Citrus Sinensis ID: 024997

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISKE
Secondary Structure (PSIPRED)
cccccccHHHHHHccccccEEEccccccccccccccEEEEEccccccccHHHHHHHccccEEEEEEEcccccccccccccccccEEEEEcccccccccccEEEcccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHccEEccccccccccccEEEEEccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHccEccEEEEEEHHHHcccccHHHEEEEEEcccccccccccccccccccEEEEEccccccccccccccEcccEEEEEHHHHcccHHHccEEEEEccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEccccEEEcccccEEEEEEccHHHccHHHHHHHccEEcEEHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mpfyplyqeqtdyfesvdykfegeanlwgnassdtHLVEFvtapnnpdgqmnkavlkgpyaksiydhayfwphfapipapadeELMIFTISKLtghagsrfgwavIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCtyfkkirppspayawvkcereedkdcYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISKE
Flexible Loop (DISEMBL)
MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAkiigregkkfrAEARFVRlsllksqddfdlLLHRLDELISKE
Low Complexity Region (SEG)
MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISKE
Disordered region (IsUnstruct)
***YPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAP******MNKAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLD******
Disordered Region (DISOPRED)
MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELI***
Disordered Region (DISEMBL)
MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISKE
Disordered Region (DISPRO)
MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q9FE98	457	Tryptophan aminotransfera	yes	no	1.0	0.566	0.583	5e-93
Q93Z38	463	Tryptophan aminotransfera	no	no	1.0	0.559	0.564	8e-92
Q01594	486	Alliin lyase 1 OS=Allium	N/A	no	0.976	0.520	0.477	3e-72
Q41233	473	Alliin lyase 2 OS=Allium	N/A	no	0.976	0.534	0.469	8e-72
P31756	447	Alliin lyase (Fragment) O	N/A	no	0.976	0.565	0.469	1e-71
P31757	479	Alliin lyase OS=Allium ce	N/A	no	0.976	0.528	0.469	5e-71
Q9LR29	388	Tryptophan aminotransfera	no	no	0.953	0.636	0.398	1e-52
Q9S7N2	391	Tryptophan aminotransfera	no	no	0.949	0.629	0.405	2e-52
Q94A02	440	Tryptophan aminotransfera	no	no	0.953	0.561	0.406	2e-51
Q58365	373	Histidinol-phosphate amin	yes	no	0.544	0.378	0.269	0.0005

>sp|Q9FE98|TAR3_ARATH Tryptophan aminotransferase-related protein 3 OS=Arabidopsis thaliana GN=TAR3 PE=3 SV=1

 Score =  340 bits (872), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 153/262 (58%), Positives = 205/262 (78%), Gaps = 3/262 (1%)

Query: 1   MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSD---THLVEFVTAPNNPDGQMNKAVLK 57
           +P+Y LY++Q D+F S + KFEG+A+ W  +  +     ++E VT+PNNPDG++ +AVL 
Sbjct: 189 VPYYNLYKQQADFFNSTNLKFEGDASAWKRSERNDDIKQVIEIVTSPNNPDGKLKRAVLD 248

Query: 58  GPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSA 117
           GP  K I+D+AY+WP+F+PI   ADE+L +F++SK TGHAGSRFGWA++K++ VY++M  
Sbjct: 249 GPNVKYIHDYAYYWPYFSPITRQADEDLSLFSLSKTTGHAGSRFGWALVKEKTVYEKMKI 308

Query: 118 YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQ 177
           YISL++MGVSR+ QLRA +LLKVV+ DGGN IF FGY T+KKRWE L+KI S+S RFSL+
Sbjct: 309 YISLSSMGVSRDTQLRALQLLKVVIGDGGNEIFRFGYGTLKKRWEILNKIFSMSTRFSLE 368

Query: 178 EIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLS 237
            I P+YC YFKK+R  +P+YAWVKCER ED DCY I KAAKI GR G+ F ++ RFVRLS
Sbjct: 369 TIKPEYCNYFKKVREFTPSYAWVKCERPEDTDCYEIFKAAKITGRNGEMFGSDERFVRLS 428

Query: 238 LLKSQDDFDLLLHRLDELISKE 259
           L++SQDDFD L+  L + +SKE
Sbjct: 429 LIRSQDDFDQLIAMLKKFVSKE 450

Probable aminotransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q93Z38|TAR4_ARATH Tryptophan aminotransferase-related protein 4 OS=Arabidopsis thaliana GN=TAR4 PE=2 SV=2

 Score =  336 bits (862), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 148/262 (56%), Positives = 200/262 (76%), Gaps = 3/262 (1%)

Query: 1   MPFYPLYQEQTDYFESVDYKFEGEANLW---GNASSDTHLVEFVTAPNNPDGQMNKAVLK 57
           +P+Y +Y++Q ++F+S   KFEG A+ W   G   + T ++E VT+PNNPDG++ +AVL 
Sbjct: 191 IPYYAMYKDQAEFFDSAHLKFEGNASAWKQSGRNDNITQVIEVVTSPNNPDGKLKRAVLD 250

Query: 58  GPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSA 117
           GP  K+++D+AY+WPHF+PI  P DE+L +F++SK TGHAGSRFGW ++KD+A+Y++M  
Sbjct: 251 GPNVKTLHDYAYYWPHFSPITHPVDEDLSLFSLSKTTGHAGSRFGWGLVKDKAIYEKMDR 310

Query: 118 YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQ 177
           +I L +MGVS+E QL   +LLKVV+ DGGN IF FGY T+KKRWE L+KI S+S RFSLQ
Sbjct: 311 FIRLTSMGVSKETQLHVLQLLKVVVGDGGNEIFSFGYGTVKKRWETLNKIFSMSTRFSLQ 370

Query: 178 EIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLS 237
            I P+YC YFKK+R  +P+YAWVKCER ED +CY I +AAKI GR G  F +E RFVRLS
Sbjct: 371 TIKPEYCNYFKKVREFTPSYAWVKCERPEDTNCYEIFRAAKITGRNGNVFGSEERFVRLS 430

Query: 238 LLKSQDDFDLLLHRLDELISKE 259
           L++SQDDFD L+  L +L+  E
Sbjct: 431 LIRSQDDFDQLIAMLKKLVYHE 452

Probable aminotransferase.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q01594|ALLN1_ALLSA Alliin lyase 1 OS=Allium sativum PE=1 SV=1

 Score =  271 bits (694), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 125/262 (47%), Positives = 182/262 (69%), Gaps = 9/262 (3%)

Query: 2   PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYA 61
           PFYP+++EQT YF    Y + G A  + N S+    +E VT+PNNP+G +  AV+KG   
Sbjct: 201 PFYPVFREQTKYFNKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKG--C 258

Query: 62  KSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL 121
           KSIYD  Y+WPH+ PI   ADE++++FT+SK TGH+GSRFGWA+IKDE+VY  +  Y++ 
Sbjct: 259 KSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTK 318

Query: 122 NTMGVSRECQLRAFKLLKVVL------EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFS 175
           NT G  RE QLR+ K+LK V+      +    ++  FG+  +++RW N++ ++  S+RFS
Sbjct: 319 NTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFS 378

Query: 176 LQEI-APQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFV 234
            QE+   +YC YF+++RPPSP+YAWVKCE EEDKDCY   +  +I  + G  F A +R+V
Sbjct: 379 YQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYV 438

Query: 235 RLSLLKSQDDFDLLLHRLDELI 256
           RLSL+K+QDDFD L++ L +++
Sbjct: 439 RLSLIKTQDDFDQLMYYLKDMV 460

Able to cleave the C-S bond of sulfoxide derivatives of Cys to produce allicin, thus giving rise to all sulfur compounds which are responsible for most of the properties of garlic, such as the specific smell and flavor as well as the health benefits like blood lipid or blood pressure lowering.

Allium sativum (taxid: 4682)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

>sp|Q41233|ALLN2_ALLSA Alliin lyase 2 OS=Allium sativum PE=1 SV=1

 Score =  270 bits (690), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 123/262 (46%), Positives = 182/262 (69%), Gaps = 9/262 (3%)

Query: 2   PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYA 61
           PFYP+++EQT YF+   Y + G A  + N S+    +E VT+PNNP+G +  AV+KG   
Sbjct: 188 PFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKG--C 245

Query: 62  KSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL 121
           KSIYD  Y+WPH+ PI   ADE++++FT+SK TGH+GSRFGWA+IKDE+VY  +  Y++ 
Sbjct: 246 KSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTK 305

Query: 122 NTMGVSRECQLRAFKLLKVVL------EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFS 175
           NT G  RE QLR+ K+LK ++      +    ++  FG+  +++RW N++ ++  S+RFS
Sbjct: 306 NTEGTPRETQLRSLKVLKEIVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFS 365

Query: 176 LQEI-APQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFV 234
            QE+   +YC YF+++RPPSP+YAWV CE EEDKDCY   +  +I  + G  F A +R+V
Sbjct: 366 YQELPQSEYCNYFRRMRPPSPSYAWVNCEWEEDKDCYQTFQNGRINTQSGVGFEASSRYV 425

Query: 235 RLSLLKSQDDFDLLLHRLDELI 256
           RLSL+K+QDDFD L++ L +++
Sbjct: 426 RLSLIKTQDDFDQLMYYLKDMV 447

Able to cleave the C-S bond of sulfoxide derivatives of Cys to produce allicin, thus giving rise to all sulfur compounds which are responsible for most of the properties of garlic, such as the specific smell and flavor as well as the health benefits like blood lipid or blood pressure lowering.

Allium sativum (taxid: 4682)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

>sp|P31756|ALLN_ALLCG Alliin lyase (Fragment) OS=Allium cepa var. aggregatum PE=2 SV=1

 Score =  269 bits (688), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 123/262 (46%), Positives = 184/262 (70%), Gaps = 9/262 (3%)

Query: 2   PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYA 61
           P+YP+++EQT YF+   Y+++G A  + N S+    +E VT+PNNP+G +   V+KG   
Sbjct: 165 PYYPVFREQTKYFDKKGYEWKGNAADYVNTSTPEQFIEMVTSPNNPEGLLRHEVIKG--C 222

Query: 62  KSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL 121
           KSIYD  Y+WPH+ PI   ADE++M+FT+SK TGH+GSRFGWA+IKDE VY ++  Y++ 
Sbjct: 223 KSIYDMVYYWPHYTPIKYKADEDIMLFTMSKYTGHSGSRFGWALIKDETVYNKLLNYMTK 282

Query: 122 NTMGVSRECQLRAFKLLKVVL------EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFS 175
           NT G SRE QLR+ K+LK V       +    ++  FG+  +++RW N++ ++  S+RFS
Sbjct: 283 NTEGTSRETQLRSLKILKEVTAMIKTQKGTMRDLNTFGFQKLRERWVNITALLDKSDRFS 342

Query: 176 LQEI-APQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFV 234
            Q++   +YC YF+++RPPSP+YAWVKCE EEDKDCY   +  +I  + G+ F A +R+V
Sbjct: 343 YQKLPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQSGEGFEAGSRYV 402

Query: 235 RLSLLKSQDDFDLLLHRLDELI 256
           RLSL+K++DDFD L++ L  ++
Sbjct: 403 RLSLIKTKDDFDQLMYYLKIMV 424

Allium cepa var. aggregatum (taxid: 28911)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

>sp|P31757|ALLN_ALLCE Alliin lyase OS=Allium cepa PE=1 SV=2

 Score =  267 bits (683), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 123/262 (46%), Positives = 186/262 (70%), Gaps = 9/262 (3%)

Query: 2   PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYA 61
           P+YP+++EQT YF+   Y+++G A  + N S+    +E VT+PNNP+G +   V+KG   
Sbjct: 197 PYYPVFREQTKYFDKKGYEWKGNAADYVNTSTPEQFIEMVTSPNNPEGLLRHEVIKG--C 254

Query: 62  KSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL 121
           KSIY   Y+WPH+ PI   ADE++M+FT+SK TGH+GSRFGWA+IKDE VY ++  Y++ 
Sbjct: 255 KSIYYMVYYWPHYTPIKYKADEDIMLFTMSKYTGHSGSRFGWALIKDETVYNKLLNYMTK 314

Query: 122 NTMGVSRECQLRAFKLLKVVL-----EDGG-NNIFEFGYNTMKKRWENLSKIISLSNRFS 175
           NT G SRE QLR+ K+LK V+     ++G   ++  FG+  +++RW N++ ++  S+RFS
Sbjct: 315 NTEGTSRETQLRSLKILKEVIAMVKTQNGTMRDLNTFGFQKLRERWVNITALLDKSDRFS 374

Query: 176 LQEI-APQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFV 234
            Q++   +YC YF+++RPPSP+YAWVKCE EEDKDCY   +  +I  + G+ F A +R+V
Sbjct: 375 YQKLPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQSGEGFEAGSRYV 434

Query: 235 RLSLLKSQDDFDLLLHRLDELI 256
           RLSL+K++DDFD L++ L  ++
Sbjct: 435 RLSLIKTKDDFDQLMYYLKIMV 456

Allium cepa (taxid: 4679)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

>sp|Q9LR29|TAR1_ARATH Tryptophan aminotransferase-related protein 1 OS=Arabidopsis thaliana GN=TAR1 PE=2 SV=2

 Score =  206 bits (525), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 102/256 (39%), Positives = 155/256 (60%), Gaps = 9/256 (3%)

Query: 1   MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVL-KGP 59
           +P+Y  Y E+  Y +S  YK+EG+A  +         +E VT+PNNPDG M + V+ +  
Sbjct: 127 VPYYSTYVEEASYLQSTLYKWEGDARTFDKKGP---YIELVTSPNNPDGIMREPVVNRRE 183

Query: 60  YAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI 119
             K I+D AY+WPH+ PI    D +LM+FT SK+TGHAGSR GWA++KD  V ++M  Y+
Sbjct: 184 GGKVIHDLAYYWPHYTPITRRQDHDLMLFTFSKITGHAGSRIGWALVKDIEVAKKMVHYL 243

Query: 120 SLNTMGVSRECQLRAFKLLKVVLE---DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSL 176
           ++N++GVS+E Q RA  +L  + +       + FE+GY  MK RWE L +++   + F+L
Sbjct: 244 TINSIGVSKESQTRATTILNELTKTCRTQSESFFEYGYEKMKSRWERLREVVESGDAFTL 303

Query: 177 QEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRL 236
                 +C +F K    SPA+AW+    +E++D   +LK  K++ R G +     R+VR+
Sbjct: 304 PNYPQDFCNFFGKTLSTSPAFAWLG--YKEERDLGSLLKEKKVLTRGGDRCGCNKRYVRV 361

Query: 237 SLLKSQDDFDLLLHRL 252
           S+L   DDFD+ L RL
Sbjct: 362 SMLSRDDDFDVSLQRL 377

Probably involved in auxin production. TAA1, TAR1 and TAR2 are required for proper embryo patterning.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q9S7N2|TAA1_ARATH Tryptophan aminotransferase 1 OS=Arabidopsis thaliana GN=TAA1 PE=1 SV=1

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/259 (40%), Positives = 159/259 (61%), Gaps = 13/259 (5%)

Query: 2   PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGP-- 59
           PFY  Y E+T Y  S  YK+EG+A  WG      + +E VT+PNNPDG + + V+  P  
Sbjct: 127 PFYSTYVEETTYVRSGMYKWEGDA--WGFDKKGPY-IELVTSPNNPDGTIRETVVNRPDD 183

Query: 60  -YAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAY 118
             AK I+D AY+WPH+ PI    D ++M+FT SK+TGHAGSR GWA++KD+ V ++M  Y
Sbjct: 184 DEAKVIHDFAYYWPHYTPITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEY 243

Query: 119 ISLNTMGVSRECQLRAFKLLKVV-----LEDGGNNIFEFGYNTMKKRWENLSKIISLSNR 173
           I +N++GVS+E Q+R  K+L V+      E    N F++G   MK RWE L +++  S+ 
Sbjct: 244 IIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDA 303

Query: 174 FSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARF 233
           F+L +    +C YF K     PA+AW+    +E+ D    L+  K++ R G++  ++ + 
Sbjct: 304 FTLPKYPEAFCNYFGKSLESYPAFAWLGT--KEETDLVSELRRHKVMSRAGERCGSDKKH 361

Query: 234 VRLSLLKSQDDFDLLLHRL 252
           VR+S+L  +D F++ L RL
Sbjct: 362 VRVSMLSREDVFNVFLERL 380

L-tryptophan aminotransferase involved in auxin (IAA) biosynthesis. Can convert L-tryptophan and pyruvate to indole-3-pyruvic acid (IPA) and alanine. Catalyzes the first step in IPA branch of the auxin biosynthetic pathway. Required for auxin production to initiate multiple change in growth in response to environmental and developmental cues. It is also active with phenylalanine, tyrosine, leucine, alanine, methionine and glutamine. Both TAA1 and TAR2 are required for maintaining proper auxin levels in roots, while TAA1, TAR1 and TAR2 are required for proper embryo patterning. Involved in the maintenance of the root stem cell niches and required for shade avoidance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q94A02|TAR2_ARATH Tryptophan aminotransferase-related protein 2 OS=Arabidopsis thaliana GN=TAR2 PE=2 SV=1

 Score =  202 bits (514), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/256 (40%), Positives = 154/256 (60%), Gaps = 9/256 (3%)

Query: 2   PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYA 61
           P+Y  Y   TD  +S  Y++ G+A  +     D   +E VT+PNNPDG + ++V+     
Sbjct: 181 PYYSTYPLITDCLKSGLYRWGGDAKTY---KEDGPYIELVTSPNNPDGFLRESVVNSTEG 237

Query: 62  KSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL 121
             I+D AY+WP + PI +PAD ++M+FT SK TGHAG R GWA++KD    ++M  YI L
Sbjct: 238 ILIHDLAYYWPQYTPITSPADHDVMLFTASKSTGHAGIRIGWALVKDRETARKMIEYIEL 297

Query: 122 NTMGVSRECQLRAFKLLKVVLEDGGN----NIFEFGYNTMKKRWENLSKIISLSNRFSLQ 177
           NT+GVS++ QLR  K+LKVV +  GN    + F+  Y+ M +RW+ L +    + RFS+ 
Sbjct: 298 NTIGVSKDSQLRVAKVLKVVSDSCGNVTGKSFFDHSYDAMYERWKLLKQAAKDTKRFSVP 357

Query: 178 EIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILK-AAKIIGREGKKFRAEARFVRL 236
           +   Q C +F ++  P PA+AW KCE E   DC   L+   KI+ + GK F  E   VR+
Sbjct: 358 DFVSQRCNFFGRVFEPQPAFAWFKCE-EGIVDCEKFLREEKKILTKSGKYFGDELSNVRI 416

Query: 237 SLLKSQDDFDLLLHRL 252
           S+L    +F++ LHR+
Sbjct: 417 SMLDRDTNFNIFLHRI 432

Involved in auxin production. Both TAA1 and TAR2 are required for maintaining proper auxin levels in roots, while TAA1, TAR1 and TAR2 are required for proper embryo patterning. Involved in the maintenance of the root stem cell niches.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q58365|HIS8_METJA Histidinol-phosphate aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=hisC PE=3 SV=1

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 22/163 (13%)

Query: 13  YFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQM-----NKAVLKGPYAKSIYDH 67
           Y +  D+K   E+ L  N  +D   V F+  PNNP G +      + V+    A  + DH
Sbjct: 144 YDKEKDFKLNVESVL--NNITDKTKVIFLCTPNNPTGNIIENRDVERVINETDALVVIDH 201

Query: 68  AYF--------WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI 119
           AY         W   AP     D  +++ T SK+ G AG R G+ V   + +   M    
Sbjct: 202 AYIEYAKKEYDWTQKAP---EYDNVIVLRTFSKVFGLAGMRVGYGVANKKIIDYMMRVKP 258

Query: 120 SLNTMGVSRECQLRAFK---LLKVVLEDGGNNIFEFGYNTMKK 159
             +   +S+ C + A +     +  + DG  +  E  YN +KK
Sbjct: 259 IFSLTRLSQVCAITALRDREFFERCVRDGIKS-REMLYNGLKK 300

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
296083130	432	unnamed protein product [Vitis vinifera]	0.996	0.597	0.667	1e-107
225470828	454	PREDICTED: tryptophan aminotransferase-r	0.996	0.568	0.667	1e-106
225470826	488	PREDICTED: tryptophan aminotransferase-r	0.996	0.528	0.667	1e-106
225470834	458	PREDICTED: tryptophan aminotransferase-r	1.0	0.565	0.662	1e-106
296083129	473	unnamed protein product [Vitis vinifera]	0.996	0.545	0.667	1e-106
255566734	467	Alliin lyase precursor, putative [Ricinu	1.0	0.554	0.646	1e-105
255566736	1176	nucleotide binding protein, putative [Ri	1.0	0.220	0.65	1e-105
255566732	440	Alliin lyase precursor, putative [Ricinu	0.996	0.586	0.653	1e-105
225470836	465	PREDICTED: tryptophan aminotransferase-r	1.0	0.556	0.657	1e-103
296083136	458	unnamed protein product [Vitis vinifera]	1.0	0.565	0.657	1e-103

>gi|296083130|emb|CBI22766.3| unnamed protein product [Vitis vinifera]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 173/259 (66%), Positives = 219/259 (84%), Gaps = 1/259 (0%)

Query: 2   PFYPLYQEQTDYFESVDYKFEGEANLW-GNASSDTHLVEFVTAPNNPDGQMNKAVLKGPY 60
           PFYP+YQ QTD+F S D++F+G+A LW  N+ S ++L+EFVTAPNNPDGQ+NKAVL GPY
Sbjct: 165 PFYPVYQLQTDFFRSKDFQFQGDAYLWENNSDSTSNLIEFVTAPNNPDGQLNKAVLHGPY 224

Query: 61  AKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS 120
            K+I+DHAY+WPHF  IPAPADE++M+FT+SKLTGHAG+RFGWA+IKDEAVYQRMS Y+ 
Sbjct: 225 VKAIHDHAYYWPHFTGIPAPADEDVMVFTLSKLTGHAGTRFGWALIKDEAVYQRMSTYVK 284

Query: 121 LNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIA 180
           LN +G+SR+ QLRA+KLLKVV+E  G  IFEFG+ TMK RWE LS  +S+S RFSLQ+IA
Sbjct: 285 LNCLGISRDAQLRAYKLLKVVMEGSGREIFEFGHATMKNRWEKLSSALSVSKRFSLQDIA 344

Query: 181 PQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK 240
           PQYCT+F+ +R  SPAYAW++CEREEDKDCY  LK A IIGREG  F   + +VRLSL+K
Sbjct: 345 PQYCTFFQTVRAASPAYAWLRCEREEDKDCYRALKKAGIIGREGTLFGTASSYVRLSLIK 404

Query: 241 SQDDFDLLLHRLDELISKE 259
           +QDDFD+LLH++ +L+++E
Sbjct: 405 TQDDFDMLLHQIKKLVAEE 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470828|ref|XP_002265873.1| PREDICTED: tryptophan aminotransferase-related protein 4-like [Vitis vinifera]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 173/259 (66%), Positives = 219/259 (84%), Gaps = 1/259 (0%)

Query: 2   PFYPLYQEQTDYFESVDYKFEGEANLW-GNASSDTHLVEFVTAPNNPDGQMNKAVLKGPY 60
           PFYP+YQ QTD+F S D++F+G+A LW  N+ S ++L+EFVTAPNNPDGQ+NKAVL GPY
Sbjct: 187 PFYPVYQLQTDFFRSKDFQFQGDAYLWENNSDSTSNLIEFVTAPNNPDGQLNKAVLHGPY 246

Query: 61  AKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS 120
            K+I+DHAY+WPHF  IPAPADE++M+FT+SKLTGHAG+RFGWA+IKDEAVYQRMS Y+ 
Sbjct: 247 VKAIHDHAYYWPHFTGIPAPADEDVMVFTLSKLTGHAGTRFGWALIKDEAVYQRMSTYVK 306

Query: 121 LNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIA 180
           LN +G+SR+ QLRA+KLLKVV+E  G  IFEFG+ TMK RWE LS  +S+S RFSLQ+IA
Sbjct: 307 LNCLGISRDAQLRAYKLLKVVMEGSGREIFEFGHATMKNRWEKLSSALSVSKRFSLQDIA 366

Query: 181 PQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK 240
           PQYCT+F+ +R  SPAYAW++CEREEDKDCY  LK A IIGREG  F   + +VRLSL+K
Sbjct: 367 PQYCTFFQTVRAASPAYAWLRCEREEDKDCYRALKKAGIIGREGTLFGTASSYVRLSLIK 426

Query: 241 SQDDFDLLLHRLDELISKE 259
           +QDDFD+LLH++ +L+++E
Sbjct: 427 TQDDFDMLLHQIKKLVAEE 445

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470826|ref|XP_002265827.1| PREDICTED: tryptophan aminotransferase-related protein 4-like [Vitis vinifera]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 173/259 (66%), Positives = 216/259 (83%), Gaps = 1/259 (0%)

Query: 2   PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDT-HLVEFVTAPNNPDGQMNKAVLKGPY 60
           PFY +YQ QTD+F SV+++F+G+A+LW N S  T + +EFVT+PNNPDGQ+ KAVL+GP+
Sbjct: 192 PFYTVYQLQTDFFRSVNFQFQGDASLWKNKSDSTLNFIEFVTSPNNPDGQLKKAVLQGPH 251

Query: 61  AKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS 120
            K+I+DHAY+WPHF  IPAPADE+LMIFT+SKLTGHAG+R GWA+IKDEA+YQRMS Y+ 
Sbjct: 252 VKTIHDHAYYWPHFTAIPAPADEDLMIFTLSKLTGHAGTRLGWALIKDEALYQRMSTYVK 311

Query: 121 LNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIA 180
           +N +GVS++ QLRA KLLKV LE  G  IFEFGY  MK+RWE LS  +S S RFS+QEIA
Sbjct: 312 MNILGVSKDTQLRALKLLKVALEGSGKEIFEFGYTAMKERWERLSNALSESKRFSIQEIA 371

Query: 181 PQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK 240
           PQYCT+FK +R PSPAYAW KCEREEDK+CY +LK A IIGREG  + AE  +VRLSLLK
Sbjct: 372 PQYCTFFKTVRGPSPAYAWFKCEREEDKECYTVLKEAGIIGREGNLYGAETSYVRLSLLK 431

Query: 241 SQDDFDLLLHRLDELISKE 259
           SQDDFD LLH++++L+++E
Sbjct: 432 SQDDFDALLHQINKLVAQE 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470834|ref|XP_002266053.1| PREDICTED: tryptophan aminotransferase-related protein 4 [Vitis vinifera] gi|296083134|emb|CBI22770.3| unnamed protein product [Vitis vinifera]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 173/261 (66%), Positives = 222/261 (85%), Gaps = 2/261 (0%)

Query: 1   MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSD--THLVEFVTAPNNPDGQMNKAVLKG 58
           +PFYP+Y+ QTD+F SVD++F G+ +LW N++SD  ++ +EFVTAPNNPDG++NKAVL+G
Sbjct: 191 IPFYPVYKSQTDFFRSVDFQFAGDTSLWKNSTSDPTSNFIEFVTAPNNPDGKLNKAVLQG 250

Query: 59  PYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAY 118
           P  K IYDHAY+WPHF PIPAPADE+LMIFTISKLTGHAGSRFGWA+IKD+ VY+ M  Y
Sbjct: 251 PNVKPIYDHAYYWPHFTPIPAPADEDLMIFTISKLTGHAGSRFGWALIKDKDVYETMLDY 310

Query: 119 ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQE 178
           +SLNT+GVSR+ QLRAFKLLKVV +  G  IF+FGY TMK RWE L+K + +S RFS+QE
Sbjct: 311 MSLNTLGVSRDTQLRAFKLLKVVTQGRGREIFKFGYKTMKDRWEKLNKALLMSRRFSVQE 370

Query: 179 IAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSL 238
            +PQYCT+F K++ PSPAYAW+KCE+EEDK+CYG+LK A IIGR G  F A + +VRLSL
Sbjct: 371 NSPQYCTFFGKVKRPSPAYAWLKCEKEEDKECYGVLKKAGIIGRNGTLFGANSSYVRLSL 430

Query: 239 LKSQDDFDLLLHRLDELISKE 259
           +K+QDDFD+LLH++++L+S+E
Sbjct: 431 IKTQDDFDILLHQINKLVSEE 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083129|emb|CBI22765.3| unnamed protein product [Vitis vinifera]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 173/259 (66%), Positives = 216/259 (83%), Gaps = 1/259 (0%)

Query: 2   PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDT-HLVEFVTAPNNPDGQMNKAVLKGPY 60
           PFY +YQ QTD+F SV+++F+G+A+LW N S  T + +EFVT+PNNPDGQ+ KAVL+GP+
Sbjct: 208 PFYTVYQLQTDFFRSVNFQFQGDASLWKNKSDSTLNFIEFVTSPNNPDGQLKKAVLQGPH 267

Query: 61  AKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS 120
            K+I+DHAY+WPHF  IPAPADE+LMIFT+SKLTGHAG+R GWA+IKDEA+YQRMS Y+ 
Sbjct: 268 VKTIHDHAYYWPHFTAIPAPADEDLMIFTLSKLTGHAGTRLGWALIKDEALYQRMSTYVK 327

Query: 121 LNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIA 180
           +N +GVS++ QLRA KLLKV LE  G  IFEFGY  MK+RWE LS  +S S RFS+QEIA
Sbjct: 328 MNILGVSKDTQLRALKLLKVALEGSGKEIFEFGYTAMKERWERLSNALSESKRFSIQEIA 387

Query: 181 PQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK 240
           PQYCT+FK +R PSPAYAW KCEREEDK+CY +LK A IIGREG  + AE  +VRLSLLK
Sbjct: 388 PQYCTFFKTVRGPSPAYAWFKCEREEDKECYTVLKEAGIIGREGNLYGAETSYVRLSLLK 447

Query: 241 SQDDFDLLLHRLDELISKE 259
           SQDDFD LLH++++L+++E
Sbjct: 448 SQDDFDALLHQINKLVAQE 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566734|ref|XP_002524351.1| Alliin lyase precursor, putative [Ricinus communis] gi|223536442|gb|EEF38091.1| Alliin lyase precursor, putative [Ricinus communis]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 168/260 (64%), Positives = 217/260 (83%), Gaps = 1/260 (0%)

Query: 1   MPFYPLYQEQTDYFESVDYKFEGEANLW-GNASSDTHLVEFVTAPNNPDGQMNKAVLKGP 59
           +PFYP+Y++QTD F+SV+++F+G+A+LW  N+ + T ++EFVT+PNNPDGQ+N+AVL+G 
Sbjct: 202 IPFYPVYKQQTDLFQSVNFRFQGDASLWRNNSDTSTEMIEFVTSPNNPDGQLNEAVLEGS 261

Query: 60  YAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI 119
             +++YDHAYFWPH+  IPAPAD ++M+FT+SKLTGHAGSRFGWAVIKDE +YQRM  Y+
Sbjct: 262 NVRAVYDHAYFWPHYTAIPAPADGDIMLFTLSKLTGHAGSRFGWAVIKDEVIYQRMLTYL 321

Query: 120 SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEI 179
            LNT+GVSRECQLRA KLLKVVL+ GGN IFEFG+ TM+KRWE LSK +S+S RFS+Q+I
Sbjct: 322 ELNTLGVSRECQLRALKLLKVVLQGGGNAIFEFGHETMRKRWERLSKTVSISKRFSIQKI 381

Query: 180 APQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL 239
            PQYC YFKK+R  SPAY W+KCEREEDKDCY +L+   IIG  G  F     +VR+SLL
Sbjct: 382 PPQYCVYFKKVREASPAYGWLKCEREEDKDCYAVLQGGNIIGNPGNLFNVGDGYVRISLL 441

Query: 240 KSQDDFDLLLHRLDELISKE 259
           K QDDFDLL+ +L++L+S+E
Sbjct: 442 KRQDDFDLLIEKLNQLVSEE 461

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566736|ref|XP_002524352.1| nucleotide binding protein, putative [Ricinus communis] gi|223536443|gb|EEF38092.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 169/260 (65%), Positives = 214/260 (82%), Gaps = 1/260 (0%)

Query: 1    MPFYPLYQEQTDYFESVDYKFEGEANLW-GNASSDTHLVEFVTAPNNPDGQMNKAVLKGP 59
            +PFYP+Y+ QTD F+SV+++F+G+A+LW  N+ + T ++EFVT+PNNPDGQ+ KAVL+G 
Sbjct: 910  IPFYPVYKLQTDLFQSVNFRFQGDASLWRNNSDTSTEMIEFVTSPNNPDGQLKKAVLEGS 969

Query: 60   YAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI 119
              ++IYDHAYFWPHF  IPAPAD ++M+FT+SKLTGHAGSRFGWAVIKDE +YQRM  Y+
Sbjct: 970  NVRAIYDHAYFWPHFTAIPAPADGDMMLFTLSKLTGHAGSRFGWAVIKDEIIYQRMLTYL 1029

Query: 120  SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEI 179
            + NTMGVSRE QLRA KLLKVVL+ GGN IFEFGY TM+KRWE LS  IS+S RFSLQ+I
Sbjct: 1030 TFNTMGVSRESQLRALKLLKVVLQGGGNAIFEFGYETMRKRWERLSNTISMSKRFSLQKI 1089

Query: 180  APQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL 239
            +PQYC +F+ +R  SPAY WVKCER+EDKDC+ +L+A  I  R G  F    ++VRLSL+
Sbjct: 1090 SPQYCNFFQGLREASPAYGWVKCERQEDKDCFAVLQAGNITSRRGSLFGVGDQYVRLSLI 1149

Query: 240  KSQDDFDLLLHRLDELISKE 259
            + QDDFDLL+HRL +L+SKE
Sbjct: 1150 RRQDDFDLLIHRLTQLVSKE 1169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566732|ref|XP_002524350.1| Alliin lyase precursor, putative [Ricinus communis] gi|223536441|gb|EEF38090.1| Alliin lyase precursor, putative [Ricinus communis]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 170/260 (65%), Positives = 215/260 (82%), Gaps = 2/260 (0%)

Query: 1   MPFYPLYQEQTDYFESVDYKFEGEANLW-GNASSDTHLVEFVTAPNNPDGQMNKAVLKGP 59
           +PFYP+Y++QTD F S++++F+G+ +LW  N  ++  ++EFVT+PNNPDGQ+NKAVL+G 
Sbjct: 176 IPFYPVYKQQTDLFHSLNFRFQGDTSLWRNNTDTNAEMIEFVTSPNNPDGQLNKAVLEGS 235

Query: 60  YAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI 119
             ++IYDHAYFWPHF  IPAPAD ++M+FT+SKLTGHAGSRFGWAVIKDE +YQRM  Y+
Sbjct: 236 NVRAIYDHAYFWPHFTAIPAPADGDMMLFTLSKLTGHAGSRFGWAVIKDEVIYQRMQTYL 295

Query: 120 SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEI 179
            LNT+GVSRECQLRA KLLKVVL+ GGN IFEFG  TM+KRWE LSK +S+S RFS+Q+I
Sbjct: 296 KLNTLGVSRECQLRALKLLKVVLQ-GGNAIFEFGQETMRKRWERLSKTVSMSKRFSIQKI 354

Query: 180 APQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL 239
            PQYC YFKK+R  SPAY W+KCEREEDKDCY +L+   IIGR G  F  E  +VR+SLL
Sbjct: 355 PPQYCIYFKKVREASPAYGWLKCEREEDKDCYAVLQGGNIIGRPGNLFNVEDGYVRISLL 414

Query: 240 KSQDDFDLLLHRLDELISKE 259
           K QDDFDLL+ +L++L+S+E
Sbjct: 415 KRQDDFDLLIDKLNQLVSEE 434

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470836|ref|XP_002266138.1| PREDICTED: tryptophan aminotransferase-related protein 4 [Vitis vinifera]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 171/260 (65%), Positives = 215/260 (82%), Gaps = 1/260 (0%)

Query: 1   MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDT-HLVEFVTAPNNPDGQMNKAVLKGP 59
           +PFYP+Y+ QTD+F SVD++F G+ +LW N S  T +L+EFVTAPNNPDG++NKAVL+GP
Sbjct: 191 IPFYPVYKSQTDFFRSVDFQFVGDTSLWKNTSDTTSNLIEFVTAPNNPDGKLNKAVLQGP 250

Query: 60  YAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI 119
            AK IYDHAY+WPHF PIPAPADE+LMIFT SKLTGHAGSRFGWA+IKD+ VY+ MS Y+
Sbjct: 251 NAKPIYDHAYYWPHFTPIPAPADEDLMIFTFSKLTGHAGSRFGWALIKDKDVYETMSNYM 310

Query: 120 SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEI 179
           SLN  GVSR+ QLRAFKLLKVV    G  IFEFGY TMK RWE L++ + +S RFS+QE 
Sbjct: 311 SLNVDGVSRDTQLRAFKLLKVVTRGRGREIFEFGYKTMKDRWEKLNRALLMSRRFSVQES 370

Query: 180 APQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL 239
           +PQYCT+  K++ PSPAYAW+KCE+EEDK+CY +LK A IIGR G  F A + +VRLSL+
Sbjct: 371 SPQYCTFSGKVKRPSPAYAWLKCEKEEDKECYRVLKKAGIIGRNGTLFSANSSYVRLSLI 430

Query: 240 KSQDDFDLLLHRLDELISKE 259
           K+QDDFD+LLH++++L+ +E
Sbjct: 431 KTQDDFDILLHQINKLVGEE 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083136|emb|CBI22772.3| unnamed protein product [Vitis vinifera]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 171/260 (65%), Positives = 215/260 (82%), Gaps = 1/260 (0%)

Query: 1   MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDT-HLVEFVTAPNNPDGQMNKAVLKGP 59
           +PFYP+Y+ QTD+F SVD++F G+ +LW N S  T +L+EFVTAPNNPDG++NKAVL+GP
Sbjct: 184 IPFYPVYKSQTDFFRSVDFQFVGDTSLWKNTSDTTSNLIEFVTAPNNPDGKLNKAVLQGP 243

