THHHHHHHHHH
T ss_pred             ceEEEeccCcC-----cHHHHHHHHHH
Confidence            46677777665     34555554443

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.49  E-value=3.7e-12  Score=103.09  Aligned_cols=119  Identities=15%  Similarity=0.110  Sum_probs=78.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      .+|+++|..|||||||++++.+........ +...................+.+|||+|.           ..+......
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq-----------~~~~~~~~~   73 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYP-PTIGNLDPAKTIEPYRRNIKLQLWDTAGQ-----------EEYRSLRPE   73 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCC-CceeeeeEEEEEEeCCCEEEEEeecCCCH-----------HHHHHHHHH
Confidence            799999999999999999999887632211 11111222221111111346899999994           355566667


Q ss_pred             cCCCccEEEEEEeCCC--CCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          100 AKDGIHAVLLVFSVRN--RFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ++.+++++++|+|.+.  +.......+...+....+.  ..|+++|.||+|+...
T Consensus        74 y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~  126 (219)
T COG1100          74 YYRGANGILIVYDSTLRESSDELTEEWLEELRELAPD--DVPILLVGNKIDLFDE  126 (219)
T ss_pred             HhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCC--CceEEEEecccccccc
Confidence            7889999999999873  2333335555566554431  2499999999999865

>cd01882 BMS1 Bms1

Probab=99.48  E-value=2.6e-12  Score=104.45  Aligned_cols=112  Identities=16%  Similarity=0.193  Sum_probs=75.5

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ..++..|+++|++|+|||||+|+|++...........+ +  ..   +....+..+.++||||..          ..+..
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~--i~---i~~~~~~~i~~vDtPg~~----------~~~l~   99 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-P--IT---VVTGKKRRLTFIECPNDI----------NAMID   99 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-c--EE---EEecCCceEEEEeCCchH----------HHHHH
Confidence            45668899999999999999999987632111111111 1  11   111356789999999832          12222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe-EEEEEeCCCCCCC
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY-MIVVFTGGNELED  152 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~nk~D~~~~  152 (259)
                      .    ...+|++++|+|+..++...+..++..+.. .|.    | +++|+||+|+...
T Consensus       100 ~----ak~aDvVllviDa~~~~~~~~~~i~~~l~~-~g~----p~vi~VvnK~D~~~~  148 (225)
T cd01882         100 I----AKVADLVLLLIDASFGFEMETFEFLNILQV-HGF----PRVMGVLTHLDLFKK  148 (225)
T ss_pred             H----HHhcCEEEEEEecCcCCCHHHHHHHHHHHH-cCC----CeEEEEEeccccCCc
Confidence            2    245699999999987788888777777765 342    6 4559999998854

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.48  E-value=6.5e-12  Score=109.80  Aligned_cols=89  Identities=20%  Similarity=0.146  Sum_probs=60.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe--------------------eC---CcEEEEEeC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML--------------------KD---GQVVNVIDT   76 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~--------------------~~---~~~~~liDT   76 (259)
                      .+|+++|.+|||||||+|+|++.....  ...+++|..+.......                    .+   ..++.++||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~--~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEI--ANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccc--cCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            579999999999999999999887522  23455555555432211                    11   136889999


Q ss_pred             CCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985           77 PGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR  114 (259)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (259)
                      ||+.........+...+...+.    .+|++++|+|+.
T Consensus        80 aGl~~ga~~g~glg~~fL~~ir----~ad~ll~Vvd~~  113 (396)
T PRK09602         80 AGLVPGAHEGRGLGNQFLDDLR----QADALIHVVDAS  113 (396)
T ss_pred             CCcCCCccchhhHHHHHHHHHH----HCCEEEEEEeCC
Confidence            9997654333445555555444    459999999985

>TIGR00503 prfC peptide chain release factor 3

Probab=99.48  E-value=7.2e-13  Score=119.82  Aligned_cols=119  Identities=14%  Similarity=0.170  Sum_probs=77.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccc--c-CC-----------------CCCcceeeEEEEEEeeCCcEEEEEeC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKS--K-AG-----------------SSGVTKTCEMQRTMLKDGQVVNVIDT   76 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~--~-~~-----------------~~~~T~~~~~~~~~~~~~~~~~liDT   76 (259)
                      ...++|+++|.+|+|||||+++|+-......  + +.                 ..+.|.......+. ..+..+.+|||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~-~~~~~inliDT   87 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFP-YRDCLVNLLDT   87 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEe-eCCeEEEEEEC
Confidence            4568999999999999999999853211100  0 00                 01223333333344 46789999999


Q ss_pred             CCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           77 PGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ||..+.       .....    .+...+|++|+|+|+..++......+++.+.. .+    .|+++++||+|+...
T Consensus        88 PG~~df-------~~~~~----~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~----~PiivviNKiD~~~~  147 (527)
T TIGR00503        88 PGHEDF-------SEDTY----RTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-RD----TPIFTFMNKLDRDIR  147 (527)
T ss_pred             CChhhH-------HHHHH----HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-cC----CCEEEEEECccccCC
Confidence            996431       12222    23446699999999987777776666665543 23    399999999998643

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK13351 elongation factor G; Reviewed

Probab=99.48  E-value=7e-13  Score=124.42  Aligned_cols=119  Identities=15%  Similarity=0.193  Sum_probs=80.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccc-------cC---------CCCCcceeeEEEEEEeeCCcEEEEEeCCCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKS-------KA---------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF   80 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~-------~~---------~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~   80 (259)
                      ...++|+++|..|+|||||+++|+.......       +.         ...+.|.......+. ..+..+.+|||||..
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~   84 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCD-WDNHRINLIDTPGHI   84 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEE-ECCEEEEEEECCCcH
Confidence            3568999999999999999999974321100       00         012334444444444 467899999999965


Q ss_pred             CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      +.           ......+...+|++++|+|++.+........+..+.. .+    .|+++|+||+|+...
T Consensus        85 df-----------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~-~~----~p~iiviNK~D~~~~  140 (687)
T PRK13351         85 DF-----------TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR-YG----IPRLIFINKMDRVGA  140 (687)
T ss_pred             HH-----------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh-cC----CCEEEEEECCCCCCC
Confidence            31           1222333456699999999987777777777766554 23    399999999998754

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.47  E-value=9.2e-13  Score=116.94  Aligned_cols=168  Identities=11%  Similarity=0.163  Sum_probs=100.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccccc-CCCCCcceeeEEEEE---------------Eee--------------
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK-AGSSGVTKTCEMQRT---------------MLK--------------   66 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~-~~~~~~T~~~~~~~~---------------~~~--------------   66 (259)
                      .+..+|+++|...+|||||+.+|+|.....-. .-..+.|.+..+...               ...              
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            45689999999999999999999986532211 111233322221110               000              


Q ss_pred             ---CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CCHhHHHHHHHHHHHhcccccCeEEE
Q 024985           67 ---DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-FSEEGGAAIHSLESLFGKKVFDYMIV  142 (259)
Q Consensus        67 ---~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~iv  142 (259)
                         ....+.||||||..           .+.+.+......+|++++|+|+..+ ...+..+.+..+. .++.   ++++|
T Consensus       112 ~~~~~~~i~~IDtPGH~-----------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~lgi---~~iIV  176 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHD-----------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IMKL---KHIII  176 (460)
T ss_pred             cccccceEeeeeCCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-HcCC---CcEEE
Confidence               02478999999942           3344444445577999999999854 4566555555443 3453   37899


Q ss_pred             EEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          143 VFTGGNELEDNDETLEDYLGPECPKPLKEILQLC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       143 V~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      |+||+|+.+.  ..+++...     .++.++..+ ...+.+|..++..+    .++..|++.|.+.++.
T Consensus       177 vlNKiDlv~~--~~~~~~~~-----ei~~~l~~~~~~~~~iipVSA~~G----~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        177 LQNKIDLVKE--AQAQDQYE-----EIRNFVKGTIADNAPIIPISAQLK----YNIDVVLEYICTQIPI  234 (460)
T ss_pred             EEecccccCH--HHHHHHHH-----HHHHHHHhhccCCCeEEEeeCCCC----CCHHHHHHHHHhhCCC
Confidence            9999998754  33333222     233333321 12233444444333    7899999999876654

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.46  E-value=8.4e-14  Score=108.03  Aligned_cols=120  Identities=14%  Similarity=0.213  Sum_probs=67.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ...|+|+|++|+|||+|+..|.......+..+   .  ..... .+....+..+.+||+||...-+   ..+...+.   
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS---~--e~n~~~~~~~~~~~~~~lvD~PGH~rlr---~~~~~~~~---   71 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTS---M--ENNIAYNVNNSKGKKLRLVDIPGHPRLR---SKLLDELK---   71 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B------S--SEEEECCGSSTCGTCECEEEETT-HCCC---HHHHHHHH---
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeecc---c--cCCceEEeecCCCCEEEEEECCCcHHHH---HHHHHhhh---
Confidence            46899999999999999999987643222211   1  11111 1111245689999999976432   12222211   


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc----cccCeEEEEEeCCCCCCC
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK----KVFDYMIVVFTGGNELED  152 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~----~~~~~~ivV~nk~D~~~~  152 (259)
                        ....+.+||||+|+. .+...-.+..+.|..++-.    ....|++|+.||.|+...
T Consensus        72 --~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   72 --YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             --HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             --chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence              233468999999987 3333334555555554422    223499999999998864

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.43  E-value=9.6e-13  Score=97.34  Aligned_cols=161  Identities=16%  Similarity=0.169  Sum_probs=104.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC---CCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS---SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~---~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      -.++|+|+|..=+|||||+-..+....-....++   ...+++....    .....+.||||+|-           +.+.
T Consensus        12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~e----d~ra~L~IWDTAGQ-----------ErfH   76 (218)
T KOG0088|consen   12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVE----DCRADLHIWDTAGQ-----------ERFH   76 (218)
T ss_pred             eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccc----cceeeeeeeeccch-----------Hhhh
Confidence            3589999999999999999877755432222111   1122222221    12247899999993           2444


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      ..-..++++.+++|+|+|++++-+.+. +.|...|+.++|..+  -++||.||+|+-+...-+         ........
T Consensus        77 ALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEeeR~Vt---------~qeAe~YA  145 (218)
T KOG0088|consen   77 ALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEERQVT---------RQEAEAYA  145 (218)
T ss_pred             ccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHhhhhh---------HHHHHHHH
Confidence            444667889999999999997666554 678888999999876  889999999976541111         11233445


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +..+..++-  .++++.    .||.||++.+-....+
T Consensus       146 esvGA~y~e--TSAk~N----~Gi~elFe~Lt~~MiE  176 (218)
T KOG0088|consen  146 ESVGALYME--TSAKDN----VGISELFESLTAKMIE  176 (218)
T ss_pred             Hhhchhhee--cccccc----cCHHHHHHHHHHHHHH
Confidence            555555443  333332    7899999877655444

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=2.2e-12  Score=112.84  Aligned_cols=168  Identities=21%  Similarity=0.285  Sum_probs=119.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccccc-------------CCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK-------------AGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFD   81 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~   81 (259)
                      ++.+++.++.....|||||...|+....+...             ....|.|...+...+.+.++  .-+++|||||.-|
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            45689999999999999999998644321111             01237777777666654332  5799999999887


Q ss_pred             CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh
Q 024985           82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~  161 (259)
                      +..       ++.+.+..+    +++|+|+|+.++...++...+-...+ ++-    .+|.|+||+|+...+.+.++.  
T Consensus       138 Fs~-------EVsRslaac----~G~lLvVDA~qGvqAQT~anf~lAfe-~~L----~iIpVlNKIDlp~adpe~V~~--  199 (650)
T KOG0462|consen  138 FSG-------EVSRSLAAC----DGALLVVDASQGVQAQTVANFYLAFE-AGL----AIIPVLNKIDLPSADPERVEN--  199 (650)
T ss_pred             ccc-------eehehhhhc----CceEEEEEcCcCchHHHHHHHHHHHH-cCC----eEEEeeeccCCCCCCHHHHHH--
Confidence            654       555555555    99999999999999888665554433 232    889999999987654333332  


Q ss_pred             CCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCC
Q 024985          162 GPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQ  214 (259)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~  214 (259)
                            .+.+++..++..+...+++..      .++.++|+.|.+.++-..+.
T Consensus       200 ------q~~~lF~~~~~~~i~vSAK~G------~~v~~lL~AII~rVPpP~~~  240 (650)
T KOG0462|consen  200 ------QLFELFDIPPAEVIYVSAKTG------LNVEELLEAIIRRVPPPKGI  240 (650)
T ss_pred             ------HHHHHhcCCccceEEEEeccC------ccHHHHHHHHHhhCCCCCCC
Confidence                  456677777777666666543      67999999999998766544

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.40  E-value=1e-11  Score=92.39  Aligned_cols=164  Identities=13%  Similarity=0.073  Sum_probs=101.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ...+++++|.+-+|||+|+..++......-...+.++................+.+|||+|-           +.+.+..
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagq-----------erfrsit   75 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQ-----------ERFRSIT   75 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccch-----------HHHHHHH
Confidence            45789999999999999999999777532221122222211111111112237899999993           3566666


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      +.+++..-++++|+|.+++-+.+. ..|++...-..+.+...-+.+|.+|+|+.....-+         .+....+...|
T Consensus        76 ksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt---------~EEaEklAa~h  146 (213)
T KOG0091|consen   76 KSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVT---------AEEAEKLAASH  146 (213)
T ss_pred             HHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcccc---------HHHHHHHHHhc
Confidence            667777789999999997776665 34444444333423222456889999988541111         22455677777


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      +-.  ++..+++++    .+++|.+..+.+-
T Consensus       147 gM~--FVETSak~g----~NVeEAF~mlaqe  171 (213)
T KOG0091|consen  147 GMA--FVETSAKNG----CNVEEAFDMLAQE  171 (213)
T ss_pred             Cce--EEEecccCC----CcHHHHHHHHHHH
Confidence            754  445555444    5677777766553

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.39  E-value=8.1e-12  Score=111.12  Aligned_cols=119  Identities=16%  Similarity=0.211  Sum_probs=78.7

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCccc-----------------------------ccCCCCCcceeeEEEEEEee
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFK-----------------------------SKAGSSGVTKTCEMQRTMLK   66 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~-----------------------------~~~~~~~~T~~~~~~~~~~~   66 (259)
                      ..+..+|+++|..++|||||+-+|+-.....                             ......+.|.+.....+. .
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~-~   82 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE-T   82 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec-C
Confidence            4567899999999999999998876211000                             001123566666555554 4


Q ss_pred             CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CC------HhHHHHHHHHHHHhcccccCe
Q 024985           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-FS------EEGGAAIHSLESLFGKKVFDY  139 (259)
Q Consensus        67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~------~~~~~~l~~l~~~~~~~~~~~  139 (259)
                      ++..+.++||||..           .+...+......+|++|+|+|++.+ +.      .+..+.+..+.. +|.   .+
T Consensus        83 ~~~~i~liDtPGh~-----------df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi---~~  147 (447)
T PLN00043         83 TKYYCTVIDAPGHR-----------DFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGV---KQ  147 (447)
T ss_pred             CCEEEEEEECCCHH-----------HHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCC---Cc
Confidence            67799999999943           4444445556688999999999854 22      344444444333 443   26


Q ss_pred             EEEEEeCCCCC
Q 024985          140 MIVVFTGGNEL  150 (259)
Q Consensus       140 ~ivV~nk~D~~  150 (259)
                      ++|++||+|+.
T Consensus       148 iIV~vNKmD~~  158 (447)
T PLN00043        148 MICCCNKMDAT  158 (447)
T ss_pred             EEEEEEcccCC
Confidence            78899999976

>cd01900 YchF YchF subfamily

Probab=99.38  E-value=2.8e-12  Score=106.46  Aligned_cols=87  Identities=20%  Similarity=0.215  Sum_probs=62.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc----------------EEEEEeCCCCCCCCCC
Q 024985           22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ----------------VVNVIDTPGLFDSSAD   85 (259)
Q Consensus        22 I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~----------------~~~liDTPG~~~~~~~   85 (259)
                      |+++|.||||||||+|+|++...  .....+++|..+....+...+.+                .+.++||||+......
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~--~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCC--ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            57999999999999999999886  22334666766666554432221                4999999999976554


Q ss_pred             hHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985           86 SEFVSKEIVKCIGMAKDGIHAVLLVFSVR  114 (259)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (259)
                      ...+...+...+.    .+|++++|+|+.
T Consensus        79 ~~glg~~fL~~i~----~~D~li~VV~~f  103 (274)
T cd01900          79 GEGLGNKFLSHIR----EVDAIAHVVRCF  103 (274)
T ss_pred             hhHHHHHHHHHHH----hCCEEEEEEeCc
Confidence            5556666655544    559999999863

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=1.7e-11  Score=104.48  Aligned_cols=152  Identities=18%  Similarity=0.262  Sum_probs=99.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCC---------------------Cc--cc------ccCCCCCcceeeEEEEEEee
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGR---------------------RA--FK------SKAGSSGVTKTCEMQRTMLK   66 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~---------------------~~--~~------~~~~~~~~T~~~~~~~~~~~   66 (259)
                      .++..+++++|...+|||||+-.|+=.                     .-  |.      ......|.|.+.....++ .
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe-t   82 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE-T   82 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee-c
Confidence            456789999999999999999777511                     10  00      000122666666666555 4


Q ss_pred             CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHhHHHHHHHHHHHhcccccCe
Q 024985           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-------FSEEGGAAIHSLESLFGKKVFDY  139 (259)
Q Consensus        67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~  139 (259)
                      +...+.|+|+||..           .+..-+...+..+|+.+||+|+..+       ...++++-+- |...+|.   ..
T Consensus        83 ~k~~~tIiDaPGHr-----------dFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~-La~tlGi---~~  147 (428)
T COG5256          83 DKYNFTIIDAPGHR-----------DFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAF-LARTLGI---KQ  147 (428)
T ss_pred             CCceEEEeeCCchH-----------HHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHH-HHHhcCC---ce
Confidence            55689999999943           3344444456688999999999855       4445544443 4444663   58


Q ss_pred             EEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc---EEEEeCCCc
Q 024985          140 MIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR---RVLFDNKTK  188 (259)
Q Consensus       140 ~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~  188 (259)
                      +||++||+|..+.+.+.+++...     .+..+++.++..   +.++..++.
T Consensus       148 lIVavNKMD~v~wde~rf~ei~~-----~v~~l~k~~G~~~~~v~FIPiSg~  194 (428)
T COG5256         148 LIVAVNKMDLVSWDEERFEEIVS-----EVSKLLKMVGYNPKDVPFIPISGF  194 (428)
T ss_pred             EEEEEEcccccccCHHHHHHHHH-----HHHHHHHHcCCCccCCeEEecccc
Confidence            99999999999876566666544     455588888764   334444433

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=3.1e-11  Score=88.87  Aligned_cols=154  Identities=14%  Similarity=0.199  Sum_probs=92.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC-CCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG-SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~-~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      +.-.+++++|+.|+|||.|+..+..... ....+ +.+...-..+..+. .+...+.||||+|           .+.+.+
T Consensus         7 DyLfKfl~iG~aGtGKSCLLh~Fie~kf-kDdssHTiGveFgSrIinVG-gK~vKLQIWDTAG-----------QErFRS   73 (214)
T KOG0086|consen    7 DYLFKFLVIGSAGTGKSCLLHQFIENKF-KDDSSHTIGVEFGSRIVNVG-GKTVKLQIWDTAG-----------QERFRS   73 (214)
T ss_pred             hhhheeEEeccCCCChhHHHHHHHHhhh-cccccceeeeeecceeeeec-CcEEEEEEeeccc-----------HHHHHH
Confidence            3457899999999999999999886654 22211 22222222222111 1234789999999           346777


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ....+++++-+.++|+|++++-+... ..||.-.+-+-...+  -++++.||.|+-+..            .....+-.+
T Consensus        74 VtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nI--vviL~GnKkDL~~~R------------~VtflEAs~  139 (214)
T KOG0086|consen   74 VTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNI--VVILCGNKKDLDPER------------EVTFLEASR  139 (214)
T ss_pred             HHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcE--EEEEeCChhhcChhh------------hhhHHHHHh
Confidence            77788999999999999996655443 233333333322212  456678999976541            112333344


Q ss_pred             HcCC-cEEEEeCCCcccccchhHHHHHH
Q 024985          175 LCEN-RRVLFDNKTKDAATRTEQVGKLI  201 (259)
Q Consensus       175 ~~~~-~~~~~~~~~~~~~~~~~~i~eLl  201 (259)
                      .|.. ...+...++.++    ++++|.+
T Consensus       140 FaqEnel~flETSa~TG----eNVEEaF  163 (214)
T KOG0086|consen  140 FAQENELMFLETSALTG----ENVEEAF  163 (214)
T ss_pred             hhcccceeeeeeccccc----ccHHHHH
Confidence            4443 344555666555    5666643

>PTZ00258 GTP-binding protein; Provisional

Probab=99.37  E-value=5.3e-12  Score=109.36  Aligned_cols=92  Identities=17%  Similarity=0.221  Sum_probs=65.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC----------------CcEEEEEeCCCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD----------------GQVVNVIDTPGLF   80 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~----------------~~~~~liDTPG~~   80 (259)
                      ....+|+++|.||||||||+|+|++...  .....+++|..+....+.+.+                ...+.++||||+.
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~--~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQV--PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcc--cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            3456899999999999999999998875  223346677676666554322                1258999999998


Q ss_pred             CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985           81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR  114 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (259)
                      ........+...+...+.    .+|++++|+|+.
T Consensus        97 ~ga~~g~gLg~~fL~~Ir----~aD~il~VVd~f  126 (390)
T PTZ00258         97 KGASEGEGLGNAFLSHIR----AVDGIYHVVRAF  126 (390)
T ss_pred             cCCcchhHHHHHHHHHHH----HCCEEEEEEeCC
Confidence            655444455555555544    459999999973

>PTZ00416 elongation factor 2; Provisional

Probab=99.36  E-value=3.6e-12  Score=121.35  Aligned_cols=119  Identities=14%  Similarity=0.190  Sum_probs=80.8

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC--------------CCCcceeeEEEEEEee---------CCcEEE
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG--------------SSGVTKTCEMQRTMLK---------DGQVVN   72 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~--------------~~~~T~~~~~~~~~~~---------~~~~~~   72 (259)
                      ....++|+++|..++|||||+++|+..........              ..+.|.........+.         .+..++
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            45567999999999999999999986432111100              0122222211112221         145799


Q ss_pred             EEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985           73 VIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL  150 (259)
Q Consensus        73 liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~  150 (259)
                      ++||||+.+           +...+..+...+|++|+|+|+..++..++..+++.+.+. +    .|+++++||+|+.
T Consensus        96 liDtPG~~~-----------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-~----~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVD-----------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-R----IRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHh-----------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-C----CCEEEEEEChhhh
Confidence            999999753           223334455677999999999988998888888877653 3    3999999999987

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.35  E-value=7.5e-12  Score=107.24  Aligned_cols=89  Identities=19%  Similarity=0.188  Sum_probs=63.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC----------------cEEEEEeCCCCCCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG----------------QVVNVIDTPGLFDSS   83 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~----------------~~~~liDTPG~~~~~   83 (259)
                      .+|+++|.||||||||+|+|++...  .....+++|..+....+...+.                ..+.++||||+....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~--~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC--eecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            5899999999999999999999884  2223456666666544442221                258999999998765


Q ss_pred             CChHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985           84 ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR  114 (259)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (259)
                      .....+...+...+.    .+|++++|+|+.
T Consensus        81 ~~g~glg~~fL~~i~----~aD~li~VVd~f  107 (364)
T PRK09601         81 SKGEGLGNQFLANIR----EVDAIVHVVRCF  107 (364)
T ss_pred             ChHHHHHHHHHHHHH----hCCEEEEEEeCC
Confidence            444455555655544    559999999974

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=3.8e-12  Score=106.59  Aligned_cols=131  Identities=18%  Similarity=0.283  Sum_probs=91.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe----eCC------------------------
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML----KDG------------------------   68 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~----~~~------------------------   68 (259)
                      ..++-|+++|+.+.||||+||.|+..+.+.....+.++|..........    ..|                        
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            3578999999999999999999999997655555555554433332100    000                        


Q ss_pred             -----------cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccc
Q 024985           69 -----------QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKV  136 (259)
Q Consensus        69 -----------~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~  136 (259)
                                 ..+.||||||+.+...+..+-.-.+...+...+..+|.|++++|+. -.++++-.+++..|+.   .+ 
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG---~E-  211 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG---HE-  211 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC---Cc-
Confidence                       1399999999987654433333345555555667889999999987 4566666777777653   32 


Q ss_pred             cCeEEEEEeCCCCCCC
Q 024985          137 FDYMIVVFTGGNELED  152 (259)
Q Consensus       137 ~~~~ivV~nk~D~~~~  152 (259)
                       ..+-||+||.|.++.
T Consensus       212 -dkiRVVLNKADqVdt  226 (532)
T KOG1954|consen  212 -DKIRVVLNKADQVDT  226 (532)
T ss_pred             -ceeEEEeccccccCH
Confidence             378899999999976

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.34  E-value=4.3e-11  Score=94.99  Aligned_cols=163  Identities=17%  Similarity=0.095  Sum_probs=96.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ..+|+++|.+|+|||+|...+++...... ..+...+.......+. .....+.|+||+|....           ..+..
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~-y~ptied~y~k~~~v~-~~~~~l~ilDt~g~~~~-----------~~~~~   69 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVED-YDPTIEDSYRKELTVD-GEVCMLEILDTAGQEEF-----------SAMRD   69 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccc-cCCCccccceEEEEEC-CEEEEEEEEcCCCcccC-----------hHHHH
Confidence            47899999999999999999887775222 2222112222222222 22237889999994322           22222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      .+....|++++|++++++-+.++ ..+.+.|.+..+. ..-|+++|.||+|+.....-.         .+.-+.+....+
T Consensus        70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~~R~V~---------~eeg~~la~~~~  139 (196)
T KOG0395|consen   70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLERERQVS---------EEEGKALARSWG  139 (196)
T ss_pred             HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchhccccC---------HHHHHHHHHhcC
Confidence            34456699999999997776665 3444555343332 224999999999987531111         112334444444


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..  ++..+++..    .++.+++..+...+..
T Consensus       140 ~~--f~E~Sak~~----~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  140 CA--FIETSAKLN----YNVDEVFYELVREIRL  166 (196)
T ss_pred             Cc--EEEeeccCC----cCHHHHHHHHHHHHHh
Confidence            43  445554432    5777877776665544

>PRK13768 GTPase; Provisional

Probab=99.33  E-value=1.3e-11  Score=101.98  Aligned_cols=131  Identities=18%  Similarity=0.135  Sum_probs=73.4

Q ss_pred             EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 024985           70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNE  149 (259)
Q Consensus        70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~  149 (259)
                      .+.+|||||..+.... ......+.+.+....  ++++++|+|+....+..+.....++....-.....|+++|+||+|.
T Consensus        98 ~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~  174 (253)
T PRK13768         98 DYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL  174 (253)
T ss_pred             CEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence            6999999997543211 223334444443322  7899999999755666665444443311111123599999999999


Q ss_pred             CCCCcccHHh---hhCC----------------CCCchHHHHHHHcCC--cEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          150 LEDNDETLED---YLGP----------------ECPKPLKEILQLCEN--RRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       150 ~~~~~~~~~~---~~~~----------------~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ...  .+.+.   ++..                ..+..+-+.++..+.  .++.++...      ..++.+|++.|.+.+
T Consensus       175 ~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~------~~gl~~L~~~I~~~l  246 (253)
T PRK13768        175 LSE--EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKT------GEGFDELYAAIQEVF  246 (253)
T ss_pred             cCc--hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCC------CcCHHHHHHHHHHHc
Confidence            866  33322   2220                000111122334442  344444432      278999999998887


Q ss_pred             HHh
Q 024985          209 LEN  211 (259)
Q Consensus       209 ~~~  211 (259)
                      ...
T Consensus       247 ~~~  249 (253)
T PRK13768        247 CGG  249 (253)
T ss_pred             CCC
Confidence            543

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.33  E-value=5.6e-12  Score=118.53  Aligned_cols=118  Identities=14%  Similarity=0.222  Sum_probs=76.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcc--------------cccCCCCCcceeeEEEE----EEeeCCcEEEEEeCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAF--------------KSKAGSSGVTKTCEMQR----TMLKDGQVVNVIDTPG   78 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~--------------~~~~~~~~~T~~~~~~~----~~~~~~~~~~liDTPG   78 (259)
                      ...++|+++|+.++|||||+++|+.....              .......+.|.......    .. ..+..+++|||||
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~-~~~~~i~liDTPG   95 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYE-GNEYLINLIDTPG   95 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeec-CCceEEEEEeCCC
Confidence            35689999999999999999998742110              00000122333222111    22 3456899999999


Q ss_pred             CCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985           79 LFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE  151 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~  151 (259)
                      +.+..       ..+.    .+...+|++|+|+|+..+....+..++..+.+ .+    .|.++|+||+|...
T Consensus        96 ~~~f~-------~~~~----~al~~aD~~llVvda~~g~~~~t~~~~~~~~~-~~----~p~ivviNKiD~~~  152 (720)
T TIGR00490        96 HVDFG-------GDVT----RAMRAVDGAIVVVCAVEGVMPQTETVLRQALK-EN----VKPVLFINKVDRLI  152 (720)
T ss_pred             ccccH-------HHHH----HHHHhcCEEEEEEecCCCCCccHHHHHHHHHH-cC----CCEEEEEEChhccc
Confidence            87531       1222    23456699999999987777777777666544 22    27789999999874

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.33  E-value=5.1e-12  Score=111.35  Aligned_cols=211  Identities=17%  Similarity=0.196  Sum_probs=118.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC-CCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS-SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      .....+|+|+|..|+||||||-+|+..+....-... +..+..   ..+ .....+..++||+.-.+   +...+.++  
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---adv-tPe~vpt~ivD~ss~~~---~~~~l~~E--   76 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADV-TPENVPTSIVDTSSDSD---DRLCLRKE--   76 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---Ccc-CcCcCceEEEecccccc---hhHHHHHH--
Confidence            345689999999999999999999988753322111 111111   111 24556789999985221   11222333  


Q ss_pred             HHHhhcCCCccEEEEEEeCCCC--CCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNR--FSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI  172 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (259)
                            .+.+|++++|...++.  +......||-.+++.+|.....|+|+|.||+|.......+.+.        .+-.+
T Consensus        77 ------irkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~--------~~~pi  142 (625)
T KOG1707|consen   77 ------IRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEV--------NTLPI  142 (625)
T ss_pred             ------HhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhH--------HHHHH
Confidence                  3455999999987732  3334467888899988888888999999999988652221222        11222


Q ss_pred             HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh--HHHHHHHHHHHHhhhh-ccHHHH
Q 024985          173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKG--ATKLCDQQVEVDSLKG-YSKREI  249 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~  249 (259)
                      +.....    ++.+...++....++.|++....+.+...-+..|..+- ++.+..  ..-.|-+.-++..++. ..+.|+
T Consensus       143 m~~f~E----iEtciecSA~~~~n~~e~fYyaqKaVihPt~PLyda~~-qelkp~~v~al~RIFki~D~d~D~~Lsd~El  217 (625)
T KOG1707|consen  143 MIAFAE----IETCIECSALTLANVSELFYYAQKAVIHPTSPLYDAEE-QELKPRCVKALKRIFKISDSDNDGALSDAEL  217 (625)
T ss_pred             HHHhHH----HHHHHhhhhhhhhhhHhhhhhhhheeeccCcccccccc-ccccHHHHHHHHHHHhhhccccccccchhhh
Confidence            222111    11111111233367778887777766655555553211 011100  1122334445555555 666666


Q ss_pred             HHHHH
Q 024985          250 SELKE  254 (259)
Q Consensus       250 ~~~~~  254 (259)
                      .++++
T Consensus       218 n~fQ~  222 (625)
T KOG1707|consen  218 NDFQK  222 (625)
T ss_pred             hHHHH
Confidence            66654

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.30  E-value=1.8e-11  Score=116.85  Aligned_cols=119  Identities=13%  Similarity=0.173  Sum_probs=80.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC--------------CCCcceeeEEEEEEee---------------
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG--------------SSGVTKTCEMQRTMLK---------------   66 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~--------------~~~~T~~~~~~~~~~~---------------   66 (259)
                      ....++|+++|+.++|||||+++|+..........              ..+.|.........+.               
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            44678999999999999999999975442111100              0122222222222221               


Q ss_pred             CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeC
Q 024985           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTG  146 (259)
Q Consensus        67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk  146 (259)
                      .+..+++|||||..+           +...+..+...+|+.|+|+|+..++...+..+++.+.. .+    .|+++++||
T Consensus        96 ~~~~inliDtPGh~d-----------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~-~~----~p~i~~iNK  159 (843)
T PLN00116         96 NEYLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-ER----IRPVLTVNK  159 (843)
T ss_pred             CceEEEEECCCCHHH-----------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH-CC----CCEEEEEEC
Confidence            245789999999643           22223334456699999999998998888888887655 23    399999999


Q ss_pred             CCCC
Q 024985          147 GNEL  150 (259)
Q Consensus       147 ~D~~  150 (259)
                      +|..
T Consensus       160 ~D~~  163 (843)
T PLN00116        160 MDRC  163 (843)
T ss_pred             Cccc
Confidence            9987

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=2.3e-11  Score=92.74  Aligned_cols=163  Identities=10%  Similarity=0.018  Sum_probs=101.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+.+|+++|--||||||+++.|--.+...+     .+|.......+. +.+..+.+||.-|-..           +...
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~-ykn~~f~vWDvGGq~k-----------~R~l   77 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVE-YKNISFTVWDVGGQEK-----------LRPL   77 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEE-EcceEEEEEecCCCcc-----------cccc
Confidence            4568999999999999999999876665332     234444444444 5688999999999542           2233


Q ss_pred             HhhcCCCccEEEEEEeCCCC--CCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNR--FSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ...++...+++|||+|.+++  +...-.++...+...-  -...|+++..||.|....  .+..++-.      .-.+-+
T Consensus        78 W~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~--l~~~~llv~aNKqD~~~a--ls~~ei~~------~L~l~~  147 (181)
T KOG0070|consen   78 WKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE--LRNAPLLVFANKQDLPGA--LSAAEITN------KLGLHS  147 (181)
T ss_pred             hhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc--cCCceEEEEechhhcccc--CCHHHHHh------Hhhhhc
Confidence            34456677999999999843  3332223333332211  124599999999998755  33332221      111122


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      -++...++..+++..+    .|+.|-++.+.+.+..
T Consensus       148 l~~~~w~iq~~~a~~G----~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  148 LRSRNWHIQSTCAISG----EGLYEGLDWLSNNLKK  179 (181)
T ss_pred             cCCCCcEEeecccccc----ccHHHHHHHHHHHHhc
Confidence            2233444555555555    7899988888877653

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.28  E-value=1.5e-10  Score=93.64  Aligned_cols=25  Identities=20%  Similarity=0.357  Sum_probs=21.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..+..|+++|-.|+|||||+..|..
T Consensus        17 ~~p~~ilVvGMAGSGKTTF~QrL~~   41 (366)
T KOG1532|consen   17 QRPVIILVVGMAGSGKTTFMQRLNS   41 (366)
T ss_pred             cCCcEEEEEecCCCCchhHHHHHHH
Confidence            4567899999999999999988853

>PRK12740 elongation factor G; Reviewed

Probab=99.27  E-value=5.6e-11  Score=111.44  Aligned_cols=111  Identities=21%  Similarity=0.300  Sum_probs=73.5

Q ss_pred             EcCCCCcHHHHHHHHhCCCccccc---C-------------CCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHH
Q 024985           25 VGRTGNGKSATGNSILGRRAFKSK---A-------------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEF   88 (259)
Q Consensus        25 ~G~~g~GKSslin~l~~~~~~~~~---~-------------~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~   88 (259)
                      +|++|+|||||+++|+........   .             ...+.|.......+. ..+..+.+|||||..+       
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~-~~~~~i~liDtPG~~~-------   72 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCE-WKGHKINLIDTPGHVD-------   72 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEE-ECCEEEEEEECCCcHH-------
Confidence            599999999999999544321110   0             012344444444444 4678999999999643       


Q ss_pred             HHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           89 VSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      +......    +...+|++++|+|++.+....+..++..+.. .+    .|+++|+||+|....
T Consensus        73 ~~~~~~~----~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~-~~----~p~iiv~NK~D~~~~  127 (668)
T PRK12740         73 FTGEVER----ALRVLDGAVVVVCAVGGVEPQTETVWRQAEK-YG----VPRIIFVNKMDRAGA  127 (668)
T ss_pred             HHHHHHH----HHHHhCeEEEEEeCCCCcCHHHHHHHHHHHH-cC----CCEEEEEECCCCCCC
Confidence            1122222    2345699999999987777777666666554 23    399999999998754

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=1.7e-10  Score=103.55  Aligned_cols=118  Identities=21%  Similarity=0.310  Sum_probs=81.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceee----------------------------------------
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTC----------------------------------------   58 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~----------------------------------------   58 (259)
                      .-+|+++|++++||||++|+++...+.+.+..+.   +.|                                        
T Consensus       109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~---TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~  185 (749)
T KOG0448|consen  109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHT---TNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD  185 (749)
T ss_pred             ccEEEEeCCCCCcHHHHHHHHHHHhhCccccccc---ceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence            3589999999999999999999887766553221   111                                        


Q ss_pred             ----EEEEEEeeCC------cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHH
Q 024985           59 ----EMQRTMLKDG------QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSL  128 (259)
Q Consensus        59 ----~~~~~~~~~~------~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l  128 (259)
                          ....+.+.++      ..++++|.||+.-+.        +...++-.....+|++|||+.+.+.++..++.++...
T Consensus       186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s--------e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~v  257 (749)
T KOG0448|consen  186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS--------ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKV  257 (749)
T ss_pred             cCcceEEEEEecCccchhhhccceeccCCCCCCch--------hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHh
Confidence                1111222333      259999999988542        2233333334577999999999988888888888776


Q ss_pred             HHHhcccccCeEEEEEeCCCCCCC
Q 024985          129 ESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       129 ~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      .+.     ..+++|+.||||...+
T Consensus       258 s~~-----KpniFIlnnkwDasas  276 (749)
T KOG0448|consen  258 SEE-----KPNIFILNNKWDASAS  276 (749)
T ss_pred             hcc-----CCcEEEEechhhhhcc
Confidence            653     2388899999998755

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=9.8e-11  Score=100.58  Aligned_cols=158  Identities=18%  Similarity=0.282  Sum_probs=114.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCc-ccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRA-FKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      .|+.+|....|||||+.+++|... ........+.|.+..++... ..+..+.|||+||+.           .+.+.+..
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~-~~d~~~~fIDvpgh~-----------~~i~~mia   69 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRK-LEDGVMGFIDVPGHP-----------DFISNLLA   69 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEecc-CCCCceEEeeCCCcH-----------HHHHHHHh
Confidence            478899999999999999998763 11223456889999888776 455589999999964           44444555


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN-  178 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  178 (259)
                      ....+|..++|+++++++..++.+.+..|.- +|.   ++.+||+||+|..++  ..+++.        +++++..... 
T Consensus        70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdl-lgi---~~giivltk~D~~d~--~r~e~~--------i~~Il~~l~l~  135 (447)
T COG3276          70 GLGGIDYALLVVAADEGLMAQTGEHLLILDL-LGI---KNGIIVLTKADRVDE--ARIEQK--------IKQILADLSLA  135 (447)
T ss_pred             hhcCCceEEEEEeCccCcchhhHHHHHHHHh-cCC---CceEEEEeccccccH--HHHHHH--------HHHHHhhcccc
Confidence            6668899999999988999998888877665 664   477999999999876  434433        3344443331 


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ...+|..++..+    +||++|...|.++.
T Consensus       136 ~~~i~~~s~~~g----~GI~~Lk~~l~~L~  161 (447)
T COG3276         136 NAKIFKTSAKTG----RGIEELKNELIDLL  161 (447)
T ss_pred             cccccccccccC----CCHHHHHHHHHHhh
Confidence            111344444433    89999999999888

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=1.2e-10  Score=107.64  Aligned_cols=121  Identities=20%  Similarity=0.266  Sum_probs=87.7

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCccccc---CC-------------CCCcceeeEEEEEEeeCCcEEEEEeCCCC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSK---AG-------------SSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~---~~-------------~~~~T~~~~~~~~~~~~~~~~~liDTPG~   79 (259)
                      ....++|.++|+..+|||||.-+|+-.....+.   +.             ..+.|.........|..+..+++|||||.
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            346689999999999999999888633221111   00             12555555555555322489999999998


Q ss_pred             CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      -|+.       .++.+.+..+    |+.++|+|+..+...+...+++...+ .+.    |.++++||+|.+..
T Consensus        87 VDFt-------~EV~rslrvl----DgavvVvdaveGV~~QTEtv~rqa~~-~~v----p~i~fiNKmDR~~a  143 (697)
T COG0480          87 VDFT-------IEVERSLRVL----DGAVVVVDAVEGVEPQTETVWRQADK-YGV----PRILFVNKMDRLGA  143 (697)
T ss_pred             cccH-------HHHHHHHHhh----cceEEEEECCCCeeecHHHHHHHHhh-cCC----CeEEEEECcccccc
Confidence            8753       3555555444    99999999998999998888888876 343    99999999999865

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.26  E-value=4.2e-11  Score=87.64  Aligned_cols=152  Identities=15%  Similarity=0.112  Sum_probs=95.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ...+.++|--++|||||.|.+......    .....|.....+.+. ..+..+.+||.||-.           .+..+..
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~----edmiptvGfnmrk~t-kgnvtiklwD~gGq~-----------rfrsmWe   83 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYL----EDMIPTVGFNMRKVT-KGNVTIKLWDLGGQP-----------RFRSMWE   83 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccch----hhhcccccceeEEec-cCceEEEEEecCCCc-----------cHHHHHH
Confidence            457899999999999999999764431    123345555555544 456789999999954           3444555


Q ss_pred             hcCCCccEEEEEEeCCCC--CCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           99 MAKDGIHAVLLVFSVRNR--FSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~--~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .+.+++++++||+|+.++  ++..-.+    |..++.++  ...|++|+.||.|..+.  -.-.            ++++
T Consensus        84 rycR~v~aivY~VDaad~~k~~~sr~E----L~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~------------~li~  145 (186)
T KOG0075|consen   84 RYCRGVSAIVYVVDAADPDKLEASRSE----LHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKI------------ALIE  145 (186)
T ss_pred             HHhhcCcEEEEEeecCCcccchhhHHH----HHHHhcchhhcCCcEEEecccccCccc--ccHH------------HHHH
Confidence            667889999999998732  3322222    33333333  22499999999997754  2222            2233


Q ss_pred             HcC------CcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          175 LCE------NRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       175 ~~~------~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ..+      ..++-|+.+.+..    .+++-+++++.+.-
T Consensus       146 rmgL~sitdREvcC~siScke~----~Nid~~~~Wli~hs  181 (186)
T KOG0075|consen  146 RMGLSSITDREVCCFSISCKEK----VNIDITLDWLIEHS  181 (186)
T ss_pred             HhCccccccceEEEEEEEEcCC----ccHHHHHHHHHHHh
Confidence            222      2355555554433    67888888776543

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.25  E-value=5.3e-11  Score=96.40  Aligned_cols=126  Identities=17%  Similarity=0.208  Sum_probs=85.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC-CCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCC---hHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG-SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD---SEFVSKE   92 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~-~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~---~~~~~~~   92 (259)
                      ...+.+++.|.+|+|||||+|.++.......... .++.|+....+.    -+..++++|.||++.+...   .+.+..-
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH----VGKSWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee----ccceEEEEecCCcccccCCccCcchHhHh
Confidence            3458999999999999999999987764333333 556666666553    3578999999996533221   1222222


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ...++ ......-.+++++|++.++.+-|...+.++.+ .+.    |+.+|+||||....
T Consensus       210 t~~Y~-leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge-~~V----P~t~vfTK~DK~k~  263 (320)
T KOG2486|consen  210 TKSYL-LERENLVRVFLLVDASVPIQPTDNPEIAWLGE-NNV----PMTSVFTKCDKQKK  263 (320)
T ss_pred             HHHHH-HhhhhhheeeeeeeccCCCCCCChHHHHHHhh-cCC----CeEEeeehhhhhhh
Confidence            22222 22223345677788887888888888888877 343    99999999998743

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=99.21  E-value=7.8e-10  Score=89.82  Aligned_cols=96  Identities=17%  Similarity=0.088  Sum_probs=63.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCC-CcccccCCCCCcceeeEEEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGR-RAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKE   92 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~-~~~~~~~~~~~~T~~~~~~~~~~~--~~~~~~liDTPG~~~~~~~~~~~~~~   92 (259)
                      ..+...|+++|++++|||+|+|.|+|. ..+.......++|+.+-.......  .+..+.++||||+.+...........
T Consensus         4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence            345678999999999999999999998 356655555667776555543322  35789999999998765533011111


Q ss_pred             HHHHHhhcCCCccEEEEEEeCC
Q 024985           93 IVKCIGMAKDGIHAVLLVFSVR  114 (259)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~  114 (259)
                      +.. +..  .-++++||.++.+
T Consensus        84 ~~~-l~~--llss~~i~n~~~~  102 (224)
T cd01851          84 LFA-LAT--LLSSVLIYNSWET  102 (224)
T ss_pred             HHH-HHH--HHhCEEEEeccCc
Confidence            111 111  1237888888875

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.21  E-value=8.8e-11  Score=110.77  Aligned_cols=119  Identities=14%  Similarity=0.230  Sum_probs=77.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC--------------CCCcceeeEEEEEEe---eCCcEEEEEeCCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG--------------SSGVTKTCEMQRTML---KDGQVVNVIDTPGL   79 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~--------------~~~~T~~~~~~~~~~---~~~~~~~liDTPG~   79 (259)
                      ...++|+++|+.++|||||+.+|+..........              ..+.|.........+   ..+..++||||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            4567999999999999999999974332111000              012222222222221   13567999999998


Q ss_pred             CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985           80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE  151 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~  151 (259)
                      .+.       ...+..    +...+|++|+|+|+..+....+..++..... .+.    |.++++||+|...
T Consensus        98 ~df-------~~~~~~----~l~~~D~avlVvda~~g~~~~t~~~~~~~~~-~~~----~~iv~iNK~D~~~  153 (731)
T PRK07560         98 VDF-------GGDVTR----AMRAVDGAIVVVDAVEGVMPQTETVLRQALR-ERV----KPVLFINKVDRLI  153 (731)
T ss_pred             cCh-------HHHHHH----HHHhcCEEEEEEECCCCCCccHHHHHHHHHH-cCC----CeEEEEECchhhc
Confidence            753       223333    3345699999999987888888888876544 332    7799999999763

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.20  E-value=2.7e-09  Score=90.99  Aligned_cols=106  Identities=12%  Similarity=0.121  Sum_probs=59.7

Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHH-HHHHhcccccCeEEEEEeC
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHS-LESLFGKKVFDYMIVVFTG  146 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~-l~~~~~~~~~~~~ivV~nk  146 (259)
                      +..++||||+|...+..       .+       ...+|.+++|++..   +..+...++. +.+.       .-++|+||
T Consensus       148 g~d~viieT~Gv~qs~~-------~i-------~~~aD~vlvv~~p~---~gd~iq~~k~gi~E~-------aDIiVVNK  203 (332)
T PRK09435        148 GYDVILVETVGVGQSET-------AV-------AGMVDFFLLLQLPG---AGDELQGIKKGIMEL-------ADLIVINK  203 (332)
T ss_pred             CCCEEEEECCCCccchh-------HH-------HHhCCEEEEEecCC---chHHHHHHHhhhhhh-------hheEEeeh
Confidence            45799999999884321       11       12359999997633   2223222221 2221       34799999


Q ss_pred             CCCCCCCcccHHhhhCCCCCchHHHHHHHcC-------CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          147 GNELEDNDETLEDYLGPECPKPLKEILQLCE-------NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +|+...  ........     .++..+....       .+++.+++..      ..|+.+|++.|.++++.
T Consensus       204 aDl~~~--~~a~~~~~-----el~~~L~l~~~~~~~w~~pVi~vSA~~------g~GIdeL~~~I~~~~~~  261 (332)
T PRK09435        204 ADGDNK--TAARRAAA-----EYRSALRLLRPKDPGWQPPVLTCSALE------GEGIDEIWQAIEDHRAA  261 (332)
T ss_pred             hcccch--hHHHHHHH-----HHHHHHhcccccccCCCCCEEEEECCC------CCCHHHHHHHHHHHHHH
Confidence            998865  22221111     2233333211       2344455443      27999999999998874

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.20  E-value=2.1e-10  Score=98.93  Aligned_cols=178  Identities=16%  Similarity=0.232  Sum_probs=110.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc-ccccC-------------CCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA-FKSKA-------------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~-~~~~~-------------~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~   83 (259)
                      +-++|+++.....|||||+..|+.+.. |....             ...|.|.-.+-..+. +++..++|+||||.-|+.
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~-~~~~~INIvDTPGHADFG   82 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVN-YNGTRINIVDTPGHADFG   82 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceee-cCCeEEEEecCCCcCCcc
Confidence            457999999999999999999986542 11110             012455444444444 578899999999988765


Q ss_pred             CChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC
Q 024985           84 ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP  163 (259)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~  163 (259)
                      .       ++.+.++    -+|.+++++|+..+.-++.+-.++...+ .|-    +.|||+||+|.....++.+-+-.-.
T Consensus        83 G-------EVERvl~----MVDgvlLlVDA~EGpMPQTrFVlkKAl~-~gL----~PIVVvNKiDrp~Arp~~Vvd~vfD  146 (603)
T COG1217          83 G-------EVERVLS----MVDGVLLLVDASEGPMPQTRFVLKKALA-LGL----KPIVVINKIDRPDARPDEVVDEVFD  146 (603)
T ss_pred             c-------hhhhhhh----hcceEEEEEEcccCCCCchhhhHHHHHH-cCC----CcEEEEeCCCCCCCCHHHHHHHHHH
Confidence            4       3333333    3499999999998888888877775544 232    6678999999876533222111000


Q ss_pred             CCCchHHHHHHHcCCcEEEEeCCCc----ccccchhHHHHHHHHHHHHHHHhCC
Q 024985          164 ECPKPLKEILQLCENRRVLFDNKTK----DAATRTEQVGKLISLVNSVILENGG  213 (259)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~eLl~~i~~~~~~~~~  213 (259)
                       .-..+..--+++..++.+-+....    +.......+.-|++.|.+.++...+
T Consensus       147 -Lf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~  199 (603)
T COG1217         147 -LFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG  199 (603)
T ss_pred             -HHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence             000011112344555555443321    2223446788999999999887654

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.19  E-value=6.4e-10  Score=106.74  Aligned_cols=103  Identities=17%  Similarity=0.142  Sum_probs=76.0

Q ss_pred             cHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc-----------------EEEEEeCCCCCCCCCChHHHHHHH
Q 024985           31 GKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ-----------------VVNVIDTPGLFDSSADSEFVSKEI   93 (259)
Q Consensus        31 GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~-----------------~~~liDTPG~~~~~~~~~~~~~~~   93 (259)
                      +||||+.+|.+..+..  ....+.|+....+.+......                 .+.||||||..           .+
T Consensus       473 ~KTtLLD~iR~t~v~~--~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe-----------~F  539 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAK--KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE-----------AF  539 (1049)
T ss_pred             ccccHHHHHhCCCccc--ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH-----------HH
Confidence            3999999999999833  345788888887766532111                 38999999943           22


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE  151 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~  151 (259)
                      ..........+|++++|+|+++++...+...+..+.. .+    .|+++|+||+|+..
T Consensus       540 ~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~-~~----iPiIVViNKiDL~~  592 (1049)
T PRK14845        540 TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQ-YK----TPFVVAANKIDLIP  592 (1049)
T ss_pred             HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHH-cC----CCEEEEEECCCCcc
Confidence            2223334567899999999998888888888887765 33    39999999999864

>cd01858 NGP_1 NGP-1

Probab=99.19  E-value=5.5e-11  Score=91.34  Aligned_cols=57  Identities=23%  Similarity=0.325  Sum_probs=42.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~   79 (259)
                      ...+|+++|.||+|||||+|+|.+......+. .+++|+......    .+..+.++||||+
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYIT----LMKRIYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEE----cCCCEEEEECcCC
Confidence            35689999999999999999999987644433 345565544332    2345899999995

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.18  E-value=1.5e-10  Score=95.56  Aligned_cols=129  Identities=19%  Similarity=0.189  Sum_probs=86.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      .+.+.|++||.+|+||||||++|++...++..  .-..|-++.......+.|..+.+.||-||...-  +..+...|...
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~d--rLFATLDpT~h~a~Lpsg~~vlltDTvGFisdL--P~~LvaAF~AT  251 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPND--RLFATLDPTLHSAHLPSGNFVLLTDTVGFISDL--PIQLVAAFQAT  251 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccc--hhheeccchhhhccCCCCcEEEEeechhhhhhC--cHHHHHHHHHH
Confidence            34589999999999999999999977765443  234455555555555788899999999987532  23334444444


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhccc---ccCeEEEEEeCCCCCC
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKK---VFDYMIVVFTGGNELE  151 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~---~~~~~ivV~nk~D~~~  151 (259)
                      +.. ...+|++|.|+|++++.-+.. ...+..+.. +|.+   ....++=|=||+|..+
T Consensus       252 Lee-VaeadlllHvvDiShP~ae~q~e~Vl~vL~~-igv~~~pkl~~mieVdnkiD~e~  308 (410)
T KOG0410|consen  252 LEE-VAEADLLLHVVDISHPNAEEQRETVLHVLNQ-IGVPSEPKLQNMIEVDNKIDYEE  308 (410)
T ss_pred             HHH-HhhcceEEEEeecCCccHHHHHHHHHHHHHh-cCCCcHHHHhHHHhhcccccccc
Confidence            332 235699999999996655443 556666666 4542   1224666778888554

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=8.2e-11  Score=87.25  Aligned_cols=166  Identities=12%  Similarity=0.071  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEE--EEEEee--CC----cEEEEEeCCCCCCCCCChHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM--QRTMLK--DG----QVVNVIDTPGLFDSSADSEFVSK   91 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~--~~~~~~--~~----~~~~liDTPG~~~~~~~~~~~~~   91 (259)
                      .+.+.+|.+|+||||++-..+....-..-.++.+.......  +...-.  .|    ..+.+|||+|-           +
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQ-----------E   78 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQ-----------E   78 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccH-----------H
Confidence            45677899999999999887765531111111111111111  111000  11    26889999993           3


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHH
Q 024985           92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLK  170 (259)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~  170 (259)
                      .+.+.....++.+-++|+++|+++.-+... ..|+..|+-.-- ....-+++..||+|+...  ..+       ......
T Consensus        79 RFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAY-cE~PDivlcGNK~DL~~~--R~V-------s~~qa~  148 (219)
T KOG0081|consen   79 RFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAY-CENPDIVLCGNKADLEDQ--RVV-------SEDQAA  148 (219)
T ss_pred             HHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhc-cCCCCEEEEcCccchhhh--hhh-------hHHHHH
Confidence            455554555667788999999985444332 445555543211 112358889999997754  111       133566


Q ss_pred             HHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          171 EILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ++..+.+.++  |..++..+.+..+.++-|++.+-+-+
T Consensus       149 ~La~kyglPY--fETSA~tg~Nv~kave~LldlvM~Ri  184 (219)
T KOG0081|consen  149 ALADKYGLPY--FETSACTGTNVEKAVELLLDLVMKRI  184 (219)
T ss_pred             HHHHHhCCCe--eeeccccCcCHHHHHHHHHHHHHHHH
Confidence            7788877665  45555455445555666655554443

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=99.15  E-value=1.7e-08  Score=88.62  Aligned_cols=123  Identities=15%  Similarity=0.178  Sum_probs=72.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCCC----------cc-eeeEEEEEEe---------------
Q 024985           18 AERTLVLVGRTGNGKSATGNSIL------GRRAFKSKAGSSG----------VT-KTCEMQRTML---------------   65 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~------~~~~~~~~~~~~~----------~T-~~~~~~~~~~---------------   65 (259)
                      .+..|+++|.+||||||++..|.      |..+......+..          .. ....++....               
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~  178 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF  178 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence            45789999999999999999886      4433222211100          00 0111111100               


Q ss_pred             -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEE
Q 024985           66 -KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVF  144 (259)
Q Consensus        66 -~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~  144 (259)
                       ..+..++||||||...   ....+..++......  ..+|.++||+|++.+..  .....+.+.+..+     +.-+|+
T Consensus       179 ~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~--~~p~e~lLVlda~~Gq~--a~~~a~~F~~~~~-----~~g~Il  246 (429)
T TIGR01425       179 KKENFDIIIVDTSGRHK---QEDSLFEEMLQVAEA--IQPDNIIFVMDGSIGQA--AEAQAKAFKDSVD-----VGSVII  246 (429)
T ss_pred             HhCCCCEEEEECCCCCc---chHHHHHHHHHHhhh--cCCcEEEEEeccccChh--HHHHHHHHHhccC-----CcEEEE
Confidence             0245899999999653   234455566555432  35688999999874322  2334455544333     777999


Q ss_pred             eCCCCCCC
Q 024985          145 TGGNELED  152 (259)
Q Consensus       145 nk~D~~~~  152 (259)
                      ||.|....
T Consensus       247 TKlD~~ar  254 (429)
T TIGR01425       247 TKLDGHAK  254 (429)
T ss_pred             ECccCCCC
Confidence            99998643

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=4.4e-10  Score=87.65  Aligned_cols=119  Identities=12%  Similarity=0.183  Sum_probs=73.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ...|+++|.++||||+|+-.|.-......   ..+.......+  . .++..+.+||.||...       +...+...++
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~T---vtSiepn~a~~--r-~gs~~~~LVD~PGH~r-------lR~kl~e~~~  104 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRGT---VTSIEPNEATY--R-LGSENVTLVDLPGHSR-------LRRKLLEYLK  104 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccCe---eeeeccceeeE--e-ecCcceEEEeCCCcHH-------HHHHHHHHcc
Confidence            37899999999999999988875532111   11111112222  1 3445689999999542       2333333333


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc----cccCeEEEEEeCCCCCCC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK----KVFDYMIVVFTGGNELED  152 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~----~~~~~~ivV~nk~D~~~~  152 (259)
                      .. ..+-+++||+|.. -+...-....+.|...+-.    ....|++|..||.|+...
T Consensus       105 ~~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA  160 (238)
T KOG0090|consen  105 HN-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA  160 (238)
T ss_pred             cc-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence            22 3678999999987 4555445555555444322    223489999999999865

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.12  E-value=1.5e-10  Score=90.04  Aligned_cols=56  Identities=34%  Similarity=0.439  Sum_probs=43.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~   79 (259)
                      ..+|+++|.+|+|||||+|+|++.....++. .+++|+.......    +..+.++||||+
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~-~pg~T~~~~~~~~----~~~~~l~DtPGi  172 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGA-TPGVTKSMQEVHL----DKKVKLLDSPGI  172 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecC-CCCeEcceEEEEe----CCCEEEEECcCC
Confidence            4799999999999999999999988755543 4566665554422    346899999995

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=9.7e-10  Score=89.78  Aligned_cols=176  Identities=16%  Similarity=0.223  Sum_probs=113.7

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCc---------cc-----ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRA---------FK-----SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~---------~~-----~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~   81 (259)
                      +.+..+|..+|..+.|||||..+|+..-.         +.     +.....+.|.......+. ..++.+..+|+||.-|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveye-t~~rhyahVDcPGHaD   87 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEe-cCCceEEeccCCChHH
Confidence            45678999999999999999999864211         00     011123556555544444 4678999999999432


Q ss_pred             CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh
Q 024985           82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~  161 (259)
                             +.+.+    ...+.+.|..|+|+.++++..++.++-+-..++ .|.   ..+++++||+|+.++  .++-+..
T Consensus        88 -------YvKNM----ItgAaqmDgAILVVsA~dGpmPqTrEHiLlarq-vGv---p~ivvflnK~Dmvdd--~ellelV  150 (394)
T COG0050          88 -------YVKNM----ITGAAQMDGAILVVAATDGPMPQTREHILLARQ-VGV---PYIVVFLNKVDMVDD--EELLELV  150 (394)
T ss_pred             -------HHHHH----hhhHHhcCccEEEEEcCCCCCCcchhhhhhhhh-cCC---cEEEEEEecccccCc--HHHHHHH
Confidence                   22222    223345689999999988888887665544444 554   267888999999986  5665555


Q ss_pred             CCCCCchHHHHHHHcCCc----EEEEeCCC---cccccchhHHHHHHHHHHHHHHHhCC
Q 024985          162 GPECPKPLKEILQLCENR----RVLFDNKT---KDAATRTEQVGKLISLVNSVILENGG  213 (259)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~----~~~~~~~~---~~~~~~~~~i~eLl~~i~~~~~~~~~  213 (259)
                      .-    ..++++..++..    ++...+..   .........|.||++.+.++++...+
T Consensus       151 em----EvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per  205 (394)
T COG0050         151 EM----EVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER  205 (394)
T ss_pred             HH----HHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC
Confidence            43    677888877642    22222211   11223456789999999998876543

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=5.2e-09  Score=76.22  Aligned_cols=153  Identities=15%  Similarity=0.186  Sum_probs=90.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      .++-+++|.-|+|||.|+..++.......-..+.++.....+..+. .....+.+|||.|.           +.+.....
T Consensus        11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievs-gqkiklqiwdtagq-----------erfravtr   78 (215)
T KOG0097|consen   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-GQKIKLQIWDTAGQ-----------ERFRAVTR   78 (215)
T ss_pred             eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEec-CcEEEEEEeecccH-----------HHHHHHHH
Confidence            4678899999999999999998776533222222222222222111 22247899999993           35555556


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      .+++++-..+.|.|++.+.+-.. ..||.-.+++..+  ..-++++.||.|+-....-..+         ..++..+.  
T Consensus        79 syyrgaagalmvyditrrstynhlsswl~dar~ltnp--nt~i~lignkadle~qrdv~ye---------eak~faee--  145 (215)
T KOG0097|consen   79 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIFLIGNKADLESQRDVTYE---------EAKEFAEE--  145 (215)
T ss_pred             HHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCC--ceEEEEecchhhhhhcccCcHH---------HHHHHHhh--
Confidence            67888899999999995554443 2333333332222  2257788999997644211112         23344443  


Q ss_pred             CcEEEEeCCCcccccchhHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKL  200 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eL  200 (259)
                      +...++..+++.+    +++++.
T Consensus       146 ngl~fle~saktg----~nveda  164 (215)
T KOG0097|consen  146 NGLMFLEASAKTG----QNVEDA  164 (215)
T ss_pred             cCeEEEEeccccc----CcHHHH
Confidence            3355666666665    455553

>PTZ00099 rab6; Provisional

Probab=99.10  E-value=2.5e-09  Score=83.72  Aligned_cols=114  Identities=16%  Similarity=0.095  Sum_probs=70.0

Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCC
Q 024985           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGG  147 (259)
Q Consensus        69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~  147 (259)
                      ..+.||||||..           .+.......+.++|++|+|+|++++-+... ..++..+....+.  ..|+++|+||+
T Consensus        29 v~l~iwDt~G~e-----------~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~--~~piilVgNK~   95 (176)
T PTZ00099         29 VRLQLWDTAGQE-----------RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK--DVIIALVGNKT   95 (176)
T ss_pred             EEEEEEECCChH-----------HhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECc
Confidence            478999999953           233333445678999999999985433332 2455544443332  34899999999


Q ss_pred             CCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          148 NELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      |+.....-..         ..........+.  .+|..++..+    .++.++++.|.+.+++
T Consensus        96 DL~~~~~v~~---------~e~~~~~~~~~~--~~~e~SAk~g----~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         96 DLGDLRKVTY---------EEGMQKAQEYNT--MFHETSAKAG----HNIKVLFKKIAAKLPN  143 (176)
T ss_pred             ccccccCCCH---------HHHHHHHHHcCC--EEEEEECCCC----CCHHHHHHHHHHHHHh
Confidence            9864310111         112233333333  3455555443    7899999999888866

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.09  E-value=2.7e-09  Score=89.32  Aligned_cols=142  Identities=14%  Similarity=0.176  Sum_probs=97.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccc---------cC----------------------CCCCcceeeEEEEEE
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKS---------KA----------------------GSSGVTKTCEMQRTM   64 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~---------~~----------------------~~~~~T~~~~~~~~~   64 (259)
                      +...++.+-+|...-||||||-.|+-......         ..                      ...|.|.++.+..+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            34568999999999999999988864321100         00                      011677777766554


Q ss_pred             eeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEE
Q 024985           65 LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVF  144 (259)
Q Consensus        65 ~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~  144 (259)
                       ...+.|++.||||.           +++.+-+.....-+|+.|+++|+..++..+.++ -..+..++|.   +++++.+
T Consensus        83 -T~KRkFIiADTPGH-----------eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR-Hs~I~sLLGI---rhvvvAV  146 (431)
T COG2895          83 -TEKRKFIIADTPGH-----------EQYTRNMATGASTADLAILLVDARKGVLEQTRR-HSFIASLLGI---RHVVVAV  146 (431)
T ss_pred             -cccceEEEecCCcH-----------HHHhhhhhcccccccEEEEEEecchhhHHHhHH-HHHHHHHhCC---cEEEEEE
Confidence             46689999999993           244444444455679999999998777666543 4456666775   5899999


Q ss_pred             eCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985          145 TGGNELEDNDETLEDYLGPECPKPLKEILQLCEN  178 (259)
Q Consensus       145 nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (259)
                      ||+|+.+-+++.++++..     ....+.+.++.
T Consensus       147 NKmDLvdy~e~~F~~I~~-----dy~~fa~~L~~  175 (431)
T COG2895         147 NKMDLVDYSEEVFEAIVA-----DYLAFAAQLGL  175 (431)
T ss_pred             eeecccccCHHHHHHHHH-----HHHHHHHHcCC
Confidence            999999876555555443     45556666654

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.08  E-value=4.4e-10  Score=81.85  Aligned_cols=128  Identities=15%  Similarity=0.132  Sum_probs=84.1

Q ss_pred             CCCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHH
Q 024985           13 TSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE   92 (259)
Q Consensus        13 ~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~   92 (259)
                      .|.+....+|+++|--++|||||+..|.+.++....     .|.......+.....-.+++||..|-.           .
T Consensus        11 ks~t~rEirilllGldnAGKTT~LKqL~sED~~hlt-----pT~GFn~k~v~~~g~f~LnvwDiGGqr-----------~   74 (185)
T KOG0074|consen   11 KSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLT-----PTNGFNTKKVEYDGTFHLNVWDIGGQR-----------G   74 (185)
T ss_pred             cCCCcceEEEEEEecCCCcchhHHHHHccCChhhcc-----ccCCcceEEEeecCcEEEEEEecCCcc-----------c
Confidence            356678899999999999999999999988863322     222222233332233589999999843           4


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCC--CCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhh
Q 024985           93 IVKCIGMAKDGIHAVLLVFSVRNR--FSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDY  160 (259)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~  160 (259)
                      +....+.++..+|.+|||+|.++.  +.+...++.+.+.+.--  ...|+.|-.||-|++..  ...++.
T Consensus        75 IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl--~~vpvlIfankQdllta--a~~eei  140 (185)
T KOG0074|consen   75 IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKL--AEVPVLIFANKQDLLTA--AKVEEI  140 (185)
T ss_pred             cchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhh--hccceeehhhhhHHHhh--cchHHH
Confidence            555556678888999999997633  22222344444433211  23489999999999866  444443

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=6.3e-10  Score=100.55  Aligned_cols=116  Identities=17%  Similarity=0.158  Sum_probs=83.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-----------------eCCcEEEEEeCCCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-----------------KDGQVVNVIDTPGLF   80 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-----------------~~~~~~~liDTPG~~   80 (259)
                      ..+.+.++|...+|||-|+..|.+..+....  ..+.|+.+....+..                 ..-..+.+|||||..
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqege--aggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE  551 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGE--AGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE  551 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhcccccccc--ccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence            3578999999999999999999988874333  345555444332210                 111258999999954


Q ss_pred             CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985           81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE  151 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~  151 (259)
                      .           |...-.....-+|.+|+|+|+.+++.++..+.++.|+..-     .|+||.+||+|.+-
T Consensus       552 s-----------FtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rk-----tpFivALNKiDRLY  606 (1064)
T KOG1144|consen  552 S-----------FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRK-----TPFIVALNKIDRLY  606 (1064)
T ss_pred             h-----------hhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcC-----CCeEEeehhhhhhc
Confidence            2           2222233344569999999999999999999999887642     39999999999984

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.08  E-value=3.1e-10  Score=85.54  Aligned_cols=62  Identities=27%  Similarity=0.409  Sum_probs=43.4

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCC
Q 024985           14 SPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF   80 (259)
Q Consensus        14 s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~   80 (259)
                      |+.....+++++|.+|+|||||+|+|++...... ....+.|+.......   + ..+.+|||||+.
T Consensus        78 Sa~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~---~-~~~~i~DtpG~~  139 (141)
T cd01857          78 SALKENATIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFL---T-PTITLCDCPGLV  139 (141)
T ss_pred             EecCCCcEEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEe---C-CCEEEEECCCcC
Confidence            3334445899999999999999999999876432 223455555443322   2 368999999975

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=4.3e-09  Score=87.79  Aligned_cols=174  Identities=17%  Similarity=0.258  Sum_probs=98.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC---ccccc--CCCCCcceeeEEEEEEe--------eCCcEEEEEeCCCCCCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRR---AFKSK--AGSSGVTKTCEMQRTML--------KDGQVVNVIDTPGLFDSSAD   85 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~---~~~~~--~~~~~~T~~~~~~~~~~--------~~~~~~~liDTPG~~~~~~~   85 (259)
                      ..++.++|...+|||||..+|..-.   .|...  ....+.|-+..+.....        .....+.+||+||.-     
T Consensus         7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa-----   81 (522)
T KOG0461|consen    7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA-----   81 (522)
T ss_pred             eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH-----
Confidence            3899999999999999999985322   12211  11234444443333221        122368999999942     


Q ss_pred             hHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCC
Q 024985           86 SEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPEC  165 (259)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~  165 (259)
                            .+.+.+.-...-.|..++|+|+..+...+.-+.|-. -+.+-    +..+||+||+|.+.+.  .....+. ..
T Consensus        82 ------sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLii-g~~~c----~klvvvinkid~lpE~--qr~ski~-k~  147 (522)
T KOG0461|consen   82 ------SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLII-GELLC----KKLVVVINKIDVLPEN--QRASKIE-KS  147 (522)
T ss_pred             ------HHHHHHHhhhheeeeeeEEEehhcccccccchhhhh-hhhhc----cceEEEEeccccccch--hhhhHHH-HH
Confidence                  222332223334589999999985655554333321 22222    3889999999988652  2222221 11


Q ss_pred             CchHHHHHHHcC--CcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          166 PKPLKEILQLCE--NRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       166 ~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      .+.+++-++..+  +......-++.++....+.+.||.+.+.+.+-+.
T Consensus       148 ~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P  195 (522)
T KOG0461|consen  148 AKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP  195 (522)
T ss_pred             HHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence            224444555443  2222333334444455688999999988876443

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.06  E-value=1.3e-09  Score=94.33  Aligned_cols=168  Identities=20%  Similarity=0.270  Sum_probs=104.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccccc-------------CCCCCcceeeEEEEEEee----CCcEEEEEeCCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK-------------AGSSGVTKTCEMQRTMLK----DGQVVNVIDTPGL   79 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~T~~~~~~~~~~~----~~~~~~liDTPG~   79 (259)
                      ...++..++.....|||||...|+........             ....|.|.+.+.....+.    ....+++|||||.
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            45678899999999999999988643210000             112367766665555432    2247999999998


Q ss_pred             CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHh
Q 024985           80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLED  159 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~  159 (259)
                      -|+.-       ++.+++..|    .+.|+|+|++++...+.....=..   +..+  --++.|+||+|+...+++....
T Consensus        87 VDFsY-------EVSRSLAAC----EGalLvVDAsQGveAQTlAN~YlA---le~~--LeIiPViNKIDLP~Adpervk~  150 (603)
T COG0481          87 VDFSY-------EVSRSLAAC----EGALLVVDASQGVEAQTLANVYLA---LENN--LEIIPVLNKIDLPAADPERVKQ  150 (603)
T ss_pred             cceEE-------EehhhHhhC----CCcEEEEECccchHHHHHHHHHHH---HHcC--cEEEEeeecccCCCCCHHHHHH
Confidence            77543       555665555    788999999988877763222111   1211  2789999999987653222211


Q ss_pred             hhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCC
Q 024985          160 YLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQ  214 (259)
Q Consensus       160 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~  214 (259)
                              .+..++.--....+..++++      ..|++++|+.|.+.++...+.
T Consensus       151 --------eIe~~iGid~~dav~~SAKt------G~gI~~iLe~Iv~~iP~P~g~  191 (603)
T COG0481         151 --------EIEDIIGIDASDAVLVSAKT------GIGIEDVLEAIVEKIPPPKGD  191 (603)
T ss_pred             --------HHHHHhCCCcchheeEeccc------CCCHHHHHHHHHhhCCCCCCC
Confidence                    22233322222333444433      278999999999988876554

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=6.1e-09  Score=75.86  Aligned_cols=158  Identities=12%  Similarity=0.137  Sum_probs=94.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ...+|+.+|-.++||||++..|.-...   .. .. .|....+..+. +.+..+++||..|-.           .+....
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~---~~-~i-pTvGFnvetVt-ykN~kfNvwdvGGqd-----------~iRplW   78 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQS---VT-TI-PTVGFNVETVT-YKNVKFNVWDVGGQD-----------KIRPLW   78 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCC---cc-cc-cccceeEEEEE-eeeeEEeeeeccCch-----------hhhHHH
Confidence            467999999999999999999864332   11 11 23333333333 567899999999932           555666


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCC-CcccHHhhhCCCCCchHHHHHH
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELED-NDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~-~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ..++.+..++|||+|..++ ...+ +.-..|....+.+  ...+++|..||-|+... .++++.+++.          ++
T Consensus        79 rhYy~gtqglIFV~Dsa~~-dr~e-eAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le----------Le  146 (180)
T KOG0071|consen   79 RHYYTGTQGLIFVVDSADR-DRIE-EARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE----------LE  146 (180)
T ss_pred             HhhccCCceEEEEEeccch-hhHH-HHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc----------cc
Confidence            6678889999999998644 2221 1222333333332  12378888999998754 1134444433          11


Q ss_pred             HcC-CcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          175 LCE-NRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       175 ~~~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ... .++++-.+++-+.    .++.|=+.++...+
T Consensus       147 ~~r~~~W~vqp~~a~~g----dgL~eglswlsnn~  177 (180)
T KOG0071|consen  147 RIRDRNWYVQPSCALSG----DGLKEGLSWLSNNL  177 (180)
T ss_pred             cccCCccEeeccccccc----hhHHHHHHHHHhhc
Confidence            223 3455555555444    56766666665543

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.05  E-value=1.4e-10  Score=88.33  Aligned_cols=61  Identities=30%  Similarity=0.336  Sum_probs=36.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccC-C-----CCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKA-G-----SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~-~-----~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~   83 (259)
                      ..+++|+|+||||||||+|+|++...+.++. +     ...+|+....+..    .....+|||||+.+..
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l----~~g~~iIDTPGf~~~~  101 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL----PDGGYIIDTPGFRSFG  101 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE----TTSEEEECSHHHHT--
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec----CCCcEEEECCCCCccc
Confidence            3789999999999999999999985433321 1     1224444444432    1245799999987543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01855 YqeH YqeH

Probab=99.04  E-value=3.1e-10  Score=89.95  Aligned_cols=57  Identities=28%  Similarity=0.316  Sum_probs=40.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccc-------ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFK-------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~-------~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~   79 (259)
                      ..+++++|.+|+|||||+|+|++.....       .....+++|+.......    +..+.+|||||+
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence            4689999999999999999999865422       11223456665554432    225799999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.03  E-value=2.1e-10  Score=86.76  Aligned_cols=118  Identities=21%  Similarity=0.118  Sum_probs=75.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccC-CCCCcceeeEEEEEE-eeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKA-GSSGVTKTCEMQRTM-LKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~-~~~~~T~~~~~~~~~-~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      .-.+++++|..++||||+|.+.+..-. ..+. .+.++..  ....+. ...+..+.+|||.|-.           ++..
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgif-TkdykktIgvdf--lerqi~v~~Edvr~mlWdtagqe-----------EfDa   84 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIF-TKDYKKTIGVDF--LERQIKVLIEDVRSMLWDTAGQE-----------EFDA   84 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhcccc-ccccccccchhh--hhHHHHhhHHHHHHHHHHhccch-----------hHHH
Confidence            357999999999999999999984432 1111 1111111  000011 1223467789999943           4444


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ..+.+++++.+.++|+.-+++.+.+. .+|-+.+..-.+   .-|.++|-||+|++++
T Consensus        85 ItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~---~IPtV~vqNKIDlved  139 (246)
T KOG4252|consen   85 ITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETE---RIPTVFVQNKIDLVED  139 (246)
T ss_pred             HHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhc---cCCeEEeeccchhhHh
Confidence            44567889999999999887766553 344444444333   2499999999999976

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.03  E-value=6.5e-10  Score=85.20  Aligned_cols=57  Identities=25%  Similarity=0.390  Sum_probs=42.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~   79 (259)
                      ...+|+++|.+|+|||||+|+|++......+. .+++|+......    .+..+.++||||+
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~-~~~~t~~~~~~~----~~~~~~liDtPG~  155 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGN-VPGTTTSQQEVK----LDNKIKLLDTPGI  155 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccC-CCCcccceEEEE----ecCCEEEEECCCC
Confidence            46889999999999999999999987544332 245565555432    2356899999995

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=99.02  E-value=1.4e-09  Score=91.67  Aligned_cols=65  Identities=25%  Similarity=0.392  Sum_probs=48.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS   86 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~   86 (259)
                      ....+|+++|.||+|||||+|+|++.....++. .+++|+......    -+..+.+|||||+..+....
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~l~DtPGi~~~~~~~  183 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWIK----LGKGLELLDTPGILWPKLED  183 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEEE----eCCcEEEEECCCcCCCCCCc
Confidence            345789999999999999999999987644432 456676665432    23468999999998765433

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=98.99  E-value=1.1e-08  Score=75.73  Aligned_cols=167  Identities=14%  Similarity=0.133  Sum_probs=97.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ..-..+|.++|.+..|||||+-...+...-..-....|.-..-....+. .....+.+||..|-           +++..
T Consensus        17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~-~t~IsfSIwdlgG~-----------~~~~n   84 (205)
T KOG1673|consen   17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIR-GTDISFSIWDLGGQ-----------REFIN   84 (205)
T ss_pred             cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEec-ceEEEEEEEecCCc-----------Hhhhc
Confidence            3346899999999999999998888776411111111211111111111 12347899999993           36667


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ++..+-.++-++||++|.+.+.+-.  .+.+|.++..|.....--++|.||.|..-.-+.++.+-+.    ...+...+.
T Consensus        85 ~lPiac~dsvaIlFmFDLt~r~TLn--Si~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~----~qar~YAk~  158 (205)
T KOG1673|consen   85 MLPIACKDSVAILFMFDLTRRSTLN--SIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETIS----RQARKYAKV  158 (205)
T ss_pred             cCceeecCcEEEEEEEecCchHHHH--HHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHH----HHHHHHHHH
Confidence            7777778889999999999544332  2444555544443333457899999986433233333221    234445555


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      ..... +|.+....     -++.++++.+..
T Consensus       159 mnAsL-~F~Sts~s-----INv~KIFK~vlA  183 (205)
T KOG1673|consen  159 MNASL-FFCSTSHS-----INVQKIFKIVLA  183 (205)
T ss_pred             hCCcE-EEeecccc-----ccHHHHHHHHHH
Confidence            44444 44443322     467777776543

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=98.99  E-value=2.7e-09  Score=83.47  Aligned_cols=163  Identities=18%  Similarity=0.066  Sum_probs=96.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee-CCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK-DGQ--VVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-~~~--~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ..++++||..++|||+|+.+...... +....   .|..-.+...... ++.  .+.+|||.|-.+-           .+
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~~f-p~~yv---PTVFdnys~~v~V~dg~~v~L~LwDTAGqedY-----------Dr   68 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTNAF-PEEYV---PTVFDNYSANVTVDDGKPVELGLWDTAGQEDY-----------DR   68 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccCcC-ccccc---CeEEccceEEEEecCCCEEEEeeeecCCCccc-----------cc
Confidence            47899999999999999988875543 32221   1222111111123 243  6899999995532           22


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHh--HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC----CCCchH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEE--GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP----ECPKPL  169 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~----~~~~~l  169 (259)
                      .-..+++++|+||+|+++.++.+..  ...|+..++....   ..|+++|+||.|+..+. ..++....+    -.....
T Consensus        69 lRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp---~vpiiLVGtk~DLr~d~-~~~~~l~~~~~~~Vt~~~g  144 (198)
T KOG0393|consen   69 LRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP---NVPIILVGTKADLRDDP-STLEKLQRQGLEPVTYEQG  144 (198)
T ss_pred             ccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCC---CCCEEEEeehHHhhhCH-HHHHHHHhccCCcccHHHH
Confidence            2245889999999999988555444  3566666666442   34999999999998442 233222211    112234


Q ss_pred             HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHH
Q 024985          170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVN  205 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~  205 (259)
                      ..+.+..+. ..++..++...    .++.+.++...
T Consensus       145 ~~lA~~iga-~~y~EcSa~tq----~~v~~vF~~a~  175 (198)
T KOG0393|consen  145 LELAKEIGA-VKYLECSALTQ----KGVKEVFDEAI  175 (198)
T ss_pred             HHHHHHhCc-ceeeeehhhhh----CCcHHHHHHHH
Confidence            555666553 23444443322    45666666443

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=98.99  E-value=1.4e-09  Score=78.47  Aligned_cols=159  Identities=11%  Similarity=0.115  Sum_probs=94.1

Q ss_pred             EEEcCCCCcHHHHHHHHhCCCccccc-CCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcC
Q 024985           23 VLVGRTGNGKSATGNSILGRRAFKSK-AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAK  101 (259)
Q Consensus        23 ~l~G~~g~GKSslin~l~~~~~~~~~-~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~  101 (259)
                      +++|.+++|||.|+-.+-........ .++.+.........+. .....+.+|||.|.           +.+.+....++
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~-~~kvklqiwdtagq-----------erfrsvt~ayy   68 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMD-DKKVKLQIWDTAGQ-----------ERFRSVTHAYY   68 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccC-CcEEEEEEeeccch-----------HHHhhhhHhhh
Confidence            37899999999987655433321110 0111111111111111 12247899999993           35666667788


Q ss_pred             CCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcE
Q 024985          102 DGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRR  180 (259)
Q Consensus       102 ~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (259)
                      +.+|+++++.|+.++.+... ..||..+.+.-....  .++++.||+|+..+  ..+       ....=+.+.+..+.++
T Consensus        69 rda~allllydiankasfdn~~~wlsei~ey~k~~v--~l~llgnk~d~a~e--r~v-------~~ddg~kla~~y~ipf  137 (192)
T KOG0083|consen   69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAV--ALMLLGNKCDLAHE--RAV-------KRDDGEKLAEAYGIPF  137 (192)
T ss_pred             cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhH--hHhhhccccccchh--hcc-------ccchHHHHHHHHCCCc
Confidence            99999999999987766654 678888888433323  67899999998754  111       1223445666766654


Q ss_pred             EEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          181 VLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       181 ~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .  ..+++++    -++.-.+-.|.+-+.+
T Consensus       138 m--etsaktg----~nvd~af~~ia~~l~k  161 (192)
T KOG0083|consen  138 M--ETSAKTG----FNVDLAFLAIAEELKK  161 (192)
T ss_pred             e--ecccccc----ccHhHHHHHHHHHHHH
Confidence            4  4444443    3455545555544443

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=2.4e-09  Score=80.81  Aligned_cols=168  Identities=13%  Similarity=0.057  Sum_probs=96.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCc-ccccCC--CCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRA-FKSKAG--SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI   93 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~-~~~~~~--~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~   93 (259)
                      +....|+++|.-+||||||+-++--... .-.+..  ....|.......+. ..+.++.+||.-|-.           ..
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~-v~~~~l~fwdlgGQe-----------~l   82 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE-VCNAPLSFWDLGGQE-----------SL   82 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee-eccceeEEEEcCChH-----------HH
Confidence            3457899999999999999987632211 001111  12234444444455 457799999998832           22


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCC--CCHhHHHHHHH-HHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHH
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNR--FSEEGGAAIHS-LESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLK  170 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~--~~~~~~~~l~~-l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~  170 (259)
                      .+....++..+|+++||+|++++  +... ...++. +.+-.-  ...|+++..||-|+-+.  .+..++-.     .+.
T Consensus        83 rSlw~~yY~~~H~ii~viDa~~~eR~~~~-~t~~~~v~~~E~l--eg~p~L~lankqd~q~~--~~~~El~~-----~~~  152 (197)
T KOG0076|consen   83 RSLWKKYYWLAHGIIYVIDATDRERFEES-KTAFEKVVENEKL--EGAPVLVLANKQDLQNA--MEAAELDG-----VFG  152 (197)
T ss_pred             HHHHHHHHHHhceeEEeecCCCHHHHHHH-HHHHHHHHHHHHh--cCCchhhhcchhhhhhh--hhHHHHHH-----Hhh
Confidence            22233345566999999999842  3222 222322 222111  12399999999998765  33333221     111


Q ss_pred             HHHHHcCCcEEEEeCC-CcccccchhHHHHHHHHHHHHHHHh
Q 024985          171 EILQLCENRRVLFDNK-TKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~-~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      . .+..+.+.+.|... +-++    +|+.|-+.++...++.+
T Consensus       153 ~-~e~~~~rd~~~~pvSal~g----egv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  153 L-AELIPRRDNPFQPVSALTG----EGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             h-hhhcCCccCccccchhhhc----ccHHHHHHHHHHHHhhc
Confidence            1 34445555555443 3333    77888888887777766

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=98.96  E-value=1.5e-08  Score=74.94  Aligned_cols=123  Identities=17%  Similarity=0.107  Sum_probs=74.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh-CCCcccccCCCCCcceeeEEE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSIL-GRRAFKSKAGSSGVTKTCEMQ-RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKE   92 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~-~~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~   92 (259)
                      ....+|+++|--++|||+++..|+ |.......   .-.|....+. .++...|  ..+.|.||.|+...   +.++.+.
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e---~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~---~~eLprh   80 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTE---LHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG---QQELPRH   80 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCc---cccchhhheeEeeecCCChhheEEEeecccccCc---hhhhhHh
Confidence            345799999999999999997765 44332221   1223222222 2232223  27999999998754   2222222


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      +       ..-+|++++|++..+.-+..-.++|+.-.+.....-..|++|+.|++|+.++
T Consensus        81 y-------~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p  133 (198)
T KOG3883|consen   81 Y-------FQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP  133 (198)
T ss_pred             H-------hccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence            2       2234999999998744444444444433332333334599999999998765

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=1.9e-08  Score=89.22  Aligned_cols=141  Identities=21%  Similarity=0.287  Sum_probs=91.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC---------------------Cccc--------ccCCCCCcceeeEEEEEEeeC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGR---------------------RAFK--------SKAGSSGVTKTCEMQRTMLKD   67 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~---------------------~~~~--------~~~~~~~~T~~~~~~~~~~~~   67 (259)
                      .....++++|...+|||||+-.|+-.                     .-|.        ......|+|-+.....++ ..
T Consensus       175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe-s~  253 (603)
T KOG0458|consen  175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE-SK  253 (603)
T ss_pred             ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe-cC
Confidence            35689999999999999999887511                     0000        001122566555555554 45


Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-----C--CHhHHHHHHHHHHHhcccccCeE
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-----F--SEEGGAAIHSLESLFGKKVFDYM  140 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-----~--~~~~~~~l~~l~~~~~~~~~~~~  140 (259)
                      ...++|+|+||..++           ..-+...+..+|+.++|+|++.+     +  ..+.++....++. +|.   ...
T Consensus       254 ~~~~tliDaPGhkdF-----------i~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~-Lgi---~ql  318 (603)
T KOG0458|consen  254 SKIVTLIDAPGHKDF-----------IPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS-LGI---SQL  318 (603)
T ss_pred             ceeEEEecCCCcccc-----------chhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH-cCc---ceE
Confidence            668999999996543           22223345677999999998732     1  2234555555555 563   489


Q ss_pred             EEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH-HHcCC
Q 024985          141 IVVFTGGNELEDNDETLEDYLGPECPKPLKEIL-QLCEN  178 (259)
Q Consensus       141 ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~  178 (259)
                      +|++||+|.++.+.+.++++..     .+...+ +.|+.
T Consensus       319 ivaiNKmD~V~Wsq~RF~eIk~-----~l~~fL~~~~gf  352 (603)
T KOG0458|consen  319 IVAINKMDLVSWSQDRFEEIKN-----KLSSFLKESCGF  352 (603)
T ss_pred             EEEeecccccCccHHHHHHHHH-----HHHHHHHHhcCc
Confidence            9999999999887666666544     344445 67764

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.96  E-value=4.5e-10  Score=97.56  Aligned_cols=122  Identities=19%  Similarity=0.194  Sum_probs=68.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcc----cccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAF----KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~----~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ..++++|.+|||||||+|+|++....    ......+++|........    +..+.++||||+.....-...+..+-..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~----~~~~~l~DtPG~~~~~~~~~~l~~~~l~  230 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL----DDGHSLYDTPGIINSHQMAHYLDKKDLK  230 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe----CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence            58999999999999999999986421    122334556655443321    2346799999997542101111111111


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE  151 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~  151 (259)
                      .+ ......+.+.++++..+.+.......++.+..   .  ...+.+.+++.+.+.
T Consensus       231 ~~-~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~--~~~~~~~~~~~~~~h  280 (360)
T TIGR03597       231 YI-TPKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---E--KTSFTFYVSNELNIH  280 (360)
T ss_pred             hc-CCCCccCceEEEeCCCCEEEEceEEEEEEecC---C--ceEEEEEccCCceeE
Confidence            11 11235677888888765544444333443322   1  125666677766654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.96  E-value=2.7e-09  Score=84.31  Aligned_cols=127  Identities=18%  Similarity=0.227  Sum_probs=81.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHH-HHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE-IVKC   96 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~-~~~~   96 (259)
                      ...+|+|+|++|+||||+=-.++..... -+....|.|.++......+.++.-+.+||..|-.       ...+. +...
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a-~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe-------~fmen~~~~q   74 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIFANYIA-RDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE-------EFMENYLSSQ   74 (295)
T ss_pred             ccceEEEeccCCCCccccchhhhhhhhh-hhhhccCCcceeeehhhhhhhhheeehhccCCcH-------HHHHHHHhhc
Confidence            3578999999999999976666544322 2234566777777666665666789999999832       12222 2222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHH-HHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAI-HSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l-~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      -......++++++|+|+..+--..|.... +.|..++.......+++.++|+|++..
T Consensus        75 ~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~  131 (295)
T KOG3886|consen   75 EDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQE  131 (295)
T ss_pred             chhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence            23445678999999999844333332222 223333444444588999999999976

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.95  E-value=3.7e-09  Score=88.70  Aligned_cols=62  Identities=26%  Similarity=0.355  Sum_probs=46.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA   84 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~   84 (259)
                      ...+|+++|.||+|||||+|+|++.....++ ..+++|+.......    +..+.++||||+.....
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~----~~~~~l~DtPG~~~~~~  178 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKL----SDGLELLDTPGILWPKF  178 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEe----CCCEEEEECCCcccCCC
Confidence            4578999999999999999999988754443 34566666554322    34689999999975543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01856 YlqF YlqF

Probab=98.95  E-value=2.6e-09  Score=83.27  Aligned_cols=58  Identities=28%  Similarity=0.417  Sum_probs=42.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF   80 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~   80 (259)
                      ..++++++|.+|+|||||+|+|++...... ....++|........   + ..+.+|||||+.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~---~-~~~~~iDtpG~~  171 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKI---S-PGIYLLDTPGIL  171 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEe---c-CCEEEEECCCCC
Confidence            347899999999999999999998775433 223455655554432   2 568899999973

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.93  E-value=5.8e-08  Score=82.43  Aligned_cols=25  Identities=20%  Similarity=0.247  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      .....|+++|++|+|||||++.+..
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~   56 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGM   56 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            3568899999999999999999764

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.92  E-value=2.2e-09  Score=92.44  Aligned_cols=59  Identities=27%  Similarity=0.385  Sum_probs=40.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC------CcceeeEEEEEEeeCCcEEEEEeCCCCCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS------GVTKTCEMQRTMLKDGQVVNVIDTPGLFDS   82 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~~~liDTPG~~~~   82 (259)
                      ..++|+|.||||||||||+|++.....++.-+.      .+|+....+...  .+  ..||||||+...
T Consensus       206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~--~~--~~liDTPGir~~  270 (347)
T PRK12288        206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP--HG--GDLIDSPGVREF  270 (347)
T ss_pred             CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec--CC--CEEEECCCCCcc
Confidence            358999999999999999999987654432211      244455544332  22  259999998753

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=9.8e-09  Score=90.69  Aligned_cols=118  Identities=19%  Similarity=0.227  Sum_probs=78.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC-CCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG-SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~-~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ..++..++++|++|+||||||.+|....--..... ..+.|.       .....+.+.+..+|.  +        ...+.
T Consensus        66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv-------vsgK~RRiTflEcp~--D--------l~~mi  128 (1077)
T COG5192          66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV-------VSGKTRRITFLECPS--D--------LHQMI  128 (1077)
T ss_pred             CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEE-------eecceeEEEEEeChH--H--------HHHHH
Confidence            34556677999999999999999975431111111 111111       113446899999994  1        22344


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHh
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLED  159 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~  159 (259)
                      ...+.    +|++|+++|+.-++..+..++|..+... |.   ..++-|+|+.|+.... .+++.
T Consensus       129 DvaKI----aDLVlLlIdgnfGfEMETmEFLnil~~H-Gm---PrvlgV~ThlDlfk~~-stLr~  184 (1077)
T COG5192         129 DVAKI----ADLVLLLIDGNFGFEMETMEFLNILISH-GM---PRVLGVVTHLDLFKNP-STLRS  184 (1077)
T ss_pred             hHHHh----hheeEEEeccccCceehHHHHHHHHhhc-CC---CceEEEEeecccccCh-HHHHH
Confidence            43333    4999999999989998888999888763 32   3788999999998653 44443

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.91  E-value=6.1e-09  Score=84.51  Aligned_cols=134  Identities=16%  Similarity=0.213  Sum_probs=80.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee-CC--cEEEEEeCCCCCCCCCChHH-------
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK-DG--QVVNVIDTPGLFDSSADSEF-------   88 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-~~--~~~~liDTPG~~~~~~~~~~-------   88 (259)
                      .++|+-||.+|.|||||+.+|++...-....+..-.+.......+... .+  ..+.++||.|+++.....+.       
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy  121 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY  121 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence            589999999999999999999987742211111111111111111111 12  27899999999975433221       


Q ss_pred             HHHHHHHHH----------hh-cCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCccc
Q 024985           89 VSKEIVKCI----------GM-AKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDET  156 (259)
Q Consensus        89 ~~~~~~~~~----------~~-~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~  156 (259)
                      +-.++..++          .. -...+|+.||.+.++ +++...|.-.++.|..      ..++|.|+-|.|.+..  .+
T Consensus       122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds------kVNIIPvIAKaDtisK--~e  193 (406)
T KOG3859|consen  122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS------KVNIIPVIAKADTISK--EE  193 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh------hhhhHHHHHHhhhhhH--HH
Confidence            111111111          11 124679999999887 5566666555555543      2388999999998866  45


Q ss_pred             HHhh
Q 024985          157 LEDY  160 (259)
Q Consensus       157 ~~~~  160 (259)
                      +..|
T Consensus       194 L~~F  197 (406)
T KOG3859|consen  194 LKRF  197 (406)
T ss_pred             HHHH
Confidence            5443

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=5.1e-09  Score=88.90  Aligned_cols=89  Identities=20%  Similarity=0.206  Sum_probs=67.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC------------C-----cEEEEEeCCCCCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD------------G-----QVVNVIDTPGLFDS   82 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~------------~-----~~~~liDTPG~~~~   82 (259)
                      +++.+||.||||||||+|+++....  ....++.+|.++....+...+            .     .++.|+|.+|+-..
T Consensus         3 l~~GIVGlPNVGKSTlFnAlT~~~a--~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G   80 (372)
T COG0012           3 LKIGIVGLPNVGKSTLFNALTKAGA--EIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG   80 (372)
T ss_pred             ceeEEecCCCCcHHHHHHHHHcCCc--cccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence            6899999999999999999998884  334466777776655432111            1     26899999999877


Q ss_pred             CCChHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985           83 SADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR  114 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (259)
                      ....+.+..++...+.    .+|+|+.|+++.
T Consensus        81 As~GeGLGNkFL~~IR----evdaI~hVVr~f  108 (372)
T COG0012          81 ASKGEGLGNKFLDNIR----EVDAIIHVVRCF  108 (372)
T ss_pred             cccCCCcchHHHHhhh----hcCeEEEEEEec
Confidence            7767777778776654    559999999864

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.88  E-value=7.3e-09  Score=85.97  Aligned_cols=60  Identities=30%  Similarity=0.368  Sum_probs=40.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccC------CCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKA------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS   82 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~------~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~   82 (259)
                      ....+|+|.||||||||+|+|.+.....++.      ....+|+....+... .+|   .||||||+...
T Consensus       164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~-~gG---~iiDTPGf~~~  229 (301)
T COG1162         164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP-GGG---WIIDTPGFRSL  229 (301)
T ss_pred             CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC-CCC---EEEeCCCCCcc
Confidence            3578899999999999999999865333221      112345555555432 233   58999998754

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.88  E-value=2e-08  Score=79.76  Aligned_cols=94  Identities=18%  Similarity=0.072  Sum_probs=55.9

Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGN  148 (259)
Q Consensus        69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D  148 (259)
                      ..+++|||||...   .......++...+...  .++-+++|++++.+.  .+...+....+.++     +.-+|+||.|
T Consensus        84 ~D~vlIDT~Gr~~---~d~~~~~el~~~~~~~--~~~~~~LVlsa~~~~--~~~~~~~~~~~~~~-----~~~lIlTKlD  151 (196)
T PF00448_consen   84 YDLVLIDTAGRSP---RDEELLEELKKLLEAL--NPDEVHLVLSATMGQ--EDLEQALAFYEAFG-----IDGLILTKLD  151 (196)
T ss_dssp             SSEEEEEE-SSSS---THHHHHHHHHHHHHHH--SSSEEEEEEEGGGGG--HHHHHHHHHHHHSS-----TCEEEEESTT
T ss_pred             CCEEEEecCCcch---hhHHHHHHHHHHhhhc--CCccceEEEecccCh--HHHHHHHHHhhccc-----CceEEEEeec
Confidence            4699999999763   2334445555544433  557889999987332  23333333444344     4457899999


Q ss_pred             CCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCC
Q 024985          149 ELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKT  187 (259)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  187 (259)
                      ....             --.+-.+....+-++.++.+..
T Consensus       152 et~~-------------~G~~l~~~~~~~~Pi~~it~Gq  177 (196)
T PF00448_consen  152 ETAR-------------LGALLSLAYESGLPISYITTGQ  177 (196)
T ss_dssp             SSST-------------THHHHHHHHHHTSEEEEEESSS
T ss_pred             CCCC-------------cccceeHHHHhCCCeEEEECCC
Confidence            8754             2233345555677777777653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK12289 GTPase RsgA; Reviewed

Probab=98.87  E-value=3.4e-09  Score=91.32  Aligned_cols=59  Identities=25%  Similarity=0.356  Sum_probs=39.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC------CcceeeEEEEEEeeCCcEEEEEeCCCCCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS------GVTKTCEMQRTMLKDGQVVNVIDTPGLFDS   82 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~~~liDTPG~~~~   82 (259)
                      ..++|+|+||||||||||+|++.....++..+.      .+|+....+..  ..+  ..||||||+...
T Consensus       173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l--~~g--~~liDTPG~~~~  237 (352)
T PRK12289        173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL--PNG--GLLADTPGFNQP  237 (352)
T ss_pred             ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC--CCC--cEEEeCCCcccc
Confidence            358999999999999999999876544332111      14555554432  222  279999998643

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.85  E-value=1.6e-08  Score=100.04  Aligned_cols=131  Identities=15%  Similarity=0.268  Sum_probs=82.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCccccc------CCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCC----hHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSK------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD----SEFV   89 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~------~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~----~~~~   89 (259)
                      +=-+++|++|+||||+|+.- |...+...      ....+.|..|.-     .-...-++|||+|.+....+    ....
T Consensus       112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w-----wf~~~avliDtaG~y~~~~~~~~~~~~~  185 (1169)
T TIGR03348       112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW-----WFTDEAVLIDTAGRYTTQDSDPEEDAAA  185 (1169)
T ss_pred             CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce-----EecCCEEEEcCCCccccCCCcccccHHH
Confidence            34577899999999999776 44432211      111234444432     22345679999997754321    2334


Q ss_pred             HHHHHHHHhhc--CCCccEEEEEEeCCCCCC--Hh--------HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccH
Q 024985           90 SKEIVKCIGMA--KDGIHAVLLVFSVRNRFS--EE--------GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETL  157 (259)
Q Consensus        90 ~~~~~~~~~~~--~~~~~~il~v~d~~~~~~--~~--------~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~  157 (259)
                      +..+...+...  ...+++||+++|+..-+.  ..        -+..+..+.+.+|...  |++||+||+|++..    +
T Consensus       186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~--PVYvv~Tk~Dll~G----F  259 (1169)
T TIGR03348       186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARF--PVYLVLTKADLLAG----F  259 (1169)
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEEecchhhcC----H
Confidence            56666666544  357899999999872222  21        1334556666677766  99999999999954    5


Q ss_pred             HhhhC
Q 024985          158 EDYLG  162 (259)
Q Consensus       158 ~~~~~  162 (259)
                      .+|..
T Consensus       260 ~~~f~  264 (1169)
T TIGR03348       260 EEFFA  264 (1169)
T ss_pred             HHHHH
Confidence            55554

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.84  E-value=8.2e-09  Score=88.24  Aligned_cols=61  Identities=26%  Similarity=0.406  Sum_probs=46.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA   84 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~   84 (259)
                      ..+++++|.||||||||||+|.+.....++. .+|.|...+....    +..+.++||||+.....
T Consensus       132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~-~PG~Tk~~q~i~~----~~~i~LlDtPGii~~~~  192 (322)
T COG1161         132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSN-RPGTTKGIQWIKL----DDGIYLLDTPGIIPPKF  192 (322)
T ss_pred             ceEEEEEcCCCCcHHHHHHHHhcccceeeCC-CCceecceEEEEc----CCCeEEecCCCcCCCCc
Confidence            4789999999999999999999999744433 4566665554432    34589999999986544

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=2.3e-08  Score=82.78  Aligned_cols=166  Identities=17%  Similarity=0.238  Sum_probs=96.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccc-ccCCCCCcceeeEEEE-------------------------EEeeCCcE
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFK-SKAGSSGVTKTCEMQR-------------------------TMLKDGQV   70 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~-~~~~~~~~T~~~~~~~-------------------------~~~~~~~~   70 (259)
                      ++..+|.++|....|||||..+|.|-.... +..-..+.|.+..+..                         ....--+.
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            567899999999999999999998753210 0000111221111110                         00000136


Q ss_pred             EEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CCHhHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 024985           71 VNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-FSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNE  149 (259)
Q Consensus        71 ~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~  149 (259)
                      +.|+|.||..           -+...+.+.+.-.|+.|+|+.++.+ ..++..+-|-.|.= .|.   ++++||-||+|+
T Consensus        88 VSfVDaPGHe-----------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleI-igi---k~iiIvQNKIDl  152 (415)
T COG5257          88 VSFVDAPGHE-----------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEI-IGI---KNIIIVQNKIDL  152 (415)
T ss_pred             EEEeeCCchH-----------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhh-hcc---ceEEEEecccce
Confidence            8999999932           2233333333345899999999833 44555555554433 342   599999999999


Q ss_pred             CCCCcccHHhhhCCCCCchHHHHHHHcCC------cEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985          150 LEDNDETLEDYLGPECPKPLKEILQLCEN------RRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG  213 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~  213 (259)
                      .... ..+++|         +++.+...+      ++..+++      ..+-++.-|++.|.+.++....
T Consensus       153 V~~E-~AlE~y---------~qIk~FvkGt~Ae~aPIIPiSA------~~~~NIDal~e~i~~~IptP~r  206 (415)
T COG5257         153 VSRE-RALENY---------EQIKEFVKGTVAENAPIIPISA------QHKANIDALIEAIEKYIPTPER  206 (415)
T ss_pred             ecHH-HHHHHH---------HHHHHHhcccccCCCceeeehh------hhccCHHHHHHHHHHhCCCCcc
Confidence            8641 333333         233333332      2333333      3447899999999999876533

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.84  E-value=5.5e-09  Score=83.65  Aligned_cols=90  Identities=18%  Similarity=0.281  Sum_probs=64.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ..-+|+++|.|++|||||+..|+....  ...+...+|-.|....+. +++..+.++|.||+.....+...-.+++    
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~-y~ga~IQllDLPGIieGAsqgkGRGRQv----  133 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIH-YNGANIQLLDLPGIIEGASQGKGRGRQV----  133 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEE-ecCceEEEecCcccccccccCCCCCceE----
Confidence            347999999999999999999987664  223344455556555444 7889999999999987654433323332    


Q ss_pred             hhcCCCccEEEEEEeCC
Q 024985           98 GMAKDGIHAVLLVFSVR  114 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~  114 (259)
                      ...++-+|+++.|+|++
T Consensus       134 iavArtaDlilMvLDat  150 (364)
T KOG1486|consen  134 IAVARTADLILMVLDAT  150 (364)
T ss_pred             EEEeecccEEEEEecCC
Confidence            23456779999999997

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=5.7e-08  Score=83.62  Aligned_cols=120  Identities=15%  Similarity=0.236  Sum_probs=81.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh--CCCcccccC------C------------CCCcceeeEEEEEEeeCCcEEEEEeC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSIL--GRRAFKSKA------G------------SSGVTKTCEMQRTMLKDGQVVNVIDT   76 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~--~~~~~~~~~------~------------~~~~T~~~~~~~~~~~~~~~~~liDT   76 (259)
                      ...++.+++-.|.+|||||...|+  |......+.      .            ..|.+.......+. +.+..++|.||
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~-Y~~~~iNLLDT   88 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFD-YADCLVNLLDT   88 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEec-cCCeEEeccCC
Confidence            345789999999999999997764  222111110      0            01222333333344 67889999999


Q ss_pred             CCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC
Q 024985           77 PGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDN  153 (259)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~  153 (259)
                      ||..|.+.       ...+.+.    -+|..+.|+|+-.++.+....+++..+- .+.    |++-.+||+|....+
T Consensus        89 PGHeDFSE-------DTYRtLt----AvDsAvMVIDaAKGiE~qT~KLfeVcrl-R~i----PI~TFiNKlDR~~rd  149 (528)
T COG4108          89 PGHEDFSE-------DTYRTLT----AVDSAVMVIDAAKGIEPQTLKLFEVCRL-RDI----PIFTFINKLDREGRD  149 (528)
T ss_pred             CCccccch-------hHHHHHH----hhheeeEEEecccCccHHHHHHHHHHhh-cCC----ceEEEeeccccccCC
Confidence            99887643       2223222    2389999999988999999888886544 444    999999999987653

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.84  E-value=2.7e-07  Score=81.54  Aligned_cols=133  Identities=19%  Similarity=0.213  Sum_probs=81.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC--------------------------------------------
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS--------------------------------------------   52 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~--------------------------------------------   52 (259)
                      +.-++|++||.-++||||++..+.....|+.+.+..                                            
T Consensus       306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~  385 (980)
T KOG0447|consen  306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL  385 (980)
T ss_pred             ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence            456899999999999999999998777776553311                                            


Q ss_pred             --------CcceeeEEEEEEe-eCC-cEEEEEeCCCCCCCCCC--hHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHh
Q 024985           53 --------GVTKTCEMQRTML-KDG-QVVNVIDTPGLFDSSAD--SEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEE  120 (259)
Q Consensus        53 --------~~T~~~~~~~~~~-~~~-~~~~liDTPG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~  120 (259)
                              |+|.......... ..| ..++++|.||...+...  .......|..+.+..-..+++||+|+.-. ....+
T Consensus       386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDAE  464 (980)
T KOG0447|consen  386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDAE  464 (980)
T ss_pred             HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Ccchh
Confidence                    2232222221211 112 36999999998754321  12334455555555666789999998643 22222


Q ss_pred             HHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          121 GGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       121 ~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      -..+-..+.. . .+..+.+|+|+||.|+.+.
T Consensus       465 RSnVTDLVsq-~-DP~GrRTIfVLTKVDlAEk  494 (980)
T KOG0447|consen  465 RSIVTDLVSQ-M-DPHGRRTIFVLTKVDLAEK  494 (980)
T ss_pred             hhhHHHHHHh-c-CCCCCeeEEEEeecchhhh
Confidence            2223333333 2 2334589999999998854

>TIGR00092 GTP-binding protein YchF

Probab=98.83  E-value=1.6e-08  Score=86.90  Aligned_cols=90  Identities=16%  Similarity=0.075  Sum_probs=63.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC----------------cEEEEEeCCCCCCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG----------------QVVNVIDTPGLFDSS   83 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~----------------~~~~liDTPG~~~~~   83 (259)
                      .++.++|.|++|||||+|+|++...... ..++.+|..+....+...+.                ..+.++|.||+....
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~-a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA   81 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEA-ANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA   81 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCcccc-CCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence            6899999999999999999998874122 22355556655554443221                268999999998654


Q ss_pred             CChHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985           84 ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR  114 (259)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (259)
                      .....+...+...+..+    |++++|++..
T Consensus        82 s~g~Glgn~fL~~ir~~----d~l~hVvr~f  108 (368)
T TIGR00092        82 SKGEGLGNQFLANIREV----DIIQHVVRCF  108 (368)
T ss_pred             hcccCcchHHHHHHHhC----CEEEEEEeCC
Confidence            44444556666665544    9999999973

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.82  E-value=1.7e-09  Score=88.48  Aligned_cols=77  Identities=16%  Similarity=0.089  Sum_probs=32.0

Q ss_pred             EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCC
Q 024985           70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGG  147 (259)
Q Consensus        70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~  147 (259)
                      .+.++||||-.+.-. .......+.+.+..  ...-++++++|+....++...  .++-.+.-.+.-  .-|.+.|+||+
T Consensus        92 ~y~l~DtPGQiElf~-~~~~~~~i~~~L~~--~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~--~lP~vnvlsK~  166 (238)
T PF03029_consen   92 DYLLFDTPGQIELFT-HSDSGRKIVERLQK--NGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL--ELPHVNVLSKI  166 (238)
T ss_dssp             SEEEEE--SSHHHHH-HSHHHHHHHHTSSS------EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH--TSEEEEEE--G
T ss_pred             cEEEEeCCCCEEEEE-echhHHHHHHHHhh--hcceEEEEEEecccccChhhHHHHHHHHHHHHhhC--CCCEEEeeecc
Confidence            599999999432100 00112222222222  344578999998722222221  111111111211  23999999999


Q ss_pred             CCCC
Q 024985          148 NELE  151 (259)
Q Consensus       148 D~~~  151 (259)
                      |+..
T Consensus       167 Dl~~  170 (238)
T PF03029_consen  167 DLLS  170 (238)
T ss_dssp             GGS-
T ss_pred             Cccc
Confidence            9987

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.81  E-value=7.2e-09  Score=85.32  Aligned_cols=59  Identities=25%  Similarity=0.281  Sum_probs=40.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCC------CCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAG------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~   83 (259)
                      ..++++|++|||||||+|+|++.....++.-      ...+|+....+..   .+  -.++||||+....
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~~--~~liDtPG~~~~~  185 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---HG--GLIADTPGFNEFG  185 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---CC--cEEEeCCCccccC
Confidence            5889999999999999999998765433211      1225555555432   22  3799999987543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=1.4e-08  Score=74.36  Aligned_cols=162  Identities=14%  Similarity=0.091  Sum_probs=95.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ..-+|+++|--|+||+|++-.+--.++....     .|.......+. +++.++.+||.-|-..           +....
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvttk-----Ptigfnve~v~-yKNLk~~vwdLggqtS-----------irPyW   79 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTTK-----PTIGFNVETVP-YKNLKFQVWDLGGQTS-----------IRPYW   79 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccccC-----CCCCcCccccc-cccccceeeEccCccc-----------ccHHH
Confidence            5579999999999999987666433321111     11112222223 4677899999988543           22222


Q ss_pred             hhcCCCccEEEEEEeCC--CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           98 GMAKDGIHAVLLVFSVR--NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ..++...|++|||+|..  ++++....++...|.+--=.  ...++|+.||.|-...  ....+....   -.+.++...
T Consensus        80 RcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq--~a~llv~anKqD~~~~--~t~~E~~~~---L~l~~Lk~r  152 (182)
T KOG0072|consen   80 RCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQ--HAKLLVFANKQDYSGA--LTRSEVLKM---LGLQKLKDR  152 (182)
T ss_pred             HHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhc--CceEEEEeccccchhh--hhHHHHHHH---hChHHHhhh
Confidence            33566779999999987  34554445555555432111  1378899999997654  333332210   112222222


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                         .+-.|.+++..+    .|+.+.++++..-+++
T Consensus       153 ---~~~Iv~tSA~kg----~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  153 ---IWQIVKTSAVKG----EGLDPAMDWLQRPLKS  180 (182)
T ss_pred             ---eeEEEeeccccc----cCCcHHHHHHHHHHhc
Confidence               244566666544    8999999998877664

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.78  E-value=3.7e-07  Score=76.27  Aligned_cols=76  Identities=20%  Similarity=0.221  Sum_probs=45.4

Q ss_pred             CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh----cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEE
Q 024985           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM----AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIV  142 (259)
Q Consensus        67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~iv  142 (259)
                      .+..++||||||....   +.....++......    ....+|.+++|+|++.  ...+......+.+..+     ..-+
T Consensus       153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~~-----~~g~  222 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAVG-----LTGI  222 (272)
T ss_pred             CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhCC-----CCEE
Confidence            3468999999997642   33334444443322    1235789999999973  2333333333333233     5678


Q ss_pred             EEeCCCCCCC
Q 024985          143 VFTGGNELED  152 (259)
Q Consensus       143 V~nk~D~~~~  152 (259)
                      |+||.|....
T Consensus       223 IlTKlDe~~~  232 (272)
T TIGR00064       223 ILTKLDGTAK  232 (272)
T ss_pred             EEEccCCCCC
Confidence            9999998654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd01859 MJ1464 MJ1464

Probab=98.77  E-value=2.6e-08  Score=76.35  Aligned_cols=57  Identities=32%  Similarity=0.425  Sum_probs=39.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~   79 (259)
                      ...+++++|.+|+||||++|++.+....... ...+.|......    ..+..+.+|||||+
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~-~~~~~t~~~~~~----~~~~~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSASTS-PSPGYTKGEQLV----KITSKIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeeeeeEEE----EcCCCEEEEECcCC
Confidence            4578999999999999999999986643322 233445443322    12346899999995

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.76  E-value=1.1e-06  Score=74.89  Aligned_cols=147  Identities=16%  Similarity=0.134  Sum_probs=77.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCC------cccccCCCCC-----------cceeeEEEEEE---------------
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRR------AFKSKAGSSG-----------VTKTCEMQRTM---------------   64 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~------~~~~~~~~~~-----------~T~~~~~~~~~---------------   64 (259)
                      ..+..|+++|++|+||||++..|.+.-      +......+..           .-....+....               
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~  191 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA  191 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence            345789999999999999998875421      1111111100           00001111100               


Q ss_pred             -eeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh----cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe
Q 024985           65 -LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM----AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY  139 (259)
Q Consensus        65 -~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~  139 (259)
                       ...+..++||||||.....   .....++......    ....++..++|+|++.+..  .........+..+     +
T Consensus       192 ~~~~~~D~ViIDTaGr~~~~---~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~a~~f~~~~~-----~  261 (318)
T PRK10416        192 AKARGIDVLIIDTAGRLHNK---TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQAKAFHEAVG-----L  261 (318)
T ss_pred             HHhCCCCEEEEeCCCCCcCC---HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHHHHHHHhhCC-----C
Confidence             0234579999999976432   2233344433321    1235688899999984322  2112222222222     6


Q ss_pred             EEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985          140 MIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       140 ~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                      .-+|+||.|....             -..+-.+....+-++.++...
T Consensus       262 ~giIlTKlD~t~~-------------~G~~l~~~~~~~~Pi~~v~~G  295 (318)
T PRK10416        262 TGIILTKLDGTAK-------------GGVVFAIADELGIPIKFIGVG  295 (318)
T ss_pred             CEEEEECCCCCCC-------------ccHHHHHHHHHCCCEEEEeCC
Confidence            6799999996533             112334445556666666654

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=8.7e-08  Score=86.15  Aligned_cols=119  Identities=19%  Similarity=0.187  Sum_probs=77.8

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC---------------CCCcceeeEEEEEE--e--eCCcEEEEEeC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG---------------SSGVTKTCEMQRTM--L--KDGQVVNVIDT   76 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~---------------~~~~T~~~~~~~~~--~--~~~~~~~liDT   76 (259)
                      .....+|+++|.-++|||+|+..|.....+.....               ..+++.+..-....  .  ....-++++||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            34568999999999999999999987654221100               01222222111111  1  12236899999


Q ss_pred             CCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985           77 PGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL  150 (259)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~  150 (259)
                      ||.-+.       ..+....+    ..+|++++|+|+..+..-....+++...+.     ..|+++|+||+|.+
T Consensus       205 PGHVnF-------~DE~ta~l----~~sDgvVlvvDv~EGVmlntEr~ikhaiq~-----~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  205 PGHVNF-------SDETTASL----RLSDGVVLVVDVAEGVMLNTERIIKHAIQN-----RLPIVVVINKVDRL  262 (971)
T ss_pred             CCcccc-------hHHHHHHh----hhcceEEEEEEcccCceeeHHHHHHHHHhc-----cCcEEEEEehhHHH
Confidence            997643       22443333    345999999999888888877777765442     13999999999986

>PRK00098 GTPase RsgA; Reviewed

Probab=98.75  E-value=4.7e-08  Score=82.87  Aligned_cols=59  Identities=29%  Similarity=0.299  Sum_probs=39.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC------CCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS------SGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~------~~~T~~~~~~~~~~~~~~~~~liDTPG~~~   81 (259)
                      ...++|+|++|||||||+|+|++......+.-.      ..+|+........    ....++||||+..
T Consensus       164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~----~~~~~~DtpG~~~  228 (298)
T PRK00098        164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP----GGGLLIDTPGFSS  228 (298)
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC----CCcEEEECCCcCc
Confidence            457999999999999999999987654332111      1244444433221    1247999999874

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=1e-07  Score=79.61  Aligned_cols=176  Identities=15%  Similarity=0.201  Sum_probs=114.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCC------Cccc--------ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGR------RAFK--------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~------~~~~--------~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~   81 (259)
                      .++..+|.-+|....|||||..+|+..      ..+.        +.....+.|.......+. ...+.+.=+|+||.-|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYe-Ta~RhYaH~DCPGHAD  129 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYE-TAKRHYAHTDCPGHAD  129 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeee-ccccccccCCCCchHH
Confidence            456689999999999999999998631      1100        011123555544444444 3456888999999532