Query: 60  YAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI 119
            AK IYDHAY+WPHF PIPAPADE+LMIFT SKLTGHAGSRFGWA+IKD+ VY+ MS Y+
Sbjct: 244 NAKPIYDHAYYWPHFTPIPAPADEDLMIFTFSKLTGHAGSRFGWALIKDKDVYETMSNYM 303

Query: 120 SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEI 179
           SLN  GVSR+ QLRAFKLLKVV    G  IFEFGY TMK RWE L++ + +S RFS+QE 
Sbjct: 304 SLNVDGVSRDTQLRAFKLLKVVTRGRGREIFEFGYKTMKDRWEKLNRALLMSRRFSVQES 363

Query: 180 APQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL 239
           +PQYCT+  K++ PSPAYAW+KCE+EEDK+CY +LK A IIGR G  F A + +VRLSL+
Sbjct: 364 SPQYCTFSGKVKRPSPAYAWLKCEKEEDKECYRVLKKAGIIGRNGTLFSANSSYVRLSLI 423

Query: 240 KSQDDFDLLLHRLDELISKE 259
           K+QDDFD+LLH++++L+ +E
Sbjct: 424 KTQDDFDILLHQINKLVGEE 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
TAIR|locus:2009056	457	AT1G34040 [Arabidopsis thalian	1.0	0.566	0.583	3.3e-86
TAIR|locus:2009031	463	AT1G34060 [Arabidopsis thalian	1.0	0.559	0.564	1.7e-84
TAIR|locus:2026826	391	TAA1 "tryptophan aminotransfer	0.949	0.629	0.405	1.1e-50
TAIR|locus:2028010	388	TAR1 "tryptophan aminotransfer	0.953	0.636	0.398	1.7e-50
TAIR|locus:2121999	440	TAR2 "tryptophan aminotransfer	0.953	0.561	0.406	2e-49

TAIR|locus:2009056 AT1G34040 [Arabidopsis thaliana (taxid:3702)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 153/262 (58%), Positives = 205/262 (78%)

Query:     1 MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHL---VEFVTAPNNPDGQMNKAVLK 57
             +P+Y LY++Q D+F S + KFEG+A+ W  +  +  +   +E VT+PNNPDG++ +AVL 
Sbjct:   189 VPYYNLYKQQADFFNSTNLKFEGDASAWKRSERNDDIKQVIEIVTSPNNPDGKLKRAVLD 248

Query:    58 GPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSA 117
             GP  K I+D+AY+WP+F+PI   ADE+L +F++SK TGHAGSRFGWA++K++ VY++M  
Sbjct:   249 GPNVKYIHDYAYYWPYFSPITRQADEDLSLFSLSKTTGHAGSRFGWALVKEKTVYEKMKI 308

Query:   118 YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQ 177
             YISL++MGVSR+ QLRA +LLKVV+ DGGN IF FGY T+KKRWE L+KI S+S RFSL+
Sbjct:   309 YISLSSMGVSRDTQLRALQLLKVVIGDGGNEIFRFGYGTLKKRWEILNKIFSMSTRFSLE 368

Query:   178 EIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLS 237
              I P+YC YFKK+R  +P+YAWVKCER ED DCY I KAAKI GR G+ F ++ RFVRLS
Sbjct:   369 TIKPEYCNYFKKVREFTPSYAWVKCERPEDTDCYEIFKAAKITGRNGEMFGSDERFVRLS 428

Query:   238 LLKSQDDFDLLLHRLDELISKE 259
             L++SQDDFD L+  L + +SKE
Sbjct:   429 LIRSQDDFDQLIAMLKKFVSKE 450

GO:0003824 "catalytic activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA;ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

TAIR|locus:2009031 AT1G34060 [Arabidopsis thaliana (taxid:3702)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 148/262 (56%), Positives = 200/262 (76%)

Query:     1 MPFYPLYQEQTDYFESVDYKFEGEANLW---GNASSDTHLVEFVTAPNNPDGQMNKAVLK 57
             +P+Y +Y++Q ++F+S   KFEG A+ W   G   + T ++E VT+PNNPDG++ +AVL 
Sbjct:   191 IPYYAMYKDQAEFFDSAHLKFEGNASAWKQSGRNDNITQVIEVVTSPNNPDGKLKRAVLD 250

Query:    58 GPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSA 117
             GP  K+++D+AY+WPHF+PI  P DE+L +F++SK TGHAGSRFGW ++KD+A+Y++M  
Sbjct:   251 GPNVKTLHDYAYYWPHFSPITHPVDEDLSLFSLSKTTGHAGSRFGWGLVKDKAIYEKMDR 310

Query:   118 YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQ 177
             +I L +MGVS+E QL   +LLKVV+ DGGN IF FGY T+KKRWE L+KI S+S RFSLQ
Sbjct:   311 FIRLTSMGVSKETQLHVLQLLKVVVGDGGNEIFSFGYGTVKKRWETLNKIFSMSTRFSLQ 370

Query:   178 EIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLS 237
              I P+YC YFKK+R  +P+YAWVKCER ED +CY I +AAKI GR G  F +E RFVRLS
Sbjct:   371 TIKPEYCNYFKKVREFTPSYAWVKCERPEDTNCYEIFRAAKITGRNGNVFGSEERFVRLS 430

Query:   238 LLKSQDDFDLLLHRLDELISKE 259
             L++SQDDFD L+  L +L+  E
Sbjct:   431 LIRSQDDFDQLIAMLKKLVYHE 452

GO:0003824 "catalytic activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA;ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

TAIR|locus:2026826 TAA1 "tryptophan aminotransferase of Arabidopsis 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 105/259 (40%), Positives = 159/259 (61%)

Query:     2 PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGP-- 59
             PFY  Y E+T Y  S  YK+EG+A  WG      + +E VT+PNNPDG + + V+  P  
Sbjct:   127 PFYSTYVEETTYVRSGMYKWEGDA--WGFDKKGPY-IELVTSPNNPDGTIRETVVNRPDD 183

Query:    60 -YAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAY 118
               AK I+D AY+WPH+ PI    D ++M+FT SK+TGHAGSR GWA++KD+ V ++M  Y
Sbjct:   184 DEAKVIHDFAYYWPHYTPITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEY 243

Query:   119 ISLNTMGVSRECQLRAFKLLKVVLE-----DGGNNIFEFGYNTMKKRWENLSKIISLSNR 173
             I +N++GVS+E Q+R  K+L V+ E         N F++G   MK RWE L +++  S+ 
Sbjct:   244 IIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDA 303

Query:   174 FSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARF 233
             F+L +    +C YF K     PA+AW+  +  E+ D    L+  K++ R G++  ++ + 
Sbjct:   304 FTLPKYPEAFCNYFGKSLESYPAFAWLGTK--EETDLVSELRRHKVMSRAGERCGSDKKH 361

Query:   234 VRLSLLKSQDDFDLLLHRL 252
             VR+S+L  +D F++ L RL
Sbjct:   362 VRVSMLSREDVFNVFLERL 380

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA;ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA;IDA

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0004838 "L-tyrosine:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009641 "shade avoidance" evidence=IMP

GO:0009684 "indoleacetic acid biosynthetic process" evidence=IMP

GO:0047312 "L-phenylalanine:pyruvate aminotransferase activity" evidence=IDA

GO:0048366 "leaf development" evidence=IMP

GO:0050048 "L-leucine:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0050362 "L-tryptophan:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0080097 "L-tryptophan:pyruvate aminotransferase activity" evidence=IDA

GO:0080098 "L-tyrosine:pyruvate aminotransferase activity" evidence=IDA

GO:0080099 "L-methionine:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0080100 "L-glutamine:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0080130 "L-phenylalanine:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0009908 "flower development" evidence=IGI

GO:0009958 "positive gravitropism" evidence=IMP

GO:0010078 "maintenance of root meristem identity" evidence=IGI

GO:0010087 "phloem or xylem histogenesis" evidence=IGI

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IGI

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IGI

GO:0048467 "gynoecium development" evidence=IGI

GO:0048825 "cotyledon development" evidence=IGI

GO:0080022 "primary root development" evidence=IGI

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0016126 "sterol biosynthetic process" evidence=RCA

TAIR|locus:2028010 TAR1 "tryptophan aminotransferase related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 102/256 (39%), Positives = 155/256 (60%)

Query:     1 MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVL-KGP 59
             +P+Y  Y E+  Y +S  YK+EG+A  +         +E VT+PNNPDG M + V+ +  
Sbjct:   127 VPYYSTYVEEASYLQSTLYKWEGDARTFDKKGP---YIELVTSPNNPDGIMREPVVNRRE 183

Query:    60 YAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI 119
               K I+D AY+WPH+ PI    D +LM+FT SK+TGHAGSR GWA++KD  V ++M  Y+
Sbjct:   184 GGKVIHDLAYYWPHYTPITRRQDHDLMLFTFSKITGHAGSRIGWALVKDIEVAKKMVHYL 243

Query:   120 SLNTMGVSRECQLRAFKLLKVVLED---GGNNIFEFGYNTMKKRWENLSKIISLSNRFSL 176
             ++N++GVS+E Q RA  +L  + +       + FE+GY  MK RWE L +++   + F+L
Sbjct:   244 TINSIGVSKESQTRATTILNELTKTCRTQSESFFEYGYEKMKSRWERLREVVESGDAFTL 303

Query:   177 QEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRL 236
                   +C +F K    SPA+AW+  +  E++D   +LK  K++ R G +     R+VR+
Sbjct:   304 PNYPQDFCNFFGKTLSTSPAFAWLGYK--EERDLGSLLKEKKVLTRGGDRCGCNKRYVRV 361

Query:   237 SLLKSQDDFDLLLHRL 252
             S+L   DDFD+ L RL
Sbjct:   362 SMLSRDDDFDVSLQRL 377

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA;ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IGI

GO:0048825 "cotyledon development" evidence=IGI

GO:0050362 "L-tryptophan:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0080022 "primary root development" evidence=IGI

GO:0080097 "L-tryptophan:pyruvate aminotransferase activity" evidence=ISS

TAIR|locus:2121999 TAR2 "tryptophan aminotransferase related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 104/256 (40%), Positives = 154/256 (60%)

Query:     2 PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYA 61
             P+Y  Y   TD  +S  Y++ G+A  +     D   +E VT+PNNPDG + ++V+     
Sbjct:   181 PYYSTYPLITDCLKSGLYRWGGDAKTY---KEDGPYIELVTSPNNPDGFLRESVVNSTEG 237

Query:    62 KSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL 121
               I+D AY+WP + PI +PAD ++M+FT SK TGHAG R GWA++KD    ++M  YI L
Sbjct:   238 ILIHDLAYYWPQYTPITSPADHDVMLFTASKSTGHAGIRIGWALVKDRETARKMIEYIEL 297

Query:   122 NTMGVSRECQLRAFKLLKVVLEDGGN----NIFEFGYNTMKKRWENLSKIISLSNRFSLQ 177
             NT+GVS++ QLR  K+LKVV +  GN    + F+  Y+ M +RW+ L +    + RFS+ 
Sbjct:   298 NTIGVSKDSQLRVAKVLKVVSDSCGNVTGKSFFDHSYDAMYERWKLLKQAAKDTKRFSVP 357

Query:   178 EIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAK-IIGREGKKFRAEARFVRL 236
             +   Q C +F ++  P PA+AW KCE E   DC   L+  K I+ + GK F  E   VR+
Sbjct:   358 DFVSQRCNFFGRVFEPQPAFAWFKCE-EGIVDCEKFLREEKKILTKSGKYFGDELSNVRI 416

Query:   237 SLLKSQDDFDLLLHRL 252
             S+L    +F++ LHR+
Sbjct:   417 SMLDRDTNFNIFLHRI 432


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      259       259   0.00088  114 3  11 22  0.45    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  217 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.59u 0.07s 21.66t   Elapsed:  00:00:03
  Total cpu time:  21.60u 0.07s 21.67t   Elapsed:  00:00:03
  Start:  Sat May 11 11:10:23 2013   End:  Sat May 11 11:10:26 2013

GO:0003824 "catalytic activity" evidence=IEA

GO:0016846 "carbon-sulfur lyase activity" evidence=IEA;ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=IGI

GO:0009723 "response to ethylene stimulus" evidence=IGI

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0009908 "flower development" evidence=IGI

GO:0009958 "positive gravitropism" evidence=IGI

GO:0010078 "maintenance of root meristem identity" evidence=IGI

GO:0010087 "phloem or xylem histogenesis" evidence=IGI

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IGI

GO:0048367 "shoot system development" evidence=IGI

GO:0048467 "gynoecium development" evidence=IGI

GO:0048825 "cotyledon development" evidence=IGI

GO:0050362 "L-tryptophan:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0080022 "primary root development" evidence=IGI

GO:0080097 "L-tryptophan:pyruvate aminotransferase activity" evidence=ISS

GO:0042742 "defense response to bacterium" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
pfam04864	362	pfam04864, Alliinase_C, Allinase	1e-137
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	2e-18
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	6e-09
COG0079	356	COG0079, HisC, Histidinol-phosphate/aromatic amino	0.001

>gnl|CDD|218297 pfam04864, Alliinase_C, Allinase

 Score =  389 bits (1002), Expect = e-137
 Identities = 140/261 (53%), Positives = 193/261 (73%), Gaps = 8/261 (3%)

Query: 2   PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYA 61
           P+Y +Y+EQT YF+S  YK+EG A  + N  +    +E VT+PNNPDG + +AV+ G   
Sbjct: 104 PYYSVYKEQTSYFDSKGYKWEGNAAAYVNTDNPGPFIELVTSPNNPDGTLREAVIDGS-- 161

Query: 62  KSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL 121
           K+I+D AY+WPH+ PI  PADE++M+FT+SK TGHAGSRFGWA++KDE V ++M  YI+ 
Sbjct: 162 KAIHDLAYYWPHYTPITYPADEDIMLFTMSKYTGHAGSRFGWALVKDEEVAKKMVEYITK 221

Query: 122 NTMGVSRECQLRAFKLLKVVLEDGGN------NIFEFGYNTMKKRWENLSKIISLSNRFS 175
           NT+GVS+E QLR  K+LKVVL           + F+FGY  M++RWE L +++S S+RFS
Sbjct: 222 NTIGVSKESQLRTLKILKVVLATCKTESGTMGDFFDFGYEKMRERWEKLRELVSQSDRFS 281

Query: 176 LQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVR 235
           LQ++  +YC YF +IR PSPAYAW+KCE EED DCY +L+  KI+ R G++F A++R+VR
Sbjct: 282 LQKLPSEYCNYFGRIREPSPAYAWLKCEWEEDTDCYEVLRNGKILTRSGERFGADSRYVR 341

Query: 236 LSLLKSQDDFDLLLHRLDELI 256
           LSL+K+QDDFD LL RL  ++
Sbjct: 342 LSLIKTQDDFDQLLERLKSMV 362

Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulfoxide cysteine derivatives by alliinase (EC:4.4.1.4), whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system. Length = 362

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score = 83.2 bits (206), Expect = 2e-18
 Identities = 64/279 (22%), Positives = 104/279 (37%), Gaps = 45/279 (16%)

Query: 2   PFYPLYQEQTDY----FESVDYKFEGEANLWGNA-----SSDTHLVEFVTAPNNPDGQ-M 51
           P YP Y+            V    EG   L         +  T L+ ++  PNNP G  +
Sbjct: 91  PTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLL-YLNNPNNPTGAVL 149

Query: 52  NKAVLKGP--YAKS-----IYDHAYFWPHFAPIPAPADEE-------LMIFTISKLTGHA 97
           ++  L+     AK      I D AY    +   P PA          +++ + SK  G  
Sbjct: 150 SEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLP 209

Query: 98  GSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTM 157
           G R G+ +   E + +R+   +   T G S   Q  A   L     D G    E      
Sbjct: 210 GLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAAL-----DDGEEHLEELRERY 264

Query: 158 KKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKD-CYGILKA 216
           ++R + L +         L+E+ P        ++P    + W+     +D++    +L  
Sbjct: 265 RRRRDALLEA--------LKELGP-----LVVVKPSGGFFLWLDLPEGDDEEFLERLLLE 311

Query: 217 AKIIGREGKKFRAEA-RFVRLSLLKSQDDFDLLLHRLDE 254
           A ++ R G  F      FVRLS    +++ +  L RL E
Sbjct: 312 AGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLAE 350

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 62/290 (21%), Positives = 98/290 (33%), Gaps = 50/290 (17%)

Query: 1   MPFYPLYQEQTDYF--ESVDYKFEGEANLW--------GNASSDTHLVEFVTAPNNPDGQ 50
            P YP Y+        + V    + E N +           +  T  +  + +PNNP G 
Sbjct: 120 DPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAI-ILNSPNNPTGA 178

Query: 51  -MNKAVLKG----------------PYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKL 93
             +K  LK                  Y + +YD A   P    +    D  + I + SK 
Sbjct: 179 VYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEH-PSILELAGARDRTITINSFSKT 237

Query: 94  TGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFG 153
            G  G R GW V   E +   +    S  T       Q  A   L        + + E  
Sbjct: 238 YGMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALN---GPQSDEVVEEM 294

Query: 154 YNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPA-YAWVKCEREED--KDC 210
               ++R + L +         L EI          ++PP  A Y + K     D  +  
Sbjct: 295 REEYRERRDLLVEA--------LNEIG-----GLSVVKPPEGAFYLFPKIPELLDSEEFA 341

Query: 211 YGILKAAKIIGREGKKF--RAEARFVRLSLLKSQDDFDLLLHRLDELISK 258
             +L+ A +    G  F       +VRLSL  S++  +  L RL   +++
Sbjct: 342 KKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARFLAE 391

Length = 393

>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 44/242 (18%), Positives = 87/242 (35%), Gaps = 47/242 (19%)

Query: 34  DTHLVEFVTAPNNPDGQ-MNKAVLK------GPYAKSIYDHAYFWPHFAPIPAPADEE-- 84
            T LV F+  PNNP G  + +  L+            + D AY    F+P  +    +  
Sbjct: 145 KTKLV-FLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYI--EFSPESSLELLKYP 201

Query: 85  ---LMIFTISKLTGHAGSRFGWAVIKDE--AVYQRMSAYISLNTMGVSRECQLRAFKLLK 139
              +++ T SK  G AG R G+A+   E  A   ++    ++++  +             
Sbjct: 202 PNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRPPFNVSSPAL---------AAAI 252

Query: 140 VVLEDGGNNIFEFGYNTMKKRWENLSKIIS-LSNRFSLQEIAPQYCTYFKKIRPPSPA-Y 197
             L D      ++    +++  E + +    L        +   +         PS A +
Sbjct: 253 AALRDA-----DY----LEESVERIREERERLYAALKALGLFGVF---------PSQANF 294

Query: 198 AWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELIS 257
             V+    E       L    I+ R+         ++R++ + + ++ D LL  L E++ 
Sbjct: 295 VLVRVPDAEAAALAEALLKKGILVRDCSSVGLLPGYLRIT-VGTPEENDRLLAALREVLK 353

Query: 258 KE 259
             
Sbjct: 354 GL 355

Length = 356

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	100.0
PLN00175	413	aminotransferase family protein; Provisional	100.0
PRK07681	399	aspartate aminotransferase; Provisional	100.0
PRK06207	405	aspartate aminotransferase; Provisional	100.0
PRK07366	388	succinyldiaminopimelate transaminase; Validated	100.0
PRK06348	384	aspartate aminotransferase; Provisional	100.0
PRK07324	373	transaminase; Validated	100.0
PRK07682	378	hypothetical protein; Validated	100.0
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	100.0
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	100.0
PRK08068	389	transaminase; Reviewed	100.0
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	100.0
PRK08636	403	aspartate aminotransferase; Provisional	100.0
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	100.0
PRK08960	387	hypothetical protein; Provisional	100.0
PRK12414	384	putative aminotransferase; Provisional	100.0
PLN02187	462	rooty/superroot1	100.0
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	100.0
PRK09275	527	aspartate aminotransferase; Provisional	100.0
PRK05957	389	aspartate aminotransferase; Provisional	100.0
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	100.0
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	100.0
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	100.0
PRK09148	405	aminotransferase; Validated	100.0
PRK06107	402	aspartate aminotransferase; Provisional	100.0
PRK07683	387	aminotransferase A; Validated	100.0
PRK06855	433	aminotransferase; Validated	100.0
PRK05942	394	aspartate aminotransferase; Provisional	100.0
PRK08912	387	hypothetical protein; Provisional	100.0
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	100.0
PRK06108	382	aspartate aminotransferase; Provisional	100.0
PRK07337	388	aminotransferase; Validated	100.0
PRK09082	386	methionine aminotransferase; Validated	100.0
PLN02656	409	tyrosine transaminase	100.0
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	100.0
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	100.0
PTZ00377	481	alanine aminotransferase; Provisional	100.0
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	100.0
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	100.0
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	100.0
PTZ00433	412	tyrosine aminotransferase; Provisional	100.0
PRK06290	410	aspartate aminotransferase; Provisional	100.0
PRK05839	374	hypothetical protein; Provisional	100.0
PRK07309	391	aromatic amino acid aminotransferase; Validated	100.0
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK08361	391	aspartate aminotransferase; Provisional	100.0
PRK08363	398	alanine aminotransferase; Validated	100.0
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	100.0
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK07777	387	aminotransferase; Validated	100.0
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	100.0
PRK08175	395	aminotransferase; Validated	100.0
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	100.0
PLN02231	534	alanine transaminase	100.0
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	100.0
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	100.0
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	100.0
PRK05764	393	aspartate aminotransferase; Provisional	100.0
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	100.0
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	100.0
PRK06358	354	threonine-phosphate decarboxylase; Provisional	100.0
PRK06425	332	histidinol-phosphate aminotransferase; Validated	100.0
PRK07550	386	hypothetical protein; Provisional	100.0
PRK07568	397	aspartate aminotransferase; Provisional	100.0
PRK09265	404	aminotransferase AlaT; Validated	100.0
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	100.0
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	100.0
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	100.0
PRK08056	356	threonine-phosphate decarboxylase; Provisional	100.0
PRK07392	360	threonine-phosphate decarboxylase; Validated	100.0
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	100.0
PTZ00376	404	aspartate aminotransferase; Provisional	100.0
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	100.0
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	100.0
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	100.0
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	100.0
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	100.0
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	100.0
PRK06836	394	aspartate aminotransferase; Provisional	100.0
PLN02397	423	aspartate transaminase	100.0
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	100.0
PRK09257	396	aromatic amino acid aminotransferase; Provisional	100.0
PRK01533	366	histidinol-phosphate aminotransferase; Validated	100.0
PLN02672	1082	methionine S-methyltransferase	100.0
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	100.0
PRK00950	361	histidinol-phosphate aminotransferase; Validated	100.0
PRK07908	349	hypothetical protein; Provisional	100.0
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	100.0
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	100.0
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	100.0
PRK06225	380	aspartate aminotransferase; Provisional	100.0
PRK09105	370	putative aminotransferase; Provisional	100.0
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	100.0
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	100.0
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	100.0
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	100.0
PRK08637	388	hypothetical protein; Provisional	100.0
PRK02731	367	histidinol-phosphate aminotransferase; Validated	100.0
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	100.0
PRK08354	311	putative aminotransferase; Provisional	100.0
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	100.0
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	100.0
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.97
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.97
PLN02368	407	alanine transaminase	99.97
PRK03321	352	putative aminotransferase; Provisional	99.97
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.96
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.94
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.94
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.93
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.92
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.91
PRK07049	427	methionine gamma-lyase; Validated	99.9
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.9
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.9
PRK13392	410	5-aminolevulinate synthase; Provisional	99.9
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.89
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.89
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.89
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.88
PRK02627	396	acetylornithine aminotransferase; Provisional	99.88
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.88
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.88
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.88
PLN02483	489	serine palmitoyltransferase	99.88
PLN02822	481	serine palmitoyltransferase	99.88
PRK06460	376	hypothetical protein; Provisional	99.87
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.87
PRK10534	333	L-threonine aldolase; Provisional	99.87
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.87
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.87
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.87
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.86
PRK02948	381	cysteine desulfurase; Provisional	99.86
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.86
PRK09064	407	5-aminolevulinate synthase; Validated	99.86
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.86
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.86
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.86
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.85
PRK08776	405	cystathionine gamma-synthase; Provisional	99.85
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.85
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.85
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.85
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.85
PLN02721	353	threonine aldolase	99.85
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.84
PLN02242	418	methionine gamma-lyase	99.84
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.84
PRK06767	386	methionine gamma-lyase; Provisional	99.84
PRK08045	386	cystathionine gamma-synthase; Provisional	99.84
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.84
PRK06234	400	methionine gamma-lyase; Provisional	99.83
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.83
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.83
PRK07505	402	hypothetical protein; Provisional	99.83
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.83
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.83
PRK07179	407	hypothetical protein; Provisional	99.83
PRK07582	366	cystathionine gamma-lyase; Validated	99.83
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.83
PRK08249	398	cystathionine gamma-synthase; Provisional	99.83
PRK13393	406	5-aminolevulinate synthase; Provisional	99.83
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.83
PRK04260	375	acetylornithine aminotransferase; Provisional	99.82
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.82
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.82
PRK08064	390	cystathionine beta-lyase; Provisional	99.81
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.81
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.81
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.81
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.81
PRK07811	388	cystathionine gamma-synthase; Provisional	99.81
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.8
PRK07503	403	methionine gamma-lyase; Provisional	99.8
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.8
PRK08574	385	cystathionine gamma-synthase; Provisional	99.8
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.79
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.79
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.79
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.79
PRK08861	388	cystathionine gamma-synthase; Provisional	99.79
PLN00144	382	acetylornithine transaminase	99.79
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.79
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.78
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.78
PRK07671	377	cystathionine beta-lyase; Provisional	99.78
PRK07050	394	cystathionine beta-lyase; Provisional	99.77
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.77
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.77
PRK09028	394	cystathionine beta-lyase; Provisional	99.77
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.76
PRK05939	397	hypothetical protein; Provisional	99.76
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.76
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.76
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.75
PLN02409	401	serine--glyoxylate aminotransaminase	99.75
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.75
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.75
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.74
PRK05967	395	cystathionine beta-lyase; Provisional	99.74
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.74
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.74
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.74
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.74
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.73
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.73
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.73
PLN02509	464	cystathionine beta-lyase	99.73
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.73
PRK05968	389	hypothetical protein; Provisional	99.73
PLN02624	474	ornithine-delta-aminotransferase	99.73
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.72
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.72
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.71
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.7
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.7
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.7
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.7
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.7
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.69
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.69
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.69
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.67
PRK14012	404	cysteine desulfurase; Provisional	99.67
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.65
PLN02955	476	8-amino-7-oxononanoate synthase	99.65
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.65
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.64
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.62
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.62
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.62
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.61
PRK08114	395	cystathionine beta-lyase; Provisional	99.61
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.6
PLN02651	364	cysteine desulfurase	99.6
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.59
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	99.59
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.58
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.58
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.57
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.56
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.56
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.55
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.54
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.52
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.51
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.5
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.5
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.49
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.48
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.47
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.46
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.45
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.44
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.44
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.43
PRK06434	384	cystathionine gamma-lyase; Validated	99.43
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.43
PRK06541	460	hypothetical protein; Provisional	99.41
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.4
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	99.4
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.39
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.39
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.38
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.38
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.37
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.35
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.34
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.33
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.3
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.3
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.27
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.27
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.26
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.23
PLN02724	805	Molybdenum cofactor sulfurase	99.23
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.23
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.22
PRK03080	378	phosphoserine aminotransferase; Provisional	99.21
PRK07678	451	aminotransferase; Validated	99.2
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.19
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.19
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.18
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.17
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.16
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.15
PRK07046	453	aminotransferase; Validated	99.13
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.12
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.12
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.12
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.12
PRK07482	461	hypothetical protein; Provisional	99.12
PRK04311	464	selenocysteine synthase; Provisional	99.11
PRK06062	451	hypothetical protein; Provisional	99.11
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.11
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.09
PRK05965	459	hypothetical protein; Provisional	99.09
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.08
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.08
PRK07481	449	hypothetical protein; Provisional	99.07
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.07
PRK06105	460	aminotransferase; Provisional	99.06
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.05
PRK06917	447	hypothetical protein; Provisional	99.04
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.03
PRK07480	456	putative aminotransferase; Validated	99.03
PRK08297	443	L-lysine aminotransferase; Provisional	99.0
PRK12403	460	putative aminotransferase; Provisional	98.99
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	98.99
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	98.98
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	98.98
PRK07483	443	hypothetical protein; Provisional	98.97
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	98.97
PLN02271	586	serine hydroxymethyltransferase	98.97
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	98.97
PRK13237	460	tyrosine phenol-lyase; Provisional	98.96
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	98.96
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	98.96
PRK02769	380	histidine decarboxylase; Provisional	98.96
PRK06148	1013	hypothetical protein; Provisional	98.95
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	98.95
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	98.94
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	98.94
PRK07036	466	hypothetical protein; Provisional	98.93
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	98.93
PRK06149	972	hypothetical protein; Provisional	98.93
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	98.92
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	98.92
KOG1368	384	consensus Threonine aldolase [Amino acid transport	98.9
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	98.87
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	98.85
PLN02414	993	glycine dehydrogenase (decarboxylating)	98.84
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	98.84
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	98.83
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	98.81
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	98.79
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	98.79
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	98.73
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	98.73
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	98.68
PLN02452	365	phosphoserine transaminase	98.66
PLN03032	374	serine decarboxylase; Provisional	98.55
PRK12566	954	glycine dehydrogenase; Provisional	98.55
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.5
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	98.47
PRK05367	954	glycine dehydrogenase; Provisional	98.47
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	98.44
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	98.43
PLN02880	490	tyrosine decarboxylase	98.42
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	98.39
PRK12462	364	phosphoserine aminotransferase; Provisional	98.33
PLN02590	539	probable tyrosine decarboxylase	98.32
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	98.27
PRK05367	954	glycine dehydrogenase; Provisional	98.22
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	98.18
PRK15029	755	arginine decarboxylase; Provisional	98.07
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	98.07
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	98.05
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	97.98
COG3844	407	Kynureninase [Amino acid transport and metabolism]	97.98
PRK13578	720	ornithine decarboxylase; Provisional	97.94
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	97.93
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	97.89
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	97.88
PLN02263	470	serine decarboxylase	97.78
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	97.76
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	97.72
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	97.65
PLN02414	993	glycine dehydrogenase (decarboxylating)	97.52
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	97.52
PRK15399	713	lysine decarboxylase LdcC; Provisional	97.46
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	97.44
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	97.31
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	97.3
PRK15400	714	lysine decarboxylase CadA; Provisional	97.24
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	97.18
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	97.05
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	96.97
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	96.44
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	96.39
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	96.39
PRK12566	954	glycine dehydrogenase; Provisional	96.27
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	95.65
KOG0629	510	consensus Glutamate decarboxylase and related prot	95.04
COG4100	416	Cystathionine beta-lyase family protein involved i	92.86
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	92.24
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	87.58
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	83.56

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-44  Score=313.30  Aligned_cols=240  Identities=21%  Similarity=0.282  Sum_probs=212.0

Q ss_pred             CCCcccchhhhhhccCcc---------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEE
Q 024997            1 MPFYPLYQEQTDYFESVD---------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKS   63 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~---------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~v   63 (259)
                      +|+||.|.....+.|+++         .+|.+|++.|++.+++++|+|++++||||||.+++        ++|+++|++|
T Consensus       120 ~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~i  199 (393)
T COG0436         120 DPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIII  199 (393)
T ss_pred             CCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEE
Confidence            699999999999998874         16899999999999999999999999999999993        8999999999


Q ss_pred             Eeeccc----cCC-CCCCCC---CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 024997           64 IYDHAY----FWP-HFAPIP---APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAF  135 (259)
Q Consensus        64 i~De~y----~~~-~~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~  135 (259)
                      |.||+|    |.. .+.++.   ...+++|.+.||||.|+++|||+||++++++++++.+...+.....|++.+.|.++.
T Consensus       200 i~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~  279 (393)
T COG0436         200 ISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAI  279 (393)
T ss_pred             EEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHH
Confidence            999999    443 233333   235789999999999999999999999996689999998888889999999999999


Q ss_pred             HHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeC-CCCCeeEEEecCCC--chHHH
Q 024997          136 KLLKVVLEDGG--NNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIR-PPSPAYAWVKCERE--EDKDC  210 (259)
Q Consensus       136 ~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~  210 (259)
                      .+|+.     .  +.+.++.++.+++|++.+.+.|+++++             +.+.. |+|++|+|++++..  +.+++
T Consensus       280 ~aL~~-----~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g-------------~~~~~~p~Ga~Y~~~~i~~~~d~~~f~  341 (393)
T COG0436         280 AALNG-----PQSDEVVEEMREEYRERRDLLVEALNEIGG-------------LSVVKPPEGAFYLFPKIPELLDSEEFA  341 (393)
T ss_pred             HHhcC-----ccchHHHHHHHHHHHHHHHHHHHHHHhcCC-------------eeeccCCCeeEEEEeecCCCCCHHHHH
Confidence            99994     3  357888889999999999999998775             55556 88999999999863  57999


Q ss_pred             HHHHHHcCeeeecCCcccC--CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          211 YGILKAAKIIGREGKKFRA--EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       211 ~~ll~~~gi~~~~g~~f~~--~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      .++|+++||++.||+.|+.  +.+++|+|++.+.++++++++++.+++..
T Consensus       342 ~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~~~l~~a~~rl~~~~~~  391 (393)
T COG0436         342 KKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARFLAE  391 (393)
T ss_pred             HHHHHhCCEEEecccccCCCCCCCeEEEEEecCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999995  67999999999889999999999998764

>PLN00175 aminotransferase family protein; Provisional

Probab=100.00  E-value=1.4e-39  Score=284.97  Aligned_cols=238  Identities=16%  Similarity=0.223  Sum_probs=201.2

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEe
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIY   65 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~   65 (259)
                      +|+|+.|...++..|.++.       +|.+|++.|++.+.+++++++++|||||||.+++        ++|+++|++||+
T Consensus       146 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~  225 (413)
T PLN00175        146 APFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFT  225 (413)
T ss_pred             CCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEE
Confidence            6999999999999988752       3678888999998888999999999999999983        788999999999


Q ss_pred             eccc----cCCCCCC---CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 024997           66 DHAY----FWPHFAP---IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLL  138 (259)
Q Consensus        66 De~y----~~~~~~~---~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l  138 (259)
                      ||+|    |.+...+   +....+++|+++||||.|+++|+|+||++++ +++++.+.........+++.+.|.++..+|
T Consensus       226 De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~-~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l  304 (413)
T PLN00175        226 DEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLTFATATPMQWAAVAAL  304 (413)
T ss_pred             ecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeC-HHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence            9999    2222222   2234578999999999999999999999999 699999998887777899999999999999


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC--C--chHHHHHHH
Q 024997          139 KVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--E--EDKDCYGIL  214 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~ll  214 (259)
                      +.     .+.++++.++.++++++.+.+.|+..+              +.+..|++++|+|+++..  .  +.+++..++
T Consensus       305 ~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~p~g~~f~~~~~~~~~~~~~~~~~~~ll  365 (413)
T PLN00175        305 RA-----PESYYEELKRDYSAKKDILVEGLKEVG--------------FKVYPSSGTYFVMVDHTPFGFENDIAFCEYLI  365 (413)
T ss_pred             hC-----CHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CeecCCCeeEEEEEeccccCCCCHHHHHHHHH
Confidence            73     456889999999999999999998754              455688999999999742  2  356777788


Q ss_pred             HHcCeeeecCCcccC----CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          215 KAAKIIGREGKKFRA----EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       215 ~~~gi~~~~g~~f~~----~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +++||.+.||..|+.    +.+++||+++.+++++++++++|++++++
T Consensus       366 ~~~gV~v~pg~~F~~~~~~~~~~iRls~~~~~e~l~~~~~rL~~~~~~  413 (413)
T PLN00175        366 EEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMKTKLKR  413 (413)
T ss_pred             HhCCEEEeCchHhCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHhC
Confidence            888999999999863    35799999988999999999999998864

>PRK07681 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.2e-39  Score=282.95  Aligned_cols=234  Identities=20%  Similarity=0.311  Sum_probs=196.4

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        +|.+|++++++.+.+++++++++|||||||.+++        ++|+++|++||
T Consensus       124 ~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI  203 (399)
T PRK07681        124 DPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVV  203 (399)
T ss_pred             CCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEE
Confidence            5999999999999998762        3567888888888778999999999999999983        78899999999


Q ss_pred             eeccc--c--CC-CCCCC---CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 024997           65 YDHAY--F--WP-HFAPI---PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFK  136 (259)
Q Consensus        65 ~De~y--~--~~-~~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~  136 (259)
                      +||+|  |  .. ...++   ....+++|+++||||.||++|+|+||++++ +++++.+.........+++.+.|.++..
T Consensus       204 ~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~-~~l~~~~~~~~~~~~~~~s~~~q~~~~~  282 (399)
T PRK07681        204 HDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGN-EEIVRALTQFKSNTDYGVFLPIQKAACA  282 (399)
T ss_pred             EeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEecC-HHHHHHHHHHHhhcccCCCHHHHHHHHH
Confidence            99999  2  22 12222   223467999999999999999999999998 7999999988876678899999999999


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHH
Q 024997          137 LLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGIL  214 (259)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll  214 (259)
                      +++.     ...++++.++.++++++.+.+.|+.++              +.+..|.+|+|+|++++..  +.++...++
T Consensus       283 ~l~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~p~~g~f~~~~l~~~~~~~~~~~~l~  343 (399)
T PRK07681        283 ALRN-----GAAFCEKNRGIYQERRDTLVDGFRTFG--------------WNVDKPAGSMFVWAEIPKGWTSLSFAYALM  343 (399)
T ss_pred             HHhC-----cHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CcccCCCeeeEEEEECCCCCCHHHHHHHHH
Confidence            9983     456888889999999999999998753              4445788999999999753  356677777


Q ss_pred             HHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHH
Q 024997          215 KAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDE  254 (259)
Q Consensus       215 ~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~  254 (259)
                      +++||.++||..|+. +++++|||++.+++++++++++|++
T Consensus       344 ~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~l~~l~~  384 (399)
T PRK07681        344 DRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENIRN  384 (399)
T ss_pred             HhCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence            779999999999985 4689999998888999999999988

>PRK06207 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.8e-39  Score=281.72  Aligned_cols=239  Identities=18%  Similarity=0.197  Sum_probs=197.9

Q ss_pred             CCCcccchhhhhhccCccc-----------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDY-----------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-----------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~   61 (259)
                      +|+|+.|...++..|.++.           +|++|++.|++.+++++++++++|||||||.+++        ++|+++|+
T Consensus       133 ~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~  212 (405)
T PRK06207        133 QPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGA  212 (405)
T ss_pred             CCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence            5999999999999887652           4678889999988878899999999999999993        77899999


Q ss_pred             EEEeeccc--c--CC-CCCCC---CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHH
Q 024997           62 KSIYDHAY--F--WP-HFAPI---PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLR  133 (259)
Q Consensus        62 ~vi~De~y--~--~~-~~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~  133 (259)
                      +||+||+|  |  .. ...++   ....+++++++||||+|+++|+|+||++++ +++++++.........+.+.+.|.+
T Consensus       213 ~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~-~~l~~~~~~~~~~~~~~~~~~~q~a  291 (405)
T PRK06207        213 TVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGS-PAIIDRMEKLQAIVSLRAAGYSQAV  291 (405)
T ss_pred             EEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcC-HHHHHHHHHHHhHhccCCCHHHHHH
Confidence            99999999  2  22 22222   224578999999999999999999999999 7999999988877778888999999


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--c-hHHH
Q 024997          134 AFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--E-DKDC  210 (259)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~  210 (259)
                      +..++++     ...++++.++.++++++.+.+.|+.+++             +.+..|++|+|+|++++..  + .++.
T Consensus       292 ~~~~l~~-----~~~~~~~~~~~~~~~r~~l~~~L~~~~~-------------~~~~~p~gg~fl~~~l~~~~~~~~~~~  353 (405)
T PRK06207        292 LRTWFSE-----PDGWMKDRIARHQAIRDDLLRVLRGVEG-------------VFVRAPQAGSYLFPRLPRLAVSLHDFV  353 (405)
T ss_pred             HHHHHhC-----cHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------ceecCCCeeEEEEEeCcccCCCHHHHH
Confidence            9999973     3456777888888889999888876532             4556788999999999752  3 4556


Q ss_pred             HHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          211 YGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       211 ~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ..+++++||.++||+.|+. .++++|||++.+.++++++++||.+++++
T Consensus       354 ~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~~~~~l~~al~rl~~~l~~  402 (405)
T PRK06207        354 KILRLQAGVIVTPGTEFSPHTADSIRLNFSQDHAAAVAAAERIAQLIER  402 (405)
T ss_pred             HHHHHhcCEEEeCchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            6666678999999999974 46899999998889999999999998764

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=100.00  E-value=3.6e-39  Score=280.75  Aligned_cols=236  Identities=16%  Similarity=0.198  Sum_probs=188.6

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        +|.+|++++++.+.+++++++++|||||||.+++        ++|+++|++||
T Consensus       123 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii  202 (388)
T PRK07366        123 DPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLV  202 (388)
T ss_pred             CCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEE
Confidence            6999999999999988763        3556666777766667899999999999999993        68899999999


Q ss_pred             eeccc--c--CCC--CCCCC---CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 024997           65 YDHAY--F--WPH--FAPIP---APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAF  135 (259)
Q Consensus        65 ~De~y--~--~~~--~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~  135 (259)
                      +||+|  |  .+.  ..++.   ...+++|+++||||+||++|+|+||++++ +++++++.........+.++..|.++.
T Consensus       203 ~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~-~~li~~l~~~~~~~~~~~~~~~~~~a~  281 (388)
T PRK07366        203 HDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGN-AQLIQALRQVKAVVDFNQYRGILNGAI  281 (388)
T ss_pred             EecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcCC-HHHHHHHHHHHhhcccCCCHHHHHHHH
Confidence            99999  3  221  22222   12356899999999999999999999998 799999998877655555444444455


Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC----chHHHH
Q 024997          136 KLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE----EDKDCY  211 (259)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  211 (259)
                      ..+..     .++++++.++.++++++.+.+.|+.++              +.+..|++|+|+|++++..    +.++..
T Consensus       282 ~~l~~-----~~~~l~~~~~~~~~~r~~l~~~L~~~~--------------~~~~~p~~g~f~~~~~~~~~~~~~~~~~~  342 (388)
T PRK07366        282 AALTG-----PQATVQQTVQIFRQRRDAFINALHQIG--------------WPVPLPEATMYVWAKLPEPWQGNSVEFCT  342 (388)
T ss_pred             HHHhC-----cHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CcccCCCeeEEEEEECCcccCCCHHHHHH
Confidence            55542     457899999999999999999998753              4445789999999999752    345566


Q ss_pred             HHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          212 GILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       212 ~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      .+++++||.++||+.|+. +.+++||+++.+++++++++++|++++
T Consensus       343 ~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~l  388 (388)
T PRK07366        343 QLVAQTGVAASPGSGFGKSGEGYVRFALVHDPDILEEAVERIAAFL  388 (388)
T ss_pred             HHHHhCCEEEeCchHhCcCCCCeEEEEecCCHHHHHHHHHHHHHhC
Confidence            777889999999999975 368999999889999999999999864

>PRK06348 aspartate aminotransferase; Provisional

Probab=100.00  E-value=8.8e-39  Score=277.87  Aligned_cols=236  Identities=18%  Similarity=0.273  Sum_probs=197.0

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|++|...++..|..+        .+|.+|++.|++.++++++++++++||||||.+++        ++|+++|++||
T Consensus       120 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii  199 (384)
T PRK06348        120 EPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFII  199 (384)
T ss_pred             CCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEE
Confidence            599999999999988754        24668889999988888899999999999999983        77899999999


Q ss_pred             eeccc--c--CCCCCC---CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Q 024997           65 YDHAY--F--WPHFAP---IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKL  137 (259)
Q Consensus        65 ~De~y--~--~~~~~~---~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  137 (259)
                      +||+|  |  .....+   +.+..+++|+++||||++|++|+|+||++++ +++++.+.........+++++.|.++..+
T Consensus       200 ~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  278 (384)
T PRK06348        200 SDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAP-DYIIETAKIINEGICFSAPTISQRAAIYA  278 (384)
T ss_pred             EecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecC-HHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence            99999  2  222222   2233678999999999999999999999999 69999999888777788999999999999


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC--C-chHHHHHHH
Q 024997          138 LKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--E-EDKDCYGIL  214 (259)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~ll  214 (259)
                      +..     .+.++.+.++.++++++.+.+.|+.+++             +.+..|++|+|+|++++.  . +.++...++
T Consensus       279 l~~-----~~~~~~~~~~~~~~r~~~~~~~L~~~~~-------------~~~~~p~gg~~~~~~~~~~~~~~~~l~~~l~  340 (384)
T PRK06348        279 LKH-----RDTIVPLIKEEFQKRLEYAYKRIESIPN-------------LSLHPPKGSIYAFINIKKTGLSSVEFCEKLL  340 (384)
T ss_pred             HhC-----cHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------ceeccCCeeEEEEEecccCCCCHHHHHHHHH
Confidence            873     5677888899999999999999986542             445688999999999974  2 345666677


Q ss_pred             HHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHH
Q 024997          215 KAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDEL  255 (259)
Q Consensus       215 ~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~  255 (259)
                      +++||.++||+.|+. +.+++|||++.+++++++++++|+++
T Consensus       341 ~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~  382 (384)
T PRK06348        341 KEAHVLVIPGKAFGESGEGYIRLACTVGIEVLEEAFNRIEKM  382 (384)
T ss_pred             HhCCEEEcCchhhccCCCCeEEEEecCCHHHHHHHHHHHHhh
Confidence            788999999999985 46899999988899999999999864

>PRK07324 transaminase; Validated

Probab=100.00  E-value=1e-38  Score=276.18  Aligned_cols=238  Identities=16%  Similarity=0.242  Sum_probs=199.7

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++        .+|.+|+++|++.++++++++++++||||||.+++        ++|+++|+++|
T Consensus       111 ~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii  190 (373)
T PRK07324        111 YPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVL  190 (373)
T ss_pred             CCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence            599999999999998765        23667888998888888999999999999999983        77899999999


Q ss_pred             eeccc--c--CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q 024997           65 YDHAY--F--WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKV  140 (259)
Q Consensus        65 ~De~y--~--~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  140 (259)
                      +||+|  +  .....++.+..+++|+++||||.||++|+|+||++++ +++++.+.+.....+.+++.+.|.++..+++.
T Consensus       191 ~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~-~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~  269 (373)
T PRK07324        191 SDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAAN-EEVIDILRKYRDYTMICAGVFDDMLASLALEH  269 (373)
T ss_pred             EEccccccccCCCCCChhhccCCEEEEecchhhcCCccceeEEEecC-HHHHHHHHHHhCcEEecCChHHHHHHHHHHcC
Confidence            99999  2  2222333345568999999999999999999999998 79999999988877788899999999888872


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHcC
Q 024997          141 VLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAK  218 (259)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~g  218 (259)
                           .+.++.+.++.++++++.+.+.|+..++             +.+..|.+|+|.|+.++..  +.+++.++++++|
T Consensus       270 -----~~~~l~~~~~~~~~~~~~l~~~l~~~~~-------------~~~~~p~gg~~~~i~~~~~~~~~~~~~~ll~~~g  331 (373)
T PRK07324        270 -----RDAILERNRKIVRTNLAILDEWVAKEPR-------------VSYVKPKAVSTSFVKLDVDMPSEDFCLKLLKETG  331 (373)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------ceEECCCceEEEEEEeCCCCCHHHHHHHHHHhcC
Confidence                 4567888889999999999998886542             5566889999888887642  4567788888899


Q ss_pred             eeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          219 IIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       219 i~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      |.++||+.|+. ++++|||++.+++++++++++|.+++.+
T Consensus       332 v~v~pg~~F~~-~~~iRis~~~~~~~l~~~l~rl~~~l~~  370 (373)
T PRK07324        332 VLLVPGNRFDL-EGHVRIGYCCDTETLKKGLKKLSEFLRE  370 (373)
T ss_pred             EEEECccccCC-CCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            99999999986 4799999988999999999999998864

>PRK07682 hypothetical protein; Validated

Probab=100.00  E-value=8.5e-39  Score=277.54  Aligned_cols=238  Identities=17%  Similarity=0.211  Sum_probs=198.8

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|....        .|.+|+++|++.+.++++++++++||||||.+++        ++|+++|+++|
T Consensus       112 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii  191 (378)
T PRK07682        112 EPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVL  191 (378)
T ss_pred             CCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEE
Confidence            5999999999998887641        4678889999988888999999999999999983        78999999999


Q ss_pred             eeccc--c--CCCCCC---CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Q 024997           65 YDHAY--F--WPHFAP---IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKL  137 (259)
Q Consensus        65 ~De~y--~--~~~~~~---~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  137 (259)
                      +||+|  |  .+...+   +.+..+++++++||||.||++|+|+||++++ +++++++.+.......+++.+.|.++.++
T Consensus       192 ~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~-~~~i~~l~~~~~~~~~~~~~~~q~a~~~~  270 (378)
T PRK07682        192 SDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAP-VYFSEAMLKIHQYSMMCAPTMAQFAALEA  270 (378)
T ss_pred             EehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcC-HHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence            99999  2  222222   2234578999999999999999999999999 79999998877666678899999999999


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC--C-chHHHHHHH
Q 024997          138 LKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--E-EDKDCYGIL  214 (259)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~ll  214 (259)
                      ++.     .+.++.+.++.++++++.+.+.|++++              +.+..|++++|+|+.+..  . +.++...++
T Consensus       271 l~~-----~~~~~~~~~~~~~~~~~~~~~~L~~~~--------------~~~~~p~g~~~~~~~~~~~~~~~~~~~~~ll  331 (378)
T PRK07682        271 LRA-----GNDDVIRMRDSYRKRRNFFVTSFNEIG--------------LTCHVPGGAFYAFPSISSTGLSSEEFAEQLL  331 (378)
T ss_pred             HhC-----ChHHHHHHHHHHHHHHHHHHHHHHHCC--------------CccCCCCeeEEEEEeccCCCCCHHHHHHHHH
Confidence            973     455788889999999999999999764              455678999999998743  2 355666777


Q ss_pred             HHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          215 KAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       215 ~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +++||.++||..|+. +++++|||++.+.+++++++++|++++++
T Consensus       332 ~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~  376 (378)
T PRK07682        332 LEEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKRMKRFVEN  376 (378)
T ss_pred             HhCCEEEcCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence            788999999999975 46899999988889999999999998864

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-39  Score=270.79  Aligned_cols=239  Identities=18%  Similarity=0.264  Sum_probs=206.2

Q ss_pred             CCCcccchhhhhhccCcc--------------cccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHhhcC
Q 024997            1 MPFYPLYQEQTDYFESVD--------------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVLKG   58 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la~~   58 (259)
                      +|.|+.|.....+.|.+.              ..|.+|++.|+..++++|++|++|+||||||.++        +++|++
T Consensus       124 eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k  203 (420)
T KOG0257|consen  124 EPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKK  203 (420)
T ss_pred             cCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHH
Confidence            699999999999999876              2478999999999999999999999999999999        389999


Q ss_pred             CCcEEEeeccc----cCC----CCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHH
Q 024997           59 PYAKSIYDHAY----FWP----HFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSREC  130 (259)
Q Consensus        59 ~~~~vi~De~y----~~~----~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (259)
                      +|.+||.||+|    |.+    ....+++..++++.++|+||+||++|||+||++++ +.+...+..........++++.
T Consensus       204 ~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp-~~L~~~~~~vh~~~~~~~~Tp~  282 (420)
T KOG0257|consen  204 HGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGP-KHLYSALFPVHQNFVFTCPTPI  282 (420)
T ss_pred             CCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeech-HHhhhhHHHHhhccccccCcHH
Confidence            99999999999    333    24556788999999999999999999999999997 7999999998888888899999


Q ss_pred             HHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--
Q 024997          131 QLRAFKLLKVVLE---DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--  205 (259)
Q Consensus       131 q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  205 (259)
                      |.+.++++.....   ...-.++....+.|+++|+.+.+.|.+++              ++.+.|++++|+|++++..  
T Consensus       283 q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg--------------~~v~~p~gayyl~adfs~~~~  348 (420)
T KOG0257|consen  283 QEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEELG--------------LKVTGPEGAYYLWADFSLAKS  348 (420)
T ss_pred             HHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhcC--------------CccccCCCceEEEEecccccc
Confidence            9998888874220   00114566689999999999999999986              7778999999999999811  


Q ss_pred             ------------chHHHHHHHHHcCeeeecCCcccCC------CCeEEEEeecChhhHHHHHHHHHH
Q 024997          206 ------------EDKDCYGILKAAKIIGREGKKFRAE------ARFVRLSLLKSQDDFDLLLHRLDE  254 (259)
Q Consensus       206 ------------~~~~~~~ll~~~gi~~~~g~~f~~~------~~~~Ris~~~~~~~~~~~~~~l~~  254 (259)
                                  +..+...++++.|+.+.|++.|+..      .+.+|+++....+.++.++++|++
T Consensus       349 ~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k~~~~L~~a~e~l~~  415 (420)
T KOG0257|consen  349 WPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCKADETLRKAIERLKK  415 (420)
T ss_pred             CCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence                        3466888999999999999999952      568899998899999999999983

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=100.00  E-value=2.9e-38  Score=274.71  Aligned_cols=234  Identities=19%  Similarity=0.258  Sum_probs=195.5

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|..+.        +|.+|++++++.+.+++++++++|||||||.+++        ++|+++|++||
T Consensus       122 ~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii  201 (383)
T TIGR03540       122 DPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVC  201 (383)
T ss_pred             CCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEE
Confidence            5999999999999887652        3567888888888778999999999999999993        78999999999


Q ss_pred             eeccc----cCC-CCCCCC---CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 024997           65 YDHAY----FWP-HFAPIP---APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFK  136 (259)
Q Consensus        65 ~De~y----~~~-~~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~  136 (259)
                      +||+|    |.+ ...++.   ...+++|+++||||.||++|+|+||++++ +++++++.........+++.+.|.++..
T Consensus       202 ~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~  280 (383)
T TIGR03540       202 HDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGN-ADLIAGLGKVKTNVDSGVFQAIQYAAIA  280 (383)
T ss_pred             EecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCC-HHHHHHHHHHHHhcccCCChHHHHHHHH
Confidence            99999    222 222222   23467899999999999999999999998 7999999888776667888899999999


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHH
Q 024997          137 LLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGIL  214 (259)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll  214 (259)
                      +++.     .+.++++.++.++++++.+.+.|++++              +.+..+.+|+|+|++++..  +.++...++
T Consensus       281 ~l~~-----~~~~~~~~~~~~~~~~~~~~~~L~~~~--------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll  341 (383)
T TIGR03540       281 ALNG-----PQDVVKEIRKIYQRRRDLLLEALKKIG--------------IDVEKPKATFYVWVPVPEGYTSAEFAARLL  341 (383)
T ss_pred             HHhC-----CHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CEecCCCcceEEEEECCCCCCHHHHHHHHH
Confidence            9973     567888899999999999999999764              5566788999999998743  356666777


Q ss_pred             HHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHH
Q 024997          215 KAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDE  254 (259)
Q Consensus       215 ~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~  254 (259)
                      +++||.++||..|+. +.+++||+++.+++++++++++|++
T Consensus       342 ~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~  382 (383)
T TIGR03540       342 EETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKK  382 (383)
T ss_pred             HHCCEEEecchhhCccCCCeEEEEecCCHHHHHHHHHHHhh
Confidence            789999999999985 4689999998888999999999875

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK08068 transaminase; Reviewed

Probab=100.00  E-value=2.1e-38  Score=276.00  Aligned_cols=235  Identities=19%  Similarity=0.234  Sum_probs=193.5

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        +|.+|++++++.+.+++++++++|||||||.+++        ++|+++|++||
T Consensus       125 ~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii  204 (389)
T PRK08068        125 DPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVV  204 (389)
T ss_pred             CCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEE
Confidence            5999999999999988752        4667788888888778899999999999999993        68899999999


Q ss_pred             eeccc--c--CC-CCCCC---CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 024997           65 YDHAY--F--WP-HFAPI---PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFK  136 (259)
Q Consensus        65 ~De~y--~--~~-~~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~  136 (259)
                      +||+|  |  .. ...++   .+..+++++++||||+||++|+|+||++++ +++++.+.+.......+.+++.|.++..
T Consensus       205 ~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~-~~l~~~l~~~~~~~~~~~~~~~q~~~~~  283 (389)
T PRK08068        205 HDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGN-ESVIEAINLLQDHLFVSLFGAIQDAAIE  283 (389)
T ss_pred             EehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEecC-HHHHHHHHHHHhhccCCCChHHHHHHHH
Confidence            99999  3  22 12122   133567899999999999999999999998 7999999988876666777778888888


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-c-hHHHHHHH
Q 024997          137 LLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-E-DKDCYGIL  214 (259)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ll  214 (259)
                      ++..     ...++++.++.++++++.+.+.|+.++              +.+.++.+|+|+|++++.. + .++...++
T Consensus       284 ~l~~-----~~~~~~~~~~~~~~~r~~~~~~L~~~g--------------~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~  344 (389)
T PRK08068        284 ALLS-----DQSCVAELVARYESRRNAFISACREIG--------------WEVDAPKGSFFAWMPVPKGYTSEQFADLLL  344 (389)
T ss_pred             HHhC-----cHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CcccCCCeeEEEEEECCCCCCHHHHHHHHH
Confidence            8863     457888999999999999999998764              4455788999999999753 3 45566666


Q ss_pred             HHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHH
Q 024997          215 KAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDEL  255 (259)
Q Consensus       215 ~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~  255 (259)
                      +++||.++||..|+. +.+++||+++.+++++++++++|+++
T Consensus       345 ~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~  386 (389)
T PRK08068        345 EKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLREAVERIGKL  386 (389)
T ss_pred             HhCCEEEecchHhCccCCCeEEEEEcCCHHHHHHHHHHHHHh
Confidence            668999999999985 46899999988888999999999864

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=100.00  E-value=1.7e-38  Score=277.17  Aligned_cols=235  Identities=14%  Similarity=0.197  Sum_probs=193.3

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|..+++..|.++        .+|.+|++.+++.+.++++++++||||||||.+++        ++|+++|++||
T Consensus       124 ~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii  203 (396)
T PRK09147        124 NPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIA  203 (396)
T ss_pred             CCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEE
Confidence            599999999999988765        23678888898877778899999999999999993        78899999999


Q ss_pred             eeccc--c--CCC---CCCC---C----CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHH
Q 024997           65 YDHAY--F--WPH---FAPI---P----APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSREC  130 (259)
Q Consensus        65 ~De~y--~--~~~---~~~~---~----~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (259)
                      +||+|  |  ...   ...+   .    +..+++|+++||||.|+++|+|+||++++ +++++.+.........+++.+.
T Consensus       204 ~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~-~~l~~~~~~~~~~~~~~~~~~~  282 (396)
T PRK09147        204 SDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGD-AALLKKFLLYRTYHGCAMPPAV  282 (396)
T ss_pred             eeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCC-HHHHHHHHHHhhhcccCCCHHH
Confidence            99999  2  221   1111   0    12468999999999999999999999999 6999999887766667889999


Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHH
Q 024997          131 QLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDC  210 (259)
Q Consensus       131 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (259)
                      |.++...+.      .+.++.+.++.++++++.+.+.|+..               +.+..|++|+|+|++++..+.++.
T Consensus       283 q~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~L~~~---------------~~~~~p~~g~f~~~~~~~~~~~~~  341 (396)
T PRK09147        283 QAASIAAWN------DEAHVRENRALYREKFDAVTPILAPV---------------LDVQLPDAGFYLWAKVPGDDTEFA  341 (396)
T ss_pred             HHHHHHHhc------chhHHHHHHHHHHHHHHHHHHHHHHh---------------cCCCCCCeeEEEEEECCCCHHHHH
Confidence            998877775      34688889999999999999998853               123478899999999973345667


Q ss_pred             HHHHHHcCeeeecCCcccC-------CCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          211 YGILKAAKIIGREGKKFRA-------EARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       211 ~~ll~~~gi~~~~g~~f~~-------~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      ..+++++||.+.||..|+.       +.+++||+++.+++++++++++|++++.
T Consensus       342 ~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~~~~~l~~~l~rl~~~~~  395 (396)
T PRK09147        342 RRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVAPLAECVEAAERIVDFCR  395 (396)
T ss_pred             HHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhc
Confidence            7777789999999998862       2579999998889999999999999874

>PRK08636 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.9e-38  Score=276.21  Aligned_cols=238  Identities=20%  Similarity=0.239  Sum_probs=193.5

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhh----hcccC---CCCceEEEEcCCCCCChhhHH--------Hhhc
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANL----WGNAS---SDTHLVEFVTAPNNPDGQMNK--------AVLK   57 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~----l~~~~---~~~~~~i~i~~p~NPtG~~~~--------~la~   57 (259)
                      +|+|+.|..+++..|.++.        .|++|++.    +++.+   .+++++++++|||||||.+++        ++|+
T Consensus       126 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~  205 (403)
T PRK08636        126 DPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAK  205 (403)
T ss_pred             CCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHH
Confidence            6999999999999988762        25677664    45555   257899999999999999993        7899


Q ss_pred             CCCcEEEeeccc--c--CC-CCCC---CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHH
Q 024997           58 GPYAKSIYDHAY--F--WP-HFAP---IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRE  129 (259)
Q Consensus        58 ~~~~~vi~De~y--~--~~-~~~~---~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~  129 (259)
                      ++|++||+||+|  |  .+ ...+   +....+++++++||||.||++|+|+||++++ +++++.+.+.......+++++
T Consensus       206 ~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~-~~li~~~~~~~~~~~~~~~~~  284 (403)
T PRK08636        206 KERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGN-KKLVGALKKIKSWLDYGMFTP  284 (403)
T ss_pred             HcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeeeeeCC-HHHHHHHHHHHHHhcccCChH
Confidence            999999999999  2  22 1222   2223457888999999999999999999998 799999988877656778888


Q ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC----
Q 024997          130 CQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE----  205 (259)
Q Consensus       130 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  205 (259)
                      .|.++..+++     ..+.++++.++.++++++.+.+.|+..+              +.+..|.+|+|+|++++..    
T Consensus       285 ~q~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~L~~~~--------------~~~~~p~~g~~~~~~l~~~~~~~  345 (403)
T PRK08636        285 IQVAATIALD-----GDQSCVEEIRETYRKRRDVLIESFANAG--------------WELQKPRASMFVWAKIPEPARHL  345 (403)
T ss_pred             HHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CcccCCCcceEEEEECCCccCCC
Confidence            9998877765     2467888899999999999999998753              4456789999999999752    


Q ss_pred             -chHHHHHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          206 -EDKDCYGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       206 -~~~~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                       +.+++..+++++||.++||..|+. +.+++||+++.+.+++++++++|+++++.
T Consensus       346 ~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~~~rl~~~l~~  400 (403)
T PRK08636        346 GSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAARNIKKFLKE  400 (403)
T ss_pred             CHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence             246666778889999999999985 36899999988899999999999998863

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=100.00  E-value=1.8e-38  Score=279.73  Aligned_cols=238  Identities=16%  Similarity=0.166  Sum_probs=192.9

Q ss_pred             CCCcccchhhhhhccCcccc-----cccChhhhcccCCCCceEEEEc-CCCCCChhhHH--------HhhcCC-CcEEEe
Q 024997            1 MPFYPLYQEQTDYFESVDYK-----FEGEANLWGNASSDTHLVEFVT-APNNPDGQMNK--------AVLKGP-YAKSIY   65 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~-----~~~d~~~l~~~~~~~~~~i~i~-~p~NPtG~~~~--------~la~~~-~~~vi~   65 (259)
                      +|+|+.|...++..|.++..     .++|++.|++.+++++++++++ |||||||.+++        ++|+++ +++||+
T Consensus       172 ~P~y~~~~~~~~~~g~~~~~v~~~~~g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~  251 (431)
T PRK15481        172 DPCFLSSINMLRYAGFSASPVSVDAEGMQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVII  251 (431)
T ss_pred             CCCcHHHHHHHHHcCCeEEeeccCCCCCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEe
Confidence            69999999999999987633     2567788888886678877776 99999999993        678888 999999


Q ss_pred             eccc--c--CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Q 024997           66 DHAY--F--WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVV  141 (259)
Q Consensus        66 De~y--~--~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~  141 (259)
                      ||+|  |  .+....+....+++++++||||+|+ +|+|+||++++ +++++.+.........+++.+.|.++..+|++ 
T Consensus       252 De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~-~GlRiG~~i~~-~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~-  328 (431)
T PRK15481        252 DDHFALLSSSPYHSVIPQTTQRWALIRSVSKALG-PDLRLAFVASD-SATSARLRLRLNSGTQWVSHLLQDLVYACLTD-  328 (431)
T ss_pred             cCchhhhccCCCCCCCcCCCCCEEEEeeeccccC-CCceeEEEeCC-HHHHHHHHHHHhccccCCCHHHHHHHHHHHhC-
Confidence            9999  3  2222222234468999999999999 99999999999 69999998766655567899999999999984 


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeee
Q 024997          142 LEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIG  221 (259)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~  221 (259)
                        +..+.++.+.++.++++++.+.+.|+..+              +.+..|++|+|+|++++..+.++. +.|.++||.+
T Consensus       329 --~~~~~~l~~~~~~~~~~r~~~~~~L~~~~--------------~~~~~p~gg~f~~~~l~~~~~~~~-~~l~~~gV~v  391 (431)
T PRK15481        329 --PEYQARLAQARLFYAQRRQKLARALQQYG--------------IAIPSPGDGLNLWLPLDTDSQATA-LTLAKSGWLV  391 (431)
T ss_pred             --ccHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------CccccCCCeEEEEEECCCCHHHHH-HHHHHCCcEE
Confidence              22345688899999999999999998753              444578999999999975334444 4455789999


Q ss_pred             ecCCcccCC--CCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          222 REGKKFRAE--ARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       222 ~~g~~f~~~--~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      +||+.|+.+  .+++|||++. +++++++++++|++++++
T Consensus       392 ~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~~  431 (431)
T PRK15481        392 REGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALNR  431 (431)
T ss_pred             ecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhcC
Confidence            999999642  4689999987 889999999999998864

>PRK08960 hypothetical protein; Provisional

Probab=100.00  E-value=3.7e-38  Score=274.29  Aligned_cols=238  Identities=18%  Similarity=0.250  Sum_probs=197.2

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++        .+|.+|++.|++.++++++++++++||||||.+++        ++|+++|+++|
T Consensus       123 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li  202 (387)
T PRK08960        123 DPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLV  202 (387)
T ss_pred             CCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEE
Confidence            699999999999888764        13678888999888888888899999999999983        67899999999


Q ss_pred             eeccc--c--CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q 024997           65 YDHAY--F--WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKV  140 (259)
Q Consensus        65 ~De~y--~--~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  140 (259)
                      +||+|  |  .....++....+++++++||||.||++|+|+||++++ +++++.+.........+++.+.|.++..++++
T Consensus       203 ~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~-~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~  281 (387)
T PRK08960        203 VDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVAP-PAAVPELEKLAQNLYISASTPAQHAALACFEP  281 (387)
T ss_pred             EEccccccccCCCCCChhhccCCEEEEeecccccCCcccEEEEEEcC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHhhc
Confidence            99999  2  2222233344568999999999999999999999999 69999999888777788899999999888873


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccce-eeCCCCCeeEEEecCC--Cc-hHHHHHHHHH
Q 024997          141 VLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFK-KIRPPSPAYAWVKCER--EE-DKDCYGILKA  216 (259)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~-~~~~~~ll~~  216 (259)
                          ..+.++.+.++.++++++.+.+.|+.++              +. +..|.+|+|+|++++.  .+ .++...++++
T Consensus       282 ----~~~~~l~~~~~~~~~~~~~l~~~L~~~~--------------~~~~~~p~g~~f~~~~~~~~~~~~~~~~~~ll~~  343 (387)
T PRK08960        282 ----ETLAILEARRAEFARRRDFLLPALRELG--------------FGIAVEPQGAFYLYADISAFGGDAFAFCRHFLET  343 (387)
T ss_pred             ----CcHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CcCCcCCCeeEEEEEeccccCCCHHHHHHHHHHh
Confidence                2457888899999999999999998754              22 2367899999999975  23 4556677778


Q ss_pred             cCeeeecCCcccC--CCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          217 AKIIGREGKKFRA--EARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       217 ~gi~~~~g~~f~~--~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      +||.++||+.|+.  +.+++||+++.+.+++++++++|++++.
T Consensus       344 ~gi~v~pg~~f~~~~~~~~iRi~~~~~~~~l~~al~~l~~~~~  386 (387)
T PRK08960        344 EHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIARGLR  386 (387)
T ss_pred             CCEEEcCchHhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence            9999999999975  3579999999888999999999998764

>PRK12414 putative aminotransferase; Provisional

Probab=100.00  E-value=3.3e-38  Score=274.23  Aligned_cols=233  Identities=12%  Similarity=0.153  Sum_probs=192.8

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEe
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIY   65 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~   65 (259)
                      +|+|+.|...++..|.+..       +|.+|++.|++.+++++++++++|||||||.+++        ++|+++|+++|+
T Consensus       121 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~  200 (384)
T PRK12414        121 EPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILS  200 (384)
T ss_pred             CCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEE
Confidence            5999999999998887652       4668889999988888999999999999999872        778999999999


Q ss_pred             eccc----cCC-CCCCCC---CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Q 024997           66 DHAY----FWP-HFAPIP---APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKL  137 (259)
Q Consensus        66 De~y----~~~-~~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  137 (259)
                      ||+|    |.. ...++.   ...+++++++||||.||++|+|+||++++ +++++.+.........+++.+.|.++..+
T Consensus       201 De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~-~~l~~~l~~~~~~~~~~~s~~~q~a~~~~  279 (384)
T PRK12414        201 DEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAP-AELMDEIRKVHQFMVFSADTPMQHAFAEA  279 (384)
T ss_pred             hhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecC-HHHHHHHHHHHhheecCCCcHHHHHHHHH
Confidence            9999    222 222222   33568999999999999999999999999 69999999888767788999999999999


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC----CchHHHHHH
Q 024997          138 LKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER----EEDKDCYGI  213 (259)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l  213 (259)
                      +++     . .+..+.++.++++++.+.+.|++.+              +.+.++.+|+|+|++++.    .+.+++.++
T Consensus       280 l~~-----~-~~~~~~~~~~~~~r~~l~~~L~~~g--------------~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~  339 (384)
T PRK12414        280 LAE-----P-ASYLGLGAFYQRKRDLLARELAGSR--------------FELLPSEGSFFMLARFRHFSDESDSDFVLRL  339 (384)
T ss_pred             hcC-----C-hHHHHHHHHHHHHHHHHHHHHHhCC--------------CeecCCCcceEEEEcccccCCCCHHHHHHHH
Confidence            873     2 2344578889999999999998753              455688999999998864    245777788


Q ss_pred             HHHcCeeeecCCcccC---CCCeEEEEeecChhhHHHHHHHHHH
Q 024997          214 LKAAKIIGREGKKFRA---EARFVRLSLLKSQDDFDLLLHRLDE  254 (259)
Q Consensus       214 l~~~gi~~~~g~~f~~---~~~~~Ris~~~~~~~~~~~~~~l~~  254 (259)
                      ++++||.+.||+.|+.   +.+++||+++.+++++++++++|.+
T Consensus       340 l~~~gV~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~~~rl~~  383 (384)
T PRK12414        340 IRDARVATIPLSAFYTDGTDTGLIRLSFSKDDATLVEGARRLCS  383 (384)
T ss_pred             HHhCCEEEecchhhcCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence            8889999999999963   2579999999899999999999975

>PLN02187 rooty/superroot1

Probab=100.00  E-value=3.7e-38  Score=278.85  Aligned_cols=240  Identities=18%  Similarity=0.216  Sum_probs=192.7

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++        ..|++|+++|++.+++++++++++|||||||.+++        ++|+++|++||
T Consensus       162 ~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI  241 (462)
T PLN02187        162 RPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVI  241 (462)
T ss_pred             CCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEE
Confidence            599999999999888765        35788999999988888899999999999999983        78899999999


Q ss_pred             eeccc----cCC-CCCCCC--CCCCCeEEEeccccccCCCcceEEEEEecC-HH---HHHHHHHhhhhhcC--CCCHHHH
Q 024997           65 YDHAY----FWP-HFAPIP--APADEELMIFTISKLTGHAGSRFGWAVIKD-EA---VYQRMSAYISLNTM--GVSRECQ  131 (259)
Q Consensus        65 ~De~y----~~~-~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~-~~---~~~~~~~~~~~~~~--~~~~~~q  131 (259)
                      +||+|    |.+ ...++.  ....++++++||||.|+++|||+||+++++ +.   +++.+.........  +++.+.|
T Consensus       242 ~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q  321 (462)
T PLN02187        242 SDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQ  321 (462)
T ss_pred             EeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHH
Confidence            99999    322 222332  122469999999999999999999999853 23   34566665554333  5689999


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccce-eeCCCCCeeEEEecCC------
Q 024997          132 LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFK-KIRPPSPAYAWVKCER------  204 (259)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------  204 (259)
                      .++.++++.    ..+.++++.++.++++++.+.+.|++++.             .. ...|++|+|+|++++.      
T Consensus       322 ~a~~~~L~~----~~~~~l~~~~~~l~~~r~~l~~~L~~~~~-------------~~~~~~P~gg~fl~~~l~~~~~~~~  384 (462)
T PLN02187        322 AALPAILEK----ADKNFFAKKNKILKHNVDLVCDRLKDIPC-------------VVCPKKPESCTYLLTKLELSLMDNI  384 (462)
T ss_pred             HHHHHHHhc----CcHHHHHHHHHHHHHHHHHHHHHHhhCCC-------------CcCCCCCCEeEEEEeecChhhCCCC
Confidence            999999973    24578999999999999999999997652             11 2367889999998752      


Q ss_pred             -CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          205 -EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       205 -~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                       .+.+++..+++++||.++||+.|+. ++++||+++.+++.++++++||.+++++
T Consensus       385 ~~~~~~~~~ll~~~gV~v~pG~~fg~-~~~iRis~~~~~e~l~~al~rL~~~l~~  438 (462)
T PLN02187        385 KDDIDFCVKLAREENLVFLPGDALGL-KNWMRITIGVEAHMLEDALERLKGFCTR  438 (462)
T ss_pred             CCHHHHHHHHHhhCCEEEECccccCC-CCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence             1346677888899999999999974 5899999988999999999999999863

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=100.00  E-value=4.5e-38  Score=273.65  Aligned_cols=234  Identities=18%  Similarity=0.233  Sum_probs=193.6

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        +|.+|++++++.+.+++++++++|||||||.+++        ++|+++|++||
T Consensus       124 ~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii  203 (385)
T PRK09276        124 DPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVC  203 (385)
T ss_pred             CCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEE
Confidence            5999999999999887652        3667888888888778999999999999999993        77899999999


Q ss_pred             eeccc--c--CC-CCCCCC---CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 024997           65 YDHAY--F--WP-HFAPIP---APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFK  136 (259)
Q Consensus        65 ~De~y--~--~~-~~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~  136 (259)
                      +||+|  |  .. ...++.   ...+++|+++||||.||++|+|+||++++ +++++.+.+.......+++.+.|.++..
T Consensus       204 ~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~  282 (385)
T PRK09276        204 HDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGN-ADLIAGLGKVKSNVDSGVFQAIQEAGIA  282 (385)
T ss_pred             EecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCC-HHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence            99999  2  21 122222   23467899999999999999999999999 7999999987776667788889999999