Q ss_pred             CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh
Q 024985           82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~  161 (259)
                                 +.+-+.....+-|+.|+|+.++++..++.++-|-+.++ .|.   ++++|.+||.|.+++  .++.+++
T Consensus       130 -----------YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQ-VGV---~~ivvfiNKvD~V~d--~e~leLV  192 (449)
T KOG0460|consen  130 -----------YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQ-VGV---KHIVVFINKVDLVDD--PEMLELV  192 (449)
T ss_pred             -----------HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHH-cCC---ceEEEEEecccccCC--HHHHHHH
Confidence                       22222334456699999999998888888777765555 454   488899999999977  5666655


Q ss_pred             CCCCCchHHHHHHHcCC---cEEEEeCCC------cccccchhHHHHHHHHHHHHHHHhCC
Q 024985          162 GPECPKPLKEILQLCEN---RRVLFDNKT------KDAATRTEQVGKLISLVNSVILENGG  213 (259)
Q Consensus       162 ~~~~~~~l~~~~~~~~~---~~~~~~~~~------~~~~~~~~~i~eLl~~i~~~~~~~~~  213 (259)
                      +-    .+++++...+.   ...++..++      ..+.-..+.|.+|++.+.++++...+
T Consensus       193 Em----E~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R  249 (449)
T KOG0460|consen  193 EM----EIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER  249 (449)
T ss_pred             HH----HHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc
Confidence            43    67888887763   112222211      11112346789999999998765533

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.74  E-value=7.1e-08  Score=77.52  Aligned_cols=26  Identities=15%  Similarity=0.299  Sum_probs=23.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +..+.|+|+|+.|+|||||++.++..
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~   45 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDN   45 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999999998754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=1.6e-07  Score=70.60  Aligned_cols=116  Identities=12%  Similarity=0.071  Sum_probs=71.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ..-+++++|--|+|||||++.|-..........-.+++....      ..+..+..+|.-|..           +.....
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~------Ig~m~ftt~DLGGH~-----------qArr~w   81 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELS------IGGMTFTTFDLGGHL-----------QARRVW   81 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHhe------ecCceEEEEccccHH-----------HHHHHH
Confidence            446899999999999999999976664222111122222222      467789999999932           333334


Q ss_pred             hhcCCCccEEEEEEeCCC--CCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           98 GMAKDGIHAVLLVFSVRN--RFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ..+.+.+|+++|.+|+-+  ++.+. +.-++.+...- .-.+.|++|..||+|....
T Consensus        82 kdyf~~v~~iv~lvda~d~er~~es-~~eld~ll~~e-~la~vp~lilgnKId~p~a  136 (193)
T KOG0077|consen   82 KDYFPQVDAIVYLVDAYDQERFAES-KKELDALLSDE-SLATVPFLILGNKIDIPYA  136 (193)
T ss_pred             HHHHhhhceeEeeeehhhHHHhHHH-HHHHHHHHhHH-HHhcCcceeecccccCCCc
Confidence            455667799999999862  23222 22222221110 0023499999999997755

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.73  E-value=3.4e-08  Score=82.44  Aligned_cols=90  Identities=21%  Similarity=0.218  Sum_probs=68.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC-------------C---cEEEEEeCCCCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD-------------G---QVVNVIDTPGLFD   81 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~-------------~---~~~~liDTPG~~~   81 (259)
                      ..++|.+||.+|+|||||+|+|++....  ....+.+|.++....+...+             +   -.+.+.|++|+-.
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~--~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAG--AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCC--ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            5689999999999999999999988863  34456777777666543221             1   1599999999988


Q ss_pred             CCCChHHHHHHHHHHHhhcCCCccEEEEEEeC
Q 024985           82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSV  113 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~  113 (259)
                      .....+.+...+.+.+..    +|+++.|+++
T Consensus        97 GAs~G~GLGN~FLs~iR~----vDaifhVVr~  124 (391)
T KOG1491|consen   97 GASAGEGLGNKFLSHIRH----VDAIFHVVRA  124 (391)
T ss_pred             CcccCcCchHHHHHhhhh----ccceeEEEEe
Confidence            777777788888777654    4888888875

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.73  E-value=1.1e-07  Score=77.24  Aligned_cols=104  Identities=21%  Similarity=0.262  Sum_probs=54.1

Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC--CCCCHhHHHHHHHHHHHhcccccCeEEEEEe
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR--NRFSEEGGAAIHSLESLFGKKVFDYMIVVFT  145 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~n  145 (259)
                      |..++||.|.|.+.+       .-++       ..-+|.+++|+.+.  +.+...-.-+++    +       .=++|+|
T Consensus       121 G~D~IiiETVGvGQs-------E~~I-------~~~aD~~v~v~~Pg~GD~iQ~~KaGimE----i-------aDi~vVN  175 (266)
T PF03308_consen  121 GFDVIIIETVGVGQS-------EVDI-------ADMADTVVLVLVPGLGDEIQAIKAGIME----I-------ADIFVVN  175 (266)
T ss_dssp             T-SEEEEEEESSSTH-------HHHH-------HTTSSEEEEEEESSTCCCCCTB-TTHHH----H--------SEEEEE
T ss_pred             CCCEEEEeCCCCCcc-------HHHH-------HHhcCeEEEEecCCCccHHHHHhhhhhh----h-------ccEEEEe
Confidence            556999999998742       1122       12349999988765  233322222222    1       3358899


Q ss_pred             CCCCCCCCcccHHhhhCCCCCchHHHHHHHc-----CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          146 GGNELEDNDETLEDYLGPECPKPLKEILQLC-----ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       146 k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      |+|.... .....+         ++..+...     .+++.++..++..+    +|+.+|.+.|.++...
T Consensus       176 KaD~~gA-~~~~~~---------l~~~l~l~~~~~~~W~ppV~~tsA~~~----~Gi~eL~~~i~~~~~~  231 (266)
T PF03308_consen  176 KADRPGA-DRTVRD---------LRSMLHLLREREDGWRPPVLKTSALEG----EGIDELWEAIDEHRDY  231 (266)
T ss_dssp             --SHHHH-HHHHHH---------HHHHHHHCSTSCTSB--EEEEEBTTTT----BSHHHHHHHHHHHHHH
T ss_pred             CCChHHH-HHHHHH---------HHHHHhhccccccCCCCCEEEEEeCCC----CCHHHHHHHHHHHHHH
Confidence            9994422 112221         22233221     23455665554433    7999999999886543

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.73  E-value=1.5e-07  Score=81.26  Aligned_cols=146  Identities=19%  Similarity=0.140  Sum_probs=79.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC------cccccCCCC---Ccc--------eeeEEEEEE----------ee---C
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR------AFKSKAGSS---GVT--------KTCEMQRTM----------LK---D   67 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~------~~~~~~~~~---~~T--------~~~~~~~~~----------~~---~   67 (259)
                      .+..|+|+|++||||||++..|...-      +......+.   ...        ..+......          ..   .
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~  319 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  319 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence            34789999999999999999986321      110011000   000        000111000          00   1


Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG  147 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~  147 (259)
                      +..++||||||...   .......++...+...  .+|.++||+|++... ..-...++.+.. ++     .-=+|+||.
T Consensus       320 ~~DvVLIDTaGRs~---kd~~lm~EL~~~lk~~--~PdevlLVLsATtk~-~d~~~i~~~F~~-~~-----idglI~TKL  387 (436)
T PRK11889        320 RVDYILIDTAGKNY---RASETVEEMIETMGQV--EPDYICLTLSASMKS-KDMIEIITNFKD-IH-----IDGIVFTKF  387 (436)
T ss_pred             CCCEEEEeCccccC---cCHHHHHHHHHHHhhc--CCCeEEEEECCccCh-HHHHHHHHHhcC-CC-----CCEEEEEcc
Confidence            34799999999753   2233344555554432  357788999886222 111334443333 22     456899999


Q ss_pred             CCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCc
Q 024985          148 NELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTK  188 (259)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  188 (259)
                      |....             --.+-.+...++.++.++.+...
T Consensus       388 DET~k-------------~G~iLni~~~~~lPIsyit~GQ~  415 (436)
T PRK11889        388 DETAS-------------SGELLKIPAVSSAPIVLMTDGQD  415 (436)
T ss_pred             cCCCC-------------ccHHHHHHHHHCcCEEEEeCCCC
Confidence            98754             22344555666777777776543

>PRK14974 cell division protein FtsY; Provisional

Probab=98.73  E-value=1.3e-07  Score=81.01  Aligned_cols=73  Identities=18%  Similarity=0.177  Sum_probs=43.5

Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG  147 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~  147 (259)
                      +..++||||||....   ......++......  ..+|.+++|+|+..+  .........+.+..+     .--+|+||.
T Consensus       222 ~~DvVLIDTaGr~~~---~~~lm~eL~~i~~~--~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~-----~~giIlTKl  289 (336)
T PRK14974        222 GIDVVLIDTAGRMHT---DANLMDELKKIVRV--TKPDLVIFVGDALAG--NDAVEQAREFNEAVG-----IDGVILTKV  289 (336)
T ss_pred             CCCEEEEECCCccCC---cHHHHHHHHHHHHh--hCCceEEEeeccccc--hhHHHHHHHHHhcCC-----CCEEEEeee
Confidence            456999999997642   23344455444322  246888999998632  222223333333233     566899999


Q ss_pred             CCCCC
Q 024985          148 NELED  152 (259)
Q Consensus       148 D~~~~  152 (259)
                      |....
T Consensus       290 D~~~~  294 (336)
T PRK14974        290 DADAK  294 (336)
T ss_pred             cCCCC
Confidence            98643

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.73  E-value=2.5e-08  Score=87.25  Aligned_cols=62  Identities=31%  Similarity=0.361  Sum_probs=49.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD   85 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~   85 (259)
                      ..+|.+||.|||||||+||+|.|.....+ .+++|.|+..+...+    ...+.+.|+||+-.+...
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~l----s~~v~LCDCPGLVfPSf~  375 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFL----SPSVCLCDCPGLVFPSFS  375 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEc----CCCceecCCCCccccCCC
Confidence            58999999999999999999999987333 346788887776533    246789999999765543

>PRK13796 GTPase YqeH; Provisional

Probab=98.72  E-value=2.1e-08  Score=87.25  Aligned_cols=59  Identities=25%  Similarity=0.239  Sum_probs=39.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC----cccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRR----AFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~----~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~   81 (259)
                      ..+++++|.+|||||||||+|++..    ........+++|........    +....++||||+..
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l----~~~~~l~DTPGi~~  222 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL----DDGSFLYDTPGIIH  222 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc----CCCcEEEECCCccc
Confidence            3579999999999999999998643    11112234566665544322    12357999999863

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.70  E-value=2.1e-07  Score=80.22  Aligned_cols=148  Identities=20%  Similarity=0.201  Sum_probs=81.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCC-cceeeEEEE----------------------------EEeeCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSG-VTKTCEMQR----------------------------TMLKDG   68 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~-~T~~~~~~~----------------------------~~~~~~   68 (259)
                      ++..|+||||+||||||.+-.|........+....+ .|++.-..+                            +....+
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~  281 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD  281 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence            378999999999999999988865543222211111 111111100                            001234


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGN  148 (259)
Q Consensus        69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D  148 (259)
                      ..++||||.|....   +.....++...+..+ .. .-+.+|++++...  .   -+..+.+.|+.  ...--+++||.|
T Consensus       282 ~d~ILVDTaGrs~~---D~~~i~el~~~~~~~-~~-i~~~Lvlsat~K~--~---dlkei~~~f~~--~~i~~~I~TKlD  349 (407)
T COG1419         282 CDVILVDTAGRSQY---DKEKIEELKELIDVS-HS-IEVYLVLSATTKY--E---DLKEIIKQFSL--FPIDGLIFTKLD  349 (407)
T ss_pred             CCEEEEeCCCCCcc---CHHHHHHHHHHHhcc-cc-ceEEEEEecCcch--H---HHHHHHHHhcc--CCcceeEEEccc
Confidence            57999999996532   233344555554433 22 3456788887332  1   22233332332  124457899999


Q ss_pred             CCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCccc
Q 024985          149 ELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDA  190 (259)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  190 (259)
                      ....-             -.+-.++....-++.++++....+
T Consensus       350 ET~s~-------------G~~~s~~~e~~~PV~YvT~GQ~VP  378 (407)
T COG1419         350 ETTSL-------------GNLFSLMYETRLPVSYVTNGQRVP  378 (407)
T ss_pred             ccCch-------------hHHHHHHHHhCCCeEEEeCCCCCC
Confidence            87542             234445555566777777764433

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.70  E-value=4.7e-07  Score=74.74  Aligned_cols=110  Identities=14%  Similarity=0.121  Sum_probs=61.5

Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHH-HHHHHhcccccCeEEEEEeC
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIH-SLESLFGKKVFDYMIVVFTG  146 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~-~l~~~~~~~~~~~~ivV~nk  146 (259)
                      |..++||.|.|.+.+..       .+..       -+|.+++|.-+..+-   +...++ =+.+ +      -=++|+||
T Consensus       143 G~DvIIVETVGvGQsev-------~I~~-------~aDt~~~v~~pg~GD---~~Q~iK~GimE-i------aDi~vINK  198 (323)
T COG1703         143 GYDVIIVETVGVGQSEV-------DIAN-------MADTFLVVMIPGAGD---DLQGIKAGIME-I------ADIIVINK  198 (323)
T ss_pred             CCCEEEEEecCCCcchh-------HHhh-------hcceEEEEecCCCCc---HHHHHHhhhhh-h------hheeeEec
Confidence            45699999999876422       2322       338888876543221   122222 1222 2      23589999


Q ss_pred             CCCCCCCcccHHhhhCCCCCchHHHH---HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          147 GNELEDNDETLEDYLGPECPKPLKEI---LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      .|.-.. .....++..     .++..   ....++++.++..++..+    +|+.+|.+.|.++....
T Consensus       199 aD~~~A-~~a~r~l~~-----al~~~~~~~~~~~W~ppv~~t~A~~g----~Gi~~L~~ai~~h~~~~  256 (323)
T COG1703         199 ADRKGA-EKAARELRS-----ALDLLREVWRENGWRPPVVTTSALEG----EGIDELWDAIEDHRKFL  256 (323)
T ss_pred             cChhhH-HHHHHHHHH-----HHHhhcccccccCCCCceeEeeeccC----CCHHHHHHHHHHHHHHH
Confidence            994322 122222221     12222   334456666777665544    79999999998876543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.70  E-value=7.4e-08  Score=81.24  Aligned_cols=58  Identities=33%  Similarity=0.338  Sum_probs=39.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCC------CCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGS------SGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~------~~~T~~~~~~~~~~~~~~~~~liDTPG~~~   81 (259)
                      ..++++|++|+|||||+|+|++......+...      ..+|+........  .  ...++||||+.+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~--~--~~~liDtPG~~~  225 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLP--G--GGLLIDTPGFRE  225 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcC--C--CCEEEECCCCCc
Confidence            68999999999999999999997754433211      1234444433221  1  237999999954

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.69  E-value=1.1e-06  Score=77.87  Aligned_cols=145  Identities=16%  Similarity=0.089  Sum_probs=76.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC------CCcccccCCCCCcc-----------eeeEEEEE--------------Ee
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILG------RRAFKSKAGSSGVT-----------KTCEMQRT--------------ML   65 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~------~~~~~~~~~~~~~T-----------~~~~~~~~--------------~~   65 (259)
                      ..+..|+++|.+|+||||++..|..      ..+......+...+           .....+..              ..
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~  172 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK  172 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence            3467899999999999999977742      11111111000000           00001100              00


Q ss_pred             eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEe
Q 024985           66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFT  145 (259)
Q Consensus        66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~n  145 (259)
                      .....++||||||....   ......++......  ..+|.+++|+|++.+  .   ..++.... |.... ...-+|+|
T Consensus       173 ~~~~DvVIIDTAGr~~~---d~~lm~El~~l~~~--~~pdevlLVvda~~g--q---~av~~a~~-F~~~l-~i~gvIlT  240 (437)
T PRK00771        173 FKKADVIIVDTAGRHAL---EEDLIEEMKEIKEA--VKPDEVLLVIDATIG--Q---QAKNQAKA-FHEAV-GIGGIIIT  240 (437)
T ss_pred             hhcCCEEEEECCCcccc---hHHHHHHHHHHHHH--hcccceeEEEecccc--H---HHHHHHHH-HHhcC-CCCEEEEe
Confidence            12237999999997632   33344444444322  246889999998743  1   23333333 33211 14568899


Q ss_pred             CCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985          146 GGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       146 k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                      |.|....-             -.+-.+....+.++.++...
T Consensus       241 KlD~~a~~-------------G~~ls~~~~~~~Pi~fig~G  268 (437)
T PRK00771        241 KLDGTAKG-------------GGALSAVAETGAPIKFIGTG  268 (437)
T ss_pred             cccCCCcc-------------cHHHHHHHHHCcCEEEEecC
Confidence            99976431             12333444556666666554

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=6.1e-08  Score=86.36  Aligned_cols=183  Identities=16%  Similarity=0.166  Sum_probs=112.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccccc----------------CCCCCcceeeEEEEEEeeCCcEEEEEeCCCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK----------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF   80 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~   80 (259)
                      +..++|.+.-...+||||+.+.++--......                ....+.|.......+.| .+.++++|||||..
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTPGHv  115 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTPGHV  115 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCCCce
Confidence            35689999999999999999987632211110                01124555444444554 47899999999988


Q ss_pred             CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhh
Q 024985           81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDY  160 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~  160 (259)
                      |...       ++.+.+.    -.|+.++|+++-.+...+.....+..++ ++.    |.+..+||+|.+..        
T Consensus       116 DFT~-------EVeRALr----VlDGaVlvl~aV~GVqsQt~tV~rQ~~r-y~v----P~i~FiNKmDRmGa--------  171 (721)
T KOG0465|consen  116 DFTF-------EVERALR----VLDGAVLVLDAVAGVESQTETVWRQMKR-YNV----PRICFINKMDRMGA--------  171 (721)
T ss_pred             eEEE-------Eehhhhh----hccCeEEEEEcccceehhhHHHHHHHHh-cCC----CeEEEEehhhhcCC--------
Confidence            7643       3333332    3388889998877888888778887776 443    99999999999977        


Q ss_pred             hCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH-hCCCCCCHHHHHHHHHhH
Q 024985          161 LGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE-NGGQPYSDEIFAELKKGA  228 (259)
Q Consensus       161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~-~~~~~~~~~~~~~~~~~~  228 (259)
                         +....+..+.........+.+-..... ....|+.+|++...-+... ++......++.++.++..
T Consensus       172 ---~~~~~l~~i~~kl~~~~a~vqiPig~e-~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~  236 (721)
T KOG0465|consen  172 ---SPFRTLNQIRTKLNHKPAVVQIPIGSE-SNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELA  236 (721)
T ss_pred             ---ChHHHHHHHHhhcCCchheeEcccccc-ccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHH
Confidence               334456666666665444444432221 1336677766643322222 222233455555555443

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=1.1e-07  Score=86.75  Aligned_cols=121  Identities=21%  Similarity=0.278  Sum_probs=79.3

Q ss_pred             CCCCCCceEEEEEcCCCCcHHHHHHHHhCCCccccc--------------CCCCCcceeeEEEEEEeeCCcEEEEEeCCC
Q 024985           13 TSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSK--------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPG   78 (259)
Q Consensus        13 ~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~--------------~~~~~~T~~~~~~~~~~~~~~~~~liDTPG   78 (259)
                      .+.+....+|.++.....|||||..+|+......+.              ....+.|-+...... ...+..+++||+||
T Consensus         3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~-~~~~~~~nlidspg   81 (887)
T KOG0467|consen    3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISL-LHKDYLINLIDSPG   81 (887)
T ss_pred             CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccc-ccCceEEEEecCCC
Confidence            344566789999999999999999999765532211              011123322221111 13567899999999


Q ss_pred             CCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985           79 LFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL  150 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~  150 (259)
                      .-|+..       ++.....    -+|..++++|+-.+.+.++..+++..   +...  ..+++|+||+|.+
T Consensus        82 hvdf~s-------evssas~----l~d~alvlvdvvegv~~qt~~vlrq~---~~~~--~~~~lvinkidrl  137 (887)
T KOG0467|consen   82 HVDFSS-------EVSSASR----LSDGALVLVDVVEGVCSQTYAVLRQA---WIEG--LKPILVINKIDRL  137 (887)
T ss_pred             ccchhh-------hhhhhhh----hcCCcEEEEeeccccchhHHHHHHHH---HHcc--CceEEEEehhhhH
Confidence            876432       4444333    34899999999889999888777732   2111  1788999999943

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.61  E-value=7e-07  Score=77.34  Aligned_cols=151  Identities=17%  Similarity=0.150  Sum_probs=78.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC-Cccee------------------eEEEEE----------EeeCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS-GVTKT------------------CEMQRT----------MLKDGQ   69 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~-~~T~~------------------~~~~~~----------~~~~~~   69 (259)
                      ...++|+|++|+||||++..|........+.... -.|.+                  ......          ....+.
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            4689999999999999999987542211000000 00000                  011101          012345


Q ss_pred             EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccc---cCeEEEEEeC
Q 024985           70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKV---FDYMIVVFTG  146 (259)
Q Consensus        70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~---~~~~ivV~nk  146 (259)
                      .+++|||||....   +..+.+.+.. +.. ...+.-.++|++++.+....+ +.+..+....+.+.   ....=+|+||
T Consensus       217 DlVLIDTaG~~~~---d~~l~e~La~-L~~-~~~~~~~lLVLsAts~~~~l~-evi~~f~~~~~~p~~~~~~~~~~I~TK  290 (374)
T PRK14722        217 HMVLIDTIGMSQR---DRTVSDQIAM-LHG-ADTPVQRLLLLNATSHGDTLN-EVVQAYRSAAGQPKAALPDLAGCILTK  290 (374)
T ss_pred             CEEEEcCCCCCcc---cHHHHHHHHH-Hhc-cCCCCeEEEEecCccChHHHH-HHHHHHHHhhcccccccCCCCEEEEec
Confidence            7999999997632   1223333322 221 223445688999874433322 33444444332211   0134588899


Q ss_pred             CCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCc
Q 024985          147 GNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTK  188 (259)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  188 (259)
                      .|....-             -.+-.++...+-++.++.+...
T Consensus       291 lDEt~~~-------------G~~l~~~~~~~lPi~yvt~Gq~  319 (374)
T PRK14722        291 LDEASNL-------------GGVLDTVIRYKLPVHYVSTGQK  319 (374)
T ss_pred             cccCCCc-------------cHHHHHHHHHCcCeEEEecCCC
Confidence            9987542             1333444455667777776543

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=3.5e-07  Score=88.70  Aligned_cols=128  Identities=17%  Similarity=0.281  Sum_probs=76.3

Q ss_pred             EEEcCCCCcHHHHHHHH-hCCCccc----ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh----HHHHHHH
Q 024985           23 VLVGRTGNGKSATGNSI-LGRRAFK----SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS----EFVSKEI   93 (259)
Q Consensus        23 ~l~G~~g~GKSslin~l-~~~~~~~----~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~----~~~~~~~   93 (259)
                      +++|++|+||||++..- .......    .+....+ |..|.     +.-+..-++|||.|-+-...+.    ...+..+
T Consensus       129 ~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cd-----wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~f  202 (1188)
T COG3523         129 MVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCD-----WWFTDEAVLIDTAGRYITQDSADEVDRAEWLGF  202 (1188)
T ss_pred             EEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccC-----cccccceEEEcCCcceecccCcchhhHHHHHHH
Confidence            56799999999988543 2111100    1111112 45444     3445567899999987544322    2234444


Q ss_pred             HHHHhh--cCCCccEEEEEEeCCCC--CCHhHH--------HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh
Q 024985           94 VKCIGM--AKDGIHAVLLVFSVRNR--FSEEGG--------AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL  161 (259)
Q Consensus        94 ~~~~~~--~~~~~~~il~v~d~~~~--~~~~~~--------~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~  161 (259)
                      ...++.  .....++||+.+++.+-  .+..+.        .-|..|.+.++...  |++|++||.|++..    +++|.
T Consensus       203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~--PVYl~lTk~Dll~G----F~efF  276 (1188)
T COG3523         203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARL--PVYLVLTKADLLPG----FEEFF  276 (1188)
T ss_pred             HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCC--ceEEEEeccccccc----HHHHH
Confidence            444443  34578999999998622  222222        12455566666655  99999999999954    66666


Q ss_pred             C
Q 024985          162 G  162 (259)
Q Consensus       162 ~  162 (259)
                      .
T Consensus       277 ~  277 (1188)
T COG3523         277 G  277 (1188)
T ss_pred             h
Confidence            5

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.60  E-value=3.8e-07  Score=80.12  Aligned_cols=145  Identities=15%  Similarity=0.150  Sum_probs=76.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCC-cceee-------------EEEEE---------------EeeCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSG-VTKTC-------------EMQRT---------------MLKDG   68 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~-~T~~~-------------~~~~~---------------~~~~~   68 (259)
                      ...+|+|+|++|+||||++..|.+......+....+ .+.+.             ....+               ....+
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~  269 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG  269 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence            457899999999999999998876421110000000 00000             00000               01234


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGN  148 (259)
Q Consensus        69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D  148 (259)
                      ..+++|||+|....   ......++... .. ....+-.++|++++...  .+   +..+...|..  ....=+|+||.|
T Consensus       270 ~d~VLIDTaGrsqr---d~~~~~~l~~l-~~-~~~~~~~~LVl~at~~~--~~---~~~~~~~f~~--~~~~~~I~TKlD  337 (420)
T PRK14721        270 KHMVLIDTVGMSQR---DQMLAEQIAML-SQ-CGTQVKHLLLLNATSSG--DT---LDEVISAYQG--HGIHGCIITKVD  337 (420)
T ss_pred             CCEEEecCCCCCcc---hHHHHHHHHHH-hc-cCCCceEEEEEcCCCCH--HH---HHHHHHHhcC--CCCCEEEEEeee
Confidence            46899999997632   22233344332 21 22345678999987332  11   2222222321  125568899999


Q ss_pred             CCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCC
Q 024985          149 ELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKT  187 (259)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  187 (259)
                      ....-             -.+-.++...+-++.++.+..
T Consensus       338 Et~~~-------------G~~l~~~~~~~lPi~yvt~Gq  363 (420)
T PRK14721        338 EAASL-------------GIALDAVIRRKLVLHYVTNGQ  363 (420)
T ss_pred             CCCCc-------------cHHHHHHHHhCCCEEEEECCC
Confidence            87541             233344555566777777753

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.60  E-value=1.9e-06  Score=77.32  Aligned_cols=175  Identities=15%  Similarity=0.151  Sum_probs=85.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC--------cccccCCCCCc-----------ceeeEEEEEE----------eeCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR--------AFKSKAGSSGV-----------TKTCEMQRTM----------LKDG   68 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~--------~~~~~~~~~~~-----------T~~~~~~~~~----------~~~~   68 (259)
                      ....|+|+|++|+||||++..|...-        +..........           ...+.+....          ...+
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~  428 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD  428 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence            35789999999999999998886421        11011000000           0000111100          0124


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGN  148 (259)
Q Consensus        69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D  148 (259)
                      ..++||||||....   ......++.. +.... . ...++|++.+...... ..+++.+.. .     .+.-+|+||+|
T Consensus       429 ~DLVLIDTaG~s~~---D~~l~eeL~~-L~aa~-~-~a~lLVLpAtss~~Dl-~eii~~f~~-~-----~~~gvILTKlD  495 (559)
T PRK12727        429 YKLVLIDTAGMGQR---DRALAAQLNW-LRAAR-Q-VTSLLVLPANAHFSDL-DEVVRRFAH-A-----KPQGVVLTKLD  495 (559)
T ss_pred             CCEEEecCCCcchh---hHHHHHHHHH-HHHhh-c-CCcEEEEECCCChhHH-HHHHHHHHh-h-----CCeEEEEecCc
Confidence            57999999997632   1122222221 21111 1 3457888876332222 233443333 1     26779999999


Q ss_pred             CCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCccc-ccchhHHHHHHHHHHHHHHHhCCCCCCHH
Q 024985          149 ELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDA-ATRTEQVGKLISLVNSVILENGGQPYSDE  219 (259)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~eLl~~i~~~~~~~~~~~~~~~  219 (259)
                      ....-             ..+-.++...+-.+.++.+....+ .-..-.-..|...+..+ ....+.+++.+
T Consensus       496 Et~~l-------------G~aLsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~l-~~~~~~~~~~~  553 (559)
T PRK12727        496 ETGRF-------------GSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLEDL-RRAADKPCTPE  553 (559)
T ss_pred             Cccch-------------hHHHHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHHHH-HhhccCCCChh
Confidence            76431             123334445566677777654322 11112334455555553 33344455443

>PRK10867 signal recognition particle protein; Provisional

Probab=98.59  E-value=3.4e-06  Score=74.64  Aligned_cols=94  Identities=15%  Similarity=0.147  Sum_probs=50.6

Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG  147 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~  147 (259)
                      +..++||||||....   +.....++.......  .++.+++|+|+..+  .......+.+.+..+     ..-+|+||.
T Consensus       183 ~~DvVIIDTaGrl~~---d~~lm~eL~~i~~~v--~p~evllVlda~~g--q~av~~a~~F~~~~~-----i~giIlTKl  250 (433)
T PRK10867        183 GYDVVIVDTAGRLHI---DEELMDELKAIKAAV--NPDEILLVVDAMTG--QDAVNTAKAFNEALG-----LTGVILTKL  250 (433)
T ss_pred             CCCEEEEeCCCCccc---CHHHHHHHHHHHHhh--CCCeEEEEEecccH--HHHHHHHHHHHhhCC-----CCEEEEeCc
Confidence            346999999996532   233344443332222  45778999997521  222233333333222     456888999


Q ss_pred             CCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985          148 NELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                      |....             .-.+-.+....+.++.++...
T Consensus       251 D~~~r-------------gG~alsi~~~~~~PI~fig~G  276 (433)
T PRK10867        251 DGDAR-------------GGAALSIRAVTGKPIKFIGTG  276 (433)
T ss_pred             cCccc-------------ccHHHHHHHHHCcCEEEEeCC
Confidence            96533             112334455556555555543

>cd00066 G-alpha G protein alpha subunit

Probab=98.59  E-value=1.5e-06  Score=74.36  Aligned_cols=75  Identities=11%  Similarity=0.207  Sum_probs=46.4

Q ss_pred             eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC--------CCHhHHHHHHHHHHHhccc--
Q 024985           66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR--------FSEEGGAAIHSLESLFGKK--  135 (259)
Q Consensus        66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~--------~~~~~~~~l~~l~~~~~~~--  135 (259)
                      .++..+.+||++|-..-       ...+.    .+..++++++||+|.++-        ....-.+.+..+..++..+  
T Consensus       158 ~~~~~~~~~DvgGq~~~-------R~kW~----~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~  226 (317)
T cd00066         158 IKNLKFRMFDVGGQRSE-------RKKWI----HCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF  226 (317)
T ss_pred             ecceEEEEECCCCCccc-------chhHH----HHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence            34567999999995321       11222    245578999999998721        0122234445555544433  


Q ss_pred             ccCeEEEEEeCCCCCC
Q 024985          136 VFDYMIVVFTGGNELE  151 (259)
Q Consensus       136 ~~~~~ivV~nk~D~~~  151 (259)
                      ...|+++++||.|...
T Consensus       227 ~~~pill~~NK~D~f~  242 (317)
T cd00066         227 ANTSIILFLNKKDLFE  242 (317)
T ss_pred             cCCCEEEEccChHHHH
Confidence            2359999999999774

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.56  E-value=1.9e-06  Score=75.33  Aligned_cols=147  Identities=16%  Similarity=0.170  Sum_probs=76.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccc-------ccCCCC-Cc----------ceeeEEEEE-------E--eeCCcEE
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFK-------SKAGSS-GV----------TKTCEMQRT-------M--LKDGQVV   71 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~-------~~~~~~-~~----------T~~~~~~~~-------~--~~~~~~~   71 (259)
                      ...|+++|++||||||++..|.......       ....+. ..          .........       .  ...+..+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            4579999999999999998886422110       000000 00          000000100       0  0124578


Q ss_pred             EEEeCCCCCCCCCChHHHHHHHHHHHhhcC-CCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985           72 NVIDTPGLFDSSADSEFVSKEIVKCIGMAK-DGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL  150 (259)
Q Consensus        72 ~liDTPG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~  150 (259)
                      +||||||+....   .....++...+.... ...+-.++|+|++.+.. .-...++.... ++     +-=+|+||.|..
T Consensus       303 VLIDTaGr~~rd---~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~~-~~-----~~glIlTKLDEt  372 (432)
T PRK12724        303 ILIDTAGYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYES-LN-----YRRILLTKLDEA  372 (432)
T ss_pred             EEEeCCCCCccC---HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhcC-CC-----CCEEEEEcccCC
Confidence            999999976422   223334444433221 22456789999873321 11222332211 22     556899999987


Q ss_pred             CCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCc
Q 024985          151 EDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTK  188 (259)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  188 (259)
                      ..-             -.+-.+....+-++.++.....
T Consensus       373 ~~~-------------G~il~i~~~~~lPI~ylt~GQ~  397 (432)
T PRK12724        373 DFL-------------GSFLELADTYSKSFTYLSVGQE  397 (432)
T ss_pred             CCc-------------cHHHHHHHHHCCCEEEEecCCC
Confidence            441             1233445555667777776543

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.55  E-value=1.3e-06  Score=81.55  Aligned_cols=147  Identities=20%  Similarity=0.189  Sum_probs=78.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC-Ccceee------------------EEEEE----------EeeCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS-GVTKTC------------------EMQRT----------MLKDGQ   69 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~-~~T~~~------------------~~~~~----------~~~~~~   69 (259)
                      ...|+|+|++||||||++..|.+......+.... -.+.+.                  .....          ....+.
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~  264 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK  264 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence            4689999999999999999988654211110000 000000                  00000          012344


Q ss_pred             EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985           70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGN  148 (259)
Q Consensus        70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D  148 (259)
                      .++||||||....   +....+++.....  ...++-+++|+|++..  ..+ .++++.+....+.   .+.=+|+||.|
T Consensus       265 D~VLIDTAGRs~~---d~~l~eel~~l~~--~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~---~i~glIlTKLD  334 (767)
T PRK14723        265 HLVLIDTVGMSQR---DRNVSEQIAMLCG--VGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGE---DVDGCIITKLD  334 (767)
T ss_pred             CEEEEeCCCCCcc---CHHHHHHHHHHhc--cCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccC---CCCEEEEeccC
Confidence            7999999996542   2223444433221  2345677899998732  222 1233333321111   14458899999


Q ss_pred             CCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCc
Q 024985          149 ELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTK  188 (259)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  188 (259)
                      ....             --.+-.+....+-++.++.+...
T Consensus       335 Et~~-------------~G~iL~i~~~~~lPI~yit~GQ~  361 (767)
T PRK14723        335 EATH-------------LGPALDTVIRHRLPVHYVSTGQK  361 (767)
T ss_pred             CCCC-------------ccHHHHHHHHHCCCeEEEecCCC
Confidence            8754             12334455555667777776543

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.55  E-value=8.3e-07  Score=76.50  Aligned_cols=145  Identities=17%  Similarity=0.094  Sum_probs=77.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC------CcccccCCCC--Cc-c--------eeeEEEEEEe-------------eC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR------RAFKSKAGSS--GV-T--------KTCEMQRTML-------------KD   67 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~------~~~~~~~~~~--~~-T--------~~~~~~~~~~-------------~~   67 (259)
                      +...|+++|++|+||||++..|...      .+......+.  +. .        ..+.+.....             ..
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~  284 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN  284 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence            4678999999999999999887531      1111111110  00 0        0011110000             02


Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG  147 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~  147 (259)
                      +..++||||||...   .......++.......  .+|.+++|++++  ....+  ..+.+.. |..  ...--+|+||.
T Consensus       285 ~~D~VLIDTAGr~~---~d~~~l~EL~~l~~~~--~p~~~~LVLsag--~~~~d--~~~i~~~-f~~--l~i~glI~TKL  352 (407)
T PRK12726        285 CVDHILIDTVGRNY---LAEESVSEISAYTDVV--HPDLTCFTFSSG--MKSAD--VMTILPK-LAE--IPIDGFIITKM  352 (407)
T ss_pred             CCCEEEEECCCCCc---cCHHHHHHHHHHhhcc--CCceEEEECCCc--ccHHH--HHHHHHh-cCc--CCCCEEEEEcc
Confidence            45899999999753   2233344444443322  456777888764  22222  3333333 221  12556889999


Q ss_pred             CCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCC
Q 024985          148 NELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKT  187 (259)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  187 (259)
                      |....             --.+-.+....+-++.++....
T Consensus       353 DET~~-------------~G~~Lsv~~~tglPIsylt~GQ  379 (407)
T PRK12726        353 DETTR-------------IGDLYTVMQETNLPVLYMTDGQ  379 (407)
T ss_pred             cCCCC-------------ccHHHHHHHHHCCCEEEEecCC
Confidence            98744             1233445556677777777754

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.51  E-value=6.7e-07  Score=79.26  Aligned_cols=145  Identities=19%  Similarity=0.148  Sum_probs=74.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc--------ccccCCCCC------cc-----eeeEEEEE----------EeeCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA--------FKSKAGSSG------VT-----KTCEMQRT----------MLKDGQ   69 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~--------~~~~~~~~~------~T-----~~~~~~~~----------~~~~~~   69 (259)
                      ...|+|+|++||||||++..|.....        ......+..      ..     ..+.....          ....+.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~  300 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC  300 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence            45899999999999999877653221        100111100      00     00000000          001245


Q ss_pred             EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 024985           70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNE  149 (259)
Q Consensus        70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~  149 (259)
                      .++||||||....   .......+...+... ...+-+++|++++... ..-..+++.+.. ++     +.-+|+||+|.
T Consensus       301 DlVlIDt~G~~~~---d~~~~~~L~~ll~~~-~~~~~~~LVl~a~~~~-~~l~~~~~~f~~-~~-----~~~vI~TKlDe  369 (424)
T PRK05703        301 DVILIDTAGRSQR---DKRLIEELKALIEFS-GEPIDVYLVLSATTKY-EDLKDIYKHFSR-LP-----LDGLIFTKLDE  369 (424)
T ss_pred             CEEEEeCCCCCCC---CHHHHHHHHHHHhcc-CCCCeEEEEEECCCCH-HHHHHHHHHhCC-CC-----CCEEEEecccc
Confidence            7999999997532   222233444444422 1234667888876221 111222232221 11     33588999998


Q ss_pred             CCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCC
Q 024985          150 LEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKT  187 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  187 (259)
                      ...             -..+-.++...+.++.++.+..
T Consensus       370 t~~-------------~G~i~~~~~~~~lPv~yit~Gq  394 (424)
T PRK05703        370 TSS-------------LGSILSLLIESGLPISYLTNGQ  394 (424)
T ss_pred             ccc-------------ccHHHHHHHHHCCCEEEEeCCC
Confidence            644             1134455666677777777753

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.51  E-value=1.4e-07  Score=80.76  Aligned_cols=140  Identities=16%  Similarity=0.214  Sum_probs=91.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccc----------------ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFK----------------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS   82 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~----------------~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~   82 (259)
                      .++|.++....+||||....|+=-..+.                ......|.|.......+. +.|.++++|||||.-+.
T Consensus        37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fd-wkg~rinlidtpghvdf  115 (753)
T KOG0464|consen   37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFD-WKGHRINLIDTPGHVDF  115 (753)
T ss_pred             hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecc-cccceEeeecCCCcceE
Confidence            4789999999999999998875211100                001112555555555555 57899999999998876


Q ss_pred             CCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC
Q 024985           83 SADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG  162 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~  162 (259)
                      ..       ++.+++...    |+++.|+|++.+...+...+++.-.+ +.    -|.+..+||+|.+..          
T Consensus       116 ~l-------everclrvl----dgavav~dasagve~qtltvwrqadk-~~----ip~~~finkmdk~~a----------  169 (753)
T KOG0464|consen  116 RL-------EVERCLRVL----DGAVAVFDASAGVEAQTLTVWRQADK-FK----IPAHCFINKMDKLAA----------  169 (753)
T ss_pred             EE-------EHHHHHHHh----cCeEEEEeccCCcccceeeeehhccc-cC----Cchhhhhhhhhhhhh----------
Confidence            54       444444433    89999999998887776555554433 22    388888999998854          


Q ss_pred             CCCCchHHHHHHHcCCcEEEEeCC
Q 024985          163 PECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       163 ~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                       ++......+.++.+.+...+.-.
T Consensus       170 -nfe~avdsi~ekl~ak~l~l~lp  192 (753)
T KOG0464|consen  170 -NFENAVDSIEEKLGAKALKLQLP  192 (753)
T ss_pred             -hhhhHHHHHHHHhCCceEEEEec
Confidence             22223445556666665555443

>smart00275 G_alpha G protein alpha subunit

Probab=98.51  E-value=3.2e-06  Score=73.01  Aligned_cols=75  Identities=12%  Similarity=0.160  Sum_probs=46.8

Q ss_pred             eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC--------CCHhHHHHHHHHHHHhccc--
Q 024985           66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR--------FSEEGGAAIHSLESLFGKK--  135 (259)
Q Consensus        66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~--------~~~~~~~~l~~l~~~~~~~--  135 (259)
                      .++..+.+||..|-..-       ...+    ..++.+++++|||+|.++-        ....-.+.+..+..++..+  
T Consensus       181 ~~~~~~~~~DvgGqr~~-------R~kW----~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~  249 (342)
T smart00275      181 VKKLFFRMFDVGGQRSE-------RKKW----IHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF  249 (342)
T ss_pred             ECCeEEEEEecCCchhh-------hhhH----HHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence            34567899999994311       1122    2245678999999998721        0112234455555555443  


Q ss_pred             ccCeEEEEEeCCCCCC
Q 024985          136 VFDYMIVVFTGGNELE  151 (259)
Q Consensus       136 ~~~~~ivV~nk~D~~~  151 (259)
                      ...|++|++||.|...
T Consensus       250 ~~~piil~~NK~D~~~  265 (342)
T smart00275      250 ANTSIILFLNKIDLFE  265 (342)
T ss_pred             cCCcEEEEEecHHhHH
Confidence            2359999999999874

Subunit of G proteins that contains the guanine nucleotide binding site

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.49  E-value=9.6e-07  Score=67.82  Aligned_cols=23  Identities=39%  Similarity=0.446  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +.++++|..|+|||||++.++..
T Consensus         1 p~~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           1 PVTVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhc
Confidence            35789999999999999998765

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR00101 ureG urease accessory protein UreG

Probab=98.48  E-value=1.2e-06  Score=69.79  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +.+|+++|++|+|||||++.+++.
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~   24 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRA   24 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            368999999999999999988764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR00959 ffh signal recognition particle protein

Probab=98.45  E-value=1.4e-05  Score=70.75  Aligned_cols=94  Identities=15%  Similarity=0.118  Sum_probs=51.7

Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG  147 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~  147 (259)
                      +..++||||||....   +.....++.....  ...++.++||+|+..+  .........+.+..+     ..=+|+||.
T Consensus       182 ~~DvVIIDTaGr~~~---d~~l~~eL~~i~~--~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~-----i~giIlTKl  249 (428)
T TIGR00959       182 GFDVVIVDTAGRLQI---DEELMEELAAIKE--ILNPDEILLVVDAMTG--QDAVNTAKTFNERLG-----LTGVVLTKL  249 (428)
T ss_pred             CCCEEEEeCCCcccc---CHHHHHHHHHHHH--hhCCceEEEEEeccch--HHHHHHHHHHHhhCC-----CCEEEEeCc
Confidence            346999999996531   2233444433332  1246788999998622  222333333333222     456889999


Q ss_pred             CCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985          148 NELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                      |....             .-.+-.+....+.++.++...
T Consensus       250 D~~~~-------------~G~~lsi~~~~~~PI~fi~~G  275 (428)
T TIGR00959       250 DGDAR-------------GGAALSVRSVTGKPIKFIGVG  275 (428)
T ss_pred             cCccc-------------ccHHHHHHHHHCcCEEEEeCC
Confidence            96532             112444555556565555543

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.41  E-value=4.9e-06  Score=72.68  Aligned_cols=145  Identities=16%  Similarity=0.138  Sum_probs=76.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC----------cccccCCCC--Cc--------c-eeeEEEEEE----------ee
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR----------AFKSKAGSS--GV--------T-KTCEMQRTM----------LK   66 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~----------~~~~~~~~~--~~--------T-~~~~~~~~~----------~~   66 (259)
                      .+..|+++|++|+||||++..|....          +......+.  +.        . ....+....          ..
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~  252 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence            35689999999999999998875321          111111000  00        0 000011000          12


Q ss_pred             CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeC
Q 024985           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTG  146 (259)
Q Consensus        67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk  146 (259)
                      .+..+++|||||....   +.....++...+....+ .+-+++|+|++.+.  .+  +.+.+... ..  ..+.=+|+||
T Consensus       253 ~~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~~-~~e~~LVlsat~~~--~~--~~~~~~~~-~~--~~~~~~I~TK  321 (388)
T PRK12723        253 KDFDLVLVDTIGKSPK---DFMKLAEMKELLNACGR-DAEFHLAVSSTTKT--SD--VKEIFHQF-SP--FSYKTVIFTK  321 (388)
T ss_pred             CCCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcCC-CCeEEEEEcCCCCH--HH--HHHHHHHh-cC--CCCCEEEEEe
Confidence            3457999999997642   22223445454443322 23578999998442  22  22333332 11  1155689999


Q ss_pred             CCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985          147 GNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                      .|....             --.+-.+....+-++.++...
T Consensus       322 lDet~~-------------~G~~l~~~~~~~~Pi~yit~G  348 (388)
T PRK12723        322 LDETTC-------------VGNLISLIYEMRKEVSYVTDG  348 (388)
T ss_pred             ccCCCc-------------chHHHHHHHHHCCCEEEEeCC
Confidence            998744             123334455556667677665

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.40  E-value=4.9e-06  Score=74.40  Aligned_cols=145  Identities=16%  Similarity=0.159  Sum_probs=73.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC-Ccceee-------------EEEEE---------------EeeCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS-GVTKTC-------------EMQRT---------------MLKDGQ   69 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~-~~T~~~-------------~~~~~---------------~~~~~~   69 (259)
                      ...++|+|++||||||++..|.+......+.... -.+.+.             ....+               ....+.
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~  335 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNK  335 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCC
Confidence            4689999999999999999987543211110000 000000             00000               001234


Q ss_pred             EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 024985           70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNE  149 (259)
Q Consensus        70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~  149 (259)
                      .+++|||+|....   ..... +....+..... ++-.++|+|++...  .  .+.+.+.. |...  ...-+|+||.|.
T Consensus       336 d~VLIDTaGr~~~---d~~~~-e~~~~l~~~~~-p~e~~LVLdAt~~~--~--~l~~i~~~-f~~~--~~~g~IlTKlDe  403 (484)
T PRK06995        336 HIVLIDTIGMSQR---DRMVS-EQIAMLHGAGA-PVKRLLLLNATSHG--D--TLNEVVQA-YRGP--GLAGCILTKLDE  403 (484)
T ss_pred             CeEEeCCCCcChh---hHHHH-HHHHHHhccCC-CCeeEEEEeCCCcH--H--HHHHHHHH-hccC--CCCEEEEeCCCC
Confidence            6899999996531   11112 22222222222 23368899987332  1  12222222 3221  245678999997


Q ss_pred             CCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCc
Q 024985          150 LEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTK  188 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  188 (259)
                      ...             -..+-.++...+.++.++.....
T Consensus       404 t~~-------------~G~~l~i~~~~~lPI~yvt~GQ~  429 (484)
T PRK06995        404 AAS-------------LGGALDVVIRYKLPLHYVSNGQR  429 (484)
T ss_pred             ccc-------------chHHHHHHHHHCCCeEEEecCCC
Confidence            643             22344455566777777777643

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.39  E-value=1.3e-06  Score=72.85  Aligned_cols=26  Identities=31%  Similarity=0.359  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      .+...|.|+|.+|||||||++.+++.
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~  127 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMR  127 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45689999999999999999888754

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=98.36  E-value=1.3e-06  Score=72.44  Aligned_cols=67  Identities=27%  Similarity=0.355  Sum_probs=46.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcc----cccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAF----KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA   84 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~----~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~   84 (259)
                      +..+.+.++|-||+|||||||++......    ......+|.|+.+... +.......+.++||||......
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp~vy~iDTPGil~P~I  211 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRPPVYLIDTPGILVPSI  211 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCCceEEecCCCcCCCCC
Confidence            45689999999999999999998543321    1112245677655542 3334566899999999986543

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.35  E-value=5.4e-06  Score=68.94  Aligned_cols=146  Identities=20%  Similarity=0.157  Sum_probs=78.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc------ccccCCCC-----------CcceeeEEEEEE-------------eeC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA------FKSKAGSS-----------GVTKTCEMQRTM-------------LKD   67 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~------~~~~~~~~-----------~~T~~~~~~~~~-------------~~~   67 (259)
                      +..+|+++|++|+||||++..|.+.-.      ......+.           ............             ...
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~  153 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  153 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence            447999999999999999988754311      00000000           000001111000             012


Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG  147 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~  147 (259)
                      +..++||||||....   ......++...+...  .++-+++|++++...  .  ...+.+.. |..  ..+--+|+||.
T Consensus       154 ~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~~~~--~--d~~~~~~~-f~~--~~~~~~I~TKl  221 (270)
T PRK06731        154 RVDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSASMKS--K--DMIEIITN-FKD--IHIDGIVFTKF  221 (270)
T ss_pred             CCCEEEEECCCCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCccCH--H--HHHHHHHH-hCC--CCCCEEEEEee
Confidence            458999999997532   233344454444322  446789999986221  1  22333333 322  22556899999


Q ss_pred             CCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCc
Q 024985          148 NELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTK  188 (259)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  188 (259)
                      |....             --.+-.+....+.++.++.+...
T Consensus       222 Det~~-------------~G~~l~~~~~~~~Pi~~it~Gq~  249 (270)
T PRK06731        222 DETAS-------------SGELLKIPAVSSAPIVLMTDGQD  249 (270)
T ss_pred             cCCCC-------------ccHHHHHHHHHCcCEEEEeCCCC
Confidence            98754             12333445556777777776543

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.33  E-value=2e-05  Score=68.41  Aligned_cols=125  Identities=16%  Similarity=0.185  Sum_probs=70.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhC------CCcccccCCC--C---------CcceeeEEEEEE--------------
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILG------RRAFKSKAGS--S---------GVTKTCEMQRTM--------------   64 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~------~~~~~~~~~~--~---------~~T~~~~~~~~~--------------   64 (259)
                      ..++..|+++|--|+||||..-.|..      ..+..+....  +         +....+.++...              
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~  176 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE  176 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence            34567999999999999999877642      1111111000  0         000111111110              


Q ss_pred             --eeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEE
Q 024985           65 --LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIV  142 (259)
Q Consensus        65 --~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~iv  142 (259)
                        ...+..++||||.|-..   ..+.+..++...-.  .-.+|-+|||+|+..+-  .-....+.+.+.++     -.=|
T Consensus       177 ~ak~~~~DvvIvDTAGRl~---ide~Lm~El~~Ik~--~~~P~E~llVvDam~GQ--dA~~~A~aF~e~l~-----itGv  244 (451)
T COG0541         177 KAKEEGYDVVIVDTAGRLH---IDEELMDELKEIKE--VINPDETLLVVDAMIGQ--DAVNTAKAFNEALG-----ITGV  244 (451)
T ss_pred             HHHHcCCCEEEEeCCCccc---ccHHHHHHHHHHHh--hcCCCeEEEEEecccch--HHHHHHHHHhhhcC-----CceE
Confidence              01234699999999663   34556666554432  23678999999987332  12334555555444     4458


Q ss_pred             EEeCCCCCCC
Q 024985          143 VFTGGNELED  152 (259)
Q Consensus       143 V~nk~D~~~~  152 (259)
                      |+||.|....
T Consensus       245 IlTKlDGdaR  254 (451)
T COG0541         245 ILTKLDGDAR  254 (451)
T ss_pred             EEEcccCCCc
Confidence            9999997643

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=2.7e-06  Score=65.47  Aligned_cols=118  Identities=19%  Similarity=0.138  Sum_probs=72.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe--eCC-cEEEEEeCCCCCCCCCChHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML--KDG-QVVNVIDTPGLFDSSADSEFVSKEI   93 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~--~~~-~~~~liDTPG~~~~~~~~~~~~~~~   93 (259)
                      ...++++++|..|.||+|+.++.+-.+.-....    .|.....+....  ..| .++..|||.|......         
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~----at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gg---------   74 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYP----ATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGG---------   74 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceeccc----CcceeEEeeeeeecccCcEEEEeeecccceeecc---------
Confidence            347899999999999999999987666422222    222233332221  223 5899999999542111         


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                        .-.-.+-+..+.++++|++.+++-.. ..+-+-+...++.   .|+++..||.|-...
T Consensus        75 --lrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~~r  129 (216)
T KOG0096|consen   75 --LRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIKAR  129 (216)
T ss_pred             --cccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceecccc
Confidence              00112223467789999987766543 3344445554442   499999999996544

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.27  E-value=2.5e-05  Score=66.73  Aligned_cols=76  Identities=21%  Similarity=0.293  Sum_probs=48.7

Q ss_pred             eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC--CCCCHhH------HHHHHHHHHHhccccc
Q 024985           66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR--NRFSEEG------GAAIHSLESLFGKKVF  137 (259)
Q Consensus        66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~--~~~~~~~------~~~l~~l~~~~~~~~~  137 (259)
                      ..+.++.++|++|-..          +-.++ ..+..++++||||++.+  +....+|      .+.++.+..++..+++
T Consensus       192 ~k~~~f~~~DvGGQRs----------eRrKW-ihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F  260 (354)
T KOG0082|consen  192 IKGLKFRMFDVGGQRS----------ERKKW-IHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF  260 (354)
T ss_pred             eCCCceEEEeCCCcHH----------HhhhH-HHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence            5677899999999321          11122 12678899999999976  1222222      3445555555554433


Q ss_pred             --CeEEEEEeCCCCCCC
Q 024985          138 --DYMIVVFTGGNELED  152 (259)
Q Consensus       138 --~~~ivV~nk~D~~~~  152 (259)
                        .++|+.+||.|+.+.
T Consensus       261 ~~tsiiLFLNK~DLFeE  277 (354)
T KOG0082|consen  261 ANTSIILFLNKKDLFEE  277 (354)
T ss_pred             ccCcEEEEeecHHHHHH
Confidence              489999999999854

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.26  E-value=1e-06  Score=71.14  Aligned_cols=122  Identities=16%  Similarity=0.224  Sum_probs=77.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      .-+|.++|.|++||||++..|+|..-   .+.....|+.....+...+.+-.+.+.|.||+.+...+...-.+++.    
T Consensus        59 ~a~vg~vgFPSvGksTl~~~l~g~~s---~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qvi----  131 (358)
T KOG1487|consen   59 DARVGFVGFPSVGKSTLLSKLTGTFS---EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVI----  131 (358)
T ss_pred             ceeeeEEecCccchhhhhhhhcCCCC---ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEE----
Confidence            45899999999999999999998764   22223344444444444467889999999999876554433333332    


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccccc-CeEEEEEeCCCC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVF-DYMIVVFTGGNE  149 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~-~~~ivV~nk~D~  149 (259)
                      ..++-++++++|+|+-.+++  .+.+++.-.+.||...+ .|--+.+.|-|.
T Consensus       132 avartcnli~~vld~~kp~~--hk~~ie~eleg~girlnk~pp~i~~kkKdk  181 (358)
T KOG1487|consen  132 AVARTCNLIFIVLDVLKPLS--HKKIIEKELEGFGIRLNKQPPNIGTKKKDK  181 (358)
T ss_pred             EEeecccEEEEEeeccCccc--HHHHHHHhhhcceeeccCCCCCcccccccc
Confidence            23445589999999874544  34566654455665433 244444444443

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.21  E-value=1.1e-06  Score=75.02  Aligned_cols=63  Identities=25%  Similarity=0.388  Sum_probs=48.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA   84 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~   84 (259)
                      ....++.++|-+|+||||+||+|........+. .+|.|+..+..    .-+..+.|+|.||+.....
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~-~pGvT~smqeV----~Ldk~i~llDsPgiv~~~~  312 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGN-VPGVTRSMQEV----KLDKKIRLLDSPGIVPPSI  312 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCC-Cccchhhhhhe----eccCCceeccCCceeecCC
Confidence            345899999999999999999999888766654 46677655543    3457899999999875543

>cd01859 MJ1464 MJ1464

Probab=98.17  E-value=1.1e-05  Score=61.76  Aligned_cols=88  Identities=16%  Similarity=0.128  Sum_probs=53.6

Q ss_pred             CCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEE
Q 024985          102 DGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRV  181 (259)
Q Consensus       102 ~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  181 (259)
                      .++|++|+|+|++.+....+..+...+.. .+    +|+++|+||+|+.+.  .....         +..+.+..+..++
T Consensus        11 ~~aD~vl~V~D~~~~~~~~~~~l~~~~~~-~~----~p~iiv~NK~Dl~~~--~~~~~---------~~~~~~~~~~~~~   74 (156)
T cd01859          11 KESDVVLEVLDARDPELTRSRKLERYVLE-LG----KKLLIVLNKADLVPK--EVLEK---------WKSIKESEGIPVV   74 (156)
T ss_pred             hhCCEEEEEeeCCCCcccCCHHHHHHHHh-CC----CcEEEEEEhHHhCCH--HHHHH---------HHHHHHhCCCcEE
Confidence            35699999999975555555444444432 23    499999999998643  11111         1112222233444


Q ss_pred             EEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          182 LFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       182 ~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      .+++..      ..++.+|++.+.++++..
T Consensus        75 ~iSa~~------~~gi~~L~~~l~~~~~~~   98 (156)
T cd01859          75 YVSAKE------RLGTKILRRTIKELAKID   98 (156)
T ss_pred             EEEccc------cccHHHHHHHHHHHHhhc
Confidence            444433      268999999999888753

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.17  E-value=3.2e-05  Score=66.02  Aligned_cols=122  Identities=16%  Similarity=0.161  Sum_probs=74.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC------------CCCcceeeEEEEEEeeC----------------
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG------------SSGVTKTCEMQRTMLKD----------------   67 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~------------~~~~T~~~~~~~~~~~~----------------   67 (259)
                      ......|+.+|..++|||||.-+|.-...-.....            -.+.|....+.-+.+.+                
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            34568899999999999999988753332000000            01222222222211111                


Q ss_pred             ------CcEEEEEeCCCCCCCCCChHHHHHH-HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeE
Q 024985           68 ------GQVVNVIDTPGLFDSSADSEFVSKE-IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYM  140 (259)
Q Consensus        68 ------~~~~~liDTPG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~  140 (259)
                            ++-+.|+||-|...       |.+. +...   .-.++|-.++++-++++.+...++-|-..... +    -|+
T Consensus       194 ~vv~~aDklVsfVDtvGHEp-------wLrTtirGL---~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~-~----lPv  258 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEP-------WLRTTIRGL---LGQKVDYGLLVVAADDGVTKMTKEHLGIALAM-E----LPV  258 (527)
T ss_pred             HhhhhcccEEEEEecCCccH-------HHHHHHHHH---hccccceEEEEEEccCCcchhhhHhhhhhhhh-c----CCE
Confidence                  23488999999431       2222 2222   22367899999999988888777766655432 2    299


Q ss_pred             EEEEeCCCCCCC
Q 024985          141 IVVFTGGNELED  152 (259)
Q Consensus       141 ivV~nk~D~~~~  152 (259)
                      +||+||+|..++
T Consensus       259 iVvvTK~D~~~d  270 (527)
T COG5258         259 IVVVTKIDMVPD  270 (527)
T ss_pred             EEEEEecccCcH
Confidence            999999999877

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.17  E-value=6.3e-05  Score=58.49  Aligned_cols=73  Identities=19%  Similarity=0.168  Sum_probs=41.1

Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG  147 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~  147 (259)
                      +..++++||||....   .......+.....  ...++.+++|+++...  ......+..+.+..+     ..-+|+||.
T Consensus        82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~--~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-----~~~viltk~  149 (173)
T cd03115          82 NFDVVIVDTAGRLQI---DENLMEELKKIKR--VVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-----ITGVILTKL  149 (173)
T ss_pred             CCCEEEEECcccchh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-----CCEEEEECC
Confidence            446899999996531   1222333333222  1246899999998522  222233333333223     456888999


Q ss_pred             CCCCC
Q 024985          148 NELED  152 (259)
Q Consensus       148 D~~~~  152 (259)
                      |....
T Consensus       150 D~~~~  154 (173)
T cd03115         150 DGDAR  154 (173)
T ss_pred             cCCCC
Confidence            97754

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=98.14  E-value=1.4e-06  Score=74.28  Aligned_cols=63  Identities=22%  Similarity=0.284  Sum_probs=45.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~   83 (259)
                      .....-|.++|.+|+||||+||+|-...+..+.. -+|.|...++..    --+.+.+||+||+-...
T Consensus       304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAP-IpGETKVWQYIt----LmkrIfLIDcPGvVyps  366 (572)
T KOG2423|consen  304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAP-IPGETKVWQYIT----LMKRIFLIDCPGVVYPS  366 (572)
T ss_pred             CccceeeeeecCCCCchHHHHHHHhhcccccccC-CCCcchHHHHHH----HHhceeEecCCCccCCC
Confidence            3456789999999999999999999888755432 234454444332    12578999999986544

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=5.5e-06  Score=70.28  Aligned_cols=125  Identities=18%  Similarity=0.112  Sum_probs=74.3

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCCccccc------------CCCCCcceeeEE--EEEE---------------
Q 024985           14 SPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSK------------AGSSGVTKTCEM--QRTM---------------   64 (259)
Q Consensus        14 s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~------------~~~~~~T~~~~~--~~~~---------------   64 (259)
                      +...-..+++++|--.+|||||+-.|+....-...            .-..+.|..+..  .++.               
T Consensus       162 ~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taE  241 (591)
T KOG1143|consen  162 SQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAE  241 (591)
T ss_pred             cccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHH
Confidence            33445689999999999999999888754321100            000111111110  0000               


Q ss_pred             ---eeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEE
Q 024985           65 ---LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMI  141 (259)
Q Consensus        65 ---~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~i  141 (259)
                         .....-+.+||.+|...       +.+....-+  .---+|..++|+.++.+++....+-|-.+..+ .    .|++
T Consensus       242 Ei~e~SSKlvTfiDLAGh~k-------Y~~TTi~gL--tgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL-~----iPfF  307 (591)
T KOG1143|consen  242 EIVEKSSKLVTFIDLAGHAK-------YQKTTIHGL--TGYTPHFACLVVSADRGITWTTREHLGLIAAL-N----IPFF  307 (591)
T ss_pred             HHHhhhcceEEEeecccchh-------hheeeeeec--ccCCCceEEEEEEcCCCCccccHHHHHHHHHh-C----CCeE
Confidence               01122488899888431       111111111  12246899999999888888777777777663 3    2999


Q ss_pred             EEEeCCCCCCC
Q 024985          142 VVFTGGNELED  152 (259)
Q Consensus       142 vV~nk~D~~~~  152 (259)
                      |++||+|+...
T Consensus       308 vlvtK~Dl~~~  318 (591)
T KOG1143|consen  308 VLVTKMDLVDR  318 (591)
T ss_pred             EEEEeeccccc
Confidence            99999999876

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=98.13  E-value=2.1e-07  Score=71.18  Aligned_cols=163  Identities=13%  Similarity=0.124  Sum_probs=91.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCccccc-CCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSK-AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~-~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      .+++++|.-|+||||++...+-... ... .+..+...-..........-.++.+||..|-.           ++..+..
T Consensus        26 ~k~lVig~~~vgkts~i~ryv~~nf-s~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQe-----------rfg~mtr   93 (229)
T KOG4423|consen   26 FKVLVIGDLGVGKTSSIKRYVHQNF-SYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQE-----------RFGNMTR   93 (229)
T ss_pred             hhhheeeeccccchhHHHHHHHHHH-HHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhh-----------hhcceEE
Confidence            5899999999999999987653331 010 01112221111111111111267789999943           3333444


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHH-------hcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESL-------FGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE  171 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~-------~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (259)
                      .+++.+|+..+|+|.++..+.+-  ..++..++       +|.+.  |+++..||||.-..           ..+..-+.
T Consensus        94 Vyykea~~~~iVfdvt~s~tfe~--~skwkqdldsk~qLpng~Pv--~~vllankCd~e~~-----------a~~~~~~~  158 (229)
T KOG4423|consen   94 VYYKEAHGAFIVFDVTRSLTFEP--VSKWKQDLDSKLQLPNGTPV--PCVLLANKCDQEKS-----------AKNEATRQ  158 (229)
T ss_pred             EEecCCcceEEEEEccccccccH--HHHHHHhccCcccCCCCCcc--hheeccchhccChH-----------hhhhhHHH
Confidence            56788999999999996666543  23333322       24333  88999999997654           11222223


Q ss_pred             HHHHcCCc--EEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985          172 ILQLCENR--RVLFDNKTKDAATRTEQVGKLISLVNSVILENGG  213 (259)
Q Consensus       172 ~~~~~~~~--~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~  213 (259)
                      +-+.+.+.  .-.|..+.+..    .++.|..+.+.+.+-.+..
T Consensus       159 ~d~f~kengf~gwtets~Ken----kni~Ea~r~lVe~~lvnd~  198 (229)
T KOG4423|consen  159 FDNFKKENGFEGWTETSAKEN----KNIPEAQRELVEKILVNDE  198 (229)
T ss_pred             HHHHHhccCccceeeeccccc----cChhHHHHHHHHHHHhhcc
Confidence            33344332  22455554443    6788887777666555543

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.12  E-value=1.7e-05  Score=66.74  Aligned_cols=147  Identities=16%  Similarity=0.163  Sum_probs=78.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC------CCcccccCCC---------------CCcceeeEEEE----------E--
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILG------RRAFKSKAGS---------------SGVTKTCEMQR----------T--   63 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~------~~~~~~~~~~---------------~~~T~~~~~~~----------~--   63 (259)
                      +.+..|+++|-.|+||||.|-.|..      ..+......+               .++..-....+          +  
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~  216 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA  216 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence            4578999999999999999988742      1111100000               01100000000          0  


Q ss_pred             EeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh---hcC-CCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe
Q 024985           64 MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG---MAK-DGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY  139 (259)
Q Consensus        64 ~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~  139 (259)
                      -...+..++||||.|-..+.   ..++.++.+...   ... ..+|-+++|+|++.+-..  ..-.+.+.+..+     -
T Consensus       217 Akar~~DvvliDTAGRLhnk---~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna--l~QAk~F~eav~-----l  286 (340)
T COG0552         217 AKARGIDVVLIDTAGRLHNK---KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA--LSQAKIFNEAVG-----L  286 (340)
T ss_pred             HHHcCCCEEEEeCcccccCc---hhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH--HHHHHHHHHhcC-----C
Confidence            01235579999999976443   334555544433   222 245779999999744222  233444444444     3


Q ss_pred             EEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985          140 MIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       140 ~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                      .=+|+||+|....             --.+-.+....+-++.++-..
T Consensus       287 ~GiIlTKlDgtAK-------------GG~il~I~~~l~~PI~fiGvG  320 (340)
T COG0552         287 DGIILTKLDGTAK-------------GGIILSIAYELGIPIKFIGVG  320 (340)
T ss_pred             ceEEEEecccCCC-------------cceeeeHHHHhCCCEEEEeCC
Confidence            3488999995422             112334455556666555443

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.09  E-value=9.1e-06  Score=63.82  Aligned_cols=78  Identities=15%  Similarity=0.192  Sum_probs=46.5

Q ss_pred             EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH---HHHHHHHHHHhcccccCeEEEEEeC
Q 024985           70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG---GAAIHSLESLFGKKVFDYMIVVFTG  146 (259)
Q Consensus        70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~---~~~l~~l~~~~~~~~~~~~ivV~nk  146 (259)
                      .+.++|+||-.+-.. .--+...+.+++....-.+ +++|++|.. -+....   ...+..+.....-+  .|.|=|++|
T Consensus        99 dylifDcPGQIELyt-H~pVm~~iv~hl~~~~F~~-c~Vylldsq-f~vD~~KfiSG~lsAlsAMi~lE--~P~INvlsK  173 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYT-HLPVMPQIVEHLKQWNFNV-CVVYLLDSQ-FLVDSTKFISGCLSALSAMISLE--VPHINVLSK  173 (273)
T ss_pred             CEEEEeCCCeeEEee-cChhHHHHHHHHhcccCce-eEEEEeccc-hhhhHHHHHHHHHHHHHHHHHhc--CcchhhhhH
Confidence            689999999764321 2235667777766543343 567777764 222222   22344444333323  399999999


Q ss_pred             CCCCCC
Q 024985          147 GNELED  152 (259)
Q Consensus       147 ~D~~~~  152 (259)
                      +|++.+
T Consensus       174 MDLlk~  179 (273)
T KOG1534|consen  174 MDLLKD  179 (273)
T ss_pred             HHHhhh
Confidence            999865

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.09  E-value=2.1e-05  Score=68.19  Aligned_cols=169  Identities=17%  Similarity=0.220  Sum_probs=89.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCC-----------------CcccccCCCCCcceeeEEEE-----EEeeCC--cEE
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGR-----------------RAFKSKAGSSGVTKTCEMQR-----TMLKDG--QVV   71 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~-----------------~~~~~~~~~~~~T~~~~~~~-----~~~~~~--~~~   71 (259)
                      ..+...|.+|||..+||||||..+...                 +.+.++....-.|+.+.+..     +...++  .++
T Consensus        14 T~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kV   93 (492)
T PF09547_consen   14 TGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKV   93 (492)
T ss_pred             cCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEE
Confidence            456789999999999999999997532                 23333333333444444332     221222  379


Q ss_pred             EEEeCCCCCCCCCC--hHHHHHHH------------HHHHhhc-----CCCcc-EEEEEEeCC-CCCC-----HhHHHHH
Q 024985           72 NVIDTPGLFDSSAD--SEFVSKEI------------VKCIGMA-----KDGIH-AVLLVFSVR-NRFS-----EEGGAAI  125 (259)
Q Consensus        72 ~liDTPG~~~~~~~--~~~~~~~~------------~~~~~~~-----~~~~~-~il~v~d~~-~~~~-----~~~~~~l  125 (259)
                      ++||+.|+.-..+.  .+.-..++            ..++...     ...+- ++++-.|.+ ..+.     ..+.+.+
T Consensus        94 RLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI  173 (492)
T PF09547_consen   94 RLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVI  173 (492)
T ss_pred             EEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHH
Confidence            99999887521110  00000111            1111111     11222 333444654 2333     3345667


Q ss_pred             HHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHH
Q 024985          126 HSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLV  204 (259)
Q Consensus       126 ~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i  204 (259)
                      +.|++ .|+    |++|++|-.+-..+  ++         .....++.++++-.+..++...-.    ...+..+|+.+
T Consensus       174 ~ELk~-igK----PFvillNs~~P~s~--et---------~~L~~eL~ekY~vpVlpvnc~~l~----~~DI~~Il~~v  232 (492)
T PF09547_consen  174 EELKE-IGK----PFVILLNSTKPYSE--ET---------QELAEELEEKYDVPVLPVNCEQLR----EEDITRILEEV  232 (492)
T ss_pred             HHHHH-hCC----CEEEEEeCCCCCCH--HH---------HHHHHHHHHHhCCcEEEeehHHcC----HHHHHHHHHHH
Confidence            77777 354    99999997764332  11         123446667777777777765322    24555555543

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.07  E-value=1.8e-05  Score=66.46  Aligned_cols=96  Identities=13%  Similarity=0.138  Sum_probs=58.0

Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985           92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE  171 (259)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (259)
                      ...+.+......+|++|+|+|+..+++..+..+.+.+.   +    +|+++|+||+|+.+.  .....+.         .
T Consensus        10 k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~---~----kp~IiVlNK~DL~~~--~~~~~~~---------~   71 (276)
T TIGR03596        10 KARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG---N----KPRLIVLNKADLADP--AVTKQWL---------K   71 (276)
T ss_pred             HHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC---C----CCEEEEEEccccCCH--HHHHHHH---------H
Confidence            33444445556779999999998666655544444441   2    499999999998643  2222211         1


Q ss_pred             HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      ..+..+..++.+++...      .++.+|++.+.+++++.
T Consensus        72 ~~~~~~~~vi~iSa~~~------~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        72 YFEEKGIKALAINAKKG------KGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             HHHHcCCeEEEEECCCc------ccHHHHHHHHHHHHHHh
Confidence            12222334455555432      57888988888777543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.03  E-value=6.8e-05  Score=56.86  Aligned_cols=20  Identities=25%  Similarity=0.466  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q 024985           22 LVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        22 I~l~G~~g~GKSslin~l~~   41 (259)
                      |.++|++|+||||++..+..
T Consensus         2 i~~~G~~GsGKTt~~~~l~~   21 (148)
T cd03114           2 IGITGVPGAGKSTLIDALIT   21 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999988753

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd01858 NGP_1 NGP-1

Probab=98.02  E-value=2.2e-05  Score=60.10  Aligned_cols=90  Identities=14%  Similarity=0.164  Sum_probs=55.1

Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR  179 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (259)
                      +...+|++++|+|+..++...+..+.+.+... .  ...|+++|+||+|+.+.  ..+..++        ..+.+..  .
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~-~--~~~p~ilVlNKiDl~~~--~~~~~~~--------~~~~~~~--~   69 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE-K--PHKHLIFVLNKCDLVPT--WVTARWV--------KILSKEY--P   69 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHHHhc-c--CCCCEEEEEEchhcCCH--HHHHHHH--------HHHhcCC--c
Confidence            45577999999999866666666677776642 1  12499999999999754  2222222        1222211  2


Q ss_pred             EEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          180 RVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ...|..++..    ..++.+|++.+.++.
T Consensus        70 ~~~~~iSa~~----~~~~~~L~~~l~~~~   94 (157)
T cd01858          70 TIAFHASINN----PFGKGSLIQLLRQFS   94 (157)
T ss_pred             EEEEEeeccc----cccHHHHHHHHHHHH
Confidence            2233333332    267888888887764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.01  E-value=4e-06  Score=72.83  Aligned_cols=58  Identities=33%  Similarity=0.416  Sum_probs=36.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCC------CCCcceeeEEEEEEeeCCcEEEEEeCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAG------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLF   80 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~T~~~~~~~~~~~~~~~~~liDTPG~~   80 (259)
                      ..+++++|.+|+|||||+|+|+|......+.-      ...+|+......   ..+ ...++||||+.
T Consensus       195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~---l~~-~~~l~DtpG~~  258 (356)
T PRK01889        195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHP---LPS-GGLLIDTPGMR  258 (356)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEE---ecC-CCeecCCCchh
Confidence            35899999999999999999998765333211      111222222222   122 23588999975

>cd01856 YlqF YlqF

Probab=97.99  E-value=2.6e-05  Score=60.66  Aligned_cols=94  Identities=14%  Similarity=0.156  Sum_probs=54.5

Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985           92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE  171 (259)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (259)
                      .+...+......+|++++|+|+..+....+..+++.+   .+    +|+++|+||+|+.+.  .....++         +
T Consensus         8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~---~~----k~~ilVlNK~Dl~~~--~~~~~~~---------~   69 (171)
T cd01856           8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL---GN----KPRIIVLNKADLADP--KKTKKWL---------K   69 (171)
T ss_pred             HHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh---cC----CCEEEEEehhhcCCh--HHHHHHH---------H
Confidence            3334444455677999999999755554444333332   22    489999999998643  2221111         1


Q ss_pred             HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ..+.....++..+...      ..++.+|++.+.+.++
T Consensus        70 ~~~~~~~~vi~iSa~~------~~gi~~L~~~l~~~l~  101 (171)
T cd01856          70 YFESKGEKVLFVNAKS------GKGVKKLLKAAKKLLK  101 (171)
T ss_pred             HHHhcCCeEEEEECCC------cccHHHHHHHHHHHHH
Confidence            1222223344444432      2689999998888764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.99  E-value=4.8e-06  Score=77.25  Aligned_cols=130  Identities=17%  Similarity=0.158  Sum_probs=83.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEE----------------------------------
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQR----------------------------------   62 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~----------------------------------   62 (259)
                      ..-+.|+++|..++||||+++++.|....+-+..  -+|+.+.+..                                  
T Consensus        27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~g--ivTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~  104 (657)
T KOG0446|consen   27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVG--IVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIR  104 (657)
T ss_pred             ccCCceEEecCCCCcchhHHHHhhcccccccccc--ceecccceeecccccCCcccchhccccccccccCCHHHHHHHHH
Confidence            4568999999999999999999999776554321  1222111111                                  


Q ss_pred             ---------------------EEeeCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHHHhhcCCCccEEEEEEeCC-CCCC
Q 024985           63 ---------------------TMLKDGQVVNVIDTPGLFDSSA--DSEFVSKEIVKCIGMAKDGIHAVLLVFSVR-NRFS  118 (259)
Q Consensus        63 ---------------------~~~~~~~~~~liDTPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~d~~-~~~~  118 (259)
                                           +....-.++.+||+||+.....  ++..+..++..++..+....+++++.+... ..+.
T Consensus       105 ~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~a  184 (657)
T KOG0446|consen  105 SETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIA  184 (657)
T ss_pred             hhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhhh
Confidence                                 0101112588999999985443  345677788888777777778887777554 2222


Q ss_pred             HhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          119 EEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       119 ~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                        ..+.+....+.-  +....++.|+||+|+.+.
T Consensus       185 --ts~alkiarevD--p~g~RTigvitK~Dlmdk  214 (657)
T KOG0446|consen  185 --TSPALVVAREVD--PGGSRTLEVITKFDFMDK  214 (657)
T ss_pred             --cCHHHHHHHhhC--CCccchhHHhhhHHhhhc
Confidence              233555555531  233589999999999854

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=97.96  E-value=7.2e-05  Score=62.19  Aligned_cols=109  Identities=19%  Similarity=0.195  Sum_probs=63.7

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCcceeeEEEEEE--eeCCcEEEEEeCCCCCCC-CCChHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRR-AFKSKAGSSGVTKTCEMQRTM--LKDGQVVNVIDTPGLFDS-SADSEFVSK   91 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~-~~~~~~~~~~~T~~~~~~~~~--~~~~~~~~liDTPG~~~~-~~~~~~~~~   91 (259)
                      ..+...|.++|+..+|||.|+|.|++.. .|..+.+..++|...-.....  ...+..+.++||.|+.+. ......-..
T Consensus        18 ~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~~~~~~~~d~~   97 (260)
T PF02263_consen   18 DQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDVEQSDEKYDAK   97 (260)
T ss_dssp             TSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTTTCCCCHHCHH
T ss_pred             CCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccccccCcccccHH
Confidence            3455789999999999999999999753 455555556667654443322  123458999999999883 222221111


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHH
Q 024985           92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLES  130 (259)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~  130 (259)
                      -+.-++-.+    ..+||=.  ...+...+...|..+.+
T Consensus        98 if~Ls~LLS----S~~IyN~--~~~i~~~~l~~L~~~~~  130 (260)
T PF02263_consen   98 IFALSMLLS----SVLIYNS--MGNIDEDDLDQLELFTE  130 (260)
T ss_dssp             HHHHHHHH-----SEEEEEE--CSSSSHHHHHCCHHHHH
T ss_pred             HHHHHHHHh----CceeeCC--CCccchhHHHHHHHHHH
Confidence            222121222    3444444  44566666555554433

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.90  E-value=5.8e-05  Score=54.84  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 024985           21 TLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      +|+++|.+|+|||+|+..+....
T Consensus         2 kvv~~G~~gvGKt~l~~~~~~~~   24 (124)
T smart00010        2 KVVGIGDSGVGKVGKSARFVQFP   24 (124)
T ss_pred             EEEEECCCChhHHHHHHHHhcCC
Confidence            79999999999999999985443

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.90  E-value=3.1e-05  Score=60.30  Aligned_cols=23  Identities=26%  Similarity=0.266  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      .+.|.+.|++|||||+|+-.++.
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~   35 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLR   35 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHH
Confidence            37999999999999999988653

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=9.1e-05  Score=59.50  Aligned_cols=126  Identities=17%  Similarity=0.137  Sum_probs=68.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+++|+|+|--.+||||+-...+....+..... ...|.......+. ..=.++.+||.||-.+.-.+.-...      
T Consensus        25 ~~kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlf-lESTski~~d~is-~sfinf~v~dfPGQ~~~Fd~s~D~e------   96 (347)
T KOG3887|consen   25 GMKPRILLMGLRRSGKSSIQKVVFHKMSPNETLF-LESTSKITRDHIS-NSFINFQVWDFPGQMDFFDPSFDYE------   96 (347)
T ss_pred             CCCceEEEEeecccCcchhhheeeeccCCCceeE-eeccCcccHhhhh-hhhcceEEeecCCccccCCCccCHH------
Confidence            3457899999999999998776654432111100 0011111111111 0113688999999653321111111      


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                        ....++-+++||+|+.+.+.+.-..+...+...+.....-++=|.+.|.|.+.+
T Consensus        97 --~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd  150 (347)
T KOG3887|consen   97 --MIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD  150 (347)
T ss_pred             --HHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence              123355899999998743332222233334444444444467788999999865

>PRK13695 putative NTPase; Provisional

Probab=97.86  E-value=0.00026  Score=55.12  Aligned_cols=22  Identities=23%  Similarity=0.256  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 024985           21 TLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +|+|.|.+|+|||||+..+.+.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~   23 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAEL   23 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999987643

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.85  E-value=8.4e-05  Score=62.77  Aligned_cols=94  Identities=13%  Similarity=0.160  Sum_probs=55.5

Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985           93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI  172 (259)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (259)
                      ..+.+......+|++|+|+|+..+++..+..+.+.+.       .+|+++|+||+|+.+.  ...+.++         ..
T Consensus        14 ~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~-------~kp~iiVlNK~DL~~~--~~~~~~~---------~~   75 (287)
T PRK09563         14 ARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG-------NKPRLLILNKSDLADP--EVTKKWI---------EY   75 (287)
T ss_pred             HHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC-------CCCEEEEEEchhcCCH--HHHHHHH---------HH
Confidence            3334445556779999999997666655444433332       2499999999998643  2222211         11


Q ss_pred             HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .+..+..++.++....      .++.+|++.+.+++++
T Consensus        76 ~~~~~~~vi~vSa~~~------~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         76 FEEQGIKALAINAKKG------QGVKKILKAAKKLLKE  107 (287)
T ss_pred             HHHcCCeEEEEECCCc------ccHHHHHHHHHHHHHH
Confidence            1222333444554432      6788888888877654

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=5.8e-05  Score=64.56  Aligned_cols=121  Identities=15%  Similarity=0.168  Sum_probs=69.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC-------------CcccccCC----CCCcceeeEEEEE-E---------------e
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR-------------RAFKSKAG----SSGVTKTCEMQRT-M---------------L   65 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~-------------~~~~~~~~----~~~~T~~~~~~~~-~---------------~   65 (259)
                      +-.|+++|--|+||||.+-.+...             +.|..+..    ....-..+.++.. .               .
T Consensus       101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK  180 (483)
T KOG0780|consen  101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK  180 (483)
T ss_pred             CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence            458999999999999998776411             11111100    0011122222221 0               0


Q ss_pred             eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEe
Q 024985           66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFT  145 (259)
Q Consensus        66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~n  145 (259)
                      .++..++|+||.|-+   .....+.+++......  -.+|-+|||+|++-+...  ......+++..+     -.-+++|
T Consensus       181 ke~fdvIIvDTSGRh---~qe~sLfeEM~~v~~a--i~Pd~vi~VmDasiGQaa--e~Qa~aFk~~vd-----vg~vIlT  248 (483)
T KOG0780|consen  181 KENFDVIIVDTSGRH---KQEASLFEEMKQVSKA--IKPDEIIFVMDASIGQAA--EAQARAFKETVD-----VGAVILT  248 (483)
T ss_pred             hcCCcEEEEeCCCch---hhhHHHHHHHHHHHhh--cCCCeEEEEEeccccHhH--HHHHHHHHHhhc-----cceEEEE
Confidence            224479999999966   3345566666655433  367999999999733222  223444444333     4458889


Q ss_pred             CCCCCC
Q 024985          146 GGNELE  151 (259)
Q Consensus       146 k~D~~~  151 (259)
                      |.|.-.
T Consensus       249 KlDGha  254 (483)
T KOG0780|consen  249 KLDGHA  254 (483)
T ss_pred             ecccCC
Confidence            999753

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=97.80  E-value=0.00039  Score=62.35  Aligned_cols=27  Identities=22%  Similarity=0.508  Sum_probs=23.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      ....|+|+|..++||||||.+|.+.+.
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e~   50 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIED   50 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccCC
Confidence            457999999999999999999987654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.77  E-value=4.6e-05  Score=57.25  Aligned_cols=50  Identities=10%  Similarity=0.054  Sum_probs=37.4

Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ....+|++++|+|+..+.+..+..+.+++....   ..+|+++|+||+|+.++
T Consensus         8 ~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~---~~k~~iivlNK~DL~~~   57 (141)
T cd01857           8 VVERSDIVVQIVDARNPLLFRPPDLERYVKEVD---PRKKNILLLNKADLLTE   57 (141)
T ss_pred             HHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc---CCCcEEEEEechhcCCH
Confidence            344569999999998777767667777776531   12499999999998754

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=97.75  E-value=0.00032  Score=55.42  Aligned_cols=95  Identities=14%  Similarity=-0.029  Sum_probs=54.8

Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985           93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI  172 (259)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (259)
                      +...+......+|++++|+|+++........+   ... .   ...|+++|+||+|+...  .....        .+...
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l---~~~-~---~~~~~ilV~NK~Dl~~~--~~~~~--------~~~~~   86 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRL---RLF-G---GNNPVILVGNKIDLLPK--DKNLV--------RIKNW   86 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCccchhH---HHh-c---CCCcEEEEEEchhcCCC--CCCHH--------HHHHH
Confidence            45666677888999999999984432222222   111 1   12499999999998754  11111        11111


Q ss_pred             H-----HHcC---CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          173 L-----QLCE---NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       173 ~-----~~~~---~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .     +..+   ..++.+++..      ..++.+|++.|.+.++.
T Consensus        87 ~~~~~~~~~~~~~~~i~~vSA~~------~~gi~eL~~~l~~~l~~  126 (190)
T cd01855          87 LRAKAAAGLGLKPKDVILISAKK------GWGVEELINAIKKLAKK  126 (190)
T ss_pred             HHHHHHhhcCCCcccEEEEECCC------CCCHHHHHHHHHHHhhc
Confidence            1     1111   1233444332      27899999999888753

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=97.74  E-value=0.0018  Score=54.47  Aligned_cols=28  Identities=18%  Similarity=0.493  Sum_probs=24.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      ...+|+++|..|+||||||..|-|.+-.
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e~~   78 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSETV   78 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhccccc
Confidence            3578999999999999999999988743

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.73  E-value=0.00014  Score=45.03  Aligned_cols=42  Identities=21%  Similarity=0.312  Sum_probs=28.3

Q ss_pred             ccEEEEEEeCC--CCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985          104 IHAVLLVFSVR--NRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGN  148 (259)
Q Consensus       104 ~~~il~v~d~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D  148 (259)
                      .++++|++|++  .+.+-++ ..+++.++..|+.   +|+++|+||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~---~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN---KPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT---S-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC---CCEEEEEeccC
Confidence            47999999997  4555544 6778888888852   59999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.71  E-value=3e-05  Score=59.88  Aligned_cols=30  Identities=30%  Similarity=0.354  Sum_probs=25.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccccc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSK   48 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~   48 (259)
                      .-.++++|++|+|||||+|.|.|...+.++
T Consensus        25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G   54 (231)
T COG3840          25 GEIVAILGPSGAGKSTLLNLIAGFETPASG   54 (231)
T ss_pred             CcEEEEECCCCccHHHHHHHHHhccCCCCc
Confidence            458999999999999999999998765443

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.66  E-value=4.4e-05  Score=61.84  Aligned_cols=30  Identities=27%  Similarity=0.286  Sum_probs=25.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccccc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSK   48 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~   48 (259)
                      .-.|.++|+||||||||+|.|.|-..+..+
T Consensus        29 GEfvsilGpSGcGKSTLLriiAGL~~p~~G   58 (248)
T COG1116          29 GEFVAILGPSGCGKSTLLRLIAGLEKPTSG   58 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            346899999999999999999998764444

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.65  E-value=0.00026  Score=54.08  Aligned_cols=83  Identities=12%  Similarity=0.124  Sum_probs=46.4

Q ss_pred             cEEEEEEeCCCCCCHhHHHHH-HHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEE
Q 024985          105 HAVLLVFSVRNRFSEEGGAAI-HSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLF  183 (259)
Q Consensus       105 ~~il~v~d~~~~~~~~~~~~l-~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  183 (259)
                      |++|+|+|+..+.+..+..+. ..+.. .    .+|+++|+||+|+.+.  ..+.+++        ..+.+.....++..
T Consensus         1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~-~----~~p~IiVlNK~Dl~~~--~~~~~~~--------~~~~~~~~~~ii~v   65 (155)
T cd01849           1 DVILEVLDARDPLGTRSPDIERVLIKE-K----GKKLILVLNKADLVPK--EVLRKWL--------AYLRHSYPTIPFKI   65 (155)
T ss_pred             CEEEEEEeccCCccccCHHHHHHHHhc-C----CCCEEEEEechhcCCH--HHHHHHH--------HHHHhhCCceEEEE
Confidence            689999999855554443333 12222 2    2499999999998754  2222221        12222223333444


Q ss_pred             eCCCcccccchhHHHHHHHHHHHHH
Q 024985          184 DNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       184 ~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ++..  +    .++.+|++.+.+..
T Consensus        66 Sa~~--~----~gi~~L~~~i~~~~   84 (155)
T cd01849          66 SATN--G----QGIEKKESAFTKQT   84 (155)
T ss_pred             eccC--C----cChhhHHHHHHHHh
Confidence            4432  2    57888888776543

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.62  E-value=0.00011  Score=58.77  Aligned_cols=80  Identities=14%  Similarity=0.147  Sum_probs=39.9

Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC--CCCCHhHHHHHHHHHHHhcccccCeEEEEEeC
Q 024985           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR--NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTG  146 (259)
Q Consensus        69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk  146 (259)
                      ..+.++|+||--+.-.......+ +.+.+... .-.-+++-++|..  ...+.--..++-.+.-++.-+.  |-+=|+.|
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~-I~~~Lek~-~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~mel--phVNvlSK  172 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNK-IFRKLEKL-DYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMEL--PHVNVLSK  172 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHH-HHHHHHHc-CceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcc--cchhhhhH
Confidence            36899999996533222222332 33333221 1112344555543  1111112223334444444443  88889999


Q ss_pred             CCCCCC
Q 024985          147 GNELED  152 (259)
Q Consensus       147 ~D~~~~  152 (259)
                      +|++..
T Consensus       173 ~Dl~~~  178 (290)
T KOG1533|consen  173 ADLLKK  178 (290)
T ss_pred             hHHHHh
Confidence            999865

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.61  E-value=0.0024  Score=54.67  Aligned_cols=75  Identities=19%  Similarity=0.139  Sum_probs=42.0

Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHH-HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985           69 QVVNVIDTPGLFDSSADSEFVSKEIVKC-IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG  147 (259)
Q Consensus        69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~  147 (259)
                      ....+|.|-|+.++..    +...+... ........|.++-|+|+. .+.......-+.+..    +...-=+||+||.
T Consensus        85 ~D~ivIEtTGlA~P~p----v~~t~~~~~~l~~~~~ld~vvtvVDa~-~~~~~~~~~~~~~~~----Qia~AD~ivlNK~  155 (323)
T COG0523          85 PDRLVIETTGLADPAP----VIQTFLTDPELADGVRLDGVVTVVDAA-HFLEGLDAIAELAED----QLAFADVIVLNKT  155 (323)
T ss_pred             CCEEEEeCCCCCCCHH----HHHHhccccccccceeeceEEEEEeHH-HhhhhHHHHHHHHHH----HHHhCcEEEEecc
Confidence            3588999999976521    22222211 111233568899999998 433322212222222    2222457899999


Q ss_pred             CCCCC
Q 024985          148 NELED  152 (259)
Q Consensus       148 D~~~~  152 (259)
                      |++++
T Consensus       156 Dlv~~  160 (323)
T COG0523         156 DLVDA  160 (323)
T ss_pred             cCCCH
Confidence            99976

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.61  E-value=0.00016  Score=57.94  Aligned_cols=46  Identities=22%  Similarity=0.330  Sum_probs=28.8

Q ss_pred             CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985          101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL  150 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~  150 (259)
                      ..++|.+|.|+|++-+ +-..-+-++.|.+-.|   .+++.+|+||+|..
T Consensus       153 ~~~vD~vivVvDpS~~-sl~taeri~~L~~elg---~k~i~~V~NKv~e~  198 (255)
T COG3640         153 IEGVDLVIVVVDPSYK-SLRTAERIKELAEELG---IKRIFVVLNKVDEE  198 (255)
T ss_pred             ccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHhC---CceEEEEEeeccch
Confidence            3578999999998721 1112222333333334   36999999999955

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.60  E-value=0.00097  Score=49.93  Aligned_cols=100  Identities=18%  Similarity=0.119  Sum_probs=55.1

Q ss_pred             EEEcCCCCcHHHHHHHHhCC------CcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           23 VLVGRTGNGKSATGNSILGR------RAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        23 ~l~G~~g~GKSslin~l~~~------~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      +.-|..|+|||++--.+...      .....+....+..          . ...++++|||+..+.         .....
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~----------~-~yd~VIiD~p~~~~~---------~~~~~   63 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLAN----------L-DYDYIIIDTGAGISD---------NVLDF   63 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCC----------C-CCCEEEEECCCCCCH---------HHHHH
Confidence            45678899999997665421      1111111110000          0 146899999985421         11222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNEL  150 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~  150 (259)
                      +.    .+|.+++|++.+ ..+-.+ ...++.+.+..+   ..++.+|+|+++..
T Consensus        64 l~----~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~~---~~~~~lVvN~~~~~  110 (139)
T cd02038          64 FL----AADEVIVVTTPE-PTSITDAYALIKKLAKQLR---VLNFRVVVNRAESP  110 (139)
T ss_pred             HH----hCCeEEEEcCCC-hhHHHHHHHHHHHHHHhcC---CCCEEEEEeCCCCH
Confidence            22    348999999887 333222 445566654322   23788999998743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.56  E-value=0.0055  Score=46.53  Aligned_cols=118  Identities=13%  Similarity=0.208  Sum_probs=63.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC---CcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCC-C---------CCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR---RAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTP-G---------LFDS   82 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~---~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTP-G---------~~~~   82 (259)
                      ...+|++-|+||+||||++..|.+.   ..+..+.   -.|..+.      .++  ..|.++|+. |         +...
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG---f~t~EVR------~gGkR~GF~Ivdl~tg~~~~la~~~~~~~   74 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG---FITPEVR------EGGKRIGFKIVDLATGEEGILARVGFSRP   74 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee---EEeeeee------cCCeEeeeEEEEccCCceEEEEEcCCCCc
Confidence            3468999999999999999887532   2111110   0111111      111  145566664 1         1111


Q ss_pred             C-----CChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985           83 S-----ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGN  148 (259)
Q Consensus        83 ~-----~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D  148 (259)
                      +     ..-+.+.+....++..+...+|++  ++|-=.+.......+.+.+.+.++.+  +|++.++.+-+
T Consensus        75 rvGkY~V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElks~~f~~~ve~vl~~~--kpliatlHrrs  141 (179)
T COG1618          75 RVGKYGVNVEGLEEIAIPALRRALEEADVI--IIDEIGPMELKSKKFREAVEEVLKSG--KPLIATLHRRS  141 (179)
T ss_pred             ccceEEeeHHHHHHHhHHHHHHHhhcCCEE--EEecccchhhccHHHHHHHHHHhcCC--CcEEEEEeccc
Confidence            1     112234445556666666667765  45532244444466777777777653  38777776554

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.56  E-value=8.1e-05  Score=59.95  Aligned_cols=27  Identities=30%  Similarity=0.336  Sum_probs=23.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-.|+++|+||||||||+|.|-+-..+
T Consensus        31 Ge~vaI~GpSGSGKSTLLniig~ld~p   57 (226)
T COG1136          31 GEFVAIVGPSGSGKSTLLNLLGGLDKP   57 (226)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccCC
Confidence            347999999999999999999877753

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.56  E-value=0.001  Score=56.91  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +.+..+|.|.-|||||||+|.++..
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          3 PIAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhc
Confidence            4567889999999999999999854

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.55  E-value=0.00034  Score=51.38  Aligned_cols=20  Identities=25%  Similarity=0.544  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q 024985           22 LVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        22 I~l~G~~g~GKSslin~l~~   41 (259)
                      |+|.|++|+|||++++.+..
T Consensus         1 ill~G~~G~GKT~l~~~la~   20 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQ   20 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHh
Confidence            68999999999999999973

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.55  E-value=0.00052  Score=53.67  Aligned_cols=26  Identities=31%  Similarity=0.466  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++++|++|+|||||++.|.|...
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (178)
T cd03229          26 GEIVALLGPSGSGKSTLLRCIAGLEE   51 (178)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35789999999999999999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.53  E-value=0.0014  Score=46.68  Aligned_cols=101  Identities=15%  Similarity=0.082  Sum_probs=51.7

Q ss_pred             EEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCC
Q 024985           24 LVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDG  103 (259)
Q Consensus        24 l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (259)
                      +-++.|+||||+.-.|...-....+     ..  ..........+..++++|||+....         .....+.    .
T Consensus         5 ~~~kgg~gkt~~~~~la~~~~~~~~-----~~--~~l~d~d~~~~~D~IIiDtpp~~~~---------~~~~~l~----~   64 (106)
T cd03111           5 IGAKGGVGATTLAANLAVALAKEAG-----RR--VLLVDLDLQFGDDYVVVDLGRSLDE---------VSLAALD----Q   64 (106)
T ss_pred             ECCCCCCcHHHHHHHHHHHHHhcCC-----Cc--EEEEECCCCCCCCEEEEeCCCCcCH---------HHHHHHH----H
Confidence            3467899999987666422210000     00  0111011112227899999986531         1122222    3


Q ss_pred             ccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeC
Q 024985          104 IHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTG  146 (259)
Q Consensus       104 ~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk  146 (259)
                      +|.++++++.+ ..+.. -..+++.+.+. +.+...++.+|+|+
T Consensus        65 aD~vlvvv~~~-~~s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr  106 (106)
T cd03111          65 ADRVFLVTQQD-LPSIRNAKRLLELLRVL-DYSLPAKIELVLNR  106 (106)
T ss_pred             cCeEEEEecCC-hHHHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence            48999999887 33332 34555555553 32212367777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.51  E-value=0.00012  Score=54.79  Aligned_cols=22  Identities=36%  Similarity=0.478  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC
Q 024985           22 LVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        22 I~l~G~~g~GKSslin~l~~~~   43 (259)
                      |+|+|++|+|||||++.|....
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~   23 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEF   23 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcC
Confidence            7899999999999999998763

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.50  E-value=0.0038  Score=48.41  Aligned_cols=64  Identities=20%  Similarity=0.156  Sum_probs=37.8

Q ss_pred             EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985           70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGN  148 (259)
Q Consensus        70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D  148 (259)
                      .++|||||+....         .....+    ..+|.+|++++.+ ..+... ..+++.+... +   .....+|+|+++
T Consensus        64 d~viiD~p~~~~~---------~~~~~l----~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~-~---~~~~~iv~N~~~  125 (179)
T cd02036          64 DYILIDSPAGIER---------GFITAI----APADEALLVTTPE-ISSLRDADRVKGLLEAL-G---IKVVGVIVNRVR  125 (179)
T ss_pred             CEEEEECCCCCcH---------HHHHHH----HhCCcEEEEeCCC-cchHHHHHHHHHHHHHc-C---CceEEEEEeCCc
Confidence            7999999984421         112222    2448899999887 333322 3445555441 2   136778999988


Q ss_pred             CCC
Q 024985          149 ELE  151 (259)
Q Consensus       149 ~~~  151 (259)
                      ...
T Consensus       126 ~~~  128 (179)
T cd02036         126 PDM  128 (179)
T ss_pred             ccc
Confidence            643

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.50  E-value=0.00015  Score=58.16  Aligned_cols=35  Identities=23%  Similarity=0.297  Sum_probs=26.1

Q ss_pred             CCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985            8 VDSMPTSPSNAERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus         8 ~~~~~~s~~~~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      +.|....+. ....|+|+|++|||||||++.|....
T Consensus         3 ~~~~~~~~~-~~~~ivi~GpsG~GK~tl~~~L~~~~   37 (206)
T PRK14738          3 NPWLFNKPA-KPLLVVISGPSGVGKDAVLARMRERK   37 (206)
T ss_pred             CccccCCCC-CCeEEEEECcCCCCHHHHHHHHHhcC
Confidence            456544433 45678889999999999999997543

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=97.50  E-value=0.0012  Score=59.35  Aligned_cols=121  Identities=18%  Similarity=0.116  Sum_probs=67.3

Q ss_pred             CCCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcce-eeEEEEEEe-eCCcEEEEEeCCCCCCCCCChHHHH
Q 024985           13 TSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTK-TCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVS   90 (259)
Q Consensus        13 ~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~-~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~~~   90 (259)
                      .....+...+.++|+.++|||.++++++|...-.   +..+.+. ......+.. ....-+++-|.+-. +...      
T Consensus       419 ~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~---~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~------  488 (625)
T KOG1707|consen  419 KQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSD---NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDF------  488 (625)
T ss_pred             ccccceeeeEEEEcCCcCchHHHHHHHhcccccc---ccccCCCCceeeeeeeeccccceEEEeecCcc-cccc------
Confidence            3444566889999999999999999999987633   1111111 111111111 12234555554432 1000      


Q ss_pred             HHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           91 KEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                            +..-...+|++++++|.+++-+..   .+..+.+.+......|+++|.+|+|+.+.
T Consensus       489 ------l~~ke~~cDv~~~~YDsS~p~sf~---~~a~v~~~~~~~~~~Pc~~va~K~dlDe~  541 (625)
T KOG1707|consen  489 ------LTSKEAACDVACLVYDSSNPRSFE---YLAEVYNKYFDLYKIPCLMVATKADLDEV  541 (625)
T ss_pred             ------ccCccceeeeEEEecccCCchHHH---HHHHHHHHhhhccCCceEEEeeccccchh
Confidence                  000012459999999988443333   33333332322344599999999997654

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.49  E-value=0.00012  Score=58.10  Aligned_cols=31  Identities=26%  Similarity=0.374  Sum_probs=25.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccccc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSK   48 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~   48 (259)
                      ..-.++++|+||||||||+..|-+-+.+.++
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G   57 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG   57 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCcCCCCc
Confidence            3458999999999999999999887764443

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.48  E-value=0.0029  Score=47.69  Aligned_cols=26  Identities=38%  Similarity=0.474  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++++|++|+|||||++.|.|...
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (144)
T cd03221          26 GDRIGLVGRNGAGKSTLLKLIAGELE   51 (144)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            35789999999999999999998764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.46  E-value=0.00013  Score=46.29  Aligned_cols=20  Identities=30%  Similarity=0.494  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~   40 (259)
                      ..+|.|++|+||||++.+|.
T Consensus        25 ~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999874

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.46  E-value=7.2e-05  Score=57.96  Aligned_cols=53  Identities=23%  Similarity=0.226  Sum_probs=33.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEe
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVID   75 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liD   75 (259)
                      ...-++|.||||||||||++.|+....+..  +-..+|+.+...   ..+|..+.|++
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~--SVS~TTR~pR~g---Ev~G~dY~Fvs   55 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRF--SVSATTRKPRPG---EVDGVDYFFVT   55 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcCeEE--EEEeccCCCCCC---CcCCceeEeCC
Confidence            345688999999999999999997773222  212233333322   24566666665

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.44  E-value=0.00016  Score=57.00  Aligned_cols=26  Identities=19%  Similarity=0.401  Sum_probs=22.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ...-|+|+|++|||||||++.|+...
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            45679999999999999999998764

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.41  E-value=0.00012  Score=54.39  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=23.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-.++|+|++|+|||||++.|+|...+
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~~~   37 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLLPP   37 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred             CCEEEEEccCCCccccceeeecccccc
Confidence            347999999999999999999988753

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=97.41  E-value=0.0023  Score=56.12  Aligned_cols=27  Identities=26%  Similarity=0.425  Sum_probs=23.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFK   46 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~   46 (259)
                      -+|++||+.|+|||||+..|+|.--+.
T Consensus       614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~  640 (807)
T KOG0066|consen  614 SRIAIVGPNGVGKSTLLKLLIGKLDPN  640 (807)
T ss_pred             ceeEEECCCCccHHHHHHHHhcCCCCC
Confidence            389999999999999999999876433

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.40  E-value=0.0012  Score=45.50  Aligned_cols=68  Identities=24%  Similarity=0.273  Sum_probs=41.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcC
Q 024985           22 LVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAK  101 (259)
Q Consensus        22 I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~  101 (259)
                      +++.|..|+||||+...+...-.   .   .+ . ....     .+  .+.++|+||..+...       ..   .....
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~---~---~g-~-~v~~-----~~--d~iivD~~~~~~~~~-------~~---~~~~~   56 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALA---K---RG-K-RVLL-----ID--DYVLIDTPPGLGLLV-------LL---CLLAL   56 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH---H---CC-C-eEEE-----EC--CEEEEeCCCCccchh-------hh---hhhhh
Confidence            67889999999999988863321   0   00 0 0111     11  688999999654211       00   11123


Q ss_pred             CCccEEEEEEeCC
Q 024985          102 DGIHAVLLVFSVR  114 (259)
Q Consensus       102 ~~~~~il~v~d~~  114 (259)
                      ..+|.++++++..
T Consensus        57 ~~~~~vi~v~~~~   69 (99)
T cd01983          57 LAADLVIIVTTPE   69 (99)
T ss_pred             hhCCEEEEecCCc
Confidence            3558888998876

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.38  E-value=0.00014  Score=62.07  Aligned_cols=29  Identities=34%  Similarity=0.369  Sum_probs=24.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCccccc
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSK   48 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~   48 (259)
                      -.++|+||||||||||++.|.|-+.+.++
T Consensus        30 ef~vllGPSGcGKSTlLr~IAGLe~~~~G   58 (338)
T COG3839          30 EFVVLLGPSGCGKSTLLRMIAGLEEPTSG   58 (338)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            46888999999999999999998764443

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.38  E-value=0.00015  Score=60.19  Aligned_cols=167  Identities=15%  Similarity=0.189  Sum_probs=86.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc--ccccCCCCCccee----------------------------------eEEE
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA--FKSKAGSSGVTKT----------------------------------CEMQ   61 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~--~~~~~~~~~~T~~----------------------------------~~~~   61 (259)
                      ...+|.-+|....||||+..++.|-.-  |..... ...|..                                  |...
T Consensus        37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELE-RNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~  115 (466)
T KOG0466|consen   37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELE-RNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP  115 (466)
T ss_pred             eeeeecceeccccCcceeeeeeccceEEEehhhhh-cceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence            468999999999999999999976431  111100 001111                                  0000


Q ss_pred             EEE--eeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccC
Q 024985           62 RTM--LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFD  138 (259)
Q Consensus        62 ~~~--~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~  138 (259)
                      ...  ..--+.+.|+|+||..           -+...+.....-.|+.++++.++ ....++..+-|..+.=+    ..+
T Consensus       116 g~~~~~klvRHVSfVDCPGHD-----------iLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM----~Lk  180 (466)
T KOG0466|consen  116 GCEGKMKLVRHVSFVDCPGHD-----------ILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM----KLK  180 (466)
T ss_pred             CCCCceEEEEEEEeccCCchH-----------HHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh----hhc
Confidence            000  0001358999999943           22222222222337888888776 23333433333332211    114


Q ss_pred             eEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc---CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985          139 YMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC---ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG  213 (259)
Q Consensus       139 ~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~  213 (259)
                      .++++-||+|++.+. +.++++.      .+..++...   +.++...++      +.+-++.-+.++|-+.++..-+
T Consensus       181 hiiilQNKiDli~e~-~A~eq~e------~I~kFi~~t~ae~aPiiPisA------QlkyNId~v~eyivkkIPvPvR  245 (466)
T KOG0466|consen  181 HIIILQNKIDLIKES-QALEQHE------QIQKFIQGTVAEGAPIIPISA------QLKYNIDVVCEYIVKKIPVPVR  245 (466)
T ss_pred             eEEEEechhhhhhHH-HHHHHHH------HHHHHHhccccCCCceeeehh------hhccChHHHHHHHHhcCCCCcc
Confidence            899999999998652 2233221      222332221   113333333      3346788888888887765433

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.36  E-value=7.3e-05  Score=62.95  Aligned_cols=25  Identities=36%  Similarity=0.501  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ....|+|+|++||||||++..|...
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~  217 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAAR  217 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999988643

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.35  E-value=0.0014  Score=56.62  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      .+..+|.|.-|||||||+|.++..
T Consensus         4 ipv~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         4 IPVTIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             cCEEEEEECCCCCHHHHHHHHHhc
Confidence            467888999999999999999753

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.33  E-value=0.0035  Score=48.73  Aligned_cols=26  Identities=31%  Similarity=0.372  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++++|++|+|||||++.|.|...
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (173)
T cd03230          26 GEIYGLLGPNGAGKTTLIKIILGLLK   51 (173)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45799999999999999999998764

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=97.33  E-value=0.00034  Score=59.74  Aligned_cols=67  Identities=16%  Similarity=0.112  Sum_probs=41.4

Q ss_pred             EEEEEeCCCCCCCCCChHHHHHHHHHH--HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985           70 VVNVIDTPGLFDSSADSEFVSKEIVKC--IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG  147 (259)
Q Consensus        70 ~~~liDTPG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~  147 (259)
                      -+.|||..|..           .+.+.  +-..-.-+|...+++-++.++-...++-|..... +.    .|+++|+||+
T Consensus       220 viTFIDLAGHE-----------kYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALa-L~----VPVfvVVTKI  283 (641)
T KOG0463|consen  220 VITFIDLAGHE-----------KYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALA-LH----VPVFVVVTKI  283 (641)
T ss_pred             eEEEEeccchh-----------hhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhh-hc----CcEEEEEEee
Confidence            48899999943           12111  1122334577788887776655555555554333 23    3999999999


Q ss_pred             CCCCC
Q 024985          148 NELED  152 (259)
Q Consensus       148 D~~~~  152 (259)
                      |..+.
T Consensus       284 DMCPA  288 (641)
T KOG0463|consen  284 DMCPA  288 (641)
T ss_pred             ccCcH
Confidence            97654

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.32  E-value=0.0014  Score=57.11  Aligned_cols=97  Identities=12%  Similarity=0.144  Sum_probs=54.7

Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985           92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE  171 (259)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (259)
                      .+...+......++++++|+|+.+....    +...+.+..+   .+|+++|+||+|+++.. ...+. +.    ..++.
T Consensus        52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s----~~~~l~~~~~---~~piilV~NK~DLl~k~-~~~~~-~~----~~l~~  118 (360)
T TIGR03597        52 DFLNLLNSLGDSNALIVYVVDIFDFEGS----LIPELKRFVG---GNPVLLVGNKIDLLPKS-VNLSK-IK----EWMKK  118 (360)
T ss_pred             HHHHHHhhcccCCcEEEEEEECcCCCCC----ccHHHHHHhC---CCCEEEEEEchhhCCCC-CCHHH-HH----HHHHH
Confidence            4455555566788999999998633222    2333444333   24999999999987541 11111 11    12223


Q ss_pred             HHHHcCC---cEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          172 ILQLCEN---RRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       172 ~~~~~~~---~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      ..+..+.   .++..++.  .    ..++.+|++.+.+.
T Consensus       119 ~~k~~g~~~~~i~~vSAk--~----g~gv~eL~~~l~~~  151 (360)
T TIGR03597       119 RAKELGLKPVDIILVSAK--K----GNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHcCCCcCcEEEecCC--C----CCCHHHHHHHHHHH
Confidence            3444343   23333332  2    26899999988765

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.31  E-value=0.00026  Score=55.35  Aligned_cols=27  Identities=22%  Similarity=0.415  Sum_probs=23.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++++|++|+|||||++.|.|...
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            445899999999999999999998764

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK12289 GTPase RsgA; Reviewed

Probab=97.31  E-value=0.00095  Score=57.83  Aligned_cols=48  Identities=10%  Similarity=0.068  Sum_probs=29.6

Q ss_pred             CCCccEEEEEEeCCCC-CCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          101 KDGIHAVLLVFSVRNR-FSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ...+|.+++|+|+.++ +...  .+-+++.....  ...|+++|+||+|+...
T Consensus        87 ~aNvD~vLlV~d~~~p~~~~~--~LdR~L~~a~~--~~ip~ILVlNK~DLv~~  135 (352)
T PRK12289         87 VANADQILLVFALAEPPLDPW--QLSRFLVKAES--TGLEIVLCLNKADLVSP  135 (352)
T ss_pred             hhcCCEEEEEEECCCCCCCHH--HHHHHHHHHHH--CCCCEEEEEEchhcCCh
Confidence            4567999999999733 2332  12222222111  12499999999999754

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=97.29  E-value=0.0013  Score=60.04  Aligned_cols=31  Identities=32%  Similarity=0.376  Sum_probs=26.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccccc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSK   48 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~   48 (259)
                      +.-+|.|||+.|+|||||++.|.|...+..+
T Consensus        28 ~G~riGLvG~NGaGKSTLLkilaG~~~~~~G   58 (530)
T COG0488          28 PGERIGLVGRNGAGKSTLLKILAGELEPDSG   58 (530)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCcCCCC
Confidence            4569999999999999999999998864443

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.28  E-value=0.00022  Score=51.78  Aligned_cols=22  Identities=27%  Similarity=0.596  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 024985           21 TLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~   42 (259)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999743

...