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHH
Q 024997          137 LLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGIL  214 (259)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll  214 (259)
                      +++.     .+.++++.++.++++++.+.+.|++++              +.+..+.+|+|+|++++..  +.++..+++
T Consensus       283 ~l~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~l~~~ll  343 (385)
T PRK09276        283 ALNG-----PQEVVEELRKIYQERRDILVEGLRKLG--------------LEVEPPKATFYVWAPVPKGYTSAEFATLLL  343 (385)
T ss_pred             HHcC-----cHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CcccCCCcceEEEEECCCCCCHHHHHHHHH
Confidence            9873     567888899999999999999998753              4455788999999999753  345667777


Q ss_pred             HHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHH
Q 024997          215 KAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDE  254 (259)
Q Consensus       215 ~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~  254 (259)
                      +++||.++||..|+. +++++|||++.+++++.+++++|.+
T Consensus       344 ~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~  384 (385)
T PRK09276        344 DKAGVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVERIKK  384 (385)
T ss_pred             HhCCEEECCchhhCCCCCCeEEEEeCCCHHHHHHHHHHHhh
Confidence            788999999999975 3689999998888999999999875

>PRK09275 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.2e-38  Score=282.09  Aligned_cols=238  Identities=16%  Similarity=0.235  Sum_probs=188.0

Q ss_pred             CCCcccchhhhhhccCcc----------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------Hhhc--CCC
Q 024997            1 MPFYPLYQEQTDYFESVD----------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLK--GPY   60 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~----------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~--~~~   60 (259)
                      +|+|++|...+++.|...          .+|.+|.++|++++++++++++++|||||||.+++        ++|+  ++|
T Consensus       197 ~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~  276 (527)
T PRK09275        197 TPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPD  276 (527)
T ss_pred             CCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCC
Confidence            699999999988875322          24889999999988999999999999999999983        6784  469


Q ss_pred             cEEEeeccc--cCCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHH----HHHHH------------------
Q 024997           61 AKSIYDHAY--FWPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEA----VYQRM------------------  115 (259)
Q Consensus        61 ~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~----~~~~~------------------  115 (259)
                      ++||+||+|  |...+.++. ...+++|+++||||.||++|||+||+++++..    +++.+                  
T Consensus       277 l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~  356 (527)
T PRK09275        277 LMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTD  356 (527)
T ss_pred             cEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCC
Confidence            999999999  432222322 24578999999999999999999999999522    33322                  


Q ss_pred             --------------HHhhhhhcCCCCHHHHHHHH-----HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 024997          116 --------------SAYISLNTMGVSRECQLRAF-----KLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSL  176 (259)
Q Consensus       116 --------------~~~~~~~~~~~~~~~q~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  176 (259)
                                    +......+.|.++++|.+++     ++++     ..+.+..+.++.+++|++.+.+.|. ..    
T Consensus       357 p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~-----~~~~~~~~~~~~~~~Rr~~l~~~Lg-~~----  426 (527)
T PRK09275        357 PEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLD-----EEDAYKKAMKDIIRRRYKALYEGLG-LP----  426 (527)
T ss_pred             cchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHHcC-CC----
Confidence                          45555677899999999732     3344     2556788899999999998877772 11    


Q ss_pred             ccccccccccceeeCCCCCeeEEEecCCC------------------chHHHHHHHHHcCeeeecCCcccCCCCeEEEEe
Q 024997          177 QEIAPQYCTYFKKIRPPSPAYAWVKCERE------------------EDKDCYGILKAAKIIGREGKKFRAEARFVRLSL  238 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~  238 (259)
                                +...+|.+++|+|+++...                  +.+++.++++++||.+.||..|+.+++++|+|+
T Consensus       427 ----------~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis~  496 (527)
T PRK09275        427 ----------EPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVLLPGGGFGGPEWSVRVSL  496 (527)
T ss_pred             ----------CcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEEeCchhhCCCCCeEEEEE
Confidence                      2234789999999998531                  357788999999999999999997678999999


Q ss_pred             ec-ChhhHHHHHHHHHHHhhh
Q 024997          239 LK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       239 ~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      +. +++++.++.+||++++.+
T Consensus       497 a~~~~~~~~~~~~rl~~~l~~  517 (527)
T PRK09275        497 ANLNEEDYAKIGKAIRKLLDE  517 (527)
T ss_pred             ecCCHHHHHHHHHHHHHHHHH
Confidence            96 889999999999998753

>PRK05957 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-37  Score=270.73  Aligned_cols=240  Identities=15%  Similarity=0.190  Sum_probs=198.1

Q ss_pred             CCCcccchhhhhhccCcc------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEee
Q 024997            1 MPFYPLYQEQTDYFESVD------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIYD   66 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~D   66 (259)
                      +|+|+.|...++..|.++      ..|.+|+++|++.++++++++++++||||||.+++        ++|+++|+++|+|
T Consensus       120 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~D  199 (389)
T PRK05957        120 TPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISD  199 (389)
T ss_pred             CCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEe
Confidence            599999999888888765      24678999999999888999999999999999883        7899999999999


Q ss_pred             ccc--c--CC-CCCC---CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 024997           67 HAY--F--WP-HFAP---IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLL  138 (259)
Q Consensus        67 e~y--~--~~-~~~~---~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l  138 (259)
                      |+|  |  .. ...+   +.+..+++|+++||||.||++|+|+||++++ +++++++.........+++.+.|.++..++
T Consensus       200 e~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l  278 (389)
T PRK05957        200 EAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIP-IHLLEAIKKIQDTILICPPVVSQYAALGAL  278 (389)
T ss_pred             ccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecC-HHHHHHHHHHHhhcccCCCcHHHHHHHHHH
Confidence            999  3  21 1112   2234568999999999999999999999999 699999998887666788889999999999


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHH
Q 024997          139 KVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKA  216 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~  216 (259)
                      +.     ...++++.++.++++++.+.+.|+.++++            +.+.++++|+|+|++++..  +.+++..++++
T Consensus       279 ~~-----~~~~~~~~~~~~~~~r~~l~~~L~~~~~~------------~~~~~~~gg~~~~~~~~~~~~~~~~~~~l~~~  341 (389)
T PRK05957        279 QV-----GKSYCQQHLPEIAQVRQILLKSLGQLQDR------------CTLHPANGAFYCFLKVNTDLNDFELVKQLIRE  341 (389)
T ss_pred             hC-----ChHHHHHHHHHHHHHHHHHHHHHHhcCCC------------ccccCCCeeEEEEEeCCCCCChHHHHHHHHHH
Confidence            73     45678888899999999999999876431            2345788999999998642  34677777778


Q ss_pred             cCeeeecCCcccCC-CCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          217 AKIIGREGKKFRAE-ARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       217 ~gi~~~~g~~f~~~-~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      +||.++||+.|+.+ .+++|||++. +++++++++++|.+.+++
T Consensus       342 ~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~~~  385 (389)
T PRK05957        342 YRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGLKT  385 (389)
T ss_pred             CCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            99999999999753 5799999986 889999999999988764

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=100.00  E-value=1.4e-37  Score=271.23  Aligned_cols=234  Identities=15%  Similarity=0.212  Sum_probs=191.4

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        +|.+|.+++++.+.+++++++++|||||||.+++        ++|+++|++||
T Consensus       123 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii  202 (393)
T TIGR03538       123 NPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIA  202 (393)
T ss_pred             CCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEE
Confidence            5999999999998887652        3677888888887778899999999999999993        78899999999


Q ss_pred             eeccc--c--CC--CCCCC----C----CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHH
Q 024997           65 YDHAY--F--WP--HFAPI----P----APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSREC  130 (259)
Q Consensus        65 ~De~y--~--~~--~~~~~----~----~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (259)
                      +||+|  |  ..  ...+.    .    ...+++|+++||||.|+++|+|+||++++ +++++.+.++......+++.+.
T Consensus       203 ~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~-~~l~~~~~~~~~~~~~~~~~~~  281 (393)
T TIGR03538       203 SDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGD-AEILKAFLRYRTYHGCAMPIPT  281 (393)
T ss_pred             ECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecC-HHHHHHHHHHHHhhccCcCHHH
Confidence            99999  2  21  11111    1    13468999999999999999999999999 7999999888776667889999


Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHH
Q 024997          131 QLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDC  210 (259)
Q Consensus       131 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (259)
                      |.++...+.      .++++.+.++.++++++.+.+.|+.+               +.+..|.+|+|+|++++..+.++.
T Consensus       282 q~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~L~~~---------------~~~~~p~gg~f~~~~~~~~~~~~~  340 (393)
T TIGR03538       282 QLASIAAWN------DEQHVRENRALYREKFAAVLEILGQV---------------LDLELPDAGFYLWPKVPGDDEAFA  340 (393)
T ss_pred             HHHHHHHhc------ChHHHHHHHHHHHHHHHHHHHHHHhh---------------CcccCCCeeEEEEEECCCCHHHHH
Confidence            999877775      34678888999999999999999853               123478999999999983245666


Q ss_pred             HHHHHHcCeeeecCCcccC-------CCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          211 YGILKAAKIIGREGKKFRA-------EARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       211 ~~ll~~~gi~~~~g~~f~~-------~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      ..+++++||.+.||+.|+.       +.+++|||++.+++++++++++|++++
T Consensus       341 ~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~~~~~l~~~l~~l~~~~  393 (393)
T TIGR03538       341 RALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVAPLEECVEAAERIRSFI  393 (393)
T ss_pred             HHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecCCHHHHHHHHHHHHHhC
Confidence            6777789999999998852       357999999888999999999998864

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=1.3e-37  Score=272.39  Aligned_cols=240  Identities=15%  Similarity=0.164  Sum_probs=188.6

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++        .+|.+|+++|++.+.+++++++++|||||||.+++        ++|+++|++||
T Consensus       128 ~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii  207 (409)
T PLN00143        128 RPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVI  207 (409)
T ss_pred             CCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEE
Confidence            599999999999988765        24678999999888888889999999999999983        78899999999


Q ss_pred             eeccc--c--CC-CCCCCC--CCCCCeEEEeccccccCCCcceEEEEEec-CHHHH------HHHHHhhhhhcCCCCHHH
Q 024997           65 YDHAY--F--WP-HFAPIP--APADEELMIFTISKLTGHAGSRFGWAVIK-DEAVY------QRMSAYISLNTMGVSREC  130 (259)
Q Consensus        65 ~De~y--~--~~-~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~-~~~~~------~~~~~~~~~~~~~~~~~~  130 (259)
                      +||+|  |  .. ...++.  ...+++|+++||||.|+++|+|+||++++ ++.++      +.+...... ...++.+.
T Consensus       208 ~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~  286 (409)
T PLN00143        208 ADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNP-APFPPTFI  286 (409)
T ss_pred             EEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhc-cCCCCchH
Confidence            99999  2  22 122222  33457999999999999999999999984 23443      333333322 23457899


Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC------
Q 024997          131 QLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER------  204 (259)
Q Consensus       131 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  204 (259)
                      |.++.++++.    ..+.++++.++.++++++.+.+.|++++..            .....|++|+|+|++++.      
T Consensus       287 q~a~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~------------~~~~~p~gg~f~w~~l~~~~~~~~  350 (409)
T PLN00143        287 QAAIPEILEK----TTEDFFSKTINILRAALAFCYDKLKEIPCI------------MCPQKAEGAFFALVKLNLLLLEDI  350 (409)
T ss_pred             HHHHHHHHhc----ChHHHHHHHHHHHHHHHHHHHHHHhcCCCC------------CCCCCCCeeEEEEEecchhhcCCC
Confidence            9999999873    135688889999999999999988865421            112368899999999963      


Q ss_pred             -CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          205 -EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       205 -~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                       .+.+++..+++++||.++||..|+. ++++||+++.+.++++++++||++++++
T Consensus       351 ~~~~~~~~~ll~~~gV~v~pg~~f~~-~~~iRi~~~~~~~~l~~al~rl~~~l~~  404 (409)
T PLN00143        351 EDDMEFCLKLAKEESLIILPGVTVGL-KNWLRITFAVEQSSLEDGLGRLKSFCGR  404 (409)
T ss_pred             CCHHHHHHHHHHhCCEEEeCccccCC-CCeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence             1346677888899999999999975 5899999998899999999999998863

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=1.5e-37  Score=273.11  Aligned_cols=239  Identities=17%  Similarity=0.237  Sum_probs=192.6

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...+...|..+        .+|.+|++.|++.+++++++++++|||||||.+++        ++|+++|++||
T Consensus       148 ~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii  227 (430)
T PLN00145        148 RPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVI  227 (430)
T ss_pred             CCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            599999999998888765        24788999999988888999999999999999993        67899999999


Q ss_pred             eeccc----cCC-CCCCCC--CCCCCeEEEeccccccCCCcceEEEEEec-CHHHHH------HHHHhhhhhcCCCCHHH
Q 024997           65 YDHAY----FWP-HFAPIP--APADEELMIFTISKLTGHAGSRFGWAVIK-DEAVYQ------RMSAYISLNTMGVSREC  130 (259)
Q Consensus        65 ~De~y----~~~-~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~-~~~~~~------~~~~~~~~~~~~~~~~~  130 (259)
                      +||+|    |.. .+.++.  ...+++|+++||||.|++||||+||++++ ++.+++      .+..+.. ...+++.+.
T Consensus       228 ~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  306 (430)
T PLN00145        228 ADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLN-ISTDPATFV  306 (430)
T ss_pred             EeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhc-ccCCCCHHH
Confidence            99999    221 223322  23467999999999999999999999984 234433      3333332 344678899


Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccee-eCCCCCeeEEEecCC-----
Q 024997          131 QLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKK-IRPPSPAYAWVKCER-----  204 (259)
Q Consensus       131 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----  204 (259)
                      |.++..+++.    ..++++++.++.++++++.+.+.|+.+++             +.+ ..|++++|+|++++.     
T Consensus       307 Q~a~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~L~~~~g-------------~~~~~~P~ga~y~~v~l~~~~~~~  369 (430)
T PLN00145        307 QGAIPQIIAN----TKEEFFTKTLGLLKETADICYEKIKEIKC-------------ITCPHKPEGSMFVMVKLDLSCLSG  369 (430)
T ss_pred             HHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------CCCCcCCCeeeEEEeccChhhcCC
Confidence            9999999984    23578899999999999999999987643             333 368999999999863     


Q ss_pred             --CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          205 --EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       205 --~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                        .+.+++..+++++||.+.||..|+. ++++|||++.+.+.+++++++|++++.+
T Consensus       370 ~~~~~~~~~~ll~~~gV~v~pG~~fg~-~~~lRis~~~~~~~l~~al~rl~~~~~~  424 (430)
T PLN00145        370 IKDDMDFCCKLAKEESVVVLPGSALGM-KNWLRITFAIDPPSLEDGLERLKSFCLR  424 (430)
T ss_pred             CCCHHHHHHHHHHhCCEEEeCccccCC-CCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence              1346788899999999999999985 5899999988889999999999999864

>PRK09148 aminotransferase; Validated

Probab=100.00  E-value=2.1e-37  Score=270.77  Aligned_cols=237  Identities=19%  Similarity=0.205  Sum_probs=192.5

Q ss_pred             CCCcccchhhhhhccCcccccccC-----hhhhcccC---CCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEGE-----ANLWGNAS---SDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~d-----~~~l~~~~---~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++..+..+     .+.+++.+   .++++++++++||||||.+++        ++|+++|++||
T Consensus       123 ~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii  202 (405)
T PRK09148        123 NPSYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIIL  202 (405)
T ss_pred             CCCCcccHHHHHhcCCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEE
Confidence            699999999999998876443322     23344443   367899999999999999993        78899999999


Q ss_pred             eeccc----cCC-CCCCC---CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 024997           65 YDHAY----FWP-HFAPI---PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFK  136 (259)
Q Consensus        65 ~De~y----~~~-~~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~  136 (259)
                      +||+|    |.. ...++   +...+++++++||||.+|++|+|+||++++ +++++.+.+.......+++.+.|.++..
T Consensus       203 ~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~-~~~i~~l~~~~~~~~~~~~~~~q~~~~~  281 (405)
T PRK09148        203 SDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGN-ERLIAALTRVKSYLDYGAFTPIQVAATA  281 (405)
T ss_pred             EeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeCC-HHHHHHHHHHHHHhccCCChHHHHHHHH
Confidence            99999    222 12222   223457889999999999999999999998 7999999988877778889999999999


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-----chHHHH
Q 024997          137 LLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-----EDKDCY  211 (259)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  211 (259)
                      +++.     .+.++++.++.++++++.+.+.|+.++              +.+..|++|+|+|++++..     +.++..
T Consensus       282 ~L~~-----~~~~~~~~~~~~~~~r~~l~~~L~~~~--------------~~~~~p~~g~f~~~~l~~~~~~~~~~~~~~  342 (405)
T PRK09148        282 ALNG-----PQDCIAEMRELYKKRRDVLVESFGRAG--------------WDIPPPAASMFAWAPIPEAFRHLGSLEFSK  342 (405)
T ss_pred             HHhC-----cHHHHHHHHHHHHHHHHHHHHHHHHcC--------------CccCCCCeeEEEEEECCCccCCCCHHHHHH
Confidence            9973     457888899999999999999998754              4445788999999998752     246667


Q ss_pred             HHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          212 GILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       212 ~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      .+++++||.++||..|+. +++++||+++.+.+++.+++++|.++++
T Consensus       343 ~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~~~~~l~~al~~l~~~l~  389 (405)
T PRK09148        343 LLVEKADVAVAPGVGFGEHGDGYVRIALVENEQRIRQAARNIKRFLS  389 (405)
T ss_pred             HHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence            778789999999999975 3689999998888999999999999875

>PRK06107 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.8e-37  Score=271.12  Aligned_cols=238  Identities=17%  Similarity=0.216  Sum_probs=197.9

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCC-CcEE
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGP-YAKS   63 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~-~~~v   63 (259)
                      +|+|+.|.......+...        .+|.+|++.|++.+.++++++++++||||||.+++        ++|+++ |+++
T Consensus       124 ~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~i  203 (402)
T PRK06107        124 APYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLV  203 (402)
T ss_pred             cCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEE
Confidence            589999998888776543        23667888899988888899899999999999983        778887 9999


Q ss_pred             Eeeccc----cCC-CCCCCC----CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHH
Q 024997           64 IYDHAY----FWP-HFAPIP----APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRA  134 (259)
Q Consensus        64 i~De~y----~~~-~~~~~~----~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  134 (259)
                      |+||+|    |.. ...++.    +..+++++++||||.||++|+|+||++++ +++++.+.........+++.+.|.++
T Consensus       204 I~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~-~~~~~~~~~~~~~~~~~~s~~~q~~~  282 (402)
T PRK06107        204 LTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGP-ADLIAAINKLQSQSSSCPSSISQAAA  282 (402)
T ss_pred             EEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecC-HHHHHHHHHHHHhcccCCChHHHHHH
Confidence            999999    222 222222    23468999999999999999999999999 79999999988877789999999999


Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC----------
Q 024997          135 FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER----------  204 (259)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  204 (259)
                      ..+++.     .+.++.+.++.++++++.+.+.|+++++             +.+..|++|+|+|++++.          
T Consensus       283 ~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~L~~~~g-------------~~~~~p~gg~~~~~~~~~~~~~~~~~~~  344 (402)
T PRK06107        283 AAALNG-----DQSFVTESVAVYKQRRDYALALLNAIPG-------------LSCLVPDGAFYLYVNCAGLIGKTTPEGK  344 (402)
T ss_pred             HHHhcC-----ChHHHHHHHHHHHHHHHHHHHHHhcCCC-------------CcccCCCcceEEeeeccccccccccccc
Confidence            999973     4678899999999999999999987543             445688999999998731          


Q ss_pred             ---CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          205 ---EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       205 ---~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                         .+.+++.++++++||.++||+.|+. .+++|||++.+++++++++++|.+++.+
T Consensus       345 ~~~~~~~~~~~l~~~~gv~v~pg~~Fg~-~~~iRis~~~~~e~l~~~l~~l~~~l~~  400 (402)
T PRK06107        345 VLETDQDVVLYLLDSAGVAVVQGTAYGL-SPYFRLSIATSLETLEEACARIERAVAA  400 (402)
T ss_pred             CCCCHHHHHHHHHHhCCEEEeCccccCC-CCeEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence               1245677888889999999999976 4899999999999999999999998754

>PRK07683 aminotransferase A; Validated

Probab=100.00  E-value=2.6e-37  Score=268.87  Aligned_cols=238  Identities=19%  Similarity=0.235  Sum_probs=197.3

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEe
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIY   65 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~   65 (259)
                      +|+|+.|...++..|.++.       +|.+|.+.+++.++++++++++++||||||.+++        ++|+++|+++|+
T Consensus       120 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~  199 (387)
T PRK07683        120 APIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLS  199 (387)
T ss_pred             CCCccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence            5999999999999988762       3556677888888788899999999999999972        788999999999


Q ss_pred             eccc--c--CCCCCCCC---CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 024997           66 DHAY--F--WPHFAPIP---APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLL  138 (259)
Q Consensus        66 De~y--~--~~~~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l  138 (259)
                      ||+|  |  .+...++.   +..+++++++||||.||++|+|+||++++ +++++++.........+++.+.|.++..++
T Consensus       200 De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l  278 (387)
T PRK07683        200 DEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAP-SYLAKHILKVHQYNVTCASSISQYAALEAL  278 (387)
T ss_pred             ecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcC-HHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            9999  2  22222222   34568999999999999999999999999 799999988766555677889999999999


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC--C-chHHHHHHHH
Q 024997          139 KVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--E-EDKDCYGILK  215 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~ll~  215 (259)
                      ++     .+.++++.++.++++++.+.+.|+..+              +.+..+++|+|+|+.++.  . +.+++.++++
T Consensus       279 ~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  339 (387)
T PRK07683        279 TA-----GKDDAKMMRHQYKKRRDYVYNRLISMG--------------LDVEKPTGAFYLFPSIGHFTMSSFDFALDLVE  339 (387)
T ss_pred             hC-----ChHHHHHHHHHHHHHHHHHHHHHHHcC--------------CcccCCCeeEEEEEecccCCCCHHHHHHHHHH
Confidence            73     456788889999999999999998653              455688999999998864  2 3466677888


Q ss_pred             HcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          216 AAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       216 ~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ++||.++||+.|+. +++++||+++.+++++++++++|.+++.+
T Consensus       340 ~~gI~v~pg~~f~~~~~~~~Ri~~~~~~~~~~~al~~l~~~l~~  383 (387)
T PRK07683        340 EAGLAVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRLEAFLQQ  383 (387)
T ss_pred             hCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            89999999999975 46899999988999999999999998764

>PRK06855 aminotransferase; Validated

Probab=100.00  E-value=1.1e-37  Score=274.51  Aligned_cols=241  Identities=17%  Similarity=0.165  Sum_probs=186.0

Q ss_pred             CCCcccchhhh-hhccCcc--------cccccChhhhcccCC--CCceEEEEcCCCCCChhhHH--------HhhcCCCc
Q 024997            1 MPFYPLYQEQT-DYFESVD--------YKFEGEANLWGNASS--DTHLVEFVTAPNNPDGQMNK--------AVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~-~~~g~~~--------~~~~~d~~~l~~~~~--~~~~~i~i~~p~NPtG~~~~--------~la~~~~~   61 (259)
                      +|+|+.|.... ...|...        .+|.+|+++|++.+.  +++++++++|||||||.+++        ++|+++|+
T Consensus       126 ~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~  205 (433)
T PRK06855        126 SPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDL  205 (433)
T ss_pred             CCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence            59999987653 3345432        347889999999885  46788899999999999993        78899999


Q ss_pred             EEEeeccc----cCC-CCCCCCC--CCCCeEEEeccccccCCCcceEEEEEecC----HH---HHHHHHHhhhhhcCCCC
Q 024997           62 KSIYDHAY----FWP-HFAPIPA--PADEELMIFTISKLTGHAGSRFGWAVIKD----EA---VYQRMSAYISLNTMGVS  127 (259)
Q Consensus        62 ~vi~De~y----~~~-~~~~~~~--~~~~~i~~~S~SK~~g~~G~R~G~i~~~~----~~---~~~~~~~~~~~~~~~~~  127 (259)
                      +||+||+|    |.. ...++..  ...++|+++||||.|+++|+|+||+++++    +.   +++.+..... ...+++
T Consensus       206 ~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~-~~~~~~  284 (433)
T PRK06855        206 FIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKM-IEVCST  284 (433)
T ss_pred             EEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhhc-cccCCC
Confidence            99999999    222 2223221  12368999999999999999999999842    22   3333333322 235678


Q ss_pred             HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--
Q 024997          128 RECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--  205 (259)
Q Consensus       128 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  205 (259)
                      .+.|.++..++++   +..++++++.++.++++++.+.+.|+.+++             +.+..|++|+|+|++++..  
T Consensus       285 ~~~Q~a~~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~-------------~~~~~p~gg~~~w~~l~~~~~  348 (433)
T PRK06855        285 TLPQMAIPRIMSH---PEYKNYLKERNKRYEKRSNIAYEKLKDVPG-------------LKVNRTNGAFYMTVVFEDGVL  348 (433)
T ss_pred             hHHHHHHHHhhcC---CcHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------eeccCCCeeEEEeeccccccc
Confidence            9999999999973   123678999999999999999999986532             4456899999999999742  


Q ss_pred             ---------------------------chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHhh
Q 024997          206 ---------------------------EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       206 ---------------------------~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l~  257 (259)
                                                 +.+++..+++++||.+.||+.|+....++|||++. +.+++++++++|.++++
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~~~~~~i~~~~~~l~~~~~  428 (433)
T PRK06855        349 NNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLERDEEKFEWIYQTLAEKIE  428 (433)
T ss_pred             cccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECCCcHHHHHHHHHHHHHHHH
Confidence                                       34667778889999999999998655679999987 89999999999999886


Q ss_pred             h
Q 024997          258 K  258 (259)
Q Consensus       258 ~  258 (259)
                      +
T Consensus       429 ~  429 (433)
T PRK06855        429 E  429 (433)
T ss_pred             H
Confidence            4

>PRK05942 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.7e-37  Score=270.75  Aligned_cols=235  Identities=18%  Similarity=0.228  Sum_probs=194.7

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...+...|.++.        +|.+|+++|++.+.+++++++++|||||||.+++        ++|+++|++||
T Consensus       128 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI  207 (394)
T PRK05942        128 SPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLV  207 (394)
T ss_pred             CCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhccccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEE
Confidence            6999999998888887642        3568888998888889999999999999999983        78999999999


Q ss_pred             eeccc--c--CC-CCCCC---CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 024997           65 YDHAY--F--WP-HFAPI---PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFK  136 (259)
Q Consensus        65 ~De~y--~--~~-~~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~  136 (259)
                      +||+|  |  .+ ...++   ....+++|+++||||.||++|+|+||++++ +++++.+.........+++.+.|.++..
T Consensus       208 ~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~-~~l~~~l~~~~~~~~~~~~~~~q~~~~~  286 (394)
T PRK05942        208 HDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGN-RHIIQGLRTLKTNLDYGIFSALQKAAET  286 (394)
T ss_pred             EeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecC-HHHHHHHHHHHhhcccCCCHHHHHHHHH
Confidence            99999  2  21 12222   223456899999999999999999999998 7999999988776667889999999999


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHH
Q 024997          137 LLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGIL  214 (259)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll  214 (259)
                      +++.     .+.++.+.++.++++++.+.+.|+.++              +.+..+++|+|+|++++..  +.++..+++
T Consensus       287 ~l~~-----~~~~~~~~~~~~~~~~~~~~~~L~~~~--------------~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l  347 (394)
T PRK05942        287 ALQL-----PDSYLQQVQERYRTRRDFLIQGLGELG--------------WNIPPTKATMYLWVPCPVGMGSTDFALNVL  347 (394)
T ss_pred             HHhC-----cHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CeecCCCeeeEEEEECCCCCCHHHHHHHHH
Confidence            9972     456888899999999999999998653              4455788999999999753  356666788


Q ss_pred             HHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHH
Q 024997          215 KAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDEL  255 (259)
Q Consensus       215 ~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~  255 (259)
                      +++||.++||+.|+. +.+++|+|++.+.+.+.+++++|.++
T Consensus       348 ~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~  389 (394)
T PRK05942        348 QKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGEALDRLKQA  389 (394)
T ss_pred             HHCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHHh
Confidence            889999999999975 46899999987888899999998764

>PRK08912 hypothetical protein; Provisional

Probab=100.00  E-value=2e-37  Score=269.79  Aligned_cols=238  Identities=16%  Similarity=0.185  Sum_probs=197.4

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEe
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIY   65 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~   65 (259)
                      +|+|+.|...++..|.++.       .|.+|++.|++.+++++++++++|||||||.+++        ++|+++|+++|+
T Consensus       118 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~  197 (387)
T PRK08912        118 QPLYDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAIC  197 (387)
T ss_pred             CCCchhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhCccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEE
Confidence            5999999999999888652       4678889999988888899999999999999983        788999999999


Q ss_pred             eccc----cCC-CCCCC---CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Q 024997           66 DHAY----FWP-HFAPI---PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKL  137 (259)
Q Consensus        66 De~y----~~~-~~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  137 (259)
                      ||+|    |.. ...++   .+..+++++++||||.||++|+|+||++++ +++++.+........++++++.|.++..+
T Consensus       198 De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~~~~~~  276 (387)
T PRK08912        198 DEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAA-PPLLRVLAKAHQFLTFTTPPNLQAAVAYG  276 (387)
T ss_pred             hhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecC-HHHHHHHHHHHhhccccCChHHHHHHHHH
Confidence            9999    222 22222   233578999999999999999999999999 69999998877766677788889988888


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC----C-chHHHHH
Q 024997          138 LKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER----E-EDKDCYG  212 (259)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~  212 (259)
                      +..     .++++++.++.++++++.+.+.|+.++              +.+.++++++|+|++++.    . +.+++..
T Consensus       277 l~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~g~~~l~~~l~~~~~~~~~~~~~~~  337 (387)
T PRK08912        277 LGK-----PDDYFEGMRADLARSRDRLAAGLRRIG--------------FPVLPSQGTYFLTVDLAPLGLAEDDVAFCRR  337 (387)
T ss_pred             HhC-----CHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CcccCCCcceEEEecccccCCCCCHHHHHHH
Confidence            862     456888899999999999999998764              445578899999999864    2 3456667


Q ss_pred             HHHHcCeeeecCCcccC---CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          213 ILKAAKIIGREGKKFRA---EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       213 ll~~~gi~~~~g~~f~~---~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +++++||.+.||..|+.   ..+++||+++.+++++++++++|.+++.+
T Consensus       338 l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~~~~~l~~~l~rl~~~l~~  386 (387)
T PRK08912        338 LVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLDEAVERLAAARRR  386 (387)
T ss_pred             HHhcCCEEEecchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            77788999999999863   36899999998889999999999998875

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.3e-37  Score=253.33  Aligned_cols=239  Identities=19%  Similarity=0.260  Sum_probs=207.1

Q ss_pred             CCcccchhhhhhccCcc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEe
Q 024997            2 PFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIY   65 (259)
Q Consensus         2 P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~   65 (259)
                      |+||.|...+...|.++        .+|++|++.++.+++++|.+++++|||||+|.+++        ++|++++++||.
T Consensus       158 PGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIa  237 (447)
T KOG0259|consen  158 PGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIA  237 (447)
T ss_pred             CCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence            99999999999888876        46899999999999999999999999999999993        889999999999


Q ss_pred             eccc----c-CCCCCCCC--CCCCCeEEEeccccccCCCcceEEEEEecCH-------HHHHHHHHhhhhhcCCCCHHHH
Q 024997           66 DHAY----F-WPHFAPIP--APADEELMIFTISKLTGHAGSRFGWAVIKDE-------AVYQRMSAYISLNTMGVSRECQ  131 (259)
Q Consensus        66 De~y----~-~~~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~q  131 (259)
                      ||+|    | +..+.++.  ...-.++.++|+||.|=.||||+||++..|.       .+++.+.+... .+.+++++.|
T Consensus       238 DEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~-~~~~p~TiiQ  316 (447)
T KOG0259|consen  238 DEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLD-IIPGPATIIQ  316 (447)
T ss_pred             hhhcceeecCCCCccchhhccccCceEeecccccccccCCceeeeEEEecccccccchHHHHHHHHHHh-ccCCccHhHH
Confidence            9999    5 34455554  2334589999999999999999999998752       34455665554 4688999999


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC------
Q 024997          132 LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE------  205 (259)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  205 (259)
                      .|...+|+.    ..+++++...+.++.+.+.-.+.|++++++++            ...|+|.+|+|+++.-.      
T Consensus       317 ~AlP~IL~k----Tp~efF~k~~~~lk~na~l~y~~Lk~IP~l~c------------p~kPeg~mylmv~l~~s~~~~~~  380 (447)
T KOG0259|consen  317 GALPDILEK----TPEEFFDKKLSFLKSNADLCYSRLKDIPCLTC------------PVKPEGCMYLMVKLNLSLFPDIE  380 (447)
T ss_pred             HHhHHHHHh----ChHHHHHHHHHHHHhhHHHHHHHHhcCCCccc------------CcCCCcceEEEeccchhhhcccc
Confidence            999999987    47889999999999999999999999987443            34899999999987643      


Q ss_pred             -chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          206 -EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       206 -~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                       +.+++.++.+++.+.+.||..|+.+ +|+|++++.+.+.++++++||++++.+
T Consensus       381 dD~dFc~kL~~Eesv~~LPG~af~~~-nw~Ri~i~~~~~~leea~~Rik~Fc~R  433 (447)
T KOG0259|consen  381 DDVDFCQKLAREESVICLPGQAFGLK-NWLRIVITVEEEMLEEAFSRIKEFCDR  433 (447)
T ss_pred             ccHHHHHHHhhhcceEEeccccccCC-CeEEEEEccChHHHHHHHHHHHHHHHh
Confidence             5799999999999999999999986 999999988999999999999999875

>PRK06108 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.3e-37  Score=267.98  Aligned_cols=239  Identities=18%  Similarity=0.246  Sum_probs=197.7

Q ss_pred             CCCcccchhhhhhccCccc---------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEE
Q 024997            1 MPFYPLYQEQTDYFESVDY---------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKS   63 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~---------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~v   63 (259)
                      +|+|+.|...++..|.++.         +|.+|++.|++.++++++++++++||||||.+++        ++|+++|+++
T Consensus       115 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~l  194 (382)
T PRK06108        115 TPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWI  194 (382)
T ss_pred             CCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEE
Confidence            5999999999998887652         2557888999888888899999999999999872        7889999999


Q ss_pred             Eeeccc--c--C-C-CCCC---CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHH
Q 024997           64 IYDHAY--F--W-P-HFAP---IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRA  134 (259)
Q Consensus        64 i~De~y--~--~-~-~~~~---~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  134 (259)
                      |+||+|  |  . . ...+   +....+++++++||||.||++|+|+||++++ +++++.+.........+++.+.|.++
T Consensus       195 i~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~a~  273 (382)
T PRK06108        195 VADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAP-PALGQVLEKLIEYNTSCVAQFVQRAA  273 (382)
T ss_pred             EEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCC-HHHHHHHHHHHHhcccCCChHHHHHH
Confidence            999999  2  2 1 1111   2123468999999999999999999999999 79999998877656678899999999


Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHH
Q 024997          135 FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYG  212 (259)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  212 (259)
                      ..+++.     .+.++++.+++++++++.+.+.|+.+++             +.+..|++|+|+|++++..  +.++...
T Consensus       274 ~~~l~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------------~~~~~p~~g~~~~~~l~~~~~~~~~~~~  335 (382)
T PRK06108        274 VAALDE-----GEDFVAELVARLRRSRDHLVDALRALPG-------------VEVAKPDGAMYAFFRIPGVTDSLALAKR  335 (382)
T ss_pred             HHHHhC-----ChHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CcccCCCeeEEEEEeCCCCCCHHHHHHH
Confidence            999973     4567888899999999999999987643             4455788999999998753  3456677


Q ss_pred             HHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          213 ILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       213 ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +++++||.++||..|+. +.+++|||++.+++++++++++|++++++
T Consensus       336 ll~~~gV~v~pg~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~  382 (382)
T PRK06108        336 LVDEAGLGLAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRFLAR  382 (382)
T ss_pred             HHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhC
Confidence            77889999999999974 46899999988999999999999998864

>PRK07337 aminotransferase; Validated

Probab=100.00  E-value=2.9e-37  Score=268.84  Aligned_cols=237  Identities=20%  Similarity=0.264  Sum_probs=194.1

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.+...++..|.++        ..|.+|+++|++.++++++++++++||||||.+++        ++|+++|+++|
T Consensus       121 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii  200 (388)
T PRK07337        121 DPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTI  200 (388)
T ss_pred             CCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEE
Confidence            599999999888887654        24678889999988888899999999999999983        77889999999


Q ss_pred             eeccc--c--CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q 024997           65 YDHAY--F--WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKV  140 (259)
Q Consensus        65 ~De~y--~--~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  140 (259)
                      +||+|  |  .+...+.....+++++++||||.||++|+|+||++++ +++++.+.+.......+++.+.|.++..+++.
T Consensus       201 ~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~~-~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  279 (388)
T PRK07337        201 VDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNMTGWRLGWLVVP-EALVGTFEKLAQNLFICASALAQHAALACFEP  279 (388)
T ss_pred             EeccccccccCCCCcChhhccCCEEEEEechhhcCCchhheeeeecC-HHHHHHHHHHHHHhccCCChHHHHHHHHHhcc
Confidence            99999  2  2222222234567999999999999999999999999 69999999888776778899999998888863


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccee-eCCCCCeeEEEecCC------C-chHHHHH
Q 024997          141 VLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKK-IRPPSPAYAWVKCER------E-EDKDCYG  212 (259)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~-~~~~~~~  212 (259)
                          ....+..+.++.++++++.+.+.|+.++              +.. ..|++|+|+|++++.      . +.+++..
T Consensus       280 ----~~~~~~~~~~~~~~~~r~~~~~~L~~~~--------------~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~  341 (388)
T PRK07337        280 ----DTLAIYERRRAEFKRRRDFIVPALESLG--------------FKVPVMPDGAFYVYADCRGVAHPAAGDSAALTQA  341 (388)
T ss_pred             ----CchHHHHHHHHHHHHHHHHHHHHHHhcC--------------CccccCCCeeEEEEEecccccCCCCCCHHHHHHH
Confidence                1234567788899999999999998754              222 367899999999974      2 3456667


Q ss_pred             HHHHcCeeeecCCcccC--CCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          213 ILKAAKIIGREGKKFRA--EARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       213 ll~~~gi~~~~g~~f~~--~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      +++++||.+.||+.|+.  +.+++|||++.+.+++++++++|.+++
T Consensus       342 ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~~~~~l~~~l~rl~~~l  387 (388)
T PRK07337        342 MLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGKLF  387 (388)
T ss_pred             HHHhCCEEEeCchhhCCCCCCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence            78889999999999975  368999999888899999999999875

>PRK09082 methionine aminotransferase; Validated

Probab=100.00  E-value=1e-37  Score=271.38  Aligned_cols=234  Identities=18%  Similarity=0.231  Sum_probs=195.6

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHhhcCCCcEEEe
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVLKGPYAKSIY   65 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~vi~   65 (259)
                      +|+|+.|...++..|.++.       +|.+|++++++.++++++++++++||||||.++        .++|+++|+++|+
T Consensus       122 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~  201 (386)
T PRK09082        122 DPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLS  201 (386)
T ss_pred             CCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcCccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEE
Confidence            5999999999999887752       457788899998888899999999999999886        2889999999999


Q ss_pred             eccc----cCC-CCCCC---CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Q 024997           66 DHAY----FWP-HFAPI---PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKL  137 (259)
Q Consensus        66 De~y----~~~-~~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  137 (259)
                      ||+|    |.. ...++   .+..+++++++||||.||++|+|+||++++ +++++.+.+.......+++.+.|.++..+
T Consensus       202 De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~  280 (386)
T PRK09082        202 DEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAP-AALSAEFRKVHQYNTFTVNTPAQLALADY  280 (386)
T ss_pred             ehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCC-HHHHHHHHHHHhhhcCCCChHHHHHHHHH
Confidence            9999    222 12222   234578999999999999999999999999 69999999988766788999999999888


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC---C-chHHHHHH
Q 024997          138 LKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER---E-EDKDCYGI  213 (259)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~l  213 (259)
                      ++.     .+.++++.++.++++++.+.+.|+..+              +.+.++++|+|+|++++.   . +.++...+
T Consensus       281 l~~-----~~~~~~~~~~~~~~~~~~~~~~L~~~~--------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l  341 (386)
T PRK09082        281 LRA-----EPEHYLELPAFYQAKRDRFRAALANSR--------------FKLLPCEGTYFQLVDYSAISDLDDVEFCQWL  341 (386)
T ss_pred             HhC-----ChHHHHHHHHHHHHHHHHHHHHHHhCC--------------CcccCCCeeEEEEEeccccCCCCHHHHHHHH
Confidence            872     456788889999999999999998643              455678999999999863   2 34566667


Q ss_pred             HHHcCeeeecCCcccC---CCCeEEEEeecChhhHHHHHHHHHH
Q 024997          214 LKAAKIIGREGKKFRA---EARFVRLSLLKSQDDFDLLLHRLDE  254 (259)
Q Consensus       214 l~~~gi~~~~g~~f~~---~~~~~Ris~~~~~~~~~~~~~~l~~  254 (259)
                      ++++||.+.||+.|+.   +.+++|||++.+++++++++++|++
T Consensus       342 ~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~~~~~l~~~~~rl~~  385 (386)
T PRK09082        342 TREHGVAAIPLSVFYADPFPHRLVRLCFAKQEETLDAAAERLCQ  385 (386)
T ss_pred             HHhCCEEEeCcHHhCCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence            8899999999998863   3679999999889999999999975

>PLN02656 tyrosine transaminase

Probab=100.00  E-value=3.3e-37  Score=269.88  Aligned_cols=240  Identities=17%  Similarity=0.236  Sum_probs=194.6

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++        .+|.+|++.|++.++++++++++++||||||.++        .++|+++|++||
T Consensus       127 ~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii  206 (409)
T PLN02656        127 RPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVI  206 (409)
T ss_pred             CCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            599999999888888764        2467888999988888889999999999999997        278899999999


Q ss_pred             eeccc--c--CC-CCCCCC--CCCCCeEEEeccccccCCCcceEEEEEecC-------HHHHHHHHHhhhhhcCCCCHHH
Q 024997           65 YDHAY--F--WP-HFAPIP--APADEELMIFTISKLTGHAGSRFGWAVIKD-------EAVYQRMSAYISLNTMGVSREC  130 (259)
Q Consensus        65 ~De~y--~--~~-~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~-------~~~~~~~~~~~~~~~~~~~~~~  130 (259)
                      +||+|  |  .+ ...++.  +..+++|+++||||.|+++|+|+||+++++       +++++++...... ..+++.+.
T Consensus       207 ~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~  285 (409)
T PLN02656        207 ADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDI-LGGPATFI  285 (409)
T ss_pred             EehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHHHHhh-hcCCCHHH
Confidence            99999  2  22 222221  334679999999999999999999999952       5788888876553 35688999


Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-----
Q 024997          131 QLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-----  205 (259)
Q Consensus       131 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  205 (259)
                      |.++..+++.    ..+.++++.++.++++++.+.+.|+.++..            .....|++|+|+|++++..     
T Consensus       286 q~a~~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~------------~~~~~p~gg~~~w~~l~~~~~~~~  349 (409)
T PLN02656        286 QAAVPTILEQ----TDESFFKKTINILKQSSDICCDRIKEIPCI------------TCPHKPEGSMAVMVKLNLSLLEDI  349 (409)
T ss_pred             HHHHHHHHhc----CcHHHHHHHHHHHHHHHHHHHHHHhhCCCC------------cCCcCCCeEEEEEEecchhhcCCC
Confidence            9999999973    245688999999999999999999875421            1124789999999998521     


Q ss_pred             --chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          206 --EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       206 --~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                        +.+++..+++++||.++||+.|+. ++++||+++.+++++++++++|++++++
T Consensus       350 ~~~~~~~~~~l~~~gV~v~pg~~fg~-~~~iRi~~~~~~e~l~eal~rl~~~~~~  403 (409)
T PLN02656        350 SDDIDFCFKLAREESVIILPGTAVGL-KNWLRITFAADPSSLEEALGRIKSFYLR  403 (409)
T ss_pred             CCHHHHHHHHHHhCCEEEecchhcCC-CCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence              235677888899999999999975 5899999998999999999999998764

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=2.3e-37  Score=274.23  Aligned_cols=239  Identities=21%  Similarity=0.261  Sum_probs=188.0

Q ss_pred             CCCcccchhhhhh-ccCcc--------cccccChhhhcccCC------CCceEEEEcCCCCCChhhHH--------Hhhc
Q 024997            1 MPFYPLYQEQTDY-FESVD--------YKFEGEANLWGNASS------DTHLVEFVTAPNNPDGQMNK--------AVLK   57 (259)
Q Consensus         1 ~P~y~~~~~~~~~-~g~~~--------~~~~~d~~~l~~~~~------~~~~~i~i~~p~NPtG~~~~--------~la~   57 (259)
                      +|+|+.|...+.. .|.++        .+|.+|.+.+++.+.      .+++++++||||||||.+++        ++|+
T Consensus       142 ~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~  221 (468)
T PLN02450        142 TPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFIT  221 (468)
T ss_pred             CCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHH
Confidence            5999999888874 67654        245667788887763      37888999999999999993        7888


Q ss_pred             CCCcEEEeeccc----cCC-CCCCCC-----------CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhh
Q 024997           58 GPYAKSIYDHAY----FWP-HFAPIP-----------APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL  121 (259)
Q Consensus        58 ~~~~~vi~De~y----~~~-~~~~~~-----------~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~  121 (259)
                      ++|++||+||+|    |.. .+.++.           +..+++++++||||.||++|+|+||++++++.+.+.+..... 
T Consensus       222 ~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~-  300 (468)
T PLN02450        222 AKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSS-  300 (468)
T ss_pred             HCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHhh-
Confidence            999999999999    221 222211           135789999999999999999999999986456776665533 


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEE
Q 024997          122 NTMGVSRECQLRAFKLLKVVLEDGG-NNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWV  200 (259)
Q Consensus       122 ~~~~~~~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (259)
                       ..+++.+.|.++..+|++.   .. +.++++.+++++++++.+.+.|+.++              +.+.++++|+|+|+
T Consensus       301 -~~~~s~~~Q~a~~~~L~~~---~~~~~~l~~~~~~l~~rr~~l~~~L~~~g--------------i~~~~~~~g~flwi  362 (468)
T PLN02450        301 -FGLVSSQTQYLLSALLSDK---KFTKNYLEENQKRLKQRQKKLVSGLEAAG--------------IKCLKSNAGLFCWV  362 (468)
T ss_pred             -cCCCCHHHHHHHHHHhCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------CcccCCCceEEEEE
Confidence             2457899999999999731   11 13678889999999999999998764              44567899999999


Q ss_pred             ecCCC--------chHHHHHHHHHcCeeeecCCcccC-CCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          201 KCERE--------EDKDCYGILKAAKIIGREGKKFRA-EARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       201 ~~~~~--------~~~~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      +++..        ..++...+++++||.+.||+.|+. +++++||+|+. +++++++++++|++++++
T Consensus       363 ~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~~  430 (468)
T PLN02450        363 DMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLAMKRLKSFVES  430 (468)
T ss_pred             EchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence            98642        134566778889999999999975 47899999996 899999999999998764

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=100.00  E-value=4.7e-37  Score=263.96  Aligned_cols=234  Identities=17%  Similarity=0.211  Sum_probs=190.9

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        +|.+|+++++++++++++++++++||||||.+++        ++|+++|+++|
T Consensus        94 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii  173 (350)
T TIGR03537        94 TPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILC  173 (350)
T ss_pred             CCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEE
Confidence            5999999999999988762        3667888999888888999999999999999883        78899999999


Q ss_pred             eeccc--c--CCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q 024997           65 YDHAY--F--WPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLK  139 (259)
Q Consensus        65 ~De~y--~--~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~  139 (259)
                      +||+|  +  .....++. ...+++++++||||.+|++|+|+||++++ +++.+++.........+.+.+.|.++...+.
T Consensus       174 ~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~  252 (350)
T TIGR03537       174 SDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAGD-EKLISFLRKLRANFGVASPDFVQAAAKAAWS  252 (350)
T ss_pred             EeccccccccCCCCCchhhcCcCCEEEEeecccccCCccccceeeecC-HHHHHHHHHHHHhhccCCCHHHHHHHHHHhC
Confidence            99999  2  22222222 23468999999999999999999999988 7999999988776667777788888877776


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcC
Q 024997          140 VVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAK  218 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~g  218 (259)
                            .+.++.+.++.++++++.+.+.|+..+              +.+..+.+|+|+|++++.. +.+.+.+.|.++|
T Consensus       253 ------~~~~~~~~r~~l~~~~~~~~~~l~~~g--------------~~~~~~~g~~~~~~~~~~~~~~~~l~~~L~~~g  312 (350)
T TIGR03537       253 ------DDNHVLERRKIFKRKRDLFIEFFNKVG--------------LEYLYPDATFYLWVKVPSGIDAKDYALRLLENG  312 (350)
T ss_pred             ------CcHHHHHHHHHHHHHHHHHHHHHHHCC--------------CcccCCCeEEEEEEECCCCCCHHHHHHHHHHCC
Confidence                  356788889999999999999998753              4455788999999999764 3444445455689


Q ss_pred             eeeecCCcccCC-CCeEEEEeecChhhHHHHHHHHHHH
Q 024997          219 IIGREGKKFRAE-ARFVRLSLLKSQDDFDLLLHRLDEL  255 (259)
Q Consensus       219 i~~~~g~~f~~~-~~~~Ris~~~~~~~~~~~~~~l~~~  255 (259)
                      |.++||..|+.. .+++||+++.+++++++++++|+++
T Consensus       313 v~v~~g~~f~~~~~~~~Ri~~~~~~~~~~~~l~~~~~~  350 (350)
T TIGR03537       313 IVVAPGENFGSGEEGYVRVALVPTLEECEEALRLWERV  350 (350)
T ss_pred             EEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHhcC
Confidence            999999999753 6899999987889999999998763

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PTZ00377 alanine aminotransferase; Provisional

Probab=100.00  E-value=1.5e-37  Score=277.11  Aligned_cols=243  Identities=18%  Similarity=0.211  Sum_probs=188.5

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCC------CceEEEEcCCCCCChhhHH--------HhhcC
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSD------THLVEFVTAPNNPDGQMNK--------AVLKG   58 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~~--------~la~~   58 (259)
                      +|+|+.|...++..|.++        .+|.+|+++|++.+++      ++++++++|||||||.+++        ++|++
T Consensus       170 ~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~  249 (481)
T PTZ00377        170 IPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYE  249 (481)
T ss_pred             CCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHH
Confidence            599999999999998775        2477888999888753      7888899999999999993        78999


Q ss_pred             CCcEEEeeccc----cCC--CCCCCC----CC------CCCeEEEeccccc-cCCCcceEEEEEe---cCHHHHHHHHHh
Q 024997           59 PYAKSIYDHAY----FWP--HFAPIP----AP------ADEELMIFTISKL-TGHAGSRFGWAVI---KDEAVYQRMSAY  118 (259)
Q Consensus        59 ~~~~vi~De~y----~~~--~~~~~~----~~------~~~~i~~~S~SK~-~g~~G~R~G~i~~---~~~~~~~~~~~~  118 (259)
                      +|++||+||+|    |..  .+.++.    ..      ..++|+++||||. ++++|||+||+++   + +++++++...
T Consensus       250 ~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p-~~li~~l~~~  328 (481)
T PTZ00377        250 KGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIP-PEVREQIYKL  328 (481)
T ss_pred             CCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCC-HHHHHHHHHH
Confidence            99999999999    321  222221    11      1268999999997 5899999999997   6 7999999887


Q ss_pred             hhhhcCCCCHHHHHHHHHHHHHHHhc--CCcch---HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCC
Q 024997          119 ISLNTMGVSRECQLRAFKLLKVVLED--GGNNI---FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPP  193 (259)
Q Consensus       119 ~~~~~~~~~~~~q~~~~~~l~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  193 (259)
                      .. ...+++.+.|.++..+++....+  ..+.+   +.+.++.++++++.+.+.|+.+++             +.+..|+
T Consensus       329 ~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g-------------~~~~~p~  394 (481)
T PTZ00377        329 AS-INLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEG-------------VSCQPVE  394 (481)
T ss_pred             hh-eecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------cEeecCC
Confidence            64 34578999999999998631100  01113   333444578899999999987643             5667899


Q ss_pred             CCeeEEEecCCC--------------chHHHHHHHHHcCeeeecCCcccC--CCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          194 SPAYAWVKCERE--------------EDKDCYGILKAAKIIGREGKKFRA--EARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       194 ~~~~~~~~~~~~--------------~~~~~~~ll~~~gi~~~~g~~f~~--~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      +|+|+|++++..              +.+++..+++++||.++||+.|+.  +.+++|||++.+.+++++++++|.++++
T Consensus       395 gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~~~e~l~~~l~rl~~~~~  474 (481)
T PTZ00377        395 GAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMVKKIKEFHE  474 (481)
T ss_pred             eeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            999999876421              234567888899999999999985  3579999998778899999999999886


Q ss_pred             h
Q 024997          258 K  258 (259)
Q Consensus       258 ~  258 (259)
                      +
T Consensus       475 ~  475 (481)
T PTZ00377        475 S  475 (481)
T ss_pred             H
Confidence            4

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=100.00  E-value=6.3e-37  Score=268.27  Aligned_cols=237  Identities=19%  Similarity=0.249  Sum_probs=182.7

Q ss_pred             CCCcccchhhhhhccCc-----------ccccccChh-hhcccC-CCCceEEEEcCCCCCChhhHH--------HhhcCC
Q 024997            1 MPFYPLYQEQTDYFESV-----------DYKFEGEAN-LWGNAS-SDTHLVEFVTAPNNPDGQMNK--------AVLKGP   59 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~-----------~~~~~~d~~-~l~~~~-~~~~~~i~i~~p~NPtG~~~~--------~la~~~   59 (259)
                      +|+|+.|..+++..|..           +..+..|.+ .+...+ .++++++++||||||||.+++        ++|+++
T Consensus       129 ~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~  208 (409)
T PRK07590        129 DPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPEEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKEN  208 (409)
T ss_pred             CCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCcccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHc
Confidence            69999999999999975           444444321 232222 357899999999999999993        788999


Q ss_pred             CcEEEeeccc--c--CCC-CCCCC---CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHH------------HHhh
Q 024997           60 YAKSIYDHAY--F--WPH-FAPIP---APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRM------------SAYI  119 (259)
Q Consensus        60 ~~~vi~De~y--~--~~~-~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~------------~~~~  119 (259)
                      |++||+||+|  |  ... ..++.   ...+++|+++||||+||++|+|+||++++ +++++.+            ....
T Consensus       209 ~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~-~~li~~~~~~~~~~~~~~~~~~~  287 (409)
T PRK07590        209 GSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVP-KELKGKTSDGEGVSLNSLWNRRQ  287 (409)
T ss_pred             CeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcC-HHHhhhccccchhhhHHHHHHHH
Confidence            9999999999  3  221 12222   23457999999999999999999999999 6888732            1222


Q ss_pred             hhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEE
Q 024997          120 SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAW  199 (259)
Q Consensus       120 ~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (259)
                      .....+++.+.|.++..+++.    ..+.++++.++.++++++.+.+.|+.++              +.+..+.+|+|+|
T Consensus       288 ~~~~~~~s~~~q~a~~~~l~~----~~~~~~~~~~~~~~~~r~~l~~~L~~~~--------------~~~~~~~g~~f~w  349 (409)
T PRK07590        288 STKFNGVSYIVQRAAEAVYSP----EGKAQIKELIDYYMENAKIIREGLESAG--------------FEVYGGVNAPYIW  349 (409)
T ss_pred             hhcccCcCHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CceecCCcceEEE
Confidence            222246889999999888863    2456888899999999999999998753              4455778999999


Q ss_pred             EecCCC--chHHHHHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          200 VKCERE--EDKDCYGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       200 ~~~~~~--~~~~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      ++++..  +.++...+++++||.++||+.|+. +.+++||+++.+++++++++++|.+++
T Consensus       350 i~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~~  409 (409)
T PRK07590        350 VKTPDGMSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFGSRENVLEAMERIKKAL  409 (409)
T ss_pred             EECCCCCCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccCCHHHHHHHHHHHHhhC
Confidence            999763  356666777788999999999975 467999998678999999999998764

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=100.00  E-value=1.4e-37  Score=274.94  Aligned_cols=237  Identities=16%  Similarity=0.214  Sum_probs=185.1

Q ss_pred             CCCcccchhhhhhcc--Ccc--------cc-----cccChhhhcccCCCCceEEEEcCCCCCChhhHH--------Hhhc
Q 024997            1 MPFYPLYQEQTDYFE--SVD--------YK-----FEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLK   57 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g--~~~--------~~-----~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~   57 (259)
                      +|+|++|..++++.+  .++        ..     |.+|.++|++++++++++++++|||||||.+++        ++|+
T Consensus       191 ~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~  270 (521)
T TIGR03801       191 TPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVA  270 (521)
T ss_pred             CCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHH
Confidence            599999999988763  332        12     888999999988889999999999999999993        6787


Q ss_pred             CC--CcEEEeeccc--cCCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHH------------H-----
Q 024997           58 GP--YAKSIYDHAY--FWPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQR------------M-----  115 (259)
Q Consensus        58 ~~--~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~------------~-----  115 (259)
                      ++  |++||+||+|  |...+.++. ...+++|+++||||.||++|||+||++++++.+.++            +     
T Consensus       271 ~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~  350 (521)
T TIGR03801       271 NDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYS  350 (521)
T ss_pred             hcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhc
Confidence            75  9999999999  432333332 245689999999999999999999999984322211            1     


Q ss_pred             -------------------HHhhhhhcCCCCHHHHH-----HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhc
Q 024997          116 -------------------SAYISLNTMGVSRECQL-----RAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLS  171 (259)
Q Consensus       116 -------------------~~~~~~~~~~~~~~~q~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  171 (259)
                                         +......+.|.+.+.|.     ++.++++     ..+.+.++.++.+++|++.+.+.|. +
T Consensus       351 ~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~-----~~~~y~~~~~~~~~~R~~~l~~~Lg-~  424 (521)
T TIGR03801       351 SLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMD-----KENAYKAETKDICRRREKLLFRGLG-L  424 (521)
T ss_pred             cccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhc-----cchhHHHHHHHHHHHHHHHHHHhcC-C
Confidence                               33444556788898887     2334444     2456888899999999999888872 1


Q ss_pred             CCCccccccccccccceeeCCCCCeeEEEecCCC------------------chHHHHHHHHHcCeeeecCCcccCCCCe
Q 024997          172 NRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE------------------EDKDCYGILKAAKIIGREGKKFRAEARF  233 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~ll~~~gi~~~~g~~f~~~~~~  233 (259)
                      .              +...++.+++|+|++++..                  +.+++.++++++||.+.||..|+.++++
T Consensus       425 ~--------------~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~~~~  490 (521)
T TIGR03801       425 P--------------LQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGIVLLPGGGFGGPEWS  490 (521)
T ss_pred             C--------------CcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCEEEeCchhcCCCCCe
Confidence            1              2234688999999999731                  3578899999999999999999977789


Q ss_pred             EEEEeec-ChhhHHHHHHHHHHHhh
Q 024997          234 VRLSLLK-SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       234 ~Ris~~~-~~~~~~~~~~~l~~~l~  257 (259)
                      +|+|++. ++++++++.++|++++.
T Consensus       491 vRisla~l~~~~~~~~~~rl~~~~~  515 (521)
T TIGR03801       491 VRVSLANLNEYDYAEIGRAIRKILD  515 (521)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHHH
Confidence            9999986 88999999999999875

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=100.00  E-value=5.2e-37  Score=268.27  Aligned_cols=239  Identities=17%  Similarity=0.203  Sum_probs=190.2

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        ++++|++.|++.+++++++++++|||||||.+++        ++|+++|++||
T Consensus       126 ~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii  205 (401)
T TIGR01264       126 RPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPII  205 (401)
T ss_pred             CCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence            5999999999999887652        3678889998888777899999999999999972        78899999999


Q ss_pred             eeccc--c--CC-CCCCCCC--CCCCeEEEeccccccCCCcceEEEEEecCH-----HHHHHHHHhhhhhcCCCCHHHHH
Q 024997           65 YDHAY--F--WP-HFAPIPA--PADEELMIFTISKLTGHAGSRFGWAVIKDE-----AVYQRMSAYISLNTMGVSRECQL  132 (259)
Q Consensus        65 ~De~y--~--~~-~~~~~~~--~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~q~  132 (259)
                      +||+|  |  .. ...++..  ...++|+++||||+|+++|+|+||++++++     ++++.+..... ...+++.+.|.
T Consensus       206 ~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~  284 (401)
T TIGR01264       206 ADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQ-RILGPCTIVQG  284 (401)
T ss_pred             EEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHHhh-ccCCCCcHHHH
Confidence            99999  3  21 2222222  223589999999999999999999998741     34444444432 24668899999


Q ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-------C
Q 024997          133 RAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-------E  205 (259)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  205 (259)
                      ++..++++    ..++++++.++.++++++.+.+.|+.+++             +.+..|++|+|+|++++.       .
T Consensus       285 a~~~~l~~----~~~~~l~~~~~~~~~~r~~l~~~L~~~~~-------------~~~~~p~~g~f~~~~~~~~~~~~~~~  347 (401)
T TIGR01264       285 ALPSILLR----TPQEYFDGTLSVLESNAMLCYGALAAVPG-------------LRPVMPSGAMYMMVGIEMEHFPEFKN  347 (401)
T ss_pred             HHHHHHHh----CcHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CcccCCCeeeEEEEEecccccCCCCC
Confidence            99999973    24578899999999999999999987643             344578999999999753       1


Q ss_pred             chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          206 EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       206 ~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +.+++..+++++||.++||..|+. ++++|||++.+++++++++++|.+++++
T Consensus       348 ~~~~~~~l~~~~gI~v~pg~~f~~-~~~iRis~~~~~~~l~~~l~rl~~~~~~  399 (401)
T TIGR01264       348 DVEFTERLVAEQSVFCLPGSCFEY-PGFFRVVLTVPVVMMEEACSRIQEFCER  399 (401)
T ss_pred             HHHHHHHHHHhCCEEEeCchhcCC-CCeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            345666777789999999999964 5899999988889999999999998864

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=100.00  E-value=7e-37  Score=268.17  Aligned_cols=239  Identities=14%  Similarity=0.154  Sum_probs=192.3

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        .|++|+++|++.+++++++++++|||||||.+++        ++|+++|++||
T Consensus       135 ~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii  214 (412)
T PTZ00433        135 APGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLI  214 (412)
T ss_pred             cCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEE
Confidence            5999999999999988752        3678888998888778899999999999999872        77899999999


Q ss_pred             eeccc--c--CC-CCCCCCC--CCCCeEEEeccccccCCCcceEEEEEe--c---CHHHHHHHHHhhhhhcCCCCHHHHH
Q 024997           65 YDHAY--F--WP-HFAPIPA--PADEELMIFTISKLTGHAGSRFGWAVI--K---DEAVYQRMSAYISLNTMGVSRECQL  132 (259)
Q Consensus        65 ~De~y--~--~~-~~~~~~~--~~~~~i~~~S~SK~~g~~G~R~G~i~~--~---~~~~~~~~~~~~~~~~~~~~~~~q~  132 (259)
                      +||+|  |  .. ...++..  ...++++++||||+||++|+|+||+++  |   .+++++.+..... ..++++++.|.
T Consensus       215 ~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~q~  293 (412)
T PTZ00433        215 SDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGM-LVCGPCSVVQA  293 (412)
T ss_pred             EeccccccccCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhh-ccCCCChHHHH
Confidence            99999  2  21 2222222  223589999999999999999999997  2   1467777776544 34678999999


Q ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-------C
Q 024997          133 RAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-------E  205 (259)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  205 (259)
                      ++..++.+    ..+.++++.++.++++++.+.+.|+.+.+             +.++.|++|+|+|++++.       .
T Consensus       294 a~~~~l~~----~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-------------~~~~~p~gg~f~~~~l~~~~~~~~~~  356 (412)
T PTZ00433        294 ALGEALLN----TPQEHLEQIVAKLEEGAMVLYNHIGECIG-------------LSPTMPRGSMFLMSRLDLEKFRDIKS  356 (412)
T ss_pred             HHHHHHhc----CcHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------CcccCCCeeEEEEEEechhhcCCCCC
Confidence            99999974    24578899999999999999999986432             445678999999998863       1


Q ss_pred             chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          206 EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       206 ~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +.+++..+++++||.++||+.|+. .+++||+++.+++++++++++|.+++..
T Consensus       357 ~~~~~~~ll~~~gV~v~pg~~f~~-~~~iRis~~~~~e~l~~al~~l~~~~~~  408 (412)
T PTZ00433        357 DVEFYEKLLEEENVQVLPGEIFHM-PGFTRLTISRPVEVLREAVERIKAFCER  408 (412)
T ss_pred             HHHHHHHHHHhcCEEEeCccccCC-CCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            356777777778999999999975 4899999988888999999999998863

>PRK06290 aspartate aminotransferase; Provisional

Probab=100.00  E-value=7.7e-37  Score=267.13  Aligned_cols=234  Identities=21%  Similarity=0.271  Sum_probs=192.4

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        +|.+|++++++.+.+++++++++|||||||.+++        ++|+++|++||
T Consensus       137 ~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI  216 (410)
T PRK06290        137 VPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVV  216 (410)
T ss_pred             CCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEE
Confidence            5999999999999988752        3566788888888778999999999999999993        77899999999


Q ss_pred             eeccc--c--CCCCCC---CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Q 024997           65 YDHAY--F--WPHFAP---IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKL  137 (259)
Q Consensus        65 ~De~y--~--~~~~~~---~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  137 (259)
                      +||+|  +  .....+   +.+..+++|+++||||.+|++|+|+||++++ +++++.+.........+++.+.|.++..+
T Consensus       217 ~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~-~~l~~~l~~~~~~~~~~~~~~~q~aa~~~  295 (410)
T PRK06290        217 QDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGN-ELIVKAFATVKDNNDSGQFIAIQKAGIYA  295 (410)
T ss_pred             EecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeEEeC-HHHHHHHHHHHhccccCCcHHHHHHHHHH
Confidence            99999  2  222222   2234467899999999999999999999999 79999999888776777888999999999


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---------chH
Q 024997          138 LKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---------EDK  208 (259)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~  208 (259)
                      +++      ..++.+.++.++++++.+.+.|+.++              +.+.+|++++|+|++++..         +.+
T Consensus       296 l~~------~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~  355 (410)
T PRK06290        296 LDH------PEITEKIREKYSRRLDKLVKILNEVG--------------FKAEMPGGTFYLYVKAPKGTKSGIKFENAEE  355 (410)
T ss_pred             hhC------cHHHHHHHHHHHHHHHHHHHHHHhCC--------------CeecCCCeeeEEEEECCCccccCCCCCCHHH
Confidence            872      35788889999999999999998764              4556789999999998742         346


Q ss_pred             HHHHHHHHcCeeeecCCcccCCCCeEEEEeec---ChhhHHHHHHHHHHHhhh
Q 024997          209 DCYGILKAAKIIGREGKKFRAEARFVRLSLLK---SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       209 ~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~---~~~~~~~~~~~l~~~l~~  258 (259)
                      +...++++.++.++||..|+   +++||+++.   ++++.++.++.|.+.|.+
T Consensus       356 ~~~~Ll~~~~v~~~p~~~~~---~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~  405 (410)
T PRK06290        356 FSQYLIKEKLISTVPWDDAG---HFLRFSVTFEAKDEEEEDRILEEIKRRLSD  405 (410)
T ss_pred             HHHHHHHhCCEEEECCcccc---CeEEEEEEcccccccchhHHHHHHHHHHhh
Confidence            77778877788888987664   799999974   778888899998888764

>PRK05839 hypothetical protein; Provisional

Probab=100.00  E-value=6.2e-37  Score=265.30  Aligned_cols=227  Identities=18%  Similarity=0.223  Sum_probs=181.5

Q ss_pred             CCCcccchhhhhhccCcccc--------cccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDYK--------FEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~--------~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++..        |.+|....  .+ +++++++++|||||||.+++        ++|+++|++||
T Consensus       116 ~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~--~~-~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii  192 (374)
T PRK05839        116 NPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEK--EL-QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILI  192 (374)
T ss_pred             CCCchhhHHHHHhcCCEEEEeecccccCCcCCcchh--hh-ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEE
Confidence            59999999999999987643        33433222  12 46889999999999999993        77889999999


Q ss_pred             eeccc--c--CCCCCCCC--------CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHH
Q 024997           65 YDHAY--F--WPHFAPIP--------APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQL  132 (259)
Q Consensus        65 ~De~y--~--~~~~~~~~--------~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~  132 (259)
                      +||+|  |  .....++.        ...+++|+++||||.|+++|+|+||++++ +++++++.........+++.+.|.
T Consensus       193 ~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~-~~~~~~~~~~~~~~~~~~~~~~q~  271 (374)
T PRK05839        193 NDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGD-ASILKKYKAYRTYLGCASPLPLQK  271 (374)
T ss_pred             eccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecC-HHHHHHHHHHHhhcCCCCChHHHH
Confidence            99999  3  11222211        12368999999999999999999999998 799999988876666788999999


Q ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHH
Q 024997          133 RAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYG  212 (259)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (259)
                      ++..++.      .+.++++.++.++++++.+.+.|.                 +.  .|++|+|+|++++. +.++..+
T Consensus       272 ~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~l~-----------------~~--~p~gg~fi~~~~~~-~~~~~~~  325 (374)
T PRK05839        272 AAAVAWL------DDEHAEFFRNIYAKNLKLAREILG-----------------IT--IPPATFYVWLPVDN-DEEFTKK  325 (374)
T ss_pred             HHHHHhc------cchHHHHHHHHHHHHHHHHHHhcC-----------------CC--CCCeeEEEEEeCCC-hHHHHHH
Confidence            8887776      356888888999999887776542                 22  67899999999974 4677777


Q ss_pred             HHHHcCeeeecCCcccC---CCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          213 ILKAAKIIGREGKKFRA---EARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       213 ll~~~gi~~~~g~~f~~---~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      +++++||.++||+.|+.   +++++|||++.+.+++++++++|+++++
T Consensus       326 l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        326 LYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTYLE  373 (374)
T ss_pred             HHHHCCEEEeCchhhCCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhh
Confidence            77779999999998874   3689999998889999999999999875

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=100.00  E-value=1.4e-36  Score=264.61  Aligned_cols=238  Identities=20%  Similarity=0.208  Sum_probs=193.8

Q ss_pred             CCCcccchhhhhhccCcc-------cccccChhhhcccCC---CCceEEEEcCCCCCChhhHH--------HhhcCCCcE
Q 024997            1 MPFYPLYQEQTDYFESVD-------YKFEGEANLWGNASS---DTHLVEFVTAPNNPDGQMNK--------AVLKGPYAK   62 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~-------~~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~   62 (259)
                      +|+|+.|...++..|.++       .+|.+|++.|++.+.   ++++++++++||||||.+++        ++|+++|++
T Consensus       122 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~  201 (391)
T PRK07309        122 APAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIF  201 (391)
T ss_pred             CCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcE
Confidence            599999999999988765       135678888988874   36889999999999999872        788999999


Q ss_pred             EEeeccc--c--CC-CCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 024997           63 SIYDHAY--F--WP-HFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFK  136 (259)
Q Consensus        63 vi~De~y--~--~~-~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~  136 (259)
                      +|+||+|  |  .. ...++. ...+++++++||||.||++|+|+||++++ +++++++.........+++++.|.++..
T Consensus       202 ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~  280 (391)
T PRK07309        202 VISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAP-AEFTAQLIKSHQYLVTAATTMAQFAAVE  280 (391)
T ss_pred             EEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeC-HHHHHHHHHHHhhcccCCChHHHHHHHH
Confidence            9999999  2  11 222222 23478999999999999999999999999 7999999877655567889999999999


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC----chHHHHH
Q 024997          137 LLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE----EDKDCYG  212 (259)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  212 (259)
                      +++.     ...+....++.++++++.+.+.|+..+              +.++.|++|+|+|++++..    +.++...
T Consensus       281 ~l~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~  341 (391)
T PRK07309        281 ALTN-----GKDDALPMKKEYIKRRDYIIEKMTDLG--------------FKIIKPDGAFYIFAKIPAGYNQDSFKFLQD  341 (391)
T ss_pred             HHhC-----ChhHHHHHHHHHHHHHHHHHHHHHHCC--------------CeecCCCeeEEEEEECCCCCCCCHHHHHHH
Confidence            9873     334456677889999999999888753              5566889999999998743    2345667


Q ss_pred             HHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          213 ILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       213 ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +++++||.++||..|+. +++++||+++.+.+++++++++|++++++
T Consensus       342 l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~i~~l~~~~~~  388 (391)
T PRK07309        342 FARKKAVAFIPGAAFGPYGEGYVRLSYAASMETIKEAMKRLKEYMEE  388 (391)
T ss_pred             HHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            78789999999999975 46899999988889999999999998864

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=1.6e-36  Score=267.01  Aligned_cols=239  Identities=18%  Similarity=0.265  Sum_probs=188.1

Q ss_pred             CCCcccchhhhhh-ccCcc--------cccccChhhhcccCC------CCceEEEEcCCCCCChhhHH--------Hhhc
Q 024997            1 MPFYPLYQEQTDY-FESVD--------YKFEGEANLWGNASS------DTHLVEFVTAPNNPDGQMNK--------AVLK   57 (259)
Q Consensus         1 ~P~y~~~~~~~~~-~g~~~--------~~~~~d~~~l~~~~~------~~~~~i~i~~p~NPtG~~~~--------~la~   57 (259)
                      +|+|+.|...+.. .|.++        .+|.+|++.+++++.      .++++++++|||||||.+++        ++|+
T Consensus       151 ~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~  230 (447)
T PLN02607        151 TPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVV  230 (447)
T ss_pred             CCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHH
Confidence            5999999987764 56544        236678888888773      37889999999999999993        7899


Q ss_pred             CCCcEEEeeccc----cC-CCCCCCC---------CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhc
Q 024997           58 GPYAKSIYDHAY----FW-PHFAPIP---------APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNT  123 (259)
Q Consensus        58 ~~~~~vi~De~y----~~-~~~~~~~---------~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~  123 (259)
                      ++|+++|+||+|    |. +.+.++.         +..+++++++||||.||++|+|+||+++.++++++.++.....  
T Consensus       231 ~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~~~--  308 (447)
T PLN02607        231 RKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--  308 (447)
T ss_pred             HCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHhhc--
Confidence            999999999999    32 2232321         1256899999999999999999999998546888877665432  