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.25  E-value=0.00046  Score=61.07  Aligned_cols=118  Identities=19%  Similarity=0.242  Sum_probs=70.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC--------------CCCcceeeEEEEEE---------------eeC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG--------------SSGVTKTCEMQRTM---------------LKD   67 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~--------------~~~~T~~~~~~~~~---------------~~~   67 (259)
                      .+.+++.++.....|||||..+|.-.....+...              ..+.|.........               ..+
T Consensus        17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~   96 (842)
T KOG0469|consen   17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN   96 (842)
T ss_pred             cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence            3567889999999999999999875543222111              01222222111100               011


Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG  147 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~  147 (259)
                      +--+++||.||.-+.+.       ++..    +.+-.|+.|.|+|.-++.+-+....|.......-     .-++|+||+
T Consensus        97 ~FLiNLIDSPGHVDFSS-------EVTA----ALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERI-----kPvlv~NK~  160 (842)
T KOG0469|consen   97 GFLINLIDSPGHVDFSS-------EVTA----ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERI-----KPVLVMNKM  160 (842)
T ss_pred             ceeEEeccCCCcccchh-------hhhh----eeEeccCcEEEEEccCceEechHHHHHHHHHhhc-----cceEEeehh
Confidence            22589999999876432       3332    3344488899999776877777666664322122     335788999


Q ss_pred             CCC
Q 024985          148 NEL  150 (259)
Q Consensus       148 D~~  150 (259)
                      |..
T Consensus       161 DRA  163 (842)
T KOG0469|consen  161 DRA  163 (842)
T ss_pred             hHH
Confidence            974

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.22  E-value=0.0045  Score=43.63  Aligned_cols=70  Identities=19%  Similarity=0.216  Sum_probs=38.9

Q ss_pred             EEEEc-CCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           22 LVLVG-RTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        22 I~l~G-~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      |++.| ..|+||||+.-.+...-.  .    .+ . ..-..  .......++++|||+....         .....+.  
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~--~----~~-~-~vl~~--d~d~~~d~viiD~p~~~~~---------~~~~~l~--   60 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALA--R----RG-K-RVLLI--DLDPQYDYIIIDTPPSLGL---------LTRNALA--   60 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHH--h----CC-C-cEEEE--eCCCCCCEEEEeCcCCCCH---------HHHHHHH--
Confidence            56666 679999998866642221  0    00 0 01111  1111256899999996531         1222222  


Q ss_pred             CCCccEEEEEEeCC
Q 024985          101 KDGIHAVLLVFSVR  114 (259)
Q Consensus       101 ~~~~~~il~v~d~~  114 (259)
                        .+|.++++++.+
T Consensus        61 --~ad~viv~~~~~   72 (104)
T cd02042          61 --AADLVLIPVQPS   72 (104)
T ss_pred             --HCCEEEEeccCC
Confidence              248999999876

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.22  E-value=0.00037  Score=55.95  Aligned_cols=27  Identities=26%  Similarity=0.348  Sum_probs=23.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~   52 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            345799999999999999999998764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.20  E-value=0.00039  Score=56.88  Aligned_cols=26  Identities=31%  Similarity=0.465  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (235)
T cd03261          26 GEILAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45799999999999999999998764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01069 mutS2 MutS2 family protein

Probab=97.18  E-value=0.0033  Score=60.13  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ...++|.|+.|+|||||++.+.+.
T Consensus       322 ~~~liItGpNg~GKSTlLK~i~~~  345 (771)
T TIGR01069       322 KRVLAITGPNTGGKTVTLKTLGLL  345 (771)
T ss_pred             ceEEEEECCCCCCchHHHHHHHHH
Confidence            368999999999999999999876

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.18  E-value=0.00031  Score=54.71  Aligned_cols=28  Identities=29%  Similarity=0.360  Sum_probs=23.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKS   47 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~   47 (259)
                      -.+.++|+||||||||++.|++...+..
T Consensus        29 ef~fl~GpSGAGKSTllkLi~~~e~pt~   56 (223)
T COG2884          29 EFVFLTGPSGAGKSTLLKLIYGEERPTR   56 (223)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhhcCCC
Confidence            4688999999999999999998876443

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.18  E-value=0.0033  Score=46.44  Aligned_cols=26  Identities=27%  Similarity=0.494  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ....+++.|++|+|||++++.+.+..
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            34579999999999999999998554

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.17  E-value=0.00043  Score=55.84  Aligned_cols=27  Identities=37%  Similarity=0.492  Sum_probs=23.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++++|++|+|||||++.|.|...
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345799999999999999999998754

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.16  E-value=0.00037  Score=54.41  Aligned_cols=24  Identities=33%  Similarity=0.342  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      +.-.++|+|++|+|||||++.+++
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhh
Confidence            345899999999999999999974

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.16  E-value=0.00048  Score=53.09  Aligned_cols=27  Identities=26%  Similarity=0.329  Sum_probs=23.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~   51 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLYK   51 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345899999999999999999998764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.16  E-value=0.00044  Score=49.08  Aligned_cols=22  Identities=18%  Similarity=0.447  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...++++|++|+|||||++.+.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            4579999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.16  E-value=0.00046  Score=55.54  Aligned_cols=26  Identities=27%  Similarity=0.400  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        28 G~~~~l~G~nGsGKSTLl~~i~Gl~~   53 (214)
T TIGR02673        28 GEFLFLTGPSGAGKTTLLKLLYGALT   53 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45799999999999999999998754

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.15  E-value=0.00034  Score=55.12  Aligned_cols=25  Identities=28%  Similarity=0.513  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ...++++|++|||||||+++|++.-
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4689999999999999999998754

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.15  E-value=0.00046  Score=55.75  Aligned_cols=26  Identities=31%  Similarity=0.399  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        30 G~~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          30 GEFVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence            45799999999999999999998764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.15  E-value=0.00046  Score=55.19  Aligned_cols=27  Identities=26%  Similarity=0.466  Sum_probs=23.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            345899999999999999999998764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.15  E-value=0.00043  Score=55.64  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .++++|++|+|||||++.|.|...
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~   50 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTP   50 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCC
Confidence            899999999999999999998754

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.14  E-value=0.00049  Score=55.67  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~i~G~~~   51 (220)
T cd03265          26 GEIFGLLGPNGAGKTTTIKMLTTLLK   51 (220)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45789999999999999999998754

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.13  E-value=0.00052  Score=54.22  Aligned_cols=26  Identities=31%  Similarity=0.353  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        18 Ge~~~i~G~nGsGKSTLl~~i~G~~~   43 (190)
T TIGR01166        18 GEVLALLGANGAGKSTLLLHLNGLLR   43 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34799999999999999999998764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.13  E-value=0.0005  Score=55.43  Aligned_cols=26  Identities=19%  Similarity=0.355  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~   38 (213)
T PRK15177         13 HEHIGILAAPGSGKTTLTRLLCGLDA   38 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            35799999999999999999998764

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.13  E-value=0.00052  Score=55.53  Aligned_cols=27  Identities=26%  Similarity=0.375  Sum_probs=23.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345799999999999999999998764

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.12  E-value=0.00053  Score=55.18  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03259          26 GEFLALLGPSGCGKTTLLRLIAGLER   51 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45799999999999999999998754

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.11  E-value=0.00052  Score=55.21  Aligned_cols=27  Identities=33%  Similarity=0.380  Sum_probs=23.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            345789999999999999999998754

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.11  E-value=0.00055  Score=55.34  Aligned_cols=26  Identities=27%  Similarity=0.419  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263          28 GEIFGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            44799999999999999999998764

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.10  E-value=0.00051  Score=55.57  Aligned_cols=26  Identities=35%  Similarity=0.400  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        30 G~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (220)
T cd03293          30 GEFVALVGPSGCGKSTLLRIIAGLER   55 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35799999999999999999998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.10  E-value=0.00058  Score=54.91  Aligned_cols=27  Identities=26%  Similarity=0.336  Sum_probs=23.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLEE   51 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345799999999999999999998764

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.10  E-value=0.00057  Score=54.88  Aligned_cols=26  Identities=35%  Similarity=0.429  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          26 GEIFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45789999999999999999998754

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.10  E-value=0.00058  Score=55.27  Aligned_cols=27  Identities=30%  Similarity=0.527  Sum_probs=23.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345899999999999999999998764

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.10  E-value=0.00057  Score=54.99  Aligned_cols=27  Identities=37%  Similarity=0.484  Sum_probs=23.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   50 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLLK   50 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            345799999999999999999998764

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.09  E-value=0.00059  Score=54.39  Aligned_cols=27  Identities=33%  Similarity=0.327  Sum_probs=23.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~   52 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGLLN   52 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            446899999999999999999998764

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.09  E-value=0.00056  Score=56.21  Aligned_cols=26  Identities=23%  Similarity=0.281  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        28 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   53 (243)
T TIGR02315        28 GEFVAIIGPSGAGKSTLLRCINRLVE   53 (243)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            45799999999999999999998764

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.09  E-value=0.00053  Score=53.73  Aligned_cols=26  Identities=31%  Similarity=0.371  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      -.++++|+||+|||||+|.+.|.-.+
T Consensus        32 e~vv~lGpSGcGKTTLLnl~AGf~~P   57 (259)
T COG4525          32 ELVVVLGPSGCGKTTLLNLIAGFVTP   57 (259)
T ss_pred             CEEEEEcCCCccHHHHHHHHhcCcCc
Confidence            46888999999999999999987653

>KOG4181 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=0.0047  Score=52.42  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=22.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      .-..|.++|.-|+|||||++.|.+..
T Consensus       187 df~VIgvlG~QgsGKStllslLaans  212 (491)
T KOG4181|consen  187 DFTVIGVLGGQGSGKSTLLSLLAANS  212 (491)
T ss_pred             CeeEEEeecCCCccHHHHHHHHhccC
Confidence            45689999999999999999998764

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.07  E-value=0.00046  Score=54.38  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 024985           21 TLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      .|+|+|++|||||||++.|.+..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            68999999999999999997654

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.07  E-value=0.00062  Score=56.48  Aligned_cols=26  Identities=35%  Similarity=0.433  Sum_probs=23.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (255)
T PRK11248         27 GELLVVLGPSGCGKTTLLNLIAGFVP   52 (255)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45799999999999999999998764

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.07  E-value=0.0006  Score=54.51  Aligned_cols=26  Identities=27%  Similarity=0.324  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        24 Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        24 GKMYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            35799999999999999999998754

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.07  E-value=0.0005  Score=59.26  Aligned_cols=120  Identities=20%  Similarity=0.240  Sum_probs=71.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccccc-----------------------------CCCCCcceeeEEEEEEeeC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK-----------------------------AGSSGVTKTCEMQRTMLKD   67 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~-----------------------------~~~~~~T~~~~~~~~~~~~   67 (259)
                      ....+++++|...+||||+-..|+....+...                             ....+-|.......++ ..
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE-te  155 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE-TE  155 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE-ec
Confidence            45689999999999999998887643211110                             0011344444443333 45


Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC-----CCCCHh-HHHHHHHHHHHhcccccCeEE
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR-----NRFSEE-GGAAIHSLESLFGKKVFDYMI  141 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~-----~~~~~~-~~~~l~~l~~~~~~~~~~~~i  141 (259)
                      .+.+.+.|+||.-.           +...+.....++|+-++|+.+.     .++... ..+--..|.+..|.   +..|
T Consensus       156 ~~~ftiLDApGHk~-----------fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv---~~lV  221 (501)
T KOG0459|consen  156 NKRFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV---KHLI  221 (501)
T ss_pred             ceeEEeeccCcccc-----------cchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc---ceEE
Confidence            67899999999543           2222233455778888888874     122211 11122233443443   4899


Q ss_pred             EEEeCCCCCC
Q 024985          142 VVFTGGNELE  151 (259)
Q Consensus       142 vV~nk~D~~~  151 (259)
                      +++||+|...
T Consensus       222 v~vNKMddPt  231 (501)
T KOG0459|consen  222 VLINKMDDPT  231 (501)
T ss_pred             EEEEeccCCc
Confidence            9999999764

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.07  E-value=0.00065  Score=53.93  Aligned_cols=26  Identities=27%  Similarity=0.263  Sum_probs=23.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (195)
T PRK13541         26 SAITYIKGANGCGKSSLLRMIAGIMQ   51 (195)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45899999999999999999999764

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.06  E-value=0.00063  Score=55.26  Aligned_cols=26  Identities=46%  Similarity=0.631  Sum_probs=23.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~G~~~   56 (228)
T cd03257          31 GETLGLVGESGSGKSTLARAILGLLK   56 (228)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45899999999999999999998764

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.06  E-value=0.00062  Score=55.73  Aligned_cols=27  Identities=22%  Similarity=0.241  Sum_probs=23.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLYV   52 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            345899999999999999999998764

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.06  E-value=0.00065  Score=55.44  Aligned_cols=27  Identities=30%  Similarity=0.429  Sum_probs=23.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345899999999999999999998764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.06  E-value=0.0007  Score=53.01  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=23.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~~   50 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLLK   50 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345899999999999999999998754

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.06  E-value=0.00068  Score=53.21  Aligned_cols=26  Identities=23%  Similarity=0.516  Sum_probs=23.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++++|++|+|||||++.|.|...
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (182)
T cd03215          26 GEIVGIAGLVGNGQTELAEALFGLRP   51 (182)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35799999999999999999999865

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.06  E-value=0.0039  Score=51.42  Aligned_cols=48  Identities=19%  Similarity=0.052  Sum_probs=31.5

Q ss_pred             cCCCccEEEEEEeCCCCC-CHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          100 AKDGIHAVLLVFSVRNRF-SEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      .+..+|.+++|+|++++. +... ..++..+..     ...|+++|+||+|+.+.
T Consensus        33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-----~~i~~vIV~NK~DL~~~   82 (245)
T TIGR00157        33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-----QNIEPIIVLNKIDLLDD   82 (245)
T ss_pred             ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEECcccCCC
Confidence            466889999999998433 4332 233333322     12499999999998754

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.05  E-value=0.00067  Score=55.33  Aligned_cols=26  Identities=31%  Similarity=0.386  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (232)
T cd03218          26 GEIVGLLGPNGAGKTTTFYMIVGLVK   51 (232)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45799999999999999999998764

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=97.05  E-value=0.00057  Score=55.55  Aligned_cols=26  Identities=23%  Similarity=0.239  Sum_probs=23.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      +.-.++|+|++|+|||||++.|.|..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34579999999999999999999876

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.05  E-value=0.021  Score=52.19  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      ...++|.||+|+||||++..|...-.
T Consensus        45 ~~iLlLtGP~G~GKtttv~~La~elg   70 (519)
T PF03215_consen   45 KRILLLTGPSGCGKTTTVKVLAKELG   70 (519)
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhC
Confidence            34678899999999999999976543

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=97.05  E-value=0.00072  Score=53.79  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=23.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (198)
T TIGR01189        25 AGEALQVTGPNGIGKTTLLRILAGLLR   51 (198)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345899999999999999999999764

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.04  E-value=0.00071  Score=54.24  Aligned_cols=27  Identities=37%  Similarity=0.463  Sum_probs=23.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++++|++|+|||||++.|.|...
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (207)
T PRK13539         27 AGEALVLTGPNGSGKTTLLRLIAGLLP   53 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345899999999999999999999764

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.04  E-value=0.0007  Score=54.44  Aligned_cols=26  Identities=35%  Similarity=0.474  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03301          26 GEFVVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45789999999999999999998764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=97.04  E-value=0.00059  Score=62.66  Aligned_cols=29  Identities=21%  Similarity=0.243  Sum_probs=25.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFK   46 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~   46 (259)
                      +.-+++++|++|+|||||++.|+|...+.
T Consensus       360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~  388 (529)
T TIGR02868       360 PGERVAILGPSGSGKSTLLMLLTGLLDPL  388 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            45689999999999999999999887533

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK07261 topology modulation protein; Provisional

Probab=97.03  E-value=0.00052  Score=53.36  Aligned_cols=22  Identities=23%  Similarity=0.534  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 024985           21 TLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +|+++|.+|+|||||...|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6999999999999999998643

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.03  E-value=0.00068  Score=55.42  Aligned_cols=26  Identities=31%  Similarity=0.296  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (236)
T cd03219          26 GEIHGLIGPNGAGKTTLFNLISGFLR   51 (236)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcCCCC
Confidence            45799999999999999999998754

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK10908 cell division protein FtsE; Provisional

Probab=97.03  E-value=0.00072  Score=54.80  Aligned_cols=27  Identities=30%  Similarity=0.363  Sum_probs=23.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICGIER   53 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345899999999999999999998764

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.03  E-value=0.00055  Score=54.95  Aligned_cols=26  Identities=19%  Similarity=0.415  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      .....|++.|++|||||||.+.|.+.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45689999999999999999999754

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=97.03  E-value=0.00074  Score=53.87  Aligned_cols=27  Identities=26%  Similarity=0.389  Sum_probs=23.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (201)
T cd03231          25 AGEALQVTGPNGSGKTTLLRILAGLSP   51 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999998764

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.03  E-value=0.00069  Score=55.33  Aligned_cols=26  Identities=27%  Similarity=0.419  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        35 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   60 (233)
T PRK11629         35 GEMMAIVGSSGSGKSTLLHLLGGLDT   60 (233)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34799999999999999999998754

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=97.03  E-value=0.00072  Score=56.09  Aligned_cols=29  Identities=31%  Similarity=0.368  Sum_probs=25.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFK   46 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~   46 (259)
                      +.-.++|+|++|+|||||++.|+|...+.
T Consensus        25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~   53 (255)
T cd03236          25 EGQVLGLVGPNGIGKSTALKILAGKLKPN   53 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence            45689999999999999999999987533

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.02  E-value=0.00074  Score=55.46  Aligned_cols=27  Identities=26%  Similarity=0.380  Sum_probs=23.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   54 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVGIVP   54 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345899999999999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	259
3lxx_A	239	Crystal Structure Of Human Gtpase Imap Family Membe		2e-28
3v70_A	247	Crystal Structure Of Human Gtpase Imap Family Membe		1e-25
2xtm_A	234	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		2e-24
3p1j_A	209	Crystal Structure Of Human Gtpase Imap Family Membe		2e-24
2xto_A	240	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		4e-24
2xtp_A	260	Crystal Structure Of Nucleotide-Free Human Gimap2,		1e-22
3bb4_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		2e-04
3bb3_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		2e-04
3def_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		4e-04
2j3e_A	249	Dimerization Is Important For The Gtpase Activity O		4e-04

>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4 Length = 239

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 116/207 (56%), Gaps = 6/207 (2%)
Query: 15  PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVI 74
           P N++  +VLVG+TG GKSATGNSILGR+ F S   +  +TK CE + +  K+ ++V V+
Sbjct: 25  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 75  DTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK 134
           DTPG+FD+   +   SKEI++CI +   G HA+LLV  +  R++EE   A   +   FG+
Sbjct: 84  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKXFGE 142
Query: 135 KVFDYMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRT 194
           +   + I++FT              YL  E P+ ++++  +  +R    +NK    A + 
Sbjct: 143 RARSFXILIFT--RKDDLGDTNLHDYL-REAPEDIQDLXDIFGDRYCALNNKAT-GAEQE 198
Query: 195 EQVGKLISLVNSVILENGGQPYSDEIF 221
            Q  +L+ L+  V+ EN    Y++  +
Sbjct: 199 AQRAQLLGLIQRVVRENKEGCYTNRXY 225

>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1 Length = 247

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 112/203 (55%), Gaps = 6/203 (2%)
Query: 20  RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79
           R L+LVGRTG GKSATGNSILG+R F S+ G++ VT+ C    +   D   V V+DTP +
Sbjct: 22  RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTG-SRRWDKCHVEVVDTPDI 80
Query: 80  FDSS-ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFD 138
           F S  + ++   +E   C  ++  G HA+LLV  +  RF+ +   A+  +  +FG+ V  
Sbjct: 81  FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVLK 139
Query: 139 YMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVG 198
           +M++VFT              Y+     + L+E++  C  R   FDN+      +  QV 
Sbjct: 140 WMVIVFT--RKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRAT-GREQEAQVV 196
Query: 199 KLISLVNSVILENGGQPYSDEIF 221
           +L+ +V  ++LE+ G  YS+E++
Sbjct: 197 QLLGMVEGLVLEHKGAHYSNEVY 219

>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 1-234 Length = 234

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 116/211 (54%), Gaps = 5/211 (2%)
Query: 16  SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVID 75
           S +E  ++LVG+TG GKSA GNSIL ++AF+SK GS  +TKTC   +    + ++V +ID
Sbjct: 19  SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 77
Query: 76  TPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK 135
           TP +F      E + KE+ +C  ++  G H +LLV  +  R++ +   A   ++ +FG+ 
Sbjct: 78  TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGED 136
Query: 136 VFDYMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTE 195
              + IV+FT              Y+     K L +++  C  R   F+N+  + + + +
Sbjct: 137 AMGHTIVLFT--HKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDD 193
Query: 196 QVGKLISLVNSVILENGGQPYSDEIFAELKK 226
           QV +L+  +  +++E  G  Y++ +++ +++
Sbjct: 194 QVKELMDCIEDLLMEKNGDHYTNGLYSLIQR 224

>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In The Nucleotide-Free State Length = 209

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 116/211 (54%), Gaps = 5/211 (2%)
Query: 16  SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVID 75
           S +E  ++LVG+TG GKSA GNSIL ++AF+SK GS  +TKTC   +    + ++V +ID
Sbjct: 2   SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 76  TPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK 135
           TP +F      E + KE+ +C  ++  G H +LLV  +  R++ +   A   ++ +FG+ 
Sbjct: 61  TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGED 119
Query: 136 VFDYMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTE 195
              + IV+FT              Y+     K L +++  C  R   F+N+  + + + +
Sbjct: 120 AMGHTIVLFT--HKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDD 176
Query: 196 QVGKLISLVNSVILENGGQPYSDEIFAELKK 226
           QV +L+  +  +++E  G  Y++ +++ +++
Sbjct: 177 QVKELMDCIEDLLMEKNGDHYTNGLYSLIQR 207

>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 21-260 Length = 240

Iteration: 1
 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 115/209 (55%), Gaps = 5/209 (2%)
Query: 18  AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTP 77
           +E  ++LVG+TG GKSA GNSIL ++AF+SK GS  +TKTC   +    + ++V +IDTP
Sbjct: 1   SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTP 59
Query: 78  GLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVF 137
            +F      E + KE+ +C  ++  G H +LLV  +  R++ +   A   ++ +FG+   
Sbjct: 60  DMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAM 118
Query: 138 DYMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQV 197
            + IV+FT              Y+     K L +++  C  R   F+N+  + + + +QV
Sbjct: 119 GHTIVLFT--HKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDDQV 175
Query: 198 GKLISLVNSVILENGGQPYSDEIFAELKK 226
            +L+  +  +++E  G  Y++ +++ +++
Sbjct: 176 KELMDCIEDLLMEKNGDHYTNGLYSLIQR 204

>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino Acid Residues 1-260 Length = 260

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 113/211 (53%), Gaps = 5/211 (2%)
Query: 16  SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVID 75
           S +E  ++LVG+TG GKSA GNSIL ++AF+SK GS  +TKTC   +    + ++V +ID
Sbjct: 19  SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 77
Query: 76  TPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK 135
           TP  F      E + KE+ +C  ++  G H +LLV  +  R++ +   A   ++ +FG+ 
Sbjct: 78  TPDXFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGED 136
Query: 136 VFDYMIVVFTGGXXXXXXXXXXXXYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTE 195
              + IV+FT              Y      K L +++  C  R   F+N+  + + + +
Sbjct: 137 AXGHTIVLFT--HKEDLNGGSLXDYXHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDD 193
Query: 196 QVGKLISLVNSVILENGGQPYSDEIFAELKK 226
           QV +L   +  ++ E  G  Y++ +++ +++
Sbjct: 194 QVKELXDCIEDLLXEKNGDHYTNGLYSLIQR 224

>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Mg2+ And Gmppnp Length = 262

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 21  TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
           T++++G+ G GKS+T NS++G +  +     +   +   + RTM   G  +N+IDTPGL 
Sbjct: 38  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81  DSSADSEFVSKEIVKCI-GMAKDGIHAVLLVFSVRN--RFSEEGGAAIHSLESLFGKKVF 137
           ++     +V+ + ++ I G   +    VLL     +  R  E     + ++   FGK+++
Sbjct: 96  EAG----YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFT 145
              ++V T
Sbjct: 152 CKTLLVLT 159

>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Gdp And Mg2+ Length = 262

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 21  TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
           T++++G+ G GKS+T NS++G +  +     +   +   + RTM   G  +N+IDTPGL 
Sbjct: 38  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81  DSSADSEFVSKEIVKCI-GMAKDGIHAVLLVFSVRN--RFSEEGGAAIHSLESLFGKKVF 137
           ++     +V+ + ++ I G   +    VLL     +  R  E     + ++   FGK+++
Sbjct: 96  EAG----YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFT 145
              ++V T
Sbjct: 152 CKTLLVLT 159

>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana, Dimerization Deficient Mutant R130a Length = 262

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
Query: 21  TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
           T++++G+ G GKS+T NS++G +  +     +   +   + RTM   G  +N+IDTPGL 
Sbjct: 38  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81  DSSADSEFVSKEIVKCI-GMAKDGIHAVLLVFSVRNRFS--EEGGAAIHSLESLFGKKVF 137
           ++     +V+ + ++ I G   +    VLL     + ++  E     + ++   FGK+++
Sbjct: 96  EAG----YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFT 145
              ++V T
Sbjct: 152 CKTLLVLT 159

>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of Chloroplast Translocon Components Attoc33 And Pstoc159 Length = 249

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
Query: 21  TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
           T++++G+ G GKS+T NS++G +  +     +   +   + RTM   G  +N+IDTPGL 
Sbjct: 37  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 94
Query: 81  DSSADSEFVSKEIVKCI-GMAKDGIHAVLLVFSVRNRFS--EEGGAAIHSLESLFGKKVF 137
           ++     +V+ + ++ I G   +    VLL     + ++  E     + ++   FGK+++
Sbjct: 95  EAG----YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 150
Query: 138 DYMIVVFT 145
              ++V T
Sbjct: 151 CKTLLVLT 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	6e-69
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	9e-64
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	3e-63
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	9e-58
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	2e-51
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	4e-04

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score =  212 bits (541), Expect = 6e-69
 Identities = 66/250 (26%), Positives = 125/250 (50%), Gaps = 5/250 (2%)

Query: 10  SMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ 69
           +     S +E  ++LVG+TG GKSA GNSIL ++AF+SK GS  +TKTC   +      +
Sbjct: 13  AKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNR 71

Query: 70  VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLE 129
            + +IDTP +F      E + KE+ +C  ++  G H +LLV  +  R++ +   A   ++
Sbjct: 72  EIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVK 130

Query: 130 SLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKD 189
            +FG+    + IV+FT   +L     +L DY+     K L +++  C  R   F+N+ + 
Sbjct: 131 EIFGEDAMGHTIVLFTHKEDLN--GGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEG 188

Query: 190 AATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKLCDQQVEVDSLKGYSKREI 249
           +    +QV +L+  +  +++E  G  Y++ +++ +++           V   K    + +
Sbjct: 189 SNQD-DQVKELMDCIEDLLMEKNGDHYTNGLYSLIQRSKCGPVGSDERVKEFKQSLIKYM 247

Query: 250 SELKEQMKKS 259
              +     +
Sbjct: 248 ETQRSYTALA 257

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score =  198 bits (505), Expect = 9e-64
 Identities = 74/213 (34%), Positives = 123/213 (57%), Gaps = 6/213 (2%)

Query: 14  SPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNV 73
            P N++  +VLVG+TG GKSATGNSILGR+ F S   +  +TK CE + +       + V
Sbjct: 24  EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVV 82

Query: 74  IDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFG 133
           +DTPG+FD+   +   SKEI++CI +   G HA+LLV  +  R++EE   A   +  +FG
Sbjct: 83  VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFG 141

Query: 134 KKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATR 193
           ++   +MI++FT  ++L   D  L DYL  E P+ +++++ +  +R    +NK   A   
Sbjct: 142 ERARSFMILIFTRKDDLG--DTNLHDYLR-EAPEDIQDLMDIFGDRYCALNNKATGAEQE 198

Query: 194 TEQVGKLISLVNSVILENGGQPYSDEIFAELKK 226
             Q  +L+ L+  V+ EN    Y++ ++   ++
Sbjct: 199 A-QRAQLLGLIQRVVRENKEGCYTNRMYQRAEE 230

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score =  183 bits (467), Expect = 9e-58
 Identities = 39/224 (17%), Positives = 81/224 (36%), Gaps = 22/224 (9%)

Query: 19  ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPG 78
             T++++G+ G GKS+T NS++G +  +     +   +   + RTM   G  +N+IDTPG
Sbjct: 36  SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPG 93

Query: 79  LFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFD 138
           L ++   +    + I   +      +   +    V     E     + ++   FGK+++ 
Sbjct: 94  LVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVY-AVDELDKQVVIAITQTFGKEIWC 152

Query: 139 YMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAA------- 191
             ++V T       ++ + E +        LK I    + R+  F++             
Sbjct: 153 KTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGR 212

Query: 192 ------------TRTEQVGKLISLVNSVILENGGQPYSDEIFAE 223
                            +  L+  +  V        + D    E
Sbjct: 213 CSKNDKDEKALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE 256

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score =  168 bits (426), Expect = 2e-51
 Identities = 38/202 (18%), Positives = 78/202 (38%), Gaps = 22/202 (10%)

Query: 19  ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPG 78
             T++++G+ G GKS+T NSI+G R        S   +   + R+    G  +N+IDTPG
Sbjct: 39  SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR--AGFTLNIIDTPG 96

Query: 79  LFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSV-RNRFSEEGGAAIHSLESLFGKKVF 137
           L +    ++     I   +      I  +L V  +   R          ++   FGK ++
Sbjct: 97  LIEGGYINDMALNIIKSFL--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIW 154

Query: 138 DYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQV 197
           +  IV  T       +    +++   +  + L ++++   + +                 
Sbjct: 155 NKAIVALTHAQFSPPDGLPYDEFF-SKRSEALLQVVRSGASLKKDAQASDIPV------- 206

Query: 198 GKLISLVNSVILENGGQPYSDE 219
                    V++EN G+   ++
Sbjct: 207 ---------VLIENSGRCNKND 219

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 14/142 (9%)

Query: 15  PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTC-EMQRTMLKDGQVVNV 73
             ++   + + G TG+GKS+  N++ G    +  A  +GV +   E       +   V  
Sbjct: 65  IDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVF 124

Query: 74  IDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFG 133
            D PG+  ++   +   +++                +     RF +       ++     
Sbjct: 125 WDLPGIGSTNFPPDTYLEKMKF--------YEYDFFIIISATRFKKNDIDIAKAISM-MK 175

Query: 134 KKVFDYMIVVFTGGNELEDNDE 155
           K+       V T  +    N+ 
Sbjct: 176 KEF----YFVRTKVDSDITNEA 193

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 6e-05
 Identities = 43/257 (16%), Positives = 74/257 (28%), Gaps = 82/257 (31%)

Query: 55  TKTCEMQ---RTML--------KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDG 103
            +T E Q   + +L         +    +V D P           +SKE +  I M+KD 
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP--------KSILSKEEIDHIIMSKDA 60

Query: 104 IHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP 163
           +   L +F                L S   +++    +        L  N + L   +  
Sbjct: 61  VSGTLRLFWT--------------LLS-KQEEMVQKFV-----EEVLRINYKFLMSPIKT 100

Query: 164 ECPKPLKEILQLCENRRVLF-DNK--TKDAATRTEQVGKLI------------------- 201
           E  +P        E R  L+ DN+   K   +R +   KL                    
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160

Query: 202 ----SLVNSVILENGGQP-YSDEIF----------AELKKGATKLCDQ-----QVEVDSL 241
                +   V L    Q     +IF            + +   KL  Q         D  
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 242 KGYSKREISELKEQMKK 258
               K  I  ++ ++++
Sbjct: 221 SNI-KLRIHSIQAELRR 236

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 21  TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQV---VNVIDTP 77
            ++ VG TG GKS   +++   +     A  +      +     L++  V   + ++ T 
Sbjct: 44  NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTV 103

Query: 78  GLFDSSADSEFVSKEIVKCI 97
           G F    + E   K IV+ I
Sbjct: 104 G-FGDQINKEDSYKPIVEFI 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	100.0
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	100.0
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.96
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.89
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.88
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.87
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.87
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.87
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.86
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.86
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.86
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.84
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.83
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.83
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.82
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.82
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.82
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.82
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.82
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.82
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.82
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.82
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.82
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.82
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.81
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.81
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.81
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.81
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.81
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.81
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.81
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.81
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.81
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.81
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.81
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.81
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.81
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.81
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.81
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.81
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.8
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.8
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.8
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.8
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.8
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.8
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.8
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.8
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.8
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.8
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.8
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.79
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.79
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.79
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.79
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.79
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.79
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.79
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.79
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.79
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.79
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.79
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.79
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.79
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.79
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.79
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.79
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.79
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.78
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.78
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.78
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.78
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.78
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.78
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.78
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.78
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.78
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.78
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.78
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.78
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.78
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.78
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.78
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.78
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.78
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.78
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.77
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.77
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.77
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.77
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.77
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.77
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.77
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.77
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.77
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.77
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.77
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.77
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.77
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.77
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.77
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.77
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.77
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.77
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.76
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.76
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.76
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.76
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.76
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.76
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.76
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.76
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.76
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.75
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.75
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.75
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.75
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.75
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.75
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.75
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.75
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.75
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.75
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.74
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.74
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.74
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.74
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.73
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.73
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.73
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.73
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.73
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.73
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.72
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.72
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.72
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.72
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.71
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.71
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.71
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.71
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.71
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.71
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.7
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.7
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.7
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.7
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.69
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.69
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.69
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.68
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.68
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.68
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.68
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.67
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.66
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.66
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.66
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.65
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.65
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.65
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.46
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.64
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.64
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.64
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.64
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.62
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.61
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.6
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.6
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.6
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.59
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.59
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.57
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.57
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.56
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.56
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.56
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.56
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.55
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.54
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.53
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.53
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.51
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.5
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.5
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.5
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.48
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.48
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.46
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.45
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.42
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.4
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.36
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.36
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.35
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.34
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.31
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.3
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.3
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.28
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.25
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.24
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.2
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.2
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.2
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	99.16
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	99.08
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.06
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.05
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.04
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.03
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.03
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.98
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.92
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.88
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.84
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.83
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.71
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.66
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.6
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.6
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.55
2xxa_A	433	Signal recognition particle protein; protein trans	98.54
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	98.49
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.36
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.29
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	98.28
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.26
2og2_A	359	Putative signal recognition particle receptor; nuc	98.26
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.25
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.19
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.19
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	98.08
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.03
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	98.03
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.02
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.98
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.94
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.7
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.67
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.6
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.6
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.56
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.51
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.47
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.41
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.4
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.38
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.35
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.34
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.33
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.32
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.31
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.31
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.3
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.3
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.3
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.28
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.27
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.27
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.27
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.27
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.26
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.25
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.25
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.25
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.24
1g6h_A	257	High-affinity branched-chain amino acid transport	97.24
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.23
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.22
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.22
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.21
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.21
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.2
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.18
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.18
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.16
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.16
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.16
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.16
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.16
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.15
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.14
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.12
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.12
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.12
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.12
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.08
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.07
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.06
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.05
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.05
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.04
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.04
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.03
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.02
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.02
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.0
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.97
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	96.96
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.96
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.96
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.95
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.95
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.95
3end_A	307	Light-independent protochlorophyllide reductase ir	96.94
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.94
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.93
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.92
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.91
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.91
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.9
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.9
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.89
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.85
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.84
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.83
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.82
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.81
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.79
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.78
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.78
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.77
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.74
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.73
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.73
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.73
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.72
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.72
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.71
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.7
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.7
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.7
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.7
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.69
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.69
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.68
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.67
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.67
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.67
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.66
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.65
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.64
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.62
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.62
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.62
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.62
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.6
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.59
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.59
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.58
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.57
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.57
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.56
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.56
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.55
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.54
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.53
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.53
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.53
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.53
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.53
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.51
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.51
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.51
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.5
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.49
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.49
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.49
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.49
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.47
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.46
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.45
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.45
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.45
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.45
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.44
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.4
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.39
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.38
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.38
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.38
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.38
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.34
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.33
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.32
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.31
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.31
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.3
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.3
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.29
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.29
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.28
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.27
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.24
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.24
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.22
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.22
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.22
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.19
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.19
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.17
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.17
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.16
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.15
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.14
1via_A	175	Shikimate kinase; structural genomics, transferase	96.13
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.13
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.12
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.1
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.09
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.09
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.07
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.07
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.06
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.05
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.04
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.03
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.03
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.03
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.02
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.02
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.0
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.99
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.99
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.98
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.98
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	95.98
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.98
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.96
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.95
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.94
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.94
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.94
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.9
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.9
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.89
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.89
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.88
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.87
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	95.83
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	95.83
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.8
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.79
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.76
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.74
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.74
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.73
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.72
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.7
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.69
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.69
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.67
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.67
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.65
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.65
3bos_A	242	Putative DNA replication factor; P-loop containing	95.63
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.63
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.54
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.51
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.5
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.5
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.44
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.44
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.37
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.36
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.35
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.35
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.35
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.35
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.33
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	95.33
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.32
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.32
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.32
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.28
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	95.26
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.26
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.23
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.22
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	95.21
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.2
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.18
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.09
3co5_A	143	Putative two-component system transcriptional RES	95.09
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.07
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	94.99
1tue_A	212	Replication protein E1; helicase, replication, E1E	94.98
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	94.97
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.91
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.88
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	94.84
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	94.78
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	94.77
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	94.76
2qgz_A	308	Helicase loader, putative primosome component; str	94.74
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.71
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.71

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.8e-32  Score=223.04  Aligned_cols=209  Identities=35%  Similarity=0.635  Sum_probs=145.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ...++|+|+|++|||||||+|+|+|...+.......++|..+...... ..+..+.||||||+.+...+.......+..+
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~  105 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSS-WKETELVVVDTPGIFDTEVPNAETSKEIIRC  105 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEE-ETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEE-eCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence            456899999999999999999999988755544434666666665555 5778999999999998777667777788888


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      +..+++++|++|+|+|++ +++..+..++..+.+.++.....|+++|+||+|+...  ..+++++.. ....++.+++.|
T Consensus       106 ~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~l~~~~  181 (239)
T 3lxx_A          106 ILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQDLMDIF  181 (239)
T ss_dssp             HHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHHHH
T ss_pred             HHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHHHHHHc
Confidence            888889999999999998 7777888888888887877666799999999999876  677777763 456799999999


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKGATKL  231 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (259)
                      +.++++|++.+... ....++.+|++.|..++.++++.+|+++++++.+++..+.
T Consensus       182 ~~~~~~~~~~~~~~-~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e~~~~~~  235 (239)
T 3lxx_A          182 GDRYCALNNKATGA-EQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQ  235 (239)
T ss_dssp             SSSEEECCTTCCHH-HHHHHHHHHHHHHHHHHHHCTTSCC---------------
T ss_pred             CCEEEEEECCCCcc-ccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHH
Confidence            99999999876432 4457999999999999999999999999999988664433

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.96  E-value=1.4e-27  Score=197.50  Aligned_cols=205  Identities=31%  Similarity=0.573  Sum_probs=155.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ....++|+|+|++|||||||+|+|++...+.....+.++|..+....+. ..+..+.||||||+.+.......+...+..
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGS-WGNREIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEE-ETTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEE-eCCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            4456899999999999999999999988665544443356655555444 577899999999998776666666666777


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEe-CCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFT-GGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~n-k~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .+..+++.+|++|+|+|++ +++..+..+++++.+.++.....|+++|+| |+|+..   ..+..++.......++.++.
T Consensus        98 ~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~---~~~~~~i~~~~~~~~~~~~~  173 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG---GSLMDYMHDSDNKALSKLVA  173 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHHH
T ss_pred             HHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC---ccHHHHHHhcchHHHHHHHH
Confidence            7777788999999999998 588888888899998887655568888888 999873   34555554333456777888


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKK  226 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~  226 (259)
                      .|+.++..|.. ...++....|+.+|++.|.+++..+.+.+|.++.+.++.+
T Consensus       174 ~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~  224 (260)
T 2xtp_A          174 ACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQR  224 (260)
T ss_dssp             HTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC--
T ss_pred             HhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH
Confidence            99887765544 3344455689999999999999988878898888777654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.89  E-value=4.2e-22  Score=160.41  Aligned_cols=179  Identities=13%  Similarity=0.162  Sum_probs=116.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~--~~~~~~~   94 (259)
                      ...++|+|+|.+|||||||+|+|++...........++|............+..+.||||||+.+......  .....+.
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  106 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL  106 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence            45689999999999999999999998732222334556666655544434567899999999876533221  1112222


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .........+|++|||+|++++++..+..++.++.. .+    .|+++|+||+|+...  ........     .+...+.
T Consensus       107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-~~----~p~i~v~nK~Dl~~~--~~~~~~~~-----~~~~~l~  174 (223)
T 4dhe_A          107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-TG----KPIHSLLTKCDKLTR--QESINALR-----ATQKSLD  174 (223)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-GC----CCEEEEEECGGGSCH--HHHHHHHH-----HHHHHHH
T ss_pred             HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-cC----CCEEEEEeccccCCh--hhHHHHHH-----HHHHHHH
Confidence            222223456899999999997888888888777765 22    499999999998865  33332222     2333333


Q ss_pred             Hc-----CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          175 LC-----ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       175 ~~-----~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      .+     .....+|..++..+    .|+.+|++.|.+.++..
T Consensus       175 ~~~~~~~~~~~~~~~~SA~~g----~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          175 AYRDAGYAGKLTVQLFSALKR----TGLDDAHALIESWLRPA  212 (223)
T ss_dssp             HHHHHTCCSCEEEEEEBTTTT----BSHHHHHHHHHHHHC--
T ss_pred             hhhhcccCCCCeEEEeecCCC----cCHHHHHHHHHHhcCcc
Confidence            32     23333444444333    78999999999888654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.88  E-value=3.8e-22  Score=168.74  Aligned_cols=177  Identities=14%  Similarity=0.214  Sum_probs=119.5

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHH
Q 024985           14 SPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD-GQVVNVIDTPGLFDSSADSEFVSKE   92 (259)
Q Consensus        14 s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~liDTPG~~~~~~~~~~~~~~   92 (259)
                      ++..+...|+++|++|||||||+|+|+|...... ...+++|......... .. +..+.||||||+.+.. ......+.
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~-s~~~~tT~~~~~~~~~-~~~~~~i~lvDTPG~~~~~-~~~~l~~~   81 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII-SPKAGTTRMRVLGVKN-IPNEAQIIFLDTPGIYEPK-KSDVLGHS   81 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEE-ETTTEEEEEEECCCCCCCC-TTCHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCcccc-CCCCCceeeEEEEEEe-cCCCCeEEEEECcCCCccc-cchhHHHH
Confidence            3445668999999999999999999999886332 2233445444444333 45 7899999999998754 12334455


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHH-HHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985           93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAA-IHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE  171 (259)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~-l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (259)
                      +......++..+|++|+|+|++++.+..+... ++.+.. .    ..|+++|+||+|+..+. ..+.+        .+..
T Consensus        82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-~----~~pvilV~NK~Dl~~~~-~~~~~--------~~~~  147 (308)
T 3iev_A           82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-L----NKPVIVVINKIDKIGPA-KNVLP--------LIDE  147 (308)
T ss_dssp             HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-G----CCCEEEEEECGGGSSSG-GGGHH--------HHHH
T ss_pred             HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-c----CCCEEEEEECccCCCCH-HHHHH--------HHHH
Confidence            55555556667899999999997888887665 555554 2    34999999999987321 22222        3344


Q ss_pred             HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      +.+.++....+|..++..+    .|+.+|++.+.+.+++.
T Consensus       148 l~~~~~~~~~i~~vSA~~g----~gv~~L~~~l~~~l~~~  183 (308)
T 3iev_A          148 IHKKHPELTEIVPISALKG----ANLDELVKTILKYLPEG  183 (308)
T ss_dssp             HHHHCTTCCCEEECBTTTT----BSHHHHHHHHHHHSCBC
T ss_pred             HHHhccCCCeEEEEeCCCC----CCHHHHHHHHHHhCccC
Confidence            5555543233444444433    79999999999988754

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.87  E-value=1.7e-21  Score=161.15  Aligned_cols=192  Identities=18%  Similarity=0.244  Sum_probs=130.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ...++|+++|.+|+|||||+|+|++....... ...++|.......+. .++..+.||||||+.+.......+.+.+..+
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~-~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS-PFQAEGLRPVMVSRT-MGGFTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCC-SSCC-CCCCEEEEEE-ETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcceeeEEEEEE-ECCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            35689999999999999999999998753322 234445555544444 5778999999999987655455555555555


Q ss_pred             HhhcCCCccEEEEEEeCCC-CCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRN-RFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      +  ...++|++|||++++. +++..+..+++.+.+.++.....|+++|+||+|+.......+++++.. ....++.++..
T Consensus       112 l--~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~~i~~  188 (262)
T 3def_A          112 L--VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLKTIRA  188 (262)
T ss_dssp             T--TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHHHHHH
T ss_pred             H--hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHHHHHH
Confidence            4  3457899999988863 577778889999999888777779999999999875544677777652 23345666655


Q ss_pred             cC-----------CcEEEEeCCCccccc---------chhHHHHHHHHHHHHHHHhCC
Q 024985          176 CE-----------NRRVLFDNKTKDAAT---------RTEQVGKLISLVNSVILENGG  213 (259)
Q Consensus       176 ~~-----------~~~~~~~~~~~~~~~---------~~~~i~eLl~~i~~~~~~~~~  213 (259)
                      +.           .++++++++.....+         ....+..|+..|.+++.....
T Consensus       189 ~~~~~~~~~~~~~~pv~~ve~~~~~~~n~~g~~~lp~~~~w~~~~~~~~~~~~~~~~~  246 (262)
T 3def_A          189 GSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATNQRK  246 (262)
T ss_dssp             HHTCCHHHHHHHCCEEEECCCCTTCCBCTTSCBBCTTSCBSCC-CHHHHHHHHTSCSC
T ss_pred             HhCccccccccccCCEEEEeCCCCCCCCCCCCeECCCCCeeHHHHHHHHHHHHhCCCC
Confidence            43           344455554322111         112567778887777654333

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.87  E-value=9.4e-21  Score=149.18  Aligned_cols=172  Identities=16%  Similarity=0.230  Sum_probs=104.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHH--HHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEF--VSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~--~~~~~~   94 (259)
                      ...++|+++|.+|||||||+|+|++...........+.|.......   . +..+.+|||||+.+.......  ....+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI---I-NDELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE---E-TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE---E-CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence            4578999999999999999999998863222233344555544432   2 347999999998776544321  111222


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .........+|++++|+|++++.+..+..+++++.. .+    .|+++|+||+|+...  ..+.....     .++..+.
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~----~p~i~v~nK~Dl~~~--~~~~~~~~-----~~~~~~~  164 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-YG----IPVIVIATKADKIPK--GKWDKHAK-----VVRQTLN  164 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSCG--GGHHHHHH-----HHHHHHT
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECcccCCh--HHHHHHHH-----HHHHHHc
Confidence            222223346699999999997888888777777765 22    399999999998865  33332111     1222121


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      . .....++..++..+    .++.+|++.|.+.+.
T Consensus       165 ~-~~~~~~~~~Sa~~~----~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          165 I-DPEDELILFSSETK----KGKDEAWGAIKKMIN  194 (195)
T ss_dssp             C-CTTSEEEECCTTTC----TTHHHHHHHHHHHHT
T ss_pred             c-cCCCceEEEEccCC----CCHHHHHHHHHHHhc
Confidence            1 12233455554443    789999999887653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.87  E-value=2.7e-20  Score=146.21  Aligned_cols=172  Identities=16%  Similarity=0.203  Sum_probs=112.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHH--HHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEF--VSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~--~~~~~~   94 (259)
                      ...++|+++|.+|||||||+|+|++..... .....+.|......    ..+..+.+|||||+.........  ....+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFY----LVNSKYYFVDLPGYGYAKVSKKERMLWKRLV   95 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEE----EETTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEE----EECCcEEEEECCCCccccCChhhHHHHHHHH
Confidence            456899999999999999999999987322 22234445444433    22457889999998765443321  122233


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .........+|++++|+|++...+..+..++.++... +    .|+++|+||+|+.+.  ........     .++....
T Consensus        96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-~----~p~i~v~nK~Dl~~~--~~~~~~~~-----~~~~~~~  163 (195)
T 3pqc_A           96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-N----IPFTIVLTKMDKVKM--SERAKKLE-----EHRKVFS  163 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-T----CCEEEEEECGGGSCG--GGHHHHHH-----HHHHHHH
T ss_pred             HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCh--HHHHHHHH-----HHHHHHh
Confidence            3333344677999999999877788777777777663 3    399999999998855  33333222     2334444


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..+. +.++..++..+    .++.+|++.+.+.+.+
T Consensus       164 ~~~~-~~~~~~Sa~~~----~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          164 KYGE-YTIIPTSSVTG----EGISELLDLISTLLKE  194 (195)
T ss_dssp             SSCC-SCEEECCTTTC----TTHHHHHHHHHHHHC-
T ss_pred             hcCC-CceEEEecCCC----CCHHHHHHHHHHHhhc
Confidence            3232 23444444443    7999999999887754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.86  E-value=1.2e-20  Score=156.67  Aligned_cols=203  Identities=20%  Similarity=0.302  Sum_probs=132.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ...++|+++|.+|+|||||+|+|++....... ...++|......... ..+..+.||||||+.+...........+..+
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~-~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRS-RAGFTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEE-ETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeeEEEEEe-eCCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            34689999999999999999999998753332 234445444444443 5677999999999976544334444444333


Q ss_pred             HhhcCCCccEEEEEEeCCC-CCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRN-RFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      +  ....+|++|||+|++. +++..+..+++.+.+.++...+.|+++|+||+|+.++.+.+++++..+ ....++..++.
T Consensus       115 ~--~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~~  191 (270)
T 1h65_A          115 L--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRS  191 (270)
T ss_dssp             T--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHH
T ss_pred             h--hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHHH
Confidence            2  3457899999988863 577778889999988888766679999999999876533466666542 22234444332


Q ss_pred             cC----------CcEEEEeCCCcc-----c----ccchhHHHHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 024985          176 CE----------NRRVLFDNKTKD-----A----ATRTEQVGKLISLVNSVILENGGQPYS-DEIFAEL  224 (259)
Q Consensus       176 ~~----------~~~~~~~~~~~~-----~----~~~~~~i~eLl~~i~~~~~~~~~~~~~-~~~~~~~  224 (259)
                      ..          .++.+..+....     +    .....+...|++.|.+++...+...+. +++.+..
T Consensus       192 ~~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d~~~~~~~  260 (270)
T 1h65_A          192 GASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDKL  260 (270)
T ss_dssp             HTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECCHHHHHHH
T ss_pred             hhhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecCHHHhcCC
Confidence            11          133333332110     0    011235779999999999887777654 4555543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.86  E-value=8.8e-21  Score=159.66  Aligned_cols=167  Identities=17%  Similarity=0.121  Sum_probs=113.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ...+|+++|++|||||||+|+|++....... ..+++|..... .+...++..+.||||||+.+...   .+.+.+....
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs-~~~~tTr~~i~-~i~~~~~~~l~l~DTpG~~~~~~---~l~~~~~~~~   80 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPIS-PRPQTTRKRLR-GILTEGRRQIVFVDTPGLHKPMD---ALGEFMDQEV   80 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEE-EEEEETTEEEEEEECCCCCCCCS---HHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeec-CCCCceeEEEE-EEEEeCCcEEEEecCccccchhh---HHHHHHHHHH
Confidence            4568999999999999999999998863321 12334443332 22235677999999999986532   3444556666


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCccc-HHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDET-LEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~-~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ..++..+|++|+|+|++++++..+..+++.+.+..   ...|+++|+||+|+...  .. +.+            .++.+
T Consensus        81 ~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~---~~~p~ilV~NK~Dl~~~--~~~~~~------------~~~~~  143 (301)
T 1wf3_A           81 YEALADVNAVVWVVDLRHPPTPEDELVARALKPLV---GKVPILLVGNKLDAAKY--PEEAMK------------AYHEL  143 (301)
T ss_dssp             HHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGT---TTSCEEEEEECGGGCSS--HHHHHH------------HHHHT
T ss_pred             HHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhc---CCCCEEEEEECcccCCc--hHHHHH------------HHHHh
Confidence            67788999999999998788888777767666532   12499999999998754  22 221            22222


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .....++..++..+    .++.+|++.+...+++
T Consensus       144 ~~~~~~~~iSA~~g----~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          144 LPEAEPRMLSALDE----RQVAELKADLLALMPE  173 (301)
T ss_dssp             STTSEEEECCTTCH----HHHHHHHHHHHTTCCB
T ss_pred             cCcCcEEEEeCCCC----CCHHHHHHHHHHhccc
Confidence            11112455554433    8999999999887754

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.86  E-value=2.9e-20  Score=150.41  Aligned_cols=184  Identities=17%  Similarity=0.103  Sum_probs=106.2

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHH
Q 024985           12 PTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSK   91 (259)
Q Consensus        12 ~~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~   91 (259)
                      ++......++|+|+|.+|||||||+|+|++......  ...+.|......... ..+..+.+|||||+.+......... 
T Consensus        22 ~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~-   97 (228)
T 2qu8_A           22 LPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFD-HKLNKYQIIDTPGLLDRAFENRNTI-   97 (228)
T ss_dssp             CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEE-ETTEEEEEEECTTTTTSCGGGCCHH-
T ss_pred             CCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeee-cCCCeEEEEECCCCcCcccchhhhH-
Confidence            444445679999999999999999999999875322  223445555544433 4667899999999865321111000 


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985           92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE  171 (259)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (259)
                      .. ..+......+|++|+|+|++++.+......+.++..+.......|+++|+||+|+...  ..+....    ...+..
T Consensus        98 ~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~--~~~~~~~----~~~~~~  170 (228)
T 2qu8_A           98 EM-TTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM--DSLSIDN----KLLIKQ  170 (228)
T ss_dssp             HH-HHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC----CCCHHH----HHHHHH
T ss_pred             HH-HHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc--hhhHHHH----HHHHHH
Confidence            01 1111224567999999999865443222233333332221113599999999998754  2211100    012344


Q ss_pred             HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +....+....+|..++..+    .++.+|++.|.+.+.+
T Consensus       171 ~~~~~~~~~~~~~~SA~~g----~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          171 ILDNVKNPIKFSSFSTLTG----VGVEQAKITACELLKN  205 (228)
T ss_dssp             HHHHCCSCEEEEECCTTTC----TTHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCceEEEEecccC----CCHHHHHHHHHHHHHH
Confidence            4444442244555565544    7899999998887654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.84  E-value=1.5e-20  Score=145.63  Aligned_cols=168  Identities=14%  Similarity=0.176  Sum_probs=106.6

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ....++|+++|.+|||||||+|+|++.......  .++.|.......+. .++..+.+|||||......           
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~-----------   70 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQE--AGGITQHIGAYQVT-VNDKKITFLDTPGHEAFTT-----------   70 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSS--CCSSSTTCCCCEEE-ETTEEEEESCCCSSSSSSC-----------
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCC--CCceeEeeeEEEEE-eCCceEEEEECCCCHHHHH-----------
Confidence            346689999999999999999999987753322  22233333333333 4677899999999764322           


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ........+|++|+|+|++++........+..+..   .  ..|+++|+||+|+.......+...+..     ...+...
T Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~---~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~  140 (178)
T 2lkc_A           71 MRARGAQVTDIVILVVAADDGVMPQTVEAINHAKA---A--NVPIIVAINKMDKPEANPDRVMQELME-----YNLVPEE  140 (178)
T ss_dssp             SCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGG---G--SCCEEEEEETTTSSCSCHHHHHHHHTT-----TTCCBTT
T ss_pred             HHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHh---C--CCCEEEEEECccCCcCCHHHHHHHHHh-----cCcChhH
Confidence            11245678899999999986666666555544422   2  349999999999875421222222211     0001111


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      ++..+.++..++..+    .++.+|++.|.+.+...
T Consensus       141 ~~~~~~~~~~Sa~~~----~gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          141 WGGDTIFCKLSAKTK----EGLDHLLEMILLVSEME  172 (178)
T ss_dssp             TTSSEEEEECCSSSS----HHHHHHHHHHHHHHHHT
T ss_pred             cCCcccEEEEecCCC----CCHHHHHHHHHHhhhhh
Confidence            222245666666554    89999999998877653

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.83  E-value=7.7e-20  Score=139.25  Aligned_cols=158  Identities=20%  Similarity=0.234  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      ++|+++|.+|+|||||+|++++....... ...+.|.......+. ..+..+.+|||||......    ....+......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~   75 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVA-DVPGVTRDLKEGVVE-TDRGRFLLVDTGGLWSGDK----WEKKIQEKVDR   75 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEE-ETTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeecc-CCCCceecceEEEEE-eCCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence            68999999999999999999987642221 223444444444444 5677999999999875332    11223333344


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN-  178 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  178 (259)
                      ....+|++++|+|++++++..+..+..++.. .+    .|+++|+||+|+.... ....            .+. ..+. 
T Consensus        76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~----~p~ilv~nK~Dl~~~~-~~~~------------~~~-~~~~~  136 (161)
T 2dyk_A           76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRR-KG----KPVILVATKVDDPKHE-LYLG------------PLY-GLGFG  136 (161)
T ss_dssp             HTTTCSEEEEEEESSSCCCHHHHHHHHHHHH-HT----CCEEEEEECCCSGGGG-GGCG------------GGG-GGSSC
T ss_pred             HHHhCCEEEEEEECCCcccHhHHHHHHHHHh-cC----CCEEEEEECcccccch-HhHH------------HHH-hCCCC
Confidence            5677899999999997788777667776665 22    3999999999987431 1111            111 2232 


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      .+  +..++..+    .++.++++.+.+.+
T Consensus       137 ~~--~~~Sa~~~----~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          137 DP--IPTSSEHA----RGLEELLEAIWERL  160 (161)
T ss_dssp             SC--EECBTTTT----BSHHHHHHHHHHHC
T ss_pred             Ce--EEEecccC----CChHHHHHHHHHhC
Confidence            33  33333333    78999999887653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.83  E-value=2.2e-19  Score=137.91  Aligned_cols=162  Identities=10%  Similarity=0.068  Sum_probs=98.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+++|.+|||||||+|++++........  +..+.......+. .++  ..+.+|||||...           +.
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~   69 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHI--TTLGASFLTKKLN-IGGKRVNLAIWDTAGQER-----------FH   69 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCC--CCCSCEEEEEEEE-SSSCEEEEEEEECCCC---------------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCC--CccceEEEEEEEE-ECCEEEEEEEEECCCcHh-----------hh
Confidence            345899999999999999999999776422221  1122222222222 233  3788999999542           22


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      .........+|++++|+|++++.+... ..++..+......  ..|+++|+||+|+.......         ......+.
T Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~---------~~~~~~~~  138 (170)
T 1z08_A           70 ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEKERHVS---------IQEAESYA  138 (170)
T ss_dssp             ---CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGGGCCSC---------HHHHHHHH
T ss_pred             hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccccC---------HHHHHHHH
Confidence            233445678899999999985433222 3445555554433  34999999999986531111         12344555


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ...+..++..++.  .+    .++.++++.|.+.+.
T Consensus       139 ~~~~~~~~~~Sa~--~~----~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          139 ESVGAKHYHTSAK--QN----KGIEELFLDLCKRMI  168 (170)
T ss_dssp             HHTTCEEEEEBTT--TT----BSHHHHHHHHHHHHH
T ss_pred             HHcCCeEEEecCC--CC----CCHHHHHHHHHHHHh
Confidence            6656555444443  32    789999999887664

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.82  E-value=6.3e-19  Score=139.00  Aligned_cols=174  Identities=14%  Similarity=0.102  Sum_probs=102.5

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 024985           14 SPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI   93 (259)
Q Consensus        14 s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~   93 (259)
                      ++....++|+|+|.+|||||||+|+|++.........   .|.......+. ..+..+.+|||||...           +
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~---~t~~~~~~~~~-~~~~~~~i~Dt~G~~~-----------~   76 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHIT---ATVGYNVETFE-KGRVAFTVFDMGGAKK-----------F   76 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCC---CCSSEEEEEEE-ETTEEEEEEEECCSGG-----------G
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccc---cccceeEEEEE-eCCEEEEEEECCCCHh-----------H
Confidence            4455678999999999999999999998875331111   12223333333 5677999999999642           2


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhccc------ccCeEEEEEeCCCCCCCCcccHHhhhCCCCC
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKK------VFDYMIVVFTGGNELEDNDETLEDYLGPECP  166 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~------~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~  166 (259)
                      .......+..+|++|+|+|++++.+... ..++..+.......      ...|+++|+||+|+...  ...+++...   
T Consensus        77 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~---  151 (199)
T 4bas_A           77 RGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVEI---  151 (199)
T ss_dssp             GGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHHH---
T ss_pred             HHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHHH---
Confidence            2333455778999999999985543332 22333332211100      13599999999998765  333322210   


Q ss_pred             chHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985          167 KPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG  213 (259)
Q Consensus       167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~  213 (259)
                      ..+..+.+.  ..+.+|..++..+    .++.++++.|.+.+.+..+
T Consensus       152 ~~~~~~~~~--~~~~~~~~Sa~~g----~gv~~l~~~l~~~~~~~~~  192 (199)
T 4bas_A          152 LDLTTLMGD--HPFVIFASNGLKG----TGVHEGFSWLQETASRQSG  192 (199)
T ss_dssp             HTHHHHHTT--SCEEEEECBTTTT----BTHHHHHHHHHHHHHHHC-
T ss_pred             hcchhhccC--CeeEEEEeeCCCc----cCHHHHHHHHHHHHHHHhc
Confidence            011111122  2344555555444    7999999999888766543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.82  E-value=1.2e-19  Score=142.35  Aligned_cols=171  Identities=13%  Similarity=0.064  Sum_probs=103.1

Q ss_pred             CCCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-eCCcEEEEEeCCCCCCCCCChHH
Q 024985           10 SMPTSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEF   88 (259)
Q Consensus        10 ~~~~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~   88 (259)
                      |......+...+|+++|.+|||||||+|+|++.........+.+.+....  .+.. .....+.+|||||......    
T Consensus        13 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~l~Dt~G~~~~~~----   86 (189)
T 2gf9_A           13 GLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK--TVYRHDKRIKLQIWDTAGQERYRT----   86 (189)
T ss_dssp             -CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEE--EEEETTEEEEEEEEECCSCCSSCC----
T ss_pred             CCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEE--EEEECCeEEEEEEEeCCCcHHHhh----
Confidence            33333344568999999999999999999998775322222222222222  2221 1234899999999654322    


Q ss_pred             HHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCc
Q 024985           89 VSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPK  167 (259)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~  167 (259)
                             .....+..+|++|+|+|++++.+... ..++..+.....  ...|+++|+||+|+....  ..       ...
T Consensus        87 -------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~--~~-------~~~  148 (189)
T 2gf9_A           87 -------ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW--DNAQVILVGNKCDLEDER--VV-------PAE  148 (189)
T ss_dssp             -------SGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGC--CS-------CHH
T ss_pred             -------hHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccccccc--CC-------CHH
Confidence                   12345567899999999984433222 344555544321  134999999999986431  11       112


Q ss_pred             hHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          168 PLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..+.+.+..+..++.  .++..+    .++.+|++.|.+.+.+
T Consensus       149 ~~~~~~~~~~~~~~~--~Sa~~g----~gi~~l~~~l~~~i~~  185 (189)
T 2gf9_A          149 DGRRLADDLGFEFFE--ASAKEN----INVKQVFERLVDVICE  185 (189)
T ss_dssp             HHHHHHHHHTCEEEE--CBTTTT----BSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCeEEE--EECCCC----CCHHHHHHHHHHHHHH
Confidence            345556666654443  333333    7899999998877654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.82  E-value=4.8e-20  Score=151.74  Aligned_cols=161  Identities=13%  Similarity=0.111  Sum_probs=102.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~--~~~~~~~~~~   97 (259)
                      ++|+|+|.+|||||||+|+|+|......  ..+++|.......+. .++..+.+|||||+++......  ...+.+....
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~--~~pg~Tv~~~~~~~~-~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~   78 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVG--NWPGVTVEKKTGEFL-LGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS   78 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEE--ECTTSSSEEEEEEEE-ETTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCcc--CCCCceEEEEEEEEE-ECCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence            5899999999999999999999874332  235666666555554 5678999999999986543100  1112222221


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      . ....+|++|+|+|+++ . .....+..++.+ .    ..|+++|+||+|+....  .        .......+.+..+
T Consensus        79 ~-~~~~~d~vi~VvDas~-~-~~~~~l~~~l~~-~----~~pvilv~NK~Dl~~~~--~--------~~~~~~~l~~~lg  140 (256)
T 3iby_A           79 V-IDLEYDCIINVIDACH-L-ERHLYLTSQLFE-L----GKPVVVALNMMDIAEHR--G--------ISIDTEKLESLLG  140 (256)
T ss_dssp             H-HHSCCSEEEEEEEGGG-H-HHHHHHHHHHTT-S----CSCEEEEEECHHHHHHT--T--------CEECHHHHHHHHC
T ss_pred             H-hhCCCCEEEEEeeCCC-c-hhHHHHHHHHHH-c----CCCEEEEEEChhcCCcC--C--------cHHHHHHHHHHcC
Confidence            1 1257899999999984 2 222333344433 2    34999999999986431  1        1223445556666


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      .+++..++.  .    ..|+.+|++.|.+.
T Consensus       141 ~~vi~~SA~--~----g~gi~el~~~i~~~  164 (256)
T 3iby_A          141 CSVIPIQAH--K----NIGIPALQQSLLHC  164 (256)
T ss_dssp             SCEEECBGG--G----TBSHHHHHHHHHTC
T ss_pred             CCEEEEECC--C----CCCHHHHHHHHHhh
Confidence            554444433  3    27999999999887

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.82  E-value=4.6e-20  Score=153.46  Aligned_cols=173  Identities=18%  Similarity=0.263  Sum_probs=98.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCC----CCCcceeeEEEEEEe-eCC--cEEEEEeCCCCCCCCCChH---
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAG----SSGVTKTCEMQRTML-KDG--QVVNVIDTPGLFDSSADSE---   87 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~----~~~~T~~~~~~~~~~-~~~--~~~~liDTPG~~~~~~~~~---   87 (259)
                      ..++|+++|.+|+|||||+|+|++...+.....    ....|.......... .++  ..+.||||||+.+......   
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            358999999999999999999999887654321    012222222222221 233  3899999999976543321   


Q ss_pred             HHH----HHHHHHHhh---------cCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC
Q 024985           88 FVS----KEIVKCIGM---------AKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDN  153 (259)
Q Consensus        88 ~~~----~~~~~~~~~---------~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~  153 (259)
                      .+.    .++..++..         ....+|+++|+++.. .++...+..+++.+..      ..|+++|+||+|+... 
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~-  159 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTP-  159 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCH-
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCH-
Confidence            121    112222221         123578999999766 4688888887777754      2499999999998865 


Q ss_pred             cccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          154 DETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                       ..+..+..     .+...+..++.+++.+++.  +    ..++.+|++.|.+.++
T Consensus       160 -~e~~~~~~-----~i~~~l~~~~i~v~~~sa~--~----~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          160 -EECQQFKK-----QIMKEIQEHKIKIYEFPET--D----DEEENKLVKKIKDRLP  203 (274)
T ss_dssp             -HHHHHHHH-----HHHHHHHHTTCCCCCC-----------------CHHHHHTCS
T ss_pred             -HHHHHHHH-----HHHHHHHHcCCeEEcCCCC--C----ChhHHHHHHHHhcCCC
Confidence             44443322     3455555666665545433  2    2688888888877653

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.82  E-value=5.5e-19  Score=139.00  Aligned_cols=165  Identities=16%  Similarity=0.092  Sum_probs=104.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ...++|+++|.+|||||||+|+|++.......  .++.+.......+. .++  ..+.+|||||......          
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~----------   80 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQERFRT----------   80 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CCCSSEEEEEEEEE-ETTEEEEEEEEEECCSGGGCT----------
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEE-ECCEEEEEEEEECCCcHhhhh----------
Confidence            45689999999999999999999987653222  22333333333333 344  4799999999543221          


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                       .....+..+|++|+|+|++++.+.. ...++..+......  ..|+++|+||+|+.......         ......+.
T Consensus        81 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~~~~~---------~~~~~~~~  148 (196)
T 3tkl_A           81 -ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTKKVVD---------YTTAKEFA  148 (196)
T ss_dssp             -THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSC---------HHHHHHHH
T ss_pred             -hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccccccC---------HHHHHHHH
Confidence             1122345679999999998543322 23455555554332  34999999999987542111         12345566


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG  212 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~  212 (259)
                      ...+..++..++.  .+    .++.++++.+.+.+.+..
T Consensus       149 ~~~~~~~~~~Sa~--~g----~gv~~l~~~l~~~i~~~~  181 (196)
T 3tkl_A          149 DSLGIPFLETSAK--NA----TNVEQSFMTMAAEIKKRM  181 (196)
T ss_dssp             HHTTCCEEEECTT--TC----TTHHHHHHHHHHHHHHHC
T ss_pred             HHcCCcEEEEeCC--CC----CCHHHHHHHHHHHHHHHh
Confidence            6666665555443  22    789999999888776653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.82  E-value=2.3e-19  Score=139.18  Aligned_cols=163  Identities=15%  Similarity=0.120  Sum_probs=100.8

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI   93 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~   93 (259)
                      ....++|+++|.+|||||||+|+|++......  ..++.+.......+. .++  ..+.+|||||.....          
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~----------   72 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVE-INGEKVKLQIWDTAGQERFR----------   72 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---C--CTTTBSEEEEEEEEE-ETTEEEEEEEEEETTGGGCS----------
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCc--cCCCceeEEEEEEEE-ECCEEEEEEEEcCCCchhhh----------
Confidence            34568999999999999999999998875322  223333333333333 344  579999999954321          


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI  172 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (259)
                       ......+..+|++++|+|++++.+... ..++..+....   ...|+++|+||+|+....  ..       .......+
T Consensus        73 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~-------~~~~~~~~  139 (181)
T 3tw8_B           73 -TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPERK--VV-------ETEDAYKF  139 (181)
T ss_dssp             -SCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGGGC--CS-------CHHHHHHH
T ss_pred             -hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCchhc--cc-------CHHHHHHH
Confidence             122334677899999999985433322 23344443322   235999999999976431  11       11234445


Q ss_pred             HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ....+..++..++.  .+    .++.+|++.|.+.+.+
T Consensus       140 ~~~~~~~~~~~Sa~--~~----~gi~~l~~~l~~~~~~  171 (181)
T 3tw8_B          140 AGQMGIQLFETSAK--EN----VNVEEMFNCITELVLR  171 (181)
T ss_dssp             HHHHTCCEEECBTT--TT----BSHHHHHHHHHHHHHH
T ss_pred             HHHcCCeEEEEECC--CC----CCHHHHHHHHHHHHHH
Confidence            55555554444443  32    6899999998877654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.82  E-value=1.3e-19  Score=140.28  Aligned_cols=162  Identities=15%  Similarity=0.138  Sum_probs=97.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ...++|+++|.+|||||||+|+|++.........+.+.+.....  +. .++  ..+.+|||||.....       ... 
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~~-~~~~~~~~~l~Dt~G~~~~~-------~~~-   81 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI--IE-VSGQKIKLQIWDTAGQERFR-------AVT-   81 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEE--EE-ETTEEEEEEEEECTTGGGTC-------HHH-
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEE--EE-ECCeEEEEEEEECCCChHhh-------hhH-
Confidence            45689999999999999999999987753222222222222222  22 233  478999999954321       112 


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                         ......+|++|+|+|++++.+... ..++..+......  ..|+++|+||+|+.......         ...++.+.
T Consensus        82 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~---------~~~~~~~~  147 (179)
T 1z0f_A           82 ---RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQRDVT---------YEEAKQFA  147 (179)
T ss_dssp             ---HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSC---------HHHHHHHH
T ss_pred             ---HHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccC---------HHHHHHHH
Confidence               222345699999999985433222 3444445543322  34999999999986431111         12344555


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ...+..  ++..++..+    .++.+++..+.+.+.
T Consensus       148 ~~~~~~--~~~~Sa~~~----~gi~~l~~~l~~~i~  177 (179)
T 1z0f_A          148 EENGLL--FLEASAKTG----ENVEDAFLEAAKKIY  177 (179)
T ss_dssp             HHTTCE--EEECCTTTC----TTHHHHHHHHHHHHC
T ss_pred             HHcCCE--EEEEeCCCC----CCHHHHHHHHHHHHh
Confidence            555544  444444443    789999998877653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.82  E-value=5.7e-19  Score=139.95  Aligned_cols=162  Identities=12%  Similarity=0.092  Sum_probs=98.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ..++|+|+|.+|||||||+|+|++.........+.+.+...  ..+. ..  ...+.+|||||...           +..
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~~~~l~Dt~G~~~-----------~~~   72 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKV--KTIY-RNDKRIKLQIWDTAGLER-----------YRT   72 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEE--EEEE-ETTEEEEEEEEEECCSGG-----------GHH
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEE--EEEE-ECCeEEEEEEEECCCchh-----------hcc
Confidence            45899999999999999999999887532222222222222  2222 23  34899999999642           222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .....+..+|++|+|+|++++.+... ..++..+.....  ...|+++|+||+|+....  ..       .....+.+.+
T Consensus        73 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~--~~-------~~~~~~~~~~  141 (203)
T 1zbd_A           73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMEDER--VV-------SSERGRQLAD  141 (203)
T ss_dssp             HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--SSCEEEEEEECTTCTTSC--CS-------CHHHHHHHHH
T ss_pred             hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCccc--cc-------CHHHHHHHHH
Confidence            33445667899999999985433222 234444444321  234999999999987541  11       1123445556


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .++..++  ..++..+    .++.++++.|.+.+.+
T Consensus       142 ~~~~~~~--~~Sa~~~----~gi~~l~~~l~~~i~~  171 (203)
T 1zbd_A          142 HLGFEFF--EASAKDN----INVKQTFERLVDVICE  171 (203)
T ss_dssp             HHTCEEE--ECBTTTT----BSSHHHHHHHHHHHHH
T ss_pred             HCCCeEE--EEECCCC----CCHHHHHHHHHHHHHH
Confidence            6665443  4443333    6788888887766544

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.82  E-value=8.9e-20  Score=140.05  Aligned_cols=162  Identities=14%  Similarity=0.079  Sum_probs=97.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ...+|+++|++|||||||+|++++.........+.+.+......... .....+.+|||||....           ....
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~~-----------~~~~   72 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ-NELHKFLIWDTAGLERF-----------RALA   72 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGG-----------GGGT
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEEC-CeEEEEEEEcCCCchhh-----------hccc
Confidence            45899999999999999999999877433222222333222222111 12257899999997421           1112


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ......+|++++|+|++++.+... ..++..+......  ..|+++|+||+|+....  ..       .......+....
T Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~~--~v-------~~~~~~~~~~~~  141 (170)
T 1z0j_A           73 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCDLTDVR--EV-------MERDAKDYADSI  141 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TSEEEEEEECTTCGGGC--CS-------CHHHHHHHHHHT
T ss_pred             HhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECCcccccc--cc-------CHHHHHHHHHHc
Confidence            223456799999999985443333 3455555553222  34899999999987531  11       112344455555


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      +..+  +..++..+    .++.+|++.|.+.+
T Consensus       142 ~~~~--~~~Sa~~~----~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          142 HAIF--VETSAKNA----ININELFIEISRRI  167 (170)
T ss_dssp             TCEE--EECBTTTT----BSHHHHHHHHHHHC
T ss_pred             CCEE--EEEeCCCC----cCHHHHHHHHHHHH
Confidence            5443  44443333    78999999887654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.82  E-value=1.4e-18  Score=135.64  Aligned_cols=161  Identities=13%  Similarity=0.095  Sum_probs=101.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+|+++|.+|||||||+|++++...  ....   .|.......+. .++..+.+|||||..           .+...
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~---~t~~~~~~~~~-~~~~~~~~~Dt~G~~-----------~~~~~   78 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGEDV--DTIS---PTLGFNIKTLE-HRGFKLNIWDVGGQK-----------SLRSY   78 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCCC--SSCC---CCSSEEEEEEE-ETTEEEEEEEECCSH-----------HHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCC--Cccc---ccCccceEEEE-ECCEEEEEEECCCCH-----------hHHHH
Confidence            4678999999999999999999998772  2211   12223333333 467899999999953           23334


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .......+|++++|+|++++.+...  ...++......  ....|+++|+||+|+...  ...++..         ..+.
T Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~---------~~~~  145 (186)
T 1ksh_A           79 WRNYFESTDGLIWVVDSADRQRMQD--CQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQ---------EALE  145 (186)
T ss_dssp             GGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHH---------HHTT
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHH---------HHhC
Confidence            4556788999999999985543332  22223332221  123599999999998754  2222211         1111


Q ss_pred             --Hc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          175 --LC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       175 --~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                        .+ ...+.++..++..+    .++.++++.+.+.+.+.
T Consensus       146 ~~~~~~~~~~~~~~Sa~~~----~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          146 LDSIRSHHWRIQGCSAVTG----EDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             GGGCCSSCEEEEECCTTTC----TTHHHHHHHHHHHHHTC
T ss_pred             hhhccCCceEEEEeeCCCC----CCHHHHHHHHHHHHHhc
Confidence              11 12344566665554    79999999998888653

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.81  E-value=2.2e-19  Score=139.05  Aligned_cols=163  Identities=19%  Similarity=0.187  Sum_probs=102.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      +..+|+++|++|||||||+|+|++....... ..+++|.......+. .++..+.+|||||+..........  .+.. .
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~-~~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~--~~~~-~   77 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIH-IDGMPLHIIDTAGLREASDEVERI--GIER-A   77 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEE-ETTEEEEEEECCCCSCCSSHHHHH--HHHH-H
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceee-CCCCceeceeeEEEE-ECCeEEEEEECCCcccchhHHHHH--HHHH-H
Confidence            4578999999999999999999987642211 223444444333333 567789999999987542211111  1111 1


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      ...+..+|++++|+|++++.+..+..++..+.+....  ..|+++|+||+|+.... .   ++..            .  
T Consensus        78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~-~---~~~~------------~--  137 (172)
T 2gj8_A           78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPITVVRNKADITGET-L---GMSE------------V--  137 (172)
T ss_dssp             HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCEEEEEECHHHHCCC-C---EEEE------------E--
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhccc--CCCEEEEEECccCCcch-h---hhhh------------c--
Confidence            2234577999999999866665566666666654322  34999999999985431 0   0000            0  


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ....++..++..+    .++.+|++.|.+.+.
T Consensus       138 ~~~~~~~~SA~~g----~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          138 NGHALIRLSARTG----EGVDVLRNHLKQSMG  165 (172)
T ss_dssp             TTEEEEECCTTTC----TTHHHHHHHHHHHC-
T ss_pred             cCCceEEEeCCCC----CCHHHHHHHHHHHhh
Confidence            1233555555544    799999999877654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.81  E-value=4.1e-19  Score=141.18  Aligned_cols=164  Identities=16%  Similarity=0.135  Sum_probs=101.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ...++|+|+|.+|||||||+|+|++........  +..+.......+. .++  ..+.+|||||......          
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~----------   72 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYI--STIGVDFKIKTVE-LDGKTVKLQIWDTAGQERFRT----------   72 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCC--CSSCCCEEEEEEE-ETTEEEEEEEECCTTTTTTTC----------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEE-ECCEEEEEEEEeCCChHHHHH----------
Confidence            446899999999999999999999877532221  2222222222222 333  3799999999654321          


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                       .....+..+|++|+|+|++++.+... ..++..+......  ..|+++|+||+|+.......         ......+.
T Consensus        73 -~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~---------~~~~~~~~  140 (206)
T 2bcg_Y           73 -ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDKRVVE---------YDVAKEFA  140 (206)
T ss_dssp             -CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSC---------HHHHHHHH
T ss_pred             -HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccC---------HHHHHHHH
Confidence             12345667899999999985433322 2344445443322  34999999999987541111         11334455


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      ...+..++  ..++..+    .++.+|+..|.+.+.+.
T Consensus       141 ~~~~~~~~--~~Sa~~g----~gi~~l~~~l~~~i~~~  172 (206)
T 2bcg_Y          141 DANKMPFL--ETSALDS----TNVEDAFLTMARQIKES  172 (206)
T ss_dssp             HHTTCCEE--ECCTTTC----TTHHHHHHHHHHHHHHH
T ss_pred             HHcCCeEE--EEeCCCC----CCHHHHHHHHHHHHHHH
Confidence            55554443  3444333    78999999998877654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.81  E-value=5.7e-19  Score=138.44  Aligned_cols=166  Identities=12%  Similarity=0.096  Sum_probs=100.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC-----------CcEEEEEeCCCCCCCCC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD-----------GQVVNVIDTPGLFDSSA   84 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~-----------~~~~~liDTPG~~~~~~   84 (259)
                      .....+|+|+|.+|||||||+|+|++.........+.+.+.. ....+. ..           ...+.+|||||...   
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~Dt~G~~~---   82 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFR-EKRVVY-RANGPDGAVGRGQRIHLQLWDTAGLER---   82 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEEEE-CTTSCCCSSCCCEEEEEEEEEECCSGG---
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeee-eEEEEE-ecCCcccccccCcEEEEEEEeCCCcHH---
Confidence            345689999999999999999999976642221111111111 011122 22           24899999999632   


Q ss_pred             ChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC
Q 024985           85 DSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP  163 (259)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~  163 (259)
                              +..........+|++|+|+|++++.+... ..++..+..... ....|+++|+||+|+....  .+      
T Consensus        83 --------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~--~~------  145 (195)
T 3bc1_A           83 --------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQR--AV------  145 (195)
T ss_dssp             --------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGC--CS------
T ss_pred             --------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccc--cc------
Confidence                    22333455678899999999985433332 344444444321 1235999999999986431  11      


Q ss_pred             CCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          164 ECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                       ....++.+....+..++  ..++..+    .++.++++.|.+.+.+
T Consensus       146 -~~~~~~~~~~~~~~~~~--~~Sa~~~----~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          146 -KEEEARELAEKYGIPYF--ETSAANG----TNISHAIEMLLDLIMK  185 (195)
T ss_dssp             -CHHHHHHHHHHHTCCEE--ECCTTTC----TTHHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHcCCCEE--EEECCCC----CCHHHHHHHHHHHHHH
Confidence             11234455555555444  3443333    7899999988776643

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.81  E-value=1.2e-18  Score=136.03  Aligned_cols=163  Identities=15%  Similarity=0.124  Sum_probs=100.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+++|.+|||||||+|+|++.......  .+..+.......+. .++  ..+.+|||||...           +.
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~-----------~~   73 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS--NHTIGVEFGSKIIN-VGGKYVKLQIWDTAGQER-----------FR   73 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCSEEEEEEEEEE-ETTEEEEEEEEEECCSGG-----------GH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEE-ECCEEEEEEEEeCCCcHH-----------HH
Confidence            45689999999999999999999987652221  22222222222222 344  4789999999542           22


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      ......+..+|++|+|+|++++.+... ..++..+......  ..|+++|+||+|+.......         ......+.
T Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~---------~~~~~~~~  142 (186)
T 2bme_A           74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDADREVT---------FLEASRFA  142 (186)
T ss_dssp             HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSC---------HHHHHHHH
T ss_pred             HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccC---------HHHHHHHH
Confidence            334556778999999999985433222 2344444443222  35999999999986431111         11234444


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ...+..  ++..++..+    .++.++++.+...+.+
T Consensus       143 ~~~~~~--~~~~Sa~~~----~gi~~l~~~l~~~~~~  173 (186)
T 2bme_A          143 QENELM--FLETSALTG----ENVEEAFVQCARKILN  173 (186)
T ss_dssp             HHTTCE--EEECCTTTC----TTHHHHHHHHHHHHHH
T ss_pred             HHcCCE--EEEecCCCC----CCHHHHHHHHHHHHHH
Confidence            554443  444444443    7899999988776644

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.81  E-value=3e-20  Score=142.58  Aligned_cols=162  Identities=17%  Similarity=0.115  Sum_probs=95.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+|+++|++|||||||+|++++.........+.+.+....  .+. .++  ..+.+|||||....           ...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~D~~G~~~~-----------~~~   68 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQ--RVT-INEHTVKFEIWDTAGQERF-----------ASL   68 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEE--EEE-ETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE--EEE-ECCEEEEEEEEECCCChhh-----------hhh
Confidence            47899999999999999999998765322222222222222  222 233  37999999995421           111


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      .......+|++++|+|++++.+... ..++..+......  ..|+++|+||+|+....  ...+.    .......+...
T Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~--~~~~v----~~~~~~~~~~~  140 (170)
T 1ek0_A           69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDXLQEG--GERKV----AREEGEKLAEE  140 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGSS--CCCCS----CHHHHHHHHHH
T ss_pred             hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCccccc--cccCC----CHHHHHHHHHH
Confidence            2223457799999999985433322 2344444443322  34999999999987541  11110    11233444555


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      .+..  ++..++..+    .++.+|+..|.+.+
T Consensus       141 ~~~~--~~~~Sa~~~----~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          141 KGLL--FFETSAKTG----ENVNDVFLGIGEKI  167 (170)
T ss_dssp             HTCE--EEECCTTTC----TTHHHHHHHHHTTS
T ss_pred             cCCE--EEEEeCCCC----CCHHHHHHHHHHHH
Confidence            5544  344444433    78999999876543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.81  E-value=9.6e-19  Score=134.46  Aligned_cols=161  Identities=12%  Similarity=0.100  Sum_probs=99.7

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      .....+|+++|.+|||||||+|++++.....  .   ..|.......+. .++..+.+|||||...           +..
T Consensus         4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~---~~t~~~~~~~~~-~~~~~~~~~Dt~G~~~-----------~~~   66 (171)
T 1upt_A            4 MTREMRILILGLDGAGKTTILYRLQVGEVVT--T---IPTIGFNVETVT-YKNLKFQVWDLGGLTS-----------IRP   66 (171)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHSSCCC--C---CCCSSEEEEEEE-ETTEEEEEEEECCCGG-----------GGG
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCC--c---CCcCccceEEEE-ECCEEEEEEECCCChh-----------hhH
Confidence            3456899999999999999999998776421  1   122223333333 4578999999999642           222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      .....+..+|++++|+|++++.+...  ...++......  ....|+++|+||+|+...  ...+++.         ...
T Consensus        67 ~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~---------~~~  133 (171)
T 1upt_A           67 YWRCYYSNTDAVIYVVDSCDRDRIGI--SKSELVAMLEEEELRKAILVVFANKQDMEQA--MTSSEMA---------NSL  133 (171)
T ss_dssp             GGGGGCTTCSEEEEEEETTCCTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHH---------HHH
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhCCCEEEEEEECCCCcCC--CCHHHHH---------HHh
Confidence            23455678899999999985543322  22223332221  123599999999998765  2222111         111


Q ss_pred             --HHc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          174 --QLC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       174 --~~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                        ..+ ...+.++..++..+    .++.++++.+.+.+.+
T Consensus       134 ~~~~~~~~~~~~~~~Sa~~~----~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          134 GLPALKDRKWQIFKTSATKG----TGLDEAMEWLVETLKS  169 (171)
T ss_dssp             TGGGCTTSCEEEEECCTTTC----TTHHHHHHHHHHHHHT
T ss_pred             CchhccCCceEEEECcCCCC----cCHHHHHHHHHHHHhh
Confidence              111 12234555555544    7999999999887754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.81  E-value=1.5e-19  Score=160.72  Aligned_cols=189  Identities=14%  Similarity=0.197  Sum_probs=119.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCC---hHHH-HHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD---SEFV-SKE   92 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~---~~~~-~~~   92 (259)
                      ....+|+++|.+|+|||||+|+|++....... ...++|.+.....+. .++..+.||||||+......   .+.. ...
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~-~~~gtt~~~~~~~~~-~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFT-YNQQEFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-C------CTTSEEEE-ETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccC-CCCCeEEEEEEEEEE-ECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence            45689999999999999999999988743332 234455554434344 57789999999998643211   1111 111


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985           93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI  172 (259)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (259)
                      ...    +...+|++|+|+|++.+++..+..++..+.+ .+    .|+++|+||+|+.+......+++..     .++..
T Consensus       271 ~~~----~~~~ad~~llviD~~~~~~~~~~~~~~~~~~-~~----~~~ilv~NK~Dl~~~~~~~~~~~~~-----~~~~~  336 (456)
T 4dcu_A          271 ALK----AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-AG----KAVVIVVNKWDAVDKDESTMKEFEE-----NIRDH  336 (456)
T ss_dssp             HHH----HHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CEEEEEEECGGGSCCCSSHHHHHHH-----HHHHH
T ss_pred             HHH----HHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH-cC----CCEEEEEEChhcCCCchHHHHHHHH-----HHHHh
Confidence            111    2345699999999998899999888888776 33    4999999999998653222232221     22233


Q ss_pred             HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 024985          173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKK  226 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~  226 (259)
                      +...++.. ++..++..+    .++.+|++.+.+.+.....+.-+..+...+++
T Consensus       337 ~~~~~~~~-~~~~SA~~g----~gv~~l~~~i~~~~~~~~~~~~t~~ln~~l~~  385 (456)
T 4dcu_A          337 FQFLDYAP-ILFMSALTK----KRIHTLMPAIIKASENHSLRVQTNVLNDVIMD  385 (456)
T ss_dssp             CGGGTTSC-EEECCTTTC----TTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             cccCCCCC-EEEEcCCCC----cCHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence            33223322 333444333    78999999999998887776666655555543

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.81  E-value=1.2e-19  Score=139.23  Aligned_cols=162  Identities=12%  Similarity=0.076  Sum_probs=95.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ...+|+++|.+|||||||+|+|++.........+.+.+.......+. ..+..+.+|||||....           ....
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~-----------~~~~   72 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQERY-----------HSLA   72 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGG-----------GGGH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCcHHh-----------hhhh
Confidence            35799999999999999999999766432222222222222222111 12357999999995432           1112


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ......+|++++|+|++++.+... ..++..+......  ..|+++|+||+|+.......         ......+....
T Consensus        73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~Dl~~~~~~~---------~~~~~~~~~~~  141 (170)
T 1r2q_A           73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADLANKRAVD---------FQEAQSYADDN  141 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSC---------HHHHHHHHHHT
T ss_pred             HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccccccC---------HHHHHHHHHHc
Confidence            223457799999999985433222 3344444443222  34899999999986431111         11334444454


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      +..  ++..++..+    .++.+|++.|.+.+
T Consensus       142 ~~~--~~~~Sa~~g----~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          142 SLL--FMETSAKTS----MNVNEIFMAIAKKL  167 (170)
T ss_dssp             TCE--EEECCTTTC----TTHHHHHHHHHHTS
T ss_pred             CCe--EEEEeCCCC----CCHHHHHHHHHHHH
Confidence            443  444444433    78999999987654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.81  E-value=3.5e-19  Score=138.30  Aligned_cols=164  Identities=18%  Similarity=0.142  Sum_probs=98.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+|+++|.+|+|||||+|++++.........+.+.+.......+. .....+.+|||||....           ...
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~-----------~~~   77 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERY-----------HSL   77 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEET-TEEEEEEEEECCCSGGG-----------GGG
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCChhh-----------hhh
Confidence            345899999999999999999999877533222222222222222111 11347999999995421           111


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      .......+|++|+|+|++++.+.. ...++..+......  ..|+++|+||+|+.......         ....+.+...
T Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~---------~~~~~~~~~~  146 (181)
T 2efe_B           78 APMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVMALAGNKSDLLDARKVT---------AEDAQTYAQE  146 (181)
T ss_dssp             THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSC---------HHHHHHHHHH
T ss_pred             hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccccCC---------HHHHHHHHHH
Confidence            222345679999999998544322 23455555543222  34899999999987541111         1234445555


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .+..  ++..++..+    .++.+|++.|.+.+.
T Consensus       147 ~~~~--~~~~Sa~~g----~gi~~l~~~l~~~~~  174 (181)
T 2efe_B          147 NGLF--FMETSAKTA----TNVKEIFYEIARRLP  174 (181)
T ss_dssp             TTCE--EEECCSSSC----TTHHHHHHHHHHTCC
T ss_pred             cCCE--EEEEECCCC----CCHHHHHHHHHHHHH
Confidence            5544  444444443    789999998877553

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.81  E-value=3.3e-19  Score=148.29  Aligned_cols=178  Identities=16%  Similarity=0.175  Sum_probs=112.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~--~~~~~~~~~   96 (259)
                      .++|+++|.+|||||||+|+|+|... ..+ ..+++|.......+. ..+..+.+|||||+.+......  ...+.+...
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~-~~~g~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVG-NWAGVTVERKEGQFS-TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCE-EEE-ECTTSSSEEEEEEEE-CSSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCc-ccC-CCCCeeEEEEEEEEE-eCCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence            47999999999999999999999874 222 245666666655555 4677999999999987542110  111222222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      . .....+|++|+|+|+++ . .....+...+.+. +    .|+++|+||+|+...  ..+        ......+.+..
T Consensus        80 ~-~~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~-~----~p~ivv~NK~Dl~~~--~~~--------~~~~~~l~~~l  141 (274)
T 3i8s_A           80 Y-ILSGDADLLINVVDASN-L-ERNLYLTLQLLEL-G----IPCIVALNMLDIAEK--QNI--------RIEIDALSARL  141 (274)
T ss_dssp             H-HHHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH-T----CCEEEEEECHHHHHH--TTE--------EECHHHHHHHH
T ss_pred             H-HhhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc-C----CCEEEEEECccchhh--hhH--------HHHHHHHHHhc
Confidence            1 12357899999999983 2 2334455555542 3    399999999997643  111        12344555666


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC--CCCCCHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG--GQPYSDEIFAE  223 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~--~~~~~~~~~~~  223 (259)
                      +.+++.  .++..    ..|+.+|++.|.+.+....  ...|..++...
T Consensus       142 g~~~i~--~SA~~----g~gi~el~~~i~~~~~~~~~~~~~~~~~l~~~  184 (274)
T 3i8s_A          142 GCPVIP--LVSTR----GRGIEALKLAIDRYKANENVELVHYAQPLLNE  184 (274)
T ss_dssp             TSCEEE--CCCGG----GHHHHHHHHHHHTCCCCCCCCCCCCCHHHHHH
T ss_pred             CCCEEE--EEcCC----CCCHHHHHHHHHHHHhcCCCcccCCCHHHHHH
Confidence            655444  34333    3899999999988775432  22355544433

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.81  E-value=1e-19  Score=160.92  Aligned_cols=190  Identities=14%  Similarity=0.188  Sum_probs=114.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh---HHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS---EFVSKEI   93 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~---~~~~~~~   93 (259)
                      ...++|+++|++|||||||+|+|++....... ...++|.+.....+. .++..+.||||||+.+.....   +.+. .+
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~-~~~gtT~d~~~~~~~-~~~~~~~l~DT~G~~~~~~~~~~~e~~~-~~  249 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFT-YNQQEFVIVDTAGMRKKGKVYETTEKYS-VL  249 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEE-ETTEEEEETTHHHHTCBTTBCCCCSHHH-HH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeec-CCCCceeeeeEEEEE-ECCeEEEEEECCCcCcCccccchHHHHH-HH
Confidence            35689999999999999999999998753222 234555555444444 577889999999985432210   1111 11


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                       .. ..++..+|++|+|+|++++.+.++..++..+.. .+    .|+++|+||+|+.+......+++..     .+...+
T Consensus       250 -~~-~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~-~~----~~iiiv~NK~Dl~~~~~~~~~~~~~-----~~~~~l  317 (436)
T 2hjg_A          250 -RA-LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-AG----KAVVIVVNKWDAVDKDESTMKEFEE-----NIRDHF  317 (436)
T ss_dssp             -HH-HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CEEEEEEECGGGSCCCTTHHHHHHH-----HHHHHC
T ss_pred             -HH-HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH-cC----CcEEEEEECccCCCcchHHHHHHHH-----HHHHhc
Confidence             11 112345699999999998899888877776654 23    4999999999998652111222211     122222


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKK  226 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~  226 (259)
                      ....+.. ++..++..+    .++.+|++.+.+.+.....+.-+..+...+++
T Consensus       318 ~~~~~~~-~~~~SA~tg----~~v~~l~~~i~~~~~~~~~~~~t~~ln~~l~~  365 (436)
T 2hjg_A          318 QFLDYAP-ILFMSALTK----KRIHTLMPAIIKASENHSLRVQTNVLNDVIMD  365 (436)
T ss_dssp             GGGTTSC-EEECCTTTC----TTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             ccCCCCC-EEEEecccC----CCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence            2222322 333344333    78999999999988877665555555544443

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.81  E-value=3.4e-19  Score=138.30  Aligned_cols=168  Identities=14%  Similarity=0.082  Sum_probs=93.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEI   93 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~~~liDTPG~~~~~~~~~~~~~~~   93 (259)
                      .....+|+++|.+|||||||+|++++........  +..+.......+...  ....+.+|||||..           .+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----------~~   71 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYK--ATIGADFLTKEVTVDGDKVATMQVWDTAGQE-----------RF   71 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEECCSSSCCEEEEEECCC----------------
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccC--CccceEEEEEEEEEcCCcEEEEEEEECCCCh-----------Hh
Confidence            3456899999999999999999999876422211  112222222222221  13478999999943           22


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHH
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLK  170 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~  170 (259)
                      ..........+|++|+|+|++++.+... ..++..+......  ....|+++|+||+|+......        .......
T Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--------v~~~~~~  143 (182)
T 1ky3_A           72 QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI--------VSEKSAQ  143 (182)
T ss_dssp             -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC--------SCHHHHH
T ss_pred             hhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccccc--------CCHHHHH
Confidence            2333456678899999999985433222 3344444443320  123499999999998643100        0112233


Q ss_pred             HHHHH-cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          171 EILQL-CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       171 ~~~~~-~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .+... .+..++..++.  .+    .++.++++.|.+.+.+
T Consensus       144 ~~~~~~~~~~~~~~Sa~--~~----~gi~~l~~~l~~~~~~  178 (182)
T 1ky3_A          144 ELAKSLGDIPLFLTSAK--NA----INVDTAFEEIARSALQ  178 (182)
T ss_dssp             HHHHHTTSCCEEEEBTT--TT----BSHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCeEEEEecC--CC----CCHHHHHHHHHHHHHH
Confidence            44442 22344444433  32    6899999988776543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.81  E-value=1.8e-18  Score=134.15  Aligned_cols=164  Identities=14%  Similarity=0.092  Sum_probs=98.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+++|.+|||||||+|+|++........ .+..+.......+. .++  ..+.+|||||...           +.
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~-----------~~   74 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLD-VDGVKVKLQMWDTAGQER-----------FR   74 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCCCSCEEEEEEEE-ETTEEEEEEEEECCCC---------------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCc-CCceeeEEEEEEEE-ECCEEEEEEEEeCCCcHH-----------HH
Confidence            345899999999999999999999877532211 12222222222222 344  3789999999542           22


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      .........+|++++|+|++++.+..+ ..++..+.....  ...|+++|+||+|+.......         ......+.
T Consensus        75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~  143 (180)
T 2g6b_A           75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVK---------REDGEKLA  143 (180)
T ss_dssp             ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSC---------HHHHHHHH
T ss_pred             HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcccccC---------HHHHHHHH
Confidence            223445567899999999985433222 344555555332  234999999999987541111         11334455


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ...+..++  ..++..+    .++.++++.+.+.+.+
T Consensus       144 ~~~~~~~~--~~Sa~~~----~gi~~l~~~l~~~~~~  174 (180)
T 2g6b_A          144 KEYGLPFM--ETSAKTG----LNVDLAFTAIAKELKR  174 (180)
T ss_dssp             HHHTCCEE--ECCTTTC----TTHHHHHHHHHHHHHC
T ss_pred             HHcCCeEE--EEeCCCC----CCHHHHHHHHHHHHHH
Confidence            55554443  3444333    7899999998887754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.81  E-value=1.4e-19  Score=142.44  Aligned_cols=164  Identities=16%  Similarity=0.060  Sum_probs=99.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+|+++|.+|+|||||+|+|++...........+.+......... .....+.+|||||.....           ..
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~-----------~~   88 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG-NELHKFLIWDTAGQERFH-----------SL   88 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECS-SSEEEEEEEEECCSGGGG-----------GG
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeC-CEEEEEEEEcCCCchhhH-----------hh
Confidence            456899999999999999999999877432222223333322222211 234589999999954321           11


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ....+..+|++|+|+|+++..+... ..++..+.....  ...|+++|+||+|+.......         ....+.+...
T Consensus        89 ~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~v~---------~~~~~~~~~~  157 (192)
T 2fg5_A           89 APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAIAGNKCDLSDIREVP---------LKDAKEYAES  157 (192)
T ss_dssp             THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSC---------HHHHHHHHHT
T ss_pred             hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccccC---------HHHHHHHHHH
Confidence            1223456799999999985433222 344555544322  134999999999986421111         1234455555


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .+..+  +..++..+    .++.+|++.|.+.+.
T Consensus       158 ~~~~~--~~~Sa~~~----~gi~~l~~~l~~~i~  185 (192)
T 2fg5_A          158 IGAIV--VETSAKNA----INIEELFQGISRQIP  185 (192)
T ss_dssp             TTCEE--EECBTTTT----BSHHHHHHHHHHTCC
T ss_pred             cCCEE--EEEeCCCC----cCHHHHHHHHHHHHH
Confidence            55443  44444333    789999999887654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.81  E-value=1.7e-19  Score=159.68  Aligned_cols=165  Identities=18%  Similarity=0.222  Sum_probs=104.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      ++|+++|++|||||||+|+|++...... ...+++|.+.....+. .++..+.+|||||+....  ...+...+......
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v-~~~~g~T~d~~~~~~~-~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~   77 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV-EDEEGVTRDPVQDTVE-WYGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN   77 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEE-ETTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcee-cCCCCCccceeeEEEE-ECCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence            5899999999999999999999874322 2346677776666555 578899999999987421  11112234444455


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN-  178 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  178 (259)
                      ++..+|++|+|+|++.+++..+..+.+++.+ .+    .|+++|+||+|+...    ....       ...++. .++. 
T Consensus        78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~-~~----~p~ilv~NK~D~~~~----~~~~-------~~~~~~-~lg~~  140 (439)
T 1mky_A           78 MIREADLVLFVVDGKRGITKEDESLADFLRK-ST----VDTILVANKAENLRE----FERE-------VKPELY-SLGFG  140 (439)
T ss_dssp             HHTTCSEEEEEEETTTCCCHHHHHHHHHHHH-HT----CCEEEEEESCCSHHH----HHHH-------THHHHG-GGSSC
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEeCCCCccc----cHHH-------HHHHHH-hcCCC
Confidence            6678899999999988888888777777765 23    499999999996421    0100       001221 2332 


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      .++.+++.  .+    .|+.+|++.+.+.+++.
T Consensus       141 ~~~~iSA~--~g----~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          141 EPIPVSAE--HN----INLDTMLETIIKKLEEK  167 (439)
T ss_dssp             SCEECBTT--TT----BSHHHHHHHHHHHHHHT
T ss_pred             CEEEEecc--CC----CCHHHHHHHHHHhcccc
Confidence            33333333  32    78999999998888753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.81  E-value=1.9e-19  Score=138.22  Aligned_cols=162  Identities=12%  Similarity=0.107  Sum_probs=97.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|++|+|||||+|++++.......  .++.+.......+. .++  ..+.+|||||.......          
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~~~~~~----------   68 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVD-INGKKVKLQIWDTAGQERFRTI----------   68 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEE-SSSCEEEEEEECCTTGGGTSCC----------
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEE-ECCEEEEEEEEeCCCChhhhhh----------
Confidence            3579999999999999999999987642221  12222223223233 233  47899999996432211          


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                       .......+|++++|+|++++.+... ..++..+......  ..|+++|+||+|+.... ..         ......+.+
T Consensus        69 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~-~~---------~~~~~~~~~  135 (170)
T 1g16_A           69 -TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETRV-VT---------ADQGEALAK  135 (170)
T ss_dssp             -CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTCC-SC---------HHHHHHHHH
T ss_pred             -HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCCcCc-cC---------HHHHHHHHH
Confidence             1223456799999999984433222 3455555553322  34999999999984321 11         123345555


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      ..+..++..++  ..+    .++.++++.+.+.+.+.
T Consensus       136 ~~~~~~~~~Sa--~~~----~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          136 ELGIPFIESSA--KND----DNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             HHTCCEEECBT--TTT----BSHHHHHHHHHHHHHHT
T ss_pred             HcCCeEEEEEC--CCC----CCHHHHHHHHHHHHHHH
Confidence            55655444443  332    68999999998877653

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.80  E-value=5.7e-19  Score=146.60  Aligned_cols=166  Identities=17%  Similarity=0.147  Sum_probs=106.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      .++|+|+|++|||||||+|+|+|... ..+ ..++.|.......+. ..+..+.+|||||+++.......  ..+... .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~-~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~-~   76 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVG-NWPGVTVEKKEGIME-YREKEFLVVDLPGIYSLTAHSID--ELIARN-F   76 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCE-EEE-ECTTSSCEEEEEEEE-ETTEEEEEEECCCCSCCCSSCHH--HHHHHH-H
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCc-ccC-CCCCeEEEeeEEEEE-ECCceEEEEeCCCccccccCCHH--HHHHHH-h
Confidence            47999999999999999999999875 222 245566655555444 56778999999998865432211  111111 1


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN  178 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (259)
                      .....+|++++|+|+++ . .....++..+.+. +   ..|+++|+||+|+...  .        ........+.+..+.
T Consensus        77 ~~~~~~d~vi~v~D~~~-~-~~~~~~~~~~~~~-~---~~p~ilv~NK~Dl~~~--~--------~~~~~~~~l~~~lg~  140 (271)
T 3k53_A           77 ILDGNADVIVDIVDSTC-L-MRNLFLTLELFEM-E---VKNIILVLNKFDLLKK--K--------GAKIDIKKMRKELGV  140 (271)
T ss_dssp             HHTTCCSEEEEEEEGGG-H-HHHHHHHHHHHHT-T---CCSEEEEEECHHHHHH--H--------TCCCCHHHHHHHHSS
T ss_pred             hhccCCcEEEEEecCCc-c-hhhHHHHHHHHhc-C---CCCEEEEEEChhcCcc--c--------ccHHHHHHHHHHcCC
Confidence            12357899999999983 2 2223333333332 2   1499999999997632  1        111235566666665


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVNSVILENG  212 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~  212 (259)
                      .++..  ++..+    .|+.+|++.+...+....
T Consensus       141 ~~~~~--Sa~~g----~gi~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          141 PVIPT--NAKKG----EGVEELKRMIALMAEGKV  168 (271)
T ss_dssp             CEEEC--BGGGT----BTHHHHHHHHHHHHHTCC
T ss_pred             cEEEE--EeCCC----CCHHHHHHHHHHHHhccc
Confidence            54433  33333    799999999999887653

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.80  E-value=3.4e-18  Score=140.87  Aligned_cols=164  Identities=18%  Similarity=0.158  Sum_probs=105.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ..++|+|+|.+|||||||+|+|+|......  ..+++|.......+. ..+..+.+|||||.+.......  .+.+....
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~--~~pg~tv~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~   78 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYVA--NWPGVTVEKKEGVFT-YKGYTINLIDLPGTYSLGYSSI--DEKIARDY   78 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEEE--ECTTSCCEEEEEEEE-ETTEEEEEEECCCCSSCCSSSH--HHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCceEEEEEEEEE-ECCeEEEEEECCCcCccCCCCH--HHHHHHHH
Confidence            357899999999999999999999875322  234666665555444 4678999999999886543221  11121111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      . ....+|++++|+|+++ +.. ...++..+.+ .+    .|+++|+||+|+....          ........+.+..+
T Consensus        79 ~-~~~~~d~ii~V~D~t~-~~~-~~~~~~~l~~-~~----~pvilv~NK~Dl~~~~----------~i~~~~~~l~~~lg  140 (258)
T 3a1s_A           79 L-LKGDADLVILVADSVN-PEQ-SLYLLLEILE-ME----KKVILAMTAIDEAKKT----------GMKIDRYELQKHLG  140 (258)
T ss_dssp             H-HHSCCSEEEEEEETTS-CHH-HHHHHHHHHT-TT----CCEEEEEECHHHHHHT----------TCCBCHHHHHHHHC
T ss_pred             H-hhcCCCEEEEEeCCCc-hhh-HHHHHHHHHh-cC----CCEEEEEECcCCCCcc----------chHHHHHHHHHHcC
Confidence            1 1147799999999983 322 2233333433 22    4999999999976431          11223556666666


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .+++..  ++..+    .|+.+|++.+.+....
T Consensus       141 ~~vi~~--SA~~g----~gi~el~~~i~~~~~~  167 (258)
T 3a1s_A          141 IPVVFT--SSVTG----EGLEELKEKIVEYAQK  167 (258)
T ss_dssp             SCEEEC--CTTTC----TTHHHHHHHHHHHHHS
T ss_pred             CCEEEE--EeeCC----cCHHHHHHHHHHHhhc
Confidence            554443  33333    7999999999887763

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.80  E-value=1.9e-18  Score=136.50  Aligned_cols=160  Identities=12%  Similarity=0.100  Sum_probs=96.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC----------------------------
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG----------------------------   68 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~----------------------------   68 (259)
                      ....+|+++|.+|||||||+|+|++........  +..........+. .++                            
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTN--TTIGASFCTYVVN-LNDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCC--CCCSCEEEEEEEE-TTC----------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcC--ccccceeEEEEEE-ecCcccccccccccccccccccccccccccc
Confidence            356899999999999999999999887432111  1111112111111 122                            


Q ss_pred             -----------cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccc
Q 024985           69 -----------QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKV  136 (259)
Q Consensus        69 -----------~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~  136 (259)
                                 ..+.||||||......           ........+|++|+|+|++++.+..+ ..++..+....+   
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---  147 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN---  147 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---
T ss_pred             ccccccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC---
Confidence                       6799999999543221           11223456799999999985533333 334444444333   


Q ss_pred             cCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          137 FDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       137 ~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                       .|+++|+||+| .......         ...+..++...+..++..++.  .+    .++.+|++.|.+.+.+
T Consensus       148 -~piilv~NK~D-~~~~~~~---------~~~~~~~~~~~~~~~~~~Sa~--~~----~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          148 -YIIILVANKID-KNKFQVD---------ILEVQKYAQDNNLLFIQTSAK--TG----TNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             -CEEEEEEECTT-CC-CCSC---------HHHHHHHHHHTTCEEEEECTT--TC----TTHHHHHHHHHHHHHH
T ss_pred             -CcEEEEEECCC-cccccCC---------HHHHHHHHHHcCCcEEEEecC--CC----CCHHHHHHHHHHHHHH
Confidence             59999999999 4321111         123445555555544444443  33    7899999998877654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.80  E-value=5.8e-19  Score=137.45  Aligned_cols=163  Identities=13%  Similarity=0.093  Sum_probs=80.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+++|.+|||||||+|++++.......  .++.+.......+. .++  ..+.+|||||...           +.
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~-----------~~   71 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTIE-LDGKRIKLQIWDTAGQER-----------FR   71 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CH--HHHHCEEEEEEEEE-ETTEEEEEEEEEC------------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCcccceeEEEEEE-ECCEEEEEEEEcCCCChh-----------hh
Confidence            34689999999999999999999976542111  11122222222232 344  5799999999542           22


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      ......+..+|++|+|+|++++.+... ..++..+......  ..|+++|+||+|+.......         ......+.
T Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~v~---------~~~~~~~~  140 (183)
T 2fu5_C           72 TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVNDKRQVS---------KERGEKLA  140 (183)
T ss_dssp             --CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEEC--CCSCCCSC---------HHHHHHHH
T ss_pred             hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccCCccCcCC---------HHHHHHHH
Confidence            233455678899999999985433222 2344444443222  34999999999987541111         12344555


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ...+..  ++..++..+    .++.+++..|.+.+.+
T Consensus       141 ~~~~~~--~~~~Sa~~~----~~i~~l~~~l~~~i~~  171 (183)
T 2fu5_C          141 LDYGIK--FMETSAKAN----INVENAFFTLARDIKA  171 (183)
T ss_dssp             HHHTCE--EEECCC-------CCHHHHHHHHHHHHHH
T ss_pred             HHcCCe--EEEEeCCCC----CCHHHHHHHHHHHHHH
Confidence            555544  444444443    7899999988776653

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.80  E-value=3.8e-19  Score=139.85  Aligned_cols=164  Identities=15%  Similarity=0.050  Sum_probs=96.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ...+|+|+|.+|||||||+|+|++.........+.+.+.......+. ..+..+.+|||||.......       .    
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~-------~----   91 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG-TAAVKAQIWDTAGLERYRAI-------T----   91 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEET-TEEEEEEEEEESCCCTTCTT-------H----
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCCchhhhhh-------h----
Confidence            35899999999999999999999877532222222222222211111 12347899999997653221       1    


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+..+|++|+|+|++++.+... ..++..+.....  ...|+++|+||+|+....  ..       .....+.+....
T Consensus        92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~--~~-------~~~~~~~~~~~~  160 (193)
T 2oil_A           92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE--ATIVVMLVGNKSDLSQAR--EV-------PTEEARMFAENN  160 (193)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC--TTCEEEEEEECGGGGGGC--CS-------CHHHHHHHHHHT
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECCCccccc--cc-------CHHHHHHHHHHc
Confidence            123456799999999984433221 234444433221  235999999999986431  10       112344455555


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +..++..  ++..+    .++.+|++.|.+.+.+
T Consensus       161 ~~~~~~~--Sa~~~----~gi~~l~~~l~~~i~~  188 (193)
T 2oil_A          161 GLLFLET--SALDS----TNVELAFETVLKEIFA  188 (193)
T ss_dssp             TCEEEEE--CTTTC----TTHHHHHHHHHHHHHH
T ss_pred             CCEEEEE--eCCCC----CCHHHHHHHHHHHHHH
Confidence            5444444  33333    7899999988776643

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.80  E-value=1.4e-18  Score=134.46  Aligned_cols=165  Identities=16%  Similarity=0.077  Sum_probs=98.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+++|++|||||||+|++++........  +..+.......+. .++  ..+.+|||||...           +.
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~   70 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLF--HTIGVEFLNKDLE-VDGHFVTMQIWDTAGQER-----------FR   70 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEE-ETTEEEEEEEEECCCCGG-----------GH
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CceeeeEEEEEEE-ECCEEEEEEEEeCCCchh-----------hh
Confidence            346899999999999999999999776422211  1122222222222 344  3899999999532           23


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE  171 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (259)
                      .........+|++++|+|++++.+... ..++..+......  ....|+++|+||+|+.... ..         ......
T Consensus        71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~---------~~~~~~  140 (177)
T 1wms_A           71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VS---------TEEAQA  140 (177)
T ss_dssp             HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SC---------HHHHHH
T ss_pred             hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-cC---------HHHHHH
Confidence            334456678899999999985433222 3345555443321  1234999999999987321 11         112334


Q ss_pred             HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +...... ..++..++..+    .++.++++.+.+.+.+
T Consensus       141 ~~~~~~~-~~~~~~Sa~~~----~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          141 WCRDNGD-YPYFETSAKDA----TNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHTTC-CCEEECCTTTC----TTHHHHHHHHHHHHHT
T ss_pred             HHHhcCC-ceEEEEeCCCC----CCHHHHHHHHHHHHHh
Confidence            4442222 22444444443    7899999998777654

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.80  E-value=3e-18  Score=132.17  Aligned_cols=165  Identities=16%  Similarity=0.114  Sum_probs=92.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ...++|+++|++|||||||+|+|++...... ..+.+.+......  . .++  ..+.+|||||....         ...
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~--~-~~~~~~~~~~~D~~g~~~~---------~~~   68 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTL--T-VDGEDTTLVVVDTWEAEKL---------DKS   68 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEE--E-ETTEEEEEEEECCC----------------C
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEE--E-ECCEEEEEEEEecCCCCcc---------chh
Confidence            4568999999999999999999998875322 2233333322222  2 333  37899999996531         011


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      ......+..+|++++|+|++++.+... ..++..+.... .....|+++|+||+|+.....-..         ...+.+.
T Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~piilv~NK~Dl~~~~~v~~---------~~~~~~~  138 (175)
T 2nzj_A           69 WSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTH-QADHVPIILVGNKADLARCREVSV---------EEGRACA  138 (175)
T ss_dssp             HHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCH---------HHHHHHH
T ss_pred             hhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-ccCCCCEEEEEEChhhccccccCH---------HHHHHHH
Confidence            112334567899999999984433222 23444444321 112359999999999875411111         1223344


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ...+..  ++..++..+    .++.+|++.|.+.+..
T Consensus       139 ~~~~~~--~~~~Sa~~g----~gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          139 VVFDCK--FIETSATLQ----HNVAELFEGVVRQLRL  169 (175)
T ss_dssp             HHHTSE--EEECBTTTT----BSHHHHHHHHHHHHHH
T ss_pred             HHcCCe--EEEEecCCC----CCHHHHHHHHHHHHHH
Confidence            444443  344444333    7899999998776643

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.80  E-value=3.6e-19  Score=139.92  Aligned_cols=165  Identities=12%  Similarity=0.045  Sum_probs=100.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ...+|+|+|.+|||||||+|+|++.........+.+.+......... ..+..+.||||||..           .+....
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~-----------~~~~~~   89 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRH-EKRVKLQIWDTAGQE-----------RYRTIT   89 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEET-TTTEEEEEECHHHHH-----------HCHHHH
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEEC-CEEEEEEEEeCCChH-----------HHHHHH
Confidence            45899999999999999999999766422211122222222222111 234589999999932           233333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+..+|++|+|+|++++.+.. ...++..+......  ..|+++|+||+|+......         .....+.+....
T Consensus        90 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~---------~~~~~~~~~~~~  158 (191)
T 3dz8_A           90 TAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD--NAQVILVGNKCDMEEERVV---------PTEKGQLLAEQL  158 (191)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCS---------CHHHHHHHHHHH
T ss_pred             HHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCcccccc---------CHHHHHHHHHHc
Confidence            44566789999999998442222 23455555543322  3499999999998643111         112344555555


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      +..+  |..++..+    .++.++++.|.+.+.+.
T Consensus       159 ~~~~--~~~Sa~~~----~gi~~l~~~l~~~i~~~  187 (191)
T 3dz8_A          159 GFDF--FEASAKEN----ISVRQAFERLVDAICDK  187 (191)
T ss_dssp             TCEE--EECBTTTT----BSHHHHHHHHHHHHHHH
T ss_pred             CCeE--EEEECCCC----CCHHHHHHHHHHHHHHh
Confidence            5544  44444333    78999999988877654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.80  E-value=6.3e-19  Score=140.58  Aligned_cols=163  Identities=12%  Similarity=0.107  Sum_probs=97.8

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI   93 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~   93 (259)
                      ....++|+++|++|||||||+|+|++.......  .++.+.......+. .++  ..+.+|||||......         
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~---------   84 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVD-INGKKVKLQLWDTAGQERFRT---------   84 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSS--SCCCSCCEEEEEEE-ETTEEEEEEEECCTTGGGGTC---------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcccceEEEEEEE-ECCEEEEEEEEeCCCcHHHHH---------
Confidence            345689999999999999999999977642222  12223233333333 344  4799999999643221         


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI  172 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (259)
                        .....+..+|++|+|+|++++.+... ..++..+......  ..|+++|+||+|+...  ..        .......+
T Consensus        85 --~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~--~~--------~~~~~~~~  150 (213)
T 3cph_A           85 --ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETR--VV--------TADQGEAL  150 (213)
T ss_dssp             --CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT--CSEEEEEEECTTCSSC--CS--------CHHHHHHH
T ss_pred             --HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccc--cc--------CHHHHHHH
Confidence              11223457799999999984433222 3455555543322  3499999999998432  11        11233445


Q ss_pred             HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ....+..++..++  ..+    .++.+|+..|.+.+.+
T Consensus       151 ~~~~~~~~~~~Sa--~~~----~gi~~l~~~l~~~~~~  182 (213)
T 3cph_A          151 AKELGIPFIESSA--KND----DNVNEIFFTLAKLIQE  182 (213)
T ss_dssp             HHHHTCCEEECBT--TTT----BSSHHHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeC--CCC----CCHHHHHHHHHHHHHH
Confidence            5555554444443  332    6889999888776654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.80  E-value=3.1e-19  Score=140.47  Aligned_cols=166  Identities=13%  Similarity=0.146  Sum_probs=95.5

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHH
Q 024985           15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKE   92 (259)
Q Consensus        15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~   92 (259)
                      ......+|+++|.+|||||||+|+|++........  +..+.......+. .++  ..+.+|||||....       ...
T Consensus        22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~~-------~~~   91 (192)
T 2il1_A           22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACK--STVGVDFKIKTVE-LRGKKIRLQIWDTAGQERF-------NSI   91 (192)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEE-ETTEEEEEEEEEECCSGGG-------HHH
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCC--CccceeEEEEEEE-ECCeEEEEEEEeCCCcHHH-------HHH
Confidence            34456899999999999999999999877532221  2222233333333 333  47899999995421       111


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985           93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE  171 (259)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (259)
                      ..    ..+..+|++|+|+|++++.+..+ ..++..+......  ..|+++|+||+|+....  .+       .......
T Consensus        92 ~~----~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilV~NK~Dl~~~~--~v-------~~~~~~~  156 (192)
T 2il1_A           92 TS----AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCETDR--EI-------TRQQGEK  156 (192)
T ss_dssp             HH----HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGC--CS-------CHHHHHH
T ss_pred             HH----HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccccc--cc-------CHHHHHH
Confidence            12    22335699999999985443333 3344555543222  34999999999986431  11       0112334


Q ss_pred             HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +.....+ ..++..++..+    .++.++++.|.+.+.+
T Consensus       157 ~~~~~~~-~~~~~~SA~~g----~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          157 FAQQITG-MRFCEASAKDN----FNVDEIFLKLVDDILK  190 (192)
T ss_dssp             HHHTSTT-CEEEECBTTTT----BSHHHHHHHHHHHHHH
T ss_pred             HHHhcCC-CeEEEEeCCCC----CCHHHHHHHHHHHHHH
Confidence            4444322 23444444433    7899999998776653

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.80  E-value=1e-18  Score=136.55  Aligned_cols=161  Identities=18%  Similarity=0.130  Sum_probs=96.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|++|||||||+|+|++......   ..+++......... .++.  .+.+|||||.......       ...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~-------~~~   71 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDE---YDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAM-------RDQ   71 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCC---CCTTCCEEEEEEEE-ETTEEEEEEEEECCCC---CTT-------HHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCCchheEEEEEE-ECCcEEEEEEEECCCcHHHHHH-------HHH
Confidence            458999999999999999999997764221   12222222222222 3444  4778999996543221       111


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                          ....+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+...  ..        .......+..
T Consensus        72 ----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~--~~--------~~~~~~~~~~  136 (189)
T 4dsu_A           72 ----YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSR--TV--------DTKQAQDLAR  136 (189)
T ss_dssp             ----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSC--SS--------CHHHHHHHHH
T ss_pred             ----HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCccc--cc--------CHHHHHHHHH
Confidence                1223599999999985433222 334444444222 223599999999998743  11        1223445566


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..+..++..++  ..+    .|+.+|+..+.+.+.+
T Consensus       137 ~~~~~~~~~Sa--~~g----~gi~~l~~~l~~~~~~  166 (189)
T 4dsu_A          137 SYGIPFIETSA--KTR----QGVDDAFYTLVREIRK  166 (189)
T ss_dssp             HHTCCEEECCT--TTC----TTHHHHHHHHHHHHHH
T ss_pred             HcCCeEEEEeC--CCC----CCHHHHHHHHHHHHHH
Confidence            66655444443  333    7899999998887754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.79  E-value=1.6e-18  Score=137.66  Aligned_cols=171  Identities=13%  Similarity=0.119  Sum_probs=99.8

Q ss_pred             CCCCCCCCC---CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCC
Q 024985            9 DSMPTSPSN---AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSS   83 (259)
Q Consensus         9 ~~~~~s~~~---~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~   83 (259)
                      .|++.....   ..++|+++|.+|||||||+|+|++.......  .+..+.+.....+. .++  ..+.+|||||..   
T Consensus        13 ~~~~~~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~---   86 (201)
T 2ew1_A           13 GLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVE-INGEKVKLQIWDTAGQE---   86 (201)
T ss_dssp             ---------CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCCSEEEEEEEEE-ETTEEEEEEEEEECCSG---
T ss_pred             cccCCCCccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEE-ECCEEEEEEEEECCCcH---
Confidence            455443332   3589999999999999999999977642211  12222222222233 344  378999999953   


Q ss_pred             CChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC
Q 024985           84 ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG  162 (259)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~  162 (259)
                              .+.......+..+|++|+|+|++++.+... ..++..+.....  ...|+++|+||+|+....  .+     
T Consensus        87 --------~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~--~v-----  149 (201)
T 2ew1_A           87 --------RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAERR--EV-----  149 (201)
T ss_dssp             --------GGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGC--SS-----
T ss_pred             --------HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccc--cc-----
Confidence                    233344556788999999999984433221 344555554322  234999999999986431  11     


Q ss_pred             CCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          163 PECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       163 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                        .......+....+..+  |..++..+    .++.+|+..+...+.+
T Consensus       150 --~~~~~~~~~~~~~~~~--~~~Sa~~g----~gv~~l~~~l~~~i~~  189 (201)
T 2ew1_A          150 --SQQRAEEFSEAQDMYY--LETSAKES----DNVEKLFLDLACRLIS  189 (201)
T ss_dssp             --CHHHHHHHHHHHTCCE--EECCTTTC----TTHHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHcCCEE--EEEeCCCC----CCHHHHHHHHHHHHHH
Confidence              0112334444555443  44444433    7899999988776654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.79  E-value=2e-18  Score=132.07  Aligned_cols=162  Identities=17%  Similarity=0.041  Sum_probs=86.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ..+|+++|.+|||||||+|++++...... ....+.+. .....+. .....+.+|||||....           .....
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~-----------~~~~~   67 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVD-GEEASLMVYDIWEQDGG-----------RWLPG   67 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEET-TEEEEEEEEECC---------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEEC-CEEEEEEEEECCCCccc-----------hhhhh
Confidence            47899999999999999999998765322 12223332 2111111 12347899999995432           12223


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      ..+..+|++++|+|++++.+... ..++..+.... .....|+++|+||+|+.+.....         ......+....+
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~  137 (166)
T 3q72_A           68 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR-QTDDVPIILVGNKSDLVRSREVS---------VDEGRACAVVFD  137 (166)
T ss_dssp             -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSC---------HHHHHHHHHHTT
T ss_pred             hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeccccccccccC---------HHHHHHHHHHhC
Confidence            34567799999999984433222 23333343321 11235999999999987542111         112334444444


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..  ++..++..+    .++.++++.+.+.+.+
T Consensus       138 ~~--~~~~Sa~~~----~gi~~l~~~l~~~~~~  164 (166)
T 3q72_A          138 CK--FIETSAALH----HNVQALFEGVVRQIRL  164 (166)
T ss_dssp             CE--EEECBGGGT----BSHHHHHHHHHHHHHH
T ss_pred             Cc--EEEeccCCC----CCHHHHHHHHHHHHHh
Confidence            43  444444433    7899999998887654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.79  E-value=1.2e-19  Score=143.62  Aligned_cols=167  Identities=14%  Similarity=0.074  Sum_probs=93.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|.+|||||||+|+|++.........+.+.+.....  +. .++  ..+.||||||....       ......
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~~-~~~~~~~l~i~Dt~G~~~~-------~~~~~~   96 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKT--LI-VDGERTVLQLWDTAGQERF-------RSIAKS   96 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEE--EE-ETTEEEEEEEEECTTCTTC-------HHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEE--EE-ECCEEEEEEEEECCCCcch-------hhhHHH
Confidence            4689999999999999999999987642221112222222222  22 233  46999999996532       111222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                          .+..+|++|+|+|++++.+... ..++..+......  ..|+++|+||+|+...  ...+. ...-.......+..
T Consensus        97 ----~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~--~~~~~-~~~v~~~~~~~~~~  167 (199)
T 2p5s_A           97 ----YFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--TVPIMLVGNKADIRDT--AATEG-QKCVPGHFGEKLAM  167 (199)
T ss_dssp             ----HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHH--HHHTT-CCCCCHHHHHHHHH
T ss_pred             ----HHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccc--ccccc-ccccCHHHHHHHHH
Confidence                2334599999999985433322 3445555543322  3499999999998632  10000 00011123344555


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ..+..  ++..++..+    .++.+++..|.+.+.
T Consensus       168 ~~~~~--~~~~SA~~g----~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          168 TYGAL--FCETSAKDG----SNIVEAVLHLAREVK  196 (199)
T ss_dssp             HHTCE--EEECCTTTC----TTHHHHHHHHHHHHT
T ss_pred             HcCCe--EEEeeCCCC----CCHHHHHHHHHHHHH
Confidence            55544  344444433    789999998877654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.79  E-value=1.2e-18  Score=138.19  Aligned_cols=166  Identities=14%  Similarity=0.116  Sum_probs=98.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|.+|||||||+|++++.......  .+..+.......+. .++  ..+.+|||||...           +..
T Consensus        28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~   93 (201)
T 2hup_A           28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQ--GSTIGVDFTMKTLE-IQGKRVKLQIWDTAGQER-----------FRT   93 (201)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEE-ETTEEEEEEEECCTTCGG-----------GHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHhhCCCCCCC--CCCcceEEEEEEEE-ECCEEEEEEEEECCCcHh-----------HHH
Confidence            3589999999999999999999877642111  11111122222222 344  4899999999542           122


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .....+..+|++|+|+|++++.+... ..++..+......  ..|+++|+||+|+.......         ...++.+..
T Consensus        94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~~~v~---------~~~~~~~~~  162 (201)
T 2hup_A           94 ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS--NIVQLLIGNKSDLSELREVS---------LAEAQSLAE  162 (201)
T ss_dssp             HHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSC---------HHHHHHHHH
T ss_pred             HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCccccccccC---------HHHHHHHHH
Confidence            22334567899999999984333221 3445555443322  34999999999986431011         123445555


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG  213 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~  213 (259)
                      ..+.. .+|..++..+    .++.+++..|.+.+.+..+
T Consensus       163 ~~~~~-~~~~~SA~~g----~gi~~l~~~l~~~i~~~~~  196 (201)
T 2hup_A          163 HYDIL-CAIETSAKDS----SNVEEAFLRVATELIMRHG  196 (201)
T ss_dssp             HTTCS-EEEECBTTTT----BSHHHHHHHHHHHHHHHTT
T ss_pred             HcCCC-EEEEEeCCCC----CCHHHHHHHHHHHHHHhcc
Confidence            55541 2344444333    7899999998887765543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.79  E-value=1e-18  Score=137.17  Aligned_cols=163  Identities=11%  Similarity=0.046  Sum_probs=97.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+|+++|.+|||||||+|+|++...+....   ..|.......+. .++..+.+|||||....           ...
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~-----------~~~   83 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI---LPTIGFSIEKFK-SSSLSFTVFDMSGQGRY-----------RNL   83 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC---CCCSSEEEEEEE-CSSCEEEEEEECCSTTT-----------GGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CCccceeEEEEE-ECCEEEEEEECCCCHHH-----------HHH
Confidence            356899999999999999999999887322221   223333333333 46789999999996532           112


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc-cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH-
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK-KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL-  173 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~-  173 (259)
                      ....+..+|++|+|+|++++.+... ..++..+...... ....|+++|+||+|+...  ...++         +...+ 
T Consensus        84 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~---------~~~~~~  152 (190)
T 2h57_A           84 WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVK---------VSQLLC  152 (190)
T ss_dssp             GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHH---------HHHHHT
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHH---------HHHHhC
Confidence            2344567899999999984422222 1233333222110 023599999999998754  22221         22222 


Q ss_pred             -HHcC-CcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          174 -QLCE-NRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       174 -~~~~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                       ..+. ..+.++..++..+    .++.+|++.|.+.+.
T Consensus       153 ~~~~~~~~~~~~~~Sa~~~----~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          153 LENIKDKPWHICASDAIKG----EGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             GGGCCSSCEEEEECBTTTT----BTHHHHHHHHHHHC-
T ss_pred             hhhccCCceEEEEccCCCC----cCHHHHHHHHHHHHH
Confidence             1111 2344555555444    789999999887654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.79  E-value=7.8e-19  Score=137.95  Aligned_cols=162  Identities=14%  Similarity=0.046  Sum_probs=96.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|.+|||||||+|+|++.........+.+.+  .....+. .++  ..+.+|||||.......          
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~----------   86 (191)
T 2a5j_A           20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE--FGARMVN-IDGKQIKLQIWDTAGQESFRSI----------   86 (191)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSS--EEEEEEE-ETTEEEEEEEECCTTGGGTSCC----------
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce--eEEEEEE-ECCEEEEEEEEECCCchhhhhh----------
Confidence            45799999999999999999999876532221112222  2222222 333  47899999996432211          


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                       ....+..+|++|+|+|+++..+... ..++..+.....  ...|+++|+||+|+....  .+       .......+..
T Consensus        87 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~--~v-------~~~~~~~~~~  154 (191)
T 2a5j_A           87 -TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLESRR--DV-------KREEGEAFAR  154 (191)
T ss_dssp             -CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGC--CS-------CHHHHHHHHH
T ss_pred             -HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCCcc--cc-------CHHHHHHHHH
Confidence             1123456799999999984433222 334444544322  234999999999986431  11       1123445555


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..+..++..++.  .+    .++.+++..|.+.+.+
T Consensus       155 ~~~~~~~~~Sa~--~~----~gi~~l~~~l~~~i~~  184 (191)
T 2a5j_A          155 EHGLIFMETSAK--TA----CNVEEAFINTAKEIYR  184 (191)
T ss_dssp             HHTCEEEEECTT--TC----TTHHHHHHHHHHHHHH
T ss_pred             HcCCEEEEEeCC--CC----CCHHHHHHHHHHHHHH
Confidence            555554444443  33    7899999988776543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.79  E-value=9.9e-19  Score=138.81  Aligned_cols=165  Identities=13%  Similarity=0.081  Sum_probs=97.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI   93 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~   93 (259)
                      .....+|+++|.+|||||||+|+|++.......  ....+.......+. .++  ..+.+|||||.....          
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~----------   71 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVM-VDDRLVTMQIWDTAGQERFQ----------   71 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEE-SSSCEEEEEEEEECSSGGGS----------
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEE-ECCEEEEEEEEeCCCcHHHH----------
Confidence            345689999999999999999999987753221  22222233333232 233  479999999954321          


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHH
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLK  170 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~  170 (259)
                       ......+..+|++|+|+|++++.+... ..++..+......  ....|+++|+||+|+...  ...        .....
T Consensus        72 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~--------~~~~~  140 (207)
T 1vg8_A           72 -SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVA--------TKRAQ  140 (207)
T ss_dssp             -CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSC--------HHHHH
T ss_pred             -HhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc--ccC--------HHHHH
Confidence             112334567899999999985433222 2344444443321  023499999999998733  111        11233


Q ss_pred             HHHH-HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          171 EILQ-LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       171 ~~~~-~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .+.. ..+..  +|..++..+    .++.+|++.|.+.+.+
T Consensus       141 ~~~~~~~~~~--~~~~Sa~~g----~gi~~l~~~l~~~~~~  175 (207)
T 1vg8_A          141 AWCYSKNNIP--YFETSAKEA----INVEQAFQTIARNALK  175 (207)
T ss_dssp             HHHHHTTSCC--EEECBTTTT----BSHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCce--EEEEeCCCC----CCHHHHHHHHHHHHHH
Confidence            3333 22223  344444333    7899999998877654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.79  E-value=2.5e-18  Score=134.51  Aligned_cols=162  Identities=10%  Similarity=0.076  Sum_probs=95.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+|+++|.+|||||||+|++++...... ..+.+    .....+. .++..+.+|||||......           .
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~----~~~~~~~-~~~~~~~i~Dt~G~~~~~~-----------~   76 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIV-INNTRFLMWDIGGQESLRS-----------S   76 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSC----SSCEEEE-ETTEEEEEEECCC----CG-----------G
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcC-cCCCc----cceEEEE-ECCEEEEEEECCCCHhHHH-----------H
Confidence            4568999999999999999999997765322 11122    1222223 4678999999999753221           1


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ....+..+|++|+|+|++++-+... ..++..+..... ....|+++|+||+|+...  ...++         +...+..
T Consensus        77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~---------i~~~~~~  144 (187)
T 1zj6_A           77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAE---------ISQFLKL  144 (187)
T ss_dssp             GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTC--CCHHH---------HHHHHTG
T ss_pred             HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCC--CCHHH---------HHHHhCh
Confidence            1223457799999999985543332 223333322110 123599999999998754  22221         1111211


Q ss_pred             --c-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          176 --C-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       176 --~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                        + ...+.++..++..+    .++.+|++.|.+.+...
T Consensus       145 ~~~~~~~~~~~~~Sa~~g----~gi~~l~~~l~~~~~~~  179 (187)
T 1zj6_A          145 TSIKDHQWHIQACCALTG----EGLCQGLEWMMSRLKIR  179 (187)
T ss_dssp             GGCCSSCEEEEECBTTTT----BTHHHHHHHHHHHHCC-
T ss_pred             hhhcCCCcEEEEccCCCC----cCHHHHHHHHHHHHHHH
Confidence              1 12334555555444    79999999998876543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.79  E-value=1.8e-18  Score=146.45  Aligned_cols=179  Identities=12%  Similarity=0.126  Sum_probs=99.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceee---EE---------------------------------
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTC---EM---------------------------------   60 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~---~~---------------------------------   60 (259)
                      ...++|+++|.+|||||||+|+|+|...++.+..  .+|..+   ..                                 
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~--~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSG--IVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIR   99 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC----------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCC--ceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHH
Confidence            3457999999999999999999999886433221  011110   00                                 


Q ss_pred             -----------------------EEEEeeCCcEEEEEeCCCCCCCCCC--hHHHHHHHHHHHhhcCCCccEEEEEEeC-C
Q 024985           61 -----------------------QRTMLKDGQVVNVIDTPGLFDSSAD--SEFVSKEIVKCIGMAKDGIHAVLLVFSV-R  114 (259)
Q Consensus        61 -----------------------~~~~~~~~~~~~liDTPG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~d~-~  114 (259)
                                             ..+....+..+.||||||+......  ...+...+......+...+|++++|+|+ +
T Consensus       100 ~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~  179 (315)
T 1jwy_B          100 EEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN  179 (315)
T ss_dssp             HHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred             HHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence                                   0011123468999999998752210  0112223444444455577999999997 4


Q ss_pred             CCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCcccccc
Q 024985          115 NRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATR  193 (259)
Q Consensus       115 ~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  193 (259)
                      ..+...+ ..+++.+..     ...|+++|+||+|+.... ....+++..        ....++..++.+..........
T Consensus       180 ~~~~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~~-~~~~~~~~~--------~~~~~~~~~~~v~~~sa~~~~~  245 (315)
T 1jwy_B          180 TDLANSDALQLAKEVDP-----EGKRTIGVITKLDLMDKG-TDAMEVLTG--------RVIPLTLGFIGVINRSQEDIIA  245 (315)
T ss_dssp             SCSTTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCSS-CCCHHHHTT--------SSSCCTTCEEECCCCCHHHHSS
T ss_pred             cchhhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCcc-hHHHHHHhC--------CCccCCCCeEEEecCChhhhcc
Confidence            4454333 345554432     234999999999998652 112222211        0011112344333332211112


Q ss_pred             hhHHHHHHHHHHHHHHHh
Q 024985          194 TEQVGKLISLVNSVILEN  211 (259)
Q Consensus       194 ~~~i~eLl~~i~~~~~~~  211 (259)
                      ..++.+|++.+.++++..
T Consensus       246 ~~gv~~l~~~~~~~~~~~  263 (315)
T 1jwy_B          246 KKSIRESLKSEILYFKNH  263 (315)
T ss_dssp             SCCHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHhCC
Confidence            478999999999998763

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.79  E-value=1.1e-18  Score=138.20  Aligned_cols=162  Identities=15%  Similarity=0.091  Sum_probs=92.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|.+|||||||+|+|++........  +..+.......+. .++  ..+.||||||..           .+..
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~-----------~~~~   89 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSN--HTIGVEFGSRVVN-VGGKTVKLQIWDTAGQE-----------RFRS   89 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEE-ETTEEEEEEEECCTTHH-----------HHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCccCC--CcccceeEEEEEE-ECCeeeEEEEEcCCCcH-----------hHHH
Confidence            45899999999999999999999876532221  2222222222222 344  589999999942           1211


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .....+..+|++|+|+|++++.+... ..++..+.....  ...|+++|+||+|+.......         ......+..
T Consensus        90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v~---------~~~~~~~~~  158 (200)
T 2o52_A           90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPEREVT---------FLEASRFAQ  158 (200)
T ss_dssp             CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGGCCSC---------HHHHHHHHH
T ss_pred             HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccccC---------HHHHHHHHH
Confidence            22234557799999999985433222 334444444322  234999999999986431111         112334445


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..+..++..  ++..+    .++.+++..|.+.+.+
T Consensus       159 ~~~~~~~~~--SA~~g----~gi~~l~~~l~~~i~~  188 (200)
T 2o52_A          159 ENELMFLET--SALTG----ENVEEAFLKCARTILN  188 (200)
T ss_dssp             HTTCEEEEE--CTTTC----TTHHHHHHHHHHHHHH
T ss_pred             HcCCEEEEE--eCCCC----CCHHHHHHHHHHHHHH
Confidence            545444433  33333    7899999988776643

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.79  E-value=2.5e-18  Score=131.32  Aligned_cols=161  Identities=14%  Similarity=0.057  Sum_probs=95.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+|+++|++|||||||+|++++.......   .+++......... .++.  .+.+|||||.....    .   .... 
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~~~~----~---~~~~-   70 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKY---DPTIEDFYRKEIE-VDSSPSVLEILDTAGTEQFA----S---MRDL-   70 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCC---CTTCCEEEEEEEE-ETTEEEEEEEEECCCTTCCH----H---HHHH-
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccC---CCCcceeEEEEEE-ECCEEEEEEEEECCCchhhH----H---HHHH-
Confidence            479999999999999999999977642211   1122122122222 3443  58999999965321    1   1111 


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                         ....+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+....  ..       .......+...
T Consensus        71 ---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~--~~-------~~~~~~~~~~~  137 (167)
T 1kao_A           71 ---YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESER--EV-------SSSEGRALAEE  137 (167)
T ss_dssp             ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGC--CS-------CHHHHHHHHHH
T ss_pred             ---HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccc--cC-------CHHHHHHHHHH
Confidence               2234599999999984433222 334444444322 1235999999999986431  11       11133445555


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .+..++..++.  .    ..++.+|++.|.+.+.+
T Consensus       138 ~~~~~~~~Sa~--~----~~gi~~l~~~l~~~~~~  166 (167)
T 1kao_A          138 WGCPFMETSAK--S----KTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             HTSCEEEECTT--C----HHHHHHHHHHHHHHHHH
T ss_pred             hCCCEEEecCC--C----CcCHHHHHHHHHHHHhh
Confidence            55555444443  3    37999999998887654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.79  E-value=2.8e-18  Score=134.49  Aligned_cols=159  Identities=14%  Similarity=0.097  Sum_probs=96.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ...+|+|+|.+|||||||+|+|++.......    ..|....+..+. ..+..+.+|||||..           .+....
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~-~~~~~~~l~Dt~G~~-----------~~~~~~   84 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDM----IPTVGFNMRKIT-KGNVTIKLWDIGGQP-----------RFRSMW   84 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CCCCSEEEEEEE-ETTEEEEEEEECCSH-----------HHHTTH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCCCCCcc----CCCCceeEEEEE-eCCEEEEEEECCCCH-----------hHHHHH
Confidence            4689999999999999999999977642211    122223333333 567799999999953           222222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH-
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ-  174 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~-  174 (259)
                      ...+..+|++|+|+|+++.-+...  ...++......  ....|+++|+||+|+...  ...+++..         ... 
T Consensus        85 ~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~---------~~~~  151 (188)
T 1zd9_A           85 ERYCRGVSAIVYMVDAADQEKIEA--SKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIE---------KMNL  151 (188)
T ss_dssp             HHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHH---------HTTG
T ss_pred             HHHHccCCEEEEEEECCCHHHHHH--HHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHH---------HhCh
Confidence            334467899999999985433222  22233332221  123599999999998754  22222111         110 


Q ss_pred             -Hc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          175 -LC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       175 -~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                       .+ ...+.+|..++..+    .++.+|++.|.+.+.
T Consensus       152 ~~~~~~~~~~~~~SA~~g----~gv~~l~~~l~~~~~  184 (188)
T 1zd9_A          152 SAIQDREICCYSISCKEK----DNIDITLQWLIQHSK  184 (188)
T ss_dssp             GGCCSSCEEEEECCTTTC----TTHHHHHHHHHHTCC
T ss_pred             hhhccCCeeEEEEECCCC----CCHHHHHHHHHHHHH
Confidence             01 12344566665544    789999999877553

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.79  E-value=1.9e-18  Score=136.86  Aligned_cols=165  Identities=16%  Similarity=0.135  Sum_probs=98.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe--eCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML--KDGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~--~~~~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ...++|+|+|.+|||||||+|+|++.......   .+ |....+.....  .....+.+|||||......          
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~---~~-t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------   87 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY---DP-TVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI----------   87 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC---CC-CSEEEEEEEEC----CEEEEEEEECCCCTTCC----------
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC---CC-ccceEEEEEEEECCEEEEEEEEECCCccchHH----------
Confidence            45789999999999999999999987753211   11 21111111111  2345789999999664322          


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                       .....+..+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+....  .+       .......+.
T Consensus        88 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~--~v-------~~~~~~~~~  156 (201)
T 3oes_A           88 -LPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPER--EV-------QAVEGKKLA  156 (201)
T ss_dssp             -CCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGC--CS-------CHHHHHHHH
T ss_pred             -HHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCcccc--cc-------CHHHHHHHH
Confidence             12345667899999999984432222 233333332211 1234999999999987431  11       112344555


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG  212 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~  212 (259)
                      ...+..  +|..++..+    .++.++++.|.+.+.+..
T Consensus       157 ~~~~~~--~~~~Sa~~~----~~v~~l~~~l~~~i~~~~  189 (201)
T 3oes_A          157 ESWGAT--FMESSAREN----QLTQGIFTKVIQEIARVE  189 (201)
T ss_dssp             HHHTCE--EEECCTTCH----HHHHHHHHHHHHHHHHC-
T ss_pred             HHhCCe--EEEEeCCCC----CCHHHHHHHHHHHHHhhh
Confidence            555554  444444433    799999999988876643

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.79  E-value=1.8e-18  Score=136.12  Aligned_cols=164  Identities=14%  Similarity=0.085  Sum_probs=101.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+++|.+|||||||+|++++.......   . .|....+......++.  .+.+|||||...           +.
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~---~-~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~   85 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAY---V-PTVFENFSHVMKYKNEEFILHLWDTAGQEE-----------YD   85 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC---C-CCSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GT
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCCCCcc---C-CeeeeeeEEEEEECCEEEEEEEEECCCcHH-----------HH
Confidence            34689999999999999999999987742211   1 1222222222223443  569999999532           22


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI  172 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (259)
                      ......+..+|++++|+|++++.+..+  ..++..+.....   ..|+++|+||+|+.......       ........+
T Consensus        86 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~-------~~~~~~~~~  155 (194)
T 3reg_A           86 RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID---TAKTVLVGLKVDLRKDGSDD-------VTKQEGDDL  155 (194)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSEEEEEEECGGGCCTTTTC-------CCHHHHHHH
T ss_pred             HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccCCCCc-------ccHHHHHHH
Confidence            333456778899999999985433333  344555554321   24999999999987531000       112244556


Q ss_pred             HHHcCCc-EEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          173 LQLCENR-RVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       173 ~~~~~~~-~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      .+..+.. ++..++  ..+    .++.++++.+.+.+.+.
T Consensus       156 ~~~~~~~~~~~~Sa--~~~----~gi~~l~~~l~~~i~~~  189 (194)
T 3reg_A          156 CQKLGCVAYIEASS--VAK----IGLNEVFEKSVDCIFSN  189 (194)
T ss_dssp             HHHHTCSCEEECBT--TTT----BSHHHHHHHHHHHHHCS
T ss_pred             HHhcCCCEEEEeec--CCC----CCHHHHHHHHHHHHHhc
Confidence            6666654 443333  333    78999999998877654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.79  E-value=2.3e-18  Score=131.60  Aligned_cols=161  Identities=16%  Similarity=0.096  Sum_probs=94.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      +..+|+++|.+|||||||+|++++...... .  .+++.......+. .++  ..+.+|||||....       ......
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~--~~t~~~~~~~~~~-~~~~~~~~~l~D~~G~~~~-------~~~~~~   71 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVED-Y--EPTKADSYRKKVV-LDGEEVQIDILDTAGQEDY-------AAIRDN   71 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSC-C--CTTCCEEEEEEEE-ETTEEEEEEEEECCC---C-------HHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCC-C--CCCcceEEEEEEE-ECCEEEEEEEEECCCcchh-------HHHHHH
Confidence            468999999999999999999998764221 1  1222222112222 333  37899999995432       111112


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                          ....+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+.......         ......+..
T Consensus        72 ----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~  137 (168)
T 1u8z_A           72 ----YFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVS---------VEEAKNRAD  137 (168)
T ss_dssp             ----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGGCCSC---------HHHHHHHHH
T ss_pred             ----HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccccCccC---------HHHHHHHHH
Confidence                2334699999999984433222 334444444332 1235999999999986431111         123444555


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ..+..  ++..++..+    .++.++++.+.+.+.
T Consensus       138 ~~~~~--~~~~Sa~~~----~gi~~l~~~l~~~i~  166 (168)
T 1u8z_A          138 QWNVN--YVETSAKTR----ANVDKVFFDLMREIR  166 (168)
T ss_dssp             HHTCE--EEECCTTTC----TTHHHHHHHHHHHHH
T ss_pred             HcCCe--EEEeCCCCC----CCHHHHHHHHHHHHH
Confidence            55544  344444433    789999999877664

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.79  E-value=2.1e-18  Score=134.07  Aligned_cols=165  Identities=15%  Similarity=0.127  Sum_probs=99.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ..++|+++|.+|||||||+|++++..... ..  .+++. ..+......++  ..+.+|||||......           
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~--~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------   69 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVD-SY--DPTIE-NTFTKLITVNGQEYHLQLVDTAGQDEYSI-----------   69 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCS-CC--CTTCC-EEEEEEEEETTEEEEEEEEECCCCCTTCC-----------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCC-CC--CCCcc-ccEEEEEEECCEEEEEEEEeCCCchhhhH-----------
Confidence            46899999999999999999999666322 11  11221 11122222444  4678999999764321           


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .....+..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+.......         ......+.+
T Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~---------~~~~~~~~~  139 (181)
T 3t5g_A           70 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMERVIS---------YEEGKALAE  139 (181)
T ss_dssp             CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSC---------HHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcceec---------HHHHHHHHH
Confidence            12234567899999999984332222 233333433222 1234999999999986441111         123445566


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG  213 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~  213 (259)
                      ..+..  ++..++..+    .++.++++.+.+.+....+
T Consensus       140 ~~~~~--~~~~Sa~~~----~~v~~l~~~l~~~~~~~~~  172 (181)
T 3t5g_A          140 SWNAA--FLESSAKEN----QTAVDVFRRIILEAEKMDG  172 (181)
T ss_dssp             HTTCE--EEECCTTSH----HHHHHHHHHHHHHHHTC--
T ss_pred             HhCCc--EEEEecCCC----CCHHHHHHHHHHHHHHhcC
Confidence            66554  444444433    7999999999888766543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.79  E-value=6.6e-18  Score=132.31  Aligned_cols=162  Identities=17%  Similarity=0.121  Sum_probs=95.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|.+|||||||+|+|++......   ..+++.......+. .++  ..+.+|||||...           +..
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~-----------~~~   84 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDE---YDPTIEDSYRKQVV-IDGETCLLDILDTAGQEE-----------YSA   84 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSC---CCTTCCEEEEEEEE-ETTEEEEEEEEECCC-----------------
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccc---cCCccceEEEEEEE-ECCEEEEEEEEECCChHH-----------HHH
Confidence            458999999999999999999997764221   12222222222222 334  3589999999542           222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ........+|++++|+|+++..+..+ ..++..+..... ....|+++|+||+|+.... ..         ...++.+.+
T Consensus        85 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~-~~---------~~~~~~~~~  153 (190)
T 3con_A           85 MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTRT-VD---------TKQAHELAK  153 (190)
T ss_dssp             -----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCC-SC---------HHHHHHHHH
T ss_pred             HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCccc-CC---------HHHHHHHHH
Confidence            23345667899999999985433222 334444444322 1235999999999987531 11         123445555


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      ..+..+  +..++..+    .++.++++.|.+.+.+.
T Consensus       154 ~~~~~~--~~~Sa~~~----~gi~~l~~~l~~~~~~~  184 (190)
T 3con_A          154 SYGIPF--IETSAKTR----QGVEDAFYTLVREIRQY  184 (190)
T ss_dssp             HHTCCE--EECCTTTC----TTHHHHHHHHHHHHHHH
T ss_pred             HcCCeE--EEEeCCCC----CCHHHHHHHHHHHHHHH
Confidence            555544  34444333    78999999988877654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.78  E-value=1.4e-18  Score=133.45  Aligned_cols=162  Identities=15%  Similarity=0.093  Sum_probs=94.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      +..+|+++|.+|||||||+|++++.........+.+.+..    ......+  ..+.+|||||.....    .   ....
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~~~~Dt~G~~~~~----~---~~~~   70 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR----QVISCDKSICTLQITDTTGSHQFP----A---MQRL   70 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE----EEEEETTEEEEEEEEECCSCSSCH----H---HHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE----EEEEECCEEEEEEEEECCCchhhH----H---HHHH
Confidence            3579999999999999999999987642222222222211    1111222  378999999975421    1   1112


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .    ...+|++++|+|++++.+.. ...++..+.+..+.....|+++|+||+|+....  .+.       ......+..
T Consensus        71 ~----~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~--~v~-------~~~~~~~~~  137 (172)
T 2erx_A           71 S----ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSR--EVQ-------SSEAEALAR  137 (172)
T ss_dssp             H----HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGC--CSC-------HHHHHHHHH
T ss_pred             h----cccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccccc--ccC-------HHHHHHHHH
Confidence            2    22459999999998443222 234555555543322235999999999986431  111       112334444


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ..+..+  |..++..+    .++.+|++.|.+.+.
T Consensus       138 ~~~~~~--~~~Sa~~~----~gi~~l~~~l~~~~~  166 (172)
T 2erx_A          138 TWKCAF--METSAKLN----HNVKELFQELLNLEK  166 (172)
T ss_dssp             HHTCEE--EECBTTTT----BSHHHHHHHHHHTCC
T ss_pred             HhCCeE--EEecCCCC----cCHHHHHHHHHHHHh
Confidence            445443  34443333    789999999877553

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.78  E-value=4e-19  Score=142.48  Aligned_cols=170  Identities=17%  Similarity=0.198  Sum_probs=100.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+++|.+|||||||+|+|++.........+.+.+.....  .....+  ..+.+|||||........        
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~~~~l~Dt~G~~~~~~~~--------   78 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVT--FLDDQGNVIKFNVWDTAGQEKKAVLK--------   78 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEE--EEBTTSCEEEEEEEEECSGGGTSCCC--------
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEE--EEeCCCcEEEEEEEecCCchhhchHH--------
Confidence            35689999999999999999999987643221222222222111  111222  479999999965432211        


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                         ......+|++|+|+|++++.+..+ ..++..+.......  .|+++|+||+|+....  .+       .......+.
T Consensus        79 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~--~~-------~~~~~~~~~  144 (218)
T 4djt_A           79 ---DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNRQ--KI-------SKKLVMEVL  144 (218)
T ss_dssp             ---HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC------C-------CHHHHHHHT
T ss_pred             ---HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcccc--cc-------CHHHHHHHH
Confidence               112446799999999985544333 34555555544332  4999999999987541  11       011222333


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCC
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPY  216 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~  216 (259)
                      ...+..++..++.  .+    .++.+++..|.+.+.+......
T Consensus       145 ~~~~~~~~~~Sa~--~g----~gv~~l~~~l~~~~~~~~~~~~  181 (218)
T 4djt_A          145 KGKNYEYFEISAK--TA----HNFGLPFLHLARIFTGRPDLIF  181 (218)
T ss_dssp             TTCCCEEEEEBTT--TT----BTTTHHHHHHHHHHHCCTTCCB
T ss_pred             HHcCCcEEEEecC--CC----CCHHHHHHHHHHHHhccccccc
Confidence            3334344444443  33    7899999999998877654443

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.78  E-value=2.6e-18  Score=134.68  Aligned_cols=165  Identities=14%  Similarity=0.080  Sum_probs=95.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH-
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV-   94 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~-   94 (259)
                      ..++|+++|.+|||||||+|+|++.........+.+.  ......+. .++  ..+.+|||||..           .+. 
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~~~~l~Dt~G~~-----------~~~~   84 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV--DFRERAVD-IDGERIKIQLWDTAGQE-----------RFRK   84 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSC--CEEEEEEE-ETTEEEEEEEEECCCSH-----------HHHT
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcce--EEEEEEEE-ECCEEEEEEEEECCCch-----------hhhh
Confidence            4589999999999999999999977653222222222  22222222 333  479999999942           122 


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      .........+|++|+|+|+++..+... ..++..+..... ....|+++|+||+|+....  .+       .....+.+.
T Consensus        85 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~--~v-------~~~~~~~~~  154 (189)
T 1z06_A           85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAI--QV-------PTDLAQKFA  154 (189)
T ss_dssp             TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGC--CS-------CHHHHHHHH
T ss_pred             hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccc--ee-------CHHHHHHHH
Confidence            222334567899999999984433222 334555544331 2235999999999986431  11       112334455


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ...+..++..++...   ....++.+++..|.+.+.
T Consensus       155 ~~~~~~~~~~Sa~~~---~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          155 DTHSMPLFETSAKNP---NDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             HHTTCCEEECCSSSG---GGGSCHHHHHHHHC----
T ss_pred             HHcCCEEEEEeCCcC---CcccCHHHHHHHHHHHHh
Confidence            555555444444322   112578999988876554

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.78  E-value=8.4e-19  Score=139.16  Aligned_cols=162  Identities=15%  Similarity=0.083  Sum_probs=74.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC--CcccccCCCCCcce--eeEEEEEEeeC----CcEEEEEeCCCCCCCCCChHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGR--RAFKSKAGSSGVTK--TCEMQRTMLKD----GQVVNVIDTPGLFDSSADSEF   88 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~--~~~~~~~~~~~~T~--~~~~~~~~~~~----~~~~~liDTPG~~~~~~~~~~   88 (259)
                      ....+|+++|.+|||||||+|+|++.  ... ..   ...|.  +.....+. .+    ...+.+|||||..        
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~---~~~t~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~~--------   84 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFL-KD---YAMTSGVEVVVAPVT-IPDTTVSVELFLLDTAGSD--------   84 (208)
T ss_dssp             EEEEEEEEC--------------------------------------CEEEE-CTTSSEEEEEEEEETTTTH--------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCccc-CC---CCCccceEEEEEEEE-ECCcccEEEEEEEECCCcH--------
Confidence            34579999999999999999999987  321 11   11222  12222223 23    3479999999953        


Q ss_pred             HHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc-cccCeEEEEEeCCCCCC-CCcccHHhhhCCCC
Q 024985           89 VSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK-KVFDYMIVVFTGGNELE-DNDETLEDYLGPEC  165 (259)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivV~nk~D~~~-~~~~~~~~~~~~~~  165 (259)
                         .+.......+..+|++|+|+|++++.+... ..++..+...... ....|+++|+||+|+.. ..  .+       .
T Consensus        85 ---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~--~v-------~  152 (208)
T 2yc2_C           85 ---LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRH--QV-------R  152 (208)
T ss_dssp             ---HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---------CC-------C
T ss_pred             ---HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhc--cC-------C
Confidence               344445566788999999999985443222 3445555443220 02349999999999875 31  11       1


Q ss_pred             CchHHHHHHHcCCcEEEEeCCCcc-cccchhHHHHHHHHHHHHHH
Q 024985          166 PKPLKEILQLCENRRVLFDNKTKD-AATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ......+....+..  ++..++.. +    .++.++++.|.+.+.
T Consensus       153 ~~~~~~~~~~~~~~--~~~~Sa~~~~----~gi~~l~~~i~~~~~  191 (208)
T 2yc2_C          153 LDMAQDWATTNTLD--FFDVSANPPG----KDADAPFLSIATTFY  191 (208)
T ss_dssp             HHHHHHHHHHTTCE--EEECCC-----------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCE--EEEeccCCCC----cCHHHHHHHHHHHHH
Confidence            12345556665543  44444433 3    789999998877664

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.78  E-value=2.3e-18  Score=133.96  Aligned_cols=160  Identities=14%  Similarity=0.135  Sum_probs=95.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+|+++|++|||||||+|++++...... ..+.+    .....+. .++..+.+|||||......           .
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~----~~~~~~~-~~~~~~~i~Dt~G~~~~~~-----------~   78 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG----FNVETLS-YKNLKLNVWDLGGQTSIRP-----------Y   78 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTT----CCEEEEE-ETTEEEEEEEEC----CCT-----------T
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCcc-CCcCc----cceEEEE-ECCEEEEEEECCCCHhHHH-----------H
Confidence            4568999999999999999999997765221 11222    1222223 4578999999999754321           2


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ....+..+|++++|+|++++.+...  ...++......  ....|+++|+||+|+...  ...++.         ...+.
T Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i---------~~~~~  145 (183)
T 1moz_A           79 WRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEV---------SKELN  145 (183)
T ss_dssp             GGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHH---------HHHTT
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHH---------HHHhC
Confidence            2345678899999999985544332  23334433321  134599999999998754  222211         11111


Q ss_pred             H--c-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 L--C-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~--~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .  . ...+.++..++..+    .++.++++.+.+.+.+
T Consensus       146 ~~~~~~~~~~~~~~Sa~~~----~gi~~l~~~l~~~~~~  180 (183)
T 1moz_A          146 LVELKDRSWSIVASSAIKG----EGITEGLDWLIDVIKE  180 (183)
T ss_dssp             TTTCCSSCEEEEEEBGGGT----BTHHHHHHHHHHHHHH
T ss_pred             cccccCCceEEEEccCCCC----cCHHHHHHHHHHHHHh
Confidence            1  1 11233444444443    7999999999887754

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.78  E-value=9.5e-20  Score=155.58  Aligned_cols=171  Identities=15%  Similarity=0.108  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      ..|+|+|.+|||||||+|+|++.....  ...+.+|..+....+...++..+.+|||||+.+.......+...+.+.+..
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i--~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~  236 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKI--ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER  236 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEE--SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCcc--ccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence            368999999999999999999876422  223345555555544433347899999999753222122233444444433


Q ss_pred             cCCCccEEEEEEeCCC---CCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985          100 AKDGIHAVLLVFSVRN---RFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~---~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                          +|++|+|+|+++   +-+..+ ..++..+......-...|+++|+||+|+...  .           ..+..+.+.
T Consensus       237 ----~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~-----------e~~~~l~~~  299 (342)
T 1lnz_A          237 ----TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--A-----------ENLEAFKEK  299 (342)
T ss_dssp             ----CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--H-----------HHHHHHHHH
T ss_pred             ----ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--H-----------HHHHHHHHH
Confidence                499999999974   222222 3344455542111134699999999998743  1           123344455


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG  213 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~  213 (259)
                      +...+.+|..++...    .++.+|+..|.+.+.+...
T Consensus       300 l~~~~~v~~iSA~tg----~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          300 LTDDYPVFPISAVTR----EGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             CCSCCCBCCCSSCCS----STTHHHHHHHHHHHTSCCC
T ss_pred             hhcCCCEEEEECCCC----cCHHHHHHHHHHHHhhCcc
Confidence            443222344444333    7899999999998876544

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.78  E-value=3.3e-18  Score=130.66  Aligned_cols=158  Identities=9%  Similarity=0.033  Sum_probs=93.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      .+|+++|++|||||||+|++++.....  .  . .|.......+. ..+..+.+|||||...           +......
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~--~--~-~t~~~~~~~~~-~~~~~~~i~Dt~G~~~-----------~~~~~~~   63 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT--T--I-PTIGFNVETVE-YKNISFTVWDVGGQDK-----------IRPLWRH   63 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC--C--C-CCSSCCEEEEE-CSSCEEEEEECCCCGG-----------GHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc--c--c-CcCceeEEEEE-ECCEEEEEEEcCCChh-----------hHHHHHH
Confidence            479999999999999999998766421  1  1 12222222333 4667999999999642           2222333


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      .+..+|++++|+|++++-+...  ...++......  ....|+++|+||+|+...  ...+++... ..      ...+.
T Consensus        64 ~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-~~------~~~~~  132 (164)
T 1r8s_A           64 YFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDK-LG------LHSLR  132 (164)
T ss_dssp             HTTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-TT------GGGCS
T ss_pred             HhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHH-hC------ccccc
Confidence            5678899999999985533222  22333332221  123599999999998754  222221110 00      01111


Q ss_pred             -CcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          178 -NRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       178 -~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                       ..+.++..++..+    .++.++++.+.+.+.
T Consensus       133 ~~~~~~~~~Sa~~~----~gi~~l~~~l~~~i~  161 (164)
T 1r8s_A          133 HRNWYIQATCATSG----DGLYEGLDWLSNQLR  161 (164)
T ss_dssp             SCCEEEEECBTTTT----BTHHHHHHHHHHHC-
T ss_pred             CccEEEEEcccCCC----cCHHHHHHHHHHHHh
Confidence             1234555555444    789999999877654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.78  E-value=6e-19  Score=136.51  Aligned_cols=161  Identities=12%  Similarity=0.045  Sum_probs=96.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|++|||||||+|++++.......  .+..+.......+. .++  ..+.+|||||.....           .
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~-----------~   78 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMY-LEDRTVRLQLWDTAGQERFR-----------S   78 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEE-ETTEEEEEEEEEECCSGGGG-----------G
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeEEEEEEEE-ECCeEEEEEEEECCCcHHHH-----------H
Confidence            3589999999999999999999976642221  22223233333333 334  379999999954321           1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ........+|++++|+|++++.+.. ...++..+....+.  ..|+++|+||+|+.......         .........
T Consensus        79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~  147 (179)
T 2y8e_A           79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS--DVIIMLVGNKTDLSDKRQVS---------TEEGERKAK  147 (179)
T ss_dssp             GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECGGGGGGCCSC---------HHHHHHHHH
T ss_pred             HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccCcCC---------HHHHHHHHH
Confidence            1112234669999999998433222 23444444443322  34999999999986431111         112334445


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ..+..++..++..  +    .++.++++.|.+.+.
T Consensus       148 ~~~~~~~~~Sa~~--~----~~i~~l~~~l~~~~~  176 (179)
T 2y8e_A          148 ELNVMFIETSAKA--G----YNVKQLFRRVAAALP  176 (179)
T ss_dssp             HHTCEEEEEBTTT--T----BSHHHHHHHHHHTCC
T ss_pred             HcCCeEEEEeCCC--C----CCHHHHHHHHHHHHh
Confidence            5555544444432  2    689999998876543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.78  E-value=9.3e-19  Score=137.51  Aligned_cols=164  Identities=14%  Similarity=0.090  Sum_probs=97.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ...+|+++|.+|||||||+|+|++.........+.+.+....  .+.. .....+.||||||.......           
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~-----------   80 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVK--TISVDGNKAKLAIWDTAGQERFRTL-----------   80 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE--EEEETTEEEEEEEEEECSSGGGCCS-----------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEE--EEEECCeEEEEEEEeCCCchhhhhh-----------
Confidence            458999999999999999999998764322222222222222  2221 12347999999996532221           


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ....+..+|++|+|+|++++.+... ..++..+..... ....|+++|+||+|+.... ..         ......+...
T Consensus        81 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~-~~---------~~~~~~~~~~  149 (195)
T 1x3s_A           81 TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENRE-VD---------RNEGLKFARK  149 (195)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSCC-SC---------HHHHHHHHHH
T ss_pred             hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcccc-cC---------HHHHHHHHHH
Confidence            1123456799999999984432222 233333333211 1235999999999985321 11         1123444555


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      .+..  ++..++..+    .++.+|++.|.+.+.+.
T Consensus       150 ~~~~--~~~~Sa~~~----~gi~~l~~~l~~~~~~~  179 (195)
T 1x3s_A          150 HSML--FIEASAKTC----DGVQCAFEELVEKIIQT  179 (195)
T ss_dssp             TTCE--EEECCTTTC----TTHHHHHHHHHHHHHTS
T ss_pred             cCCE--EEEecCCCC----CCHHHHHHHHHHHHHhh
Confidence            4543  444444443    78999999998887653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.78  E-value=7.4e-19  Score=134.60  Aligned_cols=161  Identities=17%  Similarity=0.066  Sum_probs=95.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+++|++|||||||+|+|++........  +..+.......+. .++  ..+.+|||||.......         
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~---------   70 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYK--KTIGVDFLERQIQ-VNDEDVRLMLWDTAGQEEFDAI---------   70 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSS--CCCSSSEEEEEEE-ETTEEEEEEEECCTTGGGTTCC---------
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCC--CceEEEEEEEEEE-ECCEEEEEEEEcCCCcHhHHHH---------
Confidence            346899999999999999999999876422211  1111222222222 233  47999999995432211         


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                        .......+|++++|+|++++.+... ..++..+....   ...|+++|+||+|+....  ..       .......+.
T Consensus        71 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~--~~-------~~~~~~~~~  136 (168)
T 1z2a_A           71 --TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDS--CI-------KNEEAEGLA  136 (168)
T ss_dssp             --CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGC--SS-------CHHHHHHHH
T ss_pred             --HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCccc--cc-------CHHHHHHHH
Confidence              1223456799999999984432222 23444444433   234999999999987531  11       112344555


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ...+..++..  ++..+    .++.++++.|.+.+.
T Consensus       137 ~~~~~~~~~~--Sa~~~----~~i~~l~~~l~~~~~  166 (168)
T 1z2a_A          137 KRLKLRFYRT--SVKED----LNVSEVFKYLAEKHL  166 (168)
T ss_dssp             HHHTCEEEEC--BTTTT----BSSHHHHHHHHHHHH
T ss_pred             HHcCCeEEEE--ecCCC----CCHHHHHHHHHHHHh
Confidence            5556544443  33333    689999998877653

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.78  E-value=4.8e-18  Score=136.03  Aligned_cols=170  Identities=18%  Similarity=0.107  Sum_probs=91.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|.+|||||||+|+|++...... .  .+++.......+. .++.  .+.+|||||...           +..
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~-~--~~t~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~-----------~~~   97 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPES-Y--TPTVFERYMVNLQ-VKGKPVHLHIWDTAGQDD-----------YDR   97 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEE-ETTEEEEEEEEEC-------------------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCC-C--CCccceeEEEEEE-ECCEEEEEEEEECCCchh-----------hhH
Confidence            458999999999999999999998764221 1  1112111111222 3333  789999999542           222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh-----CCCCCch
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL-----GPECPKP  168 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~-----~~~~~~~  168 (259)
                      .....+..+|++|+|+|++++.+....  .++..+....   ...|+++|+||+|+...  ....+.+     .......
T Consensus        98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~  172 (214)
T 2j1l_A           98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKD--KSLVNKLRRNGLEPVTYHR  172 (214)
T ss_dssp             -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSC--HHHHHHHHHTTCCCCCHHH
T ss_pred             HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhcc--chhhhhhcccccCcccHHH
Confidence            223346688999999999854333322  3455554432   13499999999998765  3222221     0011123


Q ss_pred             HHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985          169 LKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG  212 (259)
Q Consensus       169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~  212 (259)
                      ...+....+.. .++..++..+    .++.+|++.|.+.+.+..
T Consensus       173 ~~~~~~~~~~~-~~~~~SA~~g----~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          173 GQEMARSVGAV-AYLECSARLH----DNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             HHHHHHHTTCS-EEEECBTTTT----BSHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHhcCCC-EEEEecCCCC----CCHHHHHHHHHHHHHHhh
Confidence            45555555541 2334444333    789999999888776543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.78  E-value=2.1e-18  Score=143.00  Aligned_cols=162  Identities=15%  Similarity=0.144  Sum_probs=101.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ..+|+++|.+|||||||+|+|+|...+..  ..+++|.......+. . +..+.+|||||.+.......  .+.+.....
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~--~~pg~tv~~~~~~~~-~-~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~   76 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVG--NWPGVTVERKSGLVK-K-NKDLEIQDLPGIYSMSPYSP--EAKVARDYL   76 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCC--SSSCCCCSCEEEECT-T-CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCCcEEEEEEEEe-c-CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence            47899999999999999999999864322  234566555444333 2 67899999999876532211  112222111


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN  178 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (259)
                      . ...+|++++|+|+++ . .....+...+.+ .+    .|+++|+||+|+....          ........+.+..+.
T Consensus        77 ~-~~~~d~vi~V~D~t~-~-e~~~~~~~~l~~-~~----~p~ilv~NK~Dl~~~~----------~~~~~~~~l~~~lg~  138 (272)
T 3b1v_A           77 L-SQRADSILNVVDATN-L-ERNLYLTTQLIE-TG----IPVTIALNMIDVLDGQ----------GKKINVDKLSYHLGV  138 (272)
T ss_dssp             H-TTCCSEEEEEEEGGG-H-HHHHHHHHHHHH-TC----SCEEEEEECHHHHHHT----------TCCCCHHHHHHHHTS
T ss_pred             h-cCCCCEEEEEecCCc-h-HhHHHHHHHHHh-cC----CCEEEEEEChhhCCcC----------CcHHHHHHHHHHcCC
Confidence            1 146899999999983 2 112233333433 23    4999999999976321          111234555566565


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .++..++  ..+    .|+.+|++.|.+.+..
T Consensus       139 ~vi~~SA--~~g----~gi~el~~~i~~~~~~  164 (272)
T 3b1v_A          139 PVVATSA--LKQ----TGVDQVVKKAAHTTTS  164 (272)
T ss_dssp             CEEECBT--TTT----BSHHHHHHHHHHSCTT
T ss_pred             CEEEEEc--cCC----CCHHHHHHHHHHHHhh
Confidence            5444443  332    7899999999886644

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.78  E-value=2.9e-18  Score=152.41  Aligned_cols=164  Identities=13%  Similarity=0.168  Sum_probs=87.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ..+|+++|++|||||||+|+|++....... ..+++|.+.....+. .++..+.+|||||+.++...   +.........
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs-~~~gtT~d~~~~~i~-~~g~~l~liDT~G~~~~~~~---ve~~gi~~~~  307 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVS-HMPGTTRDYIEECFI-HDKTMFRLTDTAGLREAGEE---IEHEGIRRSR  307 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC-------------------CEEEE-ETTEEEEEEC-----------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEE-ECCeEEEEEECCCCCcchhH---HHHHHHHHHH
Confidence            468999999999999999999998642222 234556555544444 57889999999998653211   1111112234


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEGG-AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      ..+..+|++|+|+|++++.+.... ....++... .   ..|+++|+||+|+....  ...          .+.+.+...
T Consensus       308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~---~~piIvV~NK~Dl~~~~--~~~----------~~~l~~~~~  371 (476)
T 3gee_A          308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAH-P---AAKFLTVANKLDRAANA--DAL----------IRAIADGTG  371 (476)
T ss_dssp             CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T---TSEEEEEEECTTSCTTT--HHH----------HHHHHHHHT
T ss_pred             hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C---CCCEEEEEECcCCCCcc--chh----------HHHHHhcCC
Confidence            466789999999999977666321 222233332 2   24999999999987652  111          112222211


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ..  ++..++..+    .|+.+|++.|.+.+.
T Consensus       372 ~~--~i~vSAktg----~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          372 TE--VIGISALNG----DGIDTLKQHMGDLVK  397 (476)
T ss_dssp             SC--EEECBTTTT----BSHHHHHHHHTHHHH
T ss_pred             Cc--eEEEEECCC----CCHHHHHHHHHHHHh
Confidence            22  333343333    799999999999887

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.78  E-value=3.8e-18  Score=132.91  Aligned_cols=163  Identities=15%  Similarity=0.091  Sum_probs=96.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+++|.+|||||||+|+|++......   ..+++.......+. .++  ..+.+|||||.....    .   ...
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~----~---~~~   84 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYA----A---IRD   84 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCS---CCTTCCEEEEEEEE-ETTEEEEEEEEECCCTTCCH----H---HHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCc---CCCccceEEEEEEE-ECCEEEEEEEEECCCCcccH----H---HHH
Confidence            3568999999999999999999998764221   11222222222222 344  378999999965421    1   111


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      ..    +..+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+.......         ...++.+.
T Consensus        85 ~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~  150 (187)
T 2a9k_A           85 NY----FRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVS---------VEEAKNRA  150 (187)
T ss_dssp             HH----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGGCCSC---------HHHHHHHH
T ss_pred             HH----hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccC---------HHHHHHHH
Confidence            22    234599999999984432222 334444444332 1235999999999986431111         12344555


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +..+..  ++..++..+    .++.+|++.|.+.+.+
T Consensus       151 ~~~~~~--~~~~Sa~~~----~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          151 EQWNVN--YVETSAKTR----ANVDKVFFDLMREIRA  181 (187)
T ss_dssp             HHTTCE--EEECCTTTC----TTHHHHHHHHHHHHHH
T ss_pred             HHcCCe--EEEeCCCCC----CCHHHHHHHHHHHHHH
Confidence            555544  344444333    7899999988776654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.78  E-value=2e-18  Score=134.48  Aligned_cols=155  Identities=11%  Similarity=0.079  Sum_probs=93.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ...+|+++|.+|||||||+|+|++...... ..+.+.+    ...+. .++..+.+|||||....           ....
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~----~~~~~-~~~~~~~i~Dt~G~~~~-----------~~~~   82 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN----VEEIV-INNTRFLMWDIGGQESL-----------RSSW   82 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTTSCEEE-ECCSSSS----CEEEE-ETTEEEEEEEESSSGGG-----------TCGG
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCcc-CCcCcee----eEEEE-ECCEEEEEEECCCCHhH-----------HHHH
Confidence            468999999999999999999998875211 1122222    12222 46789999999997432           1222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH-
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ-  174 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~-  174 (259)
                      ...+..+|++|+|+|++++.+...  ...++......  ....|+++|+||+|+...  ...+++         ...+. 
T Consensus        83 ~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i---------~~~~~~  149 (181)
T 2h17_A           83 NTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEI---------SQFLKL  149 (181)
T ss_dssp             GGGGTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHH---------HHHTTG
T ss_pred             HHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHH---------HHHhCc
Confidence            345678899999999985544332  22223332221  123599999999998754  222211         11111 


Q ss_pred             -Hc-CCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          175 -LC-ENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       175 -~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                       .. ...+.+|..++..+    .++.+|++.|.+
T Consensus       150 ~~~~~~~~~~~~~Sa~~g----~gi~~l~~~l~~  179 (181)
T 2h17_A          150 TSIKDHQWHIQACCALTG----EGLCQGLEWMMS  179 (181)
T ss_dssp             GGCCSSCEEEEECBTTTT----BTHHHHHHHHHT
T ss_pred             ccccCCceEEEEccCCCC----cCHHHHHHHHHh
Confidence             11 12334555555444    789999988754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.78  E-value=1.6e-18  Score=136.62  Aligned_cols=165  Identities=17%  Similarity=0.117  Sum_probs=97.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+++|.+|||||||+|+|++.........+.+.+.    ......++  ..+.+|||||.....    .   ...
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~~l~Dt~G~~~~~----~---~~~   74 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY----RQVISCDKSVCTLQITDTTGSHQFP----A---MQR   74 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE----EEEEEETTEEEEEEEEECCGGGSCH----H---HHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce----eEEEEECCEEEEEEEEeCCChHHhH----H---HHH
Confidence            4568999999999999999999998664222111111111    11111233  378999999965321    1   111


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      .    .+..+|++++|+|++++.+... ..++..+....+.....|+++|+||+|+.... ..         ......+.
T Consensus        75 ~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-~~---------~~~~~~~~  140 (199)
T 2gf0_A           75 L----SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-VD---------TREAQAVA  140 (199)
T ss_dssp             H----HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-SC---------HHHHHHHH
T ss_pred             H----hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-cC---------HHHHHHHH
Confidence            1    2234599999999984333222 33555555543322235999999999987531 11         11233444


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG  212 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~  212 (259)
                      ...+..+  |..++..+    .++.+|++.|.+.+.+..
T Consensus       141 ~~~~~~~--~~~Sa~~~----~gi~~l~~~l~~~~~~~~  173 (199)
T 2gf0_A          141 QEWKCAF--METSAKMN----YNVKELFQELLTLETRRN  173 (199)
T ss_dssp             HHHTCEE--EECBTTTT----BSHHHHHHHHHHHCSSSC
T ss_pred             HHhCCeE--EEEecCCC----CCHHHHHHHHHHHHhhhh
Confidence            5555443  44443333    789999999988775543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.78  E-value=3.1e-18  Score=131.47  Aligned_cols=161  Identities=14%  Similarity=0.172  Sum_probs=94.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ..+|+++|++|||||||+|+|++......  ..++.|.......+. .++..+.+|||||.........  .+.+.....
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~--~~~~~t~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~--~~~~~~~~~   77 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIG--NWPGVTVEKKEGEFE-YNGEKFKVVDLPGVYSLTANSI--DEIIARDYI   77 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEE-ETTEEEEEEECCCCSCSSSSSH--HHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeecc--CCCCcceeeeEEEEE-ECCcEEEEEECCCcccCCCcch--hHHHHHHHH
Confidence            47899999999999999999998764222  123334333333333 4567899999999876432211  111211111


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN  178 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (259)
                      . ..++|++++|+|+++ . .....++..+.+ .    ..|+++|+||+|+...  ..        .......+.+.++.
T Consensus        78 ~-~~~~~~~i~v~D~~~-~-~~~~~~~~~~~~-~----~~p~ilv~nK~Dl~~~--~~--------~~~~~~~~~~~~~~  139 (165)
T 2wji_A           78 I-NEKPDLVVNIVDATA-L-ERNLYLTLQLME-M----GANLLLALNKMDLAKS--LG--------IEIDVDKLEKILGV  139 (165)
T ss_dssp             H-HHCCSEEEEEEETTC-H-HHHHHHHHHHHH-T----TCCEEEEEECHHHHHH--TT--------CCCCHHHHHHHHTS
T ss_pred             h-cCCCCEEEEEecCCc-h-hHhHHHHHHHHh-c----CCCEEEEEEchHhccc--cC--------hhhHHHHHHHHhCC
Confidence            0 125799999999973 2 122234444433 1    2499999999997532  11        01124455555554


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      .+  +..++..+    .++.+|++.+.+.+
T Consensus       140 ~~--~~~SA~~~----~~v~~l~~~l~~~~  163 (165)
T 2wji_A          140 KV--VPLSAAKK----MGIEELKKAISIAV  163 (165)
T ss_dssp             CE--EECBGGGT----BSHHHHHHHHHHHT
T ss_pred             CE--EEEEcCCC----CCHHHHHHHHHHHh
Confidence            44  34444333    78999999887654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.78  E-value=1.1e-17  Score=132.61  Aligned_cols=164  Identities=16%  Similarity=0.077  Sum_probs=97.6

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI   93 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~   93 (259)
                      ....++|+|+|.+|||||||+|+|++......   ..+++.......+. .++  ..+.+|||||.....    .   ..
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~----~---~~   79 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYA----A---IR   79 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTT---CCTTCCEEEEEEEE-ETTEEEEEEEEECCCTTCCH----H---HH
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCccceEEEEEEE-ECCEEEEEEEEcCCChhhhH----H---HH
Confidence            34568999999999999999999997764221   12222222222222 344  378999999965421    1   11


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI  172 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (259)
                      ..    .+..+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+.......         ...+..+
T Consensus        80 ~~----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~  145 (206)
T 2bov_A           80 DN----YFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVS---------VEEAKNR  145 (206)
T ss_dssp             HH----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSC---------HHHHHHH
T ss_pred             HH----HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCcccccccc---------HHHHHHH
Confidence            11    2234599999999984432222 334444444321 1235999999999986531111         1234445


Q ss_pred             HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ....+..++..++.  .+    .|+.+|+..|.+.+.+
T Consensus       146 ~~~~~~~~~~~Sa~--~g----~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          146 AEQWNVNYVETSAK--TR----ANVDKVFFDLMREIRA  177 (206)
T ss_dssp             HHHHTCEEEEECTT--TC----TTHHHHHHHHHHHHHH
T ss_pred             HHHhCCeEEEEeCC--CC----CCHHHHHHHHHHHHHH
Confidence            55555544444443  33    7899999998877654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.77  E-value=3.7e-18  Score=134.16  Aligned_cols=167  Identities=8%  Similarity=0.039  Sum_probs=98.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC------CCCcceeeEEEEEE--ee--CCcEEEEEeCCCCCCCCCCh
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG------SSGVTKTCEMQRTM--LK--DGQVVNVIDTPGLFDSSADS   86 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~T~~~~~~~~~--~~--~~~~~~liDTPG~~~~~~~~   86 (259)
                      ....+|+++|.+|||||||+|.+.+.........      ....|....+....  ..  ....+.+|||||.....   
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---   88 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---   88 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS---
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH---
Confidence            4568999999999999999999887653221110      01122222222111  11  22479999999965421   


Q ss_pred             HHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHH----HHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC
Q 024985           87 EFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSL----ESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG  162 (259)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l----~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~  162 (259)
                              ......+..+|++|+|+|++.+....+...+..+    ..........|+++|+||+|+...  ..      
T Consensus        89 --------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~------  152 (198)
T 3t1o_A           89 --------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LP------  152 (198)
T ss_dssp             --------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CC------
T ss_pred             --------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cC------
Confidence                    1122345678999999999854444444444433    332111134599999999998754  11      


Q ss_pred             CCCCchHHHHHHHcCC-cEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          163 PECPKPLKEILQLCEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       163 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                         ...++.+++..+. .  ++..++..+    .++.++++.+.+.+.+.
T Consensus       153 ---~~~~~~~~~~~~~~~--~~~~Sa~~~----~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          153 ---VEMVRAVVDPEGKFP--VLEAVATEG----KGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             ---HHHHHHHHCTTCCSC--EEECBGGGT----BTHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHhcCCce--EEEEecCCC----cCHHHHHHHHHHHHHHH
Confidence               1233444444444 3  344444433    78999999988776543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.77  E-value=3.5e-18  Score=135.17  Aligned_cols=173  Identities=15%  Similarity=0.062  Sum_probs=97.6

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHH
Q 024985           14 SPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSK   91 (259)
Q Consensus        14 s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~   91 (259)
                      .......+|+++|.+|||||||+|++++... ...  ..+++.......+. .++.  .+.+|||||......       
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~--~~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~-------   83 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTE--YIPTAFDNFSAVVS-VDGRPVRLQLCDTAGQDEFDK-------   83 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEE-ETTEEEEEEEEECCCSTTCSS-------
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCC-CCC--CCCcccceeEEEEE-ECCEEEEEEEEECCCCHHHHH-------
Confidence            3445678999999999999999999998773 222  12222222222222 4443  677999999764322       


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC----CCC
Q 024985           92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG----PEC  165 (259)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~----~~~  165 (259)
                          .....+..+|++|+|+|++++.+..+.  .++..+.....   ..|+++|+||+|+.... .....+..    ...
T Consensus        84 ----~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~v~  155 (201)
T 2q3h_A           84 ----LRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLREDV-KVLIELDKCKEKPVP  155 (201)
T ss_dssp             ----SGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGCH-HHHHHHHTTTCCCCC
T ss_pred             ----HhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhch-hhhhhhcccccccCC
Confidence                123356678999999999854433332  35555554322   35999999999987531 11111110    001


Q ss_pred             CchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          166 PKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ......+....+.. .+|..++..+    .++.+|++.+.+.+.+
T Consensus       156 ~~~~~~~~~~~~~~-~~~~~Sa~~g----~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          156 EEAAKLLAEEIKAA-SYIECSALTQ----KNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             HHHHHHHHHHHTCS-EEEECCTTTC----TTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCc-EEEEEecCCC----CCHHHHHHHHHHHHhc
Confidence            12344455555541 2444454443    7899999988776654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.77  E-value=2.7e-19  Score=158.21  Aligned_cols=161  Identities=17%  Similarity=0.165  Sum_probs=96.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      ++|+++|++|||||||+|+|++...... ...+++|.+....... ..+..+.+|||||+......   +...+......
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~-~~~~~~~l~DT~G~~~~~~~---~~~~~~~~~~~   78 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAE-WLNYDFNLIDTGGIDIGDEP---FLAQIRQQAEI   78 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECT-TCSSCCEEEC---------C---HHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEE-ECCceEEEEECCCCCCcchh---HHHHHHHHHHH
Confidence            6899999999999999999998765322 2346677776666555 46778999999998633211   33345444455


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN-  178 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  178 (259)
                      ++..+|++|+|+|+..+++..+..+.+.+.. .    ..|+++|+||+|+.... ....++            . ..+. 
T Consensus        79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-~----~~pvilv~NK~D~~~~~-~~~~~~------------~-~lg~~  139 (436)
T 2hjg_A           79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-T----KKPVVLAVNKLDNTEMR-ANIYDF------------Y-SLGFG  139 (436)
T ss_dssp             HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-C----CSCEEEEEECCCC------CCCSS------------G-GGSSC
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-c----CCCEEEEEECccCccch-hhHHHH------------H-HcCCC
Confidence            5667799999999998888888776666643 2    34999999999987431 111111            1 1222 


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .++..++.  .+    .|+.+|++.+.+.+++
T Consensus       140 ~~~~iSA~--~g----~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          140 EPYPISGT--HG----LGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             CCEECBTT--TT----BTHHHHHHHHHHTGGG
T ss_pred             CeEEEeCc--CC----CChHHHHHHHHHhcCc
Confidence            33333333  22    7899999998887764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.77  E-value=3.9e-18  Score=134.06  Aligned_cols=166  Identities=8%  Similarity=0.010  Sum_probs=94.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+|+++|++|||||||+|++++.....  .   ..|.......+. .++..+.+|||||.....           ..
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~--~---~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~-----------~~   83 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT--L---QPTWHPTSEELA-IGNIKFTTFDLGGHIQAR-----------RL   83 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCC--C---CCCCSCEEEEEE-ETTEEEEEEECCCSGGGT-----------TS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCc--c---ccCCCCCeEEEE-ECCEEEEEEECCCCHHHH-----------HH
Confidence            456799999999999999999999876421  1   122222233333 567899999999975321           12


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCC-cccHHhhhCCCCCchHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDN-DETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~-~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ....+..+|++++|+|++++-+... ..++..+.... .....|+++|+||+|+.... .+.+.+++.... ..-+..+ 
T Consensus        84 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~-  160 (190)
T 1m2o_B           84 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQRI-  160 (190)
T ss_dssp             GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-CCC---C-
T ss_pred             HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-ccccccc-
Confidence            2345678899999999985543332 22333332211 11235999999999987531 012222221100 0000000 


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      .-.....++..++..+    .|+.++++.+.+
T Consensus       161 ~~~~~~~~~~~Sa~~g----~gi~~l~~~l~~  188 (190)
T 1m2o_B          161 EGQRPVEVFMCSVVMR----NGYLEAFQWLSQ  188 (190)
T ss_dssp             CSSCCEEEEECBTTTT----BSHHHHHHHHHT
T ss_pred             cccceEEEEEeECCcC----CCHHHHHHHHHh
Confidence            0012344566665544    799999988754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.77  E-value=3e-18  Score=151.62  Aligned_cols=193  Identities=17%  Similarity=0.191  Sum_probs=112.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH-HH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV-KC   96 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~-~~   96 (259)
                      ..++|+++|++|||||||+|+|+|....... ..+++|.+.....+. .++..+.+|||||+........+....+. ..
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~-~~~gtT~d~~~~~i~-~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVS-PIPGTTRDPVDDEVF-IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-CCC------CCEEEE-ETTEEEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccC-CCCCCcCCceEEEEE-ECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence            4589999999999999999999998753222 234555554444444 57789999999997532111000000000 00


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      .......+|++++|+|++.+.+..+..+...+.. .+    .|+++|+||+|+........+++..     .+...+..+
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-~~----~~~ilv~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~  326 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMER-RG----RASVVVFNKWDLVVHREKRYDEFTK-----LFREKLYFI  326 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CEEEEEEECGGGSTTGGGCHHHHHH-----HHHHHCGGG
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECccCCCchhhHHHHHHH-----HHHHHhccC
Confidence            0112234599999999987788777666665554 34    3999999999988652112222211     111222222


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPYSDEIFAELKKG  227 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~~~~~~~~~~~~  227 (259)
                      ....+ +..++..+    .++.+|++.+.+.+.....+.-+..+...++++
T Consensus       327 ~~~~~-~~~SA~~g----~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~  372 (439)
T 1mky_A          327 DYSPL-IFTSADKG----WNIDRMIDAMNLAYASYTTKVPSSAINSALQKV  372 (439)
T ss_dssp             TTSCE-EECBTTTT----BSHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             CCCcE-EEEECCCC----CCHHHHHHHHHHHHHhhcccCCHHHHHHHHHHH
Confidence            33222 23333333    799999999999988877665556565555544

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.77  E-value=3.4e-17  Score=126.82  Aligned_cols=166  Identities=17%  Similarity=0.150  Sum_probs=97.1

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHH
Q 024985           15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKE   92 (259)
Q Consensus        15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~   92 (259)
                      +....++|+++|.+|||||||+|+|++......   ..+++. ..+......++  ..+.+|||||........      
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~~t~~-~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~------   74 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSD---YDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMR------   74 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS---CCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCH------
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccc---cCCCcC-ceEEEEEEECCEEEEEEEEECCCchhhHHHH------
Confidence            345678999999999999999999998754221   122222 22222222344  378899999976543211      


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985           93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE  171 (259)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (259)
                       ...    +..+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+....  .+       .......
T Consensus        75 -~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~--~v-------~~~~~~~  139 (181)
T 2fn4_A           75 -EQY----MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLESQR--QV-------PRSEASA  139 (181)
T ss_dssp             -HHH----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGGGC--CS-------CHHHHHH
T ss_pred             -HHH----HhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccc--cc-------CHHHHHH
Confidence             111    223599999999984322222 233333322221 1234999999999987531  11       0112334


Q ss_pred             HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      +....+..+  |..++..+    .++.++++.|.+.+.+.
T Consensus       140 ~~~~~~~~~--~~~Sa~~~----~gv~~l~~~l~~~~~~~  173 (181)
T 2fn4_A          140 FGASHHVAY--FEASAKLR----LNVDEAFEQLVRAVRKY  173 (181)
T ss_dssp             HHHHTTCEE--EECBTTTT----BSHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCeE--EEecCCCC----CCHHHHHHHHHHHHHHh
Confidence            444444443  34443333    78999999998877654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.77  E-value=1.1e-18  Score=147.01  Aligned_cols=168  Identities=15%  Similarity=0.197  Sum_probs=107.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCC-CCCCChHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF-DSSADSEFVSKEIVKC   96 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~-~~~~~~~~~~~~~~~~   96 (259)
                      ...+|+++|++|||||||+|+|+|....... ..+++|...... +...++..+.++||||+. ..   ...+...+...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s-~~~~tTr~~~~g-i~~~~~~~i~~iDTpG~~~~~---~~~l~~~~~~~   81 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITS-RKAQTTRHRIVG-IHTEGAYQAIYVDTPGLHMEE---KRAINRLMNKA   81 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECC-CCSSCCSSCEEE-EEEETTEEEEEESSSSCCHHH---HHHHHHHHTCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccC-CCCCcceeeEEE-EEEECCeeEEEEECcCCCccc---hhhHHHHHHHH
Confidence            3468999999999999999999998753322 223344433332 233567789999999975 21   11222233333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+...+|++++|+|++. ++..+..+++.+..     ...|+++|+||+|..... ..+.+        .+..+.+..
T Consensus        82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~~~-~~~~~--------~l~~l~~~~  146 (301)
T 1ega_A           82 ASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQEK-ADLLP--------HLQFLASQM  146 (301)
T ss_dssp             TTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCCCH-HHHHH--------HHHHHHTTS
T ss_pred             HHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCccH-HHHHH--------HHHHHHHhc
Confidence            4556788999999999986 88888766666542     124999999999987521 22211        223333333


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +.. .++..++..+    .++.+|++.|...+++
T Consensus       147 ~~~-~~i~iSA~~g----~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          147 NFL-DIVPISAETG----LNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             CCS-EEEECCTTTT----TTHHHHHHHHHTTCCB
T ss_pred             CcC-ceEEEECCCC----CCHHHHHHHHHHhCCc
Confidence            332 2344444333    7899999999887764

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.77  E-value=2.3e-18  Score=138.13  Aligned_cols=162  Identities=14%  Similarity=0.113  Sum_probs=97.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ..++|+|+|.+|||||||+++++.......-..+.+...  ...... .++  ..+.||||+|.....           .
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~--~~k~~~-~~~~~v~l~iwDtaGqe~~~-----------~   77 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDF--LSKTMY-LEDRTIRLQLWDTAGLERFR-----------S   77 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------C--EEEEEE-CSSCEEEEEEECCSCTTTCG-----------G
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEE--EEEEEE-ecceEEEEEEEECCCchhhh-----------h
Confidence            357999999999999999999987654221111111111  111112 233  378899999965321           2


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ....++.+++++++|+|++++-+... ..++..+....+.+.  |++||.||+|+....  .+       .......+.+
T Consensus        78 l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~--piilVgNK~Dl~~~r--~V-------~~~e~~~~a~  146 (216)
T 4dkx_A           78 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADKR--QV-------SIEEGERKAK  146 (216)
T ss_dssp             GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGGC--CS-------CHHHHHHHHH
T ss_pred             HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC--eEEEEeeccchHhcC--cc-------cHHHHhhHHH
Confidence            22335678899999999985544332 456666666555443  999999999976431  11       1223445666


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..+..  +|..++..+    .+|.++++.|.+.+..
T Consensus       147 ~~~~~--~~e~SAktg----~nV~e~F~~i~~~i~~  176 (216)
T 4dkx_A          147 ELNVM--FIETSAKAG----YNVKQLFRRVAAALPG  176 (216)
T ss_dssp             HHTCE--EEEEBTTTT----BSHHHHHHHHHHHC--
T ss_pred             HhCCe--eEEEeCCCC----cCHHHHHHHHHHHHHh
Confidence            66654  444444443    7899999988776643

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.77  E-value=1.4e-18  Score=134.58  Aligned_cols=165  Identities=16%  Similarity=0.092  Sum_probs=97.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC---cEEEEEeCCCCCCCCCChHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG---QVVNVIDTPGLFDSSADSEFVSKEI   93 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~---~~~~liDTPG~~~~~~~~~~~~~~~   93 (259)
                      ....+|+++|.+|||||||+|++++.........+.+  .......+. .++   ..+.+|||||.......       .
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~~~~~~~Dt~G~~~~~~~-------~   73 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG--LDFFLRRIT-LPGNLNVTLQIWDIGGQTIGGKM-------L   73 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTT--SSEEEEEEE-ETTTEEEEEEEEECTTCCTTCTT-------H
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCcee--EEEEEEEEE-eCCCCEEEEEEEECCCCccccch-------h
Confidence            4568999999999999999999998764221111111  122222223 233   58999999997643221       1


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCe-EEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDY-MIVVFTGGNELEDNDETLEDYLGPECPKPLKE  171 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~-~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (259)
                          ...+..+|++++|+|++++.+... ..++..+..........| +++|+||+|+....  .+       .......
T Consensus        74 ----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~--~~-------~~~~~~~  140 (178)
T 2hxs_A           74 ----DKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMR--TI-------KPEKHLR  140 (178)
T ss_dssp             ----HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGC--SS-------CHHHHHH
T ss_pred             ----hHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccc--cc-------CHHHHHH
Confidence                122456799999999985433222 244455544322111225 89999999986431  11       0123344


Q ss_pred             HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +....+..++..++  ..+    .++.++++.|.+.+.+
T Consensus       141 ~~~~~~~~~~~~Sa--~~~----~gi~~l~~~l~~~~~~  173 (178)
T 2hxs_A          141 FCQENGFSSHFVSA--KTG----DSVFLCFQKVAAEILG  173 (178)
T ss_dssp             HHHHHTCEEEEECT--TTC----TTHHHHHHHHHHHHTT
T ss_pred             HHHHcCCcEEEEeC--CCC----CCHHHHHHHHHHHHHh
Confidence            55555554444443  333    7899999998877654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.77  E-value=2.9e-17  Score=125.06  Aligned_cols=159  Identities=18%  Similarity=0.149  Sum_probs=95.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+|+++|.+|||||||+|++++.......   .+++.......+. .++  ..+.+|||||......    .   ....
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~D~~G~~~~~~----~---~~~~   71 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEC---DPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSA----M---RDQY   71 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCC---CTTCCEEEEEEEE-ETTEEEEEEEEECCCCSSCCH----H---HHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCcccc---CCccceEEEEEEE-ECCEEEEEEEEECCCchhhhH----H---HHHh
Confidence            468999999999999999999977642211   1122211112222 333  3688999999654321    1   1112


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      +    ..+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+...  ..        .......+.+.
T Consensus        72 ~----~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~--~~--------~~~~~~~~~~~  136 (166)
T 2ce2_X           72 M----RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAAR--TV--------ESRQAQDLARS  136 (166)
T ss_dssp             H----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCC--CS--------CHHHHHHHHHH
T ss_pred             h----ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhc--cc--------CHHHHHHHHHH
Confidence            2    24599999999984432222 344444444322 123599999999998753  11        12234455555


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .+..++..+...  +    .++.++++.|.+.+.
T Consensus       137 ~~~~~~~~Sa~~--~----~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          137 YGIPYIETSAKT--R----QGVEDAFYTLVREIR  164 (166)
T ss_dssp             HTCCEEEECTTT--C----TTHHHHHHHHHHHHH
T ss_pred             cCCeEEEecCCC--C----CCHHHHHHHHHHHHH
Confidence            565554444432  2    689999999887764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.77  E-value=6.6e-18  Score=135.25  Aligned_cols=161  Identities=12%  Similarity=0.085  Sum_probs=96.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeE--EEEEEeeC-----------CcEEEEEeCCCCCCCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCE--MQRTMLKD-----------GQVVNVIDTPGLFDSSA   84 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~--~~~~~~~~-----------~~~~~liDTPG~~~~~~   84 (259)
                      ...+|+|+|.+|||||||+|+|++......    ...|....  ...+....           ...+.||||||.     
T Consensus        24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~-----   94 (217)
T 2f7s_A           24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ-----   94 (217)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH-----
T ss_pred             eeEEEEEECcCCCCHHHHHHHHhcCCCCcC----CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc-----
Confidence            358999999999999999999998764211    11122211  11122111           357999999993     


Q ss_pred             ChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhC
Q 024985           85 DSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLG  162 (259)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~  162 (259)
                            ..+.......+..+|++|+|+|+++..+...  +..++..+....  ...|+++|+||+|+....  .+     
T Consensus        95 ------~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~--~v-----  159 (217)
T 2f7s_A           95 ------ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQR--EV-----  159 (217)
T ss_dssp             ------HHHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGGC--CS-----
T ss_pred             ------HhHHhHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECCcccccc--cc-----
Confidence                  1233334445667899999999984332222  223343322211  235999999999986431  11     


Q ss_pred             CCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          163 PECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       163 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                        .......+....+..++..++..  +    .++.+|++.|.+.+.+
T Consensus       160 --~~~~~~~~~~~~~~~~~~~Sa~~--g----~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          160 --NERQARELADKYGIPYFETSAAT--G----QNVEKAVETLLDLIMK  199 (217)
T ss_dssp             --CHHHHHHHHHHTTCCEEEEBTTT--T----BTHHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHCCCcEEEEECCC--C----CCHHHHHHHHHHHHHH
Confidence              11234455566665555555443  2    6899999988776543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.77  E-value=4.4e-17  Score=126.71  Aligned_cols=167  Identities=20%  Similarity=0.121  Sum_probs=98.9

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHH
Q 024985           14 SPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSK   91 (259)
Q Consensus        14 s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~   91 (259)
                      +......+|+++|.+|||||||+|++++.......   .+++.. ........++.  .+.+|||||........     
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~---~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-----   83 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY---DPTIED-SYLKHTEIDNQWAILDVLDTAGQEEFSAMR-----   83 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC---CTTCCE-EEEEEEEETTEEEEEEEEECCSCGGGCSSH-----
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC---CCCccc-eeEEEEEeCCcEEEEEEEECCCchhhHHHH-----
Confidence            34456789999999999999999999976542211   112221 21222224444  46679999965432211     


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHH
Q 024985           92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLK  170 (259)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~  170 (259)
                        ..    .+..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+......         ......
T Consensus        84 --~~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~v---------~~~~~~  147 (183)
T 3kkq_A           84 --EQ----YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRKV---------TRDQGK  147 (183)
T ss_dssp             --HH----HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTCCS---------CHHHHH
T ss_pred             --HH----HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchhccCc---------CHHHHH
Confidence              11    1224599999999985432221 334444443222 223599999999998753111         122345


Q ss_pred             HHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          171 EILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .+....+..++..++.. .    ..++.+++..|.+.+.+
T Consensus       148 ~~~~~~~~~~~~~Sa~~-~----~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          148 EMATKYNIPYIETSAKD-P----PLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHTCCEEEEBCSS-S----CBSHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCeEEEeccCC-C----CCCHHHHHHHHHHHHhh
Confidence            56666665555555441 2    26899999998887654

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.77  E-value=1.8e-17  Score=129.12  Aligned_cols=159  Identities=14%  Similarity=0.109  Sum_probs=95.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+|+++|++|||||||+|++++.......     .|.......+. .++..+.+|||||...           +...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~-----~t~g~~~~~~~-~~~~~l~i~Dt~G~~~-----------~~~~   76 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQ-SQGFKLNVWDIGGQRK-----------IRPY   76 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEE-ETTEEEEEEECSSCGG-----------GHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCccc-----CcCCeEEEEEE-ECCEEEEEEECCCCHH-----------HHHH
Confidence            45689999999999999999999987542111     11112222233 4578999999999642           1122


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ....+..+|++++|+|++++-+...  ...++...+..  ....|+++|+||+|+...  ...++..         ..+.
T Consensus        77 ~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~---------~~~~  143 (181)
T 1fzq_A           77 WRSYFENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIA---------EGLN  143 (181)
T ss_dssp             HHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHH---------HHTT
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcCcccC--CCHHHHH---------HHhC
Confidence            2334567899999999985433322  12233332221  123599999999998754  2222111         1111


Q ss_pred             --Hc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          175 --LC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       175 --~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                        .. ...+.++..++..+    .|+.++++.+.+.+.
T Consensus       144 ~~~~~~~~~~~~~~Sa~~g----~gi~~l~~~l~~~~~  177 (181)
T 1fzq_A          144 LHTIRDRVWQIQSCSALTG----EGVQDGMNWVCKNVN  177 (181)
T ss_dssp             GGGCCSSCEEEEECCTTTC----TTHHHHHHHHHHTC-
T ss_pred             chhccCCceEEEEccCCCC----CCHHHHHHHHHHHHH
Confidence              11 12344566666554    799999999877554

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.77  E-value=1.3e-18  Score=146.17  Aligned_cols=172  Identities=13%  Similarity=0.129  Sum_probs=94.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC---CCC-----------------------ccee-------------
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG---SSG-----------------------VTKT-------------   57 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~---~~~-----------------------~T~~-------------   57 (259)
                      ...++|+++|.+|||||||+|+|+|....+....   ..+                       +|..             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            3568999999999999999999999876422111   111                       1110             


Q ss_pred             ----------eEEEEEEeeCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHHHhhcCCCccEE-EEEEeCCCCCCHhHH-H
Q 024985           58 ----------CEMQRTMLKDGQVVNVIDTPGLFDSSA--DSEFVSKEIVKCIGMAKDGIHAV-LLVFSVRNRFSEEGG-A  123 (259)
Q Consensus        58 ----------~~~~~~~~~~~~~~~liDTPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i-l~v~d~~~~~~~~~~-~  123 (259)
                                .....+.......+.||||||+.....  ..+.....+......+...++.+ ++|+|++.+++..+. .
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                      000011111236899999999875321  01111122233333333455655 479999866666653 3


Q ss_pred             HHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc-EEEEeCCCcccccchhHHHHHHH
Q 024985          124 AIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR-RVLFDNKTKDAATRTEQVGKLIS  202 (259)
Q Consensus       124 ~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~eLl~  202 (259)
                      +++.+..     ...|+++|+||+|+.... ....+.+...        ...+... ..++..++..+    .++.+|++
T Consensus       184 ~~~~~~~-----~~~~~i~V~NK~Dl~~~~-~~~~~~~~~~--------~~~~~~~~~~v~~~SA~~~----~gi~~l~~  245 (299)
T 2aka_B          184 IAKEVDP-----QGQRTIGVITKLDLMDEG-TDARDVLENK--------LLPLRRGYIGVVNRSQKDI----DGKKDITA  245 (299)
T ss_dssp             HHHHHCT-----TCSSEEEEEECGGGSCTT-CCCHHHHTTC--------SSCCTTCEEECCCCCCBCT----TSCBCHHH
T ss_pred             HHHHhCC-----CCCeEEEEEEccccCCCC-chHHHHHhCC--------cCcCCCCcEEEECCChhhc----cccccHHH
Confidence            4444422     234999999999998652 1122222210        0011112 23455555444    67888888


Q ss_pred             HHHH
Q 024985          203 LVNS  206 (259)
Q Consensus       203 ~i~~  206 (259)
                      .+.+
T Consensus       246 ~l~~  249 (299)
T 2aka_B          246 ALAA  249 (299)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7766

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.77  E-value=2.4e-19  Score=159.35  Aligned_cols=163  Identities=17%  Similarity=0.152  Sum_probs=98.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ..++|+|+|++|||||||+|+|++...... ...+++|.+....... ..+..+.+|||||+.....   .+...+....
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~-~~~~~~~liDT~G~~~~~~---~~~~~~~~~~   96 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAE-WLNYDFNLIDTGGIDIGDE---PFLAQIRQQA   96 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECT-TCSSCCEEECCCC---------CCHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEE-ECCceEEEEECCCCCCcch---HHHHHHHHHH
Confidence            357999999999999999999999775322 2346777777666555 4567999999999874221   1233444445


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      ..++..+|++|||+|+..+++..+..+++.+.+ .    ..|+++|+||+|+.... ....++.             ..+
T Consensus        97 ~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-~----~~pvilV~NK~D~~~~~-~~~~e~~-------------~lg  157 (456)
T 4dcu_A           97 EIAMDEADVIIFMVNGREGVTAADEEVAKILYR-T----KKPVVLAVNKLDNTEMR-ANIYDFY-------------SLG  157 (456)
T ss_dssp             HHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-C----CSCEEEEEECC----------CCSG-------------GGS
T ss_pred             HhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-c----CCCEEEEEECccchhhh-hhHHHHH-------------HcC
Confidence            555567799999999988899998888887765 2    34999999999987431 1111111             112


Q ss_pred             C-cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          178 N-RRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       178 ~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      . .++  ..++..+    .++.+|++.+.+.+..
T Consensus       158 ~~~~~--~iSA~~g----~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          158 FGEPY--PISGTHG----LGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             SSSEE--ECCTTTC----TTHHHHHHHHHTTGGG
T ss_pred             CCceE--Eeecccc----cchHHHHHHHHhhccc
Confidence            1 223  3333332    7899999988776653

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.77  E-value=4.8e-18  Score=134.45  Aligned_cols=168  Identities=13%  Similarity=0.078  Sum_probs=90.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+|+++|++|||||||+|++++...... ..+.+.+    ...+. .++..+.+|||||.....           ..
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~-~~t~~~~----~~~~~-~~~~~l~i~Dt~G~~~~~-----------~~   85 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPT----SEELT-IAGMTFTTFDLGGHIQAR-----------RV   85 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS----CEEEE-ETTEEEEEEEECC----C-----------CG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCcc-CCCCCce----eEEEE-ECCEEEEEEECCCcHhhH-----------HH
Confidence            4568999999999999999999998764211 1112222    22233 466899999999965322           12


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCC-cccHHhhhCCCC---CchHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDN-DETLEDYLGPEC---PKPLKE  171 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~-~~~~~~~~~~~~---~~~l~~  171 (259)
                      ....+..+|++++|+|++++-+... ..++..+.+.. .....|+++|+||+|+.... .+.+.+++....   ......
T Consensus        86 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (198)
T 1f6b_A           86 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVS  164 (198)
T ss_dssp             GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCC
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccc
Confidence            2334567899999999985433322 22333232211 11235999999999987531 012222221100   000000


Q ss_pred             HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      +.........++..++..+    .|+.++++.+.+
T Consensus       165 ~~~~~~~~~~~~~~SA~~g----~gv~~l~~~l~~  195 (198)
T 1f6b_A          165 LKELNARPLEVFMCSVLKR----QGYGEGFRWMAQ  195 (198)
T ss_dssp             TTTCCSCCEEEEECBTTTT----BSHHHHHHHHHT
T ss_pred             cccccCceEEEEEEECCCC----CCHHHHHHHHHH
Confidence            0000012344566665544    799999998764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.77  E-value=9.2e-18  Score=132.51  Aligned_cols=170  Identities=16%  Similarity=0.096  Sum_probs=95.4

Q ss_pred             CCCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHH
Q 024985           13 TSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVS   90 (259)
Q Consensus        13 ~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~   90 (259)
                      +.......+|+++|.+|||||||+|++++.........+  .+.......+. .++.  .+.+|||||....   ...  
T Consensus        17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~l~i~Dt~g~~~~---~~~--   88 (195)
T 3cbq_A           17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPE--NPEDTYERRIM-VDKEEVTLVVYDIWEQGDA---GGW--   88 (195)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTT--SCTTEEEEEEE-ETTEEEEEEEECCCCCSGG---GHH--
T ss_pred             CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCC--cccceEEEEEE-ECCEEEEEEEEecCCCccc---hhh--
Confidence            344456789999999999999999999865432121111  12122222222 3443  6788999996531   111  


Q ss_pred             HHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchH
Q 024985           91 KEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPL  169 (259)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l  169 (259)
                        +..   ..+..+|++|+|+|++++.+... ..++..+..... ....|+++|+||+|+.....-..         ...
T Consensus        89 --~~~---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~---------~~~  153 (195)
T 3cbq_A           89 --LRD---HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSL---------EEG  153 (195)
T ss_dssp             --HHH---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCSCH---------HHH
T ss_pred             --hHH---HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCcCH---------HHH
Confidence              111   12235699999999985433221 234444443221 12359999999999875411111         123


Q ss_pred             HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      ..+....+..++..++  ..+    .++.++++.+...+.+.
T Consensus       154 ~~~a~~~~~~~~e~Sa--~~~----~~v~~lf~~l~~~i~~~  189 (195)
T 3cbq_A          154 RHLAGTLSCKHIETSA--ALH----HNTRELFEGAVRQIRLR  189 (195)
T ss_dssp             HHHHHHTTCEEEEEBT--TTT----BSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCEEEEEcC--CCC----CCHHHHHHHHHHHHHHh
Confidence            3445555544443433  333    68999999988877653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.77  E-value=6.3e-18  Score=133.94  Aligned_cols=171  Identities=15%  Similarity=0.093  Sum_probs=100.3

Q ss_pred             CCCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHH
Q 024985           13 TSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVS   90 (259)
Q Consensus        13 ~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~   90 (259)
                      .+......+|+++|.+|||||||+|++++.......  .+..+.... ..+. .++  ..+.+|||||....        
T Consensus        19 ~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~-~~~~-~~~~~~~l~i~Dt~G~~~~--------   86 (201)
T 2gco_A           19 SHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYI-ADIE-VDGKQVELALWDTAGQEDY--------   86 (201)
T ss_dssp             ---CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSC--CCSSCCCCE-EEEE-ETTEEEEEEEECCCCSGGG--------
T ss_pred             CCCcccceEEEEECCCCCCHHHHHHHHHhCcCCccc--CCcccceEE-EEEE-ECCEEEEEEEEECCCchhH--------
Confidence            344455789999999999999999999987652221  111111111 1122 334  37899999995421        


Q ss_pred             HHHHHHHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC----C-
Q 024985           91 KEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG----P-  163 (259)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~----~-  163 (259)
                         .......+..+|++|+|+|+++..+...  ..++..+.....   ..|+++|+||+|+...  ....+.+.    . 
T Consensus        87 ---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~  158 (201)
T 2gco_A           87 ---DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRQD--EHTRRELAKMKQEP  158 (201)
T ss_dssp             ---TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGTTC--HHHHHHHHTTTCCC
T ss_pred             ---HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhhcC--ccchhhhcccccCc
Confidence               1222345678899999999984433222  345555554321   3499999999998865  22222111    0 


Q ss_pred             CCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          164 ECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      -.......+....+.. .+|..++..+    .++.+|++.|.+.+
T Consensus       159 v~~~~~~~~~~~~~~~-~~~~~SA~~g----~gi~~l~~~i~~~~  198 (201)
T 2gco_A          159 VRSEEGRDMANRISAF-GYLECSAKTK----EGVREVFEMATRAG  198 (201)
T ss_dssp             CCHHHHHHHHHHTTCS-EEEECCTTTC----TTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCCc-EEEEeeCCCC----CCHHHHHHHHHHHH
Confidence            0112334455555541 2444454443    78999999887754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.76  E-value=1.2e-17  Score=133.46  Aligned_cols=119  Identities=17%  Similarity=0.189  Sum_probs=73.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ...++|+++|.+|||||||+|++++..... ..  .+++  .....+....  +..+.+|||||..           .+.
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~   68 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRD-TQ--TSIT--DSSAIYKVNNNRGNSLTLIDLPGHE-----------SLR   68 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCC-BC--CCCS--CEEEEEECSSTTCCEEEEEECCCCH-----------HHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccc-cc--CCcc--eeeEEEEecCCCccEEEEEECCCCh-----------hHH
Confidence            456899999999999999999999776422 11  1222  2222233221  5689999999953           122


Q ss_pred             H-HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc----cccCeEEEEEeCCCCCCC
Q 024985           95 K-CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK----KVFDYMIVVFTGGNELED  152 (259)
Q Consensus        95 ~-~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~----~~~~~~ivV~nk~D~~~~  152 (259)
                      . .....+..+|++|+|+|+++ +........+++...+..    ....|+++|+||+|+...
T Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  130 (214)
T 2fh5_B           69 FQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  130 (214)
T ss_dssp             HHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             HHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence            2 22334667899999999983 322233344444433211    223599999999998865

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.76  E-value=9.8e-18  Score=131.02  Aligned_cols=164  Identities=15%  Similarity=0.208  Sum_probs=102.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh--HHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS--EFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~--~~~~~~~~~   95 (259)
                      ..++|+++|++|||||||+|+|++...+...  .++.|.......+. .++..+.+|||||........  +.+...+  
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~--   80 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFE-YNGEKFKVVDLPGVYSLTANSIDEIIARDY--   80 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEE-ETTEEEEEEECCCCSCCSSSSHHHHHHHHH--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccC--CCCeeccceEEEEE-eCCcEEEEEECCCcCccccccHHHHHHHHH--
Confidence            5689999999999999999999987643332  23445444444444 567899999999987653221  1111111  


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                       +..  ..+|++++|+|.+ .+ .....++..+..     ...|+++|+||+|+...  ..        .......+.+.
T Consensus        81 -~~~--~~~~~~i~v~d~~-~~-~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~--~~--------~~~~~~~~~~~  140 (188)
T 2wjg_A           81 -IIN--EKPDLVVNIVDAT-AL-ERNLYLTLQLME-----MGANLLLALNKMDLAKS--LG--------IEIDVDKLEKI  140 (188)
T ss_dssp             -HHH--HCCSEEEEEEEGG-GH-HHHHHHHHHHHT-----TTCCEEEEEECHHHHHH--TT--------CCCCHHHHHHH
T ss_pred             -Hhc--cCCCEEEEEecch-hH-HHHHHHHHHHHh-----cCCCEEEEEEhhhcccc--cc--------chHHHHHHHHH
Confidence             111  2469999999987 32 122233333332     12499999999997532  11        11245566666


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG  212 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~  212 (259)
                      ++..++..++  ..    ..++.+|++.+...+.+..
T Consensus       141 ~~~~~~~~Sa--~~----~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          141 LGVKVVPLSA--AK----KMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             HTSCEEECBG--GG----TBSHHHHHHHHHHHHTTC-
T ss_pred             hCCCeEEEEe--cC----CCCHHHHHHHHHHHHHhcc
Confidence            6655444443  32    2689999999988887654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.76  E-value=1.9e-18  Score=136.41  Aligned_cols=178  Identities=11%  Similarity=0.047  Sum_probs=95.6

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 024985           14 SPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI   93 (259)
Q Consensus        14 s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~   93 (259)
                      .......+|+++|.+|||||||+|.+++......... ...+.......+.......+.+|||||........   + ..
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~---~-~~   89 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLF-LESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT---F-DY   89 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGG-CCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTT---C-CH
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceee-eccccceeeeeccCCCeeEEEEEECCCCHHHHhhh---h-hc
Confidence            3445678999999999999999999998643221111 11122222111111234589999999976432211   0 00


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      .    ..+.++|++|+|+|+++++......+..++..........|+++|+||+|+..+  ....+....-.......+.
T Consensus        90 ~----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~v~~~~~~~~~  163 (196)
T 3llu_A           90 E----MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD--DHKIETQRDIHQRANDDLA  163 (196)
T ss_dssp             H----HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHHHHHHHHHHHHH
T ss_pred             c----cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch--hhhhHHHhHHHHHHHHHHH
Confidence            1    123356999999999866434445555666654322234599999999998754  1111000000011122333


Q ss_pred             HHc--CCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          174 QLC--ENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       174 ~~~--~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      ...  .....++..++.    . .++.+++..+.+.
T Consensus       164 ~~~~~~~~~~~~e~Sa~----~-~~v~~~f~~l~~~  194 (196)
T 3llu_A          164 DAGLEKLHLSFYLTSIY----D-HSIFEAFSKVVQK  194 (196)
T ss_dssp             HTTCTTSCEEEEEECTT----S-THHHHHHHHHHHH
T ss_pred             HhhhhcCCcceEEEEec----h-hhHHHHHHHHHHH
Confidence            311  223344444432    3 6899999887654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.76  E-value=1.4e-18  Score=153.91  Aligned_cols=162  Identities=18%  Similarity=0.176  Sum_probs=97.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ..+|+++|++|||||||+|+|++....... ..+++|.+.....+. .++.++.+|||||+.++...   +...-.....
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~-~~g~~v~liDT~G~~~~~~~---ve~~gi~~~~  298 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVT-DLPGTTRDVVESQLV-VGGIPVQVLDTAGIRETSDQ---VEKIGVERSR  298 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCS-CCTTCCHHHHHHEEE-ETTEEEEECC-----------------------
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCeeEEEEEEEEE-ECCEEEEEEECCccccchhH---HHHHHHHHHh
Confidence            468999999999999999999987642222 234555554433333 57889999999998653211   1111112233


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN  178 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (259)
                      .....+|++|+|+|++++.+..+..+++.+..       .|+++|+||+|+...  .... .+..     +   .  ...
T Consensus       299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~--~~~~-~~~~-----~---~--~~~  358 (462)
T 3geh_A          299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK--QLIT-SLEY-----P---E--NIT  358 (462)
T ss_dssp             CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG--GGST-TCCC-----C---T--TCC
T ss_pred             hhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc--hhhH-HHHH-----h---c--cCC
Confidence            45678999999999998888877666665532       399999999998754  2211 1110     0   0  122


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      .++..+..  .+    .|+.+|++.|.+.+...
T Consensus       359 ~~i~iSAk--tg----~Gi~eL~~~i~~~~~~~  385 (462)
T 3geh_A          359 QIVHTAAA--QK----QGIDSLETAILEIVQTG  385 (462)
T ss_dssp             CEEEEBTT--TT----BSHHHHHHHHHHHHTTS
T ss_pred             cEEEEECC--CC----CCHHHHHHHHHHHHhcc
Confidence            33334433  22    78999999999988654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.76  E-value=8.6e-18  Score=128.94  Aligned_cols=163  Identities=17%  Similarity=0.074  Sum_probs=89.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+|+++|++|||||||+|++++........  .+.+.......+. .++  ..+.+|||||......       .+.. 
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~~-------~~~~-   70 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE--MENSEDTYERRIM-VDKEEVTLIVYDIWEQGDAGG-------WLQD-   70 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEE-ETTEEEEEEEECCCCC---------------C-
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCccccc--CCCcCCeeeEEEE-ECCeEEEEEEEECCCccccch-------hhhh-
Confidence            4689999999999999999998766422221  2222222222222 333  4788999999754211       0111 


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                        ..+..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+.+....         .......+...
T Consensus        71 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~---------~~~~~~~~~~~  138 (169)
T 3q85_A           71 --HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREV---------SLEEGRHLAGT  138 (169)
T ss_dssp             --HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGGGCCS---------CHHHHHHHHHH
T ss_pred             --hhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhhcccC---------CHHHHHHHHHH
Confidence              11224699999999985322221 233443433221 113599999999998643111         11234455556


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .+..+  +..++..+    .++.++++.+.+.+..
T Consensus       139 ~~~~~--~~~Sa~~~----~~v~~l~~~l~~~i~~  167 (169)
T 3q85_A          139 LSCKH--IETSAALH----HNTRELFEGAVRQIRL  167 (169)
T ss_dssp             TTCEE--EECBTTTT----BSHHHHHHHHHHHHHH
T ss_pred             cCCcE--EEecCccC----CCHHHHHHHHHHHHHh
Confidence            55544  44443333    7899999998877654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.76  E-value=3.8e-17  Score=124.89  Aligned_cols=160  Identities=15%  Similarity=0.112  Sum_probs=93.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+|+++|.+|||||||+|++++.......   .+++.......+. .+  ...+.+|||||......    ..   ...
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~~~~l~D~~G~~~~~~----~~---~~~   71 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY---DPTIEDSYRKQVE-VDCQQCMLEILDTAGTEQFTA----MR---DLY   71 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSC---CCCSEEEEEEEEE-SSSCEEEEEEEEECSSCSSTT----HH---HHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCC---CCCccceEEEEEE-ECCEEEEEEEEECCChHHHHH----HH---HHH
Confidence            479999999999999999999986542211   1112111111122 22  34789999999764322    11   111


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                          +..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+....  ..       .......+.+.
T Consensus        72 ----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~--~~-------~~~~~~~~~~~  137 (167)
T 1c1y_A           72 ----MKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDER--VV-------GKEQGQNLARQ  137 (167)
T ss_dssp             ----HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGC--CS-------CHHHHHHHHHH
T ss_pred             ----hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccccc--cC-------CHHHHHHHHHH
Confidence                223599999999984432222 334444544322 1235999999999986431  11       01233444555


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      .+. ..++..++..+    .++.+|++.|.+.+
T Consensus       138 ~~~-~~~~~~Sa~~~----~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          138 WCN-CAFLESSAKSK----INVNEIFYDLVRQI  165 (167)
T ss_dssp             TTS-CEEEECBTTTT----BSHHHHHHHHHHHH
T ss_pred             ccC-CcEEEecCCCC----CCHHHHHHHHHHHH
Confidence            422 22444444333    78999999887655

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.76  E-value=1.3e-17  Score=131.14  Aligned_cols=168  Identities=14%  Similarity=0.049  Sum_probs=100.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+++|.+|||||||+|++++..... .  ..+++.......+. .++  ..+.+|||||.....           
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~-~--~~~t~~~~~~~~~~-~~~~~~~~~i~D~~G~~~~~-----------   80 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPE-E--YVPTVFDHYAVSVT-VGGKQYLLGLYDTAGQEDYD-----------   80 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCC-S--CCCSSCCCEEEEEE-SSSCEEEEEEECCCCSSSST-----------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCC-C--CCCcccceeEEEEE-ECCEEEEEEEEECCCCcchh-----------
Confidence            345899999999999999999999775421 1  11222111111222 333  478999999976432           


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC-----CCCc
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP-----ECPK  167 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~-----~~~~  167 (259)
                      ......+..+|++|+|+|++++.+...  ..++..+.....   ..|+++|+||+|+...  ....+.+..     ....
T Consensus        81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~  155 (194)
T 2atx_A           81 RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRDD--PKTLARLNDMKEKPICVE  155 (194)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTTC--HHHHHHHTTTTCCCCCHH
T ss_pred             HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccc--ccchhhcccccCcccCHH
Confidence            122345678899999999985433322  245555555322   3499999999998764  222111110     0112


Q ss_pred             hHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          168 PLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ....+....+.. .+|..++..+    .++.++++.|.+.+.
T Consensus       156 ~~~~~~~~~~~~-~~~~~Sa~~g----~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          156 QGQKLAKEIGAC-CYVECSALTQ----KGLKTVFDEAIIAIL  192 (194)
T ss_dssp             HHHHHHHHHTCS-CEEECCTTTC----TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCc-EEEEeeCCCC----CCHHHHHHHHHHHHh
Confidence            334445555441 2344444443    789999998876553

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.76  E-value=4.4e-18  Score=133.28  Aligned_cols=161  Identities=11%  Similarity=0.085  Sum_probs=99.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+|+++|.+|||||||+|++++...... ..    |.......+. .++..+.+|||||......           .
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~----t~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~-----------~   82 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTT-VP----TVGVNLETLQ-YKNISFEVWDLGGQTGVRP-----------Y   82 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEE-CS----STTCCEEEEE-ETTEEEEEEEECCSSSSCC-----------C
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCc-CC----CCceEEEEEE-ECCEEEEEEECCCCHhHHH-----------H
Confidence            3568999999999999999999987765321 11    2112222233 4578999999999764322           1


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH-
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL-  173 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~-  173 (259)
                      ....+..+|++|+|+|++++-+...  ...++......  ....|+++|+||+|+...  ...+++..         .. 
T Consensus        83 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~---------~~~  149 (189)
T 2x77_A           83 WRCYFSDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDELRKSLLLIFANKQDLPDA--ASEAEIAE---------QLG  149 (189)
T ss_dssp             CSSSSTTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCSTTTTCEEEEEEECTTSTTC--CCHHHHHH---------HTT
T ss_pred             HHHHhhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhhcCCCeEEEEEECCCCcCC--CCHHHHHH---------HhC
Confidence            2335668899999999985543332  22333332221  123599999999998754  22222111         11 


Q ss_pred             -HHc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          174 -QLC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       174 -~~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                       ..+ ...+.++..++..+    .++.++++.+.+.+.+.
T Consensus       150 ~~~~~~~~~~~~~~Sa~~~----~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          150 VSSIMNRTWTIVKSSSKTG----DGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             GGGCCSSCEEEEECCTTTC----TTHHHHHHHHHHHHHHT
T ss_pred             hhhccCCceEEEEccCCCc----cCHHHHHHHHHHHHHhc
Confidence             111 12234555665544    79999999998887654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.76  E-value=6.9e-18  Score=131.39  Aligned_cols=168  Identities=15%  Similarity=0.017  Sum_probs=100.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|.+|||||||+|++++.......   .+++......... .++.  .+.+|||||....           ..
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~-----------~~   68 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY-----------DR   68 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSC---CCCSCCEEEEEEE-ETTEEEEEEEECCCCSGGG-----------TT
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCc---CCcccceeEEEEE-ECCEEEEEEEEECCCCHhH-----------HH
Confidence            4589999999999999999999976542211   1112111111122 3343  6779999997432           12


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh-----CCCCCch
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL-----GPECPKP  168 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~-----~~~~~~~  168 (259)
                      ........+|++++|+|++++.+..+.  .++..+....+   ..|+++|+||+|+...  ....+.+     ..-....
T Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~  143 (186)
T 1mh1_A           69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ  143 (186)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHH
T ss_pred             HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc--chhhhhhcccccccCCHHH
Confidence            223456788999999999854333332  35555555322   3599999999998754  2221111     0011123


Q ss_pred             HHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          169 LKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ...+....+. ..++..++..+    .|+.+|++.+.+.+.+
T Consensus       144 ~~~~~~~~~~-~~~~~~Sa~~g----~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          144 GLAMAKEIGA-VKYLECSALTQ----RGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             HHHHHHHTTC-SEEEECCTTTC----TTHHHHHHHHHHHHSC
T ss_pred             HHHHHHhcCC-cEEEEecCCCc----cCHHHHHHHHHHHHhc
Confidence            3445555543 13444444443    7899999998887753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.75  E-value=3.5e-17  Score=128.97  Aligned_cols=162  Identities=17%  Similarity=0.147  Sum_probs=95.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+++|.+|||||||+|++++....... . +...... ...+. .++  ..+.+|||||...     ..   ...
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~-~t~~~~~-~~~~~-~~~~~~~~~l~Dt~G~~~-----~~---~~~   93 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY-D-PTLESTY-RHQAT-IDDEVVSMEILDTAGQED-----TI---QRE   93 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC-C-TTCCEEE-EEEEE-ETTEEEEEEEEECCCCCC-----CH---HHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCccc-C-CCCCceE-EEEEE-ECCEEEEEEEEECCCCCc-----cc---chh
Confidence            45689999999999999999999987642211 1 1111111 11122 233  4799999999765     11   111


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      ..    +..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+.......         ......+.
T Consensus        94 ~~----~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~---------~~~~~~~~  159 (196)
T 2atv_A           94 GH----MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVS---------TEEGEKLA  159 (196)
T ss_dssp             HH----HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSC---------HHHHHHHH
T ss_pred             hh----hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccccccC---------HHHHHHHH
Confidence            22    224599999999984333222 334555544322 2235999999999986431111         12333444


Q ss_pred             HHcCCcEEEEeCCCcccccchh-HHHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTE-QVGKLISLVNSVILE  210 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~-~i~eLl~~i~~~~~~  210 (259)
                      ...+..  +|..++..+    . ++.++++.|.+.+.+
T Consensus       160 ~~~~~~--~~~~Sa~~g----~~gi~~l~~~l~~~i~~  191 (196)
T 2atv_A          160 TELACA--FYECSACTG----EGNITEIFYELCREVRR  191 (196)
T ss_dssp             HHHTSE--EEECCTTTC----TTCHHHHHHHHHHHHHH
T ss_pred             HHhCCe--EEEECCCcC----CcCHHHHHHHHHHHHHh
Confidence            454443  444444433    6 899999988776654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.75  E-value=3.8e-18  Score=137.42  Aligned_cols=164  Identities=15%  Similarity=0.092  Sum_probs=97.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ...++|+|+|.+|||||||+|+|++........  +..+.......+. .++  ..+.||||||.....           
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~-----------   76 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK--STIGVEFATRTLE-IEGKRIKAQIWDTAGQERYR-----------   76 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEE-ETTEEEEEEEECCTTTTTTT-----------
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEE-ECCEEEEEEEEECCCccchh-----------
Confidence            345899999999999999999999876532221  1122222222222 344  478999999965322           


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      ......+..+|++|+|+|++++.+... ..++..+......  ..|++||+||+|+....  .+       .......+.
T Consensus        77 ~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~~--~v-------~~~~~~~~~  145 (223)
T 3cpj_B           77 AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD--NVAVGLIGNKSDLAHLR--AV-------PTEESKTFA  145 (223)
T ss_dssp             CCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGC--CS-------CHHHHHHHH
T ss_pred             hhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccccc--cc-------CHHHHHHHH
Confidence            122345678899999999985443332 3344445443222  34999999999986431  11       011334445


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      ...+..  ++..++..+    .++.+|++.|...+.+.
T Consensus       146 ~~~~~~--~~~~Sa~~~----~gi~~l~~~l~~~i~~~  177 (223)
T 3cpj_B          146 QENQLL--FTETSALNS----ENVDKAFEELINTIYQK  177 (223)
T ss_dssp             HHTTCE--EEECCCC-C----CCHHHHHHHHHHHHTTC
T ss_pred             HHcCCE--EEEEeCCCC----CCHHHHHHHHHHHHHHH
Confidence            554443  444444443    78999999988877543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.75  E-value=1.5e-17  Score=129.93  Aligned_cols=164  Identities=20%  Similarity=0.188  Sum_probs=95.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh----HHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS----EFVSKEIVK   95 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~----~~~~~~~~~   95 (259)
                      ++|+++|.+|||||||+|++++.... .. ..++.|.......   ..  .+.+|||||+.....-.    +.+......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~-~~~~~t~~~~~~~---~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   74 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RG-KRPGVTRKIIEIE---WK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   74 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCS-SS-SSTTCTTSCEEEE---ET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCc-cC-CCCCccceeEEEe---cC--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence            58999999999999999999988742 22 2234444443322   12  68899999976543222    122222222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHh------------HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEE------------GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP  163 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~------------~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~  163 (259)
                      ++......++++++|+|.. .+...            +..++..+..     ...|+++|+||+|+...  .  .     
T Consensus        75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~--~--~-----  139 (190)
T 2cxx_A           75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIKN--V--Q-----  139 (190)
T ss_dssp             HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCSC--H--H-----
T ss_pred             HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHh-----cCCceEEEeehHhccCc--H--H-----
Confidence            2222144567888888875 22111            1112222221     12499999999998765  1  1     


Q ss_pred             CCCchHHHHHHHcCCcE-----EEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985          164 ECPKPLKEILQLCENRR-----VLFDNKTKDAATRTEQVGKLISLVNSVILENG  212 (259)
Q Consensus       164 ~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~  212 (259)
                         ...+.+.+..+..+     .++..++..+    .++.++++.+.+.+.+..
T Consensus       140 ---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~----~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          140 ---EVINFLAEKFEVPLSEIDKVFIPISAKFG----DNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             ---HHHHHHHHHHTCCGGGHHHHEEECCTTTC----TTHHHHHHHHHHHHHHC-
T ss_pred             ---HHHHHHHHHhhhhhhccCCcEEEEecCCC----CCHHHHHHHHHHhcchhh
Confidence               12334445444321     2345554444    789999999988876643

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.75  E-value=8e-19  Score=141.13  Aligned_cols=165  Identities=15%  Similarity=0.063  Sum_probs=98.9

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ......+|+++|.+|||||||+|+++............+.|......... ..+..+.+|||||.......         
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~---------   80 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGPIKFNVWDTAGQEKFGGL---------   80 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEET-TEEEEEEEEEECSGGGTSCC---------
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCChHHHhHH---------
Confidence            34456899999999999999999965443211112233444433333221 23357999999995432211         


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                        ....+..+|++|+|+|++++.+... ..++..+.....   ..|+++|+||+|+...  ....         ....+.
T Consensus        81 --~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~---------~~~~~~  144 (221)
T 3gj0_A           81 --RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKDR--KVKA---------KSIVFH  144 (221)
T ss_dssp             --CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSSC--SSCG---------GGCCHH
T ss_pred             --HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCccccc--cccH---------HHHHHH
Confidence              1123346799999999985433322 344445544322   3499999999998754  1111         122233


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      ...+..+  |..++..+    .++.+++..|.+.+...
T Consensus       145 ~~~~~~~--~~~Sa~~~----~gi~~l~~~l~~~l~~~  176 (221)
T 3gj0_A          145 RKKNLQY--YDISAKSN----YNFEKPFLWLARKLIGD  176 (221)
T ss_dssp             HHHTCEE--EECBGGGT----BTTTHHHHHHHHHHHTC
T ss_pred             HHcCCEE--EEEeCCCC----CCHHHHHHHHHHHHHhC
Confidence            4444443  44444333    78999999998887654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.75  E-value=9e-18  Score=132.16  Aligned_cols=160  Identities=9%  Similarity=0.040  Sum_probs=91.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ....+|+++|++|||||||+|++++......     ..|.......+. ..+..+.+|||||......           .
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~-----------~   89 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVE-YKNICFTVWDVGGQDKIRP-----------L   89 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEE-ETTEEEEEEECC-----CT-----------T
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEE-ECCEEEEEEECCCCHhHHH-----------H
Confidence            4568999999999999999999987764221     112222233333 4677999999999754321           1


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ....+..+|++|+|+|++++.+...  ...++......  ....|+++|+||+|+...  ...+++... ..      ..
T Consensus        90 ~~~~~~~~d~iilv~D~~~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-~~------~~  158 (192)
T 2b6h_A           90 WRHYFQNTQGLIFVVDSNDRERVQE--SADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDK-LG------LQ  158 (192)
T ss_dssp             HHHHHHTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-TT------GG
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHH-hC------cc
Confidence            1112346699999999985533322  22333332221  123599999999998654  222221110 00      00


Q ss_pred             Hc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          175 LC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       175 ~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      .+ ...+.++..++..+    .++.+|++.|.+.+
T Consensus       159 ~~~~~~~~~~~~SA~~g----~gi~~l~~~l~~~i  189 (192)
T 2b6h_A          159 HLRSRTWYVQATCATQG----TGLYDGLDWLSHEL  189 (192)
T ss_dssp             GCSSCCEEEEECBTTTT----BTHHHHHHHHHHHT
T ss_pred             cccCCceEEEECcCCCc----CCHHHHHHHHHHHH
Confidence            11 11234555555444    78999999887655

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.75  E-value=1.5e-17  Score=147.90  Aligned_cols=160  Identities=19%  Similarity=0.228  Sum_probs=101.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCC-CCCCChHHH-HHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF-DSSADSEFV-SKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~-~~~~~~~~~-~~~~~~~   96 (259)
                      ..+|+++|.+|||||||+|+|++.+.... ...+++|.+.....+. .++..+.+|||||+. .+...-+.. .......
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~v-s~~~gTT~d~~~~~i~-~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIV-TDIPGTTRDVISEEIV-IRGILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCC-CCSSCCSSCSCCEEEE-ETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCcc-CCCCCeeeeeEEEEEe-cCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            37899999999999999999998764222 2234566655555444 578899999999987 543211110 0111222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                          +..+|++|+|+|++++.+..+..+++.+    .   ..|+++|+||+|+...  ...+         .+..... .
T Consensus       321 ----~~~aD~vl~VvD~s~~~s~~~~~il~~l----~---~~piivV~NK~DL~~~--~~~~---------~~~~~~~-~  377 (482)
T 1xzp_A          321 ----IEKADIVLFVLDASSPLDEEDRKILERI----K---NKRYLVVINKVDVVEK--INEE---------EIKNKLG-T  377 (482)
T ss_dssp             ----HHHCSEEEEEEETTSCCCHHHHHHHHHH----T---TSSEEEEEEECSSCCC--CCHH---------HHHHHHT-C
T ss_pred             ----hhcccEEEEEecCCCCCCHHHHHHHHHh----c---CCCEEEEEECcccccc--cCHH---------HHHHHhc-C
Confidence                2345999999999877777766655443    1   2499999999998643  1111         1222211 1


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      +..++..+..  .    ..|+.+|++.|.+.+.
T Consensus       378 ~~~~i~iSAk--t----g~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          378 DRHMVKISAL--K----GEGLEKLEESIYRETQ  404 (482)
T ss_dssp             STTEEEEEGG--G----TCCHHHHHHHHHHHTH
T ss_pred             CCcEEEEECC--C----CCCHHHHHHHHHHHHh
Confidence            1244444443  2    2789999999988644

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.75  E-value=4.6e-17  Score=140.31  Aligned_cols=168  Identities=14%  Similarity=0.121  Sum_probs=106.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh-HHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS-EFVSKEIVK   95 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~-~~~~~~~~~   95 (259)
                      ...++|+++|.+|||||||+|+|++......  ...+.|.......+. ..+..+.+|||||+.+..... .....   .
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~---~  238 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIA--SYPFTTRGINVGQFE-DGYFRYQIIDTPGLLDRPISERNEIEK---Q  238 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEE--CCTTCSSCEEEEEEE-ETTEEEEEEECTTTSSSCSTTSCHHHH---H
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCeeeceeEEEEE-ecCceEEEEeCCCccccchhhhhHHHH---H
Confidence            4568999999999999999999999874222  223445555544443 456789999999987543211 11111   1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCC--CHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRF--SEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI  172 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~--~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (259)
                      .+......+|++|+|+|++...  +... ..++..+...++   ..|+++|+||+|+...  ..++         .....
T Consensus       239 ~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~--~~~~---------~~~~~  304 (357)
T 2e87_A          239 AILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADE--ENIK---------RLEKF  304 (357)
T ss_dssp             HHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCH--HHHH---------HHHHH
T ss_pred             HHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCCh--HHHH---------HHHHH
Confidence            1222334679999999987432  4333 456666666542   3599999999998754  2222         12233