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEec
Q 024997          124 MGVSRECQLRAFKLLKVVLEDGG-NNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKC  202 (259)
Q Consensus       124 ~~~~~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (259)
                      .++|.+.|.++..+|++.   .. +.++.+.+++++++++.+.+.|+..+              +.+..+.+|+|+|+++
T Consensus       309 ~~~s~~~q~~~~~~L~d~---~~~~~~l~~~r~~l~~~~~~~~~~L~~~g--------------i~~~~~~ag~fvw~~L  371 (447)
T PLN02607        309 TLVSSQTQHLLASMLSDE---EFTENYIRTNRERLRKRYEMIVQGLRRAG--------------IECLKGNAGLFCWMNL  371 (447)
T ss_pred             CCCCHHHHHHHHHHhCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CCcccCCeeEEEEEEc
Confidence            357889999999998741   11 24667888899999999999998754              4456789999999998


Q ss_pred             CCC------c--hHHHHHHHHHcCeeeecCCcccC-CCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          203 ERE------E--DKDCYGILKAAKIIGREGKKFRA-EARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       203 ~~~------~--~~~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      +..      +  .++...+++++||.+.||+.|+. .++|+||+|+. +++.++++++||.+++++
T Consensus       372 ~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~~  437 (447)
T PLN02607        372 SPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVALKRIHRFMDR  437 (447)
T ss_pred             hHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence            642      1  23455777778999999999975 47999999997 899999999999998864

>PRK08361 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.7e-36  Score=264.17  Aligned_cols=241  Identities=17%  Similarity=0.241  Sum_probs=197.9

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        .|.+|+++|++.++++++++++++||||||.+++        ++|+++++++|
T Consensus       124 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii  203 (391)
T PRK08361        124 DPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYIL  203 (391)
T ss_pred             CCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEE
Confidence            5999999999998887652        3568889999988888899999999999999983        67899999999


Q ss_pred             eeccc--c--C-CCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 024997           65 YDHAY--F--W-PHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLL  138 (259)
Q Consensus        65 ~De~y--~--~-~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l  138 (259)
                      +||+|  |  . ....++. ...+++++++||||.||++|+|+||++++ +++++.+.........+++.+.|.++..++
T Consensus       204 ~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l  282 (391)
T PRK08361        204 SDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAP-EQVIKDMIKLHAYIIGNVASFVQIAGIEAL  282 (391)
T ss_pred             EEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhccC-HHHHHHHHHHHhhhccCCChHHHHHHHHHh
Confidence            99999  2  2 1222222 23468999999999999999999999999 699999888776666788999999999998


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC--C-chHHHHHHHH
Q 024997          139 KVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--E-EDKDCYGILK  215 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~ll~  215 (259)
                      ++   +....++.+.++.++++++.+.+.|+.+++             +.+..|++|+|+|++++.  . +.++...+++
T Consensus       283 ~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~-------------~~~~~p~g~~~~~~~l~~~~~~~~~l~~~l~~  346 (391)
T PRK08361        283 RS---KESWKAVEEMRKEYNERRKLVLKRLKEMPH-------------IKVFEPKGAFYVFANIDETGMSSEDFAEWLLE  346 (391)
T ss_pred             cC---CcccHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CeecCCCEEEEEEEECCCCCCCHHHHHHHHHH
Confidence            74   122356888899999999999999987643             455688999999999974  2 3456666667


Q ss_pred             HcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          216 AAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       216 ~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ++||.++||..|+. +.+++||+++.+++++++++++|++++++
T Consensus       347 ~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~l~~  390 (391)
T PRK08361        347 KARVVVIPGTAFGKAGEGYIRISYATSKEKLIEAMERMEKALEE  390 (391)
T ss_pred             hCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            78999999999975 46899999988888999999999998864

>PRK08363 alanine aminotransferase; Validated

Probab=100.00  E-value=4.6e-36  Score=262.07  Aligned_cols=239  Identities=17%  Similarity=0.245  Sum_probs=192.7

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|...        .+|.+|.+.|++.+++++++++++|||||||.+++        ++|+++|+++|
T Consensus       124 ~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li  203 (398)
T PRK08363        124 GPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVI  203 (398)
T ss_pred             CCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEE
Confidence            599999999998887643        23567888888888888899999999999999872        77899999999


Q ss_pred             eeccc----cCCCCCCCC--CCCCCeEEEeccccccCCCcceEEEEEe--cCHHHHHHHHHhhhh---hcCCCCHHHHHH
Q 024997           65 YDHAY----FWPHFAPIP--APADEELMIFTISKLTGHAGSRFGWAVI--KDEAVYQRMSAYISL---NTMGVSRECQLR  133 (259)
Q Consensus        65 ~De~y----~~~~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~--~~~~~~~~~~~~~~~---~~~~~~~~~q~~  133 (259)
                      +||+|    |.+...++.  ...+++++++||||.|+++|+|+||+++  + +++++.+......   ...+++.+.|.+
T Consensus       204 ~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~s~~~q~~  282 (398)
T PRK08363        204 SDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDP-EGKLAEVREAIDKLARIRLCPNTPAQFA  282 (398)
T ss_pred             EhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCc-HHHHHHHHHHHHHHhcccccCChHHHHH
Confidence            99999    222222222  2345799999999999999999999998  5 6777776655432   236789999999


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC----CchHH
Q 024997          134 AFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER----EEDKD  209 (259)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  209 (259)
                      +..++..     .++++.+.++.++++++.+.+.|+.+++             +.+..|++|+|+|++++.    .+.++
T Consensus       283 ~~~~l~~-----~~~~l~~~~~~~~~~~~~l~~~L~~~~~-------------~~~~~p~g~~~~~~~l~~~~~~~~~~~  344 (398)
T PRK08363        283 AIAGLTG-----PMDYLEEYMKKLKERRDYIYKRLNEIPG-------------ISTTKPQGAFYIFPRIEEGPWKDDKEF  344 (398)
T ss_pred             HHHHHhC-----ChHHHHHHHHHHHHHHHHHHHHHhcCCC-------------CEecCCCeEEEEEEEeccCCCCCHHHH
Confidence            9999872     5678888999999999999999986543             445678999999998864    23566


Q ss_pred             HHHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          210 CYGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       210 ~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +.++++++||.++||..|+. +.+++|||++.+++++++++++|++++.+
T Consensus       345 ~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~~~~  394 (398)
T PRK08363        345 VLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEEFMRE  394 (398)
T ss_pred             HHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            77888899999999999975 46899999987889999999999998865

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=100.00  E-value=2.1e-36  Score=271.72  Aligned_cols=241  Identities=15%  Similarity=0.221  Sum_probs=184.9

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...+++.|.++        .+|.+|+++|++.+++++++++++|||||||.+++        ++|+++|++||
T Consensus       239 ~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii  318 (517)
T PRK13355        239 SPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIF  318 (517)
T ss_pred             CCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEE
Confidence            599999999999998865        24788999999999889999999999999999983        78899999999


Q ss_pred             eeccc--c--CC-CCCCCCCC--CCCeEEEeccccccCCCcceEEEEEec-CHHH----HHHHHHhhhhhcCCCCHHHHH
Q 024997           65 YDHAY--F--WP-HFAPIPAP--ADEELMIFTISKLTGHAGSRFGWAVIK-DEAV----YQRMSAYISLNTMGVSRECQL  132 (259)
Q Consensus        65 ~De~y--~--~~-~~~~~~~~--~~~~i~~~S~SK~~g~~G~R~G~i~~~-~~~~----~~~~~~~~~~~~~~~~~~~q~  132 (259)
                      +||+|  |  .. ...++...  ...+++++||||+|+++|||+||++++ ++++    ++.+... .....+++.+.|.
T Consensus       319 ~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~  397 (517)
T PRK13355        319 SDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNML-ANMRLCSNVPAQS  397 (517)
T ss_pred             EehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHHH-hcCcCCcChHHHH
Confidence            99999  2  22 22232221  224677899999999999999999954 1344    3334322 2234678899999


Q ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC------c
Q 024997          133 RAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE------E  206 (259)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  206 (259)
                      ++..+|...  ...++++.+. +++.++++.+.+.|+++++             +.+..|++++|+|++++..      +
T Consensus       398 a~~~aL~~~--~~~~~~~~~~-~~~~~~r~~l~~~L~~~~g-------------~~~~~p~g~fy~~~~l~~~~~~~~~~  461 (517)
T PRK13355        398 IVQTALGGH--QSVKDYLVPG-GRVYEQRELVYNALNAIPG-------------ISAVKPKAAFYIFPKIDVKKFNIHDD  461 (517)
T ss_pred             HHHHHhcCC--ccHHHHHHHH-HHHHHHHHHHHHHHhcCCC-------------cccCCCCeeeEEEeecCcccCCCCCH
Confidence            999988620  0012344443 3455667888888887643             5567899999999988631      3


Q ss_pred             hHHHHHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          207 DKDCYGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       207 ~~~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      .+++.++|+++||.++||+.|+. +++++|||++.+++++++++++|.+++++
T Consensus       462 ~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~~~~~l~~a~~rl~~~~~~  514 (517)
T PRK13355        462 EQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDAMDRLADFFSY  514 (517)
T ss_pred             HHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            56788889999999999999974 57899999977999999999999999864

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=2e-36  Score=269.34  Aligned_cols=238  Identities=19%  Similarity=0.244  Sum_probs=183.8

Q ss_pred             CCCcccchhhhhh-ccCcc--------cccccChhhhcccC------CCCceEEEEcCCCCCChhhHH--------Hhhc
Q 024997            1 MPFYPLYQEQTDY-FESVD--------YKFEGEANLWGNAS------SDTHLVEFVTAPNNPDGQMNK--------AVLK   57 (259)
Q Consensus         1 ~P~y~~~~~~~~~-~g~~~--------~~~~~d~~~l~~~~------~~~~~~i~i~~p~NPtG~~~~--------~la~   57 (259)
                      +|+|+.|...++. .|.++        .+|++|++.+++++      ..++++++++|||||||.+++        ++|+
T Consensus       150 ~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~  229 (496)
T PLN02376        150 SPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVT  229 (496)
T ss_pred             CCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHH
Confidence            5999999987774 67765        24677788886542      247888899999999999993        7889


Q ss_pred             CCCcEEEeeccc----cC-CCCCCCC---C-------CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhh
Q 024997           58 GPYAKSIYDHAY----FW-PHFAPIP---A-------PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN  122 (259)
Q Consensus        58 ~~~~~vi~De~y----~~-~~~~~~~---~-------~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~  122 (259)
                      ++|++||+||+|    |. +.+.++.   .       ..+++++++||||.||++|+|+||++++++.+.+.+...... 
T Consensus       230 ~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~~~-  308 (496)
T PLN02376        230 RKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSF-  308 (496)
T ss_pred             HcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHhhc-
Confidence            999999999999    32 2233321   1       113577899999999999999999999755676666554432 


Q ss_pred             cCCCCHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEe
Q 024997          123 TMGVSRECQLRAFKLLKVVLEDGG-NNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVK  201 (259)
Q Consensus       123 ~~~~~~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (259)
                       ..++.+.|.++..+++..   .. +.++.+.+++++++++.+.+.|++.+              +.+..+.+|+|+|++
T Consensus       309 -~~vs~~~Q~a~~~~L~d~---~~~~~~l~~~r~~l~~r~~~l~~~L~~~g--------------i~~~~~~aG~flwi~  370 (496)
T PLN02376        309 -GLVSSQTQLMLASMLSDD---QFVDNFLMESSRRLGIRHKVFTTGIKKAD--------------IACLTSNAGLFAWMD  370 (496)
T ss_pred             -CCCCHHHHHHHHHHhCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CcccCCCceEEEEEE
Confidence             458899999999999731   12 34566678889999999999998653              455678999999999


Q ss_pred             cCCC---------chHHHHHHHHHcCeeeecCCcccC-CCCeEEEEeec-ChhhHHHHHHHHHHHhh
Q 024997          202 CERE---------EDKDCYGILKAAKIIGREGKKFRA-EARFVRLSLLK-SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       202 ~~~~---------~~~~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~-~~~~~~~~~~~l~~~l~  257 (259)
                      ++..         +.++...+++++||.+.||+.|+. .++|+||+|+. ++++++++++||++++.
T Consensus       371 l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~~~l~  437 (496)
T PLN02376        371 LRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQDFVS  437 (496)
T ss_pred             chhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHH
Confidence            9642         134556677778999999999974 47899999996 88999999999999885

>PRK07777 aminotransferase; Validated

Probab=100.00  E-value=5.1e-36  Score=260.89  Aligned_cols=237  Identities=16%  Similarity=0.188  Sum_probs=194.4

Q ss_pred             CCCcccchhhhhhccCccc---------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEE
Q 024997            1 MPFYPLYQEQTDYFESVDY---------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKS   63 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~---------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~v   63 (259)
                      +|+|+.|..+++..|....         +|.+|+++|++.+.++++++++++||||||.+++        ++|+++++++
T Consensus       116 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~l  195 (387)
T PRK07777        116 EPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLV  195 (387)
T ss_pred             CCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEE
Confidence            5899999999988887541         3568889999988888899999999999999872        7889999999


Q ss_pred             Eeeccc----cCC-CCCCCC---CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 024997           64 IYDHAY----FWP-HFAPIP---APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAF  135 (259)
Q Consensus        64 i~De~y----~~~-~~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~  135 (259)
                      |+||+|    |.. ...++.   +..+++++++||||.||++|+|+||++++ +++++.+.........+.+.+.|.++.
T Consensus       196 i~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~  274 (387)
T PRK07777        196 ITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGP-APLIAAVRAAKQYLTYVGGAPFQPAVA  274 (387)
T ss_pred             EEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecC-HHHHHHHHHHHhhcccCCCCHHHHHHH
Confidence            999999    212 222222   23568999999999999999999999999 699999988777666778888999888


Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC----CchHHHH
Q 024997          136 KLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER----EEDKDCY  211 (259)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  211 (259)
                      .++..     .+.++.+.++.++++++.+.+.|+.++              +.+.++++++|+|++++.    .+.+++.
T Consensus       275 ~~l~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~--------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  335 (387)
T PRK07777        275 HALDH-----EDAWVAALRDSLQAKRDRLAAGLAEAG--------------FEVHDSAGTYFLCADPRPLGYDDGTEFCR  335 (387)
T ss_pred             HHHhC-----CcHHHHHHHHHHHHHHHHHHHHHHhCC--------------CCccCCCcceEEEecccccCCCCHHHHHH
Confidence            88873     467888889999999999999998753              445678899999998752    1356677


Q ss_pred             HHHHHcCeeeecCCcccC----CCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          212 GILKAAKIIGREGKKFRA----EARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       212 ~ll~~~gi~~~~g~~f~~----~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      .+++++||.++||+.|+.    +.+++||+++.+++++++++++|+++.-
T Consensus       336 ~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~~~~~l~~~l~~l~~~~~  385 (387)
T PRK07777        336 ALPERVGVAAIPMSVFYDPADAWNHLVRFAFCKRDDTLDEAIRRLRALRG  385 (387)
T ss_pred             HHHHhCCEEEeCchHhCCCCcCCCCeEEEEecCCHHHHHHHHHHHHHHhc
Confidence            777788999999998863    2568999998899999999999998754

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=100.00  E-value=5.3e-36  Score=246.66  Aligned_cols=241  Identities=17%  Similarity=0.232  Sum_probs=206.3

Q ss_pred             CCCcccchhhhhhccCcc---------cccccChhhhcccCC-CCceEEEEcCCCCCChhhHH--------HhhcCCCcE
Q 024997            1 MPFYPLYQEQTDYFESVD---------YKFEGEANLWGNASS-DTHLVEFVTAPNNPDGQMNK--------AVLKGPYAK   62 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~---------~~~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~   62 (259)
                      .|.|+++..+....|.+.         ..|.+|+++|++.+. ++++++++||||||||.++.        ++|.+||+.
T Consensus       114 tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~  193 (388)
T COG1168         114 TPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVR  193 (388)
T ss_pred             CCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCE
Confidence            599999999999988876         358999999999985 46799999999999999993        899999999


Q ss_pred             EEeeccc----cCC-CCCCCC----CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHH-HhhhhhcCCCCHHHHH
Q 024997           63 SIYDHAY----FWP-HFAPIP----APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMS-AYISLNTMGVSRECQL  132 (259)
Q Consensus        63 vi~De~y----~~~-~~~~~~----~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~-~~~~~~~~~~~~~~q~  132 (259)
                      ||+||++    |.+ .+.++.    ...++.+.+.|-||+|+++|++.++++++++++.+++. +.......++|.+...
T Consensus       194 VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~  273 (388)
T COG1168         194 VISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGII  273 (388)
T ss_pred             EEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHH
Confidence            9999999    322 222222    34578999999999999999999999999888866654 4445666788999999


Q ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--c-hHH
Q 024997          133 RAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--E-DKD  209 (259)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~  209 (259)
                      +...+++.     +..|+++.++.++.|++.+.+.++..       +|.     ++...|+|.+.+|+|+...  + .+.
T Consensus       274 A~~aAY~~-----G~~WLd~L~~yl~~N~~~~~~~l~~~-------~P~-----v~v~~p~gTYL~WLD~r~l~l~d~~l  336 (388)
T COG1168         274 ATEAAYNQ-----GEPWLDELLEYLKDNRDYVADFLNKH-------LPG-----VKVTEPQGTYLAWLDCRELGLDDSEL  336 (388)
T ss_pred             HHHHHHHh-----chHHHHHHHHHHHHHHHHHHHHHHhh-------CCC-----cEEecCCCceeeeeeccccCCChHHH
Confidence            88889984     88999999999999999999999853       233     7788999999999999887  3 577


Q ss_pred             HHHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          210 CYGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       210 ~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ...++++.+|.+.+|..||. +++++|+.++.+.+-++++++||++.+++
T Consensus       337 ~~~ll~~akVal~~G~~FG~~g~gf~RlN~acpr~~L~eal~ri~~al~~  386 (388)
T COG1168         337 AEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAILEEALERLKRALKK  386 (388)
T ss_pred             HHHHHHhhcEeccCCCccCcCCCceEEEecCCCHHHHHHHHHHHHHHHhc
Confidence            88889999999999999997 67999999999999999999999988763

>PRK08175 aminotransferase; Validated

Probab=100.00  E-value=4.8e-36  Score=261.63  Aligned_cols=238  Identities=20%  Similarity=0.205  Sum_probs=193.1

Q ss_pred             CCCcccchhhhhhccCccccccc-----ChhhhcccCC---CCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEG-----EANLWGNASS---DTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~-----d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++..+..     +.+.|++.++   ++++++++++||||||.+++        ++|+++|+++|
T Consensus       122 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii  201 (395)
T PRK08175        122 NPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVV  201 (395)
T ss_pred             CCCCcchHHHHHHcCCeEEEEecccCCCcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEE
Confidence            59999999999988887643333     2456676663   47889999999999999983        78999999999


Q ss_pred             eeccc--c--CC-CCCCC---CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 024997           65 YDHAY--F--WP-HFAPI---PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFK  136 (259)
Q Consensus        65 ~De~y--~--~~-~~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~  136 (259)
                      +||+|  +  .. ...++   ....+++++++||||.||++|+|+||++++ +++++++.+.......+++++.|.++..
T Consensus       202 ~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~  280 (395)
T PRK08175        202 HDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGN-PELVSALARIKSYHDYGTFTPLQVAAIA  280 (395)
T ss_pred             EecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCC-HHHHHHHHHHHhhcccCCCcHHHHHHHH
Confidence            99999  2  21 12222   223467899999999999999999999998 7999999988876677888889999988


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-----chHHHH
Q 024997          137 LLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-----EDKDCY  211 (259)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  211 (259)
                      +++.     .+.++++.++.++++++.+.+.|+.++              +.+..|++|+|+|++++..     +.+++.
T Consensus       281 ~l~~-----~~~~~~~~~~~~~~~~~~~~~~L~~~~--------------~~~~~p~~g~~i~i~l~~~~~~~~~~~~~~  341 (395)
T PRK08175        281 ALEG-----DQQCVRDIAEQYKRRRDVLVKGLHEAG--------------WMVEMPKASMYVWAKIPEPYAAMGSLEFAK  341 (395)
T ss_pred             HHhC-----cHHHHHHHHHHHHHHHHHHHHHHHHcC--------------CcccCCCEEEEEEEECCcccCCCCHHHHHH
Confidence            8873     466788899999999999999999764              4445788999999999753     245566


Q ss_pred             HHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          212 GILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       212 ~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ++++++||.+.||+.|+. +++++||+++.+.+.+++++++|.+++.+
T Consensus       342 ~l~~~~gv~v~p~~~f~~~~~~~lRis~~~~~~~~~~al~~l~~~l~~  389 (395)
T PRK08175        342 KLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRA  389 (395)
T ss_pred             HHHHhCCEEEeCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence            677789999999999975 45799999987889999999999998864

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=100.00  E-value=1.8e-35  Score=258.67  Aligned_cols=239  Identities=21%  Similarity=0.272  Sum_probs=190.0

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        ++.+|++.+++.++++++++++++||||||.+++        ++|+++|+++|
T Consensus       127 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii  206 (403)
T TIGR01265       127 RPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPII  206 (403)
T ss_pred             CCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence            5899999999888887642        3568889999888888899999999999999962        78899999999


Q ss_pred             eeccc--c--CC-CCCCCC--CCCCCeEEEeccccccCCCcceEEEEEecC-HH-----HHHHHHHhhhhhcCCCCHHHH
Q 024997           65 YDHAY--F--WP-HFAPIP--APADEELMIFTISKLTGHAGSRFGWAVIKD-EA-----VYQRMSAYISLNTMGVSRECQ  131 (259)
Q Consensus        65 ~De~y--~--~~-~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~-~~-----~~~~~~~~~~~~~~~~~~~~q  131 (259)
                      +||+|  |  .. ...++.  ....++|+++||||+|+++|+|+||+++++ ++     +++.+..... ...+++.+.|
T Consensus       207 ~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q  285 (403)
T TIGR01265       207 ADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQ-RILGPATIVQ  285 (403)
T ss_pred             EEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhh-hhcCCChHHH
Confidence            99999  3  21 222222  223469999999999999999999999852 22     4444444432 2467899999


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC------
Q 024997          132 LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE------  205 (259)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  205 (259)
                      .++..+++.    ..+.++++.++.++++++.+.+.|+.+++             +.+..|.+|+|+|++++..      
T Consensus       286 ~~~~~~l~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------------~~~~~p~~g~f~~~~~~~~~~~~~~  348 (403)
T TIGR01265       286 GALPDILEN----TPQEFFDGKISVLKSNAELCYEELKDIPG-------------LVCPKPEGAMYLMVKLELELFPEIK  348 (403)
T ss_pred             HHHHHHHHh----ChHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------ceecCCCceeEEEEeccccccCCCC
Confidence            999999974    24578899999999999999999987543             4445789999999998642      


Q ss_pred             -chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          206 -EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       206 -~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                       +.+++..+++++||.++||+.|+. .+++|||++.+++++++++++|.+++++
T Consensus       349 ~~~~~~~~l~~~~gv~v~pg~~f~~-~~~iRis~~~~~~~l~~~l~~l~~~~~~  401 (403)
T TIGR01265       349 DDVDFCEKLVREESVICLPGSAFGL-PNWVRITITVPESMLEEACSRIKEFCER  401 (403)
T ss_pred             CHHHHHHHHHHhCCEEEeCccccCC-CCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence             345667778889999999999974 5899999988888999999999998864

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PLN02231 alanine transaminase

Probab=100.00  E-value=5e-36  Score=268.30  Aligned_cols=244  Identities=18%  Similarity=0.214  Sum_probs=187.6

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCC------CceEEEEcCCCCCChhhHH--------HhhcC
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSD------THLVEFVTAPNNPDGQMNK--------AVLKG   58 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~~--------~la~~   58 (259)
                      +|+|+.|...+...|.++        .+|++|+++|++.+++      ++++++++|||||||.+++        ++|++
T Consensus       223 ~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~  302 (534)
T PLN02231        223 IPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQ  302 (534)
T ss_pred             CCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHH
Confidence            599999999999998765        2478899999888743      6888999999999999993        88999


Q ss_pred             CCcEEEeeccc----cC--CCCCCCC------C---CCCCeEEEecccccc-CCCcceEEEEEec--CHHHHHHHHHhhh
Q 024997           59 PYAKSIYDHAY----FW--PHFAPIP------A---PADEELMIFTISKLT-GHAGSRFGWAVIK--DEAVYQRMSAYIS  120 (259)
Q Consensus        59 ~~~~vi~De~y----~~--~~~~~~~------~---~~~~~i~~~S~SK~~-g~~G~R~G~i~~~--~~~~~~~~~~~~~  120 (259)
                      +|++||+||+|    |.  ..+.++.      +   ...++++++||||.+ |.+|+|+||++++  ++++++.+.....
T Consensus       303 ~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~  382 (534)
T PLN02231        303 EGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVAS  382 (534)
T ss_pred             cCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHh
Confidence            99999999999    32  1222321      1   122589999999975 8999999999873  3799999887765


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHhc--CCcc---hHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCC
Q 024997          121 LNTMGVSRECQLRAFKLLKVVLED--GGNN---IFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSP  195 (259)
Q Consensus       121 ~~~~~~~~~~q~~~~~~l~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (259)
                       ...+++.+.|.++..+++....+  ..+.   +.+..++.++++++.+.+.|+++++             +.+.+|+||
T Consensus       383 -~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~g-------------i~~~~p~Gg  448 (534)
T PLN02231        383 -VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEG-------------VTCNKAEGA  448 (534)
T ss_pred             -hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------ceecCCCee
Confidence             35677888899888888531000  1112   2334578899999999999987643             667789999


Q ss_pred             eeEEEecC--CC------------chHHHHHHHHHcCeeeecCCcccC--CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          196 AYAWVKCE--RE------------EDKDCYGILKAAKIIGREGKKFRA--EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       196 ~~~~~~~~--~~------------~~~~~~~ll~~~gi~~~~g~~f~~--~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +|+|.++.  ..            +..++..+++++||.++||+.|+.  +..++|+++..++++++++++||.+++++
T Consensus       449 fylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~~~~e~l~eal~RL~~~~~~  527 (534)
T PLN02231        449 MYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAIVSRLTEFHKS  527 (534)
T ss_pred             eEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            99996553  21            122456688889999999999985  34579999988999999999999998763

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=100.00  E-value=1.8e-35  Score=259.72  Aligned_cols=241  Identities=16%  Similarity=0.202  Sum_probs=183.2

Q ss_pred             CCCcccchhhhhhcc------Ccc-----c--ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCC
Q 024997            1 MPFYPLYQEQTDYFE------SVD-----Y--KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGP   59 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g------~~~-----~--~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~   59 (259)
                      +|+||.|...+...+      ...     .  +|++|++.|+  +.+++++++++|||||||.+++        ++|+++
T Consensus       134 ~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~  211 (416)
T PRK09440        134 APEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQH  211 (416)
T ss_pred             CCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHc
Confidence            589999988654332      111     1  3678888887  4567899999999999999993        788999


Q ss_pred             CcEEEeecccc--CCCC--CCC-CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHH
Q 024997           60 YAKSIYDHAYF--WPHF--API-PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRA  134 (259)
Q Consensus        60 ~~~vi~De~y~--~~~~--~~~-~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  134 (259)
                      |++||+||+|.  .+..  ... +...+++|+++||||+ +++|+|+||++++ +++++++.........+++.+.|.++
T Consensus       212 ~~~iI~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~-~~pGlRiG~~i~~-~~l~~~~~~~~~~~~~~~s~~~q~~~  289 (416)
T PRK09440        212 NIPLLIDNAYGPPFPGIIFSEATPLWNPNIILCMSLSKL-GLPGVRCGIVIAD-EEIIEALSNMNGIISLAPGRLGPAIA  289 (416)
T ss_pred             CCcEEEeCCccccCCCcchhhcCccccCCeEEEeccccc-CCCcceEEEEeCC-HHHHHHHHHHHHHhccCCCcHHHHHH
Confidence            99999999993  1221  111 1225789999999996 8999999999999 79999999888777778899999999


Q ss_pred             HHHHHHHHhcCCcchHHH-HHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC--CchHHHH
Q 024997          135 FKLLKVVLEDGGNNIFEF-GYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--EEDKDCY  211 (259)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  211 (259)
                      ..++++   +....+..+ .++.++++++.+.+.|++..       ++  . .+.++.|++|+|+|++++.  .+.+.+.
T Consensus       290 ~~~l~~---~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l-------~~--~-~~~~~~p~gg~fiw~~~~~~~~~~~~~~  356 (416)
T PRK09440        290 AEMIES---GDLLRLSETVIRPFYRQKVQLAIALLRRYL-------PD--E-PCLIHKPEGAIFLWLWFKDLPITTEELY  356 (416)
T ss_pred             HHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cc--C-CeEEecCCCceEEEEECCCCCCCHHHHH
Confidence            999974   112233333 56778888888888887531       10  0 0345688999999999975  2444455


Q ss_pred             HHHHHcCeeeecCCcccCC--------CCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          212 GILKAAKIIGREGKKFRAE--------ARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       212 ~ll~~~gi~~~~g~~f~~~--------~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +.+.++||.++||+.|+.+        .+++|||++.+.+++++++++|++++++
T Consensus       357 ~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~~~~~l~~~i~~l~~~~~~  411 (416)
T PRK09440        357 QRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAILAEEVEK  411 (416)
T ss_pred             HHHHHCCEEEechHhhCCCCccccCCcCceEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            5667899999999998632        3589999987899999999999998764

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=100.00  E-value=2e-35  Score=258.31  Aligned_cols=237  Identities=20%  Similarity=0.250  Sum_probs=178.1

Q ss_pred             CCCcccchhhhhhccC-----------cccccccChh-hhcccC--CCCceEEEEcCCCCCChhhHH--------HhhcC
Q 024997            1 MPFYPLYQEQTDYFES-----------VDYKFEGEAN-LWGNAS--SDTHLVEFVTAPNNPDGQMNK--------AVLKG   58 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~-----------~~~~~~~d~~-~l~~~~--~~~~~~i~i~~p~NPtG~~~~--------~la~~   58 (259)
                      +|+|+.|..+++..|.           .+..+..+.+ .+...+  .+++++++++|||||||.+++        ++|++
T Consensus       125 ~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~  204 (402)
T TIGR03542       125 DPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPEEPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANE  204 (402)
T ss_pred             CCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCccccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHH
Confidence            5999999999999988           5433333211 121111  256899999999999999993        78899


Q ss_pred             CCcEEEeeccc--c--CCC-CCCC---CCCCCCeEEEeccccccCCCcceEEEEEecCHHHH--------HHHHHhhhhh
Q 024997           59 PYAKSIYDHAY--F--WPH-FAPI---PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVY--------QRMSAYISLN  122 (259)
Q Consensus        59 ~~~~vi~De~y--~--~~~-~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~--------~~~~~~~~~~  122 (259)
                      +|++||+||+|  |  .+. ..++   +...+++|+++||||.||++|+|+||++++ ++++        +.+.......
T Consensus       205 ~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~-~~l~~~~~~~~~~~~~~~~~~~  283 (402)
T TIGR03542       205 HGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVP-KELTYADGHSVIQDWERRQCTK  283 (402)
T ss_pred             cCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEEEEec-HHHhhcchhhHHHHHHHHhhhc
Confidence            99999999999  3  221 1222   222467999999999999999999999999 6876        2222222223


Q ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEec
Q 024997          123 TMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKC  202 (259)
Q Consensus       123 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (259)
                      ..+++.+.|.++..++..    ....++.+.++.++++++.+.+.|+..+              +....+.+|+|+|+++
T Consensus       284 ~~~~s~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~L~~~~--------------~~~~~~~~~~f~~v~l  345 (402)
T TIGR03542       284 FNGASYPVQRAAEAAYAG----EGLQPILEAISYYMENARILRKALEAAG--------------FKVYGGEHAPYLWVKT  345 (402)
T ss_pred             ccCCCHHHHHHHHHHHcC----cchhHHHHHHHHHHHHHHHHHHHHHhcC--------------ceecCCCceeEEEEEC
Confidence            346888999988888873    1234566677889999999999998753              3445677899999999


Q ss_pred             CCC--chHHHHHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          203 ERE--EDKDCYGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       203 ~~~--~~~~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      +..  +.++...+++++||.++||+.|+. +.+++||+++.+++++++++++|++.|
T Consensus       346 ~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~~  402 (402)
T TIGR03542       346 PEGISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFGKRENIVEACERIKEAL  402 (402)
T ss_pred             CCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHhhC
Confidence            763  356777788788999999999975 368999998778999999999998764

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=100.00  E-value=2.5e-35  Score=254.62  Aligned_cols=227  Identities=17%  Similarity=0.207  Sum_probs=182.8

Q ss_pred             CCCcccchhhhhhccCcccccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEeeccc--c
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIYDHAY--F   70 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~De~y--~   70 (259)
                      +|+|+.|...++..|.++..+. +.++++   .+++++++++|||||||.+++        ++|+++|++||+||+|  |
T Consensus       118 ~p~y~~~~~~~~~~g~~~~~~~-~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~  193 (364)
T PRK07865        118 ELAYPTYEVGARLAGATVVRAD-SLTELG---PQRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLEL  193 (364)
T ss_pred             CCCcccHHHHHHhcCCEEEecC-ChhhCC---cccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhh
Confidence            5999999999999998876553 233333   357889999999999999983        6789999999999999  2


Q ss_pred             --CC-CCCCCC-----CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHH
Q 024997           71 --WP-HFAPIP-----APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVL  142 (259)
Q Consensus        71 --~~-~~~~~~-----~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~  142 (259)
                        .+ ....+.     ...+++++++||||.||++|+|+||++++ +++++++.........+++.+.|.++..+++   
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---  269 (364)
T PRK07865        194 GWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGD-PALVAELLEVRKHAGMMVPAPVQAAMVAALG---  269 (364)
T ss_pred             ccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecC-HHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC---
Confidence              22 111111     13467999999999999999999999998 7999999988776778899999999988887   


Q ss_pred             hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeee
Q 024997          143 EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGR  222 (259)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~  222 (259)
                         .++++.+.++.++++++.+.+.|+..+              +.+..+++|+|+|++++.. ...+.+.+.++||.++
T Consensus       270 ---~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gv~v~  331 (364)
T PRK07865        270 ---DDAHVREQRERYARRRAVLRPALEAAG--------------FRVDHSEAGLYLWATRGED-CWDTVAWLAERGILVA  331 (364)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHHHHcC--------------CcccCCCccEEEEEeCCCC-HHHHHHHHHHCCEEEe
Confidence               345778888999999999999998753              4455788999999998543 3444566678999999


Q ss_pred             cCCcccC-CCCeEEEEeecChhhHHHHHHHHH
Q 024997          223 EGKKFRA-EARFVRLSLLKSQDDFDLLLHRLD  253 (259)
Q Consensus       223 ~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~  253 (259)
                      ||..|+. .++++||+++.+++++++++++|+
T Consensus       332 pg~~f~~~~~~~iRi~~~~~~~~~~~~~~~l~  363 (364)
T PRK07865        332 PGDFYGPAGAQHVRVALTATDERIAAAVERLA  363 (364)
T ss_pred             CccccCcCCCCEEEEEecCCHHHHHHHHHHhh
Confidence            9998875 468999999888899999999985

>PRK05764 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.4e-35  Score=256.28  Aligned_cols=238  Identities=20%  Similarity=0.242  Sum_probs=197.7

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|..+++..|.++.        +|.+|++.+++.++++++++++++||||||.+++        ++|+++|+++|
T Consensus       122 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii  201 (393)
T PRK05764        122 APYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVL  201 (393)
T ss_pred             CCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEE
Confidence            5899999999998887652        3567788899888888899999999999999872        77899999999


Q ss_pred             eeccc--c--C-CCCCCC----CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 024997           65 YDHAY--F--W-PHFAPI----PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAF  135 (259)
Q Consensus        65 ~De~y--~--~-~~~~~~----~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~  135 (259)
                      +||+|  +  . ....++    .+..+++++++||||.+|++|+|+||++++ +++++++.........+++++.|.++.
T Consensus       202 ~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~  280 (393)
T PRK05764        202 SDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGP-KELIKAMSKLQSHSTSNPTSIAQYAAV  280 (393)
T ss_pred             EeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEecC-HHHHHHHHHHHhhcccCCChHHHHHHH
Confidence            99999  2  1 111222    234568999999999999999999999998 799999998887777889999999999


Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-------chH
Q 024997          136 KLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-------EDK  208 (259)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  208 (259)
                      .+++.     .++++.+.++.++++++.+.+.|+++++             +....+++++|+|++++..       +.+
T Consensus       281 ~~l~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~g-------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  342 (393)
T PRK05764        281 AALNG-----PQDEVEEMRQAFEERRDLMVDGLNEIPG-------------LECPKPEGAFYVFPNVSKLLGKSITDSLE  342 (393)
T ss_pred             HHHcC-----ChHHHHHHHHHHHHHHHHHHHHHhhCCC-------------CcccCCCcceEEEEecccccccccCCHHH
Confidence            98872     4567888899999999999999987643             4445788999999998753       145


Q ss_pred             HHHHHHHHcCeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          209 DCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       209 ~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +...+++++||.++||..|+. ++++|||++.+++++++++++|.+++++
T Consensus       343 ~~~~l~~~~gi~v~~g~~f~~-~~~vRis~~~~~~~~~~~i~~l~~~~~~  391 (393)
T PRK05764        343 FAEALLEEAGVAVVPGIAFGA-PGYVRLSYATSLEDLEEGLERIERFLES  391 (393)
T ss_pred             HHHHHHHhCCEEEccccccCC-CCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            666777889999999999976 5899999988999999999999998864

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=100.00  E-value=3.4e-35  Score=259.30  Aligned_cols=242  Identities=16%  Similarity=0.182  Sum_probs=201.4

Q ss_pred             CCCcccchhhhhhccCccc-----ccccChhhhcccCCC-CceE-EEEcCCCCCChhhHH--------HhhcCCCcEEEe
Q 024997            1 MPFYPLYQEQTDYFESVDY-----KFEGEANLWGNASSD-THLV-EFVTAPNNPDGQMNK--------AVLKGPYAKSIY   65 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-----~~~~d~~~l~~~~~~-~~~~-i~i~~p~NPtG~~~~--------~la~~~~~~vi~   65 (259)
                      +|+|+....+++..|.++.     .-++|+++|++.+.. ++++ +++.+.|||||.+++        ++|+++|++||+
T Consensus       186 ~PtY~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIE  265 (459)
T COG1167         186 DPTYPGALQALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIE  265 (459)
T ss_pred             CCCcHHHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEe
Confidence            6999999999999988763     347888999999854 5665 333445799999994        899999999999