Q ss_pred             HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +...+..++.+++.  .+    .|+.+|++.|.+.+..
T Consensus       305 ~~~~~~~~~~iSA~--~g----~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          305 VKEKGLNPIKISAL--KG----TGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             HHHTTCCCEECBTT--TT----BTHHHHHHHHHHHHHH
T ss_pred             HHhcCCCeEEEeCC--CC----cCHHHHHHHHHHHHHH
Confidence            33444444444433  22    7999999999887754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.75  E-value=1.8e-17  Score=129.64  Aligned_cols=161  Identities=16%  Similarity=0.079  Sum_probs=96.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI   93 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~   93 (259)
                      .....+|+++|.+|||||||+|++++...... ..+   |.......+. .++  ..+.+|||||....        .  
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-~~~---t~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~--------~--   81 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQE-ESP---EGGRFKKEIV-VDGQSYLLLIRDEGGPPEL--------Q--   81 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCC-CCT---TCEEEEEEEE-ETTEEEEEEEEECSSSCCH--------H--
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCC---CcceEEEEEE-ECCEEEEEEEEECCCChhh--------h--
Confidence            34578999999999999999999997764221 111   2111112222 445  36778999996531        0  


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI  172 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (259)
                        .    +..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+.......+       .......+
T Consensus        82 --~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v-------~~~~~~~~  147 (184)
T 3ihw_A           82 --F----AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVI-------DDSRARKL  147 (184)
T ss_dssp             --H----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCS-------CHHHHHHH
T ss_pred             --e----ecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccccccc-------CHHHHHHH
Confidence              2    223599999999985444333 334444443211 12359999999999853210111       12234556


Q ss_pred             HHHcC-CcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          173 LQLCE-NRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       173 ~~~~~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      ....+ ..++..++  ..+    .++.+++..+.+.+.+.
T Consensus       148 ~~~~~~~~~~e~Sa--~~~----~gv~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          148 STDLKRCTYYETCA--TYG----LNVERVFQDVAQKVVAL  181 (184)
T ss_dssp             HHHTTTCEEEEEBT--TTT----BTHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCeEEEecC--CCC----CCHHHHHHHHHHHHHHH
Confidence            66655 33433333  333    78999999988766543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.75  E-value=2.3e-17  Score=127.73  Aligned_cols=160  Identities=17%  Similarity=0.147  Sum_probs=93.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      .+..+|+++|.+|||||||+|++++.....  ..+...+..  ...+. .++  ..+.+|||||...            .
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~--~~~~~-~~~~~~~l~i~Dt~G~~~------------~   67 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQY--KKEML-VDGQTHLVLIREEAGAPD------------A   67 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEE--EEEEE-ETTEEEEEEEEECSSSCC------------H
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeE--EEEEE-ECCEEEEEEEEECCCCch------------h
Confidence            356899999999999999999999876522  111111111  11122 333  3688999999653            0


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc-cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK-KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI  172 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (259)
                      .    .+..+|++|+|+|++++.+... ..+++++...... ....|+++|+||+|+........       .......+
T Consensus        68 ~----~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v-------~~~~~~~~  136 (178)
T 2iwr_A           68 K----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV-------GDARARAL  136 (178)
T ss_dssp             H----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCS-------CHHHHHHH
T ss_pred             H----HHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcC-------CHHHHHHH
Confidence            1    1234599999999985544333 2334455553321 12349999999999853210000       11233444


Q ss_pred             HHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          173 LQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ....++ +.+|..++..+    .++.++++.+...+.
T Consensus       137 ~~~~~~-~~~~~~Sa~~~----~~i~~lf~~l~~~~~  168 (178)
T 2iwr_A          137 XADMKR-CSYYETXATYG----LNVDRVFQEVAQKVV  168 (178)
T ss_dssp             HHHHSS-EEEEEEBTTTT----BTHHHHHHHHHHHHH
T ss_pred             HHhhcC-CeEEEEecccc----CCHHHHHHHHHHHHH
Confidence            444432 23344444333    789999998876654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.75  E-value=1.4e-18  Score=152.21  Aligned_cols=168  Identities=15%  Similarity=0.140  Sum_probs=103.5

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      +....++|+++|.+|+|||||+|+|++....... ...++|.......+.......+.+|||||+.+.............
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHH
Confidence            3446789999999999999999999998753222 245566666665555333348999999998765422111111222


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                          ..+..+|++|+|+|+  .....+..++..+.+. +    .|+++|+||+|+......           ...+.+.+
T Consensus       109 ----~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-~----~piIvV~NK~Dl~~~~~~-----------~~~~~l~~  166 (423)
T 3qq5_A          109 ----RVFYRADCGILVTDS--APTPYEDDVVNLFKEM-E----IPFVVVVNKIDVLGEKAE-----------ELKGLYES  166 (423)
T ss_dssp             ----HHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-T----CCEEEECCCCTTTTCCCT-----------HHHHHSSC
T ss_pred             ----HHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-C----CCEEEEEeCcCCCCccHH-----------HHHHHHHH
Confidence                234567999999998  5667777888888774 3    399999999998865211           11222222


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      .++..  ++..++..+    .++.+|++.|.+.+++.
T Consensus       167 ~~g~~--v~~vSAktg----~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          167 RYEAK--VLLVSALQK----KGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CTTCC--CCCCSSCCT----TSTTTHHHHHHHHSCCC
T ss_pred             HcCCC--EEEEECCCC----CCHHHHHHHHHHhhhhh
Confidence            33333  333343333    78999999999988544

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.74  E-value=3.1e-17  Score=131.37  Aligned_cols=170  Identities=15%  Similarity=0.074  Sum_probs=100.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+++|.+|||||||+|++++.......   .+ |....+. .+.. .....+.||||||...           +.
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~---~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~   89 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETY---VP-TVFENYTACLETEEQRVELSLWDTSGSPY-----------YD   89 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSC---CC-CSEEEEEEEEEC--CEEEEEEEEECCSGG-----------GT
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCc---CC-eeeeeEEEEEEECCEEEEEEEEECCCCHh-----------HH
Confidence            35689999999999999999999987642211   11 2111111 1111 2234789999999542           22


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh----CCCCCch
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL----GPECPKP  168 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~----~~~~~~~  168 (259)
                      ......+..+|++|+|+|++++.+...  ..++..+.... .  ..|+++|+||+|+..+. .....+.    .......
T Consensus        90 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~--~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~  165 (214)
T 3q3j_B           90 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-P--STRVLLIGCKTDLRTDL-STLMELSHQKQAPISYEQ  165 (214)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-T--TSEEEEEEECGGGGGCH-HHHHHHHHTTCCCCCHHH
T ss_pred             HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEChhhccch-hhhhhhcccccCccCHHH
Confidence            233446778999999999985544333  34555565532 2  34999999999987431 0000000    0011223


Q ss_pred             HHHHHHHcCCcEEEEeCCCcccccchhH-HHHHHHHHHHHHHH
Q 024985          169 LKEILQLCENRRVLFDNKTKDAATRTEQ-VGKLISLVNSVILE  210 (259)
Q Consensus       169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~eLl~~i~~~~~~  210 (259)
                      ...+....+.. .+|..++..+    .+ +.+|++.+...+.+
T Consensus       166 ~~~~~~~~~~~-~~~e~SA~~g----~g~v~~lf~~l~~~~~~  203 (214)
T 3q3j_B          166 GCAIAKQLGAE-IYLEGSAFTS----EKSIHSIFRTASMLCLN  203 (214)
T ss_dssp             HHHHHHHHTCS-EEEECCTTTC----HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCC-EEEEeccCCC----cccHHHHHHHHHHHHhc
Confidence            44555665541 2444444443    67 99999998887654

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.74  E-value=2.2e-17  Score=139.40  Aligned_cols=171  Identities=18%  Similarity=0.120  Sum_probs=101.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHH-HHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI-VKCI   97 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~-~~~~   97 (259)
                      ..+|+++|.+|||||||+|++++....... ...+.|...........++..+.+|||||...       ....+ ....
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~   74 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV-------FMENYFTKQK   74 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGG-GGCCCCCSEEEEEEEETTTEEEEEEEECCSHH-------HHHHHHTTTH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccc-cCcCCccceEEEEEEeCCceEEEEEECCCcHH-------HhhhhhhhHH
Confidence            579999999999999999999887432221 13455666666555433567999999999532       11111 1222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGG-AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+.++|++|+|+|+++..+..+. .+..++..........|+++|+||+|+...  +...+... .....+..+.+..
T Consensus        75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~--~~r~~~~~-v~~~~~~~~~~~~  151 (307)
T 3r7w_A           75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL--DKREELFQ-IMMKNLSETSSEF  151 (307)
T ss_dssp             HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHH-HHHHHHHHHHHTT
T ss_pred             HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch--hhhhHHHH-HHHHHHHHHHHHc
Confidence            3345688999999999865554443 344445443322223599999999998863  22221110 0012445566665


Q ss_pred             CC-cEEEEeCCCcccccchhHHHHHHHHHH
Q 024985          177 EN-RRVLFDNKTKDAATRTEQVGKLISLVN  205 (259)
Q Consensus       177 ~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~  205 (259)
                      +. ...++..++.+     .++.+++..+.
T Consensus       152 g~~~~~~~~tSa~~-----~~i~e~~~~iv  176 (307)
T 3r7w_A          152 GFPNLIGFPTSIWD-----ESLYKAWSQIV  176 (307)
T ss_dssp             TCCSCEEEECCTTS-----SHHHHHHHHHH
T ss_pred             CCCCeEEEEeeecC-----ChHHHHHHHHH
Confidence            52 23455555443     45666555443

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.74  E-value=1.8e-17  Score=131.88  Aligned_cols=168  Identities=16%  Similarity=0.102  Sum_probs=98.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|.+|||||||+|+|++.......   .+++.......+. .++  ..+.+|||||.....           .
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~-----------~   88 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVY---VPTVFENYVADIE-VDGKQVELALWDTAGQEDYD-----------R   88 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC----------CCEEEEEEE-ETTEEEEEEEEECTTCTTCT-----------T
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCCcC---CCcccceEEEEEE-ECCEEEEEEEEECCCcHHHH-----------H
Confidence            4579999999999999999999987652211   1111111111122 344  478999999975432           1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHh--HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh----CCC-CCch
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEE--GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL----GPE-CPKP  168 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~----~~~-~~~~  168 (259)
                      ........+|++|+|+|++++.+..  +..++..+.....   ..|+++|+||+|+...  ....+.+    ... ....
T Consensus        89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~  163 (207)
T 2fv8_A           89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLRSD--EHVRTELARMKQEPVRTDD  163 (207)
T ss_dssp             TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHHH
T ss_pred             HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhhcc--ccchhhhhhcccCCCCHHH
Confidence            2234567889999999998432222  2345555555321   3499999999998754  2222211    100 0112


Q ss_pred             HHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          169 LKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ...+....+.. .++..++..+    .|+.+|++.|.+.+..
T Consensus       164 ~~~~~~~~~~~-~~~~~SA~~g----~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          164 GRAMAVRIQAY-DYLECSAKTK----EGVREVFETATRAALQ  200 (207)
T ss_dssp             HHHHHHHTTCS-EEEECCTTTC----TTHHHHHHHHHHHHHS
T ss_pred             HHHHHHhcCCC-EEEEeeCCCC----CCHHHHHHHHHHHHHH
Confidence            33444444431 3444454443    7999999999887653

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.74  E-value=4.8e-17  Score=145.22  Aligned_cols=165  Identities=18%  Similarity=0.256  Sum_probs=106.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc-----ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFK-----SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE   92 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~-----~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~   92 (259)
                      ..++|+++|.+++|||||+|+|++.....     ......+.|....+..+. .++..+.+|||||.           ..
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~i~iiDtPGh-----------~~   85 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFK-LENYRITLVDAPGH-----------AD   85 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEE-ETTEEEEECCCSSH-----------HH
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEE-ECCEEEEEEECCCh-----------HH
Confidence            35899999999999999999999876100     111223456555554444 46789999999994           23


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985           93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI  172 (259)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (259)
                      +...+...+..+|++|+|+|++++...++.+.+..+.. .+.    |+++|+||+|+.+.  ..++....     .++.+
T Consensus        86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~i----p~IvviNK~Dl~~~--~~~~~~~~-----~l~~~  153 (482)
T 1wb1_A           86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FNI----PIIVVITKSDNAGT--EEIKRTEM-----IMKSI  153 (482)
T ss_dssp             HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CBCEEEECTTSSCH--HHHHHHHH-----HHHHH
T ss_pred             HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cCC----CEEEEEECCCcccc--hhHHHHHH-----HHHHH
Confidence            44444556678899999999987888888877776655 443    78999999998853  33332222     34455


Q ss_pred             HHHc-CC-cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          173 LQLC-EN-RRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       173 ~~~~-~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +... +. ...++..++..+    .++.+|++.|.+.++.
T Consensus       154 l~~~~~~~~~~ii~vSA~~g----~gI~~L~~~L~~~i~~  189 (482)
T 1wb1_A          154 LQSTHNLKNSSIIPISAKTG----FGVDELKNLIITTLNN  189 (482)
T ss_dssp             HHHSSSGGGCCEEECCTTTC----TTHHHHHHHHHHHHHH
T ss_pred             HhhhcccccceEEEEECcCC----CCHHHHHHHHHHhhcC
Confidence            5444 21 122344444333    7899999999988763

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.73  E-value=4.8e-17  Score=126.93  Aligned_cols=169  Identities=13%  Similarity=0.052  Sum_probs=98.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEE-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM-QRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI   93 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~-~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~   93 (259)
                      ....+|+++|.+|||||||+|++++...... .  .+ |..... ..+. .++  ..+.+|||||....           
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~--~~-t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~-----------   68 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPEN-Y--VP-TVFENYTASFE-IDTQRIELSLWDTSGSPYY-----------   68 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-C--CC-CSEEEEEEEEE-CSSCEEEEEEEEECCSGGG-----------
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCC-C--CC-ccceeEEEEEE-ECCEEEEEEEEECCCChhh-----------
Confidence            4568999999999999999999998764211 1  11 111111 1122 222  47899999996422           


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC----CCCc
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP----ECPK  167 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~----~~~~  167 (259)
                      .......+..+|++|+|+|++++.+...  ..++..+.....   ..|+++|+||+|+.... ....++...    -...
T Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~  144 (184)
T 1m7b_A           69 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYD  144 (184)
T ss_dssp             TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHH
T ss_pred             hhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhhcch-hhHhhhhhcccCCCCHH
Confidence            1223345678899999999985433333  234455544321   35999999999987431 111111110    0112


Q ss_pred             hHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          168 PLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ....+....+.. .++..++..   ...++.++++.+.+.+.
T Consensus       145 ~~~~~~~~~~~~-~~~e~Sa~~---~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          145 QGANMAKQIGAA-TYIECSALQ---SENSVRDIFHVATLACV  182 (184)
T ss_dssp             HHHHHHHHHTCS-EEEECBTTT---BHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCc-EEEEeeecC---CCcCHHHHHHHHHHHHh
Confidence            344555555522 234444431   12789999998877653

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.73  E-value=1.7e-19  Score=142.80  Aligned_cols=162  Identities=16%  Similarity=0.147  Sum_probs=92.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ...++|+|+|.+|||||||+|+|++.......  ..+.+.......+. .++  ..+.+|||||......          
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~----------   97 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQERFRT----------   97 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHH--HHHHCCSEEEEEEE-ETTEEEEEEEECCTTCTTCCC----------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCcccceEEEEEEE-ECCEEEEEEEEECCCcHhHHH----------
Confidence            34689999999999999999999987642221  11222223333333 344  4799999999654321          


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                       .....+..+|++|+|+|++++.+... ..++..+.....  ...|+++|+||+|+....  ...       ......+.
T Consensus        98 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~--~v~-------~~~~~~~~  165 (199)
T 3l0i_B           98 -ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKK--VVD-------YTTAKEFA  165 (199)
T ss_dssp             -CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC--C--CCC-------SCC-CHHH
T ss_pred             -HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCccc--cCC-------HHHHHHHH
Confidence             12234567899999999985433222 233343433222  135999999999987541  111       11233444


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ...+..  ++..++..+    .++.+|++.|.+.+.
T Consensus       166 ~~~~~~--~~~vSA~~g----~gv~~l~~~l~~~l~  195 (199)
T 3l0i_B          166 DSLGIP--FLETSAKNA----TNVEQSFMTMAAEIK  195 (199)
T ss_dssp             HTTTCC--BCCCCC-------HHHHHHHHHHTTTTT
T ss_pred             HHcCCe--EEEEECCCC----CCHHHHHHHHHHHHH
Confidence            444443  344444333    899999998876554

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.73  E-value=2e-16  Score=126.45  Aligned_cols=164  Identities=17%  Similarity=0.112  Sum_probs=93.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc-ccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA-FKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ...+|+|+|.+|||||||+|++++... +.....+.+.+....  .+. .++.  .+.+|||+|...     .     ..
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~--~i~-~~~~~~~l~~~Dt~g~~~-----~-----~~  102 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYER--TLM-VDGESATIILLDMWENKG-----E-----NE  102 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEE--EEE-ETTEEEEEEEECCTTTTH-----H-----HH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEE--EEE-ECCeeeEEEEeecCCCcc-----h-----hh
Confidence            348999999999999999999997543 222212222222111  122 3444  568899999431     0     11


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      .....++..+|++|+|+|++++-+... ..++..+.... .....|+++|+||+|+....  .+.       ....+.+.
T Consensus       103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~-~~~~~piilVgNK~DL~~~r--~v~-------~~e~~~~a  172 (211)
T 2g3y_A          103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVRCR--EVS-------VSEGRACA  172 (211)
T ss_dssp             HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSG-GGTTSCEEEEEECTTCGGGC--CSC-------HHHHHHHH
T ss_pred             hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEChHHhcCc--eEe-------HHHHHHHH
Confidence            122445678899999999985433322 22333343321 11235999999999986431  110       01122333


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ...+..  +|..++..+    .++.+|++.+...+..
T Consensus       173 ~~~~~~--~~e~SAk~g----~~v~elf~~l~~~i~~  203 (211)
T 2g3y_A          173 VVFDCK--FIETSAAVQ----HNVKELFEGIVRQVRL  203 (211)
T ss_dssp             HHHTCE--EEECBTTTT----BSHHHHHHHHHHHHHH
T ss_pred             HHcCCE--EEEEeCCCC----CCHHHHHHHHHHHHHH
Confidence            333433  444554443    7899999988776643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.73  E-value=1.5e-17  Score=132.21  Aligned_cols=166  Identities=15%  Similarity=0.026  Sum_probs=98.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+++|.+|||||||++++++......   ..+++.......+. .++.  .+.+|||||...           +.
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~   92 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGE---YIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED-----------YD   92 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC----CCCCSEEEEEEEEE-CC-CEEEEEEEEECCSGG-----------GT
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCC---cCCeecceeEEEEE-ECCEEEEEEEEECCCchh-----------hH
Confidence            4568999999999999999999997654221   12222222222222 3444  566999999642           22


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhC-----CCCCc
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLG-----PECPK  167 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~-----~~~~~  167 (259)
                      ......+..+|++++|+|++++.+..+.  .++..+....   ...|+++|+||+|+...  ....+...     .....
T Consensus        93 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~  167 (204)
T 4gzl_A           93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP  167 (204)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHH
T ss_pred             HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccc--hhhhhhhhccccccccHH
Confidence            2334466788999999999855444332  3555555432   23599999999998765  22211110     00112


Q ss_pred             hHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          168 PLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      ....+.+..+.. .+|..++..+    .|+.+|++.+.+.
T Consensus       168 ~~~~~~~~~~~~-~~~~~SA~~g----~gi~~l~~~l~~~  202 (204)
T 4gzl_A          168 QGLAMAKEIGAV-KYLECSALTQ----RGLKTVFDEAIRA  202 (204)
T ss_dssp             HHHHHHHHTTCS-EEEECCTTTC----TTHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCc-EEEEeeCCCC----CCHHHHHHHHHHH
Confidence            333444454433 2444554443    7899999987653

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.73  E-value=2.5e-17  Score=140.33  Aligned_cols=158  Identities=9%  Similarity=0.015  Sum_probs=94.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ...+|+|+|.+|||||||+|+|++......     ..|.......+. ..+..+.||||||......           ..
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~-----------~~  226 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVE-YKNISFTVWDVGGQDKIRP-----------LW  226 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEEE-ETTEEEEEEECC-----CC-----------SH
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEEe-cCcEEEEEEECCCCHhHHH-----------HH
Confidence            346899999999999999999998774221     124444444444 5678999999999543221           12


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ...+..+|++|+|+|+++.-+...  ..+...+.....  ...|++||+||+|+...  ...+++.         .....
T Consensus       227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~--~~~piilV~NK~Dl~~~--~~~~~i~---------~~~~~  293 (329)
T 3o47_A          227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL--RDAVLLVFANKQDLPNA--MNAAEIT---------DKLGL  293 (329)
T ss_dssp             HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTSTTC--CCHHHHH---------HHHTC
T ss_pred             HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhcc--CCCeEEEEEECccCCcc--cCHHHHH---------HHhch
Confidence            223457799999999985544332  222222222111  23499999999998765  2222111         11111


Q ss_pred             c---CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          176 C---ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       176 ~---~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .   ...+.+|..++..+    .|+.+|++.|.+.+.
T Consensus       294 ~~~~~~~~~~~~vSAk~g----~gi~el~~~l~~~l~  326 (329)
T 3o47_A          294 HSLRHRNWYIQATCATSG----DGLYEGLDWLSNQLR  326 (329)
T ss_dssp             TTCCSSCEEEEECBTTTT----BTHHHHHHHHHHHHT
T ss_pred             hhhhcCCCEEEEEECCCC----cCHHHHHHHHHHHHH
Confidence            0   12234555555444    799999999888764

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.73  E-value=6.9e-17  Score=128.51  Aligned_cols=172  Identities=13%  Similarity=0.050  Sum_probs=98.7

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEE-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHH
Q 024985           14 SPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEM-QRTMLKDG--QVVNVIDTPGLFDSSADSEFVS   90 (259)
Q Consensus        14 s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~-~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~   90 (259)
                      +......+|+++|.+|||||||+|++++...... .  . .|....+ ..+. .++  ..+.||||||....        
T Consensus        23 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-~--~-~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~--------   89 (205)
T 1gwn_A           23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPEN-Y--V-PTVFENYTASFE-IDTQRIELSLWDTSGSPYY--------   89 (205)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-C--C-CCSEEEEEEEEE-SSSSEEEEEEEEECCSGGG--------
T ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCC-c--C-CccceeEEEEEE-ECCEEEEEEEEeCCCcHhh--------
Confidence            3345678999999999999999999998764211 1  1 1211111 1122 232  47999999996422        


Q ss_pred             HHHHHHHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC----C
Q 024985           91 KEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP----E  164 (259)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~----~  164 (259)
                         .......+..+|++|+|+|++++.+...  ..++..+.....   ..|+++|+||+|+.... ....++...    -
T Consensus        90 ---~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v  162 (205)
T 1gwn_A           90 ---DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDV-STLVELSNHRQTPV  162 (205)
T ss_dssp             ---TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGGCH-HHHHHHHTTTCCCC
T ss_pred             ---hHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhccch-hhhhhhcccccCCC
Confidence               1122345678899999999985433332  234455554322   35999999999987431 111111110    0


Q ss_pred             CCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          165 CPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       165 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .......+.+..+.. .+|..++..   ...++.+++..+.+.+-
T Consensus       163 ~~~~~~~~~~~~~~~-~~~e~SAk~---~~~gv~~lf~~l~~~~l  203 (205)
T 1gwn_A          163 SYDQGANMAKQIGAA-TYIECSALQ---SENSVRDIFHVATLACV  203 (205)
T ss_dssp             CHHHHHHHHHHHTCS-EEEECCTTT---CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCC-EEEEeeecc---CCcCHHHHHHHHHHHHh
Confidence            112344555555532 244444431   12789999998877653

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.72  E-value=1e-16  Score=137.87  Aligned_cols=130  Identities=14%  Similarity=0.134  Sum_probs=74.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC---CCc-----------------------cee--------------
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS---SGV-----------------------TKT--------------   57 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~---~~~-----------------------T~~--------------   57 (259)
                      ..++|+|+|.+|||||||+|+|+|....+.....   .+.                       |..              
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            4579999999999999999999998754222110   011                       000              


Q ss_pred             ---------eEEEEEEeeCCcEEEEEeCCCCCCCCCC--hHHHHHHHHHHHhhcC-CCccEEEEEEeCCCCCCHhHH-HH
Q 024985           58 ---------CEMQRTMLKDGQVVNVIDTPGLFDSSAD--SEFVSKEIVKCIGMAK-DGIHAVLLVFSVRNRFSEEGG-AA  124 (259)
Q Consensus        58 ---------~~~~~~~~~~~~~~~liDTPG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~il~v~d~~~~~~~~~~-~~  124 (259)
                               .....+....+..+.||||||+......  .......+...+..+. ...+++|+|+|++..+...+. .+
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i  189 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV  189 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence                     0001111122467999999999753211  1111122222222222 344677778888755665553 23


Q ss_pred             HHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          125 IHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       125 l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ++.+..     ...|+++|+||+|+...
T Consensus       190 ~~~~~~-----~~~~~i~V~NK~Dl~~~  212 (353)
T 2x2e_A          190 AKEVDP-----QGQRTIGVITKLDLMDE  212 (353)
T ss_dssp             HHHHCT-----TCTTEEEEEECGGGSCT
T ss_pred             HHHhCc-----CCCceEEEeccccccCc
Confidence            333322     23499999999999854

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.72  E-value=6.7e-17  Score=126.59  Aligned_cols=162  Identities=19%  Similarity=0.106  Sum_probs=94.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+++|.+|||||||+|++++.... ...  .+ |....+......++  ..+.+|||||......        +.
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~~--~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~   86 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFI-SEY--DP-NLEDTYSSEETVDHQPVHLRVMDTADLDTPRN--------CE   86 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCC-SCC--CT-TCCEEEEEEEEETTEEEEEEEEECCC---CCC--------TH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCC-ccc--CC-CccceeeEEEEECCEEEEEEEEECCCCCcchh--------HH
Confidence            35689999999999999999999987642 111  11 22111111111233  4788999999754321        11


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcc-cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGK-KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI  172 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (259)
                          ..+..+|++++|+|++++-+... ..++..+...... ....|+++|+||+|+....  .+       .......+
T Consensus        87 ----~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--~v-------~~~~~~~~  153 (187)
T 3c5c_A           87 ----RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYR--QV-------TKAEGVAL  153 (187)
T ss_dssp             ----HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGC--SS-------CHHHHHHH
T ss_pred             ----HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcC--cc-------CHHHHHHH
Confidence                12346799999999984433322 2344445443210 1234999999999986431  11       11234455


Q ss_pred             HHHcCCcEEEEeCCC-cccccchhHHHHHHHHHHHHHH
Q 024985          173 LQLCENRRVLFDNKT-KDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~-~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ....+..  ++..++ ..+    .++.++++.|.+.+.
T Consensus       154 ~~~~~~~--~~e~Sa~~~g----~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          154 AGRFGCL--FFEVSACLDF----EHVQHVFHEAVREAR  185 (187)
T ss_dssp             HHHHTCE--EEECCSSSCS----HHHHHHHHHHHHHHH
T ss_pred             HHHcCCc--EEEEeecCcc----ccHHHHHHHHHHHHh
Confidence            5555544  444444 333    799999998877654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.72  E-value=2.4e-16  Score=135.76  Aligned_cols=175  Identities=13%  Similarity=0.074  Sum_probs=99.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      .+.|+++|++|||||||+|+|++......  ...++|.+.....+. .++..+.++||||+.....  ..+...+...+.
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~--~~~~~T~d~~~~~i~-~~g~~v~l~DT~G~i~~lp--~~lve~f~~tl~  253 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVD--TKLFTTMSPKRYAIP-INNRKIMLVDTVGFIRGIP--PQIVDAFFVTLS  253 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEE-ETTEEEEEEECCCBCSSCC--GGGHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCcccc--CCcccccCCEEEEEE-ECCEEEEEEeCCCchhcCC--HHHHHHHHHHHH
Confidence            34599999999999999999999875222  234455555444444 5678899999999754211  112223333332


Q ss_pred             hcCCCccEEEEEEeCCCCC--CHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           99 MAKDGIHAVLLVFSVRNRF--SEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~--~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                       ....+|++++|+|++++.  .... ..+.+.+.. ++. ...|+++|+||+|+...  . ......     .+..+...
T Consensus       254 -~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~-~~~p~ilV~NK~Dl~~~--~-~~~~~~-----~~~~l~~~  322 (364)
T 2qtf_A          254 -EAKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGV-SGKPILVTLNKIDKING--D-LYKKLD-----LVEKLSKE  322 (364)
T ss_dssp             -GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTC-CSCCEEEEEECGGGCCS--C-HHHHHH-----HHHHHHHH
T ss_pred             -HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCc-CCCCEEEEEECCCCCCc--h-HHHHHH-----HHHHHHHH
Confidence             456779999999997443  1111 122334444 221 13499999999998754  1 111000     11122233


Q ss_pred             c-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhCC
Q 024985          176 C-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENGG  213 (259)
Q Consensus       176 ~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~  213 (259)
                      . ...+.++..++.++    .++.+|++.|.+.+.....
T Consensus       323 l~~~~~~~~~~SA~~g----~gi~~L~~~I~~~l~~~~~  357 (364)
T 2qtf_A          323 LYSPIFDVIPISALKR----TNLELLRDKIYQLATQLSL  357 (364)
T ss_dssp             HCSCEEEEEECBTTTT----BSHHHHHHHHHHHHHHHC-
T ss_pred             hcCCCCcEEEEECCCC----cCHHHHHHHHHHHhcccCC
Confidence            3 22223344444443    7999999999998877544

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.72  E-value=2.2e-17  Score=131.68  Aligned_cols=170  Identities=16%  Similarity=0.066  Sum_probs=100.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+++|.+|+|||||+|++++..... ..  .+++.......+. .++  ..+.+|||||......          
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~-~~--~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~----------   72 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPT-DY--IPTVFDNFSANVA-VDGQIVNLGLWDTAGQEDYSR----------   72 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCS-SC--CCSSCCCEEEEEE-CSSCEEEEEEECCCCCCCCCC----------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCc-cC--CCccceeEEEEEE-ECCEEEEEEEEECCCcHHHHH----------
Confidence            356899999999999999999999766421 11  1111111111222 333  4899999999764321          


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhh-hCCCCCchHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDY-LGPECPKPLKE  171 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~-~~~~~~~~l~~  171 (259)
                       .....+..+|++|+|+|++++.+...  ..++..+.....   ..|+++|+||+|+...  ...... ...-.......
T Consensus        73 -~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~v~~~~~~~  146 (212)
T 2j0v_A           73 -LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRDD--KGYLADHTNVITSTQGEE  146 (212)
T ss_dssp             ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC--HHHHHTCSSCCCHHHHHH
T ss_pred             -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhhC--ccccccccCCCCHHHHHH
Confidence             12335678899999999985433332  135555554322   3599999999998754  211000 00001123445


Q ss_pred             HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      +....+.. .+|..++..+    .++.++++.+.+.+.+.
T Consensus       147 ~~~~~~~~-~~~~~Sa~~g----~gi~~l~~~l~~~~~~~  181 (212)
T 2j0v_A          147 LRKQIGAA-AYIECSSKTQ----QNVKAVFDTAIKVVLQP  181 (212)
T ss_dssp             HHHHHTCS-EEEECCTTTC----TTHHHHHHHHHHHHHCC
T ss_pred             HHHHcCCc-eEEEccCCCC----CCHHHHHHHHHHHHhhh
Confidence            55555531 2344444443    78999999998877654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.71  E-value=2e-17  Score=153.57  Aligned_cols=120  Identities=16%  Similarity=0.187  Sum_probs=77.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE--------EEEe------------------------
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ--------RTML------------------------   65 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~--------~~~~------------------------   65 (259)
                      ..++|+|+|.+|+|||||+|+|+|....+.+.  .++|..+...        ....                        
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~--~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~  145 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDV--NPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE  145 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCC--CTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCC--CCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence            56899999999999999999999998655443  2223100000        0000                        


Q ss_pred             ---------------------eCC----cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHh
Q 024985           66 ---------------------KDG----QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEE  120 (259)
Q Consensus        66 ---------------------~~~----~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~  120 (259)
                                           .+.    ..+.||||||+.+...        ...........+|++|||+|++++++..
T Consensus       146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~  217 (695)
T 2j69_A          146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLG  217 (695)
T ss_dssp             HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHH
T ss_pred             HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchh
Confidence                                 000    3689999999764211        1122222335679999999998778877


Q ss_pred             HHHHHH-HHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          121 GGAAIH-SLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       121 ~~~~l~-~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      +...+. .+.. .    ..|+++|+||+|+...
T Consensus       218 e~~~l~~~l~~-~----~~~iiiVlNK~Dl~~~  245 (695)
T 2j69_A          218 ERRYLENYIKG-R----GLTVFFLVNAWDQVRE  245 (695)
T ss_dssp             HHHHHHHHTTT-S----CCCEEEEEECGGGGGG
T ss_pred             HHHHHHHHHHh-h----CCCEEEEEECcccccc
Confidence            765553 2222 2    2489999999998743

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.71  E-value=1.4e-17  Score=129.30  Aligned_cols=167  Identities=17%  Similarity=0.058  Sum_probs=92.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+++|.+|+|||||+|++++..... .  ..+++.......+. .+  ...+.+|||||.....           
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~-~--~~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~-----------   70 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT-D--YVPTVFDNFSANVV-VNGATVNLGLWDTAGQEDYN-----------   70 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC-------------CBCCCC--------CEEECCCC-CTTT-----------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCC-C--CCCeeeeeEEEEEE-ECCEEEEEEEEECCCChhhh-----------
Confidence            346899999999999999999999766321 1  11111111101111 22  2356799999965422           


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhh---hCCCCCchH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDY---LGPECPKPL  169 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~---~~~~~~~~l  169 (259)
                      ......+..+|++++|+|++++.+....  .++..+.....   ..|+++|+||+|+...  ......   ...-.....
T Consensus        71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~v~~~~~  145 (182)
T 3bwd_D           71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRDD--KQFFIDHPGAVPITTVQG  145 (182)
T ss_dssp             TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC--HHHHHHC--CCCCCHHHH
T ss_pred             hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhcC--cccccccccCCCCCHHHH
Confidence            2223456678999999999854333332  35555555322   3599999999998754  221000   000011233


Q ss_pred             HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ..+....+.. .++..++..+    .++.+|++.+.+.+
T Consensus       146 ~~~~~~~~~~-~~~~~Sa~~~----~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          146 EELKKLIGAP-AYIECSSKSQ----ENVKGVFDAAIRVV  179 (182)
T ss_dssp             HHHHHHHTCS-EEEECCTTTC----TTHHHHHHHHHHHH
T ss_pred             HHHHHHcCCC-EEEEEECCCC----CCHHHHHHHHHHHH
Confidence            4455555531 2344444443    78999999887655

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.71  E-value=3.8e-16  Score=124.21  Aligned_cols=172  Identities=13%  Similarity=0.192  Sum_probs=97.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCC---hHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD---SEFVSKEIV   94 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~---~~~~~~~~~   94 (259)
                      ...+|+++|++|||||||+|+|+|...........+.|......  . ..+ .+.++||||+......   ...+...+.
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~--~-~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLF--E-VAD-GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEE--E-EET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEE--E-ecC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            45789999999999999999999876211111223444333322  1 222 6789999998643211   112222222


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ..+ .....++++++|+|++.+.+..+..+..++.. .+    .|+++|.||+|....  ......+     ..++.++.
T Consensus       101 ~~~-~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~----~~~~~v~nK~D~~s~--~~~~~~~-----~~~~~~~~  167 (210)
T 1pui_A          101 EYL-EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-SN----IAVLVLLTKADKLAS--GARKAQL-----NMVREAVL  167 (210)
T ss_dssp             HHH-HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSCH--HHHHHHH-----HHHHHHHG
T ss_pred             HHH-HhhhcccEEEEEEECCCCCchhHHHHHHHHHH-cC----CCeEEEEecccCCCc--hhHHHHH-----HHHHHHHH
Confidence            222 22356799999999986666655555555543 33    388999999998754  2111101     12334444


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..+.....+..++.++    .++.++++.|.+.+.+
T Consensus       168 ~~~~~~~~~~~Sal~~----~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          168 AFNGDVQVETFSSLKK----QGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             GGCSCEEEEECBTTTT----BSHHHHHHHHHHHHC-
T ss_pred             hcCCCCceEEEeecCC----CCHHHHHHHHHHHHhh
Confidence            4443444555555444    7899999998887654

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.71  E-value=3e-16  Score=145.35  Aligned_cols=125  Identities=16%  Similarity=0.217  Sum_probs=83.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCccee----------------------------------------
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKT----------------------------------------   57 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~----------------------------------------   57 (259)
                      ..++|+|+|.+++|||||+|+|+|...++.+..  .+|+.                                        
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g--~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~  127 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  127 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS--CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCc--cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence            457999999999999999999999886554432  12211                                        


Q ss_pred             -----------eEEEEEEeeCCcEEEEEeCCCCCCCCC--Ch----HHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHh
Q 024985           58 -----------CEMQRTMLKDGQVVNVIDTPGLFDSSA--DS----EFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEE  120 (259)
Q Consensus        58 -----------~~~~~~~~~~~~~~~liDTPG~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~  120 (259)
                                 .....+.......++||||||++....  ..    ..+...+..++.   ..+|++|+|+|++..+...
T Consensus       128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~---~~aDlIL~VVDAs~~~~~~  204 (772)
T 3zvr_A          128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT---KENCLILAVSPANSDLANS  204 (772)
T ss_dssp             HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT---STTEEEEEEEETTSCSSSC
T ss_pred             hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh---cCCcEEEEEEcCCCCcchh
Confidence                       111112223344689999999987431  11    223322333322   5789999999998777777


Q ss_pred             HH-HHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          121 GG-AAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       121 ~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      +. .+++.+.. .+    .|+++|+||+|++..
T Consensus       205 d~l~ll~~L~~-~g----~pvIlVlNKiDlv~~  232 (772)
T 3zvr_A          205 DALKIAKEVDP-QG----QRTIGVITKLDLMDE  232 (772)
T ss_dssp             HHHHHHHHHCT-TC----SSEEEEEECTTSSCT
T ss_pred             HHHHHHHHHHh-cC----CCEEEEEeCcccCCc
Confidence            75 55555543 22    499999999999865

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.71  E-value=1.7e-16  Score=140.19  Aligned_cols=121  Identities=18%  Similarity=0.221  Sum_probs=82.7

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCccccc-----------------------------CCCCCcceeeEEEEEEe
Q 024985           15 PSNAERTLVLVGRTGNGKSATGNSILGRRAFKSK-----------------------------AGSSGVTKTCEMQRTML   65 (259)
Q Consensus        15 ~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~-----------------------------~~~~~~T~~~~~~~~~~   65 (259)
                      ......+|+++|.+|+|||||+|+|++.......                             ....+.|.+.....+. 
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~-   91 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE-   91 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe-
Confidence            3456689999999999999999999654211000                             0113566666665555 


Q ss_pred             eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC-------HhHHHHHHHHHHHhcccccC
Q 024985           66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFS-------EEGGAAIHSLESLFGKKVFD  138 (259)
Q Consensus        66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~-------~~~~~~l~~l~~~~~~~~~~  138 (259)
                      ..+..+.||||||..           .+...+...+..+|++|+|+|++.+..       .++.+.+..+.. .+.   .
T Consensus        92 ~~~~~~~iiDTPGh~-----------~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v---~  156 (439)
T 3j2k_7           92 TEKKHFTILDAPGHK-----------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGV---K  156 (439)
T ss_pred             cCCeEEEEEECCChH-----------HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCC---C
Confidence            467799999999953           333344445567899999999986654       455555555544 343   2


Q ss_pred             eEEEEEeCCCCCC
Q 024985          139 YMIVVFTGGNELE  151 (259)
Q Consensus       139 ~~ivV~nk~D~~~  151 (259)
                      ++++|+||+|+..
T Consensus       157 ~iIvviNK~Dl~~  169 (439)
T 3j2k_7          157 HLIVLINKMDDPT  169 (439)
T ss_pred             eEEEEeecCCCcc
Confidence            4999999999864

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.70  E-value=9.2e-17  Score=143.68  Aligned_cols=152  Identities=14%  Similarity=0.144  Sum_probs=94.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc-----------------------------ccCCCCCcceeeEEEEEEeeCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFK-----------------------------SKAGSSGVTKTCEMQRTMLKDG   68 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~-----------------------------~~~~~~~~T~~~~~~~~~~~~~   68 (259)
                      ...+|+++|.+|+|||||+|+|++.....                             ......+.|.......+. ..+
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~  110 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-THR  110 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE-CSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe-cCC
Confidence            45899999999999999999997551100                             001113556666555554 467


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHhHHHHHHHHHHHhcccccCeEE
Q 024985           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-------FSEEGGAAIHSLESLFGKKVFDYMI  141 (259)
Q Consensus        69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i  141 (259)
                      ..+.||||||..+           +...+...+..+|++|+|+|++.+       +.....+.+..+.. ++.   .|++
T Consensus       111 ~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~---~~iI  175 (483)
T 3p26_A          111 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLI  175 (483)
T ss_dssp             CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC---CCEE
T ss_pred             ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC---CcEE
Confidence            7999999999743           233334445678999999999865       34555555555544 342   3799


Q ss_pred             EEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC---cEEEEeCCCccc
Q 024985          142 VVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN---RRVLFDNKTKDA  190 (259)
Q Consensus       142 vV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~  190 (259)
                      ||+||+|+........++...     .+..++..++.   ...++..++..+
T Consensus       176 vviNK~Dl~~~~~~~~~~i~~-----~~~~~l~~~g~~~~~~~~i~iSA~~g  222 (483)
T 3p26_A          176 IAMNKMDNVDWSQQRFEEIKS-----KLLPYLVDIGFFEDNINWVPISGFSG  222 (483)
T ss_dssp             EEEECGGGGTTCHHHHHHHHH-----HHHHHHHHHTCCGGGEEEEECCSSSC
T ss_pred             EEEECcCcccchHHHHHHHHH-----HHHHHHHHcCCCcccceEEEEeeecC
Confidence            999999987642223332222     34455555543   344555555443

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.70  E-value=2.8e-16  Score=135.58  Aligned_cols=129  Identities=22%  Similarity=0.247  Sum_probs=79.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCccee----------------------------------------
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKT----------------------------------------   57 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~----------------------------------------   57 (259)
                      .-+.|+|+|.+|||||||+|+|+|...++.+...  +|..                                        
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~--vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~  110 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI--VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE  110 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSS--CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCc--ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence            4569999999999999999999998764444221  1111                                        


Q ss_pred             --------------eEEEEEEeeCCcEEEEEeCCCCCCCCCC--hHHHHHHHHHHHhhcCCCccEEEEEEeCCC-CCCHh
Q 024985           58 --------------CEMQRTMLKDGQVVNVIDTPGLFDSSAD--SEFVSKEIVKCIGMAKDGIHAVLLVFSVRN-RFSEE  120 (259)
Q Consensus        58 --------------~~~~~~~~~~~~~~~liDTPG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~d~~~-~~~~~  120 (259)
                                    .....+.......+.+|||||+......  .......+......++..+|++|+|++..+ .... 
T Consensus       111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-  189 (360)
T 3t34_A          111 TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-  189 (360)
T ss_dssp             HHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-
T ss_pred             HHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-
Confidence                          0011111122447899999999865321  112333444555555667899999998752 2222 


Q ss_pred             HHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          121 GGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       121 ~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                       ..++..+.....  ...|+++|+||+|+...
T Consensus       190 -~~~~~l~~~~~~--~~~~~i~V~nK~Dl~~~  218 (360)
T 3t34_A          190 -SDAIKISREVDP--SGDRTFGVLTKIDLMDK  218 (360)
T ss_dssp             -CHHHHHHHHSCT--TCTTEEEEEECGGGCCT
T ss_pred             -HHHHHHHHHhcc--cCCCEEEEEeCCccCCC
Confidence             234444444221  23499999999999865

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.70  E-value=1.6e-15  Score=132.87  Aligned_cols=168  Identities=15%  Similarity=0.254  Sum_probs=100.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccc-cCCCCCcceeeEEEEEEee--------------C--------CcEEEE
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKS-KAGSSGVTKTCEMQRTMLK--------------D--------GQVVNV   73 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~-~~~~~~~T~~~~~~~~~~~--------------~--------~~~~~l   73 (259)
                      ....+|+++|.+++|||||+++|+|...... .....+.|....+......              .        ...+.|
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            4568999999999999999999997642111 1112344554433222110              1        157999


Q ss_pred             EeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           74 IDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF-SEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        74 iDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      |||||.           ..+...+......+|++|+|+|++++. ..+..+.+..+.. ++.   .|+++|+||+|+...
T Consensus        86 iDtPGh-----------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~~  150 (408)
T 1s0u_A           86 VDSPGH-----------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVDE  150 (408)
T ss_dssp             EECSSH-----------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSCT
T ss_pred             EECCCH-----------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCCH
Confidence            999993           234445555667889999999998665 6676666665543 332   389999999998765


Q ss_pred             CcccHHhhhCCCCCchHHHHHHHcC-CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          153 NDETLEDYLGPECPKPLKEILQLCE-NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .  ......     ..+++++.... ..+.++..++..+    .++.+|++.|.+.++.
T Consensus       151 ~--~~~~~~-----~~i~~~l~~~~~~~~~~i~vSA~~g----~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          151 K--QAEENY-----EQIKEFVKGTIAENAPIIPISAHHE----ANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             T--TTTTHH-----HHHHHHHTTSTTTTCCEEEC----------CHHHHHHHHHHHSCC
T ss_pred             H--HHHHHH-----HHHHHHHhhcCCCCCeEEEeeCCCC----CCHHHHHHHHHHhCCC
Confidence            2  111100     12233333211 1223444444433    7899999999886653

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.70  E-value=6.9e-19  Score=157.93  Aligned_cols=162  Identities=13%  Similarity=0.143  Sum_probs=110.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ..++|+++|.+|+|||||+|+|++......  ..++.|.....+.+.+..+..+.||||||.....           ...
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~-----------~~~   69 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS-----------AMR   69 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT-----------TSB
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH-----------HHH
Confidence            357899999999999999999998765332  3455666655554443356789999999965432           223


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH---HH
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI---LQ  174 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~---~~  174 (259)
                      ...+..+|++|+|+|++++..+++.+.+..+.. .+    .|+++|+||+|+..........        .+...   .+
T Consensus        70 ~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~-~~----vPiIVViNKiDl~~~~~~~v~~--------~l~~~~~~~e  136 (537)
T 3izy_P           70 ARGTQVTDIVILVVAADDGVMKQTVESIQHAKD-AH----VPIVLAINKCDKAEADPEKVKK--------ELLAYDVVCE  136 (537)
T ss_dssp             BSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHT-TT----CCEEECCBSGGGTTTSCCSSSS--------HHHHTTSCCC
T ss_pred             HHHHccCCEEEEEEECCCCccHHHHHHHHHHHH-cC----CcEEEEEecccccccchHHHHH--------HHHhhhhhHH
Confidence            345667899999999998888888877776654 33    3999999999987542111111        11111   11


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .++..+.++..++..+    .++.+|++.+..++.
T Consensus       137 ~~~~~~~iv~vSAktG----~GI~eLle~I~~l~~  167 (537)
T 3izy_P          137 DYGGDVQAVHVSALTG----ENMMALAEATIALAE  167 (537)
T ss_dssp             CSSSSEEECCCCSSSS----CSSHHHHHHHHHHHT
T ss_pred             hcCCCceEEEEECCCC----CCchhHHHHHHHhhh
Confidence            2233445666666554    789999999988764

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.69  E-value=1.2e-16  Score=139.93  Aligned_cols=168  Identities=15%  Similarity=0.151  Sum_probs=99.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcc--------------eeeEEE--EEE--eeCCcEEEEEeCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVT--------------KTCEMQ--RTM--LKDGQVVNVIDTPG   78 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T--------------~~~~~~--~~~--~~~~~~~~liDTPG   78 (259)
                      .+..+|+++|.+|+|||||+|+|++....... .....+              ......  ...  ......+.+|||||
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG   84 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL-GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG   84 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS-EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCccccccc-CccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence            45689999999999999999999985421100 000000              000000  000  01125799999999


Q ss_pred             CCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccH
Q 024985           79 LFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF-SEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETL  157 (259)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~  157 (259)
                      ..+           +...+...+..+|++|+|+|++.+. ..+..+.+..+.. ++.   +|+++|+||+|+.+.  ...
T Consensus        85 h~~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~-~~~---~~iivviNK~Dl~~~--~~~  147 (403)
T 3sjy_A           85 HEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IGV---KNLIIVQNKVDVVSK--EEA  147 (403)
T ss_dssp             CGG-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTC---CCEEEEEECGGGSCH--HHH
T ss_pred             cHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHH-cCC---CCEEEEEECccccch--HHH
Confidence            532           2223333445779999999999765 6666777776655 332   389999999998854  333


Q ss_pred             HhhhCCCCCchHHHHHHHcCC-cEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          158 EDYLGPECPKPLKEILQLCEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       158 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      .+...     .+++.+..+.. ...++..++..+    .++.+|++.|.+.++..
T Consensus       148 ~~~~~-----~i~~~l~~~~~~~~~ii~vSA~~g----~gi~~L~~~l~~~l~~~  193 (403)
T 3sjy_A          148 LSQYR-----QIKQFTKGTWAENVPIIPVSALHK----INIDSLIEGIEEYIKTP  193 (403)
T ss_dssp             HHHHH-----HHHHHHTTSTTTTCCEEECBTTTT----BSHHHHHHHHHHHSCCC
T ss_pred             HHHHH-----HHHHHHHhhCCCCCEEEEEECCCC----cChHHHHHHHHHhCCCC
Confidence            22221     23333332221 222344444333    78999999998876543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.69  E-value=2.8e-16  Score=138.72  Aligned_cols=153  Identities=10%  Similarity=0.107  Sum_probs=93.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccccc---------C---C-------------------CCCcceeeEEEEEEe
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK---------A---G-------------------SSGVTKTCEMQRTML   65 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~---------~---~-------------------~~~~T~~~~~~~~~~   65 (259)
                      ...++|+++|.+|+|||||+|+|++.......         .   .                   ..+.|....+..+. 
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~-  100 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS-  100 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE-
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee-
Confidence            34589999999999999999999865310000         0   0                   01334444433333 


Q ss_pred             eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEe
Q 024985           66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFT  145 (259)
Q Consensus        66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~n  145 (259)
                      ..+..+.||||||..+           +...+...+..+|++|+|+|++++...+..+.+..+.. .+.   +|+++|+|
T Consensus       101 ~~~~~~~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~~---~~iIvviN  165 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL-LGI---KHIVVAIN  165 (434)
T ss_dssp             CSSEEEEEEECCCSGG-----------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC---CEEEEEEE
T ss_pred             cCCceEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEE
Confidence            4567899999999643           12222234467899999999998888887777766654 332   37999999


Q ss_pred             CCCCCCCCcccHHhhhCCCCCchHHHHHHHcC--C-cEEEEeCCCccc
Q 024985          146 GGNELEDNDETLEDYLGPECPKPLKEILQLCE--N-RRVLFDNKTKDA  190 (259)
Q Consensus       146 k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-~~~~~~~~~~~~  190 (259)
                      |+|+...+.+.++...     ..++.+++.++  . .+.++..++..+
T Consensus       166 K~Dl~~~~~~~~~~i~-----~~~~~~~~~~g~~~~~~~~i~vSA~~g  208 (434)
T 1zun_B          166 KMDLNGFDERVFESIK-----ADYLKFAEGIAFKPTTMAFVPMSALKG  208 (434)
T ss_dssp             CTTTTTSCHHHHHHHH-----HHHHHHHHTTTCCCSEEEEEECCTTTC
T ss_pred             cCcCCcccHHHHHHHH-----HHHHHHHHHhCCCccCceEEEEeccCC
Confidence            9998753212222221     13555566655  2 234555554443

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.69  E-value=1.6e-16  Score=124.00  Aligned_cols=166  Identities=17%  Similarity=0.138  Sum_probs=86.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCcceeeEEEEEEe------eCCcEEEEEeCCCCCCCCCChHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRR-AFKSKAGSSGVTKTCEMQRTML------KDGQVVNVIDTPGLFDSSADSEFVSK   91 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~-~~~~~~~~~~~T~~~~~~~~~~------~~~~~~~liDTPG~~~~~~~~~~~~~   91 (259)
                      ..+|+++|++|||||||+|.+++.. .+...   ...|....+.....      .....+.+|||||..           
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~---~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------   67 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGM---QSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE-----------   67 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC--------------CSEEEEEEEC---------CEEEEEEECSHH-----------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCC---cceeccEEeEEeeeccccCCCCceEEEEEecCCCH-----------
Confidence            3689999999999999999999863 22111   11222222211110      134589999999942           


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHh--HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchH
Q 024985           92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEE--GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPL  169 (259)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l  169 (259)
                      .+.......+.+++++++|+|++++....  -..++..+....   ...|+++|+||+|+...  ........    ...
T Consensus        68 ~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~----~~~  138 (184)
T 2zej_A           68 EFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSDE--KQRKACMS----KIT  138 (184)
T ss_dssp             HHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCCH--HHHHHHHH----HHH
T ss_pred             HHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCcccc--hhhHHHHH----HHH
Confidence            11111122233568999999998442211  123344333321   13499999999998643  22111100    011


Q ss_pred             HHHHHHcCCc--EEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          170 KEILQLCENR--RVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       170 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..+.+..+..  ..++..++..+   ..++.+|++.|.+.+.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~Sa~~~---~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          139 KELLNKRGFPAIRDYHFVNATEE---SDALAKLRKTIINESLN  178 (184)
T ss_dssp             HHTTTCTTSCEEEEEEECCTTSC---CHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhcCCcchhheEEEecccC---chhHHHHHHHHHHHHhc
Confidence            1222222322  12444554433   14899999988777654

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.68  E-value=3.4e-16  Score=136.65  Aligned_cols=170  Identities=16%  Similarity=0.188  Sum_probs=107.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc------cc----cc----CCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA------FK----SK----AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~------~~----~~----~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~   83 (259)
                      +..+|+++|.+|+|||||+++|++...      +.    ..    ....+.|.......+. ..+..+.||||||..   
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~~~iiDtpG~~---   77 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-TAARHYAHTDCPGHA---   77 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-CSSCEEEEEECSSHH---
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec-cCCeEEEEEECCChH---
Confidence            457999999999999999999986411      00    00    0023445554443333 356799999999942   


Q ss_pred             CChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe-EEEEEeCCCCCCCCcccHHhhhC
Q 024985           84 ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY-MIVVFTGGNELEDNDETLEDYLG  162 (259)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~nk~D~~~~~~~~~~~~~~  162 (259)
                              .+...+...+..+|++|+|+|++++...+..+.+..+.. .+.    | +++|+||+|+..+  ....+.+ 
T Consensus        78 --------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~v----p~iivviNK~Dl~~~--~~~~~~~-  141 (397)
T 1d2e_A           78 --------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-IGV----EHVVVYVNKADAVQD--SEMVELV-  141 (397)
T ss_dssp             --------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CCEEEEEECGGGCSC--HHHHHHH-
T ss_pred             --------HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cCC----CeEEEEEECcccCCC--HHHHHHH-
Confidence                    344445556778999999999998888887777766654 343    6 7899999998753  2211111 


Q ss_pred             CCCCchHHHHHHHcCC---cEEEEeCCCccccc-----chhH-HHHHHHHHHHHHHH
Q 024985          163 PECPKPLKEILQLCEN---RRVLFDNKTKDAAT-----RTEQ-VGKLISLVNSVILE  210 (259)
Q Consensus       163 ~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~-i~eLl~~i~~~~~~  210 (259)
                         ...++++++.++.   .+.++..++..+.+     ...+ +.+|++.|.+.++.
T Consensus       142 ---~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          142 ---ELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             ---HHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             ---HHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence               1134556665552   12344444332211     1125 88999999887754

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.68  E-value=5.5e-16  Score=135.93  Aligned_cols=168  Identities=14%  Similarity=0.225  Sum_probs=103.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccc-cCCCCCcceeeEEEEEEee--------------C--------CcEEEE
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKS-KAGSSGVTKTCEMQRTMLK--------------D--------GQVVNV   73 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~-~~~~~~~T~~~~~~~~~~~--------------~--------~~~~~l   73 (259)
                      .+..+|+++|.+++|||||+++|+|...... .....+.|....+....+.              .        ...+.|
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            4568999999999999999999997642111 1112344554443322211              0        157999


Q ss_pred             EeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           74 IDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF-SEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        74 iDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      |||||..           .+...+......+|++|+|+|++++. ..+..+.+..+.. ++.   .|+++|+||+|+...
T Consensus        88 iDtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~~---~~iivviNK~Dl~~~  152 (410)
T 1kk1_A           88 IDAPGHE-----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IGQ---KNIIIAQNKIELVDK  152 (410)
T ss_dssp             EECSSHH-----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTC---CCEEEEEECGGGSCH
T ss_pred             EECCChH-----------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEECccCCCH
Confidence            9999932           33344444555779999999998665 6677777766654 332   389999999998864


Q ss_pred             CcccHHhhhCCCCCchHHHHHHHc-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          153 NDETLEDYLGPECPKPLKEILQLC-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                        ....+...     .++.++... ...+.++..++..+    .++.+|++.|.+.++.
T Consensus       153 --~~~~~~~~-----~i~~~l~~~~~~~~~~i~vSA~~g----~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          153 --EKALENYR-----QIKEFIEGTVAENAPIIPISALHG----ANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             --HHHHHHHH-----HHHHHHTTSTTTTCCEEECBTTTT----BSHHHHHHHHHHHSCC
T ss_pred             --HHHHHHHH-----HHHHHHHhcCcCCCeEEEeeCCCC----CCHHHHHHHHHHhCCC
Confidence              22211111     233333321 11223344444333    7899999999887654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.68  E-value=8.7e-17  Score=144.67  Aligned_cols=118  Identities=14%  Similarity=0.164  Sum_probs=81.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc----------------cc----CCCCCcceeeEEEEEEeeCCcEEEEEeCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFK----------------SK----AGSSGVTKTCEMQRTMLKDGQVVNVIDTP   77 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~----------------~~----~~~~~~T~~~~~~~~~~~~~~~~~liDTP   77 (259)
                      ..++|+++|.+|||||||+|+|++.....                ..    ....+.|.......+. ..+..+.|||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~i~liDTP   90 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFP-YKDYLINLLDTP   90 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEE-ETTEEEEEECCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEE-eCCEEEEEEECC
Confidence            46899999999999999999997211100                00    0002333333334344 467899999999


Q ss_pred             CCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           78 GLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      |+.+...       ..    ..++..+|++|+|+|++.+.+..+..++..+.. .+    .|+++|+||+|+...
T Consensus        91 G~~df~~-------~~----~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~-~~----iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           91 GHADFTE-------DT----YRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL-RH----TPIMTFINKMDRDTR  149 (528)
T ss_dssp             CSTTCCH-------HH----HHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT-TT----CCEEEEEECTTSCCS
T ss_pred             CchhHHH-------HH----HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEeCCCCccc
Confidence            9876421       22    234456799999999998888888887776654 33    399999999998654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.68  E-value=9.2e-17  Score=140.68  Aligned_cols=119  Identities=14%  Similarity=0.182  Sum_probs=81.5

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCC-------cccc----c----CCCCCcceeeEEEEEEeeCCcEEEEEeCCCCC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRR-------AFKS----K----AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF   80 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~-------~~~~----~----~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~   80 (259)
                      .....+|+++|.+|+|||||+|+|++..       .+..    .    ....+.|.......+. ..+..+.||||||..
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~~~iiDtpG~~   86 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-TAKRHYSHVDCPGHA   86 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE-CSSCEEEEEECCCSG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEec-cCCeEEEEEECCChH
Confidence            3456899999999999999999998731       0000    0    0012344444433333 456799999999975


Q ss_pred             CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe-EEEEEeCCCCCC
Q 024985           81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY-MIVVFTGGNELE  151 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~nk~D~~~  151 (259)
                      +           +...+...+..+|++|+|+|++++...+..+++..+.. .+.    | +++|+||+|+..
T Consensus        87 ~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~-~~i----p~iivviNK~Dl~~  142 (405)
T 2c78_A           87 D-----------YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV----PYIVVFMNKVDMVD  142 (405)
T ss_dssp             G-----------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH-TTC----CCEEEEEECGGGCC
T ss_pred             H-----------HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC----CEEEEEEECccccC
Confidence            3           22223334557799999999987888888777776655 343    6 889999999875

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.67  E-value=2.7e-16  Score=123.40  Aligned_cols=120  Identities=8%  Similarity=0.104  Sum_probs=70.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ...++|+++|.+|||||||+|+|++........... .|...     . ..+..+.+|||||........       ...
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~-~~~~~-----~-~~~~~~~l~Dt~G~~~~~~~~-------~~~  111 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAA-----D-YDGSGVTLVDFPGHVKLRYKL-------SDY  111 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------C-CCCTTCSEEEETTCCBSSCCH-------HHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCC-Cceee-----e-ecCCeEEEEECCCCchHHHHH-------HHH
Confidence            456899999999999999999999876422111111 11111     1 245678999999987543321       112


Q ss_pred             HhhcCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcc-----cccCeEEEEEeCCCCCCC
Q 024985           97 IGMAKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGK-----KVFDYMIVVFTGGNELED  152 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~-----~~~~~~ivV~nk~D~~~~  152 (259)
                      +......+|++|+|+|++ +.-+.  .....++...+..     ....|+++|+||+|+...
T Consensus       112 ~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  171 (193)
T 2ged_A          112 LKTRAKFVKGLIFMVDSTVDPKKL--TTTAEFLVDILSITESSCENGIDILIACNKSELFTA  171 (193)
T ss_dssp             HHHHGGGEEEEEEEEETTCCHHHH--HHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             HHhhcccCCEEEEEEECCCCchhH--HHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence            222224569999999997 22111  1222233322211     123599999999999865

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.66  E-value=3.8e-16  Score=134.86  Aligned_cols=153  Identities=16%  Similarity=0.225  Sum_probs=98.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      +|+++|.+++|||||+|+|+          ..+.|.......+. ..+..+.||||||..+.       ...+..    .
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~-~~~~~i~iiDtPGh~~f-------~~~~~~----~   80 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNND-KEGRNMVFVDAHSYPKT-------LKSLIT----A   80 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEEC-SSSSEEEEEECTTTTTC-------HHHHHH----H
T ss_pred             EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEe-cCCeEEEEEECCChHHH-------HHHHHH----H
Confidence            89999999999999999998          12344445554444 45678999999997643       222222    2


Q ss_pred             CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeE-EEEEe-CCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985          101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYM-IVVFT-GGNELEDNDETLEDYLGPECPKPLKEILQLCEN  178 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~-ivV~n-k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (259)
                      +..+|++|+|+| +.+...+..+.+..+.. ++.    |. ++|+| |+|+ ..  ..++...     ..++.++...+.
T Consensus        81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~-~~i----~~~ivvvNNK~Dl-~~--~~~~~~~-----~~i~~~l~~~~~  146 (370)
T 2elf_A           81 LNISDIAVLCIP-PQGLDAHTGECIIALDL-LGF----KHGIIALTRSDST-HM--HAIDELK-----AKLKVITSGTVL  146 (370)
T ss_dssp             HHTCSEEEEEEC-TTCCCHHHHHHHHHHHH-TTC----CEEEEEECCGGGS-CH--HHHHHHH-----HHHHHHTTTSTT
T ss_pred             HHHCCEEEEEEc-CCCCcHHHHHHHHHHHH-cCC----CeEEEEEEeccCC-CH--HHHHHHH-----HHHHHHHHhcCC
Confidence            346799999999 76777777777776655 443    55 88999 9998 43  2222111     123333333321


Q ss_pred             -cEEEEe--CCCcccccchhHHHHHHHHHHHHHHH
Q 024985          179 -RRVLFD--NKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       179 -~~~~~~--~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                       .+.++.  .++... ....|+.+|++.|.+.++.
T Consensus       147 ~~~~ii~~~~SA~~~-~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          147 QDWECISLNTNKSAK-NPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             TTCEEEECCCCTTSS-STTTTHHHHHHHHHHHHHH
T ss_pred             CceEEEecccccccC-cCCCCHHHHHHHHHhhccc
Confidence             223444  454430 0137999999998887764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.66  E-value=3.7e-17  Score=130.95  Aligned_cols=122  Identities=8%  Similarity=0.143  Sum_probs=73.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ....++|+++|++|+|||||+|+|++......... ...|....      .....+.+|||||.....       ..+..
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~-~~~~~~~~------~~~~~~~l~Dt~G~~~~~-------~~~~~   74 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSAAD------YDGSGVTLVDFPGHVKLR-------YKLSD   74 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCC-SSCEEETT------GGGSSCEEEECCCCGGGT-------HHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeee-cCceEEEE------eeCceEEEEECCCcHHHH-------HHHHH
Confidence            45668999999999999999999998764221111 11111111      244578999999975431       12222


Q ss_pred             HHhhcCCCccEEEEEEeCC-CC--CCHhHHHHHHHHHHHhc--ccccCeEEEEEeCCCCCCC
Q 024985           96 CIGMAKDGIHAVLLVFSVR-NR--FSEEGGAAIHSLESLFG--KKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~-~~--~~~~~~~~l~~l~~~~~--~~~~~~~ivV~nk~D~~~~  152 (259)
                      ++......+|++|+|+|++ +.  +..... ++..+.....  .....|+++|+||+|+...
T Consensus        75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  135 (218)
T 1nrj_B           75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTA  135 (218)
T ss_dssp             HHHHHGGGEEEEEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             HHHhccccCCEEEEEEECCCChHHHHHHHH-HHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence            2222223469999999998 32  332222 3332222111  1123599999999999865

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.66  E-value=4.4e-16  Score=142.48  Aligned_cols=153  Identities=14%  Similarity=0.140  Sum_probs=96.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccC-----------------------------CCCCcceeeEEEEEEeeC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKA-----------------------------GSSGVTKTCEMQRTMLKD   67 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~-----------------------------~~~~~T~~~~~~~~~~~~   67 (259)
                      ...++|+++|.+|+|||||+|+|++........                             ...+.|.......+. ..
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~-~~  243 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-TH  243 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEE-CS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEe-cC
Confidence            456899999999999999999999764211100                             013556655555444 46


Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHhHHHHHHHHHHHhcccccCeE
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-------FSEEGGAAIHSLESLFGKKVFDYM  140 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~  140 (259)
                      +..+.||||||+.+           +...+...+..+|++|+|+|++.+       ...+..+.+..+.. ++.   .++
T Consensus       244 ~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi---~~i  308 (611)
T 3izq_1          244 RANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNL  308 (611)
T ss_dssp             SCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC---CEE
T ss_pred             CceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC---CeE
Confidence            77999999999742           445556677889999999999843       33455555554443 332   369


Q ss_pred             EEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC---cEEEEeCCCccc
Q 024985          141 IVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN---RRVLFDNKTKDA  190 (259)
Q Consensus       141 ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~  190 (259)
                      +||+||+|+........++...     .+..++..++.   ...++..++..+
T Consensus       309 IVVvNKiDl~~~~~~~~~ei~~-----~l~~~l~~~g~~~~~~~~i~vSA~tG  356 (611)
T 3izq_1          309 IIAMNKMDNVDWSQQRFEEIKS-----KLLPYLVDIGFFEDNINWVPISGFSG  356 (611)
T ss_dssp             EEEEECTTTTTTCHHHHHHHHH-----HHHHHHHHHTCCGGGCEEEECCTTTC
T ss_pred             EEEEecccccchhHHHHHHHHH-----HHHHHHHhhcccccCccEEeeecccC
Confidence            9999999988642222222221     34555555554   234455554443

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.65  E-value=7.1e-16  Score=121.31  Aligned_cols=163  Identities=17%  Similarity=0.143  Sum_probs=89.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc-ccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA-FKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ...+|+++|.+|||||||+|++++... +.....+.+.+...  ..+. .++.  .+.+|||+|......       .+ 
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~l~~~Dt~~~~~~~~-------~~-   73 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYE--RTLM-VDGESATIILLDMWENKGENE-------WL-   73 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEE--EEEE-ETTEEEEEEEECCCCC----C-------TT-
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEE--EEEE-ECCeEEEEEEEEeccCcchhh-------hH-
Confidence            458999999999999999999986432 22211112222211  1222 3444  567899999542100       01 


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                        ...++..+|++++|+|++++-+... ..++..+..... ....|+++|.||+|+.....-..         ...+.+.
T Consensus        74 --~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~r~v~~---------~~~~~~a  141 (192)
T 2cjw_A           74 --HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRXREVSV---------SEGRAXA  141 (192)
T ss_dssp             --GGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGGGCCSCH---------HHHHHHH
T ss_pred             --HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhccccccH---------HHHHHHH
Confidence              1112334699999999985433332 234444444321 12349999999999764210011         1112222


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ...+..  ++..++..+    .++.+++..+...+.
T Consensus       142 ~~~~~~--~~e~SA~~g----~~v~~lf~~l~~~~~  171 (192)
T 2cjw_A          142 VVFDXK--FIETSAAVQ----HNVKELFEGIVRQVR  171 (192)
T ss_dssp             HHTTCE--EEECBTTTT----BSHHHHHHHHHHHHH
T ss_pred             HHhCCc--eEEeccccC----CCHHHHHHHHHHHHH
Confidence            333333  444554443    789999998877654

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.65  E-value=1.1e-15  Score=129.82  Aligned_cols=168  Identities=15%  Similarity=0.036  Sum_probs=100.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|.+|+|||||+|++++......   ..+++.......+ ..++.  .+.+|||||....           ..
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~---~~~t~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~-----------~~  218 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGE---YIPTVFDNYSANV-MVDGKPVNLGLWDTAGLEDY-----------DR  218 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCS---CCCCSEEEEEEEE-EETTEEEEEEEEEECCCGGG-----------TT
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcc---cCCcccceeEEEE-EECCEEEEEEEEeCCCchhh-----------hH
Confidence            458999999999999999999997654221   1222222222222 24454  4559999996532           12


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh----CCCCCchH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL----GPECPKPL  169 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~----~~~~~~~l  169 (259)
                      .....+..+|++++|+|++++.+..+.  .++..+.....   ..|+++|+||+|+.... ...+.+.    ........
T Consensus       219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~  294 (332)
T 2wkq_A          219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQG  294 (332)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTCH-HHHHHHHHTTCCCCCHHHH
T ss_pred             HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhccccc-chhhhccccccccccHHHH
Confidence            233456788999999999855443332  34555555322   35999999999986541 1111111    10112233


Q ss_pred             HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ..+....+.. .+|..++..+    .++.+|++.|.+.+.
T Consensus       295 ~~~~~~~~~~-~~~~~Sa~~~----~gi~~l~~~l~~~~~  329 (332)
T 2wkq_A          295 LAMAKEIGAV-KYLECSALTQ----RGLKTVFDEAIRAVL  329 (332)
T ss_dssp             HHHHHHTTCS-EEEECCTTTC----TTHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCc-EEEEecCCCC----cCHHHHHHHHHHHHh
Confidence            4455554431 2444444443    789999999877654

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.65  E-value=6e-16  Score=133.11  Aligned_cols=123  Identities=16%  Similarity=0.187  Sum_probs=85.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ...+|+|+|.||||||||+|+|++.....  ...+++|.++....+. ..+.++.++||||+.............+...+
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v--~~~pftT~~~~~g~~~-~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i  147 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEA--AEYEFTTLVTVPGVIR-YKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA  147 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCG--GGTCSSCCCEEEEEEE-ETTEEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCceeeeeeEEEE-eCCcEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence            34689999999999999999999987533  3456777777766655 68899999999999866444444555665555


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHH-HHHHHhccc-ccCeEEEEEeCCCCC
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIH-SLESLFGKK-VFDYMIVVFTGGNEL  150 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~-~l~~~~~~~-~~~~~ivV~nk~D~~  150 (259)
                      ..    +|++++|+|+.+++.  +...+. .|.. ++.. ..+|.++++||+|..
T Consensus       148 ~~----ad~il~vvD~~~p~~--~~~~i~~EL~~-~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          148 RT----CNLLFIILDVNKPLH--HKQIIEKELEG-VGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             HH----CSEEEEEEETTSHHH--HHHHHHHHHHH-TTEEETCCCCCEEEEECSSS
T ss_pred             Hh----cCccccccccCccHH--HHHHHHHHHHH-hhHhhccCChhhhhhHhhhh
Confidence            54    499999999974432  223333 3333 3332 335889999999974

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.46  E-value=1.1e-17  Score=132.79  Aligned_cols=119  Identities=17%  Similarity=0.023  Sum_probs=73.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ....+|+++|.+|||||||+|++++.......   .+++.......+.. .....+.+|||||....           ..
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~   93 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-----------DR   93 (204)
Confidence            35689999999999999999999976642211   11111111111111 12235679999996432           22


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      .....+..+|++|+|+|++++.+..+  ..++..+.....   ..|+++|+||+|+...
T Consensus        94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~  149 (204)
T 3th5_A           94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD  149 (204)
Confidence            22334567799999999985543333  245555544322   3499999999998754

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.64  E-value=1.4e-17  Score=148.30  Aligned_cols=161  Identities=12%  Similarity=0.171  Sum_probs=103.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ..++|+++|++++|||||+++|++.....  ....+.|.....+.+. .++..+.||||||..+...           ..
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~--~e~~GIT~~i~~~~v~-~~~~~i~~iDTPGhe~f~~-----------~~   68 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVAS--GEAGGITQHIGAYHVE-TENGMITFLDTPGHAAFTS-----------MR   68 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSB--TTBCCCCCCSSCCCCC-TTSSCCCEECCCTTTCCTT-----------SB
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCcc--ccCCCeeEeEEEEEEE-ECCEEEEEEECCCcHHHHH-----------HH
Confidence            45789999999999999999998755322  1224455554444443 4567899999999765422           12


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      ......+|++|+|+|++++..++..+.+..+.. .+    .|+++|+||+|+...+...+...+... .    .+.+.++
T Consensus        69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~-~~----vPiIVviNKiDl~~~~~~~v~~~l~~~-~----~~~~~~~  138 (501)
T 1zo1_I           69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKA-AQ----VPVVVAVNKIDKPEADPDRVKNELSQY-G----ILPEEWG  138 (501)
T ss_dssp             CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH-TT----CCEEEEEECSSSSTTCCCCTTCCCCCC-C----CCTTCCS
T ss_pred             HHHHhhCCEEEEEeecccCccHHHHHHHHHHHh-cC----ceEEEEEEeccccccCHHHHHHHHHHh-h----hhHHHhC
Confidence            344567899999999987777777777766554 33    399999999998754222222222110 0    0111223


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      ..+.++..++..+    .++.+|++.|..
T Consensus       139 ~~~~~v~vSAktG----~gI~eLle~I~~  163 (501)
T 1zo1_I          139 GESQFVHVSAKAG----TGIDELLDAILL  163 (501)
T ss_dssp             SSCEEEECCTTTC----TTCTTHHHHTTT
T ss_pred             CCccEEEEeeeec----cCcchhhhhhhh
Confidence            2344566665554    789999988753

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.64  E-value=7.6e-16  Score=132.71  Aligned_cols=174  Identities=17%  Similarity=0.221  Sum_probs=83.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC-----CCcceeeEEEEEEe-eCCc--EEEEEeCCCCCCCCCCh----
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS-----SGVTKTCEMQRTML-KDGQ--VVNVIDTPGLFDSSADS----   86 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~-----~~~T~~~~~~~~~~-~~~~--~~~liDTPG~~~~~~~~----   86 (259)
                      .++|+|+|++|+|||||+|+|++...+..+..+     ...|.......... ..+.  .+.+|||||+.+.....    
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~  116 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK  116 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence            478999999999999999999987665433211     11233222222211 2233  68999999996543211    


Q ss_pred             ---HHHHHHHHHHHhhc---------CCCccEEEEEEeC-CCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC
Q 024985           87 ---EFVSKEIVKCIGMA---------KDGIHAVLLVFSV-RNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDN  153 (259)
Q Consensus        87 ---~~~~~~~~~~~~~~---------~~~~~~il~v~d~-~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~  153 (259)
                         ..+...+..++...         ...+|+++|+++. ...+...+..+++.+    ..  ..|+++|+||+|+... 
T Consensus       117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~--~~piIlV~NK~Dl~~~-  189 (361)
T 2qag_A          117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HN--KVNIVPVIAKADTLTL-  189 (361)
T ss_dssp             CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS---SCEEEEEECCSSSCH-
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----cc--CCCEEEEEECCCCCCH-
Confidence               11222222333211         2345788898886 457777776555544    22  2499999999998865 


Q ss_pred             cccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          154 DETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                       ..+..+..     .+...+..++..++.+++....  . ...+.++...|.+.+
T Consensus       190 -~ev~~~k~-----~i~~~~~~~~i~~~~~Sa~~~~--~-~e~~~~l~~~i~~~i  235 (361)
T 2qag_A          190 -KERERLKK-----RILDEIEEHNIKIYHLPDAESD--E-DEDFKEQTRLLKASI  235 (361)
T ss_dssp             -HHHHHHHH-----HHHHHTTCC-CCSCCCC------------CHHHHHHHHHTC
T ss_pred             -HHHHHHHH-----HHHHHHHHCCCCEEeCCCcCCC--c-chhHHHHHHHHHhcC
Confidence             33332211     2334444444444444433221  1 244556666665544

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.64  E-value=1.1e-15  Score=139.25  Aligned_cols=116  Identities=15%  Similarity=0.198  Sum_probs=79.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-----------------eCCcEEEEEeCCCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-----------------KDGQVVNVIDTPGLF   80 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-----------------~~~~~~~liDTPG~~   80 (259)
                      ..++|+++|.+|+|||||+|+|++.....  ..+.+.|.........+                 .....+.||||||..
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~--~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe   81 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE   81 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCcc--ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence            35799999999999999999999765421  11223343322222111                 011259999999986


Q ss_pred             CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC
Q 024985           81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE  151 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~  151 (259)
                      +...           .....+..+|++|+|+|+++++..+....+..+.. .+    .|+++|+||+|+..
T Consensus        82 ~F~~-----------~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~-~~----vPiIVViNKiDl~~  136 (594)
T 1g7s_A           82 AFTT-----------LRKRGGALADLAILIVDINEGFKPQTQEALNILRM-YR----TPFVVAANKIDRIH  136 (594)
T ss_dssp             CCTT-----------SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGST
T ss_pred             HHHH-----------HHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHH-cC----CeEEEEeccccccc
Confidence            5432           12234567899999999998888888888877665 33    39999999999874

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.64  E-value=2.4e-16  Score=142.63  Aligned_cols=135  Identities=19%  Similarity=0.302  Sum_probs=81.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEE-------------------------------
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTM-------------------------------   64 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~-------------------------------   64 (259)
                      ....++|+|+|.+|+|||||+|+|+|........+..+.|.........                               
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            3467899999999999999999999988632112223333221110000                               


Q ss_pred             -----eeCC---cEEEEEeCCCCCCCCCChHHHHHH--HHHHHhhcCCCccEEEEEEeCCC-CCCHhHHHHHHHHHHHhc
Q 024985           65 -----LKDG---QVVNVIDTPGLFDSSADSEFVSKE--IVKCIGMAKDGIHAVLLVFSVRN-RFSEEGGAAIHSLESLFG  133 (259)
Q Consensus        65 -----~~~~---~~~~liDTPG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~  133 (259)
                           ...+   ..+.||||||+.+.....  +...  +..........+|++|+|+|++. .+...+..+++.+... +
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~--~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-~  218 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQR--VSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH-E  218 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC-G
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchhH--HHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc-C
Confidence                 0000   368999999987532111  1000  12222223345699999999985 4667777776666431 2


Q ss_pred             ccccCeEEEEEeCCCCCCCCcccHHh
Q 024985          134 KKVFDYMIVVFTGGNELEDNDETLED  159 (259)
Q Consensus       134 ~~~~~~~ivV~nk~D~~~~~~~~~~~  159 (259)
                          .|+++|+||+|+...  ..+..
T Consensus       219 ----~pvilVlNK~Dl~~~--~el~~  238 (550)
T 2qpt_A          219 ----DKIRVVLNKADMVET--QQLMR  238 (550)
T ss_dssp             ----GGEEEEEECGGGSCH--HHHHH
T ss_pred             ----CCEEEEEECCCccCH--HHHHH
Confidence                389999999999865  44443

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.62  E-value=2.3e-15  Score=118.90  Aligned_cols=162  Identities=14%  Similarity=0.112  Sum_probs=95.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+++|++|||||||+|.|++.......  .+..+.......+. .++.  .+.+|||||.......          
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~-~~g~~~~~~i~Dt~g~~~~~~~----------   70 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQ-VDGKTIKAQIWDTAGQERYRRI----------   70 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEE-ETTEEEEEEEEECSSGGGTTCC----------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEE-ECCEEEEEEEEECCCchhhhhh----------
Confidence            3579999999999999999999987642211  11122222222233 3453  6778999995432110          


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                       .......++++++|+|++...+... ..++..+....  ....|+++|+||+|+.......         ....+.+..
T Consensus        71 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~~~~~~---------~~~a~~l~~  138 (199)
T 2f9l_A           71 -TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRHLRAVP---------TDEARAFAE  138 (199)
T ss_dssp             -CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSC---------HHHHHHHHH
T ss_pred             -hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECcccccccCcC---------HHHHHHHHH
Confidence             1112345699999999984433322 23344343321  1235999999999986421011         112445555


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..+  +.+++.++.++    .++.++++.+.+.+.+
T Consensus       139 ~~~--~~~~d~Sal~~----~~i~~l~~~l~~~~~~  168 (199)
T 2f9l_A          139 KNN--LSFIETSALDS----TNVEEAFKNILTEIYR  168 (199)
T ss_dssp             HTT--CEEEECCTTTC----TTHHHHHHHHHHHHHH
T ss_pred             HcC--CeEEEEeCCCC----CCHHHHHHHHHHHHHH
Confidence            544  34555665554    7899999888776644

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.61  E-value=2.1e-15  Score=137.31  Aligned_cols=161  Identities=19%  Similarity=0.167  Sum_probs=93.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccccc-------------CCCCCcceeeEEEEEEee--C--CcEEEEEeCCCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSK-------------AGSSGVTKTCEMQRTMLK--D--GQVVNVIDTPGLF   80 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~T~~~~~~~~~~~--~--~~~~~liDTPG~~   80 (259)
                      ..++|+++|.+|+|||||+++|+........             ....+.|.......+.+.  +  +..+.||||||..
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            4579999999999999999999753210000             001234444333333332  2  2578999999975


Q ss_pred             CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhh
Q 024985           81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDY  160 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~  160 (259)
                      +.       ...+...+.    .+|++|+|+|++++.+.++...+..... .+    .|+++|+||+|+....   .++ 
T Consensus        83 dF-------~~ev~~~l~----~aD~aILVVDa~~gv~~qt~~~~~~~~~-~~----ipiIvViNKiDl~~a~---~~~-  142 (599)
T 3cb4_D           83 DF-------SYEVSRSLA----ACEGALLVVDAGQGVEAQTLANCYTAME-MD----LEVVPVLNKIDLPAAD---PER-  142 (599)
T ss_dssp             GG-------HHHHHHHHH----HCSEEEEEEETTTCCCTHHHHHHHHHHH-TT----CEEEEEEECTTSTTCC---HHH-
T ss_pred             HH-------HHHHHHHHH----HCCEEEEEEECCCCCCHHHHHHHHHHHH-CC----CCEEEeeeccCccccc---HHH-
Confidence            42       223333333    4599999999998888777666655443 23    3999999999987541   111 


Q ss_pred             hCCCCCchHHHHHHHcCC---cEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          161 LGPECPKPLKEILQLCEN---RRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       161 ~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                             ...++.+.++.   .++..++.  .    ..|+.+|++.|.+.++..
T Consensus       143 -------v~~ei~~~lg~~~~~vi~vSAk--t----g~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          143 -------VAEEIEDIVGIDATDAVRCSAK--T----GVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             -------HHHHHHHHTCCCCTTCEEECTT--T----CTTHHHHHHHHHHHSCCC
T ss_pred             -------HHHHHHHHhCCCcceEEEeecc--c----CCCchhHHHHHhhcCCCc
Confidence                   12233333332   23333333  2    278999999998887654

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.60  E-value=1.1e-14  Score=139.10  Aligned_cols=170  Identities=16%  Similarity=0.192  Sum_probs=104.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCc------cc--------ccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRA------FK--------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS   82 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~------~~--------~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~   82 (259)
                      .+..+|+++|.+++|||||+++|++...      +.        ......+.|.......+. ..+..+.||||||..  
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~-~~~~kI~IIDTPGHe--  370 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD-TPTRHYAHVDCPGHA--  370 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEE-CSSCEEEEEECCCHH--
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEc-CCCEEEEEEECCChH--
Confidence            4568999999999999999999986410      00        000123444443333333 356799999999942  


Q ss_pred             CCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe-EEEEEeCCCCCCCCcccHHhhh
Q 024985           83 SADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY-MIVVFTGGNELEDNDETLEDYL  161 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivV~nk~D~~~~~~~~~~~~~  161 (259)
                               .+...+...+..+|++|+|+|++++...++.+.+..+.. .+.    | ++||+||+|+..+  ....+.+
T Consensus       371 ---------dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~-lgI----P~IIVVINKiDLv~d--~e~le~i  434 (1289)
T 3avx_A          371 ---------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ-VGV----PYIIVFLNKCDMVDD--EELLELV  434 (1289)
T ss_dssp             ---------HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH-HTC----SCEEEEEECCTTCCC--HHHHHHH
T ss_pred             ---------HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH-cCC----CeEEEEEeecccccc--hhhHHHH
Confidence                     344555567788999999999997877787777766654 343    6 7899999998753  2221111


Q ss_pred             CCCCCchHHHHHHHcCC---cEEEEeCCCcccc----cchhHHHHHHHHHHHHHH
Q 024985          162 GPECPKPLKEILQLCEN---RRVLFDNKTKDAA----TRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       162 ~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~----~~~~~i~eLl~~i~~~~~  209 (259)
                          ...++.++...+.   .+.++..++..+.    ....++.+|++.|...++
T Consensus       435 ----~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          435 ----EMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             ----HHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             ----HHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence                1134555655542   2233444433220    112578888888877654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.60  E-value=2.9e-15  Score=136.16  Aligned_cols=164  Identities=18%  Similarity=0.226  Sum_probs=95.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccccc-------------CCCCCcceeeEEEEEEee--CC--cEEEEEeCCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK-------------AGSSGVTKTCEMQRTMLK--DG--QVVNVIDTPGL   79 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~T~~~~~~~~~~~--~~--~~~~liDTPG~   79 (259)
                      ...++|+++|.+|+|||||+++|+........             ....+.|.......+.+.  ++  ..+.||||||.
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            34679999999999999999999753210000             001233433322223222  22  47889999997


Q ss_pred             CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHh
Q 024985           80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLED  159 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~  159 (259)
                      .+.       ...+...+    ..+|++|+|+|++++.+.++...+..... .+    .|+++|+||+|+....   .+.
T Consensus        84 ~dF-------~~ev~r~l----~~aD~aILVVDa~~gv~~qt~~~~~~a~~-~~----ipiIvviNKiDl~~a~---~~~  144 (600)
T 2ywe_A           84 VDF-------SYEVSRAL----AACEGALLLIDASQGIEAQTVANFWKAVE-QD----LVIIPVINKIDLPSAD---VDR  144 (600)
T ss_dssp             GGG-------HHHHHHHH----HTCSEEEEEEETTTBCCHHHHHHHHHHHH-TT----CEEEEEEECTTSTTCC---HHH
T ss_pred             HhH-------HHHHHHHH----HhCCEEEEEEECCCCccHHHHHHHHHHHH-CC----CCEEEEEeccCccccC---HHH
Confidence            642       22333333    45699999999998888887666655543 23    3999999999987541   111


Q ss_pred             hhCCCCCchHHHHHHHcCCcE-EEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          160 YLGPECPKPLKEILQLCENRR-VLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       160 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                              ...++.+.++... .++..++..    ..|+.+|++.|.+.++..
T Consensus       145 --------v~~el~~~lg~~~~~vi~vSAkt----g~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          145 --------VKKQIEEVLGLDPEEAILASAKE----GIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             --------HHHHHHHTSCCCGGGCEECBTTT----TBSHHHHHHHHHHHSCCC
T ss_pred             --------HHHHHHHhhCCCcccEEEEEeec----CCCchHHHHHHHHhcccc
Confidence                    1223333333210 022233322    278999999998887654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.60  E-value=3e-15  Score=132.13  Aligned_cols=119  Identities=24%  Similarity=0.303  Sum_probs=75.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCC-cccc----------------------------cCCCCCcceeeEEEEEEeeC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRR-AFKS----------------------------KAGSSGVTKTCEMQRTMLKD   67 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~-~~~~----------------------------~~~~~~~T~~~~~~~~~~~~   67 (259)
                      .+.++|+++|.+|+|||||+|+|++.. .+..                            .....+.|.......+. ..
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~-~~   82 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE-TK   82 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE-CS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe-cC
Confidence            456899999999999999999998541 1100                            00023455555544444 45


Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHhHHHHHHHHHHHhcccccCeE
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-------FSEEGGAAIHSLESLFGKKVFDYM  140 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~  140 (259)
                      +..+.||||||..+           +...+...+..+|++|+|+|++++       ...+..+.+..+.. ++.   .++
T Consensus        83 ~~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~---~~i  147 (435)
T 1jny_A           83 KYFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQL  147 (435)
T ss_dssp             SCEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTC
T ss_pred             CeEEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeE
Confidence            67899999999653           233344567789999999999865       33344454544443 332   368


Q ss_pred             EEEEeCCCCCC
Q 024985          141 IVVFTGGNELE  151 (259)
Q Consensus       141 ivV~nk~D~~~  151 (259)
                      ++|+||+|+.+
T Consensus       148 ivviNK~Dl~~  158 (435)
T 1jny_A          148 IVAVNKMDLTE  158 (435)
T ss_dssp             EEEEECGGGSS
T ss_pred             EEEEEcccCCC
Confidence            99999999876

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.59  E-value=7.7e-16  Score=136.71  Aligned_cols=119  Identities=17%  Similarity=0.218  Sum_probs=78.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCC-cccc-------------cC---------------CCCCcceeeEEEEEEeeC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRR-AFKS-------------KA---------------GSSGVTKTCEMQRTMLKD   67 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~-~~~~-------------~~---------------~~~~~T~~~~~~~~~~~~   67 (259)
                      ...++|+++|.+|+|||||+|+|++.. .+..             +.               ...+.|.......+. ..
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~-~~   83 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TP   83 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE-CS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe-cC
Confidence            356899999999999999999998641 0000             00               013455555544444 45


Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCH-------hHHHHHHHHHHHhcccccCeE
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSE-------EGGAAIHSLESLFGKKVFDYM  140 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~-------~~~~~l~~l~~~~~~~~~~~~  140 (259)
                      +..+.||||||..           .+...+...+..+|++|+|+|++++..+       ++.+.+..+.. .+.   .++
T Consensus        84 ~~~~~iiDtPGh~-----------~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v---~~i  148 (458)
T 1f60_A           84 KYQVTVIDAPGHR-----------DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGV---RQL  148 (458)
T ss_dssp             SEEEEEEECCCCT-----------THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTC---CEE
T ss_pred             CceEEEEECCCcH-----------HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCC---CeE
Confidence            6789999999954           2334445567789999999999854322       44444443333 332   259


Q ss_pred             EEEEeCCCCCC
Q 024985          141 IVVFTGGNELE  151 (259)
Q Consensus       141 ivV~nk~D~~~  151 (259)
                      ++|+||+|+..
T Consensus       149 ivviNK~Dl~~  159 (458)
T 1f60_A          149 IVAVNKMDSVK  159 (458)
T ss_dssp             EEEEECGGGGT
T ss_pred             EEEEEcccccc
Confidence            99999999874

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.59  E-value=1.4e-14  Score=113.78  Aligned_cols=159  Identities=15%  Similarity=0.119  Sum_probs=93.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+|+|++|||||||+|.|++.......  .+..+.......+. .++.  .+.+|||||......-          
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~-~~g~~~~~~i~Dt~g~~~~~~~----------   94 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQ-VDGKTIKAQIWDTAGLERYRAI----------   94 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEEE-ETTEEEEEEEEEECSCCSSSCC----------
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEEEE-ECCEEEEEEEEECCCCcchhhh----------
Confidence            3579999999999999999999987653221  12222222223333 4554  4567999997643221          


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                       .......++++++|+|.....+... ..++..+....  ....|+++|+||+|+.......         ....+.+..
T Consensus        95 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~~~~~~---------~~~a~~l~~  162 (191)
T 1oix_A           95 -TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRHLRAVP---------TDEARAFAE  162 (191)
T ss_dssp             -CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSC---------HHHHHHHHH
T ss_pred             -hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccC---------HHHHHHHHH
Confidence             1112345689999999874332222 12333333321  1235899999999976421011         113445555


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      ..+  +.+++.++.++    .++.++++.+.+.
T Consensus       163 ~~~--~~~ld~Sald~----~~v~~l~~~l~~~  189 (191)
T 1oix_A          163 KNG--LSFIETSALDS----TNVEAAFQTILTE  189 (191)
T ss_dssp             HTT--CEEEECCTTTC----TTHHHHHHHHHHH
T ss_pred             HcC--CEEEEEeCCCC----CCHHHHHHHHHHH
Confidence            544  34556665554    7899998887654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.57  E-value=2.1e-14  Score=130.07  Aligned_cols=164  Identities=16%  Similarity=0.120  Sum_probs=92.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE----EEEe---eCCcEEEEEeCCCCCCCCCChHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ----RTML---KDGQVVNVIDTPGLFDSSADSEFV   89 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~----~~~~---~~~~~~~liDTPG~~~~~~~~~~~   89 (259)
                      ....+|+|+|.+|||||||+|++++.........+.+.+......    .+..   ..+..+.+|||||.........  
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~--  116 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ--  116 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH--
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH--
Confidence            456899999999999999999999877422111111111111100    0111   1246899999999654322111  


Q ss_pred             HHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchH
Q 024985           90 SKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPL  169 (259)
Q Consensus        90 ~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l  169 (259)
                        .       ....+|++|+|+|+++ . .....++..+.....   ..|+++|+||+|+........         ..+
T Consensus       117 --~-------~l~~~d~ii~V~D~s~-~-~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~v~~---------~~~  173 (535)
T 3dpu_A          117 --F-------FMTRSSVYMLLLDSRT-D-SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYNIEQ---------KKI  173 (535)
T ss_dssp             --H-------HHHSSEEEEEEECGGG-G-GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCCCCH---------HHH
T ss_pred             --H-------HccCCcEEEEEEeCCC-c-hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccccCH---------HHH
Confidence              1       1224699999999973 3 333556666666432   359999999999875421111         123


Q ss_pred             HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      +......+..+  |..++..+    .|+.+|+..+.+.+.+.
T Consensus       174 ~~~~~~~~~~~--~~vSA~~g----~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          174 NERFPAIENRF--HRISCKNG----DGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             HHHCGGGTTCE--EECCC---------CTTHHHHHHHHHTCT
T ss_pred             HHHHHhcCCce--EEEecCcc----cCHHHHHHHHHHHHhcc
Confidence            34444444443  44444333    78999999999888654

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.57  E-value=1.5e-14  Score=125.85  Aligned_cols=91  Identities=15%  Similarity=0.097  Sum_probs=46.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe--------------------eC---CcEEEEEeC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML--------------------KD---GQVVNVIDT   76 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~--------------------~~---~~~~~liDT   76 (259)
                      .+|+++|.+|||||||+|+|++... .. ...+++|..........                    .+   ..++.||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~~-~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt   78 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDV-EI-ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC-cc-cCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence            3799999999999999999999873 11 12334444333322110                    12   247999999


Q ss_pred             CCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC
Q 024985           77 PGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR  116 (259)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~  116 (259)
                      ||+........    .+..........+|++++|+|++.+
T Consensus        79 pG~~~~a~~~~----~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           79 AGLVPGAHEGR----GLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             C-------------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CCcccchhhhh----hHHHHHHHHHhcCCEEEEEEecccc
Confidence            99864321111    1222223456789999999999743

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.56  E-value=4.8e-14  Score=130.89  Aligned_cols=120  Identities=18%  Similarity=0.234  Sum_probs=79.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCccc-------ccC---------CCCCcceeeEEEEEEeeCCcEEEEEeCCCC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFK-------SKA---------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~-------~~~---------~~~~~T~~~~~~~~~~~~~~~~~liDTPG~   79 (259)
                      ....++|+++|.+|+|||||+|+|+......       .+.         ...+.|.......+. ..+..++||||||.
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~-~~~~~i~liDTPG~   87 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF-WKDHRINIIDTPGH   87 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEE-ETTEEEEEECCCSS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEE-ECCeEEEEEECcCc
Confidence            3457899999999999999999998321000       000         012344444444343 46789999999998


Q ss_pred             CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      .+.       .......+.    .+|++|+|+|++.+.+..+...+..+.. .+    .|+++|+||+|+...
T Consensus        88 ~df-------~~~~~~~l~----~aD~~ilVvDa~~g~~~~t~~~~~~~~~-~~----~p~ivviNKiD~~~~  144 (691)
T 1dar_A           88 VDF-------TIEVERSMR----VLDGAIVVFDSSQGVEPQSETVWRQAEK-YK----VPRIAFANKMDKTGA  144 (691)
T ss_dssp             TTC-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHH-TT----CCEEEEEECTTSTTC
T ss_pred             cch-------HHHHHHHHH----HCCEEEEEEECCCCcchhhHHHHHHHHH-cC----CCEEEEEECCCcccC
Confidence            653       223333333    4599999999998888888777776654 33    399999999998754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.56  E-value=2.6e-14  Score=120.35  Aligned_cols=164  Identities=13%  Similarity=0.099  Sum_probs=92.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      +|+++|.+|||||||++.+.+..... .....+.|.......+  .....+.+|||||......+.      +  ....+
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~-~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~------l--~~~~y   69 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPL-DTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS------Y--DSERL   69 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSG-GGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS------H--HHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCC-ccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh------h--hhhhh
Confidence            58999999999999999887654322 1112233333333222  233689999999976542110      0  01234


Q ss_pred             CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccH----HhhhCCCCCchHHHHHHHc
Q 024985          101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETL----EDYLGPECPKPLKEILQLC  176 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~----~~~~~~~~~~~l~~~~~~~  176 (259)
                      +++++++|+|+|+++++...-..+.+++..........|+++|+||+|+..+  +..    ++...    ...+++.+..
T Consensus        70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~--~~R~~~~R~V~~----~~~~~la~~~  143 (331)
T 3r7w_B           70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE--DFKVDAQRDIMQ----RTGEELLELG  143 (331)
T ss_dssp             HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS--HHHHHHHHHHHH----HHHHTTSSSS
T ss_pred             ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch--hhhhhHHHHhhH----HHHHHHHhhc
Confidence            5788999999999866333222332333332111123499999999998765  221    11110    0111111110


Q ss_pred             --CCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          177 --ENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       177 --~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                        +....+|.+++.+     .++.+.+..|..
T Consensus       144 ~~~~~i~f~eTSAkd-----~nV~eAFs~iv~  170 (331)
T 3r7w_B          144 LDGVQVSFYLTSIFD-----HSIYEAFSRIVQ  170 (331)
T ss_dssp             CSCCCEEEECCCSSS-----SHHHHHHHHHHT
T ss_pred             ccccCceEEEeccCC-----CcHHHHHHHHHH
Confidence              1356678888764     467777776544

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.56  E-value=2.2e-16  Score=144.07  Aligned_cols=121  Identities=17%  Similarity=0.163  Sum_probs=63.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCccccc-----------------------------CCCCCcceeeEEEEEEee
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSK-----------------------------AGSSGVTKTCEMQRTMLK   66 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~-----------------------------~~~~~~T~~~~~~~~~~~   66 (259)
                      ....++|+++|.+|+|||||+|+|++.......                             ....+.|.......+. .
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~-~  252 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE-S  252 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE-e
Confidence            345679999999999999999999643210000                             0023455555555444 4


Q ss_pred             CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-----C--CHhHHHHHHHHHHHhcccccCe
Q 024985           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-----F--SEEGGAAIHSLESLFGKKVFDY  139 (259)
Q Consensus        67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-----~--~~~~~~~l~~l~~~~~~~~~~~  139 (259)
                      .+..+.||||||..+..           ..+...+..+|++|+|+|++.+     +  ..+..+.+..+.. ++.   .+
T Consensus       253 ~~~~i~iiDTPGh~~f~-----------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgi---p~  317 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFI-----------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGI---SE  317 (592)
T ss_dssp             ------CCEEESSSEEE-----------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSC---CC
T ss_pred             CCeEEEEEECCChHHHH-----------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---Ce
Confidence            56789999999976421           1122344577999999999853     3  5666666666554 443   24


Q ss_pred             EEEEEeCCCCCCC
Q 024985          140 MIVVFTGGNELED  152 (259)
Q Consensus       140 ~ivV~nk~D~~~~  152 (259)
                      ++||+||+|+...
T Consensus       318 iIvviNKiDl~~~  330 (592)
T 3mca_A          318 IVVSVNKLDLMSW  330 (592)
T ss_dssp             EEEEEECGGGGTT
T ss_pred             EEEEEeccccccc
Confidence            8999999998753

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.56  E-value=3e-14  Score=124.42  Aligned_cols=155  Identities=18%  Similarity=0.245  Sum_probs=82.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC----CCcceeeEEEEEEe-eCC--cEEEEEeCCCCCCCCCCh---H
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS----SGVTKTCEMQRTML-KDG--QVVNVIDTPGLFDSSADS---E   87 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~----~~~T~~~~~~~~~~-~~~--~~~~liDTPG~~~~~~~~---~   87 (259)
                      -.++|+|+|++|||||||+|.|+|...+..+...    ...|.......+.. ..+  ..+.+|||||+.......   .
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            4578999999999999999999998753332110    01122222111111 112  268999999987542111   1


Q ss_pred             HHHH----HHHHHH-------hhcC--CCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC
Q 024985           88 FVSK----EIVKCI-------GMAK--DGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDN  153 (259)
Q Consensus        88 ~~~~----~~~~~~-------~~~~--~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~  153 (259)
                      .+..    .+...+       ...+  +.+|++||+++++ .++...+..+++.+..      ..|+|+|+||+|++.. 
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll~~-  182 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTP-  182 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSSCH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCccH-
Confidence            1111    111111       1112  3456788888776 5788888767666642      2499999999999865 


Q ss_pred             cccHHhhhCCCCCchHHHHHHHcCCcEEEEeC
Q 024985          154 DETLEDYLGPECPKPLKEILQLCENRRVLFDN  185 (259)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  185 (259)
                       ..+..+..     .+...+...+..++.|+.
T Consensus       183 -~ev~~~k~-----~i~~~~~~~~i~~~~~sa  208 (418)
T 2qag_C          183 -EECQQFKK-----QIMKEIQEHKIKIYEFPE  208 (418)
T ss_dssp             -HHHHHHHH-----HHHHHHHHHTCCCCCCC-
T ss_pred             -HHHHHHHH-----HHHHHHHHcCCeEEeCCC
Confidence             44443322     344555555555555543

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.55  E-value=2.5e-14  Score=124.84  Aligned_cols=169  Identities=12%  Similarity=0.105  Sum_probs=95.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      ..|+|+|++|||||||+|+|++......  ..+.+|..+....+.......+.++||||+.........+...+...   
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~--~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~---  232 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIA--PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRH---  232 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEEC--CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHH---
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCcccc--CcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHH---
Confidence            4589999999999999999998864222  22333444444434322237899999999865311110011122222   


Q ss_pred             cCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN  178 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (259)
                       ...++.+|+|+|++ +-...+ ..+.+.+..+...-..+|.++|+||+|....  ..++         .+...+...+.
T Consensus       233 -~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~---------~l~~~l~~~g~  299 (416)
T 1udx_A          233 -IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVK---------ALADALAREGL  299 (416)
T ss_dssp             -HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHH---------HHHHHHHTTTS
T ss_pred             -HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHH---------HHHHHHHhcCC
Confidence             23569999999996 222222 1222233221100123499999999997632  1111         22233333333


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVNSVILENG  212 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~  212 (259)
                      .++..++  ...    .++.+|++.|.+.+.+..
T Consensus       300 ~vi~iSA--~~g----~gi~eL~~~i~~~l~~~~  327 (416)
T 1udx_A          300 AVLPVSA--LTG----AGLPALKEALHALVRSTP  327 (416)
T ss_dssp             CEEECCT--TTC----TTHHHHHHHHHHHHHTSC
T ss_pred             eEEEEEC--CCc----cCHHHHHHHHHHHHHhcc
Confidence            4333333  332    789999999999987654

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.54  E-value=2.5e-14  Score=128.82  Aligned_cols=119  Identities=14%  Similarity=0.169  Sum_probs=77.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccccc--------------------CCCCCcceeeEEEEEEeeCCcEEEEEeC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK--------------------AGSSGVTKTCEMQRTMLKDGQVVNVIDT   76 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~--------------------~~~~~~T~~~~~~~~~~~~~~~~~liDT   76 (259)
                      ...++|+++|.+|+|||||+|+|++.......                    ....+.|.......+. ..+..+.||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~-~~~~~i~liDT   89 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFP-YHDCLVNLLDT   89 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEE-ETTEEEEEECC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEE-ECCeEEEEEEC
Confidence            34689999999999999999999853211000                    0012223222233333 46789999999


Q ss_pred             CCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           77 PGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ||..+..       ...    ..++..+|++|+|+|++.+.......++..+.. .+    .|+++|+||+|+...
T Consensus        90 PG~~df~-------~~~----~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~-~~----ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           90 PGHEDFS-------EDT----YRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL-RD----TPILTFMNKLDRDIR  149 (529)
T ss_dssp             CCSTTCC-------HHH----HHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT-TT----CCEEEEEECTTSCCS
T ss_pred             CCChhHH-------HHH----HHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH-cC----CCEEEEEcCcCCccc
Confidence            9986542       122    223456799999999987777776666665543 23    399999999998754

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.53  E-value=6.6e-14  Score=129.98  Aligned_cols=119  Identities=20%  Similarity=0.294  Sum_probs=79.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccc--c-CC-------------CCCcceeeEEEEEEeeCCcEEEEEeCCCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKS--K-AG-------------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLF   80 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~--~-~~-------------~~~~T~~~~~~~~~~~~~~~~~liDTPG~~   80 (259)
                      ...++|+++|.+|+|||||+|+|++......  + ..             ..+.|.......+. ..+..++||||||+.
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~-~~~~~i~liDTPG~~   86 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA-WEGHRVNIIDTPGHV   86 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEE-ETTEEEEEECCCCCS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEE-ECCeeEEEEECcCCc
Confidence            4568999999999999999999984211000  0 00             12334333333333 467899999999987


Q ss_pred             CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      +...       .+...+.    .+|++|+|+|++.+.+..+...+..+.. .+    .|+++|+||+|+...
T Consensus        87 df~~-------~~~~~l~----~aD~~llVvDa~~g~~~~~~~~~~~~~~-~~----~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           87 DFTV-------EVERSLR----VLDGAVTVLDAQSGVEPQTETVWRQATT-YG----VPRIVFVNKMDKLGA  142 (693)
T ss_dssp             SCCH-------HHHHHHH----HCSEEEEEEETTTBSCHHHHHHHHHHHH-TT----CCEEEEEECTTSTTC
T ss_pred             chHH-------HHHHHHH----HCCEEEEEECCCCCCcHHHHHHHHHHHH-cC----CCEEEEEECCCcccc
Confidence            6421       2333333    3599999999998888888777777655 33    399999999998754

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.53  E-value=1.8e-14  Score=128.15  Aligned_cols=118  Identities=19%  Similarity=0.190  Sum_probs=68.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCc-cc------------------------cc----CCCCCcceeeEEEEEEeeC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRA-FK------------------------SK----AGSSGVTKTCEMQRTMLKD   67 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~-~~------------------------~~----~~~~~~T~~~~~~~~~~~~   67 (259)
                      ...++|+++|.+++|||||+++|+.... +.                        ..    ....+.|.......+. .+
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~-~~  119 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE-TE  119 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE-CS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe-cC
Confidence            4458999999999999999999974210 00                        00    0013445555444343 46


Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-------CHhHHHHHHHHHHHhcccccCe-
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF-------SEEGGAAIHSLESLFGKKVFDY-  139 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-------~~~~~~~l~~l~~~~~~~~~~~-  139 (259)
                      +..+.||||||..+           +...+...+..+|++|+|+|++++.       ..+..+.+..+.. .+.    | 
T Consensus       120 ~~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v----p~  183 (467)
T 1r5b_A          120 HRRFSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI----NH  183 (467)
T ss_dssp             SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC----SS
T ss_pred             CeEEEEEECCCcHH-----------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC----CE
Confidence            78999999999643           2333344567889999999998653       1344444544433 342    5 


Q ss_pred             EEEEEeCCCCCC
Q 024985          140 MIVVFTGGNELE  151 (259)
Q Consensus       140 ~ivV~nk~D~~~  151 (259)
                      ++||+||+|+..
T Consensus       184 iivviNK~Dl~~  195 (467)
T 1r5b_A          184 LVVVINKMDEPS  195 (467)
T ss_dssp             EEEEEECTTSTT
T ss_pred             EEEEEECccCCC
Confidence            999999999864

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.51  E-value=1.6e-13  Score=124.05  Aligned_cols=118  Identities=16%  Similarity=0.204  Sum_probs=85.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc----------------cc----CCCCCcceeeEEEEEEeeCCcEEEEEeCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFK----------------SK----AGSSGVTKTCEMQRTMLKDGQVVNVIDTP   77 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~----------------~~----~~~~~~T~~~~~~~~~~~~~~~~~liDTP   77 (259)
                      ..++|+|+|..++|||||..+|+-.....                .+    ....+.|.......+. +++..++|||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTP  108 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFP-YRDRVVNLLDTP  108 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEE-ETTEEEEEECCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEE-ECCEEEEEEeCC
Confidence            46899999999999999999986211000                00    1112444444444455 578899999999


Q ss_pred             CCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           78 GLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      |..|+..       ++.+.+..+    |++|+|+|+..+...+...+++...+ .+.    |.++++||+|....
T Consensus       109 GHvDF~~-------Ev~raL~~~----DgAvlVvda~~GV~~qT~~v~~~a~~-~~l----p~i~fINK~Dr~~a  167 (548)
T 3vqt_A          109 GHQDFSE-------DTYRVLTAV----DSALVVIDAAKGVEAQTRKLMDVCRM-RAT----PVMTFVNKMDREAL  167 (548)
T ss_dssp             CGGGCSH-------HHHHHHHSC----SEEEEEEETTTBSCHHHHHHHHHHHH-TTC----CEEEEEECTTSCCC
T ss_pred             CcHHHHH-------HHHHHHHhc----CceEEEeecCCCcccccHHHHHHHHH-hCC----ceEEEEecccchhc
Confidence            9887643       566665555    99999999999999999999988776 443    99999999998765

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.50  E-value=1.8e-13  Score=126.65  Aligned_cols=117  Identities=25%  Similarity=0.267  Sum_probs=79.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC----------------CCCcceeeEEEEEEeeCCcEEEEEeCCCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG----------------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLF   80 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~----------------~~~~T~~~~~~~~~~~~~~~~~liDTPG~~   80 (259)
                      ....+|+++|++|+|||||+++|++.........                ..+.|.......+. ..+..++||||||..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~-~~~~~~nliDTpG~~   85 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL-FRGHRVFLLDAPGYG   85 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE-ETTEEEEEEECCCSG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEe-eCCEEEEEEeCCCcc
Confidence            3567999999999999999999984332100000                01233333333333 456789999999975


Q ss_pred             CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985           81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL  150 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~  150 (259)
                      +.       ...+...+.    .+|++++|+|++.++......++..+.. .+    .|+++|+||+|+.
T Consensus        86 ~f-------~~~~~~~l~----~ad~~ilVvD~~~g~~~qt~~~~~~~~~-~~----ip~ilv~NKiD~~  139 (665)
T 2dy1_A           86 DF-------VGEIRGALE----AADAALVAVSAEAGVQVGTERAWTVAER-LG----LPRMVVVTKLDKG  139 (665)
T ss_dssp             GG-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHH-TT----CCEEEEEECGGGC
T ss_pred             ch-------HHHHHHHHh----hcCcEEEEEcCCcccchhHHHHHHHHHH-cc----CCEEEEecCCchh
Confidence            42       223333333    4599999999988888888877777765 33    3999999999987

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.50  E-value=1.9e-13  Score=117.59  Aligned_cols=110  Identities=17%  Similarity=0.111  Sum_probs=61.6

Q ss_pred             CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeC
Q 024985           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTG  146 (259)
Q Consensus        67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk  146 (259)
                      .+..++||||||+..+          ....    ...+|++|+|+|+........   +.  ....    ..|+++|+||
T Consensus       170 ~~~~~iiiDTpGi~~~----------~~~~----~~~aD~vl~V~d~~~~~~~~~---l~--~~~~----~~p~ivVlNK  226 (355)
T 3p32_A          170 AGFDVILIETVGVGQS----------EVAV----ANMVDTFVLLTLARTGDQLQG---IK--KGVL----ELADIVVVNK  226 (355)
T ss_dssp             TTCCEEEEEECSCSSH----------HHHH----HTTCSEEEEEEESSTTCTTTT---CC--TTSG----GGCSEEEEEC
T ss_pred             CCCCEEEEeCCCCCcH----------HHHH----HHhCCEEEEEECCCCCccHHH---HH--HhHh----hcCCEEEEEC
Confidence            4568999999997641          1111    256799999999863221111   11  1111    2399999999


Q ss_pred             CCCCCCCcccHHhhhCCCCCchHHHHHHHcC-----CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          147 GNELEDNDETLEDYLGPECPKPLKEILQLCE-----NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +|+...  ........     .+...+....     +...++..++..    ..|+.+|++.|.+.+..
T Consensus       227 ~Dl~~~--~~~~~~~~-----~l~~~l~~~~~~~~~~~~~vi~iSA~~----g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          227 ADGEHH--KEARLAAR-----ELSAAIRLIYPREALWRPPVLTMSAVE----GRGLAELWDTVERHRQV  284 (355)
T ss_dssp             CCGGGH--HHHHHHHH-----HHHHHHHHHSTTCCSCCCCEEEEBGGG----TBSHHHHHHHHHHHHHH
T ss_pred             CCCcCh--hHHHHHHH-----HHHHHHhhccccccCCCCceEEEEcCC----CCCHHHHHHHHHHHHHH
Confidence            998643  22221111     2223332221     111233333333    37999999999998876

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.50  E-value=3.3e-13  Score=125.44  Aligned_cols=119  Identities=17%  Similarity=0.230  Sum_probs=79.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCc-ccc------c-----C----CCCCcceeeEEEEEEeeCC-------cEEEE
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRA-FKS------K-----A----GSSGVTKTCEMQRTMLKDG-------QVVNV   73 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~-~~~------~-----~----~~~~~T~~~~~~~~~~~~~-------~~~~l   73 (259)
                      ...++|+++|..|+|||||+++|+.... +..      +     .    ...+.|.......+. ..+       ..++|
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~-~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAF-WSGMAKQYEPHRINI   86 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEE-ECCccccCCceeEEE
Confidence            4568999999999999999999974321 000      0     0    012334444433333 233       78999


Q ss_pred             EeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           74 IDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        74 iDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      |||||..+.       ...+..    +...+|++|+|+|++.+........+..+.. .+    .|+++|+||+|+...
T Consensus        87 iDTPG~~df-------~~~~~~----~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~-~~----ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           87 IDTPGHVDF-------TIEVER----SMRVLDGAVMVYCAVGGVQPQSETVWRQANK-YK----VPRIAFVNKMDRMGA  149 (704)
T ss_pred             EeCCCccch-------HHHHHH----HHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH-cC----CCEEEEEeCCCcccc
Confidence            999997642       122333    3345699999999997877777666665543 23    399999999998754

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.48  E-value=2.1e-14  Score=117.94  Aligned_cols=89  Identities=13%  Similarity=0.095  Sum_probs=50.7

Q ss_pred             CccEEEEEEeCCCC--CCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985          103 GIHAVLLVFSVRNR--FSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR  179 (259)
Q Consensus       103 ~~~~il~v~d~~~~--~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (259)
                      ++|++|+|+|++++  .+... ..++..+..... ....|+++|+||+|+...  ..++         ....+..... .
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~--~~v~---------~~~~~~~~~~-~  228 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGVE--RYIR---------DAHTFALSKK-N  228 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBCH--HHHH---------HHHHHHHTSS-S
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhc-cCCCCEEEEEEccccccc--HHHH---------HHHHHHHhcC-C
Confidence            58999999999854  44433 344444443211 123499999999998643  1121         2233333221 1


Q ss_pred             EEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          180 RVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      +.++..++..+    .++.++++.|.+.+
T Consensus       229 ~~~~e~SAk~g----~gv~elf~~l~~~l  253 (255)
T 3c5h_A          229 LQVVETSARSN----VNVDLAFSTLVQLI  253 (255)
T ss_dssp             CCEEECBTTTT----BSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCC----CCHHHHHHHHHHHh
Confidence            22444444433    78999999887765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.48  E-value=1.7e-13  Score=119.41  Aligned_cols=130  Identities=15%  Similarity=0.211  Sum_probs=73.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCC--CCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHH-------
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAG--SSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEF-------   88 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~--~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~-------   88 (259)
                      ++++|+|++|+|||||+|.|+|.........  .++.+.....+... ..+  ..+.++|+||++... ....       
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q-~~~l~~~ltv~D~~~~g~~~-~~~~~~~~i~~  120 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQ-ESNVRLKLTIVSTVGFGDQI-NKEDSYKPIVE  120 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEE-C--CEEEEEEEEEECCCC-C-CHHHHSHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEee-cCccccccchhhhhhhhhcc-ccchhhhHHHH
Confidence            4599999999999999999999864221111  12222221111111 112  268999999998642 2211       


Q ss_pred             -HHHHHHHHHhhc---------CCC--ccE-EEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcc
Q 024985           89 -VSKEIVKCIGMA---------KDG--IHA-VLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDE  155 (259)
Q Consensus        89 -~~~~~~~~~~~~---------~~~--~~~-il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~  155 (259)
                       +...+...+...         ...  +|+ ++|++|+..+++..|..+++.|.  .    ..|+|+|+||+|.+.+  .
T Consensus       121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~--~----~~~vI~Vi~KtD~Lt~--~  192 (427)
T 2qag_B          121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD--S----KVNIIPIIAKADAISK--S  192 (427)
T ss_dssp             HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC--S----CSEEEEEESCGGGSCH--H
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh--h----CCCEEEEEcchhccch--H
Confidence             122222222211         122  344 66677877789999977777764  1    2499999999999876  4