Q ss_pred             eccc--c--C-CCCCCCC--CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 024997           66 DHAY--F--W-PHFAPIP--APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLL  138 (259)
Q Consensus        66 De~y--~--~-~~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l  138 (259)
                      ||.|  |  . +...++.  +..++||+++||||++. ||+|+||+++| +++++++...+.....+++.+.|.++..++
T Consensus       266 DD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~-PglRlG~vv~p-~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l  343 (459)
T COG1167         266 DDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLA-PGLRLGYVVAP-PELIEKLLRLKQAADLGPSSLSQAALAAFL  343 (459)
T ss_pred             eCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhcc-cccceeeeeCC-HHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            9998  2  2 2222233  45689999999999996 99999999999 799999999999999999999999999999


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHc
Q 024997          139 KVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAA  217 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~  217 (259)
                      .+   |..+.|+.+.++.++++++.+.+.|+....           ....+..|.+|+|+|++++.. +...+...+.++
T Consensus       344 ~~---G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~-----------~~~~~~~p~gG~flwl~l~~~~~~~~l~~~a~~~  409 (459)
T COG1167         344 LS---GHYDRHLRRLRREYARRRDALLEALAEYLP-----------ELATWTRPEGGLFLWLELPEGIDARELLAAALEK  409 (459)
T ss_pred             Hc---CCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CCeeeecCCceEEEEEEcCCCCCHHHHHHHHHHC
Confidence            84   457889999999999999999999997541           115677999999999999886 555666666678


Q ss_pred             Ceeeec-CCcccCC---CCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          218 KIIGRE-GKKFRAE---ARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       218 gi~~~~-g~~f~~~---~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      |+.+.| |..|..+   .+++||+++. +.+++++++++|.+.+.+
T Consensus       410 gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~  455 (459)
T COG1167         410 GVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLRE  455 (459)
T ss_pred             CCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999 8888853   4689999988 899999999999988764

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.9e-35  Score=250.66  Aligned_cols=234  Identities=20%  Similarity=0.273  Sum_probs=188.2

Q ss_pred             CCCcccchhhhhhccCccc-----ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcC--CCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY-----KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKG--PYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-----~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~--~~~~vi~De~   68 (259)
                      .|+|+.|...++..|.++.     .|..|.+.+.+.+.++++++++||||||||..++     +++..  .+.+||+||+
T Consensus       106 ~Ptf~~Y~~~a~~~g~~~~~v~~~~~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEA  185 (356)
T COG0079         106 EPTFSMYEIAAQLAGAEVVKVPLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEA  185 (356)
T ss_pred             CCChHHHHHHHHhcCCeEEEecccccccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCc
Confidence            5999999999999997652     3778888898888779999999999999999993     33332  2899999999


Q ss_pred             c--cCC-CCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcC
Q 024997           69 Y--FWP-HFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDG  145 (259)
Q Consensus        69 y--~~~-~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~  145 (259)
                      |  |.+ +...+....+++++++||||+||++|+|+||++++ +++++.+.+.+..  ++++.++|.++.++++      
T Consensus       186 Y~eF~~~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~-~~~i~~l~~vr~p--~~v~~~a~~aa~aal~------  256 (356)
T COG0079         186 YIEFSPESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIAN-PELIAALNKVRPP--FNVSSPALAAAIAALR------  256 (356)
T ss_pred             hhhcCCchhhhhccCCCCEEEEEecHHhhhcchhceeeccCC-HHHHHHHHHhcCC--CCCCHHHHHHHHHHcc------
Confidence            9  533 22222235677999999999999999999999999 7999999999876  7799999999999998      


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCC
Q 024997          146 GNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGK  225 (259)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~  225 (259)
                      ..+++++..+.+.+.++++.+.|+.++              +....|..+.|++++++......+.+.|.++||.+|...
T Consensus       257 ~~~~~~~~~~~~~~~r~rl~~~l~~~~--------------~~~v~pS~aNFvlv~~~~~~~~~l~~~L~~~giivR~~~  322 (356)
T COG0079         257 DADYLEESVERIREERERLYAALKALG--------------LFGVFPSQANFVLVRVPDAEAAALAEALLKKGILVRDCS  322 (356)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CCeecCCCCcEEEEECCCccHHHHHHHHHHCCEEEEeCC
Confidence            447899999999999999999999865              121345569999999975213355666667899999976


Q ss_pred             cccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          226 KFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       226 ~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ..+..++++||+++. +++.+..++.|+++++.
T Consensus       323 ~~~~~~~~lRitvgt-~een~~ll~AL~~~~~~  354 (356)
T COG0079         323 SVGLLPGYLRITVGT-PEENDRLLAALREVLKG  354 (356)
T ss_pred             CCCCCCCeEEEEeCC-HHHHHHHHHHHHHHHhc
Confidence            633356899999955 55559999999988764

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=5.1e-35  Score=251.58  Aligned_cols=231  Identities=19%  Similarity=0.273  Sum_probs=180.0

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.+..        +|.+| +.+.+.+.+++++++++|||||||.+++        ++|+++|+++|
T Consensus       100 ~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii  178 (354)
T PRK06358        100 APTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLI  178 (354)
T ss_pred             cCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEE
Confidence            5999999999998887752        34566 4454555567899899999999999993        78889999999


Q ss_pred             eeccc--c--CCCCCC-C--CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Q 024997           65 YDHAY--F--WPHFAP-I--PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKL  137 (259)
Q Consensus        65 ~De~y--~--~~~~~~-~--~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  137 (259)
                      +||+|  |  .+...+ +  .+..+++|+++||||.||++|+|+||++++++.+++.+.+...  .++++.+.|.++..+
T Consensus       179 ~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~  256 (354)
T PRK06358        179 IDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMRE--PWSINTFADLAGQTL  256 (354)
T ss_pred             EeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCC--CCcchHHHHHHHHHH
Confidence            99999  3  221111 1  1345789999999999999999999999865688888887664  467889999999999


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHc
Q 024997          138 LKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAA  217 (259)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  217 (259)
                      ++      ...++.+.++.++++++.+.+.|+++++             +.+..+. |.|+|++++.. .++...++ ++
T Consensus       257 l~------~~~~~~~~~~~~~~~r~~l~~~L~~~~~-------------~~~~~~~-g~f~~~~~~~~-~~~~~~l~-~~  314 (354)
T PRK06358        257 LD------DKEYIKKTIQWIKEEKDFLYNGLSEFKG-------------IKVYKPS-VNFIFFKLEKP-IDLRKELL-KK  314 (354)
T ss_pred             hc------cHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------cEEcCCc-ceEEEEEcCch-HHHHHHHH-HC
Confidence            86      3457788889999999999999987543             3344554 56899998753 45555555 68


Q ss_pred             CeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          218 KIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       218 gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      ||.++||+.|+. +++++||++ .++++.+++++.|.++++
T Consensus       315 gI~v~~~~~f~~~~~~~iRls~-~~~~~~~~l~~~l~~~~~  354 (354)
T PRK06358        315 GILIRSCSNYRGLDENYYRVAV-KSREDNKKLLKALEVILS  354 (354)
T ss_pred             CeEEEECCCCCCCCCCEEEEEe-CCHHHHHHHHHHHHHHhC
Confidence            999999999954 568999998 567778888888887764

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=2.8e-35  Score=251.11  Aligned_cols=226  Identities=12%  Similarity=0.171  Sum_probs=168.6

Q ss_pred             CCCcccchhhhhhccCcccccc-----cChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEeec
Q 024997            1 MPFYPLYQEQTDYFESVDYKFE-----GEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIYDH   67 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~-----~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~De   67 (259)
                      +|+|+.|...++..|.++..+.     .|.+.++   ..+++++++||||||||.+++        ++|+++|++||+||
T Consensus        86 ~P~y~~y~~~~~~~G~~v~~vp~~~~~~~~~~l~---~~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE  162 (332)
T PRK06425         86 EPNFNEYKGYAFTHGIRISALPFNLINNNPEILN---NYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDE  162 (332)
T ss_pred             CCChHHHHHHHHHcCCeEEEEeCCcccCcHHHHh---hcCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEec
Confidence            5999999999999999875443     3333333   247889999999999999993        67889999999999


Q ss_pred             cc--cCCC----CCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Q 024997           68 AY--FWPH----FAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVV  141 (259)
Q Consensus        68 ~y--~~~~----~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~  141 (259)
                      +|  |...    ........+++|+++||||++|++|+|+||++++ +++++.+......  +.++.+.+    .++.. 
T Consensus       163 ~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~-~~li~~l~~~~~~--~~~~~~~~----~~l~~-  234 (332)
T PRK06425        163 AFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATD-DYNMKISRKITEP--WSVCDPAI----DFIRS-  234 (332)
T ss_pred             chhccccccchhHHHHhccCCCEEEEeecHHhcCCchhhheeeecC-HHHHHHHHHcCCC--CccCHHHH----HHHHH-
Confidence            99  3211    1111134468999999999999999999999999 6999998875443  33344332    33332 


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeee
Q 024997          142 LEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIG  221 (259)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~  221 (259)
                        +..+.++++.++.++++++.+.+.|++++              +....+.+|+|+|+.++ .+.++...++ ++||.+
T Consensus       235 --~~~~~~~~~~~~~~~~~r~~l~~~L~~~g--------------~~~~~~~~g~f~~~~~~-~~~~~~~~l~-~~gi~v  296 (332)
T PRK06425        235 --IDLDYVAKHSLDIMENERSYLINNLEAMG--------------FRAAGDPSANFITFMIP-DAHDFYSYLL-KNGILV  296 (332)
T ss_pred             --hhhHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CEECCCCCceEEEEEcC-CHHHHHHHHH-HCCeEE
Confidence              12345667789999999999999998764              44444567889999987 2344554544 689999


Q ss_pred             ecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          222 REGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       222 ~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      +||+.|+. +++++|||++ ++++.+.+++.|++++
T Consensus       297 ~~~~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~  331 (332)
T PRK06425        297 RLLDDYECLGEQYIRIAIR-RRSFNIKLVNALRNFL  331 (332)
T ss_pred             EECCCCCCCCCCEEEEEeC-CHHHHHHHHHHHHHHh
Confidence            99999964 4689999995 5678888888888775

>PRK07550 hypothetical protein; Provisional

Probab=100.00  E-value=8.1e-35  Score=253.29  Aligned_cols=235  Identities=15%  Similarity=0.168  Sum_probs=192.0

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|..+++..|.++.        +|.+|.+.|++.++++++++++++||||||.+++        ++|+++|++||
T Consensus       121 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI  200 (386)
T PRK07550        121 LPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALI  200 (386)
T ss_pred             CCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEE
Confidence            5999999999998888762        3456778898888888888899999999999883        78999999999


Q ss_pred             eeccc--cC--C-CCCCCC---CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 024997           65 YDHAY--FW--P-HFAPIP---APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFK  136 (259)
Q Consensus        65 ~De~y--~~--~-~~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~  136 (259)
                      +||+|  |.  . ...+..   +..+++++++||||.+|++|+|+||++++ +++++++.........+++.+.|.++..
T Consensus       201 ~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~-~~~~~~~~~~~~~~~~~~s~~~q~~~~~  279 (386)
T PRK07550        201 LDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVAS-PARIAEIEKFMDTVAICAPRIGQIAVAW  279 (386)
T ss_pred             EeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecC-HHHHHHHHHHHhhcccCCCcHHHHHHHH
Confidence            99999  31  1 111111   23467999999999999999999999999 6999999988877778889999999999


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC--C-chHHHHHH
Q 024997          137 LLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--E-EDKDCYGI  213 (259)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~l  213 (259)
                      +++.     .++++++.++.++++++.+.+.|+.+.+             +. ..+.+|+|+|++++.  . +.+++..+
T Consensus       280 ~l~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------------~~-~~~~g~~~~~~~~~~~~~~~~~l~~~l  340 (386)
T PRK07550        280 GLPN-----LADWRAGNRAEIARRRDAFRAVFARLPG-------------WE-LLASGAYFAYVRHPFPDRPSREVARRL  340 (386)
T ss_pred             Hhcc-----HHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------ce-eCCCceEEEEecCCCCCCCHHHHHHHH
Confidence            9873     4567888889999999999999987532             22 246789999999874  2 35666667


Q ss_pred             HHHcCeeeecCCcccC-CCCeEEEEeec-ChhhHHHHHHHHHHH
Q 024997          214 LKAAKIIGREGKKFRA-EARFVRLSLLK-SQDDFDLLLHRLDEL  255 (259)
Q Consensus       214 l~~~gi~~~~g~~f~~-~~~~~Ris~~~-~~~~~~~~~~~l~~~  255 (259)
                      ++++||.++||..|+. +.+++||+++. +++++++++++|.++
T Consensus       341 ~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~  384 (386)
T PRK07550        341 AKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF  384 (386)
T ss_pred             HHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence            7889999999999975 46899999986 889999999999875

>PRK07568 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.5e-34  Score=252.53  Aligned_cols=239  Identities=18%  Similarity=0.208  Sum_probs=190.1

Q ss_pred             CCCcccchhhhhhccCcccc--------cc-cChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEE
Q 024997            1 MPFYPLYQEQTDYFESVDYK--------FE-GEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKS   63 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~--------~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~v   63 (259)
                      +|+|+.|...++..|.....        |. .+++.|++.++++++++++++||||||.+++        ++|+++|+++
T Consensus       119 ~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~i  198 (397)
T PRK07568        119 EPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFL  198 (397)
T ss_pred             cCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEE
Confidence            58999999988888876532        22 2357788888888999999999999999872        7889999999


Q ss_pred             Eeeccc--c--CC-CCCCCC---CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 024997           64 IYDHAY--F--WP-HFAPIP---APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAF  135 (259)
Q Consensus        64 i~De~y--~--~~-~~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~  135 (259)
                      |+||+|  |  .+ ...++.   ...+++++++||||.||++|+|+||++++++++++.+...... .++++.+.|.++.
T Consensus       199 i~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~~~~  277 (397)
T PRK07568        199 ISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQA-RLSPPTLEQIGAA  277 (397)
T ss_pred             EEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhhc-cCCCCcHHHHHHH
Confidence            999999  3  22 122222   2357899999999999999999999998656888887665442 4678999999999


Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCc-hHHHHHHH
Q 024997          136 KLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREE-DKDCYGIL  214 (259)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll  214 (259)
                      .+++.     .+.++++.++.++++++.+.+.|+++++             +.+..|++|+|+|++++..+ .++...++
T Consensus       278 ~~l~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------------~~~~~p~g~~~~~~~l~~~~~~~~~~~l~  339 (397)
T PRK07568        278 ALLDT-----PESYFDEVREEYKKRRDILYEELNKIPG-------------VVCEKPKGAFYIIAKLPVDDAEDFAKWLL  339 (397)
T ss_pred             HHhhC-----CHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------ceecCCCcceEEEEecCCCCHHHHHHHHH
Confidence            99973     4678888999999999999999987543             44567889999999997543 45556666


Q ss_pred             HH-----cCeeeecCCcccC----CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          215 KA-----AKIIGREGKKFRA----EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       215 ~~-----~gi~~~~g~~f~~----~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ++     +||.+.||..|+.    +++++|||++.+++++++++++|.+++++
T Consensus       340 ~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~~~~~~~~~~~~l~~~l~~  392 (397)
T PRK07568        340 TDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNEEDLKRAMEILKEALEK  392 (397)
T ss_pred             hhcccccceEEEeCchHhcCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            54     6999999999852    35799999988889999999999998764

>PRK09265 aminotransferase AlaT; Validated

Probab=100.00  E-value=1.8e-34  Score=252.41  Aligned_cols=239  Identities=16%  Similarity=0.211  Sum_probs=182.2

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|....        +|.+|++++++.+++++++++++|||||||.+++        ++|+++|++||
T Consensus       126 ~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii  205 (404)
T PRK09265        126 APDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIF  205 (404)
T ss_pred             CCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEE
Confidence            5999999999988876542        3567888899888888999999999999999883        77899999999


Q ss_pred             eeccc--c--CC-CCCCCC--CCCCCeEEEeccccccCCCcceEEEEEec-CHH----HHHHHHHhhhhhcCCCCHHHHH
Q 024997           65 YDHAY--F--WP-HFAPIP--APADEELMIFTISKLTGHAGSRFGWAVIK-DEA----VYQRMSAYISLNTMGVSRECQL  132 (259)
Q Consensus        65 ~De~y--~--~~-~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~-~~~----~~~~~~~~~~~~~~~~~~~~q~  132 (259)
                      +||+|  |  .. ...++.  ....++++++||||+||++|+|+||++++ +++    +++.+... .....+++.+.|.
T Consensus       206 ~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~  284 (404)
T PRK09265        206 ADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDML-ASMRLCANVPAQH  284 (404)
T ss_pred             EehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHHH-hccccCCCcHHHH
Confidence            99999  2  22 222322  12336899999999999999999999963 244    33333322 2235678899999


Q ss_pred             HHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-----
Q 024997          133 RAFKLLKVVLEDGGNN--IFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-----  205 (259)
Q Consensus       133 ~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  205 (259)
                      ++..++..     .+.  ...+..+.+.++++.+.+.|+.+++             +.+..|++|+|+|++++..     
T Consensus       285 ~~~~~l~~-----~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~-------------~~~~~p~~g~~l~~~~~~~~~~~~  346 (404)
T PRK09265        285 AIQTALGG-----YQSINELILPGGRLYEQRDRAWELLNAIPG-------------VSCVKPKGALYAFPKLDPKVYPIH  346 (404)
T ss_pred             HHHHHhcC-----chhHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------CcccCCCcceEEEEEecccccCCC
Confidence            99888862     221  1212234677788888888876543             4456889999999998642     


Q ss_pred             -chHHHHHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          206 -EDKDCYGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       206 -~~~~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                       +.+.+.+++.++||.++||+.|+. +++++|++++.+.+++++++++|++++++
T Consensus       347 ~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~~~e~l~~~l~rl~~~l~~  401 (404)
T PRK09265        347 DDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEAIGRIGRFLSG  401 (404)
T ss_pred             CHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence             346678888899999999999974 46899999977899999999999998864

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=100.00  E-value=4.6e-35  Score=238.74  Aligned_cols=256  Identities=58%  Similarity=1.089  Sum_probs=203.6

Q ss_pred             CCCcccchhhhhhccCcccccccChhhhcccCCCCceEEEEcCCCCCChhhHHHhhcCCCcEEEeeccccCCCCCCCCCC
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAYFWPHFAPIPAP   80 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~la~~~~~~vi~De~y~~~~~~~~~~~   80 (259)
                      .|.||.|......+......|..|.....+.-++.+-+=++++||||.|.+-..+.+..+..+|-|-+||||++.++...
T Consensus       103 aPYY~~Y~~qt~~f~s~~y~w~Gda~~~~~~~~~~~~IElVTSPNNPDG~lr~~V~~g~~~k~I~D~AYYWPhyTpI~~~  182 (363)
T PF04864_consen  103 APYYSSYPEQTDFFDSRLYKWAGDASNFKNSDNPSPYIELVTSPNNPDGQLREAVLNGSSGKVIHDLAYYWPHYTPITAP  182 (363)
T ss_dssp             SS--CHHHHHCCCT-BTTEEEEEECCCGTT-S-CCGEEEEEESS-TTT------SSTTTEEEEEEE-TT-STTTS---S-
T ss_pred             CCCccchHHHHHhccccCccccccHHhhccCCCCCCeEEEEeCCCCCcccccchhcCCCCcceeeeeeeecccccccCCC
Confidence            49999999999998888889999987776333457888899999999999988888888899999999999999999988


Q ss_pred             CCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCc-----chHHHHHH
Q 024997           81 ADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGN-----NIFEFGYN  155 (259)
Q Consensus        81 ~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~-----~~~~~~~~  155 (259)
                      .+.+|+++|+||.-|.+|.|+||++..|+++.++|..+....+.|+|.-.|.-++.+|+...++...     ++++-.++
T Consensus       183 aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~  262 (363)
T PF04864_consen  183 ADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYS  262 (363)
T ss_dssp             B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHH
T ss_pred             CCCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999988776322     57888999


Q ss_pred             HHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEE
Q 024997          156 TMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVR  235 (259)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~R  235 (259)
                      .|++|++++.+.++.-..+.+..+.++.|+|++.....++.|.|++++..+.+.+...|+++||..+.|..|+.++.++|
T Consensus       263 ~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed~DC~~~l~~~~I~tr~G~~fga~~ryVR  342 (363)
T PF04864_consen  263 TMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREEDEDCYAVLREAKIITRSGVLFGADSRYVR  342 (363)
T ss_dssp             HHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCGGSSHHHHHHCTTEEEEEGGGGTS-TTEEE
T ss_pred             HHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCcccccHHHHHHhCCcccCCCCccCCCCCeEE
Confidence            99999999999999999999999999999999999999999999999976667888889999999999999999999999


Q ss_pred             EEeecChhhHHHHHHHHHHHh
Q 024997          236 LSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       236 is~~~~~~~~~~~~~~l~~~l  256 (259)
                      ||+-.++++++.+++||..++
T Consensus       343 lSml~~~d~Fd~l~~rL~~lv  363 (363)
T PF04864_consen  343 LSMLKRDDDFDQLLERLSKLV  363 (363)
T ss_dssp             EESSS-HHHHHHHHHHHHCCH
T ss_pred             EeccCCHHHHHHHHHHHHhhC
Confidence            999889999999999998653

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=100.00  E-value=1.5e-34  Score=249.03  Aligned_cols=227  Identities=16%  Similarity=0.175  Sum_probs=181.2

Q ss_pred             CCCcccchhhhhhccCcccccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEeeccc--c
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIYDHAY--F   70 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~De~y--~   70 (259)
                      +|+|+.|...++..|.+...+. +.+.++   .++++++++++||||||.+++        ++|+++|+++|+||+|  |
T Consensus       112 ~p~y~~~~~~~~~~g~~~~~v~-~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~  187 (357)
T TIGR03539       112 ELAYPTYEVGALLAGATPVAAD-DPTELD---PVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLEL  187 (357)
T ss_pred             CCCcHHHHHHHHhcCCEEeccC-ChhhcC---ccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhh
Confidence            6999999999998888775542 233332   357899999999999999883        7889999999999999  3


Q ss_pred             --CCCC-CCCC-----CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHH
Q 024997           71 --WPHF-APIP-----APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVL  142 (259)
Q Consensus        71 --~~~~-~~~~-----~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~  142 (259)
                        .+.. ..+.     ...+++++++||||.|+++|+|+||++++ +++++.+.+.......+++.+.|.++..+++   
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---  263 (357)
T TIGR03539       188 GWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGD-PALVAELLTVRKHAGLMVPAPVQAAMVAALG---  263 (357)
T ss_pred             ccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEecC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHcC---
Confidence              2211 1121     12457999999999999999999999998 7999999887776678899999999988886   


Q ss_pred             hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeee
Q 024997          143 EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGR  222 (259)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~  222 (259)
                         .+.++.+.++.++++++.+.+.|+..+              +.+.++++|+|+|++++.. ...+.+.|.++||.++
T Consensus       264 ---~~~~~~~~~~~~~~~~~~~~~~L~~~g--------------~~~~~p~~~~~~~~~~~~~-~~~~~~~l~~~gV~v~  325 (357)
T TIGR03539       264 ---DDGHVAEQKARYAARRAQLKPALEKAG--------------FRIDHSEAGLYLWATRGED-AWDTVDRLAELGILVA  325 (357)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHHHHcC--------------CCCcCCCccEEEEEECCCC-HHHHHHHHHhCCEEEC
Confidence               345677788999999999999998753              3345788999999998653 4445556678999999


Q ss_pred             cCCcccC-CCCeEEEEeecChhhHHHHHHHHH
Q 024997          223 EGKKFRA-EARFVRLSLLKSQDDFDLLLHRLD  253 (259)
Q Consensus       223 ~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~  253 (259)
                      ||..|+. +.+++|||++.+++++++++++|.
T Consensus       326 pg~~f~~~~~~~iRis~~~~~~~i~~~~~~l~  357 (357)
T TIGR03539       326 PGDFYGPAGSQHVRVALTATDERIAAAVARLT  357 (357)
T ss_pred             CccccCCCCCCeEEEEecCCHHHHHHHHHhhC
Confidence            9998864 468999999888899999998873

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-34  Score=249.73  Aligned_cols=234  Identities=18%  Similarity=0.232  Sum_probs=179.0

Q ss_pred             CCCcccchhhhhhccCccc---------ccccChhhhcccC-CCCceEEEEcCCCCCChhhHH-----Hhhc--CCCcEE
Q 024997            1 MPFYPLYQEQTDYFESVDY---------KFEGEANLWGNAS-SDTHLVEFVTAPNNPDGQMNK-----AVLK--GPYAKS   63 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~---------~~~~d~~~l~~~~-~~~~~~i~i~~p~NPtG~~~~-----~la~--~~~~~v   63 (259)
                      +|+|+.|...++..|.++.         +|.+|++++.+.+ ++++++++++|||||||.+++     ++++  +.+++|
T Consensus       108 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~i  187 (364)
T PRK04781        108 PPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALV  187 (364)
T ss_pred             CCChHHHHHHHHHcCCEEEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEE
Confidence            5899999988888887652         2445666665444 678899999999999999993     3433  247899


Q ss_pred             Eeeccc--cC--CCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q 024997           64 IYDHAY--FW--PHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLK  139 (259)
Q Consensus        64 i~De~y--~~--~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~  139 (259)
                      |+||+|  |.  +......+..+++++++||||+||++|+|+||++++ +++++.+.+....  ++++.+.|.++..+++
T Consensus       188 I~Deay~~f~~~~~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~-~~l~~~l~~~~~~--~~~~~~~~~~a~~~l~  264 (364)
T PRK04781        188 VVDEAYGEFSDVPSAVGLLARYDNLAVLRTLSKAHALAAARIGSLIAN-AELIAVLRRCQAP--YPVPTPCAALAEQALS  264 (364)
T ss_pred             EEeCcchhhcCCcchHHHHhhCCCEEEEecChhhcccccceeeeeeCC-HHHHHHHHhccCC--CCCCHHHHHHHHHHHh
Confidence            999999  42  222222245578999999999999999999999999 7999999987764  6788999999888887


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCe
Q 024997          140 VVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKI  219 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi  219 (259)
                      .    ....+..+.++.++++++.+.+.|+.+++             +....|.+|+|+|++++.  .+.+.+.+.++||
T Consensus       265 ~----~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-------------~~~~~p~~g~f~~~~~~~--~~~~~~~l~~~gI  325 (364)
T PRK04781        265 A----PALAVTARRVAEVRAERERLHAALAQLPG-------------VRRVYPSQGNFLLVRFDD--AEAAFQALLAAGV  325 (364)
T ss_pred             c----ccHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CCeECCCCCcEEEEEcCC--HHHHHHHHHHCCe
Confidence            3    12245566677889999999999987643             322357789999999873  4556666778999


Q ss_pred             eeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          220 IGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       220 ~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      .+++|..|+..++++||+++ .+++.+.+++.|+++..
T Consensus       326 ~v~~~~~~~~~~~~~Ris~~-~~~~~~~l~~al~~~~~  362 (364)
T PRK04781        326 VVRDQRAAPRLSDALRITLG-TPEQNDRVLAALQRTQA  362 (364)
T ss_pred             EEeeCCCCCCCCCeEEEeCC-CHHHHHHHHHHHHHHHh
Confidence            99999887655689999995 46777777777776543

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=3.2e-34  Score=246.92  Aligned_cols=232  Identities=19%  Similarity=0.281  Sum_probs=176.3

Q ss_pred             CCCcccchhhhhhccCcccc--------cccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDYK--------FEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~--------~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++..        |.+|. ++.+.+.+++++++++|||||||.+++        ++|+++|++||
T Consensus       101 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~-~~~~~~~~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii  179 (356)
T PRK08056        101 TPGFAEYRRALQQVGCEIRRYSLREADGWQLTD-AILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALI  179 (356)
T ss_pred             CCCcHHHHHHHHHcCCeEEEEecccccCCCccH-HHHHhccCCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEE
Confidence            59999999999999887632        34442 344556678899999999999999983        67889999999


Q ss_pred             eeccc--cCCC---CCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q 024997           65 YDHAY--FWPH---FAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLK  139 (259)
Q Consensus        65 ~De~y--~~~~---~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~  139 (259)
                      +||+|  |...   ..+.....+++++++||||.||++|+|+||++++++++++.+.....  .++++.+.|.++..+++
T Consensus       180 ~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~~--~~~~~~~~~~~a~~~l~  257 (356)
T PRK08056        180 LDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQM--PWSINAFAALAGEVILQ  257 (356)
T ss_pred             EecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCC--CCchhHHHHHHHHHHhC
Confidence            99999  3211   11211334689999999999999999999999864678888876543  36678888888888886


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCe
Q 024997          140 VVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKI  219 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi  219 (259)
                            ...+..+.++.++++++.+.+.|+.+++             +.+. +.+++|+|++++..+.++...++ ++||
T Consensus       258 ------~~~~~~~~~~~~~~~r~~l~~~L~~~~~-------------~~~~-~~~~~~~~~~~~~~~~~~~~~l~-~~gI  316 (356)
T PRK08056        258 ------DRAYQQATWQWLAEEGARFYQALCALPL-------------LTVW-PGRANYLFLRCERPDIDLQRALL-TQRI  316 (356)
T ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------cEEc-CCCCcEEEEEcCCChHHHHHHHH-HCCe
Confidence                  3456778889999999999999987643             3333 44689999998754445555555 6899


Q ss_pred             eeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          220 IGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       220 ~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      .+++|..|.. +.+++||+++ ++++.+.+++.|+++++
T Consensus       317 ~v~~~~~f~~~~~~~iRis~~-~~~~~~~l~~~l~~~~~  354 (356)
T PRK08056        317 LIRSCANYPGLDSRYYRVAIR-SAAENERLLAALRNVLT  354 (356)
T ss_pred             EEEECCCCCCCCCCEEEEEEc-CHHHHHHHHHHHHHHHc
Confidence            9999999953 4579999995 56777777777777654

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=100.00  E-value=6.1e-34  Score=245.54  Aligned_cols=227  Identities=15%  Similarity=0.178  Sum_probs=172.0

Q ss_pred             CCCcccchhhhhhccCccccccc-----------ChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEG-----------EANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~-----------d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++..+..           +++.+++. .+++++++++|||||||.+++     ++++++++ +|
T Consensus       104 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~I  181 (360)
T PRK07392        104 TPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQ-LTPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VV  181 (360)
T ss_pred             CCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHh-ccCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EE
Confidence            69999999999999988744332           23333322 246789999999999999994     78888885 66


Q ss_pred             eeccc--c--CCCCCCC---CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Q 024997           65 YDHAY--F--WPHFAPI---PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKL  137 (259)
Q Consensus        65 ~De~y--~--~~~~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  137 (259)
                      +||+|  |  .....+.   ....+++++++||||.||++|+|+||++++ +++++.+.....  .++++.+.|.++..+
T Consensus       182 iDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~-~~~~~~~~~~~~--~~~~s~~~q~~~~~~  258 (360)
T PRK07392        182 VDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAH-PDRLQRWQQWRD--PWPVNGLAAAAAIAA  258 (360)
T ss_pred             EECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCC-HHHHHHHHhhCC--CCCCCHHHHHHHHHH
Confidence            69999  3  1111121   134568999999999999999999999999 699998876553  477899999999999


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHc
Q 024997          138 LKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAA  217 (259)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  217 (259)
                      ++.      ..+.+..++.++++++.+.+.|+.+++             +.. .+.+++|+|++++..+.++...+++++
T Consensus       259 l~~------~~~~~~~~~~~~~~r~~l~~~L~~~~~-------------~~~-~~~~~~fl~~~~~~~~~~l~~~ll~~~  318 (360)
T PRK07392        259 LAD------RDFQQQTWAWLPPAREALFQGLASLPG-------------LTP-LPSAANFLLVQSQGSALQLQEKLLQQH  318 (360)
T ss_pred             hcc------HHHHHHHHHHHHHHHHHHHHHHHhCCC-------------cEE-CCCCCCEEEEEcCCCHHHHHHHHHhhC
Confidence            872      346666677889999999999987643             333 347899999998754456666777888


Q ss_pred             CeeeecCCcccC-CCCeEEEEeecC--hhhHHHHHHHH
Q 024997          218 KIIGREGKKFRA-EARFVRLSLLKS--QDDFDLLLHRL  252 (259)
Q Consensus       218 gi~~~~g~~f~~-~~~~~Ris~~~~--~~~~~~~~~~l  252 (259)
                      ||.++||..|+. +++++||+++.+  .+++.++++++
T Consensus       319 gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~l~~al~~~  356 (360)
T PRK07392        319 RILIRDCLSFPELGDRYFRVAVRTEAENQRLLEALAAI  356 (360)
T ss_pred             CEEEEeCCCCCCCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence            999999999975 468999999763  24566666554

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=100.00  E-value=1.8e-34  Score=249.18  Aligned_cols=232  Identities=21%  Similarity=0.313  Sum_probs=189.4

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCC------CceEEEEcCCCCCChhhHH--------HhhcC
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSD------THLVEFVTAPNNPDGQMNK--------AVLKG   58 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~~--------~la~~   58 (259)
                      +|+|+.|...++..|.++.        .|.+|++.|++.+++      +++++++++||||||.+++        ++|++
T Consensus       100 ~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~  179 (363)
T PF00155_consen  100 DPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELARE  179 (363)
T ss_dssp             ESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHH
T ss_pred             CCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcc
Confidence            5999999999999998863        457889999988754      5789999999999999994        56999


Q ss_pred             CCcEEEeeccc--c--CCC-CCC-CC--CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHH
Q 024997           59 PYAKSIYDHAY--F--WPH-FAP-IP--APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSREC  130 (259)
Q Consensus        59 ~~~~vi~De~y--~--~~~-~~~-~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (259)
                      +|++||+||+|  +  ... ..+ ..  ....++++++|+||.||++|+|+||++++ +++++.+........  .+.+.
T Consensus       180 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~-~~~~~~l~~~~~~~~--~~~~~  256 (363)
T PF00155_consen  180 YNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAP-PELIERLRRFQRSGL--SSSPM  256 (363)
T ss_dssp             TTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEE-HHHHHHHHHHHHHTT--SSHHH
T ss_pred             cccceeeeeceeccccCCCccCcccccccccccceeeeeccccccccccccccccch-hhhhhhhhhcccccc--ccchh
Confidence            99999999999  2  211 111 11  34445999999999999999999999998 799999998887643  38888


Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHH
Q 024997          131 QLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKD  209 (259)
Q Consensus       131 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  209 (259)
                      |.++..++.....  ..+++.+.++.++++++.+.+.|++.+              +.+..+++|+|+|+.++.. +.++
T Consensus       257 ~~~~~~~l~~~~~--~~~~~~~~~~~l~~~~~~l~~~L~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l  320 (363)
T PF00155_consen  257 QAAAAAALSDPEL--VEKWLEELRERLRENRDLLREALEEIG--------------ITVLPPEAGFFLWVRLDPNDAEEL  320 (363)
T ss_dssp             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTT--------------SEEEHHSBSSEEEEEESHHHHHHH
T ss_pred             hHHHHHhhhcccc--cccccccchhhHHHHHHHHHHHHHHhh--------------hheeeccCccEEEEEcccchHHHH
Confidence            9988888885310  123889999999999999999998764              6667888999999998765 4577


Q ss_pred             HHHHHHHcCeeeecCCcccCCCCeEEEEe-ecChhhHHHHHHHH
Q 024997          210 CYGILKAAKIIGREGKKFRAEARFVRLSL-LKSQDDFDLLLHRL  252 (259)
Q Consensus       210 ~~~ll~~~gi~~~~g~~f~~~~~~~Ris~-~~~~~~~~~~~~~l  252 (259)
                      ..++++++||.++||..|+. ++++|+++ ..+++++++++++|
T Consensus       321 ~~~L~~~~gi~v~pg~~~~~-~~~iRi~~a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  321 AQELLEEYGILVRPGSYFGV-PGYIRISLASHSEEDLEEALERL  363 (363)
T ss_dssp             HHHHHHHHTEEEEEGGGGTS-TTEEEEEGGCSCHHHHHHHHHHH
T ss_pred             HHHHHHhCCEEEEecCCCCC-CCEEEEEeccCCHHHHHHHHhhC
Confidence            77878767999999999998 79999999 44999999999986

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PTZ00376 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.5e-34  Score=251.43  Aligned_cols=234  Identities=13%  Similarity=0.059  Sum_probs=177.0

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCC---CCceEEEEcCCCCCChhhHH--------HhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASS---DTHLVEFVTAPNNPDGQMNK--------AVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~~--------~la~~~~~   61 (259)
                      +|+|+.|..+++..|.++.        .|++|++.+++.+.   +++++++++|||||||.+++        ++|+++|+
T Consensus       131 ~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~  210 (404)
T PTZ00376        131 NPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNL  210 (404)
T ss_pred             CCCchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCc
Confidence            6999999999999998762        36778888888773   45688888999999999993        78999999


Q ss_pred             EEEeeccc--c--CC---CCCCC---CCCCCCeEEEeccccccCCCcceEEEE---EecCHHHHHHHH----HhhhhhcC
Q 024997           62 KSIYDHAY--F--WP---HFAPI---PAPADEELMIFTISKLTGHAGSRFGWA---VIKDEAVYQRMS----AYISLNTM  124 (259)
Q Consensus        62 ~vi~De~y--~--~~---~~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i---~~~~~~~~~~~~----~~~~~~~~  124 (259)
                      +||+||+|  |  ..   ...++   ....+++|+++||||.|+++|+|+||+   +++ +++++.+.    ........
T Consensus       211 ~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~-~~~~~~l~~~~~~~~~~~~~  289 (404)
T PTZ00376        211 IPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCAN-KEEAANVLSQLKLIIRPMYS  289 (404)
T ss_pred             EEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCC-HHHHHHHHHHHHHHHhhhcC
Confidence            99999999  3  11   11111   223458999999999999999999998   456 67665543    33333345