Q ss_pred             cHHh
Q 024985          156 TLED  159 (259)
Q Consensus       156 ~~~~  159 (259)
                      ++..
T Consensus       193 E~~~  196 (427)
T 2qag_B          193 ELTK  196 (427)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.46  E-value=3.9e-13  Score=115.22  Aligned_cols=110  Identities=12%  Similarity=0.065  Sum_probs=56.6

Q ss_pred             CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeC
Q 024985           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTG  146 (259)
Q Consensus        67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk  146 (259)
                      .+..+.||||||+...   .    ..+       ...+|++++|+|++.+...   ..+.  ...+.    .|.++|+||
T Consensus       165 ~~~~~iliDT~Gi~~~---~----~~l-------~~~~d~vl~V~d~~~~~~~---~~i~--~~il~----~~~ivVlNK  221 (349)
T 2www_A          165 AGYDIILIETVGVGQS---E----FAV-------ADMVDMFVLLLPPAGGDEL---QGIK--RGIIE----MADLVAVTK  221 (349)
T ss_dssp             TTCSEEEEECCCC--C---H----HHH-------HTTCSEEEEEECCC-----------------CC----SCSEEEECC
T ss_pred             CCCCEEEEECCCcchh---h----hhH-------HhhCCEEEEEEcCCcchhH---HHhH--HHHHh----cCCEEEEee
Confidence            5668999999998642   1    111       2367999999998743211   1111  11222    388999999


Q ss_pred             CCCCCCCcccHHhhhCCCCCchHHHHHHHc-----CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          147 GNELEDNDETLEDYLGPECPKPLKEILQLC-----ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +|+.+.  ........     .+...+...     .+.+.++..++.++    .|+.+|++.|.+.+..
T Consensus       222 ~Dl~~~--~~~~~~~~-----~l~~~l~~~~~~a~~~~~~vi~iSA~~g----~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          222 SDGDLI--VPARRIQA-----EYVSALKLLRKRSQVWKPKVIRISARSG----EGISEMWDKMKDFQDL  279 (349)
T ss_dssp             CSGGGH--HHHHHHHH-----HHHHHHTTCC-----CCCEEEECCTTTC----TTHHHHHHHHHHHHHH
T ss_pred             ecCCCc--hhHHHHHH-----HHHHHHHhcCccccCCCceEEEEecCCC----CCHHHHHHHHHHHHHH
Confidence            998642  11110000     111111110     11222344444443    7999999999888764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.45  E-value=1.4e-12  Score=111.43  Aligned_cols=109  Identities=10%  Similarity=0.089  Sum_probs=59.0

Q ss_pred             CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeC
Q 024985           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTG  146 (259)
Q Consensus        67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk  146 (259)
                      .+..++||||||+.+.    .   ..+       ...+|++|+|+|++....   ...+..  ...+    .|.++|+||
T Consensus       147 ~~~~i~liDTpG~~~~----~---~~~-------~~~aD~vl~Vvd~~~~~~---~~~l~~--~~~~----~p~ivv~NK  203 (341)
T 2p67_A          147 AGYDVVIVETVGVGQS----E---TEV-------ARMVDCFISLQIAGGGDD---LQGIKK--GLME----VADLIVINK  203 (341)
T ss_dssp             TTCSEEEEEEECCTTH----H---HHH-------HTTCSEEEEEECC---------CCCCH--HHHH----HCSEEEECC
T ss_pred             cCCCEEEEeCCCccch----H---HHH-------HHhCCEEEEEEeCCccHH---HHHHHH--hhhc----ccCEEEEEC
Confidence            3568999999998642    1   111       257799999999863211   001110  1112    288999999


Q ss_pred             CCCCCCCcccHHhhhCCCCCchHHHHHHHcCC-----cEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          147 GNELEDNDETLEDYLGPECPKPLKEILQLCEN-----RRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      +|+...  ......+.     .++..+...+.     ...++..++..+    .|+.+|++.|.+.+.
T Consensus       204 ~Dl~~~--~~~~~~~~-----~l~~~l~~~~~~~~~~~~~vi~iSA~~g----~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          204 DDGDNH--TNVAIARH-----MYESALHILRRKYDEWQPRVLTCSALEK----RGIDEIWHAIIDFKT  260 (341)
T ss_dssp             CCTTCH--HHHHHHHH-----HHHHHHHHSCCSBTTBCCEEEECBGGGT----BSHHHHHHHHHHHHH
T ss_pred             CCCCCh--HHHHHHHH-----HHHHHHHhccccccCCCCcEEEeeCCCC----CCHHHHHHHHHHHHH
Confidence            998743  22221111     12222222221     223444444333    789999999988765

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.42  E-value=1.3e-12  Score=109.69  Aligned_cols=173  Identities=16%  Similarity=0.155  Sum_probs=78.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC-----CCcceeeEEEEEEe-eC--CcEEEEEeCCCCCCCCCChH--
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS-----SGVTKTCEMQRTML-KD--GQVVNVIDTPGLFDSSADSE--   87 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~-----~~~T~~~~~~~~~~-~~--~~~~~liDTPG~~~~~~~~~--   87 (259)
                      -.++|+|+|++|||||||+|.|+|...++....+     ...|.......+.. ..  ...+.+|||||+.......+  
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            4589999999999999999999987433221100     01121111111111 11  24789999999853321000  


Q ss_pred             -HHHH----HHHHHHhhc---------CCCccEEEEEEeCCC-CCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           88 -FVSK----EIVKCIGMA---------KDGIHAVLLVFSVRN-RFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        88 -~~~~----~~~~~~~~~---------~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                       .+..    .+...+...         ...+++++|+++++. ++...+..+++.+    ..  ..++++|+||+|+...
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l----~~--~~~iilV~~K~Dl~~~  170 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HN--KVNIVPVIAKADTLTL  170 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHH----TT--TSCEEEEECCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHH----Hh--cCCEEEEEEeCCCCCH
Confidence             1111    111222111         124567778777653 4877765444333    22  2389999999998754


Q ss_pred             CcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          153 NDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                        ..+..+.     ..+...+...+..++.+  ++..    . ++.+++..+.+.+.+
T Consensus       171 --~e~~~~~-----~~~~~~~~~~~~~~~e~--Sa~~----~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          171 --KERERLK-----KRILDEIEEHNIKIYHL--PDAE----S-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             --HHHHHHH-----HHHHHHHHHTTCCCCCC--C--------------CHHHHHHHHT
T ss_pred             --HHHHHHH-----HHHHHHHHHcCCeEEec--CCcc----c-cccHHHHHHHHHhhc
Confidence              2332111     13445555555443333  3322    2 577777766665543

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.40  E-value=6.6e-13  Score=109.79  Aligned_cols=149  Identities=17%  Similarity=0.237  Sum_probs=85.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCC-----CCcceeeEEEEEEee-CC--cEEEEEeCCCCCCCCCCh---HH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGS-----SGVTKTCEMQRTMLK-DG--QVVNVIDTPGLFDSSADS---EF   88 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~-----~~~T~~~~~~~~~~~-~~--~~~~liDTPG~~~~~~~~---~~   88 (259)
                      ++++|+|++|+|||||+|.|+|...+..+...     .+.+.......+... .+  ..+.++|+||++......   ..
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~   82 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP   82 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence            68999999999999999999987654332110     111111111111111 11  268999999997643211   11


Q ss_pred             HH----HHHHHHHhh----------cCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCC
Q 024985           89 VS----KEIVKCIGM----------AKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDN  153 (259)
Q Consensus        89 ~~----~~~~~~~~~----------~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~  153 (259)
                      +.    ..+......          ....+++.++++|.. .++.+.+..+++.+.+.      .++++|+||+|.+.. 
T Consensus        83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~-  155 (270)
T 3sop_A           83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL-  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH-
T ss_pred             HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH-
Confidence            11    112222211          123468889999865 78999998888877653      399999999999976 


Q ss_pred             cccHHhhhCCCCCchHHHHHHHcCCcEE
Q 024985          154 DETLEDYLGPECPKPLKEILQLCENRRV  181 (259)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~  181 (259)
                       .++..+..     .++..+...+..++
T Consensus       156 -~e~~~~k~-----~i~~~l~~~~i~i~  177 (270)
T 3sop_A          156 -EEKSEFKQ-----RVRKELEVNGIEFY  177 (270)
T ss_dssp             -HHHHHHHH-----HHHHHHHHTTCCCS
T ss_pred             -HHHHHHHH-----HHHHHHHHcCcccc
Confidence             55554433     34544555554443

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.36  E-value=5.7e-13  Score=113.98  Aligned_cols=89  Identities=16%  Similarity=0.067  Sum_probs=55.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC-----------------cEEEEEeCCCCCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG-----------------QVVNVIDTPGLFDS   82 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~~~~liDTPG~~~~   82 (259)
                      .+|+++|.+|||||||+|+|++.... . ...+++|..+....+. .++                 ..+.+|||||+...
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~-v-~~~p~tTi~p~~g~v~-~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~   79 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIE-A-ANYPFCTIEPNTGVVP-MPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEE-CCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCc-c-cCCCCceECceEEEEe-cCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence            58999999999999999999987631 1 1223445444433333 222                 47999999998753


Q ss_pred             CCChHHHHHHHHHHHhhcCCCccEEEEEEeCCC
Q 024985           83 SADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRN  115 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~  115 (259)
                      ......+...+...    ++.+|++++|+|+++
T Consensus        80 a~~~~gl~~~fl~~----ir~ad~il~VvD~~~  108 (363)
T 1jal_A           80 ASKGEGLGNKFLAN----IRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHHGGGTCCHHHH----HHTCSEEEEEEECSC
T ss_pred             ccccchHHHHHHHH----HHhcCeEEEEEecCC
Confidence            21111122222222    346799999999873

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.36  E-value=5.4e-12  Score=117.65  Aligned_cols=120  Identities=23%  Similarity=0.293  Sum_probs=83.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccc-------c---------CCCCCcceeeEEEEEEee------CCcEEEEE
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKS-------K---------AGSSGVTKTCEMQRTMLK------DGQVVNVI   74 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~-------~---------~~~~~~T~~~~~~~~~~~------~~~~~~li   74 (259)
                      +..++|+++|..++|||||..+|+-......       +         ....+.|.......+.|.      ++..++||
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            4568999999999999999998862211000       0         011234444433333332      24689999


Q ss_pred             eCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           75 DTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        75 DTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ||||.-|+       ..++...+..+    |++|+|+|+..+...++..+++...+ .+.    |.++++||+|....
T Consensus        91 DTPGHvDF-------~~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~-~~l----p~i~~iNKiDr~~a  152 (709)
T 4fn5_A           91 DTPGHVDF-------TIEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANK-YGV----PRIVYVNKMDRQGA  152 (709)
T ss_dssp             CCCSCTTC-------HHHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHH-HTC----CEEEEEECSSSTTC
T ss_pred             eCCCCccc-------HHHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEccccccCc
Confidence            99998876       34666666666    99999999999999999999988766 343    99999999998754

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.35  E-value=2e-12  Score=122.37  Aligned_cols=118  Identities=19%  Similarity=0.238  Sum_probs=77.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccC--------------CCCCcceeeEEEEEEee---------------C
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKA--------------GSSGVTKTCEMQRTMLK---------------D   67 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~--------------~~~~~T~~~~~~~~~~~---------------~   67 (259)
                      ...++|+++|++|+|||||+|+|++........              ...+.|.........+.               .
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            346799999999999999999998642111100              01122322222222221               1


Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG  147 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~  147 (259)
                      +..+.||||||..+...       .....    ...+|++|+|+|++++.+.++...+..+.. .+    .|+++|+||+
T Consensus        97 ~~~i~liDTPG~~df~~-------~~~~~----l~~aD~ailVvDa~~g~~~qt~~~~~~~~~-~~----~p~ilviNK~  160 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSS-------EVTAA----LRVTDGALVVVDTIEGVCVQTETVLRQALG-ER----IKPVVVINKV  160 (842)
T ss_dssp             EEEEEEECCCCCCSSCH-------HHHHH----HHTCSEEEEEEETTTBSCHHHHHHHHHHHH-TT----CEEEEEEECH
T ss_pred             CceEEEEECcCchhhHH-------HHHHH----HHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCeEEEEECC
Confidence            46899999999876432       23333    345699999999998888888766665443 22    3999999999


Q ss_pred             CCC
Q 024985          148 NEL  150 (259)
Q Consensus       148 D~~  150 (259)
                      |+.
T Consensus       161 D~~  163 (842)
T 1n0u_A          161 DRA  163 (842)
T ss_dssp             HHH
T ss_pred             Ccc
Confidence            986

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.34  E-value=8.4e-13  Score=121.57  Aligned_cols=117  Identities=18%  Similarity=0.273  Sum_probs=84.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccccc---C----C---------CCCcceeeEEEEEEeeCCcEEEEEeCCCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSK---A----G---------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS   82 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~---~----~---------~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~   82 (259)
                      .++|+++|..++|||||..+|+-.......   .    .         ..+.|.......+. +++..++||||||..|+
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTPGH~DF   80 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ-WENTKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCB-CSSCBCCCEECCCSSST
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEE-ECCEEEEEEECCCcHHH
Confidence            468999999999999999998621110000   0    0         01344444444444 56788999999998875


Q ss_pred             CCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           83 SADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                             ..++...+..    +|++|+|+|+..+...++..+++.+.+ .+.    |.++++||+|....
T Consensus        81 -------~~Ev~raL~~----~DgavlVVDa~~GV~~qT~~v~~~a~~-~~l----p~i~~INKmDr~~a  134 (638)
T 3j25_A           81 -------LAEVYRSLSV----LDGAILLISAKDGVQAQTRILFHALRK-MGI----PTIFFINKIDQNGI  134 (638)
T ss_dssp             -------HHHHHHHHTT----CSEEECCEESSCTTCSHHHHHHHHHHH-HTC----SCEECCEECCSSSC
T ss_pred             -------HHHHHHHHHH----hCEEEEEEeCCCCCcHHHHHHHHHHHH-cCC----CeEEEEeccccccC
Confidence                   3355555544    499999999998999999989988877 443    88999999998765

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.31  E-value=3.9e-12  Score=109.35  Aligned_cols=90  Identities=20%  Similarity=0.171  Sum_probs=56.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee--------------------CCcEEEEEeCCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK--------------------DGQVVNVIDTPGL   79 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--------------------~~~~~~liDTPG~   79 (259)
                      ++|+++|.+|||||||+|+|++... .. ...+.+|..+........                    .+..+.+|||||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~-~v-~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANA-LA-ANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHT-TC-SSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC-cc-cCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            5799999999999999999998642 11 112333433333222111                    1347999999999


Q ss_pred             CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCC
Q 024985           80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRN  115 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~  115 (259)
                      .......+.+...+...+    +.+|++++|+|+.+
T Consensus        80 ~~~a~~~~~lg~~fl~~i----r~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHI----REVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHH----HTCSEEEEEEECCC
T ss_pred             cccccccchHHHHHHHHH----HhCCEEEEEEECCC
Confidence            865332222333343333    35699999999873

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.30  E-value=1.1e-13  Score=119.29  Aligned_cols=124  Identities=17%  Similarity=0.184  Sum_probs=70.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc-----cccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF-----KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI   93 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~-----~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~   93 (259)
                      ..+|+++|.+|+|||||+|+|++....     ......+++|+.......    +..+.++||||+.+.....+.+..+.
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL----DEESSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES----SSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe----cCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence            368999999999999999999986311     111233455655544321    22388999999987542222222222


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ...+ .....++.++|+++....+.......++.+..     ...|+++|+||+|.+..
T Consensus       236 l~~~-~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~-----~~~~~~~v~nk~d~~~~  288 (368)
T 3h2y_A          236 LKLI-TPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG-----GRRAFTCHFSNRLTIHR  288 (368)
T ss_dssp             HHHH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEES-----SSEEEEEEECTTSCEEE
T ss_pred             HHHh-ccccccCceEEEEcCCCEEEEcceEEEEEecC-----CCceEEEEecCcccccc
Confidence            2221 12356788999998842211111111222221     12399999999999865

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.30  E-value=7.1e-12  Score=102.92  Aligned_cols=182  Identities=13%  Similarity=0.057  Sum_probs=91.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh-----CCCcccccCCCCCcce----------eeEEEEE-------------------
Q 024985           18 AERTLVLVGRTGNGKSATGNSIL-----GRRAFKSKAGSSGVTK----------TCEMQRT-------------------   63 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~-----~~~~~~~~~~~~~~T~----------~~~~~~~-------------------   63 (259)
                      ....+++.|+.||||||+++.|.     |..+......+.....          .......                   
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM   92 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence            45789999999999999999998     6654333322211000          0000000                   


Q ss_pred             -----------EeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHH-HHHHHHHH
Q 024985           64 -----------MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGA-AIHSLESL  131 (259)
Q Consensus        64 -----------~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~-~l~~l~~~  131 (259)
                                 ....+..++||||||..+.     .....+...+...... +++++|+|+.......+.. ........
T Consensus        93 ~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~-----~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~  166 (262)
T 1yrb_A           93 EKFNEYLNKILRLEKENDYVLIDTPGQMET-----FLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI  166 (262)
T ss_dssp             TTHHHHHHHHHHHHHHCSEEEEECCSSHHH-----HHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhcCCEEEEeCCCccch-----hhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH
Confidence                       0001237999999996421     0001111112223345 8999999986444444422 11111110


Q ss_pred             hcccccCeEEEEEeCCCCCCCCc-ccHHhhhCCCCCchHHH-----------------HHHHcCCcEEEEeCCCcccccc
Q 024985          132 FGKKVFDYMIVVFTGGNELEDND-ETLEDYLGPECPKPLKE-----------------ILQLCENRRVLFDNKTKDAATR  193 (259)
Q Consensus       132 ~~~~~~~~~ivV~nk~D~~~~~~-~~~~~~~~~~~~~~l~~-----------------~~~~~~~~~~~~~~~~~~~~~~  193 (259)
                      . .....|+++|+||+|+..... ..+++++.. .......                 +++..+....++..++..+   
T Consensus       167 ~-~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~---  241 (262)
T 1yrb_A          167 D-LRLGATTIPALNKVDLLSEEEKERHRKYFED-IDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTR---  241 (262)
T ss_dssp             H-HHHTSCEEEEECCGGGCCHHHHHHHHHHHHC-HHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTC---
T ss_pred             h-cccCCCeEEEEecccccccccHHHHHHHHhC-hHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCc---
Confidence            1 111249999999999875410 112222211 0000111                 1233332212333344333   


Q ss_pred             hhHHHHHHHHHHHHHHHh
Q 024985          194 TEQVGKLISLVNSVILEN  211 (259)
Q Consensus       194 ~~~i~eLl~~i~~~~~~~  211 (259)
                       .++.+|++.|.+.+...
T Consensus       242 -~gi~~l~~~i~~~~~~~  258 (262)
T 1yrb_A          242 -EGFEDLETLAYEHYCTC  258 (262)
T ss_dssp             -TTHHHHHHHHHHHHHHH
T ss_pred             -ccHHHHHHHHHHHhccc
Confidence             79999999999888754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.28  E-value=1.1e-13  Score=119.39  Aligned_cols=123  Identities=19%  Similarity=0.181  Sum_probs=73.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC-----CcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR-----RAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI   93 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~-----~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~   93 (259)
                      ..+|+++|.+|+|||||+|+|++.     ..... ...+++|.......    -+..+.++||||+.+.......+..+.
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~-~~~~gtT~~~~~~~----~~~~~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITT-SYFPGTTLDMIEIP----LESGATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEE-EECTTSSCEEEEEE----CSTTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceee-cCCCCeEEeeEEEE----eCCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence            457999999999999999999987     22222 22345666554432    123478999999986542222222222


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           94 VKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ...+ .....+|+++|++++.+.+.......++.+..     ...|+++++||.|.+..
T Consensus       237 l~~~-~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~-----~~~~~~~v~~k~d~~~~  289 (369)
T 3ec1_A          237 LKII-TPKREIHPRVYQLNEGQTLFFGGLARLDYIKG-----GRRSFVCYMANELTVHR  289 (369)
T ss_dssp             HHHH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEES-----SSEEEEEEECTTSCEEE
T ss_pred             HHHH-hcccccCceEEEEcCCceEEECCEEEEEEccC-----CCceEEEEecCCccccc
Confidence            2222 12256799999999852211111111222221     12389999999998855

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.25  E-value=2.7e-10  Score=97.02  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ....++|+|++|||||||+|.|++
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999983

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.24  E-value=1.2e-11  Score=98.88  Aligned_cols=155  Identities=12%  Similarity=0.075  Sum_probs=82.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC-----cccccCCCCCcce--------eeEEEEEE-----------------eeC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR-----AFKSKAGSSGVTK--------TCEMQRTM-----------------LKD   67 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~-----~~~~~~~~~~~T~--------~~~~~~~~-----------------~~~   67 (259)
                      ..++|+++|.+|||||||+|.|++..     .......+ +.+.        ......+.                 ...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDV-VSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS  107 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSC-CCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCC-CCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence            45799999999999999999998642     11111111 1110        00000000                 012


Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG  147 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~  147 (259)
                      +..+.+|||||......              ......+.+++|+|++.....    ..... ...+    .|.++|+||+
T Consensus       108 ~~d~iiidt~G~~~~~~--------------~~~~~~~~~i~vvd~~~~~~~----~~~~~-~~~~----~~~iiv~NK~  164 (221)
T 2wsm_A          108 DCDLLLIENVGNLICPV--------------DFDLGENYRVVMVSVTEGDDV----VEKHP-EIFR----VADLIVINKV  164 (221)
T ss_dssp             TCSEEEEEEEEBSSGGG--------------GCCCSCSEEEEEEEGGGCTTH----HHHCH-HHHH----TCSEEEEECG
T ss_pred             CCCEEEEeCCCCCCCCc--------------hhccccCcEEEEEeCCCcchh----hhhhh-hhhh----cCCEEEEecc
Confidence            34688999988421100              011245788999998744221    11111 1122    3899999999


Q ss_pred             CCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          148 NELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      |+........+         .+...+...+....++..++..+    .++.+|++.+.+.+.
T Consensus       165 Dl~~~~~~~~~---------~~~~~~~~~~~~~~i~~~Sa~~g----~gi~~l~~~l~~~~~  213 (221)
T 2wsm_A          165 ALAEAVGADVE---------KMKADAKLINPRAKIIEMDLKTG----KGFEEWIDFLRGILN  213 (221)
T ss_dssp             GGHHHHTCCHH---------HHHHHHHHHCTTSEEEECBTTTT----BTHHHHHHHHHHHHC
T ss_pred             cCCcchhhHHH---------HHHHHHHHhCCCCeEEEeecCCC----CCHHHHHHHHHHHHH
Confidence            97632001122         22233333333333444444443    789999999887664

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.20  E-value=2.5e-10  Score=99.45  Aligned_cols=172  Identities=17%  Similarity=0.105  Sum_probs=96.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCccee-eEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKT-CEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~-~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ...++|+|++|||||||+|.|+|...+..+....+.+.. ...+.........+.++|+||++.....-.    ++...+
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~----~~L~~~  144 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD----TYLEKM  144 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHH----HHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHH----HHHHHc
Confidence            458999999999999999999996543333222211110 001111111123689999999874322211    222222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCC-------CCcccHHhhhCCCCCchHH
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELE-------DNDETLEDYLGPECPKPLK  170 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~-------~~~~~~~~~~~~~~~~~l~  170 (259)
                      .  ....+.+++ ++.. +.......+...+.. .+    .|+++|+||.|.+-       -+.....+++.     .++
T Consensus       145 ~--L~~~~~~~~-lS~G-~~~kqrv~la~aL~~-~~----~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~-----~l~  210 (413)
T 1tq4_A          145 K--FYEYDFFII-ISAT-RFKKNDIDIAKAISM-MK----KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQ-----DIR  210 (413)
T ss_dssp             T--GGGCSEEEE-EESS-CCCHHHHHHHHHHHH-TT----CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHH-----HHH
T ss_pred             C--CCccCCeEE-eCCC-CccHHHHHHHHHHHh-cC----CCeEEEEecCcccccCcccccCCHHHHHHHHH-----HHH
Confidence            2  122345544 7776 467777777777766 33    39999999998751       11112222221     233


Q ss_pred             HHH----HHc---CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985          171 EIL----QLC---ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILENG  212 (259)
Q Consensus       171 ~~~----~~~---~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~  212 (259)
                      .+.    ...   ....+.+++.....    .++++|.+.|.+.+++..
T Consensus       211 ~l~~~~l~~~g~~~~~iiliSsh~l~~----~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          211 LNCVNTFRENGIAEPPIFLLSNKNVCH----YDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             HHHHHHHHHTTCSSCCEEECCTTCTTS----TTHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHhcCCCCCcEEEEecCcCCc----cCHHHHHHHHHHhCccch
Confidence            332    121   12455666643322    579999999999887653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.20  E-value=4.4e-10  Score=100.21  Aligned_cols=123  Identities=13%  Similarity=0.162  Sum_probs=71.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCCCc-c--------e--eeEEEEEE--------------e
Q 024985           17 NAERTLVLVGRTGNGKSATGNSIL------GRRAFKSKAGSSGV-T--------K--TCEMQRTM--------------L   65 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~------~~~~~~~~~~~~~~-T--------~--~~~~~~~~--------------~   65 (259)
                      ....+|+++|.+||||||+++.|.      |..+......+... .        .  ...++...              .
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            346789999999999999999998      66543322211100 0        0  01111100              0


Q ss_pred             --eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe-EEE
Q 024985           66 --KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY-MIV  142 (259)
Q Consensus        66 --~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~iv  142 (259)
                        ..+..++||||||....   ...+..++......  ..+|.+++|+|+..+..  ....++.+.+.      .| ..|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~gv  245 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVASV  245 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCCE
T ss_pred             HHHCCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh------cCceEE
Confidence              15668999999998742   22233333333221  16789999999985543  33334444331      26 489


Q ss_pred             EEeCCCCCCC
Q 024985          143 VFTGGNELED  152 (259)
Q Consensus       143 V~nk~D~~~~  152 (259)
                      |+||+|....
T Consensus       246 VlNK~D~~~~  255 (504)
T 2j37_W          246 IVTKLDGHAK  255 (504)
T ss_dssp             EEECTTSCCC
T ss_pred             EEeCCccccc
Confidence            9999998743

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.20  E-value=2.1e-11  Score=105.31  Aligned_cols=92  Identities=17%  Similarity=0.179  Sum_probs=48.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC----------------CcEEEEEeCCCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD----------------GQVVNVIDTPGLF   80 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~----------------~~~~~liDTPG~~   80 (259)
                      ....+|+++|.+|||||||+|+|++...  .....+++|..+....+...+                ...+.+|||||+.
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~   97 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV   97 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence            3457899999999999999999999865  222234455444444333211                2259999999988


Q ss_pred             CCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985           81 DSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR  114 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (259)
                      ........+...+...    +..+|++++|+|+.
T Consensus        98 ~~as~~~glg~~~l~~----ir~aD~Il~VvD~~  127 (396)
T 2ohf_A           98 KGAHNGQGLGNAFLSH----ISACDGIFHLTRAF  127 (396)
T ss_dssp             ---------CCHHHHH----HHTSSSEEEEEEC-
T ss_pred             cccchhhHHHHHHHHH----HHhcCeEEEEEecC
Confidence            6433222232233333    34669999999986

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=99.16  E-value=1.1e-10  Score=105.87  Aligned_cols=109  Identities=19%  Similarity=0.210  Sum_probs=65.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCc-ccccCCCCCcceeeEEEEEE--eeCCcEEEEEeCCCCCCCCC-ChHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRA-FKSKAGSSGVTKTCEMQRTM--LKDGQVVNVIDTPGLFDSSA-DSEFVSK   91 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~T~~~~~~~~~--~~~~~~~~liDTPG~~~~~~-~~~~~~~   91 (259)
                      ..+..+|+|+|++|+|||||+|+|+|... +..+..+.++|.........  ...+..+.|+||||+.+... +...-..
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~  114 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW  114 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHH
Confidence            34568899999999999999999999874 22222223444433322111  12467899999999986432 1111111


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHH
Q 024985           92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLES  130 (259)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~  130 (259)
                      .+.-.+..+    +  ++|+++...++..+...+..+.+
T Consensus       115 ~fala~lls----s--~lv~n~~~~i~~~dl~~l~~v~e  147 (592)
T 1f5n_A          115 IFALAVLLS----S--TFVYNSIGTINQQAMDQLYYVTE  147 (592)
T ss_dssp             HHHHHHHHC----S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred             HHHHHHHhc----C--eEEEECCCCccHHHHHHHHHHHH
Confidence            111111112    2  46667666888888877776554

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=99.08  E-value=4.6e-09  Score=91.96  Aligned_cols=144  Identities=13%  Similarity=0.094  Sum_probs=79.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCCCc-----------ceeeEEEEEE--------------e-
Q 024985           18 AERTLVLVGRTGNGKSATGNSIL------GRRAFKSKAGSSGV-----------TKTCEMQRTM--------------L-   65 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~------~~~~~~~~~~~~~~-----------T~~~~~~~~~--------------~-   65 (259)
                      ++..|+++|++||||||+++.|.      |..+......+...           ......+...              . 
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999986      44332221111100           0001111000              0 


Q ss_pred             -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEE
Q 024985           66 -KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVF  144 (259)
Q Consensus        66 -~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~  144 (259)
                       ..+..++||||||....   ......++......  ..+|.+++|+|+..+  .........+.+..     .+..||+
T Consensus       179 ~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~--~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~-----~i~gVIl  246 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKE---DKALIEEMKQISNV--IHPHEVILVIDGTIG--QQAYNQALAFKEAT-----PIGSIIV  246 (443)
T ss_dssp             HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHH--HCCSEEEEEEEGGGG--GGHHHHHHHHHHSC-----TTEEEEE
T ss_pred             HhCCCCEEEEECCCcccc---hHHHHHHHHHHHHh--hcCceEEEEEeCCCc--hhHHHHHHHHHhhC-----CCeEEEE
Confidence             13467999999997642   23334444333222  246899999999743  22233344444322     2677999


Q ss_pred             eCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985          145 TGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       145 nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                      ||+|....             ...+..+...++.++.++...
T Consensus       247 TKlD~~~~-------------gG~~ls~~~~~g~PI~fig~G  275 (443)
T 3dm5_A          247 TKLDGSAK-------------GGGALSAVAATGAPIKFIGTG  275 (443)
T ss_dssp             ECCSSCSS-------------HHHHHHHHHTTCCCEEEEECS
T ss_pred             ECCCCccc-------------ccHHHHHHHHHCCCEEEEEcC
Confidence            99997643             112334445556666555543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.06  E-value=2.1e-09  Score=90.73  Aligned_cols=131  Identities=11%  Similarity=0.124  Sum_probs=75.3

Q ss_pred             eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC-------CCCC-HhHHHHHHHHHHHhccc--
Q 024985           66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR-------NRFS-EEGGAAIHSLESLFGKK--  135 (259)
Q Consensus        66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~-------~~~~-~~~~~~l~~l~~~~~~~--  135 (259)
                      .++..+.+|||+|-           +.+......++.+++++|||+|++       +.-+ ..-.+.+.++.......  
T Consensus       164 ~~~v~l~iwDtgGQ-----------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~  232 (327)
T 3ohm_A          164 LQSVIFRMVDVGGQ-----------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF  232 (327)
T ss_dssp             ETTEEEEEEEECCS-----------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred             eeceeeEEEEcCCc-----------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence            46678999999993           244555567889999999999764       1111 11123455555544332  


Q ss_pred             ccCeEEEEEeCCCCCCCC--cccHHhhhCCCC--Cc---hHHHHHH----H---c-CCcEEEEeCCCcccccchhHHHHH
Q 024985          136 VFDYMIVVFTGGNELEDN--DETLEDYLGPEC--PK---PLKEILQ----L---C-ENRRVLFDNKTKDAATRTEQVGKL  200 (259)
Q Consensus       136 ~~~~~ivV~nk~D~~~~~--~~~~~~~~~~~~--~~---~l~~~~~----~---~-~~~~~~~~~~~~~~~~~~~~i~eL  200 (259)
                      ...|+++++||+|+....  ...+..+.....  ..   .....+.    .   . ...++.+.+++.+.    .++.++
T Consensus       233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~----~nV~~v  308 (327)
T 3ohm_A          233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT----ENIRFV  308 (327)
T ss_dssp             TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH----HHHHHH
T ss_pred             CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC----HHHHHH
Confidence            235999999999986321  012222221110  00   1111111    0   1 23345555666554    899999


Q ss_pred             HHHHHHHHHHh
Q 024985          201 ISLVNSVILEN  211 (259)
Q Consensus       201 l~~i~~~~~~~  211 (259)
                      +..+.+.+.++
T Consensus       309 F~~v~~~Il~~  319 (327)
T 3ohm_A          309 FAAVKDTILQL  319 (327)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99988877654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.05  E-value=3.4e-10  Score=94.02  Aligned_cols=66  Identities=21%  Similarity=0.330  Sum_probs=42.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE   87 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~   87 (259)
                      ....+|+++|.||+|||||+|+|+|.....++. .+++|+.....  .  -+..+.++||||+........
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~--~--~~~~~~l~DtpG~~~~~~~~~  183 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWV--K--VGKELELLDTPGILWPKFEDE  183 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCE--E--ETTTEEEEECCCCCCSCCCCH
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEEE--E--eCCCEEEEECcCcCCCCCCCH
Confidence            345799999999999999999999987644432 34556555432  2  245789999999987665443

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.04  E-value=1.2e-09  Score=100.00  Aligned_cols=80  Identities=15%  Similarity=0.113  Sum_probs=42.2

Q ss_pred             cEEEEEeCCCCCCCCCC--hHHHHHHHHHHHhhcC-CCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEe
Q 024985           69 QVVNVIDTPGLFDSSAD--SEFVSKEIVKCIGMAK-DGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFT  145 (259)
Q Consensus        69 ~~~~liDTPG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~n  145 (259)
                      ..+.++|.||+......  .......+...+.... ....+++++++++..+...+  .++.+...-.  ...++++|+|
T Consensus       147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~--~l~la~~v~~--~g~rtI~VlT  222 (608)
T 3szr_A          147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTE--ALSMAQEVDP--EGDRTIGILT  222 (608)
T ss_dssp             CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCH--HHHHHHHHCS--SCCSEEEEEE
T ss_pred             CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHH--HHHHHHHHhh--cCCceEEEec
Confidence            35899999998753221  1122334444444322 33356677777653433222  4444444321  1248999999


Q ss_pred             CCCCCCC
Q 024985          146 GGNELED  152 (259)
Q Consensus       146 k~D~~~~  152 (259)
                      |+|.+..
T Consensus       223 K~Dlv~~  229 (608)
T 3szr_A          223 KPDLVDK  229 (608)
T ss_dssp             CGGGSSS
T ss_pred             chhhcCc
Confidence            9999865

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.03  E-value=4.5e-10  Score=97.14  Aligned_cols=92  Identities=15%  Similarity=0.089  Sum_probs=60.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC-----------------cEEEEEeCCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG-----------------QVVNVIDTPGL   79 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~~~~liDTPG~   79 (259)
                      ....+|+|+|++|||||||+|+|+|....... ..+++|..+....+. ..+                 ..+.+|||||+
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~-~~p~tTi~p~~G~v~-v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPA-NYPYATIDPEEAKVA-VPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTT-CCSSCCCCTTEEEEE-ECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccc-CCCceeecceeeeee-eCCcchhhhhhhcccccccCcceEEEecccc
Confidence            34679999999999999999999997642222 234455555444443 232                 35899999998


Q ss_pred             CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985           80 FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR  114 (259)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (259)
                      .......+.+...+...    ...+|++++|+|+.
T Consensus        96 ~~~~s~~e~L~~~fl~~----ir~~d~il~Vvd~~  126 (392)
T 1ni3_A           96 TKGASTGVGLGNAFLSH----VRAVDAIYQVVRAF  126 (392)
T ss_dssp             CCCCCSSSSSCHHHHHH----HTTCSEEEEEEECC
T ss_pred             ccCCcHHHHHHHHHHHH----HHHHHHHHHHHhcc
Confidence            86543333233333333    34679999999985

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.03  E-value=2.6e-09  Score=91.39  Aligned_cols=131  Identities=13%  Similarity=0.098  Sum_probs=75.1

Q ss_pred             eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC--------CHhHHHHHHHHHHHhccc--
Q 024985           66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF--------SEEGGAAIHSLESLFGKK--  135 (259)
Q Consensus        66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~--------~~~~~~~l~~l~~~~~~~--  135 (259)
                      .++..+.+|||+|-.           .+......++.+++++|||+|+++.-        ...-.+++.++..+....  
T Consensus       190 ~~~~~l~iwDt~GQe-----------~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~  258 (353)
T 1cip_A          190 FKDLHFKMFDVGGQR-----------SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF  258 (353)
T ss_dssp             ETTEEEEEEEECCSG-----------GGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             eCCeeEEEEeCCCch-----------hhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence            456789999999943           23333456788999999999998421        111233445555544322  


Q ss_pred             ccCeEEEEEeCCCCCCCCc--ccHHhhhCC----CCCchHHHHHH----Hc-----CCcEEEEeCCCcccccchhHHHHH
Q 024985          136 VFDYMIVVFTGGNELEDND--ETLEDYLGP----ECPKPLKEILQ----LC-----ENRRVLFDNKTKDAATRTEQVGKL  200 (259)
Q Consensus       136 ~~~~~ivV~nk~D~~~~~~--~~~~~~~~~----~~~~~l~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~i~eL  200 (259)
                      ...|+++|+||+|+....-  ..+..+...    .........+.    ..     ...+.++..++.+.    .++.++
T Consensus       259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~----~nV~~v  334 (353)
T 1cip_A          259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT----KNVQFV  334 (353)
T ss_dssp             TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH----HHHHHH
T ss_pred             cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc----hhHHHH
Confidence            2359999999999852200  111111100    00112222222    11     23456666776655    899999


Q ss_pred             HHHHHHHHHHh
Q 024985          201 ISLVNSVILEN  211 (259)
Q Consensus       201 l~~i~~~~~~~  211 (259)
                      +..+.+.+.+.
T Consensus       335 F~~v~~~i~~~  345 (353)
T 1cip_A          335 FDAVTDVIIKN  345 (353)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99887776543

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.98  E-value=1e-09  Score=87.87  Aligned_cols=25  Identities=16%  Similarity=0.323  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ..++|+++|.+|||||||++.++..
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4589999999999999999999854

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.92  E-value=3.2e-08  Score=83.85  Aligned_cols=75  Identities=11%  Similarity=0.088  Sum_probs=49.7

Q ss_pred             eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCC-------C-CCHhHHHHHHHHHHHhccc--
Q 024985           66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRN-------R-FSEEGGAAIHSLESLFGKK--  135 (259)
Q Consensus        66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~-------~-~~~~~~~~l~~l~~~~~~~--  135 (259)
                      .++..+.+|||+|-           +.+......++.+++++|||+|++.       . -...-.+.+.++.......  
T Consensus       158 ~~~v~l~iwDtaGQ-----------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~  226 (340)
T 4fid_A          158 VKDIPFHLIDVGGQ-----------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL  226 (340)
T ss_dssp             SSSCEEEEEECCSC-----------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred             eeeeeeccccCCCc-----------ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence            45678999999993           2455555678899999999999861       0 1111123444444444322  


Q ss_pred             ccCeEEEEEeCCCCCC
Q 024985          136 VFDYMIVVFTGGNELE  151 (259)
Q Consensus       136 ~~~~~ivV~nk~D~~~  151 (259)
                      ...|+++++||+|+..
T Consensus       227 ~~~piiLv~NK~DL~~  242 (340)
T 4fid_A          227 KGAVKLIFLNKMDLFE  242 (340)
T ss_dssp             TTSEEEEEEECHHHHH
T ss_pred             CCCeEEEEEECchhhh
Confidence            2359999999999863

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.88  E-value=7e-09  Score=91.01  Aligned_cols=122  Identities=18%  Similarity=0.171  Sum_probs=67.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC------CcccccCCC----------------------CC-cceeeE-E--EEEEe
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR------RAFKSKAGS----------------------SG-VTKTCE-M--QRTML   65 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~------~~~~~~~~~----------------------~~-~T~~~~-~--~~~~~   65 (259)
                      .+..|+++|++|+||||+++.|.+.      .+......+                      .+ .+.+.. .  ..+..
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~  177 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK  177 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence            3468999999999999999998752      211111100                      00 111110 0  00011


Q ss_pred             eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccccc-CeEEEEE
Q 024985           66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVF-DYMIVVF  144 (259)
Q Consensus        66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~-~~~ivV~  144 (259)
                      ..+..++||||||....   ...+...+.. + .....+|.++||+|+..+.  .   .+..+.. +... . ....+|+
T Consensus       178 ~~~~D~vIIDT~G~~~~---~~~l~~~l~~-i-~~~~~~d~vllVvda~~g~--~---~~~~~~~-~~~~-~~~i~gvVl  245 (432)
T 2v3c_C          178 FKKADVLIIDTAGRHKE---EKGLLEEMKQ-I-KEITNPDEIILVIDGTIGQ--Q---AGIQAKA-FKEA-VGEIGSIIV  245 (432)
T ss_dssp             TSSCSEEEEECCCSCSS---HHHHHHHHHH-T-TSSSCCSEEEEEEEGGGGG--G---HHHHHHH-HHTT-SCSCEEEEE
T ss_pred             hhCCCEEEEcCCCCccc---cHHHHHHHHH-H-HHHhcCcceeEEeeccccH--H---HHHHHHH-Hhhc-ccCCeEEEE
Confidence            24568999999997642   2333333322 1 2233689999999987442  1   2222222 2211 1 2488999


Q ss_pred             eCCCCCC
Q 024985          145 TGGNELE  151 (259)
Q Consensus       145 nk~D~~~  151 (259)
                      ||+|...
T Consensus       246 nK~D~~~  252 (432)
T 2v3c_C          246 TKLDGSA  252 (432)
T ss_dssp             ECSSSCS
T ss_pred             eCCCCcc
Confidence            9999763

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.84  E-value=2.6e-09  Score=87.72  Aligned_cols=60  Identities=28%  Similarity=0.429  Sum_probs=40.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA   84 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~   84 (259)
                      .+|+++|.+|+|||||+|+|++......+ ..+++|+.....    .-+..+.+|||||+.....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~-~~~g~T~~~~~~----~~~~~~~l~DtpG~~~~~~  159 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVG-AQPGITKGIQWF----SLENGVKILDTPGILYKNI  159 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEE----ECTTSCEEESSCEECCCCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccC-CCCCCccceEEE----EeCCCEEEEECCCcccCcC
Confidence            58999999999999999999998764433 234555544332    2235788999999997654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.83  E-value=2.4e-08  Score=87.35  Aligned_cols=124  Identities=15%  Similarity=0.140  Sum_probs=69.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCCCc-----------ceeeEEEEE--------------Ee-
Q 024985           18 AERTLVLVGRTGNGKSATGNSIL------GRRAFKSKAGSSGV-----------TKTCEMQRT--------------ML-   65 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~------~~~~~~~~~~~~~~-----------T~~~~~~~~--------------~~-   65 (259)
                      .+..|+++|++||||||++..|.      |..+..........           ......+..              .. 
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            46789999999999999999986      33322111110000           000000000              00 


Q ss_pred             -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEE
Q 024985           66 -KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVF  144 (259)
Q Consensus        66 -~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~  144 (259)
                       ..+..++||||||..... .......++.......  .+|.+++|+|+..+  .......+.+.+..+     +..||+
T Consensus       176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~-----~~gVIl  245 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQASP-----IGSVII  245 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHCS-----SEEEEE
T ss_pred             HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhcccC-----CcEEEE
Confidence             124579999999975411 1222334444433222  45899999999743  222344455554333     788999


Q ss_pred             eCCCCCC
Q 024985          145 TGGNELE  151 (259)
Q Consensus       145 nk~D~~~  151 (259)
                      ||+|...
T Consensus       246 TKlD~~a  252 (433)
T 3kl4_A          246 TKMDGTA  252 (433)
T ss_dssp             ECGGGCS
T ss_pred             ecccccc
Confidence            9999763

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.71  E-value=4.5e-08  Score=85.93  Aligned_cols=107  Identities=18%  Similarity=0.174  Sum_probs=58.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC-----------------CcccccCCCCCcceeeEEEEE----EeeC--CcEEEE
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGR-----------------RAFKSKAGSSGVTKTCEMQRT----MLKD--GQVVNV   73 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~-----------------~~~~~~~~~~~~T~~~~~~~~----~~~~--~~~~~l   73 (259)
                      .+...|+|+|++++|||||+|.|+|.                 ..+..+.....+|+.+-....    ....  ...+++
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl  144 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence            35578999999999999999999863                 222222222223332221110    0012  247999


Q ss_pred             EeCCCCCCCCCChHHHHHHHHHH-HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHH
Q 024985           74 IDTPGLFDSSADSEFVSKEIVKC-IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLES  130 (259)
Q Consensus        74 iDTPG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~  130 (259)
                      +||||+++...+ ......+... +..+    +++||-+  ...+...+...|..+.+
T Consensus       145 lDTeG~~~~~~~-~~~d~~ifal~~lLS----s~~IyN~--~~~i~~~~l~~L~~~~e  195 (447)
T 3q5d_A          145 MDTQGTFDSQST-LRDSATVFALSTMIS----SIQVYNL--SQNVQEDDLQHLQLFTE  195 (447)
T ss_dssp             EEEECCCSSHHH-HHHHHHHHHHHHHHC----SEEEEEE--SSSCCHHHHHHHHHHHH
T ss_pred             EcCCcccccccc-hhhhHHHHHHHHHHh----hHHHHhh--cccccHHHHHHHHHHHH
Confidence            999999875321 1111111111 1112    4555544  33677777777776655

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.66  E-value=9.9e-07  Score=73.84  Aligned_cols=146  Identities=15%  Similarity=0.124  Sum_probs=78.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc------ccccCCCC--Cc---------ceeeEEEEEE----------------
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA------FKSKAGSS--GV---------TKTCEMQRTM----------------   64 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~------~~~~~~~~--~~---------T~~~~~~~~~----------------   64 (259)
                      ....|+++|++||||||+++.|.+...      ...+....  +.         ...+.+....                
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            456899999999999999999974321      11111100  00         0001111000                


Q ss_pred             eeCCcEEEEEeCCCCCCCCCChHHHHHHH---HHHHh-hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeE
Q 024985           65 LKDGQVVNVIDTPGLFDSSADSEFVSKEI---VKCIG-MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYM  140 (259)
Q Consensus        65 ~~~~~~~~liDTPG~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~  140 (259)
                      ...+..+.++||+|.....   .....++   ...+. .....++.+++++|+..+.  .....+..+.+..+     ..
T Consensus       181 ~~~~~d~~llDt~G~~~~~---~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~-----~t  250 (304)
T 1rj9_A          181 KARGYDLLFVDTAGRLHTK---HNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----LT  250 (304)
T ss_dssp             HHHTCSEEEECCCCCCTTC---HHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----CS
T ss_pred             HhCCCCEEEecCCCCCCch---HHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcC-----Cc
Confidence            0113357899999976432   2222222   22222 2334678888999987442  22334444444334     67


Q ss_pred             EEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985          141 IVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       141 ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                      +|++||.|....             ...+-.+....+.++.++...
T Consensus       251 ~iivTh~d~~a~-------------gg~~l~i~~~~~~pi~~ig~G  283 (304)
T 1rj9_A          251 GVIVTKLDGTAK-------------GGVLIPIVRTLKVPIKFVGVG  283 (304)
T ss_dssp             EEEEECTTSSCC-------------CTTHHHHHHHHCCCEEEEECS
T ss_pred             EEEEECCccccc-------------ccHHHHHHHHHCCCeEEEeCC
Confidence            899999986532             223445566667777766654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.60  E-value=1e-06  Score=78.00  Aligned_cols=146  Identities=12%  Similarity=0.112  Sum_probs=79.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC------cccccCCCCCc------c-----eeeEEEEEE----------------
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR------AFKSKAGSSGV------T-----KTCEMQRTM----------------   64 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~------~~~~~~~~~~~------T-----~~~~~~~~~----------------   64 (259)
                      ....|+|+|++|||||||++.|.|..      +...+......      .     ..+.+....                
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a  371 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA  371 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence            45689999999999999999987532      11111111000      0     001111000                


Q ss_pred             eeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH---hhc-CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeE
Q 024985           65 LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI---GMA-KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYM  140 (259)
Q Consensus        65 ~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~  140 (259)
                      ...+..++||||+|....   ...+..++....   ... ...++-++||+|++.+  ......++.+.+.++     ..
T Consensus       372 ~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~-----it  441 (503)
T 2yhs_A          372 KARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----LT  441 (503)
T ss_dssp             HHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----CS
T ss_pred             HhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcC-----CC
Confidence            013456899999997642   233333333322   211 2236788999998733  222334444544444     56


Q ss_pred             EEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985          141 IVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       141 ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                      .+|+||.|....             -..+-.++...+.++.++...
T Consensus       442 gvIlTKLD~tak-------------gG~~lsi~~~~~~PI~fig~G  474 (503)
T 2yhs_A          442 GITLTKLDGTAK-------------GGVIFSVADQFGIPIRYIGVG  474 (503)
T ss_dssp             EEEEECGGGCSC-------------CTHHHHHHHHHCCCEEEEECS
T ss_pred             EEEEEcCCCccc-------------ccHHHHHHHHHCCCEEEEecC
Confidence            689999996422             223445666667676666554

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.60  E-value=1.6e-06  Score=73.31  Aligned_cols=145  Identities=14%  Similarity=0.107  Sum_probs=77.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccc------ccCCCC--Cc-------ce--eeEEEEEE---------------
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFK------SKAGSS--GV-------TK--TCEMQRTM---------------   64 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~------~~~~~~--~~-------T~--~~~~~~~~---------------   64 (259)
                      .++..|+++|++||||||+++.|.+.....      .+....  +.       ..  ...+....               
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~  206 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH  206 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence            346789999999999999999997542111      110000  00       00  00010000               


Q ss_pred             -eeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEE
Q 024985           65 -LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVV  143 (259)
Q Consensus        65 -~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV  143 (259)
                       ...+..+.++||+|.......   ...++.......  .+|-.++++|+..+.  .-...+..+.+..+     ...+|
T Consensus       207 ~~~~~~d~vliDtaG~~~~~~~---l~~eL~~i~ral--~~de~llvLDa~t~~--~~~~~~~~~~~~~~-----it~ii  274 (328)
T 3e70_C          207 AKARGIDVVLIDTAGRSETNRN---LMDEMKKIARVT--KPNLVIFVGDALAGN--AIVEQARQFNEAVK-----IDGII  274 (328)
T ss_dssp             HHHHTCSEEEEEECCSCCTTTC---HHHHHHHHHHHH--CCSEEEEEEEGGGTT--HHHHHHHHHHHHSC-----CCEEE
T ss_pred             HHhccchhhHHhhccchhHHHH---HHHHHHHHHHHh--cCCCCEEEEecHHHH--HHHHHHHHHHHhcC-----CCEEE
Confidence             012345789999998643222   233333222111  357889999986431  22233344433333     66899


Q ss_pred             EeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985          144 FTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       144 ~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                      +||.|....             -..+-.+....+.++.++...
T Consensus       275 lTKlD~~a~-------------~G~~l~~~~~~~~pi~~i~~G  304 (328)
T 3e70_C          275 LTKLDADAR-------------GGAALSISYVIDAPILFVGVG  304 (328)
T ss_dssp             EECGGGCSC-------------CHHHHHHHHHHTCCEEEEECS
T ss_pred             EeCcCCccc-------------hhHHHHHHHHHCCCEEEEeCC
Confidence            999997432             123334555667676666654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.55  E-value=8.8e-07  Score=73.92  Aligned_cols=123  Identities=14%  Similarity=0.113  Sum_probs=65.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh------CCCcccccCCCCCc-ce----------eeEEEE--------------EEe--
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL------GRRAFKSKAGSSGV-TK----------TCEMQR--------------TML--   65 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~------~~~~~~~~~~~~~~-T~----------~~~~~~--------------~~~--   65 (259)
                      ...|+++|++|+||||+++.|.      |..+.......... +.          ......              ...  
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            5688999999999999999886      33332222111100 00          000000              000  


Q ss_pred             eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEe
Q 024985           66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFT  145 (259)
Q Consensus        66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~n  145 (259)
                      ..+..++||||||.... .....+..++.....  ...+|.+++|+|+...  ......++.+.+    . .....+|+|
T Consensus       178 ~~~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~--~~~~d~vllVvda~~g--~~~~~~~~~~~~----~-~~i~gvVln  247 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGY-GEEAALLEEMKNIYE--AIKPDEVTLVIDASIG--QKAYDLASKFNQ----A-SKIGTIIIT  247 (297)
T ss_dssp             HTTCSEEEEECCCSCCT-TCHHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GGHHHHHHHHHH----T-CTTEEEEEE
T ss_pred             hCCCCEEEEeCCCCccc-ccHHHHHHHHHHHHH--HhcCCEEEEEeeCCch--HHHHHHHHHHHh----h-CCCCEEEEe
Confidence            14557999999997641 122223333322211  1146899999998732  222223333322    1 123778999


Q ss_pred             CCCCCC
Q 024985          146 GGNELE  151 (259)
Q Consensus       146 k~D~~~  151 (259)
                      |+|...
T Consensus       248 k~D~~~  253 (297)
T 1j8m_F          248 KMDGTA  253 (297)
T ss_dssp             CGGGCT
T ss_pred             CCCCCc
Confidence            999753

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.54  E-value=2e-06  Score=75.39  Aligned_cols=123  Identities=14%  Similarity=0.111  Sum_probs=66.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh-------CCCcccccCCCCCc-ce----------eeEEEE--------------EE
Q 024985           17 NAERTLVLVGRTGNGKSATGNSIL-------GRRAFKSKAGSSGV-TK----------TCEMQR--------------TM   64 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~-------~~~~~~~~~~~~~~-T~----------~~~~~~--------------~~   64 (259)
                      .++..|+++|.+|+||||+...|.       |..+......+... ..          ......              +.
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~  177 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK  177 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence            346789999999999999999887       65543322221110 00          000000              00


Q ss_pred             e--eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEE
Q 024985           65 L--KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIV  142 (259)
Q Consensus        65 ~--~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~iv  142 (259)
                      .  ..+..++||||||....   .......+.....  ...++.+++|+|+..+.  .....++.+..    .. ...-|
T Consensus       178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~--~~~p~~vllVvda~~g~--~~~~~~~~f~~----~l-~i~gv  245 (433)
T 2xxa_A          178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHA--SINPVETLFVVDAMTGQ--DAANTAKAFNE----AL-PLTGV  245 (433)
T ss_dssp             HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHH--HSCCSEEEEEEETTBCT--THHHHHHHHHH----HS-CCCCE
T ss_pred             HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHHH--hhcCcceeEEeecchhH--HHHHHHHHHhc----cC-CCeEE
Confidence            0  13568999999997542   1223333332211  22568899999987432  12222332222    11 12457


Q ss_pred             EEeCCCCCC
Q 024985          143 VFTGGNELE  151 (259)
Q Consensus       143 V~nk~D~~~  151 (259)
                      |+||+|...
T Consensus       246 VlnK~D~~~  254 (433)
T 2xxa_A          246 VLTKVDGDA  254 (433)
T ss_dssp             EEECTTSSS
T ss_pred             EEecCCCCc
Confidence            999999753

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=98.49  E-value=6.5e-07  Score=76.74  Aligned_cols=130  Identities=13%  Similarity=0.132  Sum_probs=69.0

Q ss_pred             eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC--------CHhHHHHHHHHHHHhccc--
Q 024985           66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF--------SEEGGAAIHSLESLFGKK--  135 (259)
Q Consensus        66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~--------~~~~~~~l~~l~~~~~~~--  135 (259)
                      .++..+.+|||||..           .+......++.+++++|||+|+++.-        ...-...+.++.......  
T Consensus       198 ~~~~~l~i~Dt~Gq~-----------~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~  266 (362)
T 1zcb_A          198 IKNVPFKMVDVGGQR-----------SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF  266 (362)
T ss_dssp             ETTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             eCCeEEEEEeccchh-----------hhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence            467899999999953           33344456778999999999998410        111123444444443321  


Q ss_pred             ccCeEEEEEeCCCCCCCC--cccHHhhhCCCC-C-chHHHHHHH-------c-----CCcEEEEeCCCcccccchhHHHH
Q 024985          136 VFDYMIVVFTGGNELEDN--DETLEDYLGPEC-P-KPLKEILQL-------C-----ENRRVLFDNKTKDAATRTEQVGK  199 (259)
Q Consensus       136 ~~~~~ivV~nk~D~~~~~--~~~~~~~~~~~~-~-~~l~~~~~~-------~-----~~~~~~~~~~~~~~~~~~~~i~e  199 (259)
                      ...|+++|+||+|+....  ...+..+..... . ....+....       .     ...++++..++.+.    .++.+
T Consensus       267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~----~nV~~  342 (362)
T 1zcb_A          267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT----ENIRL  342 (362)
T ss_dssp             TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH----HHHHH
T ss_pred             CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc----hhHHH
Confidence            235999999999986320  011111111000 0 111111111       1     22345566666554    89999


Q ss_pred             HHHHHHHHHHH
Q 024985          200 LISLVNSVILE  210 (259)
Q Consensus       200 Ll~~i~~~~~~  210 (259)
                      ++..+.+.+.+
T Consensus       343 vF~~v~~~i~~  353 (362)
T 1zcb_A          343 VFRDVKDTILH  353 (362)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99988776543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.36  E-value=1.6e-05  Score=66.51  Aligned_cols=147  Identities=15%  Similarity=0.140  Sum_probs=77.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCC------cccccCCCCCcc-----------eeeEEEEE----------------
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRR------AFKSKAGSSGVT-----------KTCEMQRT----------------   63 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~------~~~~~~~~~~~T-----------~~~~~~~~----------------   63 (259)
                      .....|+++|++|+||||++..|.+..      +...+.......           ........                
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~  181 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH  181 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence            345689999999999999999886422      111110000000           00000000                


Q ss_pred             EeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh----cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe
Q 024985           64 MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM----AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY  139 (259)
Q Consensus        64 ~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~  139 (259)
                      ....+..++++||||..   .....+..++......    ....+|.+++|+|+..+  .......+.+.+..     ..
T Consensus       182 a~~~~~dvvIiDtpg~~---~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~-----~i  251 (306)
T 1vma_A          182 ALARNKDVVIIDTAGRL---HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV-----NV  251 (306)
T ss_dssp             HHHTTCSEEEEEECCCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS-----CC
T ss_pred             HHhcCCCEEEEECCCch---hhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcC-----CC
Confidence            01134469999999963   2333344444333221    12357889999998622  11222222232211     24


Q ss_pred             EEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985          140 MIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       140 ~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                      .-+|+||.|....             -..+-.+....+.++.++...
T Consensus       252 ~gvVlTk~D~~~~-------------gG~~l~~~~~~~~Pi~~i~~G  285 (306)
T 1vma_A          252 TGIILTKLDGTAK-------------GGITLAIARELGIPIKFIGVG  285 (306)
T ss_dssp             CEEEEECGGGCSC-------------TTHHHHHHHHHCCCEEEEECS
T ss_pred             CEEEEeCCCCccc-------------hHHHHHHHHHHCCCEEEEeCC
Confidence            5678899997533             223445666667676666554

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.29  E-value=1.3e-05  Score=66.97  Aligned_cols=146  Identities=14%  Similarity=0.208  Sum_probs=77.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc------ccccCCCCCc-------c----eeeEEEEEE----------------
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA------FKSKAGSSGV-------T----KTCEMQRTM----------------   64 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~------~~~~~~~~~~-------T----~~~~~~~~~----------------   64 (259)
                      +...++++|++||||||+++.|.|...      ...+......       +    ..+.+....                
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~  178 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR  178 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence            456899999999999999999875421      1111111000       0    001111000                


Q ss_pred             -eeCCcEEEEEeCCCCCCCCCChHHHHHHHHH---HHh-hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe
Q 024985           65 -LKDGQVVNVIDTPGLFDSSADSEFVSKEIVK---CIG-MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY  139 (259)
Q Consensus        65 -~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~  139 (259)
                       ...+....++||.|+...   ......++.+   .+. .....++-+++|+|++.++....  .+..+.+..+     .
T Consensus       179 ~~~~~~d~~lldt~gl~~~---~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~g-----~  248 (302)
T 3b9q_A          179 GKEEGYDVVLCDTSGRLHT---NYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG-----I  248 (302)
T ss_dssp             HHHTTCSEEEECCCCCSSC---CHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----C
T ss_pred             HHHcCCcchHHhcCCCCcc---hhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhcC-----C
Confidence             011234679999998643   2222222221   122 22345777789999765544332  2333433233     5


Q ss_pred             EEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985          140 MIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       140 ~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                      .++++||.|....             -...-.+....+.++.++...
T Consensus       249 t~iiiThlD~~~~-------------~g~~l~~~~~~~~pi~~i~~G  282 (302)
T 3b9q_A          249 TGLILTKLDGSAR-------------GGCVVSVVEELGIPVKFIGVG  282 (302)
T ss_dssp             CEEEEECCSSCSC-------------THHHHHHHHHHCCCEEEEECS
T ss_pred             CEEEEeCCCCCCc-------------cChheehHHHHCCCEEEEeCC
Confidence            6789999886532             122334555556666666654

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=98.28  E-value=7.4e-06  Score=71.66  Aligned_cols=109  Identities=18%  Similarity=0.195  Sum_probs=63.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHh-------C----------CCcccccCCCCCcceeeEEEE----EEeeCC--cEEE
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSIL-------G----------RRAFKSKAGSSGVTKTCEMQR----TMLKDG--QVVN   72 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~-------~----------~~~~~~~~~~~~~T~~~~~~~----~~~~~~--~~~~   72 (259)
                      ..+...|.|+|++++|||+|+|.|+       +          ...|..+....++|+.+-...    ....++  ..+.
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl  143 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred             CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence            3456788899999999999999775       2          234444444455555443321    111123  4699


Q ss_pred             EEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHH
Q 024985           73 VIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLES  130 (259)
Q Consensus        73 liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~  130 (259)
                      ++||.|+++.......-..-+.-.+-.+    +++||-+.  ..+...+.+.|..+.+
T Consensus       144 llDTEG~~d~~~~~~~d~~ifaLa~LLS----S~~IyN~~--~~i~~~~L~~L~~~te  195 (457)
T 4ido_A          144 LMDTQGTFDSQSTLRDSATVFALSTMIS----SIQVYNLS--QNVQEDDLQHLQLFTE  195 (457)
T ss_dssp             EEEECCBTCTTCCHHHHHHHHHHHHHHC----SEEEEEEE--SSCCHHHHHHHHHHHH
T ss_pred             EEeccCCCCcccCccccHHHHHHHHHHh----hheeeccc--ccCCHHHHHHHHHHHH
Confidence            9999999887654322111121111222    45555554  3567777777766654

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.26  E-value=1.2e-05  Score=70.14  Aligned_cols=121  Identities=19%  Similarity=0.211  Sum_probs=63.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC------CCcccccCCCCCc-c----------eeeEEEEE--------------Ee-
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG------RRAFKSKAGSSGV-T----------KTCEMQRT--------------ML-   65 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~------~~~~~~~~~~~~~-T----------~~~~~~~~--------------~~-   65 (259)
                      +...|+++|++|+||||++..|.+      ..+...+...... .          ........              .. 
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~  176 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence            456889999999999999988753      2221111111100 0          00001100              00 


Q ss_pred             -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEE
Q 024985           66 -KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVF  144 (259)
Q Consensus        66 -~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~  144 (259)
                       ..+..++||||||....   ......++.......  .+|.+++|+|+...  ......++.+.+..     ...-||+
T Consensus       177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg--q~av~~a~~f~~~l-----~i~GVIl  244 (425)
T 2ffh_A          177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKV-----GVTGLVL  244 (425)
T ss_dssp             HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHT-----CCCEEEE
T ss_pred             HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch--HHHHHHHHHHHhcC-----CceEEEE
Confidence             13457999999997643   222333333222211  46888999998732  11122233222211     2466899


Q ss_pred             eCCCCC
Q 024985          145 TGGNEL  150 (259)
Q Consensus       145 nk~D~~  150 (259)
                      ||.|..
T Consensus       245 TKlD~~  250 (425)
T 2ffh_A          245 TKLDGD  250 (425)
T ss_dssp             ESGGGC
T ss_pred             eCcCCc
Confidence            999965

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.26  E-value=1.6e-05  Score=67.83  Aligned_cols=146  Identities=14%  Similarity=0.203  Sum_probs=77.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc------ccccCCCCCc-------c----eeeEEEEEEe---------------
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA------FKSKAGSSGV-------T----KTCEMQRTML---------------   65 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~------~~~~~~~~~~-------T----~~~~~~~~~~---------------   65 (259)
                      +...|+++|++||||||+++.|.+...      ...+......       +    ..+.+.....               
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~  235 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR  235 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence            456899999999999999999875321      1111111000       0    0011110000               


Q ss_pred             --eCCcEEEEEeCCCCCCCCCChHHHHHHHHH---HHh-hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCe
Q 024985           66 --KDGQVVNVIDTPGLFDSSADSEFVSKEIVK---CIG-MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDY  139 (259)
Q Consensus        66 --~~~~~~~liDTPG~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~  139 (259)
                        ..+....++||.|+....   .....++.+   .+. .....++-+++|+|++.++....  .+..+.+..+     .
T Consensus       236 ~~~~~~d~~lldt~Gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~g-----~  305 (359)
T 2og2_A          236 GKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG-----I  305 (359)
T ss_dssp             HHHTTCSEEEEECCCCSSCC---HHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----C
T ss_pred             HHhCCCHHHHHHhcCCChhh---hhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhcC-----C
Confidence              012346899999986432   222222221   111 22346777889999764444332  2333333233     6


Q ss_pred             EEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985          140 MIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       140 ~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                      .+|++||.|....             --..-.+....+.++.++...
T Consensus       306 t~iiiThlD~~~~-------------gG~~lsi~~~~~~pI~~ig~G  339 (359)
T 2og2_A          306 TGLILTKLDGSAR-------------GGCVVSVVEELGIPVKFIGVG  339 (359)
T ss_dssp             CEEEEESCTTCSC-------------THHHHHHHHHHCCCEEEEECS
T ss_pred             eEEEEecCccccc-------------ccHHHHHHHHhCCCEEEEeCC
Confidence            7789999886532             112334555566677666654

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.25  E-value=2.1e-05  Score=66.24  Aligned_cols=147  Identities=19%  Similarity=0.206  Sum_probs=76.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC------CCcccccCCCCCc--------------ceeeEEE-E-------------
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILG------RRAFKSKAGSSGV--------------TKTCEMQ-R-------------   62 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~------~~~~~~~~~~~~~--------------T~~~~~~-~-------------   62 (259)
                      .+...|+++|++|+||||++..|.+      ..+...+......              .....+. .             
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~  182 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD  182 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence            3456899999999999999988753      2221111111100              0001111 0             


Q ss_pred             -E--EeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH---HHhh-cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc
Q 024985           63 -T--MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK---CIGM-AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK  135 (259)
Q Consensus        63 -~--~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~  135 (259)
                       .  ....+..++||||||....   ......++..   .+.. ....+|.+++|+++..+  .   ..+..+.. +...
T Consensus       183 ~l~~~~~~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~---~~l~~~~~-~~~~  253 (320)
T 1zu4_A          183 AIKKAKEQNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--Q---NGVIQAEE-FSKV  253 (320)
T ss_dssp             HHHHHHHTTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--H---HHHHHHHH-HTTT
T ss_pred             HHHHHHhcCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--H---HHHHHHHH-Hhhc
Confidence             0  0013457999999996531   1222223322   2221 12347899999998722  2   23444443 3321


Q ss_pred             ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985          136 VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       136 ~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                       ....-+|+||.|....             ...+..+....+.++.++...
T Consensus       254 -~~i~GvVltk~d~~~~-------------~g~~~~~~~~~~~Pi~~i~~G  290 (320)
T 1zu4_A          254 -ADVSGIILTKMDSTSK-------------GGIGLAIKELLNIPIKMIGVG  290 (320)
T ss_dssp             -SCCCEEEEECGGGCSC-------------TTHHHHHHHHHCCCEEEEECS
T ss_pred             -CCCcEEEEeCCCCCCc-------------hhHHHHHHHHHCcCEEEEeCC
Confidence             1244588999996432             123445555667666665544

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.19  E-value=4e-07  Score=76.16  Aligned_cols=58  Identities=29%  Similarity=0.367  Sum_probs=32.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC------CcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS------GVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~~~liDTPG~~~   81 (259)
                      ...++|+|++|||||||+|+|+|...+.++.-..      .+|+.....  . ..  .-.++||||+..
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~--~-~~--~g~v~dtpg~~~  236 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI--H-TS--GGLVADTPGFSS  236 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE--E-ET--TEEEESSCSCSS
T ss_pred             CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHh--h-cC--CEEEecCCCccc
Confidence            4589999999999999999999876544332211      233322221  1 11  247899999864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.19  E-value=2.1e-06  Score=71.66  Aligned_cols=122  Identities=18%  Similarity=0.176  Sum_probs=62.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC-------cccccCCCCCccee-----------eEEEE----------EEeeCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR-------AFKSKAGSSGVTKT-----------CEMQR----------TMLKDGQ   69 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~-------~~~~~~~~~~~T~~-----------~~~~~----------~~~~~~~   69 (259)
                      ....|+++|++|+||||++..|.+..       +......+...+..           .....          +....+.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~  183 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY  183 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence            45689999999999999999885322       11111111000000           00000          0001345


Q ss_pred             EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 024985           70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNE  149 (259)
Q Consensus        70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~  149 (259)
                      .++|+||||....   ......++...+.  ...++.+++|+|++...  .   .+..+.+.+.  .....-+|+||.|.
T Consensus       184 dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~~--~---~~~~~~~~~~--~l~~~giVltk~D~  251 (296)
T 2px0_A          184 DHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAKY--E---DMKHIVKRFS--SVPVNQYIFTKIDE  251 (296)
T ss_dssp             SEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBCH--H---HHHHHTTTTS--SSCCCEEEEECTTT
T ss_pred             CEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCCH--H---HHHHHHHHHh--cCCCCEEEEeCCCc
Confidence            7999999998642   1222223333221  12357788999887331  1   1222223232  12245578899997


Q ss_pred             CC
Q 024985          150 LE  151 (259)
Q Consensus       150 ~~  151 (259)
                      ..
T Consensus       252 ~~  253 (296)
T 2px0_A          252 TT  253 (296)
T ss_dssp             CS
T ss_pred             cc
Confidence            63

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=98.08  E-value=1.4e-05  Score=69.13  Aligned_cols=73  Identities=12%  Similarity=0.129  Sum_probs=48.8

Q ss_pred             eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC---------CCHhHHHHHHHHHHHhccc-
Q 024985           66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR---------FSEEGGAAIHSLESLFGKK-  135 (259)
Q Consensus        66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~---------~~~~~~~~l~~l~~~~~~~-  135 (259)
                      .++..+.+|||+|-.           .+......++.+++++|||+|+++-         ... -..+..++..+.... 
T Consensus       214 ~~~v~l~iwDtaGQe-----------~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns-~~e~~~~~~~i~~~~~  281 (402)
T 1azs_C          214 VDKVNFHMFDVGGQR-----------DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNR-LQEALNLFKSIWNNRW  281 (402)
T ss_dssp             ETTEEEEEEEECCSG-----------GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBH-HHHHHHHHHHHHTCTT
T ss_pred             cCCccceecccchhh-----------hhhhhhHhhccCCCEEEEEEECcccccccccccccch-HHHHHHHHHHHHhccc
Confidence            467899999999953           2333445678899999999999840         111 123444555444321 


Q ss_pred             -ccCeEEEEEeCCCCC
Q 024985          136 -VFDYMIVVFTGGNEL  150 (259)
Q Consensus       136 -~~~~~ivV~nk~D~~  150 (259)
                       ...|++||+||+|+.
T Consensus       282 ~~~~piiLvgNK~DL~  297 (402)
T 1azs_C          282 LRTISVILFLNKQDLL  297 (402)
T ss_dssp             CSSCCEEEEEECHHHH
T ss_pred             CCCCeEEEEEEChhhh
Confidence             234999999999975

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.03  E-value=3.6e-05  Score=64.10  Aligned_cols=143  Identities=17%  Similarity=0.182  Sum_probs=72.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC------CcccccCCCCC-cce----------eeEEEE--------------EEe-
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR------RAFKSKAGSSG-VTK----------TCEMQR--------------TML-   65 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~------~~~~~~~~~~~-~T~----------~~~~~~--------------~~~-   65 (259)
                      ....|+++|++|+||||++..|.+.      .+...+..... ...          ......              ... 
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~  176 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999887532      21111111100 000          000000              000 


Q ss_pred             -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEE
Q 024985           66 -KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVF  144 (259)
Q Consensus        66 -~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~  144 (259)
                       ..+..++|+||||....   ......++.......  .++.+++|+|+...  ..   .++.+.. +... ....-+|+
T Consensus       177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~~--~~---~~~~~~~-~~~~-~~i~givl  244 (295)
T 1ls1_A          177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QE---ALSVARA-FDEK-VGVTGLVL  244 (295)
T ss_dssp             HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HH---HHHHHHH-HHHH-TCCCEEEE
T ss_pred             HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCCc--HH---HHHHHHH-Hhhc-CCCCEEEE
Confidence             13457999999986532   122233333332222  35788899998622  22   2333332 2211 12456899


Q ss_pred             eCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeC
Q 024985          145 TGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDN  185 (259)
Q Consensus       145 nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  185 (259)
                      ||.|....             -...-.+....+.++.++..
T Consensus       245 nk~d~~~~-------------~g~~~~~~~~~~~pi~~i~~  272 (295)
T 1ls1_A          245 TKLDGDAR-------------GGAALSARHVTGKPIYFAGV  272 (295)
T ss_dssp             ECGGGCSS-------------CHHHHHHHHHHCCCEEEEC-
T ss_pred             ECCCCCcc-------------HHHHHHHHHHHCcCEEEEeC
Confidence            99996533             11233455555666655544

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=98.03  E-value=1.6e-05  Score=67.80  Aligned_cols=72  Identities=10%  Similarity=0.091  Sum_probs=44.9

Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCC-------C-CCHhHHHHHHHHHHHhccc--cc
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRN-------R-FSEEGGAAIHSLESLFGKK--VF  137 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~-------~-~~~~~~~~l~~l~~~~~~~--~~  137 (259)
                      ...+.+|||+|-..           +......++++++++|||+|++.       . -...-..+..++..+....  ..
T Consensus       182 ~v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~  250 (354)
T 2xtz_A          182 GEVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  250 (354)
T ss_dssp             --EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred             ceeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence            45899999999542           23334567889999999999860       1 1111123444444433221  23


Q ss_pred             CeEEEEEeCCCCC
Q 024985          138 DYMIVVFTGGNEL  150 (259)
Q Consensus       138 ~~~ivV~nk~D~~  150 (259)
                      .|+++|+||+|+.
T Consensus       251 ~piiLvgNK~DL~  263 (354)
T 2xtz_A          251 TSFMLFLNKFDIF  263 (354)
T ss_dssp             CEEEEEEECHHHH
T ss_pred             CeEEEEEECcchh
Confidence            5999999999975

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.02  E-value=2.7e-06  Score=72.60  Aligned_cols=29  Identities=31%  Similarity=0.542  Sum_probs=24.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc-cccc
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRA-FKSK   48 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~-~~~~   48 (259)
                      ..++|+|++|||||||+|.|+|... +.++
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G  245 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQNEILTN  245 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred             CEEEEECCCCccHHHHHHHHhccccccccC
Confidence            4799999999999999999999765 4433

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.98  E-value=9.3e-06  Score=67.89  Aligned_cols=58  Identities=22%  Similarity=0.212  Sum_probs=35.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC------CcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS------GVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~~~liDTPG~~~   81 (259)
                      ...++++|++|||||||+|+|. ...+.++.-..      .+|+.....  . ... .-.++||||+..
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~--~-~~~-~g~v~d~pg~~~  228 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLI--P-FGK-GSFVGDTPGFSK  228 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEE--E-ETT-TEEEESSCCCSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEE--E-cCC-CcEEEECcCcCc
Confidence            3578999999999999999999 65433332211      122222211  1 112 236899999863

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.94  E-value=7.3e-06  Score=68.48  Aligned_cols=59  Identities=27%  Similarity=0.282  Sum_probs=35.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCC------CcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSS------GVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~~~liDTPG~~~   81 (259)
                      ...++++|++|||||||+|.|.|...+..+.-..      .+|......  . .. ..-.++||||+..
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~--~-~~-~~g~v~q~p~~~~  233 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLL--K-FD-FGGYVVDTPGFAN  233 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEE--E-CT-TSCEEESSCSSTT
T ss_pred             CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEE--E-cC-CCCEEEECcCCCc
Confidence            3578999999999999999999877544432111      122222111  1 11 1236899999764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.70  E-value=4.5e-05  Score=63.05  Aligned_cols=86  Identities=9%  Similarity=0.103  Sum_probs=50.8

Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR  179 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (259)
                      ....+|++++|+|+..+.+.....+-++    ++   .+|.++|+||+|+.+.  ...+.         +....+..+..
T Consensus        20 ~l~~aDvVl~VvDAr~p~~~~~~~l~~~----l~---~kp~ilVlNK~DL~~~--~~~~~---------~~~~~~~~g~~   81 (282)
T 1puj_A           20 KLKLIDIVYELVDARIPMSSRNPMIEDI----LK---NKPRIMLLNKADKADA--AVTQQ---------WKEHFENQGIR   81 (282)
T ss_dssp             HGGGCSEEEEEEETTSTTTTSCHHHHHH----CS---SSCEEEEEECGGGSCH--HHHHH---------HHHHHHTTTCC
T ss_pred             HHhhCCEEEEEEeCCCCCccCCHHHHHH----HC---CCCEEEEEECcccCCH--HHHHH---------HHHHHHhcCCc
Confidence            3445699999999986665543222222    22   3599999999999853  22222         11223333444


Q ss_pred             EEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          180 RVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ++.+++...      .++.+|++.+.++++
T Consensus        82 ~i~iSA~~~------~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           82 SLSINSVNG------QGLNQIVPASKEILQ  105 (282)
T ss_dssp             EEECCTTTC------TTGGGHHHHHHHHHH
T ss_pred             EEEEECCCc------ccHHHHHHHHHHHHH
Confidence            445554422      567777777776654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.67  E-value=4.3e-06  Score=65.35  Aligned_cols=26  Identities=38%  Similarity=0.710  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ....|+|+|++|||||||++.|++..
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            34578999999999999999998654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.60  E-value=0.00012  Score=62.74  Aligned_cols=101  Identities=8%  Similarity=0.089  Sum_probs=58.9

Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985           92 EIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE  171 (259)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (259)
                      .+.+.+......+|++++|+|+++.    +..+...+.+.++   .+|+++|+||+|+.+.  ....+.+.    ..++.
T Consensus        58 ~f~~~l~~i~~~~~~il~VvD~~d~----~~~~~~~l~~~~~---~~p~ilV~NK~DL~~~--~~~~~~~~----~~l~~  124 (368)
T 3h2y_A           58 DFLRILNGIGKSDALVVKIVDIFDF----NGSWLPGLHRFVG---NNKVLLVGNKADLIPK--SVKHDKVK----HWMRY  124 (368)
T ss_dssp             HHHHHHHHHHHSCCEEEEEEETTSH----HHHCCTTHHHHSS---SSCEEEEEECGGGSCT--TSCHHHHH----HHHHH
T ss_pred             HHHHHHHHHhccCcEEEEEEECCCC----cccHHHHHHHHhC---CCcEEEEEEChhcCCc--ccCHHHHH----HHHHH
Confidence            4444444455567899999999732    2334445555444   3599999999999854  21111111    12334


Q ss_pred             HHHHcCCc-EEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          172 ILQLCENR-RVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       172 ~~~~~~~~-~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ..+..+.+ ..++..++..+    .|+.+|++.+.++..
T Consensus       125 ~~~~~g~~~~~v~~iSA~~g----~gi~~L~~~l~~~~~  159 (368)
T 3h2y_A          125 SAKQLGLKPEDVFLISAAKG----QGIAELADAIEYYRG  159 (368)
T ss_dssp             HHHHTTCCCSEEEECCTTTC----TTHHHHHHHHHHHHT
T ss_pred             HHHHcCCCcccEEEEeCCCC----cCHHHHHhhhhhhcc
Confidence            45555542 12333333333    789999999887653

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.60  E-value=0.00059  Score=53.00  Aligned_cols=69  Identities=7%  Similarity=0.015  Sum_probs=41.9

Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG  147 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~  147 (259)
                      ...++|||||+....         .....+..    +|.+|+++..+ ..+..-..+++.+..........++.+|+|++
T Consensus        75 ~yD~viiD~~~~~~~---------~~~~~l~~----ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~  140 (206)
T 4dzz_A           75 DYDFAIVDGAGSLSV---------ITSAAVMV----SDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK  140 (206)
T ss_dssp             TSSEEEEECCSSSSH---------HHHHHHHH----CSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred             CCCEEEEECCCCCCH---------HHHHHHHH----CCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            357999999985421         12222222    48999999887 33344456666666532111223668999999


Q ss_pred             CCC
Q 024985          148 NEL  150 (259)
Q Consensus       148 D~~  150 (259)
                      |..
T Consensus       141 ~~~  143 (206)
T 4dzz_A          141 IEM  143 (206)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            843

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.56  E-value=4.8e-05  Score=63.50  Aligned_cols=66  Identities=12%  Similarity=-0.032  Sum_probs=41.6

Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHhH-HHHHHHHHHHhcccccCeEEEEEeC
Q 024985           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF-SEEG-GAAIHSLESLFGKKVFDYMIVVFTG  146 (259)
Q Consensus        69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk  146 (259)
                      ..+.+|||  ....           ......++.++|++|+|+|++++. +... ..++..+.. .    ..|+++|+||
T Consensus        63 ~~~~iwD~--qer~-----------~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-~----~~piilv~NK  124 (301)
T 1u0l_A           63 GSGVIENV--LHRK-----------NLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-N----ELETVMVINK  124 (301)
T ss_dssp             SSEEEEEE--CCCS-----------CEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-T----TCEEEEEECC
T ss_pred             CeEEEEEE--cccc-----------ceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-C----CCCEEEEEeH
Confidence            37899999  2211           111124577899999999998554 3332 233433332 1    3499999999


Q ss_pred             CCCCCC
Q 024985          147 GNELED  152 (259)
Q Consensus       147 ~D~~~~  152 (259)
                      +|+.+.
T Consensus       125 ~DL~~~  130 (301)
T 1u0l_A          125 MDLYDE  130 (301)
T ss_dssp             GGGCCH
T ss_pred             HHcCCc
Confidence            998754

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.51  E-value=3.2e-05  Score=60.41  Aligned_cols=25  Identities=32%  Similarity=0.515  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ...++|+|++|||||||++.|++..
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3579999999999999999998743

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.47  E-value=5.2e-05  Score=58.22  Aligned_cols=24  Identities=33%  Similarity=0.670  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ..++|+|++|||||||++.|.+..
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            479999999999999999998753

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.41  E-value=6.2e-05  Score=57.81  Aligned_cols=23  Identities=26%  Similarity=0.523  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 024985           21 TLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      +++|+|++|+|||||++.|+|..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998764

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.40  E-value=0.0001  Score=59.19  Aligned_cols=26  Identities=27%  Similarity=0.279  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|||||||++.|.|...
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            35799999999999999999998764

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.38  E-value=2.6e-05  Score=60.31  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 024985           21 TLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~   42 (259)
                      -|+|+||+|||||||++.|+..
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            3889999999999999999754

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.35  E-value=8.8e-05  Score=58.23  Aligned_cols=26  Identities=31%  Similarity=0.379  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ....++|+|++|||||||++.|.|..
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34578999999999999999998764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.34  E-value=0.00012  Score=58.42  Aligned_cols=25  Identities=24%  Similarity=0.235  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      -.++|+|++|||||||++.|.|-..
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4789999999999999999998764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.33  E-value=9.4e-05  Score=58.77  Aligned_cols=27  Identities=19%  Similarity=0.313  Sum_probs=23.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      ....++|+|++|||||||++.|+|...
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            446799999999999999999988653

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.32  E-value=0.00018  Score=58.11  Aligned_cols=27  Identities=19%  Similarity=0.236  Sum_probs=23.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +.-.++|+|++|||||||++.|.|...
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            345799999999999999999998764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.31  E-value=0.00015  Score=55.82  Aligned_cols=25  Identities=28%  Similarity=0.498  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +...|+|+|++|||||||++.|.+.
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            3457999999999999999999876

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.31  E-value=0.00011  Score=57.20  Aligned_cols=24  Identities=13%  Similarity=0.354  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ...|+|+|++|||||||++.|.+.
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhh
Confidence            357999999999999999999875

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.30  E-value=8.8e-05  Score=58.84  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ...++|+|++|||||||++.|.|..
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3578999999999999999998754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.30  E-value=0.00015  Score=58.35  Aligned_cols=26  Identities=27%  Similarity=0.417  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|||||||++.|+|...
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            35789999999999999999998864

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.30  E-value=0.00015  Score=62.27  Aligned_cols=100  Identities=8%  Similarity=-0.023  Sum_probs=56.5

Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985           93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI  172 (259)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (259)
                      +.+.+......++++++|+|+.+..+    .+...+.+.++   .+|+++|+||+|+++.  ....+.+.    ..++..
T Consensus        61 f~~~L~~~~~~~~lil~VvD~~d~~~----s~~~~l~~~l~---~~piilV~NK~DLl~~--~~~~~~~~----~~l~~~  127 (369)
T 3ec1_A           61 FLSMLHRIGESKALVVNIVDIFDFNG----SFIPGLPRFAA---DNPILLVGNKADLLPR--SVKYPKLL----RWMRRM  127 (369)
T ss_dssp             HHHHHHHHHHHCCEEEEEEETTCSGG----GCCSSHHHHCT---TSCEEEEEECGGGSCT--TCCHHHHH----HHHHHH
T ss_pred             HHHHHHHhhccCcEEEEEEECCCCCC----chhhHHHHHhC---CCCEEEEEEChhcCCC--ccCHHHHH----HHHHHH
Confidence            44444444455689999999984332    23333444343   3599999999999865  21111111    123344


Q ss_pred             HHHcCCc-EEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          173 LQLCENR-RVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       173 ~~~~~~~-~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .+..+.+ ..++..++..    ..++.+|++.+.++..
T Consensus       128 ~~~~g~~~~~v~~iSA~~----g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          128 AEELGLCPVDVCLVSAAK----GIGMAKVMEAINRYRE  161 (369)
T ss_dssp             HHTTTCCCSEEEECBTTT----TBTHHHHHHHHHHHHT
T ss_pred             HHHcCCCcccEEEEECCC----CCCHHHHHHHHHhhcc
Confidence            5555542 1223333332    2789999999887664

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.27  E-value=0.00016  Score=58.28  Aligned_cols=25  Identities=40%  Similarity=0.387  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      -.++++|++|||||||++.|.|-..
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4789999999999999999998764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.27  E-value=0.00017  Score=59.05  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|||||||++.|.|-..
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            35789999999999999999998764

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.27  E-value=0.00012  Score=57.43  Aligned_cols=27  Identities=26%  Similarity=0.420  Sum_probs=23.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      .....|+|+|++|||||||++.|.+..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999998654

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.27  E-value=0.00018  Score=58.69  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|||||||++.|.|-..
T Consensus        32 Ge~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           32 GDVISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34789999999999999999998764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.26  E-value=0.00016  Score=58.51  Aligned_cols=26  Identities=31%  Similarity=0.387  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|||||||++.|+|...
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34789999999999999999998764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.25  E-value=0.00017  Score=57.66  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|||||||++.|+|...
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            34789999999999999999998764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.25  E-value=0.00017  Score=59.36  Aligned_cols=26  Identities=23%  Similarity=0.268  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|||||||++.|.|-..
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~   59 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNGILK   59 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            35789999999999999999998764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.25  E-value=0.00016  Score=57.16  Aligned_cols=25  Identities=20%  Similarity=0.199  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      -.++|+|++|||||||++.|+|...
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4689999999999999999998764

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.24  E-value=0.0002  Score=58.45  Aligned_cols=26  Identities=23%  Similarity=0.310  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|||||||++.|.|...
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence            34789999999999999999998764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.24  E-value=0.00017  Score=58.69  Aligned_cols=26  Identities=31%  Similarity=0.413  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|||||||++.|.|-..
T Consensus        33 Ge~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           33 GDVTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34789999999999999999998764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.23  E-value=9e-05  Score=59.17  Aligned_cols=25  Identities=32%  Similarity=0.521  Sum_probs=16.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh-CCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL-GRR   43 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~-~~~   43 (259)
                      ...|+|+|++|||||||++.|. +..
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4579999999999999999999 764

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.22  E-value=0.00022  Score=58.03  Aligned_cols=26  Identities=27%  Similarity=0.279  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|||||||++.|+|...
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34789999999999999999998764

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.22  E-value=0.00019  Score=57.81  Aligned_cols=26  Identities=31%  Similarity=0.493  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|||||||++.|.|...
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34789999999999999999998764

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.21  E-value=0.00023  Score=58.47  Aligned_cols=26  Identities=27%  Similarity=0.385  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|||||||++.|+|...
T Consensus        45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           45 GKVTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34789999999999999999998764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.21  E-value=0.00016  Score=56.40  Aligned_cols=24  Identities=25%  Similarity=0.587  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ....|+|+|++||||||+++.|.+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999864

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.20  E-value=0.00019  Score=56.39  Aligned_cols=26  Identities=23%  Similarity=0.392  Sum_probs=22.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ....|+|+|++|||||||++.|.+..
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            44679999999999999999998764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.18  E-value=0.00016  Score=60.35  Aligned_cols=27  Identities=33%  Similarity=0.415  Sum_probs=23.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-.++|+|++|||||||++.|+|...+
T Consensus        80 Ge~vaivG~sGsGKSTLl~ll~gl~~p  106 (306)
T 3nh6_A           80 GQTLALVGPSGAGKSTILRLLFRFYDI  106 (306)
T ss_dssp             TCEEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred             CCEEEEECCCCchHHHHHHHHHcCCCC
Confidence            458999999999999999999987643

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.18  E-value=0.00022  Score=58.83  Aligned_cols=27  Identities=22%  Similarity=0.256  Sum_probs=23.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-.++|+|++|||||||++.|+|...+
T Consensus        47 Ge~~~liG~NGsGKSTLlk~l~Gl~~p   73 (279)
T 2ihy_A           47 GDKWILYGLNGAGKTTLLNILNAYEPA   73 (279)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            347899999999999999999987643

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.16  E-value=0.00025  Score=53.89  Aligned_cols=23  Identities=30%  Similarity=0.492  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      .-.++++|++|||||||++.+++
T Consensus         9 gei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CEEEEEECCCCCCHHHHHHHHcc
Confidence            35789999999999999998654

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.16  E-value=0.00027  Score=57.85  Aligned_cols=26  Identities=31%  Similarity=0.429  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|||||||++.|.|-..
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            34789999999999999999998764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.16  E-value=0.00019  Score=56.33  Aligned_cols=25  Identities=16%  Similarity=0.283  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +...|+|+|++|||||||++.|.+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            4468999999999999999999875

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.16  E-value=0.00023  Score=57.76  Aligned_cols=25  Identities=32%  Similarity=0.510  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      -.++|+|++|||||||++.|.|...
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4789999999999999999998764

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.16  E-value=0.0002  Score=58.46  Aligned_cols=26  Identities=31%  Similarity=0.400  Sum_probs=22.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      +...++|+|++|||||||++.|++..
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHhC
Confidence            45689999999999999999998754

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.15  E-value=0.00021  Score=53.68  Aligned_cols=25  Identities=24%  Similarity=0.309  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      .-.++|+|+.|||||||++.|.|..
T Consensus        33 Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhC
Confidence            3579999999999999999998866

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.14  E-value=0.00026  Score=57.73  Aligned_cols=26  Identities=35%  Similarity=0.416  Sum_probs=22.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|||||||++.|.|...
T Consensus        46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   71 (260)
T 2ghi_A           46 GTTCALVGHTGSGKSTIAKLLYRFYD   71 (260)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCC
Confidence            35799999999999999999998753

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.12  E-value=0.00028  Score=53.53  Aligned_cols=24  Identities=33%  Similarity=0.545  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ....|+|+|++||||||+.+.|.+
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            346899999999999999999864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.12  E-value=0.00024  Score=57.54  Aligned_cols=24  Identities=33%  Similarity=0.566  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      .-.++|+|++|||||||++.|+|.
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            347899999999999999999996

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.12  E-value=0.00025  Score=57.47  Aligned_cols=25  Identities=36%  Similarity=0.470  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      -.++|+|++|||||||++.|.|...
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            4789999999999999999998764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.12  E-value=0.00029  Score=57.65  Aligned_cols=24  Identities=29%  Similarity=0.580  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      .-.++|+|++|||||||++.|+|.
T Consensus        46 Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           46 GEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            347899999999999999999997

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.08  E-value=0.00031  Score=57.34  Aligned_cols=24  Identities=25%  Similarity=0.493  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      -.++|+|++|||||||++.|.|..
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999999876

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.07  E-value=0.00024  Score=59.20  Aligned_cols=25  Identities=28%  Similarity=0.421  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +.-.++|+|++|+|||||++.|+|.
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhh
Confidence            3457999999999999999999864

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.06  E-value=0.00032  Score=56.82  Aligned_cols=28  Identities=18%  Similarity=0.317  Sum_probs=23.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh---CCCc
Q 024985           17 NAERTLVLVGRTGNGKSATGNSIL---GRRA   44 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~---~~~~   44 (259)
                      .....|+|+|++||||||+++.|.   |...
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~   55 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL   55 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence            345689999999999999999998   6543

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.05  E-value=0.00038  Score=57.70  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|||||||++.|+|...
T Consensus        64 Ge~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           64 GQLLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            35789999999999999999998764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.05  E-value=0.00029  Score=54.87  Aligned_cols=25  Identities=28%  Similarity=0.413  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ...|+|+|++||||||+++.|.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3579999999999999999998764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.04  E-value=0.00036  Score=56.17  Aligned_cols=26  Identities=27%  Similarity=0.413  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh---CCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL---GRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~---~~~~   44 (259)
                      +..|+|+|++|||||||++.|.   |...
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~   55 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH   55 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence            4689999999999999999999   7654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.04  E-value=0.0002  Score=56.36  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKS   47 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~   47 (259)
                      -.++|+|++|||||||++.|.|. .+..
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl-~p~~   49 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQS   49 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH-HHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC-CCcC
Confidence            46899999999999999999987 5433

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.03  E-value=0.00041  Score=59.09  Aligned_cols=27  Identities=22%  Similarity=0.379  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFK   46 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~   46 (259)
                      -.++|+|++|||||||++.|.|-..+.
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~~p~   57 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFEQPD   57 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSCCS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCCCC
Confidence            478999999999999999999976533

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.02  E-value=0.00037  Score=54.46  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ....|+|+|++||||||+++.|...
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4467999999999999999999753

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.02  E-value=0.001  Score=55.44  Aligned_cols=48  Identities=17%  Similarity=0.202  Sum_probs=32.9

Q ss_pred             cCCCccEEEEEEeCCCC-CCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          100 AKDGIHAVLLVFSVRNR-FSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      .+..+|++++|+|++++ ++... ..++..+.. .    ..|+++|+||+|+.++
T Consensus        76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-~----~~~~ilV~NK~DL~~~  125 (302)
T 2yv5_A           76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-F----KVEPVIVFNKIDLLNE  125 (302)
T ss_dssp             EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-T----TCEEEEEECCGGGCCH
T ss_pred             HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-C----CCCEEEEEEcccCCCc
Confidence            56788999999999855 34432 233433333 2    2499999999998754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.00  E-value=0.00047  Score=58.86  Aligned_cols=27  Identities=19%  Similarity=0.153  Sum_probs=23.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-.++|+|++|||||||++.|.|-..+
T Consensus        54 Gei~~IiGpnGaGKSTLlr~i~GL~~p   80 (366)
T 3tui_C           54 GQIYGVIGASGAGKSTLIRCVNLLERP   80 (366)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CCEEEEEcCCCchHHHHHHHHhcCCCC
Confidence            357899999999999999999987653

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.00  E-value=0.00079  Score=52.85  Aligned_cols=66  Identities=15%  Similarity=0.056  Sum_probs=38.8

Q ss_pred             CcEEEEEeCCCC-CCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEe
Q 024985           68 GQVVNVIDTPGL-FDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFT  145 (259)
Q Consensus        68 ~~~~~liDTPG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~n  145 (259)
                      ...+++||||+. ...         .....+.    .+|.+|+++..+ ..+-. ...+++.+....    ..++.+|+|
T Consensus        67 ~yD~viiD~p~~~~~~---------~~~~~l~----~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~----~~~~~vv~N  128 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE---------DLEALAD----GCDLLVIPSTPD-ALALDALMLTIETLQKLG----NNRFRILLT  128 (209)
T ss_dssp             GCSEEEEEEECCCSSS---------HHHHHHH----TSSEEEEEECSS-HHHHHHHHHHHHHHHHTC----SSSEEEEEC
T ss_pred             cCCEEEEeCCCCcCcH---------HHHHHHH----HCCEEEEEecCC-chhHHHHHHHHHHHHhcc----CCCEEEEEE
Confidence            347999999986 321         1222222    348999998876 22221 234445554421    236889999


Q ss_pred             CCCCCC
Q 024985          146 GGNELE  151 (259)
Q Consensus       146 k~D~~~  151 (259)
                      +.|...
T Consensus       129 ~~~~~~  134 (209)
T 3cwq_A          129 IIPPYP  134 (209)
T ss_dssp             SBCCTT
T ss_pred             ecCCcc
Confidence            998553

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.97  E-value=0.00043  Score=58.92  Aligned_cols=27  Identities=26%  Similarity=0.326  Sum_probs=23.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-.++|+|++|||||||++.|.|-..+
T Consensus        41 Ge~~~llGpnGsGKSTLLr~iaGl~~p   67 (355)
T 1z47_A           41 GEMVGLLGPSGSGKTTILRLIAGLERP   67 (355)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            347899999999999999999987653

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=96.96  E-value=0.0018  Score=50.78  Aligned_cols=99  Identities=7%  Similarity=-0.020  Sum_probs=55.1

Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc---ccCeEEEEEeCC-CCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK---VFDYMIVVFTGG-NELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~---~~~~~ivV~nk~-D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      ..++..+|++|||+|.+++-....+.-|..|..++..+   ...|++|..||. |+...  .+..++... .  .+.   
T Consensus       120 r~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e~-L--~L~---  191 (227)
T 3l82_B          120 QKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHE-L--HLN---  191 (227)
T ss_dssp             HHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHHH-T--TGG---
T ss_pred             HHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHHH-c--CCc---
Confidence            34455669999999997432112333333344434332   234899999996 55322  222222210 0  111   


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                       .....+++...++.++    +|+.|-++++.+.+.
T Consensus       192 -~l~R~W~Iq~csA~TG----eGL~EGLdWL~~~l~  222 (227)
T 3l82_B          192 -LLNHPWLVQDTEAETL----TGFLNGIEWILEEVE  222 (227)
T ss_dssp             -GGCSCEEEEEEETTTC----TTHHHHHHHHTTTTT
T ss_pred             -CCCCCEEEEEeECCCC----cCHHHHHHHHHHHHH
Confidence             1234566666776665    899999999876553

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.96  E-value=0.00053  Score=58.86  Aligned_cols=26  Identities=35%  Similarity=0.460  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      -.++|+|++|||||||++.|.|-..+
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~~p   55 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLETI   55 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCCCC
Confidence            47899999999999999999997753

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.96  E-value=0.00054  Score=58.53  Aligned_cols=27  Identities=30%  Similarity=0.357  Sum_probs=23.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-.++|+|++|||||||++.|.|-..+
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~~p   55 (362)
T 2it1_A           29 GEFMALLGPSGSGKSTLLYTIAGIYKP   55 (362)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCCCC
Confidence            347899999999999999999987653

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.95  E-value=0.00041  Score=54.02  Aligned_cols=26  Identities=19%  Similarity=0.233  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ....|+|+|++||||||+.+.|.+.-
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999997543

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.95  E-value=0.00053  Score=58.49  Aligned_cols=27  Identities=26%  Similarity=0.279  Sum_probs=23.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-.++|+|++|||||||++.|.|-..+
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~~p   55 (359)
T 2yyz_A           29 GEFVALLGPSGCGKTTTLLMLAGIYKP   55 (359)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             CCEEEEEcCCCchHHHHHHHHHCCCCC
Confidence            347899999999999999999987643

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.95  E-value=0.0004  Score=58.16  Aligned_cols=27  Identities=19%  Similarity=0.165  Sum_probs=23.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      .....|+|+|++|||||||++.|.|..
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            456789999999999999999998754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.94  E-value=0.00033  Score=52.96  Aligned_cols=23  Identities=39%  Similarity=0.697  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ..|+|+|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999753

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.93  E-value=0.00048  Score=58.90  Aligned_cols=26  Identities=31%  Similarity=0.581  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      ...++|+|++|||||||+++|++...
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            45899999999999999999998754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.92  E-value=0.0006  Score=58.44  Aligned_cols=27  Identities=37%  Similarity=0.437  Sum_probs=23.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-.++|+|++|||||||++.|.|-..+
T Consensus        37 Ge~~~llGpnGsGKSTLLr~iaGl~~p   63 (372)
T 1v43_A           37 GEFLVLLGPSGCGKTTTLRMIAGLEEP   63 (372)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCCC
Confidence            347899999999999999999987653

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.91  E-value=0.00052  Score=58.87  Aligned_cols=26  Identities=31%  Similarity=0.445  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      -.++|+|++|||||||++.|.|-..+
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~p   55 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAGLEEP   55 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCCC
Confidence            47899999999999999999998653

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.91  E-value=0.00034  Score=54.18  Aligned_cols=24  Identities=21%  Similarity=0.209  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .++++|++|+|||||++.|.|...
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhcc
Confidence            589999999999999999987643

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.90  E-value=0.0002  Score=54.58  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ..|+|+|++|||||||++.|.+..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.90  E-value=0.0004  Score=53.40  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..++|+|++|||||||++.|.+
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            3689999999999999999974

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.89  E-value=0.00046  Score=58.88  Aligned_cols=26  Identities=31%  Similarity=0.432  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      +...|+++|++|||||||+++|+|.-
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            34589999999999999999998654

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.85  E-value=0.00051  Score=58.38  Aligned_cols=26  Identities=31%  Similarity=0.365  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      -.++|+|++|||||||++.|.|-..+
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~~p   52 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFHVP   52 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCccHHHHHHHHHcCCCC
Confidence            47899999999999999999987653

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.84  E-value=0.00064  Score=51.88  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      .+.++++|++|+|||||++.|++.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            367999999999999999999864

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.83  E-value=0.00063  Score=51.15  Aligned_cols=20  Identities=25%  Similarity=0.574  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSI   39 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l   39 (259)
                      ..|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47999999999999999999

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.82  E-value=0.00055  Score=57.81  Aligned_cols=26  Identities=27%  Similarity=0.436  Sum_probs=22.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      ...++++|++|||||||+++|+|...
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            34799999999999999999998754

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.81  E-value=0.00088  Score=52.31  Aligned_cols=26  Identities=19%  Similarity=0.339  Sum_probs=22.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ......|+|.|.+||||||+.+.|..
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            33457899999999999999999863

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.79  E-value=0.00066  Score=54.66  Aligned_cols=25  Identities=24%  Similarity=0.263  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ....|+|+|++|||||||++.|.+.
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999998763

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.78  E-value=0.00059  Score=58.57  Aligned_cols=26  Identities=31%  Similarity=0.400  Sum_probs=22.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      +...|+|+|++|||||||+++|++..
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            45689999999999999999998754

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.78  E-value=0.0012  Score=51.56  Aligned_cols=26  Identities=15%  Similarity=0.256  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      .....|+++|++||||||+.+.|.+.
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            34568999999999999999999875

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.77  E-value=0.00048  Score=58.66  Aligned_cols=27  Identities=22%  Similarity=0.299  Sum_probs=23.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-.++|+|++|||||||++.|.|-..+
T Consensus        31 Ge~~~llGpnGsGKSTLLr~iaGl~~p   57 (353)
T 1oxx_K           31 GERFGILGPSGAGKTTFMRIIAGLDVP   57 (353)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            347899999999999999999997653

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.74  E-value=0.008  Score=48.31  Aligned_cols=24  Identities=21%  Similarity=0.421  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ....|+|.|++|+|||++..++..
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999974

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.73  E-value=0.00092  Score=50.64  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4799999999999999999975

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.73  E-value=0.00029  Score=57.52  Aligned_cols=43  Identities=12%  Similarity=0.137  Sum_probs=29.4

Q ss_pred             CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ...+|++++|+|+..+.+..... ++ +   +    .+|.++|+||+|+.+.
T Consensus        19 l~~~D~vl~VvDar~P~~~~~~~-l~-l---l----~k~~iivlNK~DL~~~   61 (262)
T 3cnl_A           19 LRLVNTVVEVRDARAPFATSAYG-VD-F---S----RKETIILLNKVDIADE   61 (262)
T ss_dssp             HTTCSEEEEEEETTSTTTTSCTT-SC-C---T----TSEEEEEEECGGGSCH
T ss_pred             HhhCCEEEEEeeCCCCCcCcChH-HH-h---c----CCCcEEEEECccCCCH
Confidence            34669999999998555443211 11 1   1    2499999999999854

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.73  E-value=0.00069  Score=53.56  Aligned_cols=23  Identities=17%  Similarity=0.358  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ..|+|+|++||||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998653

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.72  E-value=0.00064  Score=53.71  Aligned_cols=25  Identities=16%  Similarity=0.256  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      .-.++|+|++|||||||++.|++..
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999998743

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.72  E-value=0.00089  Score=56.20  Aligned_cols=27  Identities=19%  Similarity=0.240  Sum_probs=22.8

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ...+..|+|+|++|||||||++.|.+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            345678999999999999999998643

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.71  E-value=0.00098  Score=51.77  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      +...|+|+|++||||||+.+.|.+
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            346899999999999999999863

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.70  E-value=0.00061  Score=51.95  Aligned_cols=25  Identities=28%  Similarity=0.388  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ...++|+|++|+|||||++++.+.-
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999998654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.70  E-value=0.00089  Score=55.89  Aligned_cols=26  Identities=19%  Similarity=0.263  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      .....|+|+|++|||||||++.|.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999999864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.70  E-value=0.00095  Score=57.57  Aligned_cols=26  Identities=35%  Similarity=0.441  Sum_probs=22.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|||||||++.|.|...
T Consensus        47 Ge~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           47 GQRVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCCC
Confidence            45789999999999999999998753

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.70  E-value=0.0012  Score=52.01  Aligned_cols=22  Identities=18%  Similarity=0.389  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..++|.|++|+|||||+..+..
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.69  E-value=0.00096  Score=53.15  Aligned_cols=26  Identities=23%  Similarity=0.282  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      .....|+|.|++||||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            44578999999999999999999864

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.69  E-value=0.0065  Score=53.07  Aligned_cols=25  Identities=20%  Similarity=0.457  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ++.-|+|.|+||+|||+|..++.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4568999999999999999999743

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.68  E-value=0.00092  Score=50.24  Aligned_cols=21  Identities=19%  Similarity=0.150  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 024985           21 TLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~   41 (259)
                      .|+|.|.+||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999863

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.67  E-value=0.00073  Score=60.42  Aligned_cols=25  Identities=32%  Similarity=0.402  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ...|+|+|++|||||||+|+|++.-
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3469999999999999999998755

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.67  E-value=0.00082  Score=58.57  Aligned_cols=26  Identities=31%  Similarity=0.364  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      +...|+|+|++|||||||+++|++.-
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence            44579999999999999999998653

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.67  E-value=0.0011  Score=51.66  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999976

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.66  E-value=0.001  Score=50.38  Aligned_cols=22  Identities=27%  Similarity=0.450  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..|+|.|.+||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.65  E-value=0.00065  Score=50.42  Aligned_cols=26  Identities=19%  Similarity=0.265  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ....++|+|++|+|||||++++.+..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            34579999999999999999998654

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.62  E-value=0.0012  Score=50.02  Aligned_cols=23  Identities=17%  Similarity=0.209  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      .+.|+++|.+|||||||++.|..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.62  E-value=0.00071  Score=57.89  Aligned_cols=26  Identities=23%  Similarity=0.341  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      ..+++|+|++|||||||++.|.|...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999987654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.62  E-value=0.0098  Score=51.83  Aligned_cols=24  Identities=25%  Similarity=0.459  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ++.-|+|.|+||+|||+|..++.+
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999974

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.62  E-value=0.0012  Score=54.56  Aligned_cols=28  Identities=25%  Similarity=0.325  Sum_probs=23.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ......|+|+|++|||||||.+.|.+.-
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l   55 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3456789999999999999999987543

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.60  E-value=0.0013  Score=59.88  Aligned_cols=27  Identities=37%  Similarity=0.528  Sum_probs=23.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-.++++|++|||||||++.|+|...+
T Consensus       369 G~~~~ivG~sGsGKSTLl~~l~g~~~p  395 (582)
T 3b60_A          369 GKTVALVGRSGSGKSTIASLITRFYDI  395 (582)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhccCC
Confidence            458999999999999999999987643

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.59  E-value=0.0011  Score=51.62  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ....|+|+|++|||||||++.|.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999975

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.59  E-value=0.001  Score=51.69  Aligned_cols=23  Identities=35%  Similarity=0.680  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ...|+|+|.+||||||+.+.|.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999863

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.58  E-value=0.0014  Score=59.65  Aligned_cols=27  Identities=37%  Similarity=0.516  Sum_probs=23.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-.++++|++|+|||||++.|+|...+
T Consensus       369 G~~~~ivG~sGsGKSTll~~l~g~~~p  395 (582)
T 3b5x_A          369 GKTVALVGRSGSGKSTIANLFTRFYDV  395 (582)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            458999999999999999999987653

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.57  E-value=0.014  Score=49.60  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 024985           21 TLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~   42 (259)
                      .++|.|++|+|||||++.+.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999754

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.57  E-value=0.0015  Score=50.61  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 024985           18 AERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      .+..|+|+|.+||||||+.+.|.
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La   41 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLA   41 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34589999999999999999985

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.56  E-value=0.0015  Score=50.17  Aligned_cols=22  Identities=14%  Similarity=0.425  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      +..|+|+|.+||||||+.+.|.
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~   26 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALA   26 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999985

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.56  E-value=0.001  Score=51.72  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      .+|+|+|.+||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999976

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.55  E-value=0.0013  Score=50.14  Aligned_cols=22  Identities=27%  Similarity=0.578  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...|+++|++||||||+.+.|.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La   26 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLA   26 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999985

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.54  E-value=0.0021  Score=49.88  Aligned_cols=25  Identities=16%  Similarity=0.444  Sum_probs=21.5

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHh
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ......|+|.|.+||||||+.+.|.
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHH
Confidence            3455789999999999999999886

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.53  E-value=0.0017  Score=58.48  Aligned_cols=31  Identities=23%  Similarity=0.290  Sum_probs=25.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKS   47 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~   47 (259)
                      .+.-.++|+|++|||||||++.|.|...+..
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~   75 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNL   75 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSSCCCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            3456899999999999999999999765433

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.53  E-value=0.0016  Score=50.36  Aligned_cols=26  Identities=19%  Similarity=0.293  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      .....|+|+|.+||||||+.+.|...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            44578999999999999999998754

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.53  E-value=0.0012  Score=60.12  Aligned_cols=27  Identities=33%  Similarity=0.332  Sum_probs=23.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-.++++|++|||||||++.|.|...+
T Consensus       367 G~~~~ivG~sGsGKSTll~~l~g~~~p  393 (578)
T 4a82_A          367 GETVAFVGMSGGGKSTLINLIPRFYDV  393 (578)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCCC
Confidence            458999999999999999999987653

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.53  E-value=0.21  Score=41.87  Aligned_cols=21  Identities=33%  Similarity=0.555  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 024985           21 TLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~   41 (259)
                      .++|.|++|+||||+++.|.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999999876

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.53  E-value=0.00092  Score=56.10  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=22.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ..+.++|+|++|||||||+|.|++..
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhc
Confidence            35688999999999999999999653

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.51  E-value=0.0016  Score=51.37  Aligned_cols=24  Identities=25%  Similarity=0.506  Sum_probs=20.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 024985           17 NAERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      .....|+|+|.+||||||+.+.|.
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La   25 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQ   25 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            345689999999999999999885

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.51  E-value=0.0017  Score=53.68  Aligned_cols=25  Identities=24%  Similarity=0.526  Sum_probs=21.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..+..|+|+|++||||||+.+.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999963

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.51  E-value=0.008  Score=49.09  Aligned_cols=23  Identities=22%  Similarity=0.486  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ...++|.|++|+|||+|++++.+
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999999964

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.50  E-value=0.0023  Score=57.65  Aligned_cols=29  Identities=21%  Similarity=0.314  Sum_probs=24.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFK   46 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~   46 (259)
                      +.-.++|+|++|||||||++.|.|...+.
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~   52 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGEIIPN   52 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence            44678999999999999999999976543

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.015  Score=50.11  Aligned_cols=25  Identities=20%  Similarity=0.446  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ++.-|+|.|+||+|||+|..++.+.
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHh
Confidence            3467999999999999999999743

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.49  E-value=0.0014  Score=59.94  Aligned_cols=28  Identities=29%  Similarity=0.420  Sum_probs=24.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      +.-.++++|++|+|||||++.|+|...+
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g~~~p  407 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMRFYDV  407 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence            3468999999999999999999987653

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.49  E-value=0.0019  Score=49.41  Aligned_cols=25  Identities=20%  Similarity=0.446  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ....|+|+|.+||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3468999999999999999998643

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.47  E-value=0.0016  Score=49.72  Aligned_cols=22  Identities=18%  Similarity=0.459  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..|+|.|.+||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999863

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.46  E-value=0.0018  Score=49.44  Aligned_cols=22  Identities=18%  Similarity=0.542  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...|+|+|.+||||||+.+.|.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999986

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.45  E-value=0.0017  Score=49.71  Aligned_cols=22  Identities=23%  Similarity=0.297  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..|+|.|.+||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999863

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.0021  Score=58.73  Aligned_cols=32  Identities=28%  Similarity=0.352  Sum_probs=26.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccccc
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK   48 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~   48 (259)
                      .+.-.++|+|++|+|||||++.|.|...+..+
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G  132 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLG  132 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence            34568999999999999999999997754433

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.45  E-value=0.0019  Score=49.11  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...|+++|.+||||||+.+.|.
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHH
Confidence            4679999999999999999986

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.013  Score=50.88  Aligned_cols=25  Identities=20%  Similarity=0.500  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ++.-|+|.|+||+|||+|..++.+.
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCCceECCCCchHHHHHHHHHHH
Confidence            3467999999999999999999743

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.44  E-value=0.0016  Score=59.38  Aligned_cols=27  Identities=30%  Similarity=0.270  Sum_probs=23.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-.++++|++|||||||++.|+|...+
T Consensus       369 Ge~~~ivG~sGsGKSTll~~l~g~~~~  395 (587)
T 3qf4_A          369 GSLVAVLGETGSGKSTLMNLIPRLIDP  395 (587)
T ss_dssp             TCEEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCccC
Confidence            458999999999999999999987653

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.0012  Score=58.15  Aligned_cols=27  Identities=19%  Similarity=0.341  Sum_probs=23.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      ....++|+|++|||||||++.|+|-..
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~  163 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYAL  163 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCccc
Confidence            346899999999999999999987653

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.39  E-value=0.33  Score=40.13  Aligned_cols=21  Identities=14%  Similarity=0.330  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 024985           21 TLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~   41 (259)
                      .+++.|++|+|||+++.++..
T Consensus        50 ~~L~~G~~G~GKT~la~~la~   70 (324)
T 3u61_B           50 IILHSPSPGTGKTTVAKALCH   70 (324)
T ss_dssp             EEEECSSTTSSHHHHHHHHHH
T ss_pred             EEEeeCcCCCCHHHHHHHHHH
Confidence            456667799999999999963

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.38  E-value=0.0017  Score=49.38  Aligned_cols=21  Identities=43%  Similarity=0.645  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 024985           21 TLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..+|+|++|+|||||+.+|.+
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.38  E-value=0.0023  Score=58.38  Aligned_cols=32  Identities=19%  Similarity=0.241  Sum_probs=26.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCccccc
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSK   48 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~   48 (259)
                      .+.-.++|+|++|+|||||++.|.|...+..+
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G  146 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLC  146 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCCCCCCC
Confidence            34568999999999999999999997654433

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.38  E-value=0.0019  Score=49.89  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 024985           21 TLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~   41 (259)
                      .|+|+|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999864

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.38  E-value=0.0013  Score=53.92  Aligned_cols=21  Identities=24%  Similarity=0.512  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 024985           22 LVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        22 I~l~G~~g~GKSslin~l~~~   42 (259)
                      ++|+|++|+|||||+++|.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.34  E-value=0.0024  Score=50.87  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=21.2

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHh
Q 024985           15 PSNAERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        15 ~~~~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      .......|+|+|.+||||||+.+.|.
T Consensus        12 ~~~~~~~I~l~G~~GsGKsT~a~~La   37 (233)
T 1ak2_A           12 ESPKGVRAVLLGPPGAGKGTQAPKLA   37 (233)
T ss_dssp             --CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            34455789999999999999999985

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.33  E-value=0.013  Score=51.45  Aligned_cols=25  Identities=24%  Similarity=0.538  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ++.-|+|.|+||+|||+|..++.+.
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhc
Confidence            4568999999999999999999743

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.32  E-value=0.0032  Score=48.11  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ....|+|+|.+||||||+.+.|...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4578999999999999999998643

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.31  E-value=0.0025  Score=48.98  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 024985           18 AERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ....|+|+|.+||||||+.+.|.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La   30 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIV   30 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999885

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.31  E-value=0.0016  Score=52.55  Aligned_cols=22  Identities=32%  Similarity=0.608  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 024985           21 TLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~   42 (259)
                      -++|+|++|+|||||+++|.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999854

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.30  E-value=0.0021  Score=50.68  Aligned_cols=22  Identities=18%  Similarity=0.299  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...|+|+|.+||||||+.+.|.
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La   26 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIK   26 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999985

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.30  E-value=0.0025  Score=57.31  Aligned_cols=28  Identities=18%  Similarity=0.356  Sum_probs=23.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFK   46 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~   46 (259)
                      .-.++|+|++|||||||++.|+|...+.
T Consensus       294 Gei~~i~G~nGsGKSTLl~~l~Gl~~p~  321 (538)
T 3ozx_A          294 GEIIGILGPNGIGKTTFARILVGEITAD  321 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            3478999999999999999999976543

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.29  E-value=0.0028  Score=49.02  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ...|+|.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999999743

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.29  E-value=0.0026  Score=49.46  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ...|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            36899999999999999999863

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.28  E-value=0.0026  Score=48.72  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      +..|+|+|.+||||||+.+.|.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIV   24 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3679999999999999999885

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.27  E-value=0.0023  Score=50.15  Aligned_cols=20  Identities=35%  Similarity=0.705  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~   40 (259)
                      +|+|.|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999985

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.24  E-value=0.0019  Score=57.22  Aligned_cols=24  Identities=29%  Similarity=0.314  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      -.++|+|++|||||||++.|.|..
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCC
Confidence            578999999999999999998643

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.24  E-value=0.0026  Score=50.39  Aligned_cols=22  Identities=27%  Similarity=0.450  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...|+|+|.+||||||+.+.|.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999986