Q ss_pred             CCCHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecC
Q 024997          125 GVSRECQLRAFKLLKVVL-EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCE  203 (259)
Q Consensus       125 ~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (259)
                      +++.+.|.++..++++.. .....+++++.+++++++++.+.+.|++++. .         ..+.+..|++|+|+|++++
T Consensus       290 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~---------~~~~~~~p~gg~f~~~~~~  359 (404)
T PTZ00376        290 SPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGS-P---------GDWEHIINQIGMFSFTGLT  359 (404)
T ss_pred             CCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C---------CcccccccCceEEEecCCC
Confidence            567899999999887310 0001123556677899999999999987531 0         0034457899999999884


Q ss_pred             CCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEee-cChhhHHHHHHHHHHHhh
Q 024997          204 REEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL-KSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       204 ~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~-~~~~~~~~~~~~l~~~l~  257 (259)
                         .+++..+++++||.+.||       +  |+|++ .+++++++++++|++++.
T Consensus       360 ---~~~~~~L~~~~~v~v~p~-------~--Ris~~~~~~~~~~~~~~~l~~~~~  402 (404)
T PTZ00376        360 ---KEQVERLIEKYHIYLLDN-------G--RISVAGLTSKNVDYVAEAIHDVVR  402 (404)
T ss_pred             ---HHHHHHHHHhCCEeecCC-------C--eEEEeccCHHhHHHHHHHHHHHHh
Confidence               688889998889999996       1  99997 499999999999998864

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=100.00  E-value=1.4e-33  Score=240.42  Aligned_cols=222  Identities=19%  Similarity=0.224  Sum_probs=172.8

Q ss_pred             CCCcccchhhhhhccCcccccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEeecccc--
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIYDHAYF--   70 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~De~y~--   70 (259)
                      +|+|+.|...++..|.++..+..  +++++.++ ++++++++|||||||.+++        ++|+++|++||+||+|.  
T Consensus        93 ~P~y~~~~~~~~~~g~~~~~v~~--~~~~~~~~-~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~  169 (330)
T PRK05664         93 SPCYAEHAHAWRRAGHQVRELDE--AEVEAALD-SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDN  169 (330)
T ss_pred             CCChHHHHHHHHHcCCeEEEech--hhHhhhhc-CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccC
Confidence            69999999999999998875544  45666553 5677899999999999993        56788999999999993  


Q ss_pred             CC--CCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcc
Q 024997           71 WP--HFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNN  148 (259)
Q Consensus        71 ~~--~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  148 (259)
                      .+  +...+ ...+++++++||||+||++|+|+||++++ +++++.+.+....  +.++.+.|.++..+|+.      ..
T Consensus       170 ~~~~s~~~~-~~~~~vi~~~SfSK~~gl~GlRiG~~v~~-~~l~~~~~~~~~~--~~~~~~~~~~~~~~L~~------~~  239 (330)
T PRK05664        170 TPQHSLAAC-AHRPGLIVLRSFGKFFGLAGARLGFVLAE-PALLRALAELLGP--WTVSGPTRWLAQAALAD------TP  239 (330)
T ss_pred             CCccccccc-ccCCCEEEEeeccccccCCCcceEEEEeC-HHHHHHHHHhcCC--CCCCHHHHHHHHHHHhC------hH
Confidence            22  22222 23468999999999999999999999999 7999999887543  56788999999999972      34


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCC--eeEEEecCCCchHHHHHHHHHcCeeeecCCc
Q 024997          149 IFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSP--AYAWVKCEREEDKDCYGILKAAKIIGREGKK  226 (259)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~  226 (259)
                      +.++.++.++++++.+.+.|+.++              +   .+.+|  +|+|++++  +.+.+.+.|.++||.+++   
T Consensus       240 ~~~~~~~~~~~~r~~l~~~L~~~~--------------~---~~~~~~~~f~~~~~~--~~~~~~~~l~~~gi~v~~---  297 (330)
T PRK05664        240 WQRRQRERLLAASQRLAALLRRHG--------------L---TPAGGCALFQWVRTE--DAAALHEFLARRGILTRL---  297 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC--------------C---cccCCcceEEEEecC--CHHHHHHHHHHCCeEEEE---
Confidence            567788999999999999998753              2   23344  78898875  345566667789999985   


Q ss_pred             ccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          227 FRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       227 f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      |+ ..+++|||++.++++.+++++.|+++.++
T Consensus       298 f~-~~~~iRis~~~~~~~~~~l~~al~~~~~~  328 (330)
T PRK05664        298 FE-QPASLRFGLPADEADWARLDQALLAYRKE  328 (330)
T ss_pred             CC-CCCeEEEECCCCHHHHHHHHHHHHHHHhh
Confidence            54 34799999986667777777777776553

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=7e-34  Score=246.57  Aligned_cols=229  Identities=20%  Similarity=0.236  Sum_probs=178.7

Q ss_pred             CCCcccchhhhhhccCcc------cccccChhhhcccC-CCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVD------YKFEGEANLWGNAS-SDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~------~~~~~d~~~l~~~~-~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~   68 (259)
                      +|+|+.|...++..|.++      ..|.+|+++|++.+ ++++++++++|||||||.+++     ++++.. ++||+||+
T Consensus       134 ~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~Dea  212 (380)
T PLN03026        134 PPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEA  212 (380)
T ss_pred             CCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECc
Confidence            599999999999888775      23678889999888 678999999999999999983     666654 89999999


Q ss_pred             c--cC--CCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 024997           69 Y--FW--PHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLED  144 (259)
Q Consensus        69 y--~~--~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~  144 (259)
                      |  |.  ..........+++++++||||.||++|+|+||++++ +++++.+.+....  ++++.+.|.++.++|+     
T Consensus       213 Y~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~-~~~i~~l~~~~~~--~~~~~~~q~aa~~aL~-----  284 (380)
T PLN03026        213 YIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFP-LSIIEYLWRAKQP--YNVSVAAEVAACAALS-----  284 (380)
T ss_pred             chhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecC-HHHHHHHHHhcCC--CCCCHHHHHHHHHHhh-----
Confidence            9  32  111111134578999999999999999999999999 6999998877653  6788999999999987     


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-CchHHHHHHHHHcCeeeec
Q 024997          145 GGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-EEDKDCYGILKAAKIIGRE  223 (259)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~~~~  223 (259)
                       ..+++++.++.++++++.+.+.|+.++.             + ...|.+++|+|++++. .+...+.+.|.++||.+++
T Consensus       285 -~~~~~~~~~~~~~~~r~~l~~~L~~~~~-------------~-~~~p~~~~f~~~~~~~~~~~~~~~~~l~~~gI~v~~  349 (380)
T PLN03026        285 -NPKYLEDVKNALVEERERLFGLLKEVPF-------------L-EPYPSDANFILCRVTSGRDAKKLKEDLAKMGVMVRH  349 (380)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------C-eECCCCCeEEEEECCCCCCHHHHHHHHHHCCeEEEE
Confidence             3467888899999999999999987652             2 2367789999999874 3334444455578999999


Q ss_pred             CCcccCCCCeEEEEeecChhhHHHHHHHHHHH
Q 024997          224 GKKFRAEARFVRLSLLKSQDDFDLLLHRLDEL  255 (259)
Q Consensus       224 g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~  255 (259)
                      +..++ ..+++|||++. +++.+.+++.|+++
T Consensus       350 ~~~~~-~~~~lRis~~~-~~~~~~l~~al~~~  379 (380)
T PLN03026        350 YNSKE-LKGYIRVSVGK-PEHTDALMEALKQL  379 (380)
T ss_pred             CCCCC-CCCEEEEecCC-HHHHHHHHHHHHHh
Confidence            87633 35799999974 55666666666554

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=4.4e-34  Score=246.20  Aligned_cols=225  Identities=18%  Similarity=0.248  Sum_probs=174.2

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcC--CCcEEEe
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKG--PYAKSIY   65 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~--~~~~vi~   65 (259)
                      +|+|+.|...++..|..+.        +|.++.+.+++.. +++++++++|||||||.+++     ++++.  .+.+||+
T Consensus       113 ~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~  191 (357)
T PRK14809        113 DPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVV  191 (357)
T ss_pred             CCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEE
Confidence            5999999988888776542        3555666665543 35788999999999999993     44433  3789999


Q ss_pred             eccc--cCC--CCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Q 024997           66 DHAY--FWP--HFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVV  141 (259)
Q Consensus        66 De~y--~~~--~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~  141 (259)
                      ||+|  |..  .........+++++++||||.||++|+|+||++++ +++++++.+...  .++++.+.|.++..+++  
T Consensus       192 De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~a~~~l~--  266 (357)
T PRK14809        192 DEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVP-EEWADAYARVNT--PFAASELACRAGLAALD--  266 (357)
T ss_pred             echhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecC-HHHHHHHHHhCC--CCCCCHHHHHHHHHHhC--
Confidence            9999  321  11111134578999999999999999999999999 699999987654  46788999999988886  


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeee
Q 024997          142 LEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIG  221 (259)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~  221 (259)
                          .++++++.++.++++++.+.+.|+...                  .+.+|+|+|+++.  +.+.+.+.++++||.+
T Consensus       267 ----~~~~~~~~~~~~~~~r~~l~~~L~~~~------------------~~~~g~f~~~~~~--~~~~~~~~l~~~gv~v  322 (357)
T PRK14809        267 ----DDEHVERTVETARWAREYIREELDAPT------------------WESAGNFVLAEVG--DASAVAEAAQERGVIV  322 (357)
T ss_pred             ----CHHHHHHHHHHHHHHHHHHHHHhcCcc------------------CCCCCCEEEEECC--CHHHHHHHHHHCCEEE
Confidence                356888888899998888888875311                  2567899999985  3344445567899999


Q ss_pred             ecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          222 REGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       222 ~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      +||+.|+. ++++||+++ +++++++++++|+++++
T Consensus       323 ~~g~~f~~-~~~iRls~~-~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        323 RDCTSFGL-PECIRITCG-TREETERAVEVLNEVLA  356 (357)
T ss_pred             EECccCCC-CCeEEEecC-CHHHHHHHHHHHHHHhc
Confidence            99999975 489999996 47899999999999875

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=6.5e-34  Score=246.49  Aligned_cols=227  Identities=17%  Similarity=0.181  Sum_probs=173.1

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCC----CCceEEEEcCCCCCChhhHH-----Hhhc-CCCcEE
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASS----DTHLVEFVTAPNNPDGQMNK-----AVLK-GPYAKS   63 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~----~~~~~i~i~~p~NPtG~~~~-----~la~-~~~~~v   63 (259)
                      +|+|+.|..+++..|.++.       .|++|+++|++.++    +++++++++|||||||.+++     ++++ .+|++|
T Consensus       123 ~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~i  202 (374)
T PRK02610        123 EPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILV  202 (374)
T ss_pred             CCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEE
Confidence            6999999999999988752       37888899988874    57899999999999999994     2322 248999


Q ss_pred             Eeeccc--cCCCCCCCC--CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q 024997           64 IYDHAY--FWPHFAPIP--APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLK  139 (259)
Q Consensus        64 i~De~y--~~~~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~  139 (259)
                      |+||+|  |... ....  ...+++|+++||||+||++|+|+||++++ +++++.+.....  .++++.+.|.++..+++
T Consensus       203 I~De~Y~~~~~~-~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~-~~l~~~l~~~~~--~~~~~~~~q~a~~~~l~  278 (374)
T PRK02610        203 VIDEAYFEFSQT-TLVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGH-PELIAVLEKVRL--PYNLPSFSQLAAQLALE  278 (374)
T ss_pred             EEeccccccCcc-chHHHHhcCCCEEEEEecchhccCcccceeeeecC-HHHHHHHHHhcC--CCCCCHHHHHHHHHHhc
Confidence            999999  3211 1111  23457899999999999999999999998 799999988764  36688999999988887


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcC
Q 024997          140 VVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAK  218 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~g  218 (259)
                      .     .+.+.+..++.++ +++.+.+.|+.+++             +.. .|++|+|+|++++.. +...+.+.+.++|
T Consensus       279 ~-----~~~~~~~~~~~~~-~r~~l~~~L~~~~~-------------~~~-~p~~g~f~~~~l~~~~~~~~~~~~l~~~g  338 (374)
T PRK02610        279 H-----RQELLAAIPEILQ-ERDRLYQALQELPQ-------------LRV-WPSAANFLYLRLSQDAALAALHQALKAQG  338 (374)
T ss_pred             C-----HHHHHHHHHHHHH-HHHHHHHHHHhCCC-------------cEe-CCCcceEEEEeCCCCCCHHHHHHHHHHCC
Confidence            3     4455555554444 46777777876542             332 478899999999753 4455566677899


Q ss_pred             eeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          219 IIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       219 i~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      |.++++      .+++|||++. ++++++++++|++++++
T Consensus       339 i~v~~~------~~~lRls~~~-~~~~~~~l~~l~~~l~~  371 (374)
T PRK02610        339 TLVRHT------GGGLRITIGT-PEENQRTLERLQAALTQ  371 (374)
T ss_pred             EEEEeC------CCeEEEeCCC-HHHHHHHHHHHHHHHhh
Confidence            999863      3789999975 56789999999998753

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=1.2e-33  Score=241.49  Aligned_cols=221  Identities=16%  Similarity=0.179  Sum_probs=171.0

Q ss_pred             CCCcccchhhhhhccCcccccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----H---hhcCCCcEEEeeccc--c
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----A---VLKGPYAKSIYDHAY--F   70 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~---la~~~~~~vi~De~y--~   70 (259)
                      +|+|+.|...++..|.++..+..|.+.+    .+..+++++||||||||.+++     +   .|.+++.++|+||+|  |
T Consensus       100 ~P~y~~y~~~~~~~g~~~~~v~~~~~~~----~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~  175 (339)
T PRK06959        100 PLAYSEYAPAFARHGHRVVPLDEAADTL----PAALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADT  175 (339)
T ss_pred             CCCcHHHHHHHHHCCCEEEeecccchhc----cccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccC
Confidence            5999999999999998887665554333    234568899999999999983     3   355678999999999  3


Q ss_pred             C--CCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcc
Q 024997           71 W--PHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNN  148 (259)
Q Consensus        71 ~--~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  148 (259)
                      .  ++...+. ..+++++++||||+||++|+|+||++++ +++++.+.+....  ++++.+.|.++.++++      ...
T Consensus       176 ~~~~s~~~~~-~~~~vi~l~SfSK~~gl~GlRiGy~v~~-~~li~~l~~~~~~--~~vs~~~q~a~~~~L~------~~~  245 (339)
T PRK06959        176 LPAASLAAHT-DRPGLVVLRSVGKFFGLAGVRAGFVLAA-PALLAALRDALGA--WTVSGPARHAVRAAFA------DAA  245 (339)
T ss_pred             CCcccchhcc-CCCCEEEEecChhhcCCcchheEEEecC-HHHHHHHHHhcCC--CCCcHHHHHHHHHHhC------cHH
Confidence            2  1222221 2467999999999999999999999999 7999999987654  6688999999999997      345


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCccc
Q 024997          149 IFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFR  228 (259)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~  228 (259)
                      +.++.++.++++++.+.+.|++++              +...  .+++|+|++++  +...+.+.|.++||.++.   |+
T Consensus       246 ~~~~~~~~~~~~r~~l~~~L~~~g--------------~~~~--~~~~f~~~~~~--~~~~l~~~l~~~GI~vr~---~~  304 (339)
T PRK06959        246 WQAAMRERLAADGARLAALLRAHG--------------FAVH--ATPLFSWTDDP--RAAALHAALARRGIWTRY---FA  304 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC--------------CCcc--CcceEEEEeCC--CHHHHHHHHHhCCeEEEE---CC
Confidence            778889999999999999999764              2222  35799999886  344455566678999985   44


Q ss_pred             CCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          229 AEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       229 ~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      . .+++|||++.++++++.+++.|++++.
T Consensus       305 ~-~~~lRisi~~~~~e~~~l~~al~~~~~  332 (339)
T PRK06959        305 P-PPSVRFGLPADEAEWQRLEDALAECVP  332 (339)
T ss_pred             C-CCeEEEECCCCHHHHHHHHHHHHHHHH
Confidence            3 479999996677788888888777653

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.2e-34  Score=247.41  Aligned_cols=227  Identities=19%  Similarity=0.236  Sum_probs=175.4

Q ss_pred             CCCcccchhhhhhccCcc------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----Hh---hcCCCcEEEee
Q 024997            1 MPFYPLYQEQTDYFESVD------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AV---LKGPYAKSIYD   66 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~l---a~~~~~~vi~D   66 (259)
                      +|+|+.|...++..|.++      .+|.+|++++++.+ ++++++++||||||||.+++     ++   |++ +.+||+|
T Consensus       106 ~P~y~~y~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivD  183 (351)
T PRK01688        106 PPTYGMYSVSAETIGVEIRTVPTLDNWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRG-KAIVVAD  183 (351)
T ss_pred             CCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEE
Confidence            599999999999988775      24778888898877 57899999999999999993     33   343 6889999


Q ss_pred             ccc--cCCC--CCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHH
Q 024997           67 HAY--FWPH--FAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVL  142 (259)
Q Consensus        67 e~y--~~~~--~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~  142 (259)
                      |+|  |.+.  ...+....+++++++||||.||++|+|+||++++ +++++.+.+....  ++++.+.|.++..+++.  
T Consensus       184 Eay~~f~~~~s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~-~~~i~~l~~~~~~--~~v~~~~~~~a~~~L~~--  258 (351)
T PRK01688        184 EAYIEFCPQASLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLAN-EEVINLLLKVIAP--YPLSTPVADIAAQALSP--  258 (351)
T ss_pred             CchhhcCCCCChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCC-HHHHHHHHhccCC--CCCCHHHHHHHHHHHhc--
Confidence            999  4322  1122234568999999999999999999999998 7999999876654  66888888888888873  


Q ss_pred             hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeee
Q 024997          143 EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGR  222 (259)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~  222 (259)
                        ...+++.+.++.++++++.+.+.|+.+++             +....|.+++|+|++++.  .+.+.+.|.++||.++
T Consensus       259 --~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-------------~~~~~ps~~nfi~~~~~~--~~~l~~~L~~~gi~vr  321 (351)
T PRK01688        259 --QGIAAMRERVAEINANRQWLIAALKEIPC-------------VEQVFDSETNYILARFTA--SSAVFKSLWDQGIILR  321 (351)
T ss_pred             --chHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CCeECCCCCcEEEEEcCC--HHHHHHHHHHCCeEEE
Confidence              12356778888899999999999987653             323456788999999863  3444455557899999


Q ss_pred             cCCcccCCCCeEEEEeecChhhHHHHHHHH
Q 024997          223 EGKKFRAEARFVRLSLLKSQDDFDLLLHRL  252 (259)
Q Consensus       223 ~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l  252 (259)
                      ++..+...++++|||++ ++++++.+++.|
T Consensus       322 ~~~~~~~~~~~iRis~~-~~~e~~~l~~al  350 (351)
T PRK01688        322 DQNKQPGLSNCLRITIG-TREECQRVIDAL  350 (351)
T ss_pred             ECCCcCCCCCeEEEeCC-CHHHHHHHHHhh
Confidence            87766433589999996 578888887766

>PRK06836 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.4e-33  Score=243.60  Aligned_cols=232  Identities=18%  Similarity=0.245  Sum_probs=181.9

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcC------C
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKG------P   59 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~------~   59 (259)
                      +|+|+.|...++..|.++.       .+.+|+++|++.++++++++++++||||||.+++        ++|++      +
T Consensus       127 ~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~  206 (394)
T PRK06836        127 APYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGR  206 (394)
T ss_pred             CCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCC
Confidence            5999999999988887652       2578889999999888999999999999999973        77888      8


Q ss_pred             CcEEEeeccc--c--CC-CCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHH------HHHhhhh-hcCCCC
Q 024997           60 YAKSIYDHAY--F--WP-HFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQR------MSAYISL-NTMGVS  127 (259)
Q Consensus        60 ~~~vi~De~y--~--~~-~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~------~~~~~~~-~~~~~~  127 (259)
                      |++||+||+|  |  .. ....+....+++++++||||.||++|+|+||++++ +++.+.      +...... ...+++
T Consensus       207 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (394)
T PRK06836        207 PIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVN-PEMEDADDLVAALVFANRILGFVNAP  285 (394)
T ss_pred             CeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCcceeeEEEecC-HHHhhhHHHHHHHHHHhhccccccCC
Confidence            9999999999  2  21 12222234568999999999999999999999998 566442      1111121 124678


Q ss_pred             HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCch
Q 024997          128 RECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREED  207 (259)
Q Consensus       128 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (259)
                      ++.|.++..++++     .     ..++.++++++.+.+.|+.++              +.+..+.+|+|+|+.++..+.
T Consensus       286 ~~~q~~~~~~l~~-----~-----~~~~~~~~~r~~l~~~L~~~g--------------~~~~~~~gg~~~~~~~~~~~~  341 (394)
T PRK06836        286 ALMQRVVAKCLDA-----T-----VDVSIYKRNRDLLYDGLTELG--------------FECVKPQGAFYLFPKSPEEDD  341 (394)
T ss_pred             HHHHHHHHHHhCC-----h-----HHHHHHHHHHHHHHHHHHhCC--------------CEeecCCceEEEEEeCCCCCH
Confidence            8899999888873     1     125678888999999998753              556688899999998876444


Q ss_pred             HHHHHHHHHcCeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          208 KDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       208 ~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ..+.+.|+++||.++||..|+. .+++||+++.+++++++++++|++++++
T Consensus       342 ~~~~~~l~~~gv~v~~g~~f~~-~~~iRi~~~~~~~~~~~~i~~l~~~l~~  391 (394)
T PRK06836        342 VAFCEKAKKHNLLLVPGSGFGC-PGYFRLSYCVDTETIERSLPAFEKLAKE  391 (394)
T ss_pred             HHHHHHHHhCCEEEECchhcCC-CCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            4455677789999999999975 4899999988999999999999999864

>PLN02397 aspartate transaminase

Probab=100.00  E-value=7.1e-34  Score=249.52  Aligned_cols=235  Identities=13%  Similarity=0.058  Sum_probs=177.7

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCC---CCceEEEEcCCCCCChhhHH--------HhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASS---DTHLVEFVTAPNNPDGQMNK--------AVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~~--------~la~~~~~   61 (259)
                      +|+|+.|...++..|.++.        .|++|++.+++.+.   ++++++++++||||||.+++        ++|+++|+
T Consensus       149 ~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~  228 (423)
T PLN02397        149 NPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNH  228 (423)
T ss_pred             CCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCc
Confidence            6999999999999988752        36778887776653   56789899999999999993        78899999


Q ss_pred             EEEeeccc--c--CC---CCCCC---CCCCCCeEEEeccccccCCCcceEEEEE--ecCHHHHHHH----HHhhhhhcCC
Q 024997           62 KSIYDHAY--F--WP---HFAPI---PAPADEELMIFTISKLTGHAGSRFGWAV--IKDEAVYQRM----SAYISLNTMG  125 (259)
Q Consensus        62 ~vi~De~y--~--~~---~~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i~--~~~~~~~~~~----~~~~~~~~~~  125 (259)
                      +||+||+|  |  +.   ...++   ....+++|+++||||+|+++|||+||++  ++++++++.+    .........+
T Consensus       229 ~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (423)
T PLN02397        229 LPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSN  308 (423)
T ss_pred             EEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCC
Confidence            99999999  3  21   11121   1234579999999999999999999985  4335665543    3444444556


Q ss_pred             CCHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC
Q 024997          126 VSRECQLRAFKLLKVVL-EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER  204 (259)
Q Consensus       126 ~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (259)
                      ++.+.|.++..+++... .....+++++.++.++++++.+.+.|++++. ..         .+.+..|+||+|+|++++ 
T Consensus       309 ~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~-~~---------~~~~~~p~gg~fl~~~l~-  377 (423)
T PLN02397        309 PPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGS-PG---------DWSHITKQIGMFSFTGLN-  377 (423)
T ss_pred             CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC---------CCCcccCCceEEEecCCC-
Confidence            78889999988887310 0001123677888999999999999997631 00         145568999999999884 


Q ss_pred             CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHhh
Q 024997          205 EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       205 ~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l~  257 (259)
                        .+++..+++++||.+.+       .+  |++++. +.+++++++++|++++.
T Consensus       378 --~~~~~~Ll~~~~V~v~~-------~~--Ri~~~~~~~~~i~~~~~~i~~~~~  420 (423)
T PLN02397        378 --KEQVDRMTKEYHIYMTR-------DG--RISMAGLSSKNVPYLADAIHAVVT  420 (423)
T ss_pred             --HHHHHHHHHhCCEEECC-------CC--eEEEeeCCHHHHHHHHHHHHHHHh
Confidence              57899999999999973       12  999984 99999999999999874

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.9e-33  Score=242.41  Aligned_cols=229  Identities=17%  Similarity=0.239  Sum_probs=180.2

Q ss_pred             CCCcccchhhhhhccCccc-----ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcC--CCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY-----KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKG--PYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-----~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~--~~~~vi~De~   68 (259)
                      +|+|+.|...+...|..+.     .+.+|++.+++.+++++++++++|||||||.+++     ++++.  +|+++|+||+
T Consensus       112 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~  191 (359)
T PRK03158        112 EPTFSQYRHNAIIEGAEVREVPLKDGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEA  191 (359)
T ss_pred             CCCHHHHHHHHHHcCCeEEEEecCCCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECc
Confidence            5999999999988887652     3567888898888888899999999999999994     45554  5999999999


Q ss_pred             c--c--CCCCCC---CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Q 024997           69 Y--F--WPHFAP---IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVV  141 (259)
Q Consensus        69 y--~--~~~~~~---~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~  141 (259)
                      |  |  .+....   ..+..+++++++||||.||++|+|+||++++ +++++.+.....  .++++.+.|.++..+++  
T Consensus       192 y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~-~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~--  266 (359)
T PRK03158        192 YYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIAS-EELIEKLNIARP--PFNTTRIAQYAAIAALE--  266 (359)
T ss_pred             hHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCC-HHHHHHHHHhcC--CCCCCHHHHHHHHHHhc--
Confidence            9  2  211111   1134568999999999999999999999999 699999987665  36789999999999997  


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeee
Q 024997          142 LEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIG  221 (259)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~  221 (259)
                          ..+++++.++.++++++.+.+.|++++              +.. .+.+|+|+|++++..+.++...++ ++||.+
T Consensus       267 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------~~~-~~~~g~~i~~~~~~~~~~~~~~l~-~~gv~v  326 (359)
T PRK03158        267 ----DQAFLKECVEKNAEGLEQYYAFCKEYG--------------LFY-YPSQTNFIFVDTGRDANELFEALL-KKGYIV  326 (359)
T ss_pred             ----CHHHHHHHHHHHHHHHHHHHHHHHHCC--------------Cee-CCCcCcEEEEECCCCHHHHHHHHH-HCCeEE
Confidence                345777778888888888888887653              333 345678999998643345555554 689999


Q ss_pred             ecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          222 REGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       222 ~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      +||+.|+. ++++||+++ ++++++.++++|++++
T Consensus       327 ~~g~~f~~-~~~iRi~~~-~~~~~~~l~~al~~~~  359 (359)
T PRK03158        327 RSGAALGF-PTGVRITIG-LKEQNDKIIELLKELL  359 (359)
T ss_pred             eeCCCCCC-CCeEEEecC-CHHHHHHHHHHHHHhC
Confidence            99999974 589999995 6888899999888763

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=100.00  E-value=1.1e-33  Score=246.91  Aligned_cols=234  Identities=15%  Similarity=0.082  Sum_probs=177.7

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCC---CCceEEEEcCCCCCChhhHH--------HhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASS---DTHLVEFVTAPNNPDGQMNK--------AVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~~--------~la~~~~~   61 (259)
                      +|+|+.|..+++..|.++.        .|++|++.|++.+.   +++++++++|||||||.+++        ++|+++|+
T Consensus       127 ~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~  206 (396)
T PRK09257        127 DPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGL  206 (396)
T ss_pred             CCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCc
Confidence            6999999999999988762        36788888888763   34678788999999999993        78999999


Q ss_pred             EEEeeccc--cCCC----CCCC---CCCCCCeEEEeccccccCCCcceEEEEEe--cCHHH----HHHHHHhhhhhcCCC
Q 024997           62 KSIYDHAY--FWPH----FAPI---PAPADEELMIFTISKLTGHAGSRFGWAVI--KDEAV----YQRMSAYISLNTMGV  126 (259)
Q Consensus        62 ~vi~De~y--~~~~----~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i~~--~~~~~----~~~~~~~~~~~~~~~  126 (259)
                      +||+||+|  |...    ..++   ....+++|+++||||+|+++|+|+||+++  ++++.    +.++.........++
T Consensus       207 ~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (396)
T PRK09257        207 IPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNP  286 (396)
T ss_pred             EEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCC
Confidence            99999999  3211    1111   12356899999999999989999999984  33443    334444444445667


Q ss_pred             CHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC
Q 024997          127 SRECQLRAFKLLKVVL-EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE  205 (259)
Q Consensus       127 ~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (259)
                      +.+.|.++..+++... .+..++++++.++.++++++.+.+.|+.+..       +   ..+.+..|++|+|+|++++  
T Consensus       287 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~~-------~---~~~~~~~p~gg~~~w~~l~--  354 (396)
T PRK09257        287 PAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGP-------S---RDFDFIARQRGMFSYSGLT--  354 (396)
T ss_pred             cHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------C---CCcccccccceEEEecCCC--
Confidence            8999999998887310 0001457788899999999999999987531       0   0144568999999999884  


Q ss_pred             chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHh
Q 024997          206 EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELI  256 (259)
Q Consensus       206 ~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l  256 (259)
                       .+++.++++++||.+.|.       +  ||+++. +++++++++++|++++
T Consensus       355 -~~~~~~l~~~~~V~~~p~-------~--ri~~~~~~~~~i~~~~~~i~~~~  396 (396)
T PRK09257        355 -PEQVDRLREEFGVYAVGS-------G--RINVAGLNESNIDYVAEAIAAVL  396 (396)
T ss_pred             -HHHHHHHHHcCCEEEcCC-------C--eEEEeeCCHHHHHHHHHHHHhhC
Confidence             577888889999999871       2  999985 9999999999998764

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=8.8e-34  Score=244.63  Aligned_cols=223  Identities=17%  Similarity=0.210  Sum_probs=175.4

Q ss_pred             CCCcccchhhhhhccCccc-----ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEeec
Q 024997            1 MPFYPLYQEQTDYFESVDY-----KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIYDH   67 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-----~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~De   67 (259)
                      +|+|+.|...++..|.++.     .+.+|+++|++.++++++++++||||||||.+++        ++|++++ ++|+||
T Consensus       112 ~P~y~~~~~~~~~~g~~v~~v~~~~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe  190 (366)
T PRK01533        112 GATFPQYRHHAIIEGCEVKEVALNNGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDE  190 (366)
T ss_pred             CCcHHHHHHHHHHcCCEEEEeecCCCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEc
Confidence            5999999999999988763     3568889999888888899999999999999983        4555555 677899


Q ss_pred             cc--c--CCCC-CCCC--CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q 024997           68 AY--F--WPHF-APIP--APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKV  140 (259)
Q Consensus        68 ~y--~--~~~~-~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  140 (259)
                      +|  |  .... ..+.  ...+++|+++||||+||++|+|+||++++ +++++.+.....  .++++.+.|.++..+++ 
T Consensus       191 ~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~-~~~~~~l~~~~~--~~~~~~~~q~aa~~~l~-  266 (366)
T PRK01533        191 AYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGH-EELIEKLNVVRL--PFNVSSLAQKAATIAFG-  266 (366)
T ss_pred             cHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCC-HHHHHHHHHhcC--CCCcCHHHHHHHHHHhC-
Confidence            99  3  1111 1111  34578999999999999999999999999 799999987654  47899999999999997 


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCee
Q 024997          141 VLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKII  220 (259)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~  220 (259)
                           ...+....++.++++++++...++.++              +.+.++ .|.|+|++++.  .+.+.+.|.++||.
T Consensus       267 -----~~~~~~~~~~~~~~~r~~~~~~l~~~g--------------~~~~~~-~~nf~~~~~~~--~~~~~~~l~~~GI~  324 (366)
T PRK01533        267 -----DDEFIEEIVRVNTEGLRQYESFCKENE--------------IPFYQS-QTNFIFLPVEN--GGEIYEACAHAGFI  324 (366)
T ss_pred             -----CHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CccCCC-cCcEEEEeCCC--HHHHHHHHHHCCcE
Confidence                 346777778888888888888887653              333344 57799999863  34455666689999


Q ss_pred             eecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          221 GREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       221 ~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      |++   |   ++++|||+ .+.++.+.+++.|+++++
T Consensus       325 Vr~---~---~~~iRis~-~~~~~~~~l~~al~~~~~  354 (366)
T PRK01533        325 IRP---F---PNGVRITV-GTREQNEGVISVLQQHFE  354 (366)
T ss_pred             Ecc---C---CCceEEeC-CCHHHHHHHHHHHHHHHH
Confidence            998   4   37899999 556888888888887764

>PLN02672 methionine S-methyltransferase

Probab=100.00  E-value=2.5e-33  Score=262.27  Aligned_cols=240  Identities=15%  Similarity=0.140  Sum_probs=184.5

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCC-CceEEEEcCCC-CCChhhHH--------HhhcCCCcE
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSD-THLVEFVTAPN-NPDGQMNK--------AVLKGPYAK   62 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~-~~~~i~i~~p~-NPtG~~~~--------~la~~~~~~   62 (259)
                      +|+|+.|...++..|.++        .+|.+|.+.|++.+++ ..++++++||| ||||.+++        ++|+++|++
T Consensus       785 ~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~  864 (1082)
T PLN02672        785 AGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGAR  864 (1082)
T ss_pred             CCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCE
Confidence            599999999999998876        2578888889998865 45678999997 99999993        789999999


Q ss_pred             EEeeccc----cCCCC---CCCC----C-----CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCC
Q 024997           63 SIYDHAY----FWPHF---APIP----A-----PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGV  126 (259)
Q Consensus        63 vi~De~y----~~~~~---~~~~----~-----~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~  126 (259)
                      ||+||+|    |....   .++.    .     ...++++++||||.|+++|+|+||++++++++++.+......  .++
T Consensus       865 VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~--s~~  942 (1082)
T PLN02672        865 VIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGL--SRP  942 (1082)
T ss_pred             EEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhh--cCC
Confidence            9999999    32211   1111    1     123799999999999999999999999865699999876442  333


Q ss_pred             CHHHHHHHHHHHHHHH--hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC
Q 024997          127 SRECQLRAFKLLKVVL--EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER  204 (259)
Q Consensus       127 ~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (259)
                      ..+.|.++..++....  .+....++.+.++.++++++.+.+.|+..+              +.+.+|++|+|+|++++.
T Consensus       943 ~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~G--------------i~v~~PeGGFfLwl~l~~ 1008 (1082)
T PLN02672        943 HSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEACG--------------WDVLEPQGGISMVAKPSA 1008 (1082)
T ss_pred             CcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CeEecCCcEEEEEEEccc
Confidence            4455665555443110  011234677788889999999999999764              566789999999997631


Q ss_pred             ------------------C-chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          205 ------------------E-EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       205 ------------------~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                                        . +.++...+++++||.+.||..|+. ++++||+++.+++++++++++|+++++
T Consensus      1009 ~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~-~g~~RIsfa~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1009 YLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGI-PGYCRFSFALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred             cccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCC-CCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence                              1 346777788778999999988775 589999999888999999999998764

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=5.5e-33  Score=238.82  Aligned_cols=229  Identities=21%  Similarity=0.307  Sum_probs=177.1

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCC-CceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSD-THLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~   68 (259)
                      +|+|+.|...++..|.++.      .|.+|++.+++.+++ ++++++++|||||||.+++     +++++++.++|+||+
T Consensus       107 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~  186 (351)
T PRK14807        107 HPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEA  186 (351)
T ss_pred             CCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCc
Confidence            5999999999998887752      367888899988864 8899999999999999983     778887888999999


Q ss_pred             c--c-CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcC
Q 024997           69 Y--F-WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDG  145 (259)
Q Consensus        69 y--~-~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~  145 (259)
                      |  | +....+.....+++|+++||||.||++|+|+||++++ +++++++......  ++++.+.|.++..+++.     
T Consensus       187 y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~-~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~-----  258 (351)
T PRK14807        187 YFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVAN-ENILKYLNLVKSP--YNINSLSQVIALKVLRT-----  258 (351)
T ss_pred             chhhcccchHHHhhhCCCEEEEecchHhcccchhceeeeecC-HHHHHHHHHccCC--CCcCHHHHHHHHHHHhH-----
Confidence            9  3 2222122234578999999999999999999999998 7999999876653  66789999999999873     


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCC
Q 024997          146 GNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGK  225 (259)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~  225 (259)
                        .++++..+.++++++.+.+.|+++++             +.+ .+.+|+|+|++++.  .+.+.+.|.++||.++++.
T Consensus       259 --~~~~~~~~~~~~~r~~l~~~l~~~~g-------------~~~-~~~~~~~~~i~~~~--~~~~~~~l~~~gV~v~~~~  320 (351)
T PRK14807        259 --GVLKERVNYILNERERLIKELSKIPG-------------IKV-YPSKTNFILVKFKD--ADYVYQGLLERGILVRDFS  320 (351)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHhCCC-------------cEE-CcCCccEEEEEcCC--HHHHHHHHHHCCEEEEECC