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.22  E-value=0.0019  Score=64.25  Aligned_cols=27  Identities=33%  Similarity=0.311  Sum_probs=23.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-+|++||++|||||||++.|++-..+
T Consensus      1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1131 (1321)
T 4f4c_A         1105 GQTLALVGPSGCGKSTVVALLERFYDT 1131 (1321)
T ss_dssp             TCEEEEECSTTSSTTSHHHHHTTSSCC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCccC
Confidence            468999999999999999999987653

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.22  E-value=0.0031  Score=47.91  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ...|+|+|.+||||||+.+.|.+
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999975

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.22  E-value=0.0032  Score=50.54  Aligned_cols=23  Identities=17%  Similarity=0.466  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 024985           18 AERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      .+.+|+|.|++||||||+...|.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~   50 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLK   50 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            56789999999999999999986

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.19  E-value=0.0031  Score=49.20  Aligned_cols=24  Identities=25%  Similarity=0.356  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ....|+|.|.+||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999863

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.19  E-value=0.0027  Score=49.80  Aligned_cols=20  Identities=45%  Similarity=0.803  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~   40 (259)
                      +|+|+|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIV   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999985

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.17  E-value=0.0024  Score=51.60  Aligned_cols=26  Identities=23%  Similarity=0.326  Sum_probs=21.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ...+..|+++|++||||||+.+.|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34457899999999999999999864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.17  E-value=0.0033  Score=56.64  Aligned_cols=29  Identities=21%  Similarity=0.280  Sum_probs=24.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKS   47 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~   47 (259)
                      .-.++|+|+.|+|||||++.|+|...+..
T Consensus       312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~  340 (538)
T 1yqt_A          312 GEVIGIVGPNGIGKTTFVKMLAGVEEPTE  340 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSB
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            35789999999999999999999765433

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.16  E-value=0.0042  Score=49.04  Aligned_cols=25  Identities=16%  Similarity=0.509  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ..+.|+|+|+|||||+|....|...
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3456788999999999999888643

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.15  E-value=0.0039  Score=47.57  Aligned_cols=22  Identities=23%  Similarity=0.511  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      +..|+|.|.+||||||+.+.|.
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~   27 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIV   27 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999885

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.14  E-value=0.0036  Score=49.12  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      +..|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.13  E-value=0.0027  Score=48.02  Aligned_cols=21  Identities=29%  Similarity=0.569  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 024985           21 TLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~   41 (259)
                      +|+|+|++||||||+...|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999999863

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.13  E-value=0.0035  Score=57.22  Aligned_cols=29  Identities=21%  Similarity=0.280  Sum_probs=24.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKS   47 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~   47 (259)
                      .-.++|+|++|+|||||++.|.|...+..
T Consensus       382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~  410 (607)
T 3bk7_A          382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTE  410 (607)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSB
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence            34789999999999999999999765433

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.12  E-value=0.0023  Score=54.28  Aligned_cols=26  Identities=19%  Similarity=0.215  Sum_probs=22.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-+++|+|++|+|||||++.|.|...
T Consensus        71 Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           71 GQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45899999999999999999987653

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.10  E-value=0.0035  Score=48.26  Aligned_cols=23  Identities=17%  Similarity=0.504  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ...|+|.|.+||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999853

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.09  E-value=0.0051  Score=53.05  Aligned_cols=22  Identities=32%  Similarity=0.549  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ++.|+|+|+||||||||...|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La   23 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLA   23 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHH
T ss_pred             CcEEEEECcchhhHHHHHHHHH
Confidence            4578999999999999999885

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.09  E-value=0.0024  Score=52.32  Aligned_cols=22  Identities=32%  Similarity=0.608  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 024985           21 TLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~   42 (259)
                      -|+|+|++|+|||||+++|.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3999999999999999999854

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.07  E-value=0.004  Score=47.11  Aligned_cols=24  Identities=33%  Similarity=0.530  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ...++|.|++|+|||++++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998744

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.07  E-value=0.0036  Score=50.65  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..|+|+|++|||||||.+.|.+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999999853

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.06  E-value=0.003  Score=49.77  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..++++|++|+|||||++.|++
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4788999999999999999874

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.05  E-value=0.0039  Score=50.59  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ...|+|+|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999863

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.04  E-value=0.0036  Score=62.26  Aligned_cols=28  Identities=32%  Similarity=0.375  Sum_probs=24.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFK   46 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~   46 (259)
                      ...++++|++|||||||++.|+|...+.
T Consensus       444 G~~vaivG~sGsGKSTll~ll~~~~~~~  471 (1321)
T 4f4c_A          444 GQTVALVGSSGCGKSTIISLLLRYYDVL  471 (1321)
T ss_dssp             TCEEEEEECSSSCHHHHHHHHTTSSCCS
T ss_pred             CcEEEEEecCCCcHHHHHHHhccccccc
Confidence            4589999999999999999999887543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.03  E-value=0.0027  Score=53.54  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ..++|+|++|+|||||++.|.+.-
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            468999999999999999998643

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.03  E-value=0.0042  Score=56.72  Aligned_cols=28  Identities=25%  Similarity=0.375  Sum_probs=24.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCccccc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSK   48 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~   48 (259)
                      .++|+|++|+|||||++.|.|...+..+
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl~~p~~G  407 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGALKPDEG  407 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence            4899999999999999999998764443

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.03  E-value=0.0016  Score=50.94  Aligned_cols=21  Identities=24%  Similarity=0.435  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 024985           21 TLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~   41 (259)
                      .|+|+|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.02  E-value=0.0038  Score=46.69  Aligned_cols=20  Identities=30%  Similarity=0.484  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~   40 (259)
                      +|+|.|.+||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLS   21 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999985

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.02  E-value=0.0053  Score=51.67  Aligned_cols=25  Identities=40%  Similarity=0.551  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      .+.|+|+|++|||||||...|...-
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHC
Confidence            3579999999999999999997543

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.00  E-value=0.0033  Score=51.92  Aligned_cols=24  Identities=17%  Similarity=0.178  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      .-.++|+|++|+|||||++.|++.
T Consensus        35 G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           35 GEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            347899999999999999998754

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.99  E-value=0.0028  Score=51.21  Aligned_cols=23  Identities=35%  Similarity=0.640  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ...|+|+|++||||||+.+.|.+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.99  E-value=0.0029  Score=55.48  Aligned_cols=26  Identities=19%  Similarity=0.164  Sum_probs=22.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-+++|+|++|+|||||++.|.|...
T Consensus       157 Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          157 GQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccC
Confidence            45899999999999999999987653

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.98  E-value=0.0033  Score=47.91  Aligned_cols=21  Identities=43%  Similarity=0.653  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      ..|+|+|.+||||||+...|.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La   23 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLA   23 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            469999999999999999885

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.98  E-value=0.025  Score=47.35  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      +...|+|.|++|+|||+|..++.+
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHH
Confidence            446899999999999999999974

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=95.98  E-value=0.006  Score=50.19  Aligned_cols=97  Identities=7%  Similarity=-0.017  Sum_probs=52.1

Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhccc---ccCeEEEEEeC-CCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKK---VFDYMIVVFTG-GNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~---~~~~~ivV~nk-~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ++..+|++|||||.+++-......-+..|..++..+   ...|++|..|| -|....  .+..++... .  .+.    .
T Consensus       207 Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~e~-L--~L~----~  277 (312)
T 3l2o_B          207 VCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHE-L--HLN----L  277 (312)
T ss_dssp             HHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHHHH-T--TGG----G
T ss_pred             HhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHHHH-c--CCc----c
Confidence            445569999999997332211222222222222111   12489999997 466432  222222210 0  011    1


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ....+++...++.++    +|+.|-++++.+.+.
T Consensus       278 l~r~W~Iq~csA~tG----eGL~EGldWL~~~l~  307 (312)
T 3l2o_B          278 LNHPWLVQDTEAETL----TGFLNGIEWILEEVE  307 (312)
T ss_dssp             GCSCEEEEEEETTTC----TTHHHHHHHHHHHSC
T ss_pred             CCCcEEEEecccCCC----cCHHHHHHHHHHHHH
Confidence            234566666666665    899999999877654

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.98  E-value=0.0051  Score=45.47  Aligned_cols=21  Identities=33%  Similarity=0.602  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...+++|+.|+||||++.+|.
T Consensus        24 g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            456889999999999999975

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.96  E-value=0.0043  Score=49.56  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 024985           18 AERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      .+..|++.|++||||||+.+.|.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999986

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.95  E-value=0.0045  Score=52.92  Aligned_cols=20  Identities=35%  Similarity=0.408  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~   40 (259)
                      -.+|+|++|||||||+++|+
T Consensus        25 ~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            56689999999999999986

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.94  E-value=0.0037  Score=46.97  Aligned_cols=21  Identities=24%  Similarity=0.575  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      ..|+|.|.+||||||+.+.|.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La   23 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELA   23 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            369999999999999999985

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.94  E-value=0.0041  Score=48.72  Aligned_cols=20  Identities=25%  Similarity=0.501  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~   40 (259)
                      +|+|.|.+||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIM   21 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999985

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.94  E-value=0.0036  Score=53.69  Aligned_cols=23  Identities=22%  Similarity=0.427  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ...|+++|++|+|||||++.|.+
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            45899999999999999999985

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.90  E-value=0.0051  Score=48.07  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ...|+++|.+||||||+.+.|.+
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.90  E-value=0.0042  Score=50.10  Aligned_cols=24  Identities=29%  Similarity=0.623  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +..|+|.|++|+|||+|+++|.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999999753

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.89  E-value=0.0064  Score=49.96  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 024985           18 AERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ....|+|.|.+||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999986

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.89  E-value=0.0033  Score=47.71  Aligned_cols=22  Identities=23%  Similarity=0.373  Sum_probs=15.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...|+|.|.+||||||+.+.|.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999985

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.88  E-value=0.0045  Score=47.31  Aligned_cols=21  Identities=19%  Similarity=0.457  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 024985           21 TLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~   41 (259)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999863

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=95.83  E-value=0.052  Score=44.56  Aligned_cols=66  Identities=17%  Similarity=-0.043  Sum_probs=37.8

Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHH---hcccccCe-EEEE
Q 024985           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESL---FGKKVFDY-MIVV  143 (259)
Q Consensus        69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~---~~~~~~~~-~ivV  143 (259)
                      ..++|||||+....         .....+..    +|.+|+++..+ ..+-.. ..+++.+...   ++..  .+ .-+|
T Consensus       155 yD~IiiD~pp~~~~---------~~~~~l~~----aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~--~~~~gvv  218 (298)
T 2oze_A          155 YDLIIIDTVPTPSV---------YTNNAIVA----SDYVMIPLQAE-EESTNNIQNYISYLIDLQEQFNPG--LDMIGFV  218 (298)
T ss_dssp             CSEEEEEECSSCSH---------HHHHHHHH----CSEEEEEECGG-GCCHHHHHHHHHHHHHHHHHHCTT--CEEEEEE
T ss_pred             CCEEEEECCCCccH---------HHHHHHHH----CCeEEEEecCc-HHHHHHHHHHHHHHHHHHHHhCCC--CeEEEEE
Confidence            46899999985431         11122222    48999999887 444332 3445555442   2221  24 4589


Q ss_pred             EeCCCCC
Q 024985          144 FTGGNEL  150 (259)
Q Consensus       144 ~nk~D~~  150 (259)
                      +|+.|..
T Consensus       219 ~n~~~~~  225 (298)
T 2oze_A          219 PYLVDTD  225 (298)
T ss_dssp             EEESCTT
T ss_pred             EEEECCC
Confidence            9999854

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=95.83  E-value=0.0049  Score=61.16  Aligned_cols=27  Identities=33%  Similarity=0.346  Sum_probs=23.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-.++++|++|||||||++.|+|...+
T Consensus       416 G~~~~ivG~sGsGKSTl~~ll~g~~~~  442 (1284)
T 3g5u_A          416 GQTVALVGNSGCGKSTTVQLMQRLYDP  442 (1284)
T ss_dssp             TCEEEEECCSSSSHHHHHHHTTTSSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            458999999999999999999987653

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.80  E-value=0.0047  Score=48.24  Aligned_cols=23  Identities=13%  Similarity=-0.028  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ...++++|++|+|||||+..|++
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999999986

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.79  E-value=0.0058  Score=49.24  Aligned_cols=24  Identities=25%  Similarity=0.286  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ....|+|.|.+||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998854

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.76  E-value=0.0056  Score=48.38  Aligned_cols=20  Identities=30%  Similarity=0.697  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~   40 (259)
                      .|+|.|.+||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La   21 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVK   21 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999985

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.74  E-value=0.0061  Score=47.11  Aligned_cols=23  Identities=30%  Similarity=0.333  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ..|+|.|++|+|||+|+.++.+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999998743

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.74  E-value=0.0046  Score=49.12  Aligned_cols=24  Identities=13%  Similarity=0.165  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      .-.++|+|++|+|||||+..|++.
T Consensus        24 G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           24 GSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            357899999999999999999864

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.73  E-value=0.008  Score=47.79  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ....|+|.|.+||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4578999999999999999998643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.72  E-value=0.0035  Score=60.00  Aligned_cols=26  Identities=27%  Similarity=0.447  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|+|||||++.|+|...
T Consensus       699 GeivaIiGpNGSGKSTLLklLaGll~  724 (986)
T 2iw3_A          699 SSRIAVIGPNGAGKSTLINVLTGELL  724 (986)
T ss_dssp             TCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34799999999999999999998764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.70  E-value=0.0063  Score=45.59  Aligned_cols=22  Identities=36%  Similarity=0.540  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      .-+|+|.|.+||||||+.+.|.
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La   28 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELG   28 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHH
Confidence            3589999999999999999885

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.69  E-value=0.00069  Score=54.00  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .++|+|++|||||||+++|.+...
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcccc
Confidence            457899999999999999987654

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.69  E-value=0.0062  Score=47.65  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 024985           21 TLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +|+|+|+|||||+|....|...
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999888643

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.67  E-value=0.037  Score=47.49  Aligned_cols=24  Identities=33%  Similarity=0.613  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ....|+|.|++|+|||+|..+|..
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~  170 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAA  170 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999963

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.67  E-value=0.015  Score=49.25  Aligned_cols=21  Identities=19%  Similarity=0.398  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 024985           21 TLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~   41 (259)
                      .++|.|++|+||||++..+..
T Consensus        40 ~~ll~G~~G~GKT~la~~la~   60 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAK   60 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.65  E-value=0.0054  Score=46.29  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ...|+|.|++|+|||+++..+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999988643

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.65  E-value=0.0064  Score=47.78  Aligned_cols=21  Identities=33%  Similarity=0.599  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      ..|+|+|.+||||||+.+.|.
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La   26 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIK   26 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999985

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.63  E-value=0.007  Score=47.75  Aligned_cols=24  Identities=17%  Similarity=0.254  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ...++|.|++|+|||+|+..+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999998743

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.63  E-value=0.011  Score=48.86  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      .+.-++|.|+||+|||+|..+|..
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345678889999999999999974

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.54  E-value=0.0096  Score=49.51  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      +..|+|+|+||||||||...|..
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHH
Confidence            46789999999999999999863

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.51  E-value=0.0082  Score=49.51  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999874

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.50  E-value=0.0097  Score=46.21  Aligned_cols=24  Identities=29%  Similarity=0.487  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ...|+|+|+||+|||||...|...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            467999999999999999999744

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.50  E-value=0.0091  Score=46.14  Aligned_cols=25  Identities=20%  Similarity=0.361  Sum_probs=21.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      +-...|+|.|.+||||||+.+.|..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998853

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.44  E-value=0.018  Score=50.00  Aligned_cols=24  Identities=33%  Similarity=0.308  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ....|+++|.+||||||+.+.|..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999874

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.44  E-value=0.0098  Score=49.56  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ++.|+|+|+||||||||...|...
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            357899999999999999998643

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.37  E-value=0.0053  Score=50.73  Aligned_cols=24  Identities=17%  Similarity=0.327  Sum_probs=17.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ....|+|.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998853

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.36  E-value=0.011  Score=47.06  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ...|+|+|.+||||||+.+.|.+
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998864

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.35  E-value=0.013  Score=48.31  Aligned_cols=25  Identities=20%  Similarity=0.441  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +...++|.|++|+|||++..+|.+.
T Consensus        46 ~~~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           46 PIGSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             CSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHH
Confidence            3457999999999999999998753

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.35  E-value=0.0048  Score=55.61  Aligned_cols=26  Identities=27%  Similarity=0.414  Sum_probs=22.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ....|+|+|.+|||||||++.|.+.-
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhh
Confidence            45689999999999999999998654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.35  E-value=0.0096  Score=46.03  Aligned_cols=21  Identities=19%  Similarity=0.411  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 024985           21 TLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~   41 (259)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999853

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.35  E-value=0.012  Score=48.59  Aligned_cols=25  Identities=20%  Similarity=0.448  Sum_probs=21.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      .....|+|.|++|+|||++..++..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999987764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.33  E-value=0.01  Score=43.38  Aligned_cols=24  Identities=17%  Similarity=0.268  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ...|++.|++|+|||++..+|...
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHh
Confidence            356999999999999999999643

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=95.33  E-value=0.0099  Score=59.00  Aligned_cols=27  Identities=33%  Similarity=0.313  Sum_probs=23.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-+++++|++|+|||||++.|+|...+
T Consensus      1059 Ge~v~ivG~sGsGKSTl~~~l~g~~~p 1085 (1284)
T 3g5u_A         1059 GQTLALVGSSGCGKSTVVQLLERFYDP 1085 (1284)
T ss_dssp             SSEEEEECSSSTTHHHHHHHHTTSSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence            458999999999999999999987643

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.32  E-value=0.012  Score=49.34  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.32  E-value=0.011  Score=48.71  Aligned_cols=24  Identities=29%  Similarity=0.549  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      +...|+|.|++|+|||++++++.+
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHH
Confidence            346899999999999999999975

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.32  E-value=0.0075  Score=49.34  Aligned_cols=34  Identities=24%  Similarity=0.194  Sum_probs=24.7

Q ss_pred             CCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 024985            7 DVDSMPTSPSNAERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus         7 ~~~~~~~s~~~~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..+|.+.. -.....++|+|++|+|||||+..|++
T Consensus        19 ~ld~~lgg-l~~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           19 PLDYVLPN-MVAGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             CCCEEETT-EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             ChheeECC-ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            34454432 22345789999999999999998875

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.28  E-value=0.013  Score=45.72  Aligned_cols=21  Identities=33%  Similarity=0.602  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...+|+|+.|+||||++.+|.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHH
Confidence            467889999999999999874

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=95.26  E-value=0.007  Score=55.99  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=19.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      .-.++|+|++|||||||++.|+
T Consensus       348 Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          348 GTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TSEEEEECSTTSSHHHHHTTTH
T ss_pred             CCEEEEEeeCCCCHHHHHHHHH
Confidence            3478999999999999998764

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.26  E-value=0.011  Score=49.86  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      +.|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            5799999999999999988763

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.23  E-value=0.012  Score=48.78  Aligned_cols=24  Identities=21%  Similarity=0.441  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ...|+|.|++|+|||+|+++|.+.
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            457999999999999999999753

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.22  E-value=0.067  Score=50.28  Aligned_cols=26  Identities=23%  Similarity=0.484  Sum_probs=22.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ++.-|+|.|++|+|||+|.+++.+..
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~el  262 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANET  262 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999998543

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=95.21  E-value=0.0031  Score=54.64  Aligned_cols=20  Identities=30%  Similarity=0.388  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~   40 (259)
                      .++|+|++|+|||||+++|.
T Consensus        62 ~~~lvG~NGaGKStLl~aI~   81 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDALG   81 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            88999999999999998884

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.20  E-value=0.0088  Score=57.28  Aligned_cols=25  Identities=28%  Similarity=0.373  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      .-.++|+|++|+|||||++.|.|..
T Consensus       461 Ge~v~LiGpNGsGKSTLLk~LagG~  485 (986)
T 2iw3_A          461 ARRYGICGPNGCGKSTLMRAIANGQ  485 (986)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3478999999999999999999644

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.18  E-value=0.01  Score=47.21  Aligned_cols=26  Identities=15%  Similarity=0.194  Sum_probs=18.7

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ......|+|.|.+||||||+++.|..
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999863

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.09  E-value=0.011  Score=47.88  Aligned_cols=25  Identities=20%  Similarity=0.242  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      .....|+|.|..||||||+.+.|..
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999864

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.09  E-value=0.01  Score=43.31  Aligned_cols=24  Identities=13%  Similarity=0.195  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ...|++.|++|+|||++..+|...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHh
Confidence            346999999999999999999743

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.07  E-value=0.074  Score=44.18  Aligned_cols=49  Identities=18%  Similarity=0.014  Sum_probs=31.6

Q ss_pred             CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ...+|.+++|+|+..+..... .+-+.|.....  ...|.++|+||+|+.++
T Consensus        84 ~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~--~~~~~vivlnK~DL~~~  132 (307)
T 1t9h_A           84 ICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEA--NDIQPIICITKMDLIED  132 (307)
T ss_dssp             EECCCEEEEEEESTTTTCCHH-HHHHHHHHHHT--TTCEEEEEEECGGGCCC
T ss_pred             HHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHH--CCCCEEEEEECCccCch
Confidence            457799999999985544433 23333322111  12388999999999865

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=94.99  E-value=0.016  Score=49.49  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=20.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSI   39 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l   39 (259)
                      ....+|+|+|.+|||||||+..+
T Consensus        31 ~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHH
Confidence            34689999999999999999886

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=94.98  E-value=0.011  Score=46.05  Aligned_cols=22  Identities=36%  Similarity=0.501  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..+++.|++|+||||++.+|..
T Consensus        59 n~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999888764

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.97  E-value=0.013  Score=51.19  Aligned_cols=25  Identities=20%  Similarity=0.389  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ++.-|+|.||||+|||+|..++.+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHH
Confidence            3568999999999999999999743

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.91  E-value=0.019  Score=46.63  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      .....++|.|++|+|||++..++..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHH
Confidence            3456899999999999999999974

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.88  E-value=0.014  Score=45.08  Aligned_cols=21  Identities=33%  Similarity=0.556  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 024985           21 TLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~   41 (259)
                      .++|.|++|+|||+++..+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999999874

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=94.84  E-value=0.06  Score=51.51  Aligned_cols=21  Identities=19%  Similarity=0.177  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSI   39 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l   39 (259)
                      ...++|+|+.|+||||+++.+
T Consensus       662 g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          662 QMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             BCEEEEECCTTSSHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHH
Confidence            457899999999999999998

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.78  E-value=0.017  Score=49.01  Aligned_cols=25  Identities=28%  Similarity=0.496  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ....++|.|++|+|||||++.+.+.
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999999754

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=94.77  E-value=0.014  Score=50.96  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ...++|+|++|+|||||+++|.+.
T Consensus        26 ~~~~~i~G~nG~GKstll~ai~~~   49 (430)
T 1w1w_A           26 SNFTSIIGPNGSGKSNMMDAISFV   49 (430)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            356889999999999999998753

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=94.76  E-value=0.015  Score=49.38  Aligned_cols=25  Identities=16%  Similarity=0.256  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ...+.|+|++|+|||||++.|++..
T Consensus       131 G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          131 QAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999998654

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.74  E-value=0.019  Score=47.84  Aligned_cols=23  Identities=30%  Similarity=0.340  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ...++|.|++|+|||+|+.+|..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999874

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.71  E-value=0.053  Score=51.56  Aligned_cols=24  Identities=33%  Similarity=0.530  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ...++|+|++|+|||+++..+...
T Consensus       191 ~~~vlL~G~pG~GKT~la~~la~~  214 (854)
T 1qvr_A          191 KNNPVLIGEPGVGKTAIVEGLAQR  214 (854)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCceEEEcCCCCCHHHHHHHHHHH
Confidence            356899999999999999998754

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.71  E-value=0.021  Score=45.50  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      +..|++.|..||||||+++.|..
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	259
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	2e-25
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	2e-07
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	1e-04
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	4e-04
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	0.003

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 98.7 bits (245), Expect = 2e-25
 Identities = 41/225 (18%), Positives = 84/225 (37%), Gaps = 25/225 (11%)

Query: 19  ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPG 78
             T++++G+ G GKS+T NSI+G R        S   +   + R+    G  +N+IDTPG
Sbjct: 32  SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR--AGFTLNIIDTPG 89

Query: 79  LFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSV-RNRFSEEGGAAIHSLESLFGKKVF 137
           L +    ++     I     +    I  +L V  +   R          ++   FGK ++
Sbjct: 90  LIEGGYINDMALNIIKSF--LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIW 147

Query: 138 DYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRR----------VLFDNKT 187
           +  IV  T       +    +++   +  + L ++++   + +          VL +N  
Sbjct: 148 NKAIVALTHAQFSPPDGLPYDEFF-SKRSEALLQVVRSGASLKKDAQASDIPVVLIENSG 206

Query: 188 KDAATR---------TEQVGKLISLVNSVILENGGQPYSDEIFAE 223
           +                 +  L+  +  V L      + D+   +
Sbjct: 207 RCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLID 251

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.0 bits (116), Expect = 2e-07
 Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 15/165 (9%)

Query: 16  SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTC-EMQRTMLKDGQVVNVI 74
            ++   + + G TG+GKS+  N++ G    +  A  +GV +   E       +   V   
Sbjct: 53  DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 112

Query: 75  DTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK 134
           D PG+  ++   +   +++                +     RF +       ++     K
Sbjct: 113 DLPGIGSTNFPPDTYLEKMKFY--------EYDFFIIISATRFKKNDIDIAKAISM-MKK 163

Query: 135 KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR 179
           +       V T  +    N+   E     +  K L++I   C N 
Sbjct: 164 EF----YFVRTKVDSDITNEADGEPQTFDK-EKVLQDIRLNCVNT 203

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 3/137 (2%)

Query: 24  LVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83
           LVG    GKS   + +   +     A     T    +      DG+   + D PGL + +
Sbjct: 6   LVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63

Query: 84  ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVV 143
                +  + ++ I      I  V+ +  +  R   +    I+   S +  ++ +   ++
Sbjct: 64  HQGVGLGHQFLRHIERT-RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQII 122

Query: 144 FTGGNELEDNDETLEDY 160
                ++ +  E LE +
Sbjct: 123 VANKMDMPEAAENLEAF 139

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 24  LVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83
           LVG    GKS+   ++         A     T +  +    + + +   + D PG+ + +
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63

Query: 84  ADSEFVSKEIVKCIGMAKDGIH 105
           ++ + +  E ++ I   +  ++
Sbjct: 64  SEGKGLGLEFLRHIARTRVLLY 85

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 24  LVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83
           ++G    GKS   N +  +   K+     G        +  +K G+ + ++DTPG+    
Sbjct: 117 IIGIPNVGKSTLINRLAKKNIAKT-----GDRPGITTSQQWVKVGKELELLDTPGILWPK 171

Query: 84  ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEE 120
            + E V   +    G  KD I  +  V     RF EE
Sbjct: 172 FEDELVGLRLA-VTGAIKDSIINLQDVAVFGLRFLEE 207

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.91
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.87
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.87
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.86
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.84
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.84
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.83
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.83
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.82
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.81
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.8
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.8
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.8
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.79
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.78
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.78
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.77
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.77
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.77
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.77
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.76
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.75
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.75
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.75
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.75
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.75
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.75
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.74
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.74
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.73
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.73
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.73
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.72
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.72
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.72
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.72
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.72
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.71
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.71
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.71
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.69
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.69
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.69
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.69
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.69
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.68
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.67
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.67
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.66
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.64
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.64
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.63
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.62
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.61
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.6
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.6
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.6
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.55
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.54
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.52
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.51
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.45
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.44
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.42
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.41
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.4
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.4
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.28
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.23
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.19
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.18
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.14
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.13
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.12
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.98
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.9
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.88
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.81
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.81
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.79
d1okkd2	207	GTPase domain of the signal recognition particle r	98.77
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.74
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	98.44
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.05
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.9
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.73
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.61
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.55
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.55
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.51
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.51
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.51
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.44
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.42
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.42
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.39
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.38
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.37
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.35
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.33
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.33
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.32
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.32
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.31
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.27
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.27
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.26
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.26
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.25
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.24
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.23
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.22
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.2
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.18
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.17
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.15
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.13
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.13
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.11
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.11
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.07
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.07
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.06
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.06
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.03
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.02
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.01
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.0
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.97
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.96
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.95
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.94
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.92
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.91
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.89
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.87
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.86
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.85
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.84
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.84
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.84
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.81
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.78
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.78
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.77
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.76
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.76
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.75
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.74
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.74
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.7
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.68
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.66
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.58
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.57
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.55
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.53
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.46
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.35
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.31
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.29
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.27
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.26
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.2
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	96.17
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.17
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.14
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.12
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.07
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.04
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.03
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.0
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.74
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.74
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.73
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.7
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.62
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.58
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	95.54
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.51
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.44
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.42
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.41
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.39
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.39
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.35
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.33
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.29
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.26
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.19
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.13
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.12
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.1
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.06
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.06
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.99
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	94.93
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.85
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.84
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.83
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.68
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.58
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.48
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.36
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.36
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.25
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.21
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.06
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.98
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.58
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.54
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.4
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.26
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.16
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.1
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	92.95
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.92
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.83
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.83
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	92.7
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	92.63
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	92.59
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	92.59
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.58
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.56
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.52
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	92.5
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.47
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.14
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.8
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	91.8
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	91.45
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.22
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	90.3
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	90.02
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	89.09
d1xpua3	289	Transcription termination factor Rho, ATPase domai	88.81
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	88.12
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	87.4
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	86.2
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	85.36
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	82.77
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	82.67
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.27
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.76
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	81.69
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	80.34
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.28
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	80.21

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.93  E-value=3.6e-25  Score=180.51  Aligned_cols=196  Identities=20%  Similarity=0.303  Sum_probs=143.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ...++|+|+|++|||||||+|+|+|...+.+.. ..++|+.+..+... ..+..+.||||||+.++....+.+...+..+
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~-~~~~T~~~~~~~~~-~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRS-RAGFTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEE-ETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecC-CCCcceeEEEEEEE-eccEEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            456899999999999999999999999876653 35677777766655 6788999999999998766555555555444


Q ss_pred             HhhcCCCccEEEEEEeCC-CCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVR-NRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      .  ...++|+++||++++ .+++..+...++.+...||..++++++||+||+|...+++..+++|+.. ....+..++..
T Consensus       108 ~--~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~-~~~~l~~~i~~  184 (257)
T d1h65a_         108 L--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRS  184 (257)
T ss_dssp             T--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHH
T ss_pred             H--hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHh-hhHHHHHHHHH
Confidence            3  345789999999886 4699999999999999999999999999999999987665677777652 33455666666


Q ss_pred             cCC----------cEEEEeCCCccc---------ccchhHHHHHHHHHHHHHHHhCCCCCC
Q 024985          176 CEN----------RRVLFDNKTKDA---------ATRTEQVGKLISLVNSVILENGGQPYS  217 (259)
Q Consensus       176 ~~~----------~~~~~~~~~~~~---------~~~~~~i~eLl~~i~~~~~~~~~~~~~  217 (259)
                      |..          ...++++.....         ......+.+++..+.+++...+...+.
T Consensus       185 ~~~~~~~~~~~~~~~~l~en~~~~~~n~~~ekvlp~~~~~~~~lv~~i~~~~~~~~~~i~~  245 (257)
T d1h65a_         185 GASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFV  245 (257)
T ss_dssp             HTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEEC
T ss_pred             HhhhhhhhccccCCEEEEecCCcccccccccccccCCcchHHHHHHHHHHHHHcCCCCccc
Confidence            542          223333321100         011246788888888888766655443

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=6.1e-24  Score=163.89  Aligned_cols=171  Identities=20%  Similarity=0.187  Sum_probs=116.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      .+|+|+|.+|||||||+|+|+|....... ...++|......... ..+..+.++||||+........   ..+......
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~-~~~~tt~~~~~~~~~-~~~~~~~~~DtpG~~~~~~~~~---~~~~~~~~~   80 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPIS-PRPQTTRKRLRGILT-EGRRQIVFVDTPGLHKPMDALG---EFMDQEVYE   80 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEE-ETTEEEEEEECCCCCCCCSHHH---HHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeec-ccCCcccccccceee-eeeeeeeecccccccccccccc---hhccccccc
Confidence            58999999999999999999998753332 234455555444333 6778999999999986544322   233344444


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR  179 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (259)
                      +...+|++|||+|++.+++..+..+++.++...+   ..|+++|+||+|+....    +        ..++.+.+..+..
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~---~~piilv~NK~Dl~~~~----~--------~~~~~~~~~~~~~  145 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLVGNKLDAAKYP----E--------EAMKAYHELLPEA  145 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCSSH----H--------HHHHHHHHTSTTS
T ss_pred             ccccccceeeeechhhhhcccccchhhheecccc---chhhhhhhcccccccCH----H--------HHHHHHHhhcccC
Confidence            5678899999999998888888777777765432   35999999999987541    1        1222333333432


Q ss_pred             EEEEeCCCcccccchhHHHHHHHHHHHHHHHhCCCCC
Q 024985          180 RVLFDNKTKDAATRTEQVGKLISLVNSVILENGGQPY  216 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~~~~~  216 (259)
                      .+ +..++..    ..|+.+|++.|.+.+++ ++.+|
T Consensus       146 ~~-~~iSA~~----~~gi~~L~~~i~~~lpe-~p~~~  176 (178)
T d1wf3a1         146 EP-RMLSALD----ERQVAELKADLLALMPE-GPFFY  176 (178)
T ss_dssp             EE-EECCTTC----HHHHHHHHHHHHTTCCB-CCCSS
T ss_pred             ce-EEEecCC----CCCHHHHHHHHHHhCCC-CCCCC
Confidence            22 2233333    38999999999998875 44444

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.87  E-value=1.5e-21  Score=150.87  Aligned_cols=167  Identities=19%  Similarity=0.189  Sum_probs=104.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHH----HHHHHHHH
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEF----VSKEIVKC   96 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~----~~~~~~~~   96 (259)
                      +|+|+|++|||||||+|+|+|.....  ...+++|+.....  .   ...+.+|||||++........    +...+...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~--~~~~g~T~~~~~~--~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~   74 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRR--GKRPGVTRKIIEI--E---WKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   74 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSS--SSSTTCTTSCEEE--E---ETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee--eCCCCEeeccccc--c---cccceecccCCceeccccccccccccchhhhhh
Confidence            69999999999999999999987522  2345667664432  2   235789999998765544332    33344444


Q ss_pred             HhhcCCCccEEEEEEeCCC-----------CCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCC
Q 024985           97 IGMAKDGIHAVLLVFSVRN-----------RFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPEC  165 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~-----------~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~  165 (259)
                      .......+|++++|+|+..           .....+.++++.+.. .+    .|+++|+||+|+..... ...+.+..  
T Consensus        75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~----~p~iiv~NK~D~~~~~~-~~~~~~~~--  146 (184)
T d2cxxa1          75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE-LD----IPTIVAVNKLDKIKNVQ-EVINFLAE--  146 (184)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH-TT----CCEEEEEECGGGCSCHH-HHHHHHHH--
T ss_pred             hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH-cC----CCEEEEEeeeehhhhHH-HHHHHHHH--
Confidence            5555667899999999752           355566667776665 33    39999999999885521 11111100  


Q ss_pred             CchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          166 PKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                        .+..........++  ..++..+    .|+.+|++.|.+.+++
T Consensus       147 --~~~~~~~~~~~~~~--~vSA~~g----~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         147 --KFEVPLSEIDKVFI--PISAKFG----DNIERLKNRIFEVIRE  183 (184)
T ss_dssp             --HHTCCGGGHHHHEE--ECCTTTC----TTHHHHHHHHHHHHHH
T ss_pred             --HhcccccccCCeEE--EEECCCC----CCHHHHHHHHHHHccC
Confidence              00000000011222  2333332    7999999999999886

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=3.1e-22  Score=154.44  Aligned_cols=168  Identities=12%  Similarity=0.110  Sum_probs=104.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      .|+|+|++|||||||+|+|+|......  ...+.|+...+.......+..+.+|||||+.............+...    
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~----   76 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIA--PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRH----   76 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEEC--CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHH----
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCcee--ccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHH----
Confidence            599999999999999999999876333  33455555555444445667899999999875422211122223232    


Q ss_pred             CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcE
Q 024985          101 KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRR  180 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (259)
                      ...++++++++|..............++.........+|+++|+||+|+...  ...++         +.+.+...+..+
T Consensus        77 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~--~~~~~---------~~~~~~~~~~~~  145 (180)
T d1udxa2          77 IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKA---------LADALAREGLAV  145 (180)
T ss_dssp             HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHH---------HHHHHHTTTSCE
T ss_pred             HHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhH--HHHHH---------HHHHHHhcCCeE
Confidence            3456899999998633322222333333322222233599999999999865  33332         222333334444


Q ss_pred             EEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          181 VLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       181 ~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      +.+  ++..+    .|+.+|++.|.++++..
T Consensus       146 ~~i--SA~tg----~gid~L~~~i~~~l~~~  170 (180)
T d1udxa2         146 LPV--SALTG----AGLPALKEALHALVRST  170 (180)
T ss_dssp             EEC--CTTTC----TTHHHHHHHHHHHHHTS
T ss_pred             EEE--EcCCC----CCHHHHHHHHHHHHhhc
Confidence            444  33333    79999999999998754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=6.3e-21  Score=148.83  Aligned_cols=171  Identities=16%  Similarity=0.247  Sum_probs=106.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHH--HHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFV--SKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~--~~~~~   94 (259)
                      ..-++|+|+|++|||||||+|+|+|...........+.|.......    ....+.++|+||...........  ...+.
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI----INDELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE----ETTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccc----ccccceEEEEEeeccccccccccchhhhHH
Confidence            3446899999999999999999998764322222334444433332    23456789999987655444322  22233


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .........++++++|+|++.+++..+..+++.+.. .+    .|+++|+||+|+.+.  ....++..     .+++.+.
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~-~~----~piivv~NK~D~~~~--~~~~~~~~-----~~~~~l~  164 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-YG----IPVIVIATKADKIPK--GKWDKHAK-----VVRQTLN  164 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSCG--GGHHHHHH-----HHHHHHT
T ss_pred             hhhhccccchhhhhhhhhcccccccccccccccccc-cc----CcceechhhccccCH--HHHHHHHH-----HHHHHhc
Confidence            334445667899999999988899999999998876 34    399999999999865  44444332     2333332


Q ss_pred             HcCC-cEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          175 LCEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       175 ~~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .-.. .++.++  +..+    .|+++|++.|.+++.
T Consensus       165 ~~~~~~~~~~S--A~~~----~gi~el~~~i~~~l~  194 (195)
T d1svia_         165 IDPEDELILFS--SETK----KGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CCTTSEEEECC--TTTC----TTHHHHHHHHHHHHT
T ss_pred             ccCCCCEEEEe--CCCC----CCHHHHHHHHHHHhC
Confidence            2222 333333  3333    789999999988763

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=1.8e-21  Score=150.69  Aligned_cols=168  Identities=15%  Similarity=0.122  Sum_probs=102.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      .|+|+|++|||||||+|+|+|.....  ....++|+..........++..+.++||||+.............+...+.. 
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~--~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~-   79 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKI--ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER-   79 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEE--SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH-
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCce--ecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHH-
Confidence            69999999999999999999987632  334566666655555545677899999999753222222233344333333 


Q ss_pred             CCCccEEEEEEeCCC--CCCHhHHHH-HHHHHHHhccc-ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985          101 KDGIHAVLLVFSVRN--RFSEEGGAA-IHSLESLFGKK-VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus       101 ~~~~~~il~v~d~~~--~~~~~~~~~-l~~l~~~~~~~-~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                         ++.++++++...  .....+... ........... ..+|+++|+||+|+...  .           ..+..+.+..
T Consensus        80 ---~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~--~-----------~~~~~~~~~~  143 (185)
T d1lnza2          80 ---TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--A-----------ENLEAFKEKL  143 (185)
T ss_dssp             ---CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--H-----------HHHHHHHHHC
T ss_pred             ---hhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH--H-----------HHHHHHHHHh
Confidence               377888887652  222222222 22222222221 34689999999998754  1           1233444444


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      .....+|..++.++    .|+.+|++.|.+.+++.
T Consensus       144 ~~~~~v~~iSA~~g----~Gi~~L~~~i~~~L~~~  174 (185)
T d1lnza2         144 TDDYPVFPISAVTR----EGLRELLFEVANQLENT  174 (185)
T ss_dssp             CSCCCBCCCSSCCS----STTHHHHHHHHHHHTSC
T ss_pred             ccCCcEEEEECCCC----CCHHHHHHHHHHhhhhC
Confidence            43333444444443    79999999999988653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=9.9e-21  Score=144.65  Aligned_cols=164  Identities=19%  Similarity=0.223  Sum_probs=101.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh--HHHHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS--EFVSKEIVKCIG   98 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~--~~~~~~~~~~~~   98 (259)
                      +|+++|++|||||||+|+|+|....... ...++|.......+. ..+..+.++||||+.......  .......    .
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~-~~~~~t~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~----~   75 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVE-WYGKTFKLVDTCGVFDNPQDIISQKMKEVT----L   75 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEE-ETTEEEEEEECTTTTSSGGGCCCHHHHHHH----H
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceec-ccCceeecccccccc-ccccccccccccceeeeecccccccccccc----c
Confidence            6999999999999999999997753222 234455544444333 566789999999987543211  1122222    2


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN  178 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (259)
                      .....+|+++++++.+.+....+..++..+.. .+.    |+++|+||+|+...  ...+         ...++.+.-..
T Consensus        76 ~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~-~~~----pviiv~NK~Dl~~~--~~~~---------~~~~~~~~~~~  139 (171)
T d1mkya1          76 NMIREADLVLFVVDGKRGITKEDESLADFLRK-STV----DTILVANKAENLRE--FERE---------VKPELYSLGFG  139 (171)
T ss_dssp             HHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH-HTC----CEEEEEESCCSHHH--HHHH---------THHHHGGGSSC
T ss_pred             cccccCcEEEEeeccccccccccccccccccc-ccc----cccccchhhhhhhh--hhhH---------HHHHHHhcCCC
Confidence            23456799999999988888888888887775 343    99999999998743  1111         11122222122


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHHHHHHHhC
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVNSVILENG  212 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~~  212 (259)
                      .++.+++  ..    ..|+.+|++.|.+.+++..
T Consensus       140 ~~i~iSA--k~----g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         140 EPIPVSA--EH----NINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             SCEECBT--TT----TBSHHHHHHHHHHHHHHTT
T ss_pred             CeEEEec--CC----CCCHHHHHHHHHHhCCCCC
Confidence            3333333  22    3789999999999888754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.83  E-value=1.6e-20  Score=145.24  Aligned_cols=171  Identities=18%  Similarity=0.250  Sum_probs=104.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHH-----HHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEF-----VSKE   92 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~-----~~~~   92 (259)
                      ..++|+++|++|||||||+|+|+|........ ..++|..+....+. .++..+.++||||+.........     ....
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~-~~~t~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVF-IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-CC------CCEEEE-ETTEEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeec-ccccccccceeeec-cCCceeeeeccCCccccccccccccccchhHH
Confidence            45899999999999999999999987643332 23344444433333 67889999999998632211100     0112


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985           93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI  172 (259)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (259)
                      +...+    ..+|++++|+|++.+.......++..+.. .+    .|+++|+||+|+.........++..     .+++.
T Consensus        85 ~~~~~----~~~dvii~v~d~~~~~~~~~~~~~~~~~~-~~----~~~i~v~nK~D~~~~~~~~~~~~~~-----~~~~~  150 (186)
T d1mkya2          85 VVDSI----EKADVVVIVLDATQGITRQDQRMAGLMER-RG----RASVVVFNKWDLVVHREKRYDEFTK-----LFREK  150 (186)
T ss_dssp             HHHHH----HHCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CEEEEEEECGGGSTTGGGCHHHHHH-----HHHHH
T ss_pred             HHHHH----hcCCEEEEeecccccchhhHHHHHHHHHH-cC----CceeeeccchhhhcchhhhhhhHHH-----HHHHH
Confidence            22222    34599999999987888888888777765 33    3999999999987653222332221     22333


Q ss_pred             HHHcCC-cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          173 LQLCEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       173 ~~~~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ...++. .++.++  +..    ..|+.+|++.|.+.+..
T Consensus       151 ~~~~~~~~i~~vS--a~~----g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         151 LYFIDYSPLIFTS--ADK----GWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             CGGGTTSCEEECB--TTT----TBSHHHHHHHHHHHHHH
T ss_pred             hcccCCCeEEEEe--CCC----CCCHHHHHHHHHHHHHh
Confidence            333333 233333  332    37899999999887765

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.83  E-value=9.3e-20  Score=140.31  Aligned_cols=166  Identities=19%  Similarity=0.264  Sum_probs=104.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCC-----CCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAG-----SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE   92 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~-----~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~   92 (259)
                      ...+|+++|++|||||||+|+|++.........     ..+.|......... ..+..+.++||||..           .
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~d~~g~~-----------~   71 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFK-LENYRITLVDAPGHA-----------D   71 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEE-ETTEEEEECCCSSHH-----------H
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccc-cCCcccccccccccc-----------c
Confidence            346899999999999999999997653211110     11222222222222 567789999999932           3


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH
Q 024985           93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI  172 (259)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~  172 (259)
                      +......+...+|++++|+|+..+...++...+..+.. .+.    |+++|+||+|+...  +..+...     ...+.+
T Consensus        72 ~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~-~~~----p~iiv~NKiD~~~~--~~~~~~~-----~~~~~~  139 (179)
T d1wb1a4          72 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FNI----PIIVVITKSDNAGT--EEIKRTE-----MIMKSI  139 (179)
T ss_dssp             HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CBCEEEECTTSSCH--HHHHHHH-----HHHHHH
T ss_pred             cccchhhhhhhccccccccccccccchhhhhhhhhhhh-cCC----cceeccccccccCH--HHHHHHH-----HHHHHH
Confidence            44444555667899999999998888888887777665 443    99999999998865  3332211     123344


Q ss_pred             HHHcCC--cEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          173 LQLCEN--RRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       173 ~~~~~~--~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      .+...+  ...++..++..+    .|+.+|++.|.+.+++.
T Consensus       140 ~~~~~~~~~~~iv~iSA~~g----~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         140 LQSTHNLKNSSIIPISAKTG----FGVDELKNLIITTLNNA  176 (179)
T ss_dssp             HHHSSSGGGCCEEECCTTTC----TTHHHHHHHHHHHHHHS
T ss_pred             HHHhhcCCCCeEEEEEccCC----cCHHHHHHHHHhcCCcc
Confidence            443322  112333344333    79999999999988764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.3e-20  Score=140.97  Aligned_cols=159  Identities=18%  Similarity=0.171  Sum_probs=101.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      .+|+++|++|||||||+|+|++....... ..+++|......... ..+..+.++||||+.+.......   ........
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~---~~~~~~~~   76 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIH-IDGMPLHIIDTAGLREASDEVER---IGIERAWQ   76 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEE-ETTEEEEEEECCCCSCCSSHHHH---HHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEee-cccccccceEeeeee-ccCceeeeccccccccccccchh---HHHHHHHH
Confidence            68999999999999999999998763332 233444444443333 67789999999999875432222   22222233


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR  179 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (259)
                      +...+|++++++|........+...+..+......  ..|+++|+||+|+.... ..+.                .... 
T Consensus        77 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~iilv~NK~Dl~~~~-~~~~----------------~~~~-  136 (161)
T d2gj8a1          77 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPITVVRNKADITGET-LGMS----------------EVNG-  136 (161)
T ss_dssp             HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCEEEEEECHHHHCCC-CEEE----------------EETT-
T ss_pred             HHHhccccceeeccccccchhhhhhhhhhhhhccc--ccceeeccchhhhhhhH-HHHH----------------HhCC-
Confidence            45577999999999866555555555444443332  35999999999986541 1111                1122 


Q ss_pred             EEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          180 RVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      ..++..++..+    .|+++|++.|.+-
T Consensus       137 ~~~~~iSAk~~----~gi~~L~~~l~~~  160 (161)
T d2gj8a1         137 HALIRLSARTG----EGVDVLRNHLKQS  160 (161)
T ss_dssp             EEEEECCTTTC----TTHHHHHHHHHHH
T ss_pred             CcEEEEECCCC----CCHHHHHHHHHhh
Confidence            22344444443    7899999988653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.81  E-value=8.7e-19  Score=132.79  Aligned_cols=159  Identities=13%  Similarity=0.078  Sum_probs=101.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ..+|+++|.+|||||||+|+|.+...  .   ..++|.......+. .++..+.+|||||..           .+.....
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~--~---~~~~t~~~~~~~~~-~~~~~~~~~D~~G~~-----------~~~~~~~   64 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDV--D---TISPTLGFNIKTLE-HRGFKLNIWDVGGQK-----------SLRSYWR   64 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCC--S---SCCCCSSEEEEEEE-ETTEEEEEEEECCSH-----------HHHTTGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCC--C---cccceEeeeeeecc-ccccceeeeecCcch-----------hhhhHHH
Confidence            47899999999999999999998764  1   12334444444444 577899999999932           3444455


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhc--ccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFG--KKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      .....++++++|+|+++..+..+  ....+.....  .....|++||+||+|+.+.  ....+....       ......
T Consensus        65 ~~~~~~~~~i~v~d~~d~~~~~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~-------~~~~~~  133 (165)
T d1ksha_          65 NYFESTDGLIWVVDSADRQRMQD--CQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEA-------LELDSI  133 (165)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-------TTGGGC
T ss_pred             hhhhhhhcceeeeecccchhHHH--HHHhhhhhhhhcccCCCceEEEEeccccccc--cCHHHHHHH-------HHhhhh
Confidence            67788999999999885544333  2222222221  1123599999999998654  222221110       001122


Q ss_pred             CC-cEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          177 EN-RRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       177 ~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .. .+.+|..++..+    .|+.+++++|.+.+.
T Consensus       134 ~~~~~~~~~~Sa~~g----~gv~e~~~~l~~~i~  163 (165)
T d1ksha_         134 RSHHWRIQGCSAVTG----EDLLPGIDWLLDDIS  163 (165)
T ss_dssp             CSSCEEEEECCTTTC----TTHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEEECCCC----CCHHHHHHHHHHHHH
Confidence            22 345677776665    899999998876654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=3.9e-19  Score=135.40  Aligned_cols=162  Identities=12%  Similarity=0.099  Sum_probs=97.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .++|+++|.+|||||||++++++.........+.+.+  .....+.. .....+.+|||||..           .+....
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~wDt~G~e-----------~~~~~~   71 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGID--FKVKTIYRNDKRIKLQIWDTAGQE-----------RYRTIT   71 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEE--EEEEEEEETTEEEEEEEEEECCSG-----------GGHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccc--eeeEEEEeecceEEEEEEECCCch-----------hhHHHH
Confidence            4789999999999999999998766422222222222  22222221 122478999999943           233344


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+..+|++|+|+|+++.-+... ..++..+.....  ...|+++|+||+|.....  ..       .....+.+.+..
T Consensus        72 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~--~v-------~~~~~~~~~~~~  140 (169)
T d3raba_          72 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMEDER--VV-------SSERGRQLADHL  140 (169)
T ss_dssp             HTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC--SCCEEEEEEECTTCGGGC--CS-------CHHHHHHHHHHH
T ss_pred             HHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccC--CcceEEEEEeeccccccc--cc-------chhhhHHHHHHc
Confidence            556788999999999984322221 233333333222  234889999999976431  11       112344555555


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +.++  +..++.++    .|+.++++.+.+.+.+
T Consensus       141 ~~~~--~e~Sak~g----~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         141 GFEF--FEASAKDN----INVKQTFERLVDVICE  168 (169)
T ss_dssp             TCEE--EECBTTTT----BSHHHHHHHHHHHHHT
T ss_pred             CCEE--EEecCCCC----cCHHHHHHHHHHHHhh
Confidence            5543  44444443    7899999988877653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=5.3e-20  Score=138.82  Aligned_cols=154  Identities=21%  Similarity=0.258  Sum_probs=96.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCCh-H-HHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS-E-FVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~-~-~~~~~~~~~~   97 (259)
                      .+|+|+|++|||||||+|+|+|....... ..++.|......... ..+..+.++||||+....... + .....+...+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVT-DIPGTTRDVISEEIV-IRGILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCC-CSSCCSSCSCCEEEE-ETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeee-ccccccccceeEEEE-eCCeeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            47999999999999999999988753322 233444444333333 577899999999986433211 0 1112232223


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                          ..+|++++|+|++++....+..+...+.       ..++++++||+|..+.  ...+            ++....+
T Consensus        79 ----~~ad~ii~v~d~~~~~~~~~~~~~~~~~-------~~~~i~~~~k~d~~~~--~~~~------------~~~~~~~  133 (160)
T d1xzpa2          79 ----EKADIVLFVLDASSPLDEEDRKILERIK-------NKRYLVVINKVDVVEK--INEE------------EIKNKLG  133 (160)
T ss_dssp             ----HHCSEEEEEEETTSCCCHHHHHHHHHHT-------TSSEEEEEEECSSCCC--CCHH------------HHHHHHT
T ss_pred             ----HhCCEEEEEEeCCCCcchhhhhhhhhcc-------cccceeeeeeccccch--hhhH------------HHHHHhC
Confidence                3459999999999777777655544332       2389999999998865  2222            2222222


Q ss_pred             --CcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          178 --NRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       178 --~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                        ..++..++.  .    ..|+.+|++.|.+
T Consensus       134 ~~~~~~~vSA~--~----g~gi~~L~~~I~k  158 (160)
T d1xzpa2         134 TDRHMVKISAL--K----GEGLEKLEESIYR  158 (160)
T ss_dssp             CSTTEEEEEGG--G----TCCHHHHHHHHHH
T ss_pred             CCCcEEEEECC--C----CCCHHHHHHHHHh
Confidence              233334332  2    3789999988754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.80  E-value=3.4e-19  Score=142.26  Aligned_cols=115  Identities=15%  Similarity=0.194  Sum_probs=80.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEE-----------------eeCCcEEEEEeCCCCCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTM-----------------LKDGQVVNVIDTPGLFDS   82 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~-----------------~~~~~~~~liDTPG~~~~   82 (259)
                      +.|+++|++++|||||+|+|++.......  ..+.|.........                 ...+..+.++||||..+.
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f   83 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASRE--AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchhee--cCceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence            56999999999999999999876432111  11222211111110                 134558999999996543


Q ss_pred             CCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           83 SADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ..           ....+...+|++|+|+|+..++...+...+..+.. .+.    |++||+||+|+...
T Consensus        84 ~~-----------~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~-~~~----p~iivlNK~D~~~~  137 (227)
T d1g7sa4          84 TT-----------LRKRGGALADLAILIVDINEGFKPQTQEALNILRM-YRT----PFVVAANKIDRIHG  137 (227)
T ss_dssp             TT-----------SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH-TTC----CEEEEEECGGGSTT
T ss_pred             cc-----------cchhcccccceEEEEEecccCcccchhHHHHHhhc-CCC----eEEEEEECccCCCc
Confidence            21           22334567899999999998999999999998877 343    99999999999865

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.79  E-value=4.6e-19  Score=137.92  Aligned_cols=170  Identities=14%  Similarity=0.176  Sum_probs=111.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC------cc--------cccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR------AF--------KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~------~~--------~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~   83 (259)
                      +..+|+++|..++|||||+++|++..      .+        .......+.|.+.....+. ..+..+.++||||..   
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~-~~~~~~~~iDtPGh~---   77 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-TAARHYAHTDCPGHA---   77 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-CSSCEEEEEECSSHH---
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEE-eceeeEEeecCcchH---
Confidence            45799999999999999999997421      00        0011123566666555554 567899999999932   


Q ss_pred             CChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC
Q 024985           84 ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP  163 (259)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~  163 (259)
                              .+...+......+|++|+|+|+..+..+++.+.+..+.....    +|+||++||+|+..+  +..-+.+. 
T Consensus        78 --------~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~----~~iIv~iNK~D~~~~--~~~~~~i~-  142 (196)
T d1d2ea3          78 --------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGV----EHVVVYVNKADAVQD--SEMVELVE-  142 (196)
T ss_dssp             --------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTC----CCEEEEEECGGGCSC--HHHHHHHH-
T ss_pred             --------HHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcC----CcEEEEEeccccccc--HHHHHHHH-
Confidence                    455555566778899999999999999999888888877433    389999999998864  33322222 


Q ss_pred             CCCchHHHHHHHcCCc---EEEEeCCCcc------cccchhHHHHHHHHHHHHHH
Q 024985          164 ECPKPLKEILQLCENR---RVLFDNKTKD------AATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       164 ~~~~~l~~~~~~~~~~---~~~~~~~~~~------~~~~~~~i~eLl~~i~~~~~  209 (259)
                         ..++.++..++..   ..++..++..      ......++.+|++.|.+.++
T Consensus       143 ---~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         143 ---LEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             ---HHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             ---HHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence               1455666655431   1122222111      11223578888888877654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=4.9e-19  Score=138.86  Aligned_cols=119  Identities=16%  Similarity=0.215  Sum_probs=86.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcc-----------cccC----CCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAF-----------KSKA----GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS   82 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~-----------~~~~----~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~   82 (259)
                      +..+|+++|+.++|||||+++|+.....           ....    ...+.|.+.....+. .++..+.||||||+.+.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~-~~~~~i~iiDtPGh~df   80 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-TAKRHYSHVDCPGHADY   80 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE-CSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEE-eCCeEEEEEeCCCchhh
Confidence            4579999999999999999999732100           0000    001566666666665 57889999999997642


Q ss_pred             CCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           83 SADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                             ...+..    +...+|++|+|+|+..++..++.+.+..+.. +|.   ++++|++||+|+.+.
T Consensus        81 -------~~~~~~----~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~-~gi---~~iiv~iNK~D~~~~  135 (204)
T d2c78a3          81 -------IKNMIT----GAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV---PYIVVFMNKVDMVDD  135 (204)
T ss_dssp             -------HHHHHH----HHTTCSSEEEEEETTTCCCHHHHHHHHHHHH-TTC---CCEEEEEECGGGCCC
T ss_pred             -------HHHHHH----HHHHCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEEecccCCC
Confidence                   223333    3456699999999998999999999988877 443   257888999999764

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=3.2e-19  Score=153.57  Aligned_cols=174  Identities=17%  Similarity=0.083  Sum_probs=105.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCC---CCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGS---SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~---~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      .+++|+++|++|||||||+|+|+|......+..+   .++|+....+  ...++..+.+|||||++......+.+...+ 
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~--~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~-  131 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY--KHPNIPNVVFWDLPGIGSTNFPPDTYLEKM-  131 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEE--ECSSCTTEEEEECCCGGGSSCCHHHHHHHT-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeee--eccCCCeEEEEeCCCcccccccHHHHHHHh-
Confidence            4689999999999999999999996643333222   2344444433  234556799999999987665544433221 


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCc-------ccHHhhhCCCCCc
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDND-------ETLEDYLGPECPK  167 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~-------~~~~~~~~~~~~~  167 (259)
                           ....+|++|++.|  .+++..+..+++.+.+ .+.    |+++|+||+|......       ...+..+.. ...
T Consensus       132 -----~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~-~~k----~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~-ir~  198 (400)
T d1tq4a_         132 -----KFYEYDFFIIISA--TRFKKNDIDIAKAISM-MKK----EFYFVRTKVDSDITNEADGEPQTFDKEKVLQD-IRL  198 (400)
T ss_dssp             -----TGGGCSEEEEEES--SCCCHHHHHHHHHHHH-TTC----EEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH-HHH
T ss_pred             -----hhhcceEEEEecC--CCCCHHHHHHHHHHHH-cCC----CEEEEEeCcccccchhhhcccccccHHHHHHH-HHH
Confidence                 2334578777766  3788999999998887 443    9999999999652210       001111110 001


Q ss_pred             hHHHHHHHc---CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          168 PLKEILQLC---ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       168 ~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      .....++..   ..+++.++.....    ..++.+|.+.+.+.+++.
T Consensus       199 ~~~~~l~~~~~~~~~vflvS~~~~~----~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         199 NCVNTFRENGIAEPPIFLLSNKNVC----HYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             HHHHHHHHTTCSSCCEEECCTTCTT----STTHHHHHHHHHHHSCGG
T ss_pred             HHHHHHHHcCCCCCCEEEecCCccc----ccCHHHHHHHHHHHhHHH
Confidence            112222222   2244444443322    258999999988887654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.77  E-value=5.3e-18  Score=129.69  Aligned_cols=162  Identities=14%  Similarity=0.111  Sum_probs=98.3

Q ss_pred             CCCCCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHH
Q 024985           13 TSPSNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE   92 (259)
Q Consensus        13 ~s~~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~   92 (259)
                      .++.+...+|+++|++|||||||+|+|.+.......     .+.......+. ..+..+.++|+||...           
T Consensus        10 ~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-----~~~~~~~~~i~-~~~~~~~i~d~~g~~~-----------   72 (176)
T d1fzqa_          10 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQ-SQGFKLNVWDIGGQRK-----------   72 (176)
T ss_dssp             SSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEE-ETTEEEEEEECSSCGG-----------
T ss_pred             hCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-----eeeeeeEEEec-cCCeeEeEeecccccc-----------
Confidence            455667799999999999999999999987752211     11112222223 4677899999999542           


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHH
Q 024985           93 IVKCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKE  171 (259)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~  171 (259)
                      +.......+..+|++++|+|+++..+..+ ..++..+..... ....|++||+||+|+...  .....+..        .
T Consensus        73 ~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~-~~~~pillv~nK~Dl~~~--~~~~~~~~--------~  141 (176)
T d1fzqa_          73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA--APASEIAE--------G  141 (176)
T ss_dssp             GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHH--------H
T ss_pred             chhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhc-cCCCeEEEEEEecccccc--ccHHHHHH--------H
Confidence            22222334567799999999985544433 122222221111 123599999999999865  22221111        0


Q ss_pred             H-HHHcCC-cEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          172 I-LQLCEN-RRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       172 ~-~~~~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      + ...+.. .+.+|..++..+    .|+.|++++|.+
T Consensus       142 ~~~~~~~~~~~~~~~~SA~tg----~gv~e~~~~l~~  174 (176)
T d1fzqa_         142 LNLHTIRDRVWQIQSCSALTG----EGVQDGMNWVCK  174 (176)
T ss_dssp             TTGGGCCSSCEEEEECCTTTC----TTHHHHHHHHHH
T ss_pred             HHHHHHHhcCCEEEEEeCCCC----CCHHHHHHHHHh
Confidence            0 112222 344666666655    899999998754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.5e-18  Score=131.12  Aligned_cols=161  Identities=14%  Similarity=0.116  Sum_probs=98.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      .++|+|+|.+|||||||++++++......  ..+..+.......+. ..+  ..+.+|||||..           .+...
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~--~~~~~~~~~~~~~~~-~~~~~~~l~i~Dt~G~e-----------~~~~~   70 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVE-INGEKVKLQIWDTAGQE-----------RFRSI   70 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCCSEEEEEEEEE-ETTEEEEEEEEEECCSG-----------GGHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCc--ccccccceEEEEEEE-ECCEEEEEEEEECCCch-----------hhHHH
Confidence            37999999999999999999997664222  122233333333333 334  368899999942           33444


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ....+.++|++++|+|.+++-+.. ...++..+.+....  ..|+++|.||+|........         ....+.+.+.
T Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~ilvgnK~D~~~~~~v~---------~~~~~~~~~~  139 (171)
T d2ew1a1          71 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN--KVITVLVGNKIDLAERREVS---------QQRAEEFSEA  139 (171)
T ss_dssp             HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCSSC---------HHHHHHHHHH
T ss_pred             HHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccc--cccEEEEEeecccccccchh---------hhHHHHHHHh
Confidence            456778999999999988443322 23444444443332  34899999999976431111         1234455555


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHH-HHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLV-NSVILE  210 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i-~~~~~~  210 (259)
                      .+..+  +..++.++    .|+.+++..| .+++.+
T Consensus       140 ~~~~~--~~~SAktg----~gV~e~f~~l~~~l~~~  169 (171)
T d2ew1a1         140 QDMYY--LETSAKES----DNVEKLFLDLACRLISE  169 (171)
T ss_dssp             HTCCE--EECCTTTC----TTHHHHHHHHHHHHHHH
T ss_pred             CCCEE--EEEccCCC----CCHHHHHHHHHHHHHHh
Confidence            55543  44454444    7899997754 445543

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.4e-18  Score=132.39  Aligned_cols=157  Identities=15%  Similarity=0.071  Sum_probs=92.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-eC--CcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-KD--GQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~--~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      .++|+++|.+|||||||++++++......    ...|....+..... .+  ...+.+|||||..           ....
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~----~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~-----------~~~~   67 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE-----------KFGG   67 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CC----EEEETTEEEEEEEECBTTCCEEEEEEECTTHH-----------HHSS
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcc----cccceecccccccccccccccccccccccccc-----------ccce
Confidence            47899999999999999999987764221    11222222221111 22  2479999999932           3333


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      .......++|++++|+|++++-+... ..++..+.+..   ...|+++|+||+|+...  ..         .........
T Consensus        68 ~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~--~~---------~~~~~~~~~  133 (170)
T d1i2ma_          68 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDR--KV---------KAKSIVFHR  133 (170)
T ss_dssp             CGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHH---CSCCEEEEEECCCCSCS--CC---------TTTSHHHHS
T ss_pred             ecchhcccccchhhccccccccccchhHHHHHHHhhcc---CCCceeeecchhhhhhh--hh---------hhHHHHHHH
Confidence            34456778999999999985544332 33444444422   23599999999998654  11         111223333


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..+.+  +|..++..+    .++.+++..|.+.+..
T Consensus       134 ~~~~~--~~e~Sak~~----~~v~e~f~~l~~~l~~  163 (170)
T d1i2ma_         134 KKNLQ--YYDISAKSN----YNFEKPFLWLARKLIG  163 (170)
T ss_dssp             SCSSE--EEEEBTTTT----BTTTHHHHHHHHHHHT
T ss_pred             HcCCE--EEEEeCCCC----CCHHHHHHHHHHHHcc
Confidence            33333  445554444    7899999888765543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.3e-18  Score=129.44  Aligned_cols=158  Identities=16%  Similarity=0.050  Sum_probs=88.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ++|+++|.+|||||||++.+.+.....  ..+.......  ..+. .++  ..+.+|||||....           ....
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~--~~~~~~~~~~--~~i~-~~~~~~~l~i~D~~g~e~~-----------~~~~   65 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGP--EAEAAGHTYD--RSIV-VDGEEASLMVYDIWEQDGG-----------RWLP   65 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-----------CEEEE--EEEE-ETTEEEEEEEEECC------------------CH
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCC--cCCeeeeeec--ceee-ccccccceeeeeccccccc-----------ceec
Confidence            689999999999999999999876411  1111111111  1122 334  47889999995432           1222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+.++|++|+|+|++++-+... ..++..+....+ ....|+++|.||+|+....  .+       .....+.+....
T Consensus        66 ~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~--~v-------~~~~~~~~~~~~  135 (168)
T d2gjsa1          66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSR--EV-------SVDEGRACAVVF  135 (168)
T ss_dssp             HHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGGGC--CS-------CHHHHHHHHHHH
T ss_pred             ccchhhhhhhceeccccccccccccccccchhhcccc-cccceEEEeecccchhhhc--ch-------hHHHHHHHHHhc
Confidence            334567899999999985544333 234444444322 2234899999999976431  11       112334455555


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      +..+  +..++..+    .++.+++..+.+.+.
T Consensus       136 ~~~~--~e~Sak~~----~~v~~~f~~l~~~i~  162 (168)
T d2gjsa1         136 DCKF--IETSAALH----HNVQALFEGVVRQIR  162 (168)
T ss_dssp             TSEE--EECBTTTT----BSHHHHHHHHHHHHH
T ss_pred             CCEE--EEEeCCCC----cCHHHHHHHHHHHHH
Confidence            5543  44444443    789999888765443

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.77  E-value=4e-18  Score=130.21  Aligned_cols=158  Identities=12%  Similarity=0.096  Sum_probs=99.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ++...+|+++|.+|||||||++++.+......     ..|......... .....+.+|||||...           ...
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~i~D~~g~~~-----------~~~   71 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-----IPTVGFNVETVT-YKNVKFNVWDVGGQDK-----------IRP   71 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-----EEETTEEEEEEE-ETTEEEEEEEESCCGG-----------GHH
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-----cceeeeeEEEee-ccceeeEEecCCCcch-----------hhh
Confidence            35568999999999999999999987764221     123223333222 5667999999999652           233


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHH-
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEI-  172 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~-  172 (259)
                      .....+..++++++|+|+++.-+...  ..+++......  ....|++||+||+|+.+.  ....+.         ... 
T Consensus        72 ~~~~~~~~~~~ii~v~D~s~~~~~~~--~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~--~~~~~i---------~~~~  138 (173)
T d1e0sa_          72 LWRHYYTGTQGLIFVVDCADRDRIDE--ARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEI---------QEKL  138 (173)
T ss_dssp             HHGGGTTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHH---------HHHT
T ss_pred             HHHhhhcccceEEEEEecccchhHHH--HHHHHHHHhhhcccccceeeeeeeccccccc--ccHHHH---------HHHH
Confidence            44556788999999999984333222  22233332211  123599999999998754  222111         111 


Q ss_pred             -HHHcCC-cEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          173 -LQLCEN-RRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       173 -~~~~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                       +..+.. .+.++..++..+    +|+.|++++|.+.
T Consensus       139 ~~~~~~~~~~~~~e~SA~tg----~gv~e~~~~l~~~  171 (173)
T d1e0sa_         139 GLTRIRDRNWYVQPSCATSG----DGLYEGLTWLTSN  171 (173)
T ss_dssp             TGGGCCSSCEEEEECBTTTT----BTHHHHHHHHHHH
T ss_pred             HHHHHHhCCCEEEEeeCCCC----cCHHHHHHHHHHh
Confidence             122222 345666776655    8999999998764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=3.2e-18  Score=133.22  Aligned_cols=164  Identities=16%  Similarity=0.137  Sum_probs=97.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      -.++|+|+|.+|||||||++.+++.........+.+.+...  ..+.. .....+.+|||||......           .
T Consensus         5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~--~~i~~~~~~~~l~i~Dt~G~e~~~~-----------~   71 (194)
T d2bcgy1           5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKI--KTVELDGKTVKLQIWDTAGQERFRT-----------I   71 (194)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEE--EEEEETTEEEEEEEECCTTTTTTTC-----------C
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEE--EEEEEeeEEEEEEEEECCCchhhHH-----------H
Confidence            35799999999999999999998766422222222222222  22221 1234788999999654321           1


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ....+..+|++|+|+|++++.+... ..+...+.+....  ..|+++|.||+|+........         .........
T Consensus        72 ~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~~~~~~~---------~~~~~~~~~  140 (194)
T d2bcgy1          72 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDKRVVEY---------DVAKEFADA  140 (194)
T ss_dssp             CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCH---------HHHHHHHHH
T ss_pred             HHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccC--CceEEEEEeccccccccchhH---------HHHhhhhhc
Confidence            2345678899999999985433333 2233334433332  349999999999875421111         122333333


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      .+..  ++..++.++    .++.+++..+.+.+.++
T Consensus       141 ~~~~--~~e~SAk~g----~gi~e~f~~l~~~i~~~  170 (194)
T d2bcgy1         141 NKMP--FLETSALDS----TNVEDAFLTMARQIKES  170 (194)
T ss_dssp             TTCC--EEECCTTTC----TTHHHHHHHHHHHHHHH
T ss_pred             cCcc--eEEEecCcC----ccHHHHHHHHHHHHHHH
Confidence            3334  344454444    78999998887766543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.2e-18  Score=131.94  Aligned_cols=157  Identities=14%  Similarity=0.110  Sum_probs=91.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ++|+++|.+|||||||+|++++........  ++.+.......+. .++  ..+.+|||||-......           .
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~i~d~~g~e~~~~~-----------~   70 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESK--STIGVEFATRSIQ-VDGKTIKAQIWDTAGQERYRRI-----------T   70 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEE-ETTEEEEEEEEECSSGGGTTCC-----------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccc--ccccceeeeEEEE-ECCEEEEEEecccCCcHHHHHH-----------H
Confidence            689999999999999999998776422222  2222222222222 333  37889999995432221           1


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHh-HHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEE-GGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ......+|++|+|+|.+++-+.. ...++..+.+..+..  .|+++|.||+|+.+.....         ...........
T Consensus        71 ~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~--~piilvgnK~Dl~~~~~~~---------~~~~~~~~~~~  139 (175)
T d2f9la1          71 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN--IVIMLVGNKSDLRHLRAVP---------TDEARAFAEKN  139 (175)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSC---------HHHHHHHHHHT
T ss_pred             HHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCC--CcEEEEEeeecccccccch---------HHHHHHhhccc
Confidence            12235679999999998443322 244555565544433  3999999999976431111         11223333333


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      ...  ++..++..+    .|+.++++.+.+.
T Consensus       140 ~~~--~~e~Sa~~g----~~i~e~f~~l~~~  164 (175)
T d2f9la1         140 NLS--FIETSALDS----TNVEEAFKNILTE  164 (175)
T ss_dssp             TCE--EEECCTTTC----TTHHHHHHHHHHH
T ss_pred             Cce--EEEEecCCC----cCHHHHHHHHHHH
Confidence            333  444555444    6788887665443

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.8e-18  Score=129.96  Aligned_cols=161  Identities=15%  Similarity=0.127  Sum_probs=96.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+|+++|.+|||||||++++++..... ..  . .|...........++.  .+.+|||+|.....        .   .
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~-~~--~-~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--------~---~   66 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRE-SY--I-PTVEDTYRQVISCDKSICTLQITDTTGSHQFP--------A---M   66 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCS-SC--C-CCSCEEEEEEEEETTEEEEEEEEECCSCSSCH--------H---H
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCC-cc--C-cceeeccccceeeccccceecccccccccccc--------c---c
Confidence            5789999999999999999999876422 11  1 2222222222223443  67889999966421        1   1


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      .......+|++++|+|++++-+... ..++..+.+..+.....|+++|.||+|+....  .+       .....+.+.+.
T Consensus        67 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~--~v-------~~~e~~~~~~~  137 (171)
T d2erxa1          67 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSR--EV-------QSSEAEALART  137 (171)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGC--CS-------CHHHHHHHHHH
T ss_pred             ccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccc--cc-------cHHHHHHHHHH
Confidence            1122335599999999985433322 34555555544434445999999999975431  11       11234455566


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .+..  +|..++.++    .++.+++..|.+++.
T Consensus       138 ~~~~--~~e~Sak~~----~~v~e~f~~l~~~~~  165 (171)
T d2erxa1         138 WKCA--FMETSAKLN----HNVKELFQELLNLEK  165 (171)
T ss_dssp             HTCE--EEECBTTTT----BSHHHHHHHHHHTCC
T ss_pred             cCCe--EEEEcCCCC----cCHHHHHHHHHHHHH
Confidence            5544  445554444    789999988776543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.5e-18  Score=128.71  Aligned_cols=159  Identities=13%  Similarity=0.059  Sum_probs=97.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ++|+++|.+|||||||+|++++.......  .++.+......... .++  ..+.+|||||....           ....
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~i~d~~g~~~~-----------~~~~   66 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMY-LEDRTIRLQLWDTAGQERF-----------RSLI   66 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEE-CSSCEEEEEEEEECCSGGG-----------GGGH
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCcc--ccceeeeccceeec-cCCCceeeeecccCCcchh-----------ccch
Confidence            47999999999999999999977642221  12222222222222 233  47889999996532           1112


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ...+..+|++++|+|.+++.+... ..++..+....+.  ..|+++|.||+|+.......         ......+.+..
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~~~~~---------~~~~~~~~~~~  135 (164)
T d1yzqa1          67 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS--DVIIMLVGNKTDLADKRQVS---------IEEGERKAKEL  135 (164)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECTTCGGGCCSC---------HHHHHHHHHHT
T ss_pred             HHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCC--CceEEEEecccchhhhhhhh---------HHHHHHHHHHc
Confidence            234557799999999985543332 3444444444433  34999999999976431111         12344455555


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      +..  +|..++..+    .++.++++.|.+.++
T Consensus       136 ~~~--~~e~SAk~g----~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         136 NVM--FIETSAKAG----YNVKQLFRRVAAALP  162 (164)
T ss_dssp             TCE--EEECCTTTC----TTHHHHHHHHHHHSC
T ss_pred             CCE--EEEecCCCC----cCHHHHHHHHHHhhC
Confidence            544  455555554    799999999887654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=8e-18  Score=128.60  Aligned_cols=168  Identities=14%  Similarity=0.090  Sum_probs=93.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      -++|+++|.+|||||||+|++++.........+.+.+...............+.++||||...           ......
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-----------~~~~~~   70 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQSLGV   70 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchh-----------hhhHHH
Confidence            368999999999999999999876643222222222222222211111224688999999532           223334


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      .....++++++|+|.++..+... ..++..+....+..  ...|+++|+||+|+...  ...      ......+++...
T Consensus        71 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~--~~~------v~~~~~~~~~~~  142 (175)
T d1ky3a_          71 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES--KKI------VSEKSAQELAKS  142 (175)
T ss_dssp             CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG--GCC------SCHHHHHHHHHH
T ss_pred             HHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhh--hcc------hhHHHHHHHHHH
Confidence            56778899999999985544322 34455554433221  23499999999997643  110      011234455666


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHH-HHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNS-VILE  210 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~-~~~~  210 (259)
                      .+... ++..++..+    .|+.+++..|.+ ++++
T Consensus       143 ~~~~~-~~e~SA~~g----~gv~e~f~~l~~~~l~~  173 (175)
T d1ky3a_         143 LGDIP-LFLTSAKNA----INVDTAFEEIARSALQQ  173 (175)
T ss_dssp             TTSCC-EEEEBTTTT----BSHHHHHHHHHHHHHHH
T ss_pred             cCCCe-EEEEeCCCC----cCHHHHHHHHHHHHHhc
Confidence            55322 333343333    789999888765 4443

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=8.1e-18  Score=128.52  Aligned_cols=159  Identities=14%  Similarity=0.114  Sum_probs=93.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      .++|+++|.+|||||||+|++.+.... .... +..........+. .++  ..+.+|||||..           .+...
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~-~~~~-~t~~~~~~~~~~~-~~~~~~~~~i~D~~G~~-----------~~~~~   70 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFK-DDSN-HTIGVEFGSKIIN-VGGKYVKLQIWDTAGQE-----------RFRSV   70 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCC-TTCC-CCSEEEEEEEEEE-ETTEEEEEEEEEECCSG-----------GGHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCC-cccc-cccccceeeEEEE-ecCcceeEEEEECCCch-----------hhhhh
Confidence            478999999999999999999876642 2211 1111111211111 222  378999999943           23333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      .......+|++++|+|.++.-+... ..++..+......  ..|+++|.||+|+......         .......+...
T Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piivv~nK~D~~~~~~~---------~~~~~~~~~~~  139 (174)
T d2bmea1          71 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDADREV---------TFLEASRFAQE  139 (174)
T ss_dssp             HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCS---------CHHHHHHHHHH
T ss_pred             HHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCC--ceEEEEEEecccccchhch---------hhhHHHHHHHh
Confidence            4556778999999999984422222 2334444443333  3499999999997533110         11123344444


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      .+-.  ++..++..+    .++.+++..+.+.+
T Consensus       140 ~~~~--~~e~Sak~~----~gi~e~f~~l~~~i  166 (174)
T d2bmea1         140 NELM--FLETSALTG----ENVEEAFVQCARKI  166 (174)
T ss_dssp             TTCE--EEECCTTTC----TTHHHHHHHHHHHH
T ss_pred             CCCE--EEEeeCCCC----cCHHHHHHHHHHHH
Confidence            3333  455555444    78999988775544

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.75  E-value=5.4e-18  Score=130.48  Aligned_cols=163  Identities=15%  Similarity=0.101  Sum_probs=99.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      .....+|+++|.+|||||||+++|.+.......     .|......... ..+..+.+|||||....           ..
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~-----~t~~~~~~~~~-~~~~~~~i~D~~g~~~~-----------~~   76 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVTTK-----PTIGFNVETLS-YKNLKLNVWDLGGQTSI-----------RP   76 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-----SSTTCCEEEEE-ETTEEEEEEEEC----C-----------CT
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCccc-----cccceEEEEEe-eCCEEEEEEeccccccc-----------ch
Confidence            456799999999999999999999877653221     12222222223 56789999999996532           22


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      .....+..+|++++|+|+++..+..+  ...++......  ....|++||+||+|+...  .+.++....     +  -.
T Consensus        77 ~~~~~~~~~~~ii~v~d~~d~~s~~~--~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~-----~--~~  145 (182)
T d1moza_          77 YWRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKE-----L--NL  145 (182)
T ss_dssp             TGGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHH-----T--TT
T ss_pred             hHHhhhccceeEEEEeeecccccchh--HHHHHHHHHHhhccCCcceEEEEEeeccccc--cCHHHHHHH-----H--HH
Confidence            23445678899999999986655543  22333332221  123599999999998653  222221110     0  00


Q ss_pred             HHcC-CcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          174 QLCE-NRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       174 ~~~~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..+. ..+.+|..++..+    .|+.++++.|.+.+.+
T Consensus       146 ~~~~~~~~~~~e~SA~~g----~gv~e~~~~l~~~i~~  179 (182)
T d1moza_         146 VELKDRSWSIVASSAIKG----EGITEGLDWLIDVIKE  179 (182)
T ss_dssp             TTCCSSCEEEEEEBGGGT----BTHHHHHHHHHHHHHH
T ss_pred             HHHhhCCCEEEEEECCCC----CCHHHHHHHHHHHHHH
Confidence            1111 2344566666554    8999999999888765

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=7.4e-18  Score=127.80  Aligned_cols=160  Identities=17%  Similarity=0.141  Sum_probs=97.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+|+++|.+|||||||+|++++........    .|....+.......+  ..+.+||+||....           ...
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-----------~~~   67 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYD----PTIEDSYRKQVVIDGETCLLDILDTAGQEEY-----------SAM   67 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCC----CCSEEEEEEEEEETTEEEEEEEEEECCCGGG-----------HHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccC----CccceeeccceeeeceeeeeeeeeccCcccc-----------ccc
Confidence            4789999999999999999999876422111    111111111111233  37899999996532           111


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      .......++++++|+|.+++.+... ..++..+.+..+. ...|+++|.||+|+.... ..         ....+.+.+.
T Consensus        68 ~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~-~~---------~~~~~~~~~~  136 (166)
T d1ctqa_          68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKCDLAART-VE---------SRQAQDLARS  136 (166)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC-SSCCEEEEEECTTCSCCC-SC---------HHHHHHHHHH
T ss_pred             hhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCC-CCCeEEEEeccccccccc-cc---------HHHHHHHHHH
Confidence            1222335599999999985543332 4455555554332 235999999999976431 11         1234455555


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .+..  +|..++.++    .|+.+++..|.+.+.+
T Consensus       137 ~~~~--~~e~Sak~g----~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         137 YGIP--YIETSAKTR----QGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             HTCC--EEECCTTTC----TTHHHHHHHHHHHHHT
T ss_pred             hCCe--EEEEcCCCC----cCHHHHHHHHHHHHHh
Confidence            5544  455555554    7999999998877764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=2e-18  Score=131.95  Aligned_cols=161  Identities=14%  Similarity=0.092  Sum_probs=78.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      .++|+++|.+|||||||++++++.......  .+..+.......+. .++  ..+.+|||||..           .+...
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~l~i~D~~G~e-----------~~~~~   71 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTIE-LDGKRIKLQIWDTAGQE-----------RFRTI   71 (173)
T ss_dssp             EEEEEEECCCCC----------------CH--HHHHCEEEEEEEEE-ETTEEEEEEEEEC--------------------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcc--CccccceEEEEEEE-ECCEEEEEEEEECCCch-----------hhHHH
Confidence            478999999999999999999976642111  11222233333333 344  367889999943           23333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ...+..++|++|+|+|++++.+... ..++..+......  ..|+++|.||.|.........         .........
T Consensus        72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~~k~D~~~~~~~~~---------~~~~~~~~~  140 (173)
T d2fu5c1          72 TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVNDKRQVSK---------ERGEKLALD  140 (173)
T ss_dssp             CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEEC--CCSCCCSCH---------HHHHHHHHH
T ss_pred             HHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccC--CceEEEEEecccchhhcccHH---------HHHHHHHHh
Confidence            4556788999999999985544333 2333444433332  349999999999876521111         123334444


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      .+.+  +|..++.++    .|+.+++..|.+.+..
T Consensus       141 ~~~~--~~e~Sa~~g----~gv~e~f~~l~~~i~~  169 (173)
T d2fu5c1         141 YGIK--FMETSAKAN----INVENAFFTLARDIKA  169 (173)
T ss_dssp             HTCE--EEECCC-------CCHHHHHHHHHHHHHH
T ss_pred             cCCE--EEEEeCCCC----CCHHHHHHHHHHHHHH
Confidence            4444  444554443    7899999887776543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=6.8e-18  Score=128.02  Aligned_cols=158  Identities=14%  Similarity=0.136  Sum_probs=94.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      .++|+|+|.+|||||||++++++......  .++..+......... .++.  .+.+|||||.....        .+   
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~l~i~D~~g~~~~~--------~~---   69 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMAD--CPHTIGVEFGTRIIE-VSGQKIKLQIWDTAGQERFR--------AV---   69 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSS--CTTSCCCCEEEEEEE-ETTEEEEEEEEECTTGGGTC--------HH---
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCc--ccccccccceeEEEE-ECCEEEEEEEeccCCchhHH--------HH---
Confidence            37899999999999999999997764222  122223222222222 3443  78999999954321        11   


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      .......+|++++|+|+++.-+... ..++..+.+....  ..|+++|.||+|+.......         ......+.+.
T Consensus        70 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~~~~~---------~~~~~~~~~~  138 (166)
T d1z0fa1          70 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQRDVT---------YEEAKQFAEE  138 (166)
T ss_dssp             HHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSC---------HHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccc--cceEEEEcccccchhhcccH---------HHHHHHHHHH
Confidence            1122345699999999985433222 3444555443333  34899999999975431111         1234455555


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      .+.+  ++..++.++    .|+.+++..|.+.
T Consensus       139 ~~~~--~~e~Saktg----~~v~e~f~~i~~~  164 (166)
T d1z0fa1         139 NGLL--FLEASAKTG----ENVEDAFLEAAKK  164 (166)
T ss_dssp             TTCE--EEECCTTTC----TTHHHHHHHHHHH
T ss_pred             cCCE--EEEEeCCCC----CCHHHHHHHHHHH
Confidence            4543  455555544    7899998876553

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=4.2e-17  Score=125.35  Aligned_cols=175  Identities=11%  Similarity=0.139  Sum_probs=99.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ....++|+|+|++|||||||+|+|++........ ..+.|...... .....+......++++.................
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS-KTPGRTQLINL-FEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEE-EEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeec-ccccceeeccc-eecccccceeeeecccccchhhhhhhhhhhhhh
Confidence            3567999999999999999999999987533322 22223222222 222445555555555544333333322223333


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ........++.++++.+............+..+... .    .++++++||+|+...  ........     .+++.+..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~v~~k~D~~~~--~~~~~~~~-----~~~~~l~~  158 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS-N----IAVLVLLTKADKLAS--GARKAQLN-----MVREAVLA  158 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-T----CCEEEEEECGGGSCH--HHHHHHHH-----HHHHHHGG
T ss_pred             hhhhhhhheeEEEEeecccccchhHHHHHHHHhhhc-c----ccccchhhhhhccCH--HHHHHHHH-----HHHHHHHh
Confidence            333334455677788888767777777777766653 2    389999999999865  33333322     34444554


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ......++..++..+    .|+++|++.|.+++
T Consensus       159 ~~~~~~~i~vSA~~g----~Gid~L~~~i~~~~  187 (188)
T d1puia_         159 FNGDVQVETFSSLKK----QGVDKLRQKLDTWF  187 (188)
T ss_dssp             GCSCEEEEECBTTTT----BSHHHHHHHHHHHH
T ss_pred             hCCCCcEEEEeCCCC----CCHHHHHHHHHHHh
Confidence            554444444444443    89999999998875

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.75  E-value=8.7e-18  Score=127.16  Aligned_cols=158  Identities=14%  Similarity=0.091  Sum_probs=94.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ..+|+++|++|||||||+|+|.+......    ...|.......+. .++..+.+|||||..           .+.....
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~----~~~T~~~~~~~~~-~~~~~~~i~D~~G~~-----------~~~~~~~   65 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNED----MIPTVGFNMRKIT-KGNVTIKLWDIGGQP-----------RFRSMWE   65 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCSEEEEEEE-ETTEEEEEEEECCSH-----------HHHTTHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCc----ccccceeeeeeee-eeeEEEEEeeccccc-----------ccccccc
Confidence            47999999999999999999987764221    1224333444344 567899999999932           1222222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc-
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC-  176 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  176 (259)
                      .....+|++++|+|+++..+... ..++..+.+.. .....|+++|+||.|+...  ....+.... ..      ...+ 
T Consensus        66 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pi~lv~nK~Dl~~~--~~~~~i~~~-~~------~~~~~  135 (164)
T d1zd9a1          66 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP-QLQGIPVLVLGNKRDLPGA--LDEKELIEK-MN------LSAIQ  135 (164)
T ss_dssp             HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTC--CCHHHHHHH-TT------GGGCC
T ss_pred             ccccccchhhcccccccccccchhhhhhhhhhhhh-cccCCcEEEEEeccccchh--hhHHHHHHH-HH------HHHHH
Confidence            34567899999999985433322 22222222211 1123599999999998654  222222110 00      0111 


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      .....++..++..+    .|+.+++++|.+
T Consensus       136 ~~~~~~~e~Sa~~g----~gv~e~~~~l~~  161 (164)
T d1zd9a1         136 DREICCYSISCKEK----DNIDITLQWLIQ  161 (164)
T ss_dssp             SSCEEEEECCTTTC----TTHHHHHHHHHH
T ss_pred             hCCCEEEEEeCcCC----cCHHHHHHHHHH
Confidence            12344566666554    899999988765

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3e-17  Score=124.50  Aligned_cols=160  Identities=11%  Similarity=0.097  Sum_probs=95.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+|+|+|.+|||||||++++++.........+.+.  ........ .++  ..+.+|||+|...           ....
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~--~~~~~~~~-~~~~~~~~~~~d~~g~~~-----------~~~~   68 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGA--SFLTKKLN-IGGKRVNLAIWDTAGQER-----------FHAL   68 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSC--EEEEEEEE-SSSCEEEEEEEECCCC-----------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCccccccccc--chheeeec-cCCccceeeeeccCCcce-----------eccc
Confidence            368999999999999999999876642221111111  12221122 233  4789999999543           2223


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ....+.++|++++|+|++++-+... ..+++.+......  ..|+++|.||+|+....  .+       .....+.+.+.
T Consensus        69 ~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~--~~~~ilvgnK~Dl~~~~--~v-------~~~e~~~~a~~  137 (167)
T d1z08a1          69 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEKER--HV-------SIQEAESYAES  137 (167)
T ss_dssp             -CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGGGC--CS-------CHHHHHHHHHH
T ss_pred             chhhccCCceeEEEEeCCchhHHHhhhhhhhhccccccc--ccceeeecccccccccc--cc-------chHHHHHHHHH
Confidence            3456788999999999985544333 3344444433332  34889999999976541  11       12234556666


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .+..++  ..++..+    .++.+++..|.+.+-
T Consensus       138 ~~~~~~--e~Sak~~----~~v~e~F~~l~~~i~  165 (167)
T d1z08a1         138 VGAKHY--HTSAKQN----KGIEELFLDLCKRMI  165 (167)
T ss_dssp             TTCEEE--EEBTTTT----BSHHHHHHHHHHHHH
T ss_pred             cCCeEE--EEecCCC----cCHHHHHHHHHHHHh
Confidence            555543  4444333    789999988776553

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=2.2e-18  Score=130.46  Aligned_cols=157  Identities=18%  Similarity=0.123  Sum_probs=95.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|.+|||||||+|++++.........+.+.+.....  .. ..+  ..+.+|||||........           
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~--~~-~~~~~~~~~i~d~~g~~~~~~~~-----------   68 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQ--IQ-VNDEDVRLMLWDTAGQEEFDAIT-----------   68 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEE--EE-ETTEEEEEEEECCTTGGGTTCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceee--ee-ecCceeeeeeeccCCccchhhhh-----------
Confidence            68999999999999999999866532221122222222211  11 233  378999999966433211           


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ......+|++++|+|++++-+... ..+++.+.+..+   ..|+++|+||+|+...  ..+       .....+.+.+..
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~iilVgnK~Dl~~~--~~v-------~~~~~~~~~~~~  136 (164)
T d1z2aa1          69 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLDD--SCI-------KNEEAEGLAKRL  136 (164)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC---SCCEEEEEECGGGGGG--CSS-------CHHHHHHHHHHH
T ss_pred             hhhhccCceEEEEEeccchhhhhhcccccccccccCC---CceEEEeeccCCcccc--eee-------eehhhHHHHHHc
Confidence            122457799999999985443332 234444544332   3599999999998644  111       122345666666


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      +.+  ++..++..+    .|+.++++.|.+.+
T Consensus       137 ~~~--~~e~Sak~g----~~v~e~f~~l~~~~  162 (164)
T d1z2aa1         137 KLR--FYRTSVKED----LNVSEVFKYLAEKH  162 (164)
T ss_dssp             TCE--EEECBTTTT----BSSHHHHHHHHHHH
T ss_pred             CCE--EEEeccCCC----cCHHHHHHHHHHHH
Confidence            654  344444443    78999998875543

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.6e-17  Score=124.23  Aligned_cols=164  Identities=18%  Similarity=0.132  Sum_probs=98.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+++|.+|||||||++++++.... ...  .+++.......+. .++.  .+.+|||||..........    + 
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~-~~~--~~t~~~~~~~~~~-~~~~~~~l~~~d~~g~~~~~~~~~~----~-   74 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFV-SDY--DPTIEDSYTKICS-VDGIPARLDILDTAGQEEFGAMREQ----Y-   74 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCC-SSC--CTTCCEEEEEEEE-ETTEEEEEEEEECCCTTTTSCCHHH----H-
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCC-ccc--ccccccceeeEec-cCCeeeeeeccccccccccccccch----h-
Confidence            45689999999999999999999876642 222  1222222222222 3443  6888999998765432211    1 


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                            +..+|++|+|+|.++..+... ..++..+.+..+. ...|+++|.||+|+......         .......+.
T Consensus        75 ------~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~~~~~---------~~~~~~~~~  138 (173)
T d2fn4a1          75 ------MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQRQV---------PRSEASAFG  138 (173)
T ss_dssp             ------HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGGCCS---------CHHHHHHHH
T ss_pred             ------hccceeeeeecccccccccchhhhhhHHHHHHhcc-CCCceEEEEEeechhhcccc---------chhhhhHHH
Confidence                  224599999999985433332 2344444433221 23499999999997643100         112344455


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      +..+..  +|..++.++    .|+.++++.+.+.+.+.
T Consensus       139 ~~~~~~--~~e~Sak~g----~gv~e~f~~l~~~i~k~  170 (173)
T d2fn4a1         139 ASHHVA--YFEASAKLR----LNVDEAFEQLVRAVRKY  170 (173)
T ss_dssp             HHTTCE--EEECBTTTT----BSHHHHHHHHHHHHHHH
T ss_pred             HhcCCE--EEEEeCCCC----cCHHHHHHHHHHHHHHH
Confidence            554443  444555444    78999999988877654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=7.3e-18  Score=127.78  Aligned_cols=159  Identities=12%  Similarity=0.101  Sum_probs=94.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ++|+++|.+|||||||++++++........  ++.+.......+. .++  ..+.+|||||......           ..
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~--~t~~~~~~~~~i~-~~~~~~~~~i~Dt~G~~~~~~-----------~~   68 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFI--TTIGIDFKIKTVD-INGKKVKLQIWDTAGQERFRT-----------IT   68 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEE-SSSCEEEEEEECCTTGGGTSC-----------CC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccC--CccceeEEEEEEE-ECCEEEEEEEEECCCchhhHH-----------HH
Confidence            689999999999999999999876422211  2222223333333 233  3677899999543221           11


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEGG-AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ......+|++++|+|.+++-+.... .+...+....  ....|++++.+|.|.....  ..        ....+++....
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~i~~~~k~d~~~~~--~~--------~~~~~~~~~~~  136 (166)
T d1g16a_          69 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA--NDEAQLLLVGNKSDMETRV--VT--------ADQGEALAKEL  136 (166)
T ss_dssp             HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCTTCC--SC--------HHHHHHHHHHH
T ss_pred             HHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccc--cCcceeeeecchhhhhhhh--hh--------HHHHHHHHHhc
Confidence            2235678999999999854333332 2222233222  2234889999999976541  11        22345566666


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +..++..++.  .+    .|+.++++.+.+.+.+
T Consensus       137 ~~~~~~~Sa~--~~----~~v~e~f~~l~~~i~~  164 (166)
T d1g16a_         137 GIPFIESSAK--ND----DNVNEIFFTLAKLIQE  164 (166)
T ss_dssp             TCCEEECBTT--TT----BSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCC--CC----CCHHHHHHHHHHHHHh
Confidence            6555444433  33    7899999988877754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.8e-17  Score=123.23  Aligned_cols=161  Identities=14%  Similarity=0.094  Sum_probs=94.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+|+++|.+|||||||++++++........ .+..........+. ..+.  .+.+|||||...           +...
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~i~Dt~G~e~-----------~~~~   72 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLD-VDGVKVKLQMWDTAGQER-----------FRSV   72 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCCCSCEEEEEEEE-ETTEEEEEEEEECCCC-----------------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccc-cceeeeeeEEEEEE-ecCcEEEEEEEECCCchh-----------hHHH
Confidence            4689999999999999999998766422221 12222222222222 3443  788999999542           2223


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      .......+|++++|+|.+++.+... ..++..+......  ..|+++|.||+|......-.         ......+.+.
T Consensus        73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~~k~d~~~~~~v~---------~~~~~~~~~~  141 (170)
T d2g6ba1          73 THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDSAHERVVK---------REDGEKLAKE  141 (170)
T ss_dssp             --CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECCSTTSCCCSC---------HHHHHHHHHH
T ss_pred             HHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCC--CceEEEEEeeechhhccccc---------HHHHHHHHHH
Confidence            3445667899999999984433322 2222233332332  34899999999987542111         1234455666


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .+.++  |..++.++    .|+.++++.|.+.+.
T Consensus       142 ~~~~~--~e~Sak~g----~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         142 YGLPF--METSAKTG----LNVDLAFTAIAKELK  169 (170)
T ss_dssp             HTCCE--EECCTTTC----TTHHHHHHHHHHHHH
T ss_pred             cCCEE--EEEeCCCC----cCHHHHHHHHHHHcC
Confidence            66554  44444443    789999988776543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.73  E-value=2.6e-17  Score=128.14  Aligned_cols=167  Identities=14%  Similarity=0.220  Sum_probs=99.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccc-cCCCCCcceeeEEEEEE----------------------eeCCcEEEE
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKS-KAGSSGVTKTCEMQRTM----------------------LKDGQVVNV   73 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~-~~~~~~~T~~~~~~~~~----------------------~~~~~~~~l   73 (259)
                      ++..+|+++|..++|||||+|+|+|...... .....+.|....+....                      ...+..+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            3457899999999999999999997532111 11112233222211110                      011235899


Q ss_pred             EeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           74 IDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF-SEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        74 iDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      +||||.           ..+...+......+|++++|+|+..+. .....+.+..+.. ++.   .+++|++||+|+.+.
T Consensus        83 iDtPGh-----------~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~-~~~---~~iiv~inK~D~~d~  147 (195)
T d1kk1a3          83 IDAPGH-----------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IGQ---KNIIIAQNKIELVDK  147 (195)
T ss_dssp             EECSSH-----------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTC---CCEEEEEECGGGSCH
T ss_pred             eccchh-----------hhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHH-hcC---ccceeeeecccchhh
Confidence            999993           245555555566779999999998665 4455666666655 343   268889999998854


Q ss_pred             CcccHHhhhCCCCCchHHHHHHHcCC-cEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          153 NDETLEDYLGPECPKPLKEILQLCEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                        ....+..     ..+...+..... .+.++..++..+    .|+.+|++.|.+.+|
T Consensus       148 --~~~~~~~-----~~~~~~~~~~~~~~~~iIpiSA~~G----~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         148 --EKALENY-----RQIKEFIEGTVAENAPIIPISALHG----ANIDVLVKAIEDFIP  194 (195)
T ss_dssp             --HHHHHHH-----HHHHHHHTTSTTTTCCEEECBTTTT----BSHHHHHHHHHHHSC
T ss_pred             --HHHHHHH-----HHHHHHhccccCCCCeEEEEECCCC----CCHHHHHHHHHHHCc
Confidence              2222211     123444443332 122333444333    789999999988654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.9e-18  Score=128.84  Aligned_cols=160  Identities=13%  Similarity=0.088  Sum_probs=96.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      .++|+++|.+|||||||++++++.........+.  .......... ..+  ..+.+|||||....           ...
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~--~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~-----------~~~   71 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTI--GAAFLTQTVC-LDDTTVKFEIWDTAGQERY-----------HSL   71 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCS--SEEEEEEEEE-ETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccc--ccccccceee-ccceEEEEEeccCCCchhh-----------hhh
Confidence            3689999999999999999999766422221112  2222222222 222  47899999995432           112


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ....+.++|++++|+|.++..+... ..+...+.+.....  .|+++|.||+|+.....-+         .+..+.+...
T Consensus        72 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~v~---------~e~~~~~~~~  140 (170)
T d1r2qa_          72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANKRAVD---------FQEAQSYADD  140 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSC---------HHHHHHHHHH
T ss_pred             HHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCC--ceEEeeccccccccccccc---------HHHHHHHHHh
Confidence            2224567899999999984433332 34444454444433  4999999999976431111         1234445555


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .+..  ++..++..+    .++.+++..|.+.+.
T Consensus       141 ~~~~--~~e~SAk~g----~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_         141 NSLL--FMETSAKTS----MNVNEIFMAIAKKLP  168 (170)
T ss_dssp             TTCE--EEECCTTTC----TTHHHHHHHHHHTSC
T ss_pred             cCCE--EEEeeCCCC----CCHHHHHHHHHHHHh
Confidence            4433  455555554    789999998876544

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.7e-17  Score=123.89  Aligned_cols=163  Identities=18%  Similarity=0.114  Sum_probs=94.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ....+|+|+|.+|||||||++++++.... ...  .++........+. .++  ..+.+|||||......       .. 
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~-~~~--~~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~-------~~-   70 (171)
T d2erya1           3 QEKYRLVVVGGGGVGKSALTIQFIQSYFV-TDY--DPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGA-------MR-   70 (171)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHSCCC-SSC--CTTCCEEEEEEEE-ETTEEEEEEEEECC----CCH-------HH-
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCC-ccc--Ccccccceeeeee-ecccccccccccccccccccc-------cc-
Confidence            34579999999999999999999876532 221  1112222222222 334  3799999999765321       11 


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                         ......+|++++|+|.+++-+... ..++..+.+..+ ....|++||.||+|+.....-.         ......+.
T Consensus        71 ---~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilvgnK~Dl~~~~~v~---------~~~~~~~~  137 (171)
T d2erya1          71 ---EQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKD-RDEFPMILIGNKADLDHQRQVT---------QEEGQQLA  137 (171)
T ss_dssp             ---HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCSEEEEEECTTCTTSCSSC---------HHHHHHHH
T ss_pred             ---cccccccceEEEeeccccccchhhHHHHhHHHHhhcc-cCCCCEEEEEeccchhhhccch---------HHHHHHHH
Confidence               112234599999999985433322 233333333222 2235899999999976441111         12344556


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      +..+..+  +..++.++    .|+.+++..|.+.+.+
T Consensus       138 ~~~~~~~--~e~Sak~~----~~i~e~f~~l~~~i~k  168 (171)
T d2erya1         138 RQLKVTY--MEASAKIR----MNVDQAFHELVRVIRK  168 (171)
T ss_dssp             HHTTCEE--EECBTTTT----BSHHHHHHHHHHHHHH
T ss_pred             HHcCCEE--EEEcCCCC----cCHHHHHHHHHHHHHH
Confidence            6655543  44444443    7899999998877754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3e-17  Score=125.68  Aligned_cols=165  Identities=16%  Similarity=0.108  Sum_probs=98.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+|+++|.+|||||||++++++...... ..   .|...........++  ..+.+|||||...           +...
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~-~~---~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~-----------~~~~   66 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEV-YV---PTVFENYVADIEVDGKQVELALWDTAGLED-----------YDRL   66 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSS-CC---CCSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GTTT
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCC-cC---CceeeeccccccccccceeeeccccCccch-----------hccc
Confidence            36899999999999999999987764221 11   121111111111233  3799999999643           2223


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHh-hh---CC-CCCchH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLED-YL---GP-ECPKPL  169 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~-~~---~~-~~~~~l  169 (259)
                      ....+.++|++|+|+|++++-+...  ..++..+.. ...  ..|++||.||+|+...  ....+ ..   .. -.....
T Consensus        67 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~--~~piilvgnK~Dl~~~--~~~~~~~~~~~~~~v~~~e~  141 (177)
T d1kmqa_          67 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCP--NVPIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEG  141 (177)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HST--TSCEEEEEECGGGTTC--HHHHHHHHHTTCCCCCHHHH
T ss_pred             chhhcccchhhhhhcccchhHHHHHHHHHHHHHHHH-hCC--CCceEEeeecccccch--hhHHHHHHHhhcccccHHHH
Confidence            3456778999999999985433322  233444444 333  2499999999998765  22211 11   00 011233


Q ss_pred             HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      +.+.+..+. ..+|..++..+    .|+.++++.+.+.+
T Consensus       142 ~~~a~~~~~-~~~~E~SAkt~----~gi~e~F~~i~~~~  175 (177)
T d1kmqa_         142 RDMANRIGA-FGYMECSAKTK----DGVREVFEMATRAA  175 (177)
T ss_dssp             HHHHHHTTC-SEEEECCTTTC----TTHHHHHHHHHHHH
T ss_pred             HHHHHHcCC-cEEEEecCCCC----cCHHHHHHHHHHHH
Confidence            455555443 34566665554    89999998876654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.6e-17  Score=126.86  Aligned_cols=159  Identities=13%  Similarity=0.058  Sum_probs=94.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      .+|+|+|.+|||||||++++++....... . ++.+........... ....+.++|++|.......           ..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------~~   70 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH-D-LTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI-----------TR   70 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC-----------CH
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCc-c-cceeeccceeeeeeeeeEEEEEeecccCccchhhH-----------HH
Confidence            68999999999999999999877642221 1 222222222222211 2247899999996543221           12


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      .....+|++++|+|++++-+... ..++..+.+..+.+  .|+++|.||+|.......         .......+.+..+
T Consensus        71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~--~piilv~nK~D~~~~~~~---------~~~~~~~~a~~~~  139 (173)
T d2a5ja1          71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLESRRDV---------KREEGEAFAREHG  139 (173)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCS---------CHHHHHHHHHHHT
T ss_pred             HHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCC--CeEEEEecCCchhhhhhh---------HHHHHHHHHHHcC
Confidence            23456799999999985443332 34455555544433  499999999997543111         1223445555555


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      .++  +..++..+    .|+.+++..+.+.+
T Consensus       140 ~~~--~e~Sa~tg----~~V~e~f~~i~~~i  164 (173)
T d2a5ja1         140 LIF--METSAKTA----CNVEEAFINTAKEI  164 (173)
T ss_dssp             CEE--EEECTTTC----TTHHHHHHHHHHHH
T ss_pred             CEE--EEecCCCC----CCHHHHHHHHHHHH
Confidence            544  44444443    78999888776644

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=2e-17  Score=125.47  Aligned_cols=160  Identities=14%  Similarity=0.095  Sum_probs=94.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+|+|.+|||||||+|++.+.........+.+.+.  ...... .++  ..+.+|||||.....           .
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~--~~~~~~-~~~~~~~~~i~d~~g~~~~~-----------~   68 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASF--MTKTVQ-YQNELHKFLIWDTAGLERFR-----------A   68 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEE--EEEEEE-ETTEEEEEEEEEECCSGGGG-----------G
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCccccccccccc--cccccc-ccccccceeeeecCCchhhh-----------H
Confidence            357999999999999999999997764222111111111  111111 222  367899999965321           1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ........+|++|+|+|++++-+... ..++..+.....  ...|+++|+||+|+....  ..       .....+.+..
T Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~--~v-------~~~~~~~~~~  137 (167)
T d1z0ja1          69 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTDVR--EV-------MERDAKDYAD  137 (167)
T ss_dssp             GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGGGC--CS-------CHHHHHHHHH
T ss_pred             HHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccC--CcceEEEecccchhcccc--ch-------hHHHHHHHHH
Confidence            12233557799999999984433332 233333333333  245999999999986431  11       1123445555


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ..+..  ++..++..+    .++.+++..|.+.+
T Consensus       138 ~~~~~--~~e~SAk~~----~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         138 SIHAI--FVETSAKNA----ININELFIEISRRI  165 (167)
T ss_dssp             HTTCE--EEECBTTTT----BSHHHHHHHHHHHC
T ss_pred             HcCCE--EEEEecCCC----CCHHHHHHHHHHhC
Confidence            55543  455555444    78999998877654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.6e-17  Score=127.30  Aligned_cols=162  Identities=14%  Similarity=0.106  Sum_probs=97.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      +..+|+++|.+|||||||+|+|.+.......  ....+.......+. .++  ..+.+|||||.......          
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~----------   72 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPEL--AATIGVDFKVKTIS-VDGNKAKLAIWDTAGQERFRTL----------   72 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCCSEEEEEEEEE-ETTEEEEEEEEEECSSGGGCCS----------
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCcc--ccceeecceeEEEE-EeccccEEEEEECCCchhhHHH----------
Confidence            3478999999999999999999977642221  22222222222222 233  37999999996543221          


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                       ......++|++++|+|++++.+... ..++..+.. .......|++++.||.|.....          -.......+.+
T Consensus        73 -~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~~i~~~~nk~d~~~~~----------v~~~~~~~~~~  140 (177)
T d1x3sa1          73 -TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELET-YCTRNDIVNMLVGNKIDKENRE----------VDRNEGLKFAR  140 (177)
T ss_dssp             -HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTT-CCSCSCCEEEEEEECTTSSSCC----------SCHHHHHHHHH
T ss_pred             -HHHHHhcCCEEEEEEECCCccccccchhhhhhhcc-cccccceeeEEEeecccccccc----------ccHHHHHHHHH
Confidence             1123457799999999884333222 223333322 1223446899999999976431          01123445555


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      ..+.  .+|..++..+    .|+.++++.+.+.+.+
T Consensus       141 ~~~~--~~~e~Sa~tg----~gv~e~f~~l~~~l~~  170 (177)
T d1x3sa1         141 KHSM--LFIEASAKTC----DGVQCAFEELVEKIIQ  170 (177)
T ss_dssp             HTTC--EEEECCTTTC----TTHHHHHHHHHHHHHT
T ss_pred             HCCC--EEEEEeCCCC----CCHHHHHHHHHHHHcc
Confidence            5554  3556665554    7999999877665554

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=2.8e-17  Score=126.62  Aligned_cols=162  Identities=13%  Similarity=0.055  Sum_probs=91.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      ++|+|+|.+|||||||++++++.........+.+.+......... .....+.++||||......           ....
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~-----------~~~~   70 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTMQIWDTAGQERFQS-----------LGVA   70 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESS-SCEEEEEEEEECSSGGGSC-----------SCCG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeC-CceEEEEeeecCCcccccc-----------cccc
Confidence            689999999999999999999766422211122222222222111 2234788999999653221           1133


Q ss_pred             cCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHc
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLC  176 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (259)
                      ....+|++++|+|.++..+... ..+++.+.......  ...|+++|+||+|+...  ...        ...........
T Consensus        71 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~--~~~--------~~~~~~~~~~~  140 (184)
T d1vg8a_          71 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVA--------TKRAQAWCYSK  140 (184)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSC--------HHHHHHHHHHT
T ss_pred             cccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc--chh--------HHHHHHHHHHh
Confidence            4567899999999974333222 34444444433211  12499999999997643  111        11222333332


Q ss_pred             CCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          177 ENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      .. ..++..++..+    .|+.++++.+.+.+
T Consensus       141 ~~-~~~~e~Sak~~----~gI~e~f~~l~~~i  167 (184)
T d1vg8a_         141 NN-IPYFETSAKEA----INVEQAFQTIARNA  167 (184)
T ss_dssp             TS-CCEEECBTTTT----BSHHHHHHHHHHHH
T ss_pred             cC-CeEEEEcCCCC----cCHHHHHHHHHHHH
Confidence            22 22333333333    78999998875543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.4e-17  Score=127.48  Aligned_cols=168  Identities=15%  Similarity=0.209  Sum_probs=102.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      ..|+|+|.+|||||||+|+|+|......  +..+.|+..............+.++|+||.....  ..............
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   81 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISIT--SRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE--KRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEEC--CCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH--HHHHHHHHTCCTTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceee--ccCCCceEEEEEeeeecCCceeEeecCCCceecc--hhhhhhhhhhcccc
Confidence            5799999999999999999999886333  3344455454444444667788899999975321  11111111111223


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCc
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCENR  179 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (259)
                      ....+++++++.|.. +.......+...+.+.     ..|.++|+||+|..... ..+..        ....+....+..
T Consensus        82 ~~~~~~~~l~~~d~~-~~~~~~~~~~~~l~~~-----~~~~i~v~~k~d~~~~~-~~~~~--------~~~~~~~~~~~~  146 (179)
T d1egaa1          82 SIGDVELVIFVVEGT-RWTPDDEMVLNKLREG-----KAPVILAVNKVDNVQEK-ADLLP--------HLQFLASQMNFL  146 (179)
T ss_dssp             CCCCEEEEEEEEETT-CCCHHHHHHHHHHHSS-----SSCEEEEEESTTTCCCH-HHHHH--------HHHHHHTTSCCS
T ss_pred             chhhcceeEEEEecC-ccchhHHHHHHHhhhc-----cCceeeeeeeeeccchh-hhhhh--------HhhhhhhhcCCC
Confidence            345678889999987 5444444444444331     23889999999988652 11111        233444444432


Q ss_pred             EEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          180 RVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      . +|..++..+    .|+++|++.|.+.+++.
T Consensus       147 ~-~~~vSA~~g----~gi~~L~~~i~~~lpe~  173 (179)
T d1egaa1         147 D-IVPISAETG----LNVDTIAAIVRKHLPEA  173 (179)
T ss_dssp             E-EEECCTTTT----TTHHHHHHHHHTTCCBC
T ss_pred             C-EEEEeCcCC----CCHHHHHHHHHHhCCCC
Confidence            2 333444333    79999999999888654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=6.3e-17  Score=122.67  Aligned_cols=160  Identities=14%  Similarity=0.101  Sum_probs=92.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+|+|.+|||||||++++++........   ++.......... .++  ..+.+||++|.....    .   ..  
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~---~t~~~~~~~~~~-~~~~~~~l~~~d~~g~~~~~----~---~~--   68 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYD---PTIEDFYRKEIE-VDSSPSVLEILDTAGTEQFA----S---MR--   68 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCC---TTCCEEEEEEEE-ETTEEEEEEEEECCCTTCCH----H---HH--
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccC---Cceeeeeeeeee-cCcceEeeccccCCCccccc----c---ch--
Confidence            35799999999999999999999776422211   111111111111 333  378889999965321    1   11  


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                        .....++|++++|+|++++-+... ..+...+..... ....|+++|+||+|+.......         ........+
T Consensus        69 --~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~---------~~~~~~~~~  136 (167)
T d1kaoa_          69 --DLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVS---------SSEGRALAE  136 (167)
T ss_dssp             --HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSC---------HHHHHHHHH
T ss_pred             --HHHhhcccceeeeeeecchhhhhhhhchhhhhhhhcc-CCCCCEEEEEEccchhhcccch---------HHHHHHHHH
Confidence              112335599999999985443333 233333333222 2234899999999976431111         113334455


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ..+..+  |..++..+    .|+.+++..|.+.+
T Consensus       137 ~~~~~~--~e~Sak~g----~~i~e~f~~i~~~i  164 (167)
T d1kaoa_         137 EWGCPF--METSAKSK----TMVDELFAEIVRQM  164 (167)
T ss_dssp             HHTSCE--EEECTTCH----HHHHHHHHHHHHHH
T ss_pred             HcCCeE--EEECCCCC----cCHHHHHHHHHHHH
Confidence            555554  44444433    89999998876544

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.1e-16  Score=121.20  Aligned_cols=160  Identities=16%  Similarity=0.139  Sum_probs=97.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+|+|.+|||||||++++++.... ...   ..|....+......++.  .+.+|||||......-          
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~-~~~---~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~----------   68 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFV-DSY---DPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF----------   68 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCC-SCC---CSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC----------
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCC-ccc---CcceecccceEEecCcEEEEeeecccccccccccc----------
Confidence            3479999999999999999999876532 111   11222222211123443  6788999997653321          


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                       ....+..+|++|+|+|++++-+... ..++..+.+..+. ...|+++|.||+|+....  .+       .....+.+.+
T Consensus        69 -~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~r--~v-------~~~~~~~~a~  137 (167)
T d1xtqa1          69 -PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMER--VI-------SYEEGKALAE  137 (167)
T ss_dssp             -CGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCS-SCCCEEEEEECTTCGGGC--CS-------CHHHHHHHHH
T ss_pred             -cchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccc-cccceeeecccccccccc--ch-------hHHHHHHHHH
Confidence             1234568899999999985533333 3344455554442 234999999999976431  11       0123445555


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ..+..  +|..++.++    .++.++++.|...+
T Consensus       138 ~~~~~--~~e~Sak~~----~~v~~~f~~li~~~  165 (167)
T d1xtqa1         138 SWNAA--FLESSAKEN----QTAVDVFRRIILEA  165 (167)
T ss_dssp             HHTCE--EEECCTTCH----HHHHHHHHHHHHHH
T ss_pred             HcCCE--EEEEecCCC----CCHHHHHHHHHHHh
Confidence            55544  445555444    89999988765443

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.72  E-value=8.7e-17  Score=122.09  Aligned_cols=160  Identities=18%  Similarity=0.135  Sum_probs=92.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      +-.+|+|+|.+|||||||+|++++.... ....   .|....+......++  ..+.+|||||.....        .+  
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~-~~~~---~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~--------~~--   68 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFV-EDYE---PTKADSYRKKVVLDGEEVQIDILDTAGQEDYA--------AI--   68 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCC---TTCCEEEEEEEEETTEEEEEEEEECCC---CH--------HH--
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCC-cccC---Cccccccccccccccccccccccccccccchh--------hh--
Confidence            4579999999999999999999866532 2211   122222111111344  378899999965421        11  


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                       .......+|++++|+|.++..+... ..+++.+.+..+ ....|+++|+||+|+....  .+       .....+.+.+
T Consensus        69 -~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiivgnK~Dl~~~~--~v-------~~~~~~~~~~  137 (168)
T d1u8za_          69 -RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKR--QV-------SVEEAKNRAD  137 (168)
T ss_dssp             -HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGGC--CS-------CHHHHHHHHH
T ss_pred             -hhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhC-CCCCcEEEEeccccccccc--cc-------cHHHHHHHHH
Confidence             1112334599999999985444333 344455544322 2335999999999975331  10       1123445555


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ..+..  +|..++.++    .|+.+++..+.+-+
T Consensus       138 ~~~~~--~~e~Sak~g----~gv~e~f~~l~~~i  165 (168)
T d1u8za_         138 QWNVN--YVETSAKTR----ANVDKVFFDLMREI  165 (168)
T ss_dssp             HHTCE--EEECCTTTC----TTHHHHHHHHHHHH
T ss_pred             HcCCe--EEEEcCCCC----cCHHHHHHHHHHHH
Confidence            55544  455555544    78999988765544

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.1e-16  Score=123.51  Aligned_cols=161  Identities=12%  Similarity=0.071  Sum_probs=95.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-----------eCCcEEEEEeCCCCCCCCCChH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-----------KDGQVVNVIDTPGLFDSSADSE   87 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-----------~~~~~~~liDTPG~~~~~~~~~   87 (259)
                      ..+|+++|.+|||||||++++++........  +..+.......+..           .....+.+|||||.        
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~--------   74 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFI--TTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ--------   74 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEE--EEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH--------
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccC--CcccceeeEEEEEEecccccccccccceEEeccccCCcc--------
Confidence            3789999999999999999999776422111  11111111111111           01236899999992        


Q ss_pred             HHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCCcccHHhhhCCCC
Q 024985           88 FVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDNDETLEDYLGPEC  165 (259)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~  165 (259)
                         +.+.........++|++|+|+|+++..+...  +..++......  ....|+++|.||+|+....  .+       .
T Consensus        75 ---e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~--~v-------~  140 (186)
T d2f7sa1          75 ---ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQR--EV-------N  140 (186)
T ss_dssp             ---HHHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGGC--CS-------C
T ss_pred             ---hhhHHHHHHHHhcCCEEEEEEecccccccee--eeeccchhhhhccCCCceEEEEeeeccchhhh--cc-------h
Confidence               2344444445678899999999984332222  22333332211  1234889999999986431  11       1


Q ss_pred             CchHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          166 PKPLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ....+++.+.++.+++..++.  .+    .++.++++.+.+.+.
T Consensus       141 ~~e~~~~~~~~~~~~~e~Sak--~~----~~i~e~f~~l~~~i~  178 (186)
T d2f7sa1         141 ERQARELADKYGIPYFETSAA--TG----QNVEKAVETLLDLIM  178 (186)
T ss_dssp             HHHHHHHHHHTTCCEEEEBTT--TT----BTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCEEEEEeCC--CC----CCHHHHHHHHHHHHH
Confidence            224556677776655444443  33    789999998877654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7.6e-17  Score=124.35  Aligned_cols=166  Identities=13%  Similarity=0.055  Sum_probs=97.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~   94 (259)
                      ...++|+|+|.+|||||||++++++... ....  .++........+. ..+  ..+.+|||||.....           
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f-~~~~--~~Ti~~~~~~~~~-~~~~~~~l~i~D~~g~e~~~-----------   71 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAF-PEEY--VPTVFDHYAVSVT-VGGKQYLLGLYDTAGQEDYD-----------   71 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSC-CCSC--CCSSCCCEEEEEE-SSSCEEEEEEECCCCSSSST-----------
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCC-CCcC--CCceeeeeeEEEe-eCCceEEeecccccccchhh-----------
Confidence            4458999999999999999999987653 2221  1111111111122 233  368899999965322           


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC-----CCCc
Q 024985           95 KCIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP-----ECPK  167 (259)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~-----~~~~  167 (259)
                      ......+.++|++++|+|++++-+...  ..+...+.. ...  ..|+++|.||+|+..+  .........     -...
T Consensus        72 ~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~-~~~--~~~~ilvgnK~Dl~~~--~~~~~~~~~~~~r~v~~~  146 (185)
T d2atxa1          72 RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE-YAP--NVPFLLIGTQIDLRDD--PKTLARLNDMKEKPICVE  146 (185)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HST--TCCEEEEEECTTSTTC--HHHHHHHTTTTCCCCCHH
T ss_pred             hhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHh-cCC--CCCeeEeeeccccccc--hhhhhhhhhcccccccHH
Confidence            122345778899999999985444332  233444443 333  3499999999998764  222211110     0111


Q ss_pred             hHHHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          168 PLKEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      ...++.+..+. ..++..++..+    .|+.++++.+...
T Consensus       147 ~~~~~a~~~~~-~~~~E~SAk~~----~gv~e~F~~li~~  181 (185)
T d2atxa1         147 QGQKLAKEIGA-CCYVECSALTQ----KGLKTVFDEAIIA  181 (185)
T ss_dssp             HHHHHHHHHTC-SCEEECCTTTC----TTHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC-CEEEEecCCCC----cCHHHHHHHHHHH
Confidence            23444555543 23455555544    7899998876543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=7e-17  Score=122.73  Aligned_cols=162  Identities=20%  Similarity=0.113  Sum_probs=97.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      +..+|+++|.+|||||||++++++..... ...+   |....+......++  ..+.+|||+|........         
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~-~~~~---t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~---------   69 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVP-DYDP---TIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMR---------   69 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCT-TCCT---TCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSH---------
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCc-ccCc---ceeeccccccccccccccccccccccccccccch---------
Confidence            45899999999999999999998766422 2111   11111111111233  478899999976443221         


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                        ...+.++|++++|+|++++-+... ..++..+.+..+ ....|+++|.||+|+....  .+       ......++.+
T Consensus        70 --~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~-~~~~p~ilvgnK~Dl~~~~--~v-------~~e~~~~~~~  137 (169)
T d1x1ra1          70 --EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLR--KV-------TRDQGKEMAT  137 (169)
T ss_dssp             --HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTC--CS-------CHHHHHHHHH
T ss_pred             --hhhhhhccEEEEecccccchhhhccchhhHHHHhhcc-ccCccEEEEecccchhhhc--ee-------ehhhHHHHHH
Confidence              112235599999999985544332 345555554332 2235899999999987541  11       1124456666


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ..+..++..++....     .||.+++..+.+.+.
T Consensus       138 ~~~~~~~e~Sak~~~-----~nV~~~F~~l~~~i~  167 (169)
T d1x1ra1         138 KYNIPYIETSAKDPP-----LNVDKTFHDLVRVIR  167 (169)
T ss_dssp             HHTCCEEEEBCSSSC-----BSHHHHHHHHHHHHH
T ss_pred             HcCCEEEEEcCCCCC-----cCHHHHHHHHHHHHH
Confidence            666665555443211     379999888776654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.71  E-value=1e-16  Score=125.70  Aligned_cols=168  Identities=15%  Similarity=0.162  Sum_probs=99.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCC-CCC-----cceeeEEEEE----------------------EeeCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAG-SSG-----VTKTCEMQRT----------------------MLKDG   68 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~-~~~-----~T~~~~~~~~----------------------~~~~~   68 (259)
                      .+..+|+++|..++|||||+|+|++......... ...     ..........                      .....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            4558999999999999999999997432111000 000     0000000000                      00112


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF-SEEGGAAIHSLESLFGKKVFDYMIVVFTGG  147 (259)
Q Consensus        69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~  147 (259)
                      +.+.++||||.           ..+...+..+...+|++|+|+|+..++ ..+.++.+..+.. +|.   +|++|++||+
T Consensus        86 r~~~iiD~PGH-----------~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~-~~i---~~iIV~vNK~  150 (205)
T d2qn6a3          86 RRISFIDAPGH-----------EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IGV---KNLIIVQNKV  150 (205)
T ss_dssp             EEEEEEECSCH-----------HHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECG
T ss_pred             EEEEEeccchH-----------HHHHhhhhcceeccccccccccccccccchhHHHHHHHHHH-cCC---ceeeeccccC
Confidence            36899999993           245555555667889999999999776 5566667766655 443   3889999999


Q ss_pred             CCCCCCcccHHhhhCCCCCchHHHHHHHcCC-cEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          148 NELEDNDETLEDYLGPECPKPLKEILQLCEN-RRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      |+...  ........     .+...+..... .+.++..++..+    .++.+|++.|..+++.
T Consensus       151 Dl~~~--~~~~~~~~-----~~~~~l~~~~~~~~p~ipiSA~~g----~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         151 DVVSK--EEALSQYR-----QIKQFTKGTWAENVPIIPVSALHK----INIDSLIEGIEEYIKT  203 (205)
T ss_dssp             GGSCH--HHHHHHHH-----HHHHHHTTSTTTTCCEEECBTTTT----BSHHHHHHHHHHHSCC
T ss_pred             CCccc--hHHHHHHH-----HHHHHhccccCCCCeEEEEeCCCC----CChHHHHHHHHhhCCC
Confidence            99865  22222111     22333332221 222333343333    7899999999887763

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.8e-16  Score=117.18  Aligned_cols=162  Identities=17%  Similarity=0.107  Sum_probs=93.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccc-cCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKS-KAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~-~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      -.+|+++|.+|||||||+|++++...... ...+.+.......  +. .++  ..+.+||+||...    .    .++  
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~--~~-~~~~~~~~~~~d~~~~~g----~----e~~--   69 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERT--LM-VDGESATIILLDMWENKG----E----NEW--   69 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEE--EE-ETTEEEEEEEECCTTTTH----H----HHH--
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceee--ec-cCCceeeeeeeccccccc----c----ccc--
Confidence            37899999999999999999987653211 1111111111111  11 233  3678999987421    1    122  


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ  174 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (259)
                      ....++..+|++|+|+|+++.-+... ..+...+....+ ....|+++|+||+|+.....-.         ....+++..
T Consensus        70 ~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~v~---------~~~~~~~a~  139 (172)
T d2g3ya1          70 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVS---------VSEGRACAV  139 (172)
T ss_dssp             HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSC---------HHHHHHHHH
T ss_pred             cccccccccceeeeeecccccchhhhhhhhhhhhhhccc-cCCceEEEEecccccccccccc---------HHHHHHHHH
Confidence            22346789999999999985433332 223333333222 2235999999999976431111         123344555


Q ss_pred             HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          175 LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      ..+..  ++..++..+    .++.++++.+.+.+.
T Consensus       140 ~~~~~--~~e~Sak~g----~~i~~~f~~l~~~i~  168 (172)
T d2g3ya1         140 VFDCK--FIETSAAVQ----HNVKELFEGIVRQVR  168 (172)
T ss_dssp             HHTCE--EEECBTTTT----BSHHHHHHHHHHHHH
T ss_pred             HcCCe--EEEEeCCCC----cCHHHHHHHHHHHHH
Confidence            55544  444444443    789999988776554

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.69  E-value=3.3e-16  Score=119.40  Aligned_cols=160  Identities=10%  Similarity=0.009  Sum_probs=93.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      +...+|+|+|.+|||||||+|+|.+.......  +...+....   .. ..+..+.++|++|.......           
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~--~~~~~~~~~---~~-~~~~~~~~~d~~~~~~~~~~-----------   75 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS--PTIGSNVEE---IV-INNTRFLMWDIGGQESLRSS-----------   75 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE--CCSCSSCEE---EE-ETTEEEEEEECCC----CGG-----------
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccc--cccceeEEE---Ee-ecceEEEEeccccccccccc-----------
Confidence            45689999999999999999999998763322  111111111   12 45678999999996543221           


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHH--
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQ--  174 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~--  174 (259)
                      .......++++++|+|.++..+....................|+++|+||+|+...  ...++..         ....  
T Consensus        76 ~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~i~---------~~~~~~  144 (177)
T d1zj6a1          76 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEIS---------QFLKLT  144 (177)
T ss_dssp             GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHH---------HHHTGG
T ss_pred             hhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEccccccc--CcHHHHH---------HHHHHH
Confidence            11123456999999999855444332211111111222234599999999998654  2222111         1111  


Q ss_pred             H-cCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          175 L-CENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       175 ~-~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      . ......++..++.++    +|+.+++++|.+.+
T Consensus       145 ~~~~~~~~~~~~Sa~tg----~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         145 SIKDHQWHIQACCALTG----EGLCQGLEWMMSRL  175 (177)
T ss_dssp             GCCSSCEEEEECBTTTT----BTHHHHHHHHHHHH
T ss_pred             hhHhcCCEEEEEeCCCC----CCHHHHHHHHHHHh
Confidence            1 122344566665554    89999999988765

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=2.2e-17  Score=125.63  Aligned_cols=160  Identities=17%  Similarity=0.113  Sum_probs=94.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+|+++|.+|||||||++++++.........+.+  .......+. ..+  ..+.+|||||.....           ..
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~--~~~~~~~i~-~~~~~~~l~i~d~~g~~~~~-----------~~   68 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG--AAFLTQRVT-INEHTVKFEIWDTAGQERFA-----------SL   68 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS--EEEEEEEEE-ETTEEEEEEEEEECCSGGGG-----------GG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc--ceeeccccc-cccccccccccccCCchhHH-----------HH
Confidence            36899999999999999999987774322211111  111222222 233  479999999964321           11


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                      ....+..+|++++|+|.+++.+... ..++..+.....  ...|+++|.||+|+....  ....    -.....+++.+.
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~v~nk~d~~~~~--~~~~----v~~~~~~~~~~~  140 (170)
T d1ek0a_          69 APMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDMLQEG--GERK----VAREEGEKLAEE  140 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGSS--CCCC----SCHHHHHHHHHH
T ss_pred             HHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccc--cccceeeeeccccccccc--chhh----hhHHHHHHHHHH
Confidence            1224557799999999985544433 222333333222  235999999999986441  1110    011234556666


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      .+.+  +|..++.++    .|+.+++..|.+
T Consensus       141 ~~~~--~~e~Sak~g----~gV~e~F~~i~~  165 (170)
T d1ek0a_         141 KGLL--FFETSAKTG----ENVNDVFLGIGE  165 (170)
T ss_dssp             HTCE--EEECCTTTC----TTHHHHHHHHHT
T ss_pred             cCCE--EEEecCCCC----cCHHHHHHHHHH
Confidence            6654  445555444    789999987654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.3e-16  Score=118.80  Aligned_cols=160  Identities=18%  Similarity=0.085  Sum_probs=94.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      -++|+|+|.+|||||||+|++++.........+.+.+  ....... ..+  ..+.+|||||...           ....
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~~~~i~d~~g~~~-----------~~~~   71 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE--FLNKDLE-VDGHFVTMQIWDTAGQER-----------FRSL   71 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEE--EEEEEEE-ETTEEEEEEEEECCCCGG-----------GHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeee--eeeeeee-ecCceeeEeeecccCcce-----------ehhh
Confidence            3689999999999999999998765422111111111  1111112 333  3678999999542           2223


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKK--VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                      .......+|++++|+|.+++.+... ..+++.+.+.....  ...|+++|.||+|+.+..          -.....+.+.
T Consensus        72 ~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~----------v~~~~~~~~~  141 (174)
T d1wmsa_          72 RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ----------VSTEEAQAWC  141 (174)
T ss_dssp             HGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS----------SCHHHHHHHH
T ss_pred             hhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhcc----------CcHHHHHHHH
Confidence            3455678899999999984433322 34455555433221  224899999999975421          1122344555


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      ...+.. .+|..++..+    .|+.++++.+.+.
T Consensus       142 ~~~~~~-~~~e~Sak~~----~gI~e~f~~l~~~  170 (174)
T d1wmsa_         142 RDNGDY-PYFETSAKDA----TNVAAAFEEAVRR  170 (174)
T ss_dssp             HHTTCC-CEEECCTTTC----TTHHHHHHHHHHH
T ss_pred             HHcCCC-eEEEEcCCCC----cCHHHHHHHHHHH
Confidence            554432 2455555444    7899998876543

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.9e-16  Score=116.36  Aligned_cols=158  Identities=17%  Similarity=0.148  Sum_probs=92.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+|+++|.+|||||||++++++.... ...   ..|....+......++  ..+.+|||||.....        .... 
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~-~~~---~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~--------~~~~-   68 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFI-WEY---DPTLESTYRHQATIDDEVVSMEILDTAGQEDTI--------QREG-   68 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCC-SCC---CTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH--------HHHH-
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCC-Ccc---CCceeccccccccccccceEEEEeecccccccc--------cchh-
Confidence            478999999999999999999976632 221   1232222222222344  378999999965421        1111 


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHHH-HHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGGA-AIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                         ...++|++++|+|++++.+..... +...+.. .......|+++|.||+|+....  .+       .....+.+.+.
T Consensus        69 ---~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~-~~~~~~~piilvgnK~Dl~~~r--~V-------~~~e~~~~a~~  135 (168)
T d2atva1          69 ---HMRWGEGFVLVYDITDRGSFEEVLPLKNILDE-IKKPKNVTLILVGNKADLDHSR--QV-------STEEGEKLATE  135 (168)
T ss_dssp             ---HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH-HHTTSCCCEEEEEECGGGGGGC--CS-------CHHHHHHHHHH
T ss_pred             ---hhcccccceeecccCCccchhhhhhhcccccc-cccccCcceeeeccchhhhhhc--cC-------cHHHHHHHHHH
Confidence               123459999999998554443322 2222322 2222345999999999975431  11       11234555666


Q ss_pred             cCCcEEEEeCCCcccccchh-HHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTE-QVGKLISLVNSVI  208 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~-~i~eLl~~i~~~~  208 (259)
                      .+..  +|..++..+    . ++.+++..+.+.+
T Consensus       136 ~~~~--~~e~Saktg----~gnV~e~F~~l~~~i  163 (168)
T d2atva1         136 LACA--FYECSACTG----EGNITEIFYELCREV  163 (168)
T ss_dssp             HTSE--EEECCTTTC----TTCHHHHHHHHHHHH
T ss_pred             hCCe--EEEEccccC----CcCHHHHHHHHHHHH
Confidence            6554  455555433    4 4888888766544

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=3e-16  Score=118.54  Aligned_cols=162  Identities=14%  Similarity=0.074  Sum_probs=94.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      .++|+++|.+|||||||++++++...........+.+......... .....+.++|++|...          .......
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~   70 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDID-GERIKIQLWDTAGQER----------FRKSMVQ   70 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEET-TEEEEEEEEECCCSHH----------HHTTTHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeee-ccceEEEEEeccCchh----------hccccce
Confidence            3689999999999999999998766433222222222222222111 2334789999999431          1111112


Q ss_pred             hcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      ..+.++|++|+|+|++++-+... ..++..+.+.... ...|++||+||+|+....  .+       .....+.+.+..+
T Consensus        71 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pi~lvgnK~Dl~~~~--~v-------~~~~~~~~~~~~~  140 (165)
T d1z06a1          71 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSAI--QV-------PTDLAQKFADTHS  140 (165)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGGC--CS-------CHHHHHHHHHHTT
T ss_pred             eeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccC-CCCeEEEEeccccchhcc--ch-------hHHHHHHHHHHCC
Confidence            34567899999999985544333 2344444443321 234999999999976441  11       1223455666666


Q ss_pred             CcEEEEeCCCcccccchhHHHHHHHHH
Q 024985          178 NRRVLFDNKTKDAATRTEQVGKLISLV  204 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~i~eLl~~i  204 (259)
                      ..+  |..+++++ ....++.+++..|
T Consensus       141 ~~~--~e~SAkt~-~~~~~V~e~F~~l  164 (165)
T d1z06a1         141 MPL--FETSAKNP-NDNDHVEAIFMTL  164 (165)
T ss_dssp             CCE--EECCSSSG-GGGSCHHHHHHHH
T ss_pred             CEE--EEEecccC-CcCcCHHHHHHHh
Confidence            554  44444332 2236888988765

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.7e-16  Score=120.21  Aligned_cols=160  Identities=15%  Similarity=0.097  Sum_probs=94.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEE-EEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQ-RTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~-~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+|+++|.+|||||||++++++...... ..   .|...... .+.. .....+.+||++|.......    .      
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~-~~---~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~----~------   68 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEK-YD---PTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAM----R------   68 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCS-CC---CCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTH----H------
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCc-cC---CccccccceeEEeeeeEEEeccccccCccccccc----c------
Confidence            47899999999999999999987764221 11   12111111 1111 22247999999997654321    1      


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQL  175 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (259)
                       ......+|++|+|+|++++.+... ..++..+.+..+ ....|+++|.||+|+.......         ......+.+.
T Consensus        69 -~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~~~p~ilvgnK~Dl~~~~~~~---------~~~~~~~~~~  137 (167)
T d1c1ya_          69 -DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVG---------KEQGQNLARQ  137 (167)
T ss_dssp             -HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGCCSC---------HHHHHHHHHH
T ss_pred             -cccccccceeEEeeeccchhhhHhHHHHHHHHHHhcC-CCCCeEEEEEEecCcccccccc---------hhHHHHHHHH
Confidence             112335599999999985544333 344444444332 1234999999999986441111         1123344444


Q ss_pred             cCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          176 CENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ..+ ..+|..++..+    .|+.++++.+.+.+
T Consensus       138 ~~~-~~~~e~Sak~g----~gv~e~F~~l~~~i  165 (167)
T d1c1ya_         138 WCN-CAFLESSAKSK----INVNEIFYDLVRQI  165 (167)
T ss_dssp             TTS-CEEEECBTTTT----BSHHHHHHHHHHHH
T ss_pred             hCC-CEEEEEcCCCC----cCHHHHHHHHHHHh
Confidence            333 34556665554    78999998876644

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.67  E-value=4.2e-16  Score=116.56  Aligned_cols=155  Identities=8%  Similarity=0.017  Sum_probs=90.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      .+|+++|++|||||||+|+|++........  .   ......... .....+.++|+||....           ......
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~--~---~~~~~~~~~-~~~~~~~~~d~~g~~~~-----------~~~~~~   63 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIP--T---IGFNVETVE-YKNISFTVWDVGGQDKI-----------RPLWRH   63 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCC--C---SSCCEEEEE-CSSCEEEEEECCCCGGG-----------HHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcccc--c---eeeEEEEEe-eeeEEEEEecCCCcccc-----------hhhhhh
Confidence            479999999999999999998776522211  1   111111112 45678999999996531           112223


Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHh--cccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcC
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLF--GKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCE  177 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~--~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (259)
                      ....++++++++|..++.+...  ...++.+..  ......|+++|.||.|....  ....+....       .....+.
T Consensus        64 ~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~--~~~~~i~~~-------~~~~~~~  132 (160)
T d1r8sa_          64 YFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDK-------LGLHSLR  132 (160)
T ss_dssp             HTTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-------TTGGGCS
T ss_pred             hhccceeEEEEEEecChHHHHH--HHHHHHHHHHhhcccCceEEEEeeccccccc--ccHHHHHHH-------HHHHHHh
Confidence            4567799999999985443332  122222221  11123589999999998754  222221110       0011111


Q ss_pred             -CcEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          178 -NRRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       178 -~~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                       ..+.++..++.++    .|+.++++.|.+
T Consensus       133 ~~~~~~~~~SAktg----~gi~e~~~~l~~  158 (160)
T d1r8sa_         133 HRNWYIQATCATSG----DGLYEGLDWLSN  158 (160)
T ss_dssp             SCCEEEEECBTTTT----BTHHHHHHHHHH
T ss_pred             hCCCEEEEeECCCC----CCHHHHHHHHHh
Confidence             2345666666655    899999998765

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.7e-16  Score=120.91  Aligned_cols=167  Identities=15%  Similarity=0.042  Sum_probs=97.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      ...+|+|+|.+|||||||+|++++........   ++........+. .++  ..+.+||++|...           +..
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~---~ti~~~~~~~~~-~~~~~~~~~~~d~~g~~~-----------~~~   68 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI---PTVFDNYSANVM-VDGKPVNLGLWDTAGQED-----------YDR   68 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCC---CCSCCEEEEEEE-ETTEEEEEEEECCCCSGG-----------GTT
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCcccc---cceeeceeeeee-ccCcceEEEeeccccccc-----------chh
Confidence            45799999999999999999999776422211   111111111121 233  3678999999542           222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH--HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh----CCCCCchH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG--GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL----GPECPKPL  169 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~----~~~~~~~l  169 (259)
                      .....+..+|++++|+|++++-+...  ..++..+.. ...  ..|+++|.||+|+..+. ....+..    ........
T Consensus        69 ~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~-~~~--~~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~  144 (183)
T d1mh1a_          69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-HCP--NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQG  144 (183)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HST--TSCEEEEEECHHHHTCH-HHHHHHHHTTCCCCCHHHH
T ss_pred             hhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHH-hCC--CCcEEEEeecccchhhh-hhhhhhhhccccchhhHHH
Confidence            33446778899999999985444332  223444443 222  34999999999976541 1111111    10011122


Q ss_pred             HHHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          170 KEILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      ..+.+..+. ..+|..++.++    .++.+++..+.+.+
T Consensus       145 ~~~a~~~~~-~~~~E~SAk~~----~~V~e~F~~l~~~i  178 (183)
T d1mh1a_         145 LAMAKEIGA-VKYLECSALTQ----RGLKTVFDEAIRAV  178 (183)
T ss_dssp             HHHHHHTTC-SEEEECCTTTC----TTHHHHHHHHHHHH
T ss_pred             HHHHHHcCC-ceEEEcCCCCC----cCHHHHHHHHHHHH
Confidence            333444433 44566666555    79999988776544

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=4.3e-16  Score=126.45  Aligned_cols=137  Identities=16%  Similarity=0.223  Sum_probs=95.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccc----------------cCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKS----------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~----------------~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~   81 (259)
                      ..++|+++|..|+|||||+.+|+-......                .....+.|.......+. +++..++|+||||+.+
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~-~~~~~~n~iDtPG~~d   83 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF-WKDHRINIIDAPGHVD   83 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEE-ETTEEEEEECCCSSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeec-cCCeEEEEecCCchhh
Confidence            456899999999999999999862111000                00112344444445555 5788999999999998


Q ss_pred             CCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhh
Q 024985           82 SSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYL  161 (259)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~  161 (259)
                      ...       +....+..+    |+.|+|+|+..+...+...+++...+ .+.    |.++++||+|....         
T Consensus        84 F~~-------e~~~~l~~~----D~avlVvda~~Gv~~~T~~~w~~a~~-~~l----P~i~fINKmDr~~a---------  138 (276)
T d2bv3a2          84 FTI-------EVERSMRVL----DGAIVVFDSSQGVEPQSETVWRQAEK-YKV----PRIAFANKMDKTGA---------  138 (276)
T ss_dssp             CST-------THHHHHHHC----CEEEEEEETTTSSCHHHHHHHHHHHT-TTC----CEEEEEECTTSTTC---------
T ss_pred             hHH-------HHHHHHHhh----hheEEeccccCCcchhHHHHHHHHHH-cCC----CEEEEEeccccccc---------
Confidence            754       344444434    99999999999999999999998876 343    99999999998765         


Q ss_pred             CCCCCchHHHHHHHcCCcEEE
Q 024985          162 GPECPKPLKEILQLCENRRVL  182 (259)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~~  182 (259)
                        .....+.++.+.++.++..
T Consensus       139 --d~~~~l~ei~~~l~~~~vp  157 (276)
T d2bv3a2         139 --DLWLVIRTMQERLGARPVV  157 (276)
T ss_dssp             --CHHHHHHHHHHTTCCCEEE
T ss_pred             --ccchhHHHHHHHhCCCeEE
Confidence              2233455666666655444

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.5e-16  Score=121.95  Aligned_cols=167  Identities=16%  Similarity=0.077  Sum_probs=97.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~   96 (259)
                      ..+|+|+|.+|||||||++++++..... ..  .+ |............+  ..+.+|||||...           +...
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~-~~--~~-t~~~~~~~~~~~~~~~~~l~i~D~~g~~~-----------~~~~   67 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPS-EY--VP-TVFDNYAVTVMIGGEPYTLGLFDTAGQED-----------YDRL   67 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCS-SC--CC-CSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GTTT
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCC-Cc--CC-ceeeecceeEeeCCceeeeeccccccchh-----------hhhh
Confidence            4799999999999999999998766422 21  12 22222221222333  3789999999543           2223


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHhHH--HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCC----CCCchHH
Q 024985           97 IGMAKDGIHAVLLVFSVRNRFSEEGG--AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGP----ECPKPLK  170 (259)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~----~~~~~l~  170 (259)
                      ....+..+|++++|+|++++-+....  .++..+.. ...  ..|+++|.||+|+.... ...+.....    -.....+
T Consensus        68 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~--~~~i~lvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~  143 (191)
T d2ngra_          68 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCP--KTPFLLVGTQIDLRDDP-STIEKLAKNKQKPITPETAE  143 (191)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCT--TCCEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHHH
T ss_pred             hhhcccccceeecccccchHHHHHHHHHHHHHHHhh-cCC--CCceEEEeccccccccc-hhhhhhhhcccccccHHHHH
Confidence            34567789999999999855443332  23333333 232  34999999999987542 111111110    0112233


Q ss_pred             HHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHH
Q 024985          171 EILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVIL  209 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~  209 (259)
                      .+....+.. .+|..++..+    .++.++++.+...+.
T Consensus       144 ~~~~~~~~~-~~~e~SAk~~----~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         144 KLARDLKAV-KYVECSALTQ----KGLKNVFDEAILAAL  177 (191)
T ss_dssp             HHHHHTTCS-CEEECCTTTC----TTHHHHHHHHHHHHT
T ss_pred             HHHHHcCCC-eEEEEeCCCC----cCHHHHHHHHHHHHh
Confidence            445454432 2455555444    789999887765543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=3.4e-16  Score=122.57  Aligned_cols=118  Identities=10%  Similarity=0.116  Sum_probs=73.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      .++|+|+|++|||||||+|+|++....      +++|+......+. .++..+.++||||.....   .    .+.....
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~------~~tt~~~~~~~~~-~~~~~~~l~D~~g~~~~~---~----~~~~~~~   68 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVR------PTVVSQEPLSAAD-YDGSGVTLVDFPGHVKLR---Y----KLSDYLK   68 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCC------CBCCCSSCEEETT-GGGSSCEEEECCCCGGGT---H----HHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC------CeEEecceEEEEE-eCCeEEEEEecccccchh---h----HHHHHHH
Confidence            579999999999999999999987642      2233333333332 566789999999976422   1    2222333


Q ss_pred             hcCCCccEEEEEEeCCCCCC--HhHHHHH----HHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985           99 MAKDGIHAVLLVFSVRNRFS--EEGGAAI----HSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~--~~~~~~l----~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      .....++.+++++|+.....  .....++    ..+.....  ...|+++|+||+|+...
T Consensus        69 ~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          69 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCE--NGIDILIACNKSELFTA  126 (209)
T ss_dssp             HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHST--TCCCEEEEEECTTSTTC
T ss_pred             HHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHh--ccCCeEEEEEeeccccc
Confidence            33445588999999763221  2222222    22222222  23499999999998765

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.3e-15  Score=116.69  Aligned_cols=166  Identities=13%  Similarity=0.035  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+|+++|.+|||||||+++++....... .  .++.......... .++  ..+.+|||+|....           ....
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~-~--~~t~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~-----------~~~~   67 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPEN-Y--VPTVFENYTASFE-IDTQRIELSLWDTSGSPYY-----------DNVR   67 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSS-C--CCCSEEEEEEEEE-CSSCEEEEEEEEECCSGGG-----------TTTG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCc-c--CCceeeccccccc-ccceEEeeccccccccccc-----------cccc
Confidence            6899999999999999999987764221 1  1111111112222 233  37889999995432           1122


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-H-HHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCC----CchHHH
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-G-AAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPEC----PKPLKE  171 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~----~~~l~~  171 (259)
                      ...+.++|++|+|+|++++-+... . .+...+.. ...  ..|+++|.||+|+.... ....+......    ......
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~--~~~iilVgnK~Dl~~~~-~~~~~~~~~~~~~V~~~e~~~  143 (179)
T d1m7ba_          68 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE-FCP--NTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQGAN  143 (179)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCT--TCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHHHH
T ss_pred             cchhhhhhhhheeeecccCCCHHHHHHHHHHHHhc-cCC--cceEEEEEecccccccc-hhhHHHhhhhcCcchHHHHHH
Confidence            345778899999999985543332 1 22333333 333  34999999999976442 11111111101    113344


Q ss_pred             HHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHHH
Q 024985          172 ILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSVI  208 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~  208 (259)
                      +.+..+.. .++..++..+   ..++.++++.+...+
T Consensus       144 ~a~~~~~~-~y~E~SAk~~---~n~i~~~F~~~~~~~  176 (179)
T d1m7ba_         144 MAKQIGAA-TYIECSALQS---ENSVRDIFHVATLAC  176 (179)
T ss_dssp             HHHHHTCS-EEEECBTTTB---HHHHHHHHHHHHHHH
T ss_pred             HHHHhCCC-eEEEEeCCCC---CcCHHHHHHHHHHHH
Confidence            55554442 3455555433   136999998776554

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.63  E-value=1.5e-14  Score=108.70  Aligned_cols=161  Identities=11%  Similarity=0.065  Sum_probs=97.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      ...+|+++|.+|||||||+|++++......     ..|......... .++..+.++|+||....           ....
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~   66 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVT-YKNLKFQVWDLGGLTSI-----------RPYW   66 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEE-ETTEEEEEEEECCCGGG-----------GGGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce-----ecccceeeeeec-cCceEEEEeeccccccc-----------cccc
Confidence            347999999999999999999998775221     123223333222 56789999999996532           1222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH-HH
Q 024985           98 GMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL-QL  175 (259)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~-~~  175 (259)
                      ......++++++++|......... ...+..... .......|+++|+||.|+...  ....+...        .+. ..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~iv~nk~Dl~~~--~~~~~i~~--------~~~~~~  135 (169)
T d1upta_          67 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLE-EEELRKAILVVFANKQDMEQA--MTSSEMAN--------SLGLPA  135 (169)
T ss_dssp             GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHT-CGGGTTCEEEEEEECTTSTTC--CCHHHHHH--------HHTGGG
T ss_pred             hhhhhhhhhhhhhhhhhhcchhhhccchhhhhhh-hhccccceEEEEEeecccccc--ccHHHHHH--------HHHHHH
Confidence            334567799999999874444332 222222221 112233589999999998765  22221111        111 11


Q ss_pred             c-CCcEEEEeCCCcccccchhHHHHHHHHHHHHHHH
Q 024985          176 C-ENRRVLFDNKTKDAATRTEQVGKLISLVNSVILE  210 (259)
Q Consensus       176 ~-~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~  210 (259)
                      + ...+.+|..++..+    .|+.++++.|.+.+++
T Consensus       136 ~~~~~~~~~~~SA~~g----~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         136 LKDRKWQIFKTSATKG----TGLDEAMEWLVETLKS  167 (169)
T ss_dssp             CTTSCEEEEECCTTTC----TTHHHHHHHHHHHHHT
T ss_pred             HhcCCCEEEEEeCCCC----CCHHHHHHHHHHHHHh
Confidence            1 22345666666555    8999999999887754

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.3e-15  Score=112.39  Aligned_cols=157  Identities=19%  Similarity=0.168  Sum_probs=89.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      +..+|+++|.+|||||||++++++.... . ..+...   ..+......++.  .+.+|||||....         .+  
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~-~-~~~t~~---~~~~~~i~v~~~~~~l~i~Dt~g~~~~---------~~--   67 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQ-V-LEKTES---EQYKKEMLVDGQTHLVLIREEAGAPDA---------KF--   67 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCC-C-CCCSSC---EEEEEEEEETTEEEEEEEEECSSCCCH---------HH--
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCC-C-cCCccc---eeEEEEeecCceEEEEEEeeccccccc---------cc--
Confidence            4689999999999999999999987642 1 111111   111111124453  6889999995421         11  


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhccc-ccCeEEEEEeCCCCCCCCcccHHhhhCCCCCchHHHHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKK-VFDYMIVVFTGGNELEDNDETLEDYLGPECPKPLKEIL  173 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ivV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~  173 (259)
                           +..+|++|+|+|++++-+... ..+.+++....... ...|+++|+||.|+.......+       .....+.+.
T Consensus        68 -----~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v-------~~~~~~~~~  135 (175)
T d2bmja1          68 -----SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV-------GDARARALC  135 (175)
T ss_dssp             -----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCS-------CHHHHHHHH
T ss_pred             -----ccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcch-------hHHHHHHHH
Confidence                 224599999999985544333 33445554432221 2248999999998653311100       011233443


Q ss_pred             HHcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          174 QLCENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      .... ...+|..++..+    .++.+++..+...
T Consensus       136 ~~~~-~~~~~e~SAk~~----~~v~~~F~~l~~~  164 (175)
T d2bmja1         136 ADMK-RCSYYETCATYG----LNVDRVFQEVAQK  164 (175)
T ss_dssp             HTST-TEEEEEEBTTTT----BTHHHHHHHHHHH
T ss_pred             HHhC-CCeEEEeCCCCC----cCHHHHHHHHHHH
Confidence            3333 233454444443    6888887765543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.61  E-value=6.2e-15  Score=119.22  Aligned_cols=114  Identities=25%  Similarity=0.266  Sum_probs=83.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccc-------cCC---------CCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKS-------KAG---------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~-------~~~---------~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~   83 (259)
                      ++|+++|..|+|||||+.+|+.......       +..         ..+.|.......+. .++..+++|||||..++ 
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~-~~~~~~n~iDtPGh~dF-   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL-FRGHRVFLLDAPGYGDF-   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE-ETTEEEEEEECCCSGGG-
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeeccccc-ccccceeEEccCchhhh-
Confidence            6899999999999999999852211000       000         12334444445455 57889999999998764 


Q ss_pred             CChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCC
Q 024985           84 ADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNEL  150 (259)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~  150 (259)
                            ..+....+..+    |++|+|+|+..+...+....++.+.+ .+.    |.++++||+|..
T Consensus        81 ------~~e~~~al~~~----D~avlvvda~~Gv~~~t~~~~~~~~~-~~~----p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 ------VGEIRGALEAA----DAALVAVSAEAGVQVGTERAWTVAER-LGL----PRMVVVTKLDKG  132 (267)
T ss_dssp             ------HHHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CEEEEEECGGGC
T ss_pred             ------hhhhhhhhccc----CceEEEeeccCCccchhHHHHHhhhh-ccc----cccccccccccc
Confidence                  33444444444    99999999999999999999998877 343    999999999974

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.60  E-value=6.2e-15  Score=116.42  Aligned_cols=121  Identities=12%  Similarity=0.124  Sum_probs=82.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCcccc-------------------------------cCCCCCcceeeEEEEEEe
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGRRAFKS-------------------------------KAGSSGVTKTCEMQRTML   65 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~~~~~~-------------------------------~~~~~~~T~~~~~~~~~~   65 (259)
                      ++.++|+++|..++|||||+++|+.......                               .....+.|.......+. 
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~-   85 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS-   85 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE-
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe-
Confidence            3558899999999999999999963211000                               00011233333333333 


Q ss_pred             eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEe
Q 024985           66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFT  145 (259)
Q Consensus        66 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~n  145 (259)
                      ..++.+.+|||||..+.       ...+..    ....+|++++|+|+..++..++.+.+..+.. +|.   +.++|++|
T Consensus        86 ~~~~~~~iiD~PGH~df-------v~~~~~----g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~-~gv---~~iiv~vN  150 (222)
T d1zunb3          86 TAKRKFIIADTPGHEQY-------TRNMAT----GASTCDLAIILVDARYGVQTQTRRHSYIASL-LGI---KHIVVAIN  150 (222)
T ss_dssp             CSSEEEEEEECCCSGGG-------HHHHHH----HHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC---CEEEEEEE
T ss_pred             ccceEEEEEeccchhhh-------hhhhcc----ccccCceEEEEeccccCcccchHHHHHHHHH-cCC---CEEEEEEE
Confidence            46789999999997642       223333    3456699999999998999999888887766 553   37899999


Q ss_pred             CCCCCCCC
Q 024985          146 GGNELEDN  153 (259)
Q Consensus       146 k~D~~~~~  153 (259)
                      |+|+.+.+
T Consensus       151 K~D~~~~~  158 (222)
T d1zunb3         151 KMDLNGFD  158 (222)
T ss_dssp             CTTTTTSC
T ss_pred             cccccccc
Confidence            99998654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=4.4e-15  Score=111.09  Aligned_cols=162  Identities=8%  Similarity=0.005  Sum_probs=92.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMA  100 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~  100 (259)
                      +|+++|++|||||||+|+|++.....  .   .+|......... ..+..+.++||+|...           ........
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~--~---~~t~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~   64 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT--L---QPTWHPTSEELA-IGNIKFTTFDLGGHIQ-----------ARRLWKDY   64 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC--C---CCCCSCEEEEEC-CTTCCEEEEECCCSGG-----------GGGGGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe--e---eceeeEeEEEec-cCCeeEEEEeeccchh-----------hhhhHhhh
Confidence            79999999999999999999887522  1   223323333222 4567889999999542           12223445


Q ss_pred             CCCccEEEEEEeCCCCCCHhH-HHHHHHHHHHhcccccCeEEEEEeCCCCCCCC-cccHHhhhCCCCCchHHHHHHHcCC
Q 024985          101 KDGIHAVLLVFSVRNRFSEEG-GAAIHSLESLFGKKVFDYMIVVFTGGNELEDN-DETLEDYLGPECPKPLKEILQLCEN  178 (259)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~  178 (259)
                      ...++++++++|..+...... ..++..... .......|++++.||.|+.... ...+.+.+... .......... ..
T Consensus        65 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~-~~~~~~~~~~-~~  141 (166)
T d2qtvb1          65 FPEVNGIVFLVDAADPERFDEARVELDALFN-IAELKDVPFVILGNKIDAPNAVSEAELRSALGLL-NTTGSQRIEG-QR  141 (166)
T ss_dssp             CTTCSEEEEEEETTCGGGHHHHHHHHHHHHT-CTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCS-SCCC---CCS-SC
T ss_pred             hhheeeeeeeccccchhhhhhhhHHHHhhhh-hhccCCceEEEEeccccccccCCHHHHHHHhhhh-hhhHHHhhcc-cC
Confidence            667899999999985444332 222222222 1223445899999999986541 11222222110 0000111111 11


Q ss_pred             cEEEEeCCCcccccchhHHHHHHHHHHH
Q 024985          179 RRVLFDNKTKDAATRTEQVGKLISLVNS  206 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~i~eLl~~i~~  206 (259)
                      .+.+|..++..+    +|+.|++++|.+
T Consensus       142 ~~~~~~~SA~tg----~Gv~e~~~~l~~  165 (166)
T d2qtvb1         142 PVEVFMCSVVMR----NGYLEAFQWLSQ  165 (166)
T ss_dssp             CEEEEEEBTTTT----BSHHHHHHHHTT
T ss_pred             CCEEEEeeCCCC----CCHHHHHHHHhC
Confidence            234555555544    799999998764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=4.1e-15  Score=116.39  Aligned_cols=120  Identities=16%  Similarity=0.176  Sum_probs=72.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhh
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~   99 (259)
                      ++|+++|++|||||||+|+|++......  . ++.+.......+....+..+.+|||||...       ..   ......
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~--~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~-------~~---~~~~~~   67 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQYRDT--Q-TSITDSSAIYKVNNNRGNSLTLIDLPGHES-------LR---FQLLDR   67 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCCCB--C-CCCSCEEEEEECSSTTCCEEEEEECCCCHH-------HH---HHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcc--c-CCeeEEEEEEEEeeeeeeeeeeeecccccc-------cc---chhhhh
Confidence            4799999999999999999998765222  1 222222222322223456899999999431       11   122233


Q ss_pred             cCCCccEEEEEEeCCCCCCH---hHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          100 AKDGIHAVLLVFSVRNRFSE---EGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~---~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ....++++++|+|+++....   ....+...+..........|++||+||+|+...
T Consensus        68 ~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          68 FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             hhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            34567999999999743221   112222333322222223489999999998754

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=2.9e-13  Score=111.58  Aligned_cols=129  Identities=16%  Similarity=0.189  Sum_probs=76.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCccee---eEEEE--------------------------------
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKT---CEMQR--------------------------------   62 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~---~~~~~--------------------------------   62 (259)
                      ..++|+|+|..++|||||+|+|+|..+++++..+  +|..   ..+..                                
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~--~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI--VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSC--SCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCc--cccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHH
Confidence            4578999999999999999999999976665432  2321   11111                                


Q ss_pred             ----------------EEeeCCcEEEEEeCCCCCCCCCChH--HHHHHHHHHHhhcCC-CccEEEEEEeCCCCCCHhHHH
Q 024985           63 ----------------TMLKDGQVVNVIDTPGLFDSSADSE--FVSKEIVKCIGMAKD-GIHAVLLVFSVRNRFSEEGGA  123 (259)
Q Consensus        63 ----------------~~~~~~~~~~liDTPG~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~il~v~d~~~~~~~~~~~  123 (259)
                                      +....-..+.||||||+........  .....+......+.. ..+++++|.++...++..+  
T Consensus       103 ~~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~--  180 (299)
T d2akab1         103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--  180 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH--
T ss_pred             hhCCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhH--
Confidence                            0001123589999999985432221  111112222221222 2356777888875666554  


Q ss_pred             HHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          124 AIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       124 ~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      .+..++.. . +...++++|+||+|...+
T Consensus       181 ~~~~~~~~-~-~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         181 ALKIAKEV-D-PQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHHHHH-C-TTCSSEEEEEECGGGSCT
T ss_pred             HHHHHHHh-C-cCCCceeeEEeccccccc
Confidence            33333432 1 222489999999999865

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.54  E-value=5.6e-14  Score=107.20  Aligned_cols=170  Identities=12%  Similarity=0.062  Sum_probs=90.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~   95 (259)
                      .+...+|+|+|++|||||||+|+|++.......  +   |.......+. ..+..+.++|++|......           
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~--~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------   72 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV--P---TLHPTSEELT-IAGMTFTTFDLGGHIQARR-----------   72 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC--------C---CCCCSCEEEE-ETTEEEEEEEECC----CC-----------
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCccee--c---ccccceeEEE-ecccccccccccchhhhhh-----------
Confidence            356689999999999999999999988753221  1   1112222222 4567888999999654322           


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHhHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCCCc-ccHHhhhCCCCCc---hHH
Q 024985           96 CIGMAKDGIHAVLLVFSVRNRFSEEGG-AAIHSLESLFGKKVFDYMIVVFTGGNELEDND-ETLEDYLGPECPK---PLK  170 (259)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~~~-~~~~~~~~~~~~~---~l~  170 (259)
                      .........+++++++|..+....... ..+..... .......|++++.||.|+..... ..+.+.+......   ...
T Consensus        73 ~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~  151 (186)
T d1f6ba_          73 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT-DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV  151 (186)
T ss_dssp             GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHT-CGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCC
T ss_pred             HHhhhhcccceeeeeeeccCccchHHHHHHHHHhhc-ccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhh
Confidence            112344566999999998744333321 11111111 11123459999999999865311 1112211100000   000


Q ss_pred             HHHHHcCCcEEEEeCCCcccccchhHHHHHHHHHHHH
Q 024985          171 EILQLCENRRVLFDNKTKDAATRTEQVGKLISLVNSV  207 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~  207 (259)
                      .........+.++..++.++    +|+.|+++++.+.
T Consensus       152 ~~~~~~~~~~~~~~~SA~tg----~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         152 SLKELNARPLEVFMCSVLKR----QGYGEGFRWMAQY  184 (186)
T ss_dssp             CTTTCCSCCEEEEECBTTTT----BSHHHHHHHHHTT
T ss_pred             hHHHhhcCCCEEEEEeCCCC----CCHHHHHHHHHHh
Confidence            00011122345666666555    7999999987653

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=5.5e-14  Score=112.11  Aligned_cols=140  Identities=16%  Similarity=0.240  Sum_probs=90.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh---CCCc------------------cc--------ccCCCCCcceeeEEEEEEeeCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSIL---GRRA------------------FK--------SKAGSSGVTKTCEMQRTMLKDG   68 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~---~~~~------------------~~--------~~~~~~~~T~~~~~~~~~~~~~   68 (259)
                      +..+|+++|..++|||||+.+|+   |.-.                  +.        ......+.|.......+. ..+
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-~~~   83 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPK   83 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE-CSS
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEec-cCC
Confidence            34799999999999999998885   2100                  00        000113566666655555 577


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHhHHHHHHHHHHHhcccccCeEE
Q 024985           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNR-------FSEEGGAAIHSLESLFGKKVFDYMI  141 (259)
Q Consensus        69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i  141 (259)
                      +.++||||||..+           +...+......+|++|+|+|+..+       ...+..+.+..... +|.   ++++
T Consensus        84 ~~i~iiDtPGH~d-----------f~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~-~gv---~~ii  148 (239)
T d1f60a3          84 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGV---RQLI  148 (239)
T ss_dssp             EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTC---CEEE
T ss_pred             EEEEEEECCCcHH-----------HHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH-cCC---CeEE
Confidence            8999999999764           344445567788999999999744       23455555554444 453   3688


Q ss_pred             EEEeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCC
Q 024985          142 VVFTGGNELEDNDETLEDYLGPECPKPLKEILQLCEN  178 (259)
Q Consensus       142 vV~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  178 (259)
                      |++||+|+.+.+...+.+...     .+..++...+.
T Consensus       149 v~iNKmD~~~~d~~~~~~~~~-----el~~~l~~~~~  180 (239)
T d1f60a3         149 VAVNKMDSVKWDESRFQEIVK-----ETSNFIKKVGY  180 (239)
T ss_dssp             EEEECGGGGTTCHHHHHHHHH-----HHHHHHHHHTC
T ss_pred             EEEECCCCCCCCHHHHHHHHH-----HHHHHHHhcCC
Confidence            999999998754333333322     45555655543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.51  E-value=1.6e-13  Score=113.60  Aligned_cols=32  Identities=28%  Similarity=0.431  Sum_probs=26.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKA   49 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~   49 (259)
                      .-++|+|+|..++|||||||+|+|..+.+++.
T Consensus        23 ~lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~   54 (306)
T d1jwyb_          23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGS   54 (306)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHhCCCCCCCCC
Confidence            34689999999999999999999999766553

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=1.7e-13  Score=106.04  Aligned_cols=113  Identities=14%  Similarity=0.085  Sum_probs=71.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ..+|+++|.+|||||||++.+.    +....   .+|.......+. ..+..+.+|||+|..           .......
T Consensus         2 ~iKivllG~~~vGKTsll~r~~----f~~~~---~pTiG~~~~~~~-~~~~~~~~~D~~gq~-----------~~~~~~~   62 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR----IIHGQ---DPTKGIHEYDFE-IKNVPFKMVDVGGQR-----------SERKRWF   62 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH----HHHSC---CCCSSEEEEEEE-ETTEEEEEEEECC------------------CT
T ss_pred             eEEEEEECCCCCCHHHHHHHHh----cCCCC---CCeeeeEEEEEe-eeeeeeeeeccccee-----------eeccccc
Confidence            3689999999999999999993    22211   123334444444 577899999999953           3333445


Q ss_pred             hcCCCccEEEEEEeCCCCCCH--------hHHHHHHHHHHHhccc--ccCeEEEEEeCCCCC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSE--------EGGAAIHSLESLFGKK--VFDYMIVVFTGGNEL  150 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~--------~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~  150 (259)
                      .....++++++|++.++....        .....+..+...+...  ...|+++|+||+|+.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~  124 (200)
T d1zcba2          63 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL  124 (200)
T ss_dssp             TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             ccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhh
Confidence            677888999999998743221        1123333343333221  234999999999976

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=3.5e-13  Score=112.33  Aligned_cols=117  Identities=18%  Similarity=0.262  Sum_probs=79.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccc--------------cCCCCCcceeeEEEEEEe---------------eCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKS--------------KAGSSGVTKTCEMQRTML---------------KDG   68 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~--------------~~~~~~~T~~~~~~~~~~---------------~~~   68 (259)
                      ..++|+++|..++|||||+.+|+.......              .....+.|.........+               .++
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            456899999999999999999962111000              000123333332222211               123


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCC
Q 024985           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGN  148 (259)
Q Consensus        69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D  148 (259)
                      ..++||||||..+...       ++...+..+    |++|+|+|+..++..++...++.... .+.    |+++|+||+|
T Consensus        96 ~~inliDtPGh~dF~~-------ev~~al~~~----D~allVVda~eGv~~qT~~~~~~a~~-~~~----p~i~viNKiD  159 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSS-------EVTAALRVT----DGALVVVDTIEGVCVQTETVLRQALG-ERI----KPVVVINKVD  159 (341)
T ss_dssp             EEEEEECCCCCCSSCH-------HHHHHHHTC----SEEEEEEETTTBSCHHHHHHHHHHHH-TTC----EEEEEEECHH
T ss_pred             eEEEEEcCCCcHHHHH-------HHHHHHhhc----CceEEEEecccCcchhHHHHHHHHHH-cCC----CeEEEEECcc
Confidence            4699999999887532       555555444    99999999999999999999988765 343    9999999999


Q ss_pred             CC
Q 024985          149 EL  150 (259)
Q Consensus       149 ~~  150 (259)
                      ..
T Consensus       160 r~  161 (341)
T d1n0ua2         160 RA  161 (341)
T ss_dssp             HH
T ss_pred             cc
Confidence            75

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=3.9e-13  Score=103.37  Aligned_cols=168  Identities=13%  Similarity=0.088  Sum_probs=95.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ..+|+++|..|||||||++.+.....+         |.......+. .....+.+|||+|..           .+.....
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~---------t~~~~~~~~~-~~~~~~~i~D~~Gq~-----------~~~~~~~   60 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEA---------GTGIVETHFT-FKDLHFKMFDVGGQR-----------SERKKWI   60 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSC---------CCSEEEEEEE-ETTEEEEEEEECCSG-----------GGGGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCC---------CccEEEEEEE-eeeeeeeeecccccc-----------ccccchh
Confidence            468999999999999999998744331         1112222233 567789999999954           3444455


Q ss_pred             hcCCCccEEEEEEeCCCCCCH--------hHHHHHHHHHHHhcc--cccCeEEEEEeCCCCCCCC--cccHHhhh-CCCC
Q 024985           99 MAKDGIHAVLLVFSVRNRFSE--------EGGAAIHSLESLFGK--KVFDYMIVVFTGGNELEDN--DETLEDYL-GPEC  165 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~--------~~~~~l~~l~~~~~~--~~~~~~ivV~nk~D~~~~~--~~~~~~~~-~~~~  165 (259)
                      .++.+++++++|+|.++..+.        ...+.+..+......  ....|+++|+||+|.....  ...+.... ....
T Consensus        61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~  140 (195)
T d1svsa1          61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAG  140 (195)
T ss_dssp             GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCS
T ss_pred             hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcC
Confidence            678899999999998632211        112223333332211  1224999999999864210  01111110 0000


Q ss_pred             Cch-------HHHHHHH----cC-CcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          166 PKP-------LKEILQL----CE-NRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       166 ~~~-------l~~~~~~----~~-~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                      ...       +......    +. ..++.+..++.++    .++++++..+.+++-++
T Consensus       141 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~----~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         141 SNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT----KNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             CSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH----HHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECC----HhHHHHHHHHHHHHHhc
Confidence            000       1111111    11 2445556677665    89999999988876543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.41  E-value=2.7e-13  Score=107.20  Aligned_cols=119  Identities=24%  Similarity=0.298  Sum_probs=73.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcc-----------------------------cccCCCCCcceeeEEEEEEeeCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAF-----------------------------KSKAGSSGVTKTCEMQRTMLKDG   68 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~-----------------------------~~~~~~~~~T~~~~~~~~~~~~~   68 (259)
                      +..+|+++|..++|||||+.+|+.....                             .......+.|.......+. .++
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~-~~~   80 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE-TKK   80 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE-CSS
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEe-cCC
Confidence            4579999999999999999988521100                             0001122344444444444 567


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC-------HhHHHHHHHHHHHhcccccCeEE
Q 024985           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFS-------EEGGAAIHSLESLFGKKVFDYMI  141 (259)
Q Consensus        69 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~i  141 (259)
                      ..+.||||||..+           +...+......+|+.|+|+|+..+..       .+..+.+..... ++.   .+++
T Consensus        81 ~~i~iiDtPGH~d-----------f~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-~~~---~~iI  145 (224)
T d1jnya3          81 YFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQLI  145 (224)
T ss_dssp             CEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTCE
T ss_pred             ceeEEeeCCCcHH-----------HHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-hCC---CceE
Confidence            8999999999764           34444556677899999999986643       233344443333 343   3788


Q ss_pred             EEEeCCCCCCC
Q 024985          142 VVFTGGNELED  152 (259)
Q Consensus       142 vV~nk~D~~~~  152 (259)
                      |++||+|+...
T Consensus       146 v~iNK~D~~~~  156 (224)
T d1jnya3         146 VAVNKMDLTEP  156 (224)
T ss_dssp             EEEECGGGSSS
T ss_pred             EEEEcccCCCc
Confidence            99999998754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=4.3e-13  Score=103.57  Aligned_cols=171  Identities=15%  Similarity=0.112  Sum_probs=99.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ..+|+++|.+|||||||++++.....  ...    +|.......+. .....+.+|||+|...           +.....
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~--~~~----pTiG~~~~~~~-~~~~~~~~~d~~g~~~-----------~~~~~~   63 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG--SGV----PTTGIIEYPFD-LQSVIFRMVDVGGQRS-----------ERRKWI   63 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS--SCC----CCCSCEEEEEE-CSSCEEEEEECCCSTT-----------GGGGGG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC--CCC----ceeeEEEEEEe-ccceeeeecccccccc-----------cccccc
Confidence            47899999999999999999976553  111    23323333333 4567899999999653           223334


Q ss_pred             hcCCCccEEEEEEeCCCCCC--------HhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCCCC--cccHHhhhCCCC-
Q 024985           99 MAKDGIHAVLLVFSVRNRFS--------EEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELEDN--DETLEDYLGPEC-  165 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~--------~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~~~--~~~~~~~~~~~~-  165 (259)
                      ..+.+++++++|+|.++...        ..-.+.++.+...+..+  ...|+++|+||.|+....  ......+..... 
T Consensus        64 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~  143 (200)
T d2bcjq2          64 HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDG  143 (200)
T ss_dssp             GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCS
T ss_pred             ccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccC
Confidence            56778899999999863211        11122333333333222  234999999999975321  012222211000 


Q ss_pred             -Cch---HHH-HH----H---HcCCcEEEEeCCCcccccchhHHHHHHHHHHHHHHHh
Q 024985          166 -PKP---LKE-IL----Q---LCENRRVLFDNKTKDAATRTEQVGKLISLVNSVILEN  211 (259)
Q Consensus       166 -~~~---l~~-~~----~---~~~~~~~~~~~~~~~~~~~~~~i~eLl~~i~~~~~~~  211 (259)
                       ...   ... +.    +   .....++.|..++.++    +++.++++.|.+.+.+.
T Consensus       144 ~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~----~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         144 PQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT----ENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCH----HHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcC----HhHHHHHHHHHHHHHHH
Confidence             000   111 11    1   1123455666777665    89999999998877653

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=2.5e-13  Score=108.75  Aligned_cols=120  Identities=20%  Similarity=0.220  Sum_probs=68.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh---CCCccc--------------------------ccCCCCCcceeeEEEEEEeeC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSIL---GRRAFK--------------------------SKAGSSGVTKTCEMQRTMLKD   67 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~---~~~~~~--------------------------~~~~~~~~T~~~~~~~~~~~~   67 (259)
                      ++..+|+++|..++|||||+.+|+   |.-...                          ......+.|......... ..
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~-~~  100 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE-TE  100 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE-CS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccc-cc
Confidence            345689999999999999999984   211000                          000011233333333333 46


Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-------CHhHHHHHHHHHHHhcccccCeE
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRF-------SEEGGAAIHSLESLFGKKVFDYM  140 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~  140 (259)
                      +..+.++||||..+           +...+......+|++++|+|+..+.       ..+..+.+..+.. ++.   +++
T Consensus       101 ~~~i~~iDtPGH~d-----------f~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~-~~i---~~i  165 (245)
T d1r5ba3         101 HRRFSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI---NHL  165 (245)
T ss_dssp             SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC---SSE
T ss_pred             cceeeeeccccccc-----------chhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH-cCC---CeE
Confidence            67899999999654           3333444566789999999997553       2355666655555 443   368


Q ss_pred             EEEEeCCCCCCC
Q 024985          141 IVVFTGGNELED  152 (259)
Q Consensus       141 ivV~nk~D~~~~  152 (259)
                      ++++||+|+...
T Consensus       166 iv~iNKmD~~~~  177 (245)
T d1r5ba3         166 VVVINKMDEPSV  177 (245)
T ss_dssp             EEEEECTTSTTC
T ss_pred             EEEEEcCCCCcc
Confidence            899999998743

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.28  E-value=1.7e-11  Score=96.43  Aligned_cols=113  Identities=15%  Similarity=0.138  Sum_probs=74.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~   98 (259)
                      ..+|+++|.+|||||||++.+.....    .+    |.......+. .++..+.++|++|.....           ....
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~----~p----TiG~~~~~~~-~~~~~~~~~D~~Gq~~~r-----------~~w~   65 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHV----VL----TSGIFETKFQ-VDKVNFHMFDVGGQRDER-----------RKWI   65 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHC----CC----CCSCEEEEEE-ETTEEEEEEECCCSTTTT-----------TGGG
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCc----CC----CCCeEEEEEE-ECcEEEEEEecCccceec-----------cchh
Confidence            47999999999999999999863322    11    2223333333 567899999999965322           1223


Q ss_pred             hcCCCccEEEEEEeCCCC--------CCHhHHHHHHHHHHHhccc--ccCeEEEEEeCCCCCC
Q 024985           99 MAKDGIHAVLLVFSVRNR--------FSEEGGAAIHSLESLFGKK--VFDYMIVVFTGGNELE  151 (259)
Q Consensus        99 ~~~~~~~~il~v~d~~~~--------~~~~~~~~l~~l~~~~~~~--~~~~~ivV~nk~D~~~  151 (259)
                      .+..+++++++|+|.+..        ....-.+.+..+..++..+  ...|++|++||+|+.+
T Consensus        66 ~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~  128 (221)
T d1azta2          66 QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA  128 (221)
T ss_dssp             GGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred             hhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhh
Confidence            456788999999998621        1112234445555555443  2349999999999874

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.23  E-value=2.6e-12  Score=106.79  Aligned_cols=88  Identities=16%  Similarity=0.057  Sum_probs=44.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEe-----------------------eCCcEEEEEeCC
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTML-----------------------KDGQVVNVIDTP   77 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-----------------------~~~~~~~liDTP   77 (259)
                      +|+|+|.||||||||+|+|+|...  ....++.+|.++.......                       .....+.++|+|
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~~--~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p   79 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVDV--EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             cEeEECCCCCCHHHHHHHHHCCCC--chhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence            699999999999999999999875  2233455555443321100                       011369999999


Q ss_pred             CCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985           78 GLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR  114 (259)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (259)
                      |+............    .+-.....+|++++|+|+.
T Consensus        80 Gli~ga~~g~~~~~----~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          80 GLVPGAHEGRGLGN----KFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             -------------------CCCSSTTCSEEEEEEETT
T ss_pred             CcccchhcccchHH----HHHHhhccceEEEEEeccc
Confidence            99765333222222    2233456789999999985

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.19  E-value=9.4e-12  Score=102.29  Aligned_cols=91  Identities=18%  Similarity=0.139  Sum_probs=66.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeC----------------CcEEEEEeCCCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKD----------------GQVVNVIDTPGLFDS   82 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~----------------~~~~~liDTPG~~~~   82 (259)
                      ..+|++||.||||||||+|+|++...... ..++.+|.++....+...+                ...+.++|.||+...
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~-anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGNP-ANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTST-TCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCCc-CCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            36899999999999999999998765323 3456777666555444222                136899999999876


Q ss_pred             CCChHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 024985           83 SADSEFVSKEIVKCIGMAKDGIHAVLLVFSVR  114 (259)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (259)
                      ......+..++...+.    .+|++++|+|+.
T Consensus        89 A~~g~GLGn~fL~~ir----~~d~lihVV~~f  116 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVR----AVDAIYQVVRAF  116 (296)
T ss_dssp             CCSSSSSCHHHHHHHT----TCSEEEEEEECC
T ss_pred             cccccccHHHHHHHhh----ccceeEEEEecc
Confidence            6555555666766655    449999999875

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.18  E-value=4.5e-12  Score=103.32  Aligned_cols=88  Identities=18%  Similarity=0.135  Sum_probs=60.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCC----------------cEEEEEeCCCCCCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDG----------------QVVNVIDTPGLFDSS   83 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~----------------~~~~liDTPG~~~~~   83 (259)
                      .+|.|||.|+||||||+|+|++...  ....++.+|..+....+...+.                -.+.++|.||+....
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~--~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGI--EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCC--ccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            5899999999999999999998875  2334566666666554432221                247899999998654


Q ss_pred             CChHHHHHHHHHHHhhcCCCccEEEEEEeC
Q 024985           84 ADSEFVSKEIVKCIGMAKDGIHAVLLVFSV  113 (259)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~  113 (259)
                      .....+..++.+.+..+    |++++|+|+
T Consensus        81 ~~g~Glg~~FL~~ir~~----d~LihVVr~  106 (278)
T d1jala1          81 SKGEGLGNKFLANIRET----DAIGHVVRC  106 (278)
T ss_dssp             HHHGGGTCCHHHHHHTC----SEEEEEEEC
T ss_pred             ccCCCccHHHHHHHHhc----cceEEEeec
Confidence            33334555677766655    999999986

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.14  E-value=2.5e-10  Score=90.43  Aligned_cols=77  Identities=13%  Similarity=0.065  Sum_probs=42.7

Q ss_pred             EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCC
Q 024985           70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNE  149 (259)
Q Consensus        70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~  149 (259)
                      .+.++||||..+..    .........+  .....+++++++|+.....+...................|.++|+||+|+
T Consensus        96 ~~~~id~~g~~~~~----~~~~~~~~~~--~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~  169 (244)
T d1yrba1          96 DYVLIDTPGQMETF----LFHEFGVRLM--ENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDL  169 (244)
T ss_dssp             SEEEEECCSSHHHH----HHSHHHHHHH--HTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGG
T ss_pred             ceeeeccccchhHH----HHHHHHHHHH--hhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeecccc
Confidence            48999999964210    0011111111  12345688999998755555543322222221111223489999999999


Q ss_pred             CCC
Q 024985          150 LED  152 (259)
Q Consensus       150 ~~~  152 (259)
                      ...
T Consensus       170 ~~~  172 (244)
T d1yrba1         170 LSE  172 (244)
T ss_dssp             CCH
T ss_pred             ccH
Confidence            865

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=4e-10  Score=93.30  Aligned_cols=24  Identities=25%  Similarity=0.245  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 024985           17 NAERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...++|++.|+||||||||+|+|.
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHH
Confidence            457899999999999999999996

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.12  E-value=5.5e-11  Score=96.46  Aligned_cols=68  Identities=22%  Similarity=0.355  Sum_probs=44.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHH
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEF   88 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~   88 (259)
                      .....+|+++|.||||||||+|+|.+.....++ ..+|+|+.....    ..+..+.++||||+.........
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~-~~pG~Tr~~~~i----~~~~~~~l~DTPGi~~p~~~~~~  176 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWV----KVGKELELLDTPGILWPKFEDEL  176 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCE----EETTTEEEEECCCCCCSCCCCHH
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEEC-CcccccccceEE----ECCCCeEEecCCCccccCCccHH
Confidence            445689999999999999999999999875554 346677665433    23567999999999866554443

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.98  E-value=1.8e-10  Score=89.79  Aligned_cols=60  Identities=25%  Similarity=0.305  Sum_probs=38.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccC-C-----CCCcceeeEEEEEEeeCCcEEEEEeCCCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKA-G-----SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS   82 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~-~-----~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~   82 (259)
                      ..+.+|+|.||||||||+|+|.+.....++. +     ...+|+....+...  .|  -.+|||||+.+.
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~--~g--g~iiDTPG~r~~  160 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFD--FG--GYVVDTPGFANL  160 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECT--TS--CEEESSCSSTTC
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEEC--CC--cEEEeCCccccc
Confidence            4678999999999999999999876543331 1     12245555554322  22  379999998654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.90  E-value=2.5e-09  Score=88.28  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 024985           17 NAERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...++|.+.|+||||||||+++|.
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~   72 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALG   72 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHH
Confidence            456899999999999999999986

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=1.3e-08  Score=78.72  Aligned_cols=96  Identities=17%  Similarity=0.138  Sum_probs=54.1

Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcC----CCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEE
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAK----DGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVV  143 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV  143 (259)
                      +..++||||||...   .+.....++........    ..++-+++|+|++.+  ..+..-.....+.++     +.=+|
T Consensus        93 ~~d~ilIDTaGr~~---~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~-----~~~lI  162 (213)
T d1vmaa2          93 NKDVVIIDTAGRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVN-----VTGII  162 (213)
T ss_dssp             TCSEEEEEECCCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSC-----CCEEE
T ss_pred             CCCEEEEecccccc---chHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhccccC-----CceEE
Confidence            44689999999653   23444445544433221    235778999998632  222112222222233     55689


Q ss_pred             EeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985          144 FTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       144 ~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                      +||.|....             --.+-.+...++-++.++...
T Consensus       163 ~TKlDe~~~-------------~G~~l~~~~~~~~Pi~~i~~G  192 (213)
T d1vmaa2         163 LTKLDGTAK-------------GGITLAIARELGIPIKFIGVG  192 (213)
T ss_dssp             EECGGGCSC-------------TTHHHHHHHHHCCCEEEEECS
T ss_pred             EecccCCCc-------------ccHHHHHHHHHCCCEEEEeCC
Confidence            999997643             123334455667777777665

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.81  E-value=4.6e-10  Score=87.70  Aligned_cols=59  Identities=29%  Similarity=0.431  Sum_probs=34.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccccC-C---CC--CcceeeEEEEEEeeCCcEEEEEeCCCCCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKSKA-G---SS--GVTKTCEMQRTMLKDGQVVNVIDTPGLFDS   82 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~~~-~---~~--~~T~~~~~~~~~~~~~~~~~liDTPG~~~~   82 (259)
                      ..+.+|+|.||||||||+|+|++.....++. +   ..  .+|+....+.   .+| . .+|||||+.+.
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~---~~g-g-~iiDTPG~r~~  161 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIH---TSG-G-LVADTPGFSSL  161 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEE---ETT-E-EEESSCSCSSC
T ss_pred             cceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEe---cCC-C-EEEECCccccc
Confidence            3567899999999999999999876444321 1   11  2444444432   233 2 58999998754

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=3.9e-08  Score=75.71  Aligned_cols=96  Identities=13%  Similarity=0.129  Sum_probs=54.3

Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcC----CCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEE
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAK----DGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVV  143 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV  143 (259)
                      +..++||||||...   .+....+++.+......    ..++-+++|+|++.+  ..+........+..+     +--+|
T Consensus        91 ~~d~ilIDTaGr~~---~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~-----~~~lI  160 (211)
T d2qy9a2          91 NIDVLIADTAGRLQ---NKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----LTGIT  160 (211)
T ss_dssp             TCSEEEECCCCCGG---GHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHHHHSC-----CCEEE
T ss_pred             CCCEEEeccCCCcc---ccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC--cchHHHHhhhhhccC-----CceEE
Confidence            34689999999652   23334445444433221    235788999998733  222222222222233     55689


Q ss_pred             EeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985          144 FTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       144 ~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                      +||.|....             --.+-.+...++-++.++...
T Consensus       161 lTKlDe~~~-------------~G~~l~~~~~~~~Pi~~i~~G  190 (211)
T d2qy9a2         161 LTKLDGTAK-------------GGVIFSVADQFGIPIRYIGVG  190 (211)
T ss_dssp             EECCTTCTT-------------TTHHHHHHHHHCCCEEEEECS
T ss_pred             EeecCCCCC-------------ccHHHHHHHHHCCCEEEEeCC
Confidence            999998644             223444556667777777765

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.79  E-value=3.4e-08  Score=76.19  Aligned_cols=97  Identities=8%  Similarity=0.012  Sum_probs=52.5

Q ss_pred             CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeC
Q 024985           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTG  146 (259)
Q Consensus        67 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk  146 (259)
                      .+..++||||||.... ........++.......  .++-+++|++++.+...  ..........++     .--+|+||
T Consensus        93 ~~~d~IlIDTaGr~~~-~~~~~~~~el~~~~~~~--~~~~~~LVl~a~~~~~~--~~~~~~~~~~~~-----~~~lI~TK  162 (211)
T d1j8yf2          93 EKMEIIIVDTAGRHGY-GEEAALLEEMKNIYEAI--KPDEVTLVIDASIGQKA--YDLASKFNQASK-----IGTIIITK  162 (211)
T ss_dssp             TTCSEEEEECCCSCCT-TCHHHHHHHHHHHHHHH--CCSEEEEEEEGGGGGGH--HHHHHHHHHHCT-----TEEEEEEC
T ss_pred             cCCceEEEecCCcCcc-chhhHHHHHHHHHHhhc--CCceEEEEEecccCcch--HHHHhhhhcccC-----cceEEEec
Confidence            3457999999997432 12222233443333222  34678999998744322  222222222233     44578999


Q ss_pred             CCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985          147 GNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                      .|....-             -.+-.+...++-++.++...
T Consensus       163 lDet~~~-------------G~~l~~~~~~~lPi~~it~G  189 (211)
T d1j8yf2         163 MDGTAKG-------------GGALSAVAATGATIKFIGTG  189 (211)
T ss_dssp             TTSCSCH-------------HHHHHHHHTTTCCEEEEECS
T ss_pred             ccCCCcc-------------cHHHHHHHHHCcCEEEEeCC
Confidence            9977441             12334455556666666664

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.77  E-value=4.6e-08  Score=75.22  Aligned_cols=96  Identities=18%  Similarity=0.153  Sum_probs=53.7

Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHH---Hhhc-CCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEE
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKC---IGMA-KDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVV  143 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV  143 (259)
                      +..++||||||....   ......++...   .... ...++-+++|+|++.+.  .+........+.++     +--+|
T Consensus        88 ~~d~ilIDTaGr~~~---d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~~-----~~~lI  157 (207)
T d1okkd2          88 GYDLLFVDTAGRLHT---KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----LTGVI  157 (207)
T ss_dssp             TCSEEEECCCCCCTT---CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----CSEEE
T ss_pred             CCCEEEcCccccchh---hHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCc--hHHHHHHHhhhccC-----CceEE
Confidence            347899999997643   22223333332   2211 23557789999997443  22222222223244     55689


Q ss_pred             EeCCCCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeCC
Q 024985          144 FTGGNELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDNK  186 (259)
Q Consensus       144 ~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (259)
                      +||.|....             --.+-.+....+-++.++...
T Consensus       158 ~TKlDet~~-------------~G~~l~~~~~~~~Pi~~i~~G  187 (207)
T d1okkd2         158 VTKLDGTAK-------------GGVLIPIVRTLKVPIKFVGVG  187 (207)
T ss_dssp             EECTTSSCC-------------CTTHHHHHHHHCCCEEEEECS
T ss_pred             EeccCCCCC-------------ccHHHHHHHHHCCCEEEEeCC
Confidence            999997644             223444555667777666654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.74  E-value=2.1e-07  Score=71.48  Aligned_cols=93  Identities=15%  Similarity=0.130  Sum_probs=53.6

Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCC
Q 024985           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGG  147 (259)
Q Consensus        68 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~  147 (259)
                      +..++||||||....   +.....++.......  .++-+++|+++..+  ...........+.++     .--+|+||.
T Consensus        92 ~~d~vlIDTaGr~~~---d~~~~~el~~~~~~~--~~~~~llv~~a~~~--~~~~~~~~~f~~~~~-----~~~~I~TKl  159 (207)
T d1ls1a2          92 ARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKVG-----VTGLVLTKL  159 (207)
T ss_dssp             TCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----CCEEEEECG
T ss_pred             cCcceeecccccchh---hhhhHHHHHHHHhhc--CCceEEEEeccccc--hhHHHHHHHHHhhCC-----CCeeEEeec
Confidence            347899999997642   333444555443322  45788999998633  333334444444344     445889999


Q ss_pred             CCCCCCcccHHhhhCCCCCchHHHHHHHcCCcEEEEeC
Q 024985          148 NELEDNDETLEDYLGPECPKPLKEILQLCENRRVLFDN  185 (259)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  185 (259)
                      |....             --.+-.+....+-++.++..
T Consensus       160 De~~~-------------~G~~l~~~~~~~~Pi~~i~~  184 (207)
T d1ls1a2         160 DGDAR-------------GGAALSARHVTGKPIYFAGV  184 (207)
T ss_dssp             GGCSS-------------CHHHHHHHHHHCCCEEEEC-
T ss_pred             Ccccc-------------chHHHHHHHHHCCCEEEEeC
Confidence            97643             22334445555666655543

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=5.6e-07  Score=72.27  Aligned_cols=68  Identities=26%  Similarity=0.301  Sum_probs=48.7

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCC-cccccCCCCCcceeeEEEEEEe--eCCcEEEEEeCCCCCCCC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGRR-AFKSKAGSSGVTKTCEMQRTML--KDGQVVNVIDTPGLFDSS   83 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~~-~~~~~~~~~~~T~~~~~~~~~~--~~~~~~~liDTPG~~~~~   83 (259)
                      ..+...|.++|+.++|||+|+|.|+|.. .+..+....++|...-......  ..+..+.++||.|+.+..
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~   99 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE   99 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccc
Confidence            3455689999999999999999999866 3445555556666654443322  234589999999998643

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.05  E-value=2.5e-05  Score=57.68  Aligned_cols=24  Identities=25%  Similarity=0.508  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      +|+++|++|+|||||++.|++.-.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCC
Confidence            699999999999999999987543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=4.1e-05  Score=59.10  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +.+..++.|.-|||||||+|.++..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4578899999999999999999753

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.73  E-value=1.2e-06  Score=66.93  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999973

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=0.00018  Score=56.88  Aligned_cols=102  Identities=15%  Similarity=0.178  Sum_probs=50.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+.+++|||++|+|||+++..|...-.  .+..+.            ...+..+.-+|+..+........++...+...+
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri~--~~~vp~------------~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~  103 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRIV--QGDVPE------------VMADCTIYSLDIGSLLAGTKYRGDFEKRFKALL  103 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHH--HTCSCG------------GGTTCEEEECCCC---CCCCCSSCHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHHH--hCCccc------------ccccceeEEeeechHhccCccchhHHHHHHHHH
Confidence            346899999999999999998863322  110000            123345556666665543332333343443333


Q ss_pred             hhcCCCccEEEEEEe-CCC-----CCCHhHHHHHHHHHHHhcc
Q 024985           98 GMAKDGIHAVLLVFS-VRN-----RFSEEGGAAIHSLESLFGK  134 (259)
Q Consensus        98 ~~~~~~~~~il~v~d-~~~-----~~~~~~~~~l~~l~~~~~~  134 (259)
                      ...... +-+|+++| +..     .-+.........|+..+..
T Consensus       104 ~~~~~~-~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~r  145 (268)
T d1r6bx2         104 KQLEQD-TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS  145 (268)
T ss_dssp             HHHSSS-SCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS
T ss_pred             HHhhcc-CCceEEecchHHHhcCCCCCCccccHHHHhhHHHhC
Confidence            332222 33455555 331     1122345566666665543

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=1.9e-05  Score=57.67  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      +.|+|+|.+|||||||++.|..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999984

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.55  E-value=4.7e-05  Score=60.67  Aligned_cols=46  Identities=13%  Similarity=0.079  Sum_probs=34.9

Q ss_pred             cCCCccEEEEEEeCCCCCCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          100 AKDGIHAVLLVFSVRNRFSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      ....+|+||+|+|+..+++..+..+.+.++       .+|.++|+||+|+.+.
T Consensus        12 ~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~-------~Kp~IlVlNK~DLv~~   57 (273)
T d1puja_          12 KLKLIDIVYELVDARIPMSSRNPMIEDILK-------NKPRIMLLNKADKADA   57 (273)
T ss_dssp             HGGGCSEEEEEEETTSTTTTSCHHHHHHCS-------SSCEEEEEECGGGSCH
T ss_pred             HHHhCCEEEEEEECCCCCCCCCHHHHHHHc-------CCCeEEEEECccCCch
Confidence            344569999999998788777655544442       2599999999999865

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.51  E-value=2.1e-05  Score=58.16  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ..+|+|+|++|||||||.++|...
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999999743

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.51  E-value=3.6e-05  Score=60.18  Aligned_cols=30  Identities=17%  Similarity=0.184  Sum_probs=25.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKS   47 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~   47 (259)
                      +.-.++++|++|||||||++.|+|-..+..
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~   56 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTA   56 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSCCSB
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCC
Confidence            346899999999999999999998775443

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=2.6e-05  Score=60.95  Aligned_cols=27  Identities=30%  Similarity=0.326  Sum_probs=23.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-.|+++|++|||||||++.|+|...+
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl~~p   55 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRFYIP   55 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            458999999999999999999987653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.44  E-value=4.1e-05  Score=60.24  Aligned_cols=27  Identities=37%  Similarity=0.528  Sum_probs=23.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-.++|+|++|||||||++.|+|-..+
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~gl~~p   67 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITRFYDI   67 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcccCC
Confidence            458999999999999999999987653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=4.5e-05  Score=59.95  Aligned_cols=28  Identities=25%  Similarity=0.286  Sum_probs=24.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFK   46 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~   46 (259)
                      .-.++++|++|||||||++.|+|-..+.
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~gl~~p~   67 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQNLYQPT   67 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcccCCC
Confidence            4589999999999999999999877543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.42  E-value=4.7e-05  Score=58.88  Aligned_cols=27  Identities=26%  Similarity=0.222  Sum_probs=23.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-.++++|++|||||||++.|.|-..+
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~gl~~p   57 (230)
T d1l2ta_          31 GEFVSIMGPSGSGKSTMLNIIGCLDKP   57 (230)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CCEEEEECCCCCCcchhhHhccCCCCC
Confidence            347999999999999999999987653

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=5.4e-05  Score=58.60  Aligned_cols=28  Identities=32%  Similarity=0.419  Sum_probs=23.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFK   46 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~   46 (259)
                      .-.++|+|++|||||||++.|.|-..+.
T Consensus        26 Gei~~liGpsGsGKSTLl~~i~Gl~~p~   53 (232)
T d2awna2          26 GEFVVFVGPSGCGKSTLLRMIAGLETIT   53 (232)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCCCC
Confidence            3479999999999999999999876533

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=3.1e-05  Score=57.65  Aligned_cols=23  Identities=35%  Similarity=0.690  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +-|+|+||+|||||||++.|+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            45889999999999999999854

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.37  E-value=4.7e-05  Score=57.74  Aligned_cols=26  Identities=19%  Similarity=0.143  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      -.++|+|++|||||||++.|+|...+
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~gl~~p   53 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTISTYLKP   53 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhccccc
Confidence            46899999999999999999987653

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.35  E-value=0.0019  Score=53.50  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=18.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      +-+++|||++|||||+++..|.
T Consensus        43 k~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHH
Confidence            4568999999999999997765

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=5.9e-05  Score=56.65  Aligned_cols=83  Identities=16%  Similarity=0.177  Sum_probs=47.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCcccccCCCCCcceeeEEEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~   97 (259)
                      .+.+++|+|++|+|||+++..|...-.  .+..+.            ...+..+.-+|+..+........++...+...+
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri~--~~~vp~------------~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il  107 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRII--NGEVPE------------GLKGRRVLALDMGALVAGAKYRGEFEERLKGVL  107 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHH--HTCSCG------------GGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHHH--hCCCCH------------HHcCceEEEeeHHHHhccCCccHHHHHHHHHHH
Confidence            346899999999999999988763221  110000            133456667887666544444455555555555


Q ss_pred             hhcCC-CccEEEEEEeCC
Q 024985           98 GMAKD-GIHAVLLVFSVR  114 (259)
Q Consensus        98 ~~~~~-~~~~il~v~d~~  114 (259)
                      ..... .-++|||+=++.
T Consensus       108 ~e~~~~~~~iILfIDeih  125 (195)
T d1jbka_         108 NDLAKQEGNVILFIDELH  125 (195)
T ss_dssp             HHHHHSTTTEEEEEETGG
T ss_pred             HHHhcCCCcEEEEcchHH
Confidence            43322 224555554443

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=6.4e-05  Score=60.02  Aligned_cols=28  Identities=32%  Similarity=0.421  Sum_probs=24.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFK   46 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~   46 (259)
                      .-.++|+|++|||||||++.|+|...+.
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~Gl~~p~   89 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILGELEAS   89 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSSCCS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCCcCC
Confidence            4579999999999999999999876533

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.32  E-value=4.5e-05  Score=55.70  Aligned_cols=22  Identities=27%  Similarity=0.596  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ++|+|+|++||||||+.+.|..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999953

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.32  E-value=7.2e-05  Score=58.08  Aligned_cols=27  Identities=37%  Similarity=0.448  Sum_probs=23.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRRAFK   46 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~~~~   46 (259)
                      -.++++|++|||||||++.|.|-..+.
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~~p~   59 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLEEPT   59 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCC
Confidence            478999999999999999999877543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.31  E-value=5.5e-05  Score=59.50  Aligned_cols=28  Identities=32%  Similarity=0.322  Sum_probs=24.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFK   46 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~   46 (259)
                      .-.++++|++|||||||++.|+|...+.
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~gl~~p~   71 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPRFYDVT   71 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTSSCCS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhcCCcc
Confidence            4589999999999999999999876533

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.27  E-value=7.4e-05  Score=58.10  Aligned_cols=28  Identities=29%  Similarity=0.405  Sum_probs=24.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFK   46 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~   46 (259)
                      .-.++++|++|||||||++.|.|-..+.
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl~~p~   56 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGLEEPS   56 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCCCC
Confidence            3479999999999999999999887533

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.27  E-value=7.6e-05  Score=53.42  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..|+++|+|||||||+.+.|..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999863

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.26  E-value=7.7e-05  Score=58.14  Aligned_cols=28  Identities=29%  Similarity=0.449  Sum_probs=24.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFK   46 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~   46 (259)
                      .-.++|+|++|||||||++.|+|...+.
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~Gl~~p~   59 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAGLVRAQ   59 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence            3478999999999999999999887533

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=9e-05  Score=57.60  Aligned_cols=26  Identities=19%  Similarity=0.207  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++++|++|||||||++.|.|-..
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl~~   56 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLLER   56 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCcc
Confidence            35789999999999999999998764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.25  E-value=8.2e-05  Score=57.73  Aligned_cols=25  Identities=40%  Similarity=0.340  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           21 TLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .++++|++|||||||++.|.|-..+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~p   50 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVKP   50 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCC
Confidence            6789999999999999999987653

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=0.0089  Score=45.82  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..+.++|.|++|+||||++.++..
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999988864

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.23  E-value=7.1e-05  Score=57.74  Aligned_cols=27  Identities=30%  Similarity=0.342  Sum_probs=23.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAF   45 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~   45 (259)
                      .-.++++|++|||||||++.|.|-..+
T Consensus        26 Ge~~~liGpsGaGKSTll~~l~Gl~~p   52 (229)
T d3d31a2          26 GEYFVILGPTGAGKTLFLELIAGFHVP   52 (229)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence            347999999999999999999987653

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.22  E-value=0.00011  Score=57.19  Aligned_cols=28  Identities=25%  Similarity=0.215  Sum_probs=24.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFK   46 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~   46 (259)
                      .-.++|+|+.|||||||++.|+|...+.
T Consensus        28 Gei~glvG~nGaGKSTLl~~l~G~~~p~   55 (238)
T d1vpla_          28 GEIFGLIGPNGAGKTTTLRIISTLIKPS   55 (238)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            3478999999999999999999987543

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=5.8e-05  Score=57.48  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      .-|+|+||+|||||||++.|+...
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            468899999999999999997543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.18  E-value=0.00012  Score=53.43  Aligned_cols=24  Identities=21%  Similarity=0.459  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ...+|+|.|++||||||+.+.|..
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            346899999999999999999974

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=9.3e-05  Score=53.26  Aligned_cols=23  Identities=39%  Similarity=0.693  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      +..|+|+|++||||||+...|..
T Consensus         2 ~k~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           2 KRNIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999963

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.15  E-value=0.00014  Score=54.42  Aligned_cols=24  Identities=21%  Similarity=0.450  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      .+..|+|+|++||||||+...|..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            446889999999999999999864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.13  E-value=0.00015  Score=57.11  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRA   44 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~   44 (259)
                      .-.++|+|++|||||||++.|.|-..
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~Gl~~   53 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCINFLEK   53 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCcc
Confidence            35799999999999999999998764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.13  E-value=0.00013  Score=57.41  Aligned_cols=28  Identities=29%  Similarity=0.362  Sum_probs=23.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCccc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFK   46 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~   46 (259)
                      .-.++|+|++|||||||++.|+|...+.
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~Gl~~p~   57 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITGFLKAD   57 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCCCcCC
Confidence            3478999999999999999999986533

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.11  E-value=0.00012  Score=53.16  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..|+|.|++||||||+.+.|..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999974

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.11  E-value=8.2e-05  Score=57.85  Aligned_cols=29  Identities=21%  Similarity=0.297  Sum_probs=24.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRRAFKS   47 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~~~~~   47 (259)
                      .-.++++|++|||||||++.|.|-..+.+
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~gl~~p~~   59 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAGLDVPST   59 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSSCCSE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCcCCCC
Confidence            34799999999999999999999765433

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.0002  Score=52.03  Aligned_cols=26  Identities=31%  Similarity=0.530  Sum_probs=21.8

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      .+...-|+|+|++||||||+.+.|..
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34566788899999999999999863

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.0001  Score=57.12  Aligned_cols=25  Identities=36%  Similarity=0.445  Sum_probs=22.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      .-.++++|++|||||||++.|+|..
T Consensus        25 Gei~~iiG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          25 GEILHLVGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             TCEEECBCCTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3579999999999999999999853

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.06  E-value=0.00011  Score=53.54  Aligned_cols=21  Identities=43%  Similarity=0.653  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      |+|+|+|.+||||||+.+.|.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999885

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.06  E-value=0.00062  Score=53.03  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      +...|+|.|++|+|||++.++|.+
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhh
Confidence            345799999999999999999974

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.03  E-value=0.00015  Score=54.01  Aligned_cols=25  Identities=16%  Similarity=0.280  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      .+.+|+|+|++||||||+...|...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998643

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.02  E-value=0.00022  Score=53.05  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 024985           17 NAERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ..+..|++.|++|||||||.+.|.
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            356789999999999999999986

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.01  E-value=0.00021  Score=52.23  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=21.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 024985           17 NAERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      .....|+|+|.+||||||+...|.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999998886

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.00  E-value=0.00019  Score=52.26  Aligned_cols=22  Identities=18%  Similarity=0.249  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..|.++|.+|||||||++.|+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            3578999999999999999874

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.97  E-value=0.00027  Score=51.97  Aligned_cols=24  Identities=33%  Similarity=0.342  Sum_probs=20.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 024985           17 NAERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ..+.-|+++|.+||||||+...++
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345689999999999999999886

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.00019  Score=53.55  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 024985           21 TLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~   42 (259)
                      -|+|+|++|||||||++.|+..
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            3899999999999999999754

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.00032  Score=52.52  Aligned_cols=26  Identities=15%  Similarity=0.404  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ...+.|+|+|++||||||+...|...
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999753

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.94  E-value=0.00022  Score=52.79  Aligned_cols=23  Identities=35%  Similarity=0.473  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      .-|+|+|++|||||||++.|...
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            46889999999999999999754

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.0033  Score=49.07  Aligned_cols=23  Identities=30%  Similarity=0.644  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      +..|+|.|++|+|||+++++|..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            45699999999999999999973

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.91  E-value=0.00024  Score=52.38  Aligned_cols=21  Identities=38%  Similarity=0.681  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 024985           21 TLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~   41 (259)
                      +|+|+|+|||||||+...|..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998853

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.89  E-value=0.00036  Score=50.78  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ...|+|.|++||||||+.+.|...
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            356889999999999999999754

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.87  E-value=0.00035  Score=52.19  Aligned_cols=27  Identities=22%  Similarity=0.336  Sum_probs=22.8

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +....+|+|+|+|||||||+...|...
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            345679999999999999999999743

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00023  Score=52.10  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      +.|+|.|++|+|||||+..+..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHH
Confidence            4699999999999999999864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.85  E-value=0.00034  Score=52.07  Aligned_cols=22  Identities=27%  Similarity=0.444  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ..+|+|+|+|||||||+...|.
T Consensus         3 ~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999987

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.84  E-value=0.00086  Score=52.67  Aligned_cols=20  Identities=35%  Similarity=0.645  Sum_probs=17.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSI   39 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l   39 (259)
                      ++|++.|+.|+||||+.-.|
T Consensus         2 r~Iai~gKGGvGKTT~a~nL   21 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNL   21 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHH
Confidence            58999999999999998543

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.84  E-value=0.00025  Score=51.51  Aligned_cols=20  Identities=30%  Similarity=0.615  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~   40 (259)
                      +|+|+|.+||||||+...|.
T Consensus         2 ~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            69999999999999999885

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00032  Score=52.31  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ++.|+|+|++||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.81  E-value=0.00032  Score=51.48  Aligned_cols=21  Identities=19%  Similarity=0.479  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      ..|++.|.+||||||+++.|.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999985

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.78  E-value=0.00026  Score=57.53  Aligned_cols=23  Identities=30%  Similarity=0.534  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      .+|+++|++|||||||+|+|++.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            56999999999999999999853

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.78  E-value=0.00034  Score=51.67  Aligned_cols=22  Identities=32%  Similarity=0.668  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 024985           21 TLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +|+|+|+|||||||+...|...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998743

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.77  E-value=0.0004  Score=50.46  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ..|+|.|.+||||||+.+.|...
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46888899999999999998643

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.00033  Score=52.35  Aligned_cols=21  Identities=33%  Similarity=0.536  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 024985           22 LVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        22 I~l~G~~g~GKSslin~l~~~   42 (259)
                      |+|+|++|||||||++.|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999998643

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.0036  Score=48.13  Aligned_cols=21  Identities=19%  Similarity=0.398  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 024985           21 TLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~   41 (259)
                      .++|.|++|+||||++..+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            588999999999999988753

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.75  E-value=0.00032  Score=54.93  Aligned_cols=26  Identities=23%  Similarity=0.511  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ..+.-|+|.|+||+|||||..+|.+.
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34556999999999999999999754

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.74  E-value=0.00038  Score=51.31  Aligned_cols=21  Identities=24%  Similarity=0.498  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 024985           21 TLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~   41 (259)
                      +|+|+|++||||||+...|..
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999863

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00042  Score=52.51  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ++.|++.|++|||||||.+.|.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            5789999999999999999885

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.0003  Score=52.21  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 024985           18 AERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ....|+|+|.|||||||+.+.|.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45688999999999999999995

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00044  Score=50.90  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 024985           21 TLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~   41 (259)
                      +|+|+|++||||||+...|..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999988863

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.66  E-value=0.00051  Score=51.27  Aligned_cols=25  Identities=24%  Similarity=0.541  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ..+.|+|+|+|||||||+...|...
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999999644

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.00058  Score=50.32  Aligned_cols=22  Identities=27%  Similarity=0.524  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      .+|+|+|++||||||+...|..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999964

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.57  E-value=0.00053  Score=50.04  Aligned_cols=21  Identities=24%  Similarity=0.575  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      ..|+|+|.+||||||+.+.|.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHH
Confidence            358899999999999999985

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.55  E-value=0.00048  Score=53.15  Aligned_cols=25  Identities=28%  Similarity=0.401  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ..+.++|.|+||+||||+++++.+.
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999999743

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.53  E-value=0.00074  Score=50.30  Aligned_cols=25  Identities=24%  Similarity=0.317  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..+..|++-|..||||||+++.|..
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4456899999999999999999964

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.46  E-value=0.00077  Score=49.54  Aligned_cols=21  Identities=24%  Similarity=0.324  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      +.|+|.|.+||||||+++.|.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            357788999999999999995

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.35  E-value=0.00095  Score=51.31  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      .+.++|.||||+||||+.+.|..
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHh
Confidence            35699999999999999999874

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.31  E-value=0.0042  Score=47.30  Aligned_cols=45  Identities=13%  Similarity=0.038  Sum_probs=27.9

Q ss_pred             CccEEEEEEeCCC-CCCHhHH-HHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          103 GIHAVLLVFSVRN-RFSEEGG-AAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       103 ~~~~il~v~d~~~-~~~~~~~-~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      .+|.+++|+.+.. .+...-. ++|-.. ...+.    +.+||+||+|+.++
T Consensus        10 NiD~vliV~s~~~P~~~~~~ldR~Lv~a-~~~~i----~pvIvlnK~DL~~~   56 (225)
T d1u0la2          10 NVDQVILVVTVKMPETSTYIIDKFLVLA-EKNEL----ETVMVINKMDLYDE   56 (225)
T ss_dssp             SCCEEEEEECSSTTCCCHHHHHHHHHHH-HHTTC----EEEEEECCGGGCCH
T ss_pred             cCCEEEEEEeCCCCCCCHHHHHHHHHHH-HHcCC----CEEEEEeCcccCCH
Confidence            5688999998763 3443321 222222 22333    89999999999865

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.29  E-value=0.0011  Score=50.66  Aligned_cols=63  Identities=14%  Similarity=0.044  Sum_probs=35.6

Q ss_pred             EEEEEeCCCCCCCCCChHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCH-hHHHHHHHHHHHhcccccCeEE-EEEeCC
Q 024985           70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMAKDGIHAVLLVFSVRNRFSE-EGGAAIHSLESLFGKKVFDYMI-VVFTGG  147 (259)
Q Consensus        70 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~-~~~~~l~~l~~~~~~~~~~~~i-vV~nk~  147 (259)
                      .++++|||+....         .....    ...+|.+++|+..+ ..+- ...+.++.+.+ .+.    |+. +|+|+.
T Consensus       113 d~IiiD~~~~~~~---------~~~~~----l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~-~~~----~~~giv~N~~  173 (237)
T d1g3qa_         113 DFILIDCPAGLQL---------DAMSA----MLSGEEALLVTNPE-ISCLTDTMKVGIVLKK-AGL----AILGFVLNRY  173 (237)
T ss_dssp             SEEEEECCSSSSH---------HHHHH----HTTCSEEEEEECSC-HHHHHHHHHHHHHHHH-TTC----EEEEEEEEEE
T ss_pred             CEEEEcccccccc---------cchhh----hhhhhccccccccc-ceecchhhHHHHHHhh-hhh----hhhhhhhccc
Confidence            5999999984321         12222    23469999999876 2221 22334444443 222    443 889998


Q ss_pred             CCCC
Q 024985          148 NELE  151 (259)
Q Consensus       148 D~~~  151 (259)
                      +...
T Consensus       174 ~~~~  177 (237)
T d1g3qa_         174 GRSD  177 (237)
T ss_dssp             TSCT
T ss_pred             cccc
Confidence            8654

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.27  E-value=0.0013  Score=49.68  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=21.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 024985           17 NAERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      +....|+|.|.|||||||+.+.|.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999986

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.26  E-value=0.0014  Score=50.87  Aligned_cols=25  Identities=28%  Similarity=0.413  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      .....++|.|++|+|||++++.|..
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999874

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.20  E-value=0.002  Score=49.73  Aligned_cols=26  Identities=23%  Similarity=0.363  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ...+.++|.|++|+||||++.+|...
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999999754

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.17  E-value=0.0034  Score=49.66  Aligned_cols=20  Identities=35%  Similarity=0.591  Sum_probs=16.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 024985           20 RTLVLVGRTGNGKSATGNSI   39 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l   39 (259)
                      .+|++-|+.|+||||+.-.|
T Consensus         3 r~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            57889999999999987443

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.17  E-value=0.0012  Score=53.13  Aligned_cols=24  Identities=21%  Similarity=0.531  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ++..|+|+||||+|||.|.++|.+
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhh
Confidence            446799999999999999999974

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.14  E-value=0.0074  Score=43.21  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      +...|+|-|+-|||||||+..++..-
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhc
Confidence            44679999999999999999987543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.12  E-value=0.0018  Score=47.97  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 024985           18 AERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      .+..|+|.|.+||||||+.+.|.
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45688999999999999999885

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.0021  Score=51.49  Aligned_cols=27  Identities=19%  Similarity=0.268  Sum_probs=22.4

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHh
Q 024985           14 SPSNAERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        14 s~~~~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      .....++.|++.|.+|||||||.+.|.
T Consensus        75 ~~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          75 NGQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             C-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            345667899999999999999988874

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.04  E-value=0.002  Score=49.24  Aligned_cols=23  Identities=22%  Similarity=0.421  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +.++|.|++|+||||++..|...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            56999999999999999998753

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.03  E-value=0.00099  Score=52.89  Aligned_cols=24  Identities=17%  Similarity=0.351  Sum_probs=17.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 024985           17 NAERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...+.|++.|.+||||||+.++|.
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHH
Confidence            455789999999999999999874

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.0031  Score=49.20  Aligned_cols=24  Identities=25%  Similarity=0.523  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +.-|+|.|++|+|||++++++.+.
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            456999999999999999999743

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.0029  Score=47.67  Aligned_cols=24  Identities=17%  Similarity=0.313  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      |.|++.|++||||||+...|....
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            588999999999999999986443

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.73  E-value=0.0031  Score=48.89  Aligned_cols=22  Identities=32%  Similarity=0.643  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      .-|+|.|++|+|||+++++|.+
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            4699999999999999999984

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.0056  Score=46.02  Aligned_cols=21  Identities=19%  Similarity=0.251  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      .-+++.|++|+||||++..+.
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a   45 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALS   45 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHH
Confidence            359999999999999998765

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.62  E-value=0.0034  Score=47.84  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +.++|.|++|+||||++..++..
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            45899999999999999998754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.58  E-value=0.0034  Score=48.65  Aligned_cols=22  Identities=18%  Similarity=0.178  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...|+|.|++|+|||||++.++
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~   50 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGI   50 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHH
Confidence            3578899999999999999876

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.54  E-value=0.03  Score=42.09  Aligned_cols=20  Identities=30%  Similarity=0.680  Sum_probs=16.1

Q ss_pred             eEEEEE-cCCCCcHHHHHHHH
Q 024985           20 RTLVLV-GRTGNGKSATGNSI   39 (259)
Q Consensus        20 ~~I~l~-G~~g~GKSslin~l   39 (259)
                      +.|++. |+.|+||||+.-.|
T Consensus         2 kvIav~s~KGGvGKTtia~nl   22 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANL   22 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHH
Confidence            457777 88999999998654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.51  E-value=0.003  Score=53.35  Aligned_cols=24  Identities=21%  Similarity=0.531  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      .+.+|+++||||||||-|.++|.+
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccccEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999864

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.44  E-value=0.0041  Score=47.14  Aligned_cols=22  Identities=18%  Similarity=0.409  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      +.++|.|++|+||||+++.+..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            4589999999999999988864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.42  E-value=0.0026  Score=49.65  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 024985           22 LVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        22 I~l~G~~g~GKSslin~l~~~   42 (259)
                      +++.|++|+|||++++++...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455699999999999998744

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.41  E-value=0.0043  Score=48.62  Aligned_cols=25  Identities=20%  Similarity=0.395  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~~   43 (259)
                      ...|+|.|++|+|||+|++++.+..
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            4579999999999999999997443

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.39  E-value=0.0047  Score=46.56  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +.+|++-|++||||||+...|...
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            356888899999999999998643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.0061  Score=48.99  Aligned_cols=27  Identities=19%  Similarity=0.325  Sum_probs=22.4

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHh
Q 024985           14 SPSNAERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        14 s~~~~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ++..+...++++|++|+|||.|..+|.
T Consensus        47 ~~~~p~~~~lf~Gp~GvGKT~lak~la   73 (315)
T d1r6bx3          47 HEHKPVGSFLFAGPTGVGKTEVTVQLS   73 (315)
T ss_dssp             CTTSCSEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCCceEEEEECCCcchhHHHHHHHH
Confidence            344455689999999999999999986

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.35  E-value=0.0046  Score=47.23  Aligned_cols=46  Identities=24%  Similarity=0.178  Sum_probs=27.8

Q ss_pred             CccEEEEEEeCCCC-CCHhHHHHHHHHHHHhcccccCeEEEEEeCCCCCCC
Q 024985          103 GIHAVLLVFSVRNR-FSEEGGAAIHSLESLFGKKVFDYMIVVFTGGNELED  152 (259)
Q Consensus       103 ~~~~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivV~nk~D~~~~  152 (259)
                      .+|.+++|+.+.++ +...-.+-+=.+....+    .+.+||+||+|+..+
T Consensus        10 NiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~----i~pvIvlnK~DL~~~   56 (231)
T d1t9ha2          10 NVDQAVLVFSAVQPSFSTALLDRFLVLVEAND----IQPIICITKMDLIED   56 (231)
T ss_dssp             CCCEEEEEEESTTTTCCHHHHHHHHHHHHTTT----CEEEEEEECGGGCCC
T ss_pred             ccCEEEEEEECCCCCCCHHHHHHHHHHHHHcC----CCEEEEEeccccccc
Confidence            56888999987533 44332221112222223    288899999999866

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.33  E-value=0.0067  Score=47.93  Aligned_cols=25  Identities=28%  Similarity=0.380  Sum_probs=21.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHh
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...++.|+|.|.+|||||||...|.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            3456789999999999999998774

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.29  E-value=0.0049  Score=46.74  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +.++|.|++|+||||++..|...
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHH
Confidence            35899999999999999998743

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.00094  Score=49.47  Aligned_cols=20  Identities=35%  Similarity=0.489  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~   40 (259)
                      ..+|+|+.||||||++.+|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            45678999999999999984

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.19  E-value=0.006  Score=50.75  Aligned_cols=25  Identities=32%  Similarity=0.408  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      +..-|++.|++||||||++.+++..
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhh
Confidence            3467999999999999999998753

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0047  Score=47.07  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      .+.|+|-|..||||||+++.|..
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999864

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.12  E-value=0.0063  Score=45.66  Aligned_cols=21  Identities=33%  Similarity=0.537  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      +.|+|.|.+||||||+.+.|.
T Consensus         4 ~iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH
Confidence            578999999999999999875

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.0068  Score=46.30  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      +..|+|=|..||||||+++.|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            56899999999999999999963

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.06  E-value=0.0064  Score=49.87  Aligned_cols=24  Identities=25%  Similarity=0.567  Sum_probs=21.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 024985           17 NAERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      .++.+++++||||||||-|..+|.
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcceeeeCCCCccHHHHHHHHH
Confidence            356689999999999999999985

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.99  E-value=0.0071  Score=45.22  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      +.|+|.|.+||||||+.+.|-
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            678999999999999999885

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.93  E-value=0.0063  Score=45.32  Aligned_cols=20  Identities=20%  Similarity=0.346  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~   40 (259)
                      .|+|-|..||||||++..|.
T Consensus         2 lI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999886

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.84  E-value=0.008  Score=43.91  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..-|++.|++|+||||+.-.|..
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999988874

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.83  E-value=0.0077  Score=43.97  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..-|++.|++|+||||+.-.|..
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            35689999999999999988763

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.68  E-value=0.0077  Score=49.33  Aligned_cols=23  Identities=22%  Similarity=0.427  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      +.-+++.||||+|||+|.++|.+
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCeEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.58  E-value=0.0058  Score=48.46  Aligned_cols=19  Identities=37%  Similarity=0.573  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 024985           21 TLVLVGRTGNGKSATGNSI   39 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l   39 (259)
                      --+|+|+.||||||++.+|
T Consensus        26 lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHH
Confidence            3467899999999999988

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.012  Score=44.06  Aligned_cols=21  Identities=29%  Similarity=0.599  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      .-|++-|..||||||+++.|.
T Consensus         3 kfIviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            468899999999999999886

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.011  Score=43.78  Aligned_cols=23  Identities=13%  Similarity=0.174  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ...+++.|+||+|||+|...++.
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            34788999999999999988763

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.36  E-value=0.0089  Score=49.36  Aligned_cols=19  Identities=32%  Similarity=0.529  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 024985           22 LVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        22 I~l~G~~g~GKSslin~l~   40 (259)
                      -+++|+.|+|||+++.||.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3577999999999999983

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.25  E-value=0.012  Score=42.58  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..-|++.|++|+||||+.-.+..
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            35689999999999999977763

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.048  Score=40.32  Aligned_cols=21  Identities=19%  Similarity=0.419  Sum_probs=17.7

Q ss_pred             eEEEEEcCC-CCcHHHHHHHHh
Q 024985           20 RTLVLVGRT-GNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~-g~GKSslin~l~   40 (259)
                      +++.+.|.. ||||||+.-.|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            578999995 999999987663

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.017  Score=43.32  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      .-|+|-|..||||||++..|.
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            458888999999999988875

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.98  E-value=0.019  Score=45.94  Aligned_cols=25  Identities=20%  Similarity=0.453  Sum_probs=20.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHh
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ..+.-.++++|++|+|||.+...|.
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la   74 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLA   74 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchHHHHHHHHH
Confidence            3444578899999999999998875

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.58  E-value=0.018  Score=43.58  Aligned_cols=23  Identities=22%  Similarity=0.200  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 024985           20 RTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ..++|.|++|+|||+|...++-.
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            47889999999999999887643

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.54  E-value=0.019  Score=43.21  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC
Q 024985           22 LVLVGRTGNGKSATGNSILGRR   43 (259)
Q Consensus        22 I~l~G~~g~GKSslin~l~~~~   43 (259)
                      +.+.|++|+|||-|++++....
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999997543

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.40  E-value=0.023  Score=43.19  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 024985           20 RTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..|+|.|..||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999954

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.26  E-value=0.021  Score=42.40  Aligned_cols=25  Identities=32%  Similarity=0.409  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      .+-.+++.|++++|||+|+++|+..
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHHH
Confidence            3467999999999999999988643

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.16  E-value=0.032  Score=43.60  Aligned_cols=25  Identities=36%  Similarity=0.526  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ....|+|.|..|+|||||...+++.
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999988743

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.10  E-value=0.013  Score=47.20  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      -.|+++|++|+|||+|+.++.
T Consensus        29 h~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHH
Confidence            369999999999999999875

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.95  E-value=0.025  Score=42.97  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      ..++|.|+||+|||+|...++
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHH
Confidence            478999999999999997765

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.92  E-value=0.026  Score=43.85  Aligned_cols=21  Identities=19%  Similarity=0.262  Sum_probs=17.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      -.++|.|+||+|||+|+..+.
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            467899999999999986664

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.83  E-value=0.031  Score=37.77  Aligned_cols=25  Identities=12%  Similarity=0.113  Sum_probs=22.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHh
Q 024985           16 SNAERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        16 ~~~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      +++.+.|++-|-+|+||||+.++|.
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHH
Confidence            3567899999999999999999996

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.83  E-value=0.024  Score=47.04  Aligned_cols=22  Identities=36%  Similarity=0.507  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...++++|.||+|||++++.++
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHH
Confidence            4679999999999999997765

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.70  E-value=0.87  Score=34.96  Aligned_cols=22  Identities=18%  Similarity=0.359  Sum_probs=18.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...+.+.|++|+|||+|.-.+.
T Consensus        60 g~i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          60 GRVIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             SSEEEEECSSSSSHHHHHHHHH
T ss_pred             ceeEEEecCCCcHHHHHHHHHH
Confidence            3578899999999999975554

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=92.63  E-value=0.03  Score=44.81  Aligned_cols=22  Identities=14%  Similarity=0.333  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 024985           21 TLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~~~   42 (259)
                      .+++.|+||+|||.|..+|.+.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHH
Confidence            4555799999999999999754

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.59  E-value=0.031  Score=42.31  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=18.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      .-.++|.|+||+|||+|...++
T Consensus        26 gsl~li~G~pGsGKT~l~~qia   47 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFV   47 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            3478899999999999997775

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.59  E-value=0.037  Score=41.44  Aligned_cols=22  Identities=18%  Similarity=0.376  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ..-|++-|.-||||||+++.|.
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHH
Confidence            4569999999999999999885

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.58  E-value=0.031  Score=42.17  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=18.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      .-.++|.|++|+|||+|...+.
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            3578899999999999997775

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.56  E-value=0.03  Score=44.97  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ..+|.|=|..|+||||+++.|..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            36799999999999999999964

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.52  E-value=0.026  Score=45.38  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ..+|+|=|.-||||||+++.|...
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999743

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.50  E-value=0.66  Score=34.84  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=18.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...+++-|+..+||||++.++.
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHH
Confidence            4568899999999999999863

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.47  E-value=0.038  Score=44.43  Aligned_cols=25  Identities=32%  Similarity=0.363  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 024985           18 AERTLVLVGRTGNGKSATGNSILGR   42 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l~~~   42 (259)
                      ...+|.|=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            3478999999999999999999754

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.14  E-value=0.047  Score=37.40  Aligned_cols=24  Identities=25%  Similarity=0.232  Sum_probs=18.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 024985           17 NAERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~   40 (259)
                      +.....+|.+++|+|||+++-.++
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHH
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHH
Confidence            345677889999999999885443

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.80  E-value=0.057  Score=41.98  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=21.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 024985           17 NAERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      ...-.+++.|++++|||+|+++|..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            3456788999999999999999863

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=91.80  E-value=0.052  Score=40.55  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=17.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...++|.|++|+|||+|.-.++
T Consensus        26 G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            3578889999999999986543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=0.068  Score=40.36  Aligned_cols=22  Identities=14%  Similarity=0.169  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...++|.|++|+|||+|.-.++
T Consensus        37 G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          37 MAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3578999999999999998776

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.22  E-value=0.053  Score=41.81  Aligned_cols=21  Identities=29%  Similarity=0.270  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      ...+|+|++|+|||+|+-.|.
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHH
Confidence            457789999999999997664

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=90.30  E-value=0.052  Score=42.41  Aligned_cols=16  Identities=19%  Similarity=0.372  Sum_probs=13.8

Q ss_pred             EEEEEcCCCCcHHHHH
Q 024985           21 TLVLVGRTGNGKSATG   36 (259)
Q Consensus        21 ~I~l~G~~g~GKSsli   36 (259)
                      .++|+|.+|+||||++
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4788899999999875

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=90.02  E-value=0.065  Score=42.23  Aligned_cols=16  Identities=25%  Similarity=0.505  Sum_probs=14.0

Q ss_pred             EEEEEcCCCCcHHHHH
Q 024985           21 TLVLVGRTGNGKSATG   36 (259)
Q Consensus        21 ~I~l~G~~g~GKSsli   36 (259)
                      .++|.|.+|+||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4788899999999876

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.09  E-value=0.13  Score=39.87  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=18.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHH
Q 024985           17 NAERTLVLVGRTGNGKSATGNSI   39 (259)
Q Consensus        17 ~~~~~I~l~G~~g~GKSslin~l   39 (259)
                      +.++.|++.|+.|+||||+.-+|
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHH
T ss_pred             CCCeEEEEECCCcChHHHHHHHH
Confidence            34567889999999999977554

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=88.81  E-value=0.12  Score=40.38  Aligned_cols=23  Identities=17%  Similarity=0.157  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 024985           19 ERTLVLVGRTGNGKSATGNSILG   41 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~~   41 (259)
                      .-+++++|.+|+|||+|+..|..
T Consensus        43 GQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          43 GQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             TCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCeeeEeCCCCCCHHHHHHHHHH
Confidence            46899999999999999988764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=88.12  E-value=0.15  Score=41.19  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=17.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHH
Q 024985           19 ERTLVLVGRTGNGKSATGNSI   39 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l   39 (259)
                      ....+|.|++|+||||++..+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            467888999999999988543

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=87.40  E-value=2  Score=31.82  Aligned_cols=20  Identities=20%  Similarity=0.205  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 024985           21 TLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin~l~   40 (259)
                      .++|-|+..+||||++.++.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhH
Confidence            57899999999999998863

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=86.20  E-value=0.25  Score=37.91  Aligned_cols=22  Identities=27%  Similarity=0.566  Sum_probs=17.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATGNSI   39 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSslin~l   39 (259)
                      ....|++.|+.|+||||+.-.|
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH
Confidence            3456777799999999986554

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.36  E-value=0.26  Score=37.54  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      ..|+|.|++|+||+.+..+|.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih   44 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIH   44 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHH
Confidence            358899999999999999996

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=82.77  E-value=0.35  Score=37.15  Aligned_cols=21  Identities=19%  Similarity=0.401  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 024985           20 RTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        20 ~~I~l~G~~g~GKSslin~l~   40 (259)
                      ..+.+.|++|+|||||.-.++
T Consensus        55 ~itei~G~~gsGKTtl~l~~~   75 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVI   75 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEecCCCcHHHHHHHHHH
Confidence            578899999999999986665

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.67  E-value=0.39  Score=37.11  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=19.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 024985           19 ERTLVLVGRTGNGKSATGNSIL   40 (259)
Q Consensus        19 ~~~I~l~G~~g~GKSslin~l~   40 (259)
                      .-+++++|.+|+|||+|+-.+.
T Consensus        68 GQr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          68 GGKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEeeCCCCCCHHHHHHHHH
Confidence            4589999999999999987765

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=82.27  E-value=0.27  Score=38.72  Aligned_cols=17  Identities=29%  Similarity=0.550  Sum_probs=14.7

Q ss_pred             eEEEEEcCCCCcHHHHH
Q 024985           20 RTLVLVGRTGNGKSATG   36 (259)
Q Consensus        20 ~~I~l~G~~g~GKSsli   36 (259)
                      -.-+++|-||+|||||-
T Consensus        15 ~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          15 DVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             CEEEEECSTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            35689999999999976

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=81.76  E-value=0.28  Score=38.69  Aligned_cols=17  Identities=29%  Similarity=0.550  Sum_probs=14.8

Q ss_pred             eEEEEEcCCCCcHHHHH
Q 024985           20 RTLVLVGRTGNGKSATG   36 (259)
Q Consensus        20 ~~I~l~G~~g~GKSsli   36 (259)
                      -.-+++|-||+|||||-
T Consensus        15 ~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          15 DVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             CEEEEEECTTSCHHHHT
T ss_pred             CEEEEEccCCCCccccc
Confidence            45789999999999976

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=81.69  E-value=0.28  Score=34.29  Aligned_cols=17  Identities=41%  Similarity=0.722  Sum_probs=14.8

Q ss_pred             ceEEEEEcCCCC-cHHHH
Q 024985           19 ERTLVLVGRTGN-GKSAT   35 (259)
Q Consensus        19 ~~~I~l~G~~g~-GKSsl   35 (259)
                      +.+|+++|.||+ |++||
T Consensus         2 pK~I~IlGsTGSIG~~tL   19 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTL   19 (150)
T ss_dssp             CEEEEEETTTSHHHHHHH
T ss_pred             CcEEEEECCCcHHHHHHH
Confidence            579999999998 88875

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=80.34  E-value=0.29  Score=32.77  Aligned_cols=19  Identities=32%  Similarity=0.176  Sum_probs=14.7

Q ss_pred             CceEEEEEcCCCCcHHHHH
Q 024985           18 AERTLVLVGRTGNGKSATG   36 (259)
Q Consensus        18 ~~~~I~l~G~~g~GKSsli   36 (259)
                      ...+++|.+++|+|||...
T Consensus         6 ~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTH
T ss_pred             cCCcEEEEcCCCCChhHHH
Confidence            3457888899999999443

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.28  E-value=0.35  Score=38.19  Aligned_cols=17  Identities=29%  Similarity=0.548  Sum_probs=14.8

Q ss_pred             eEEEEEcCCCCcHHHHH
Q 024985           20 RTLVLVGRTGNGKSATG   36 (259)
Q Consensus        20 ~~I~l~G~~g~GKSsli   36 (259)
                      -.-+++|-||+|||||-
T Consensus        15 d~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          15 DVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             CEEEEECCTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            35679999999999987

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.21  E-value=0.48  Score=34.15  Aligned_cols=17  Identities=29%  Similarity=0.307  Sum_probs=13.7

Q ss_pred             EEEEEcCCCCcHHHHHH
Q 024985           21 TLVLVGRTGNGKSATGN   37 (259)
Q Consensus        21 ~I~l~G~~g~GKSslin   37 (259)
                      ++++++++|+|||.+.-
T Consensus        25 n~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             CEEEECCTTSCHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHH
Confidence            57889999999996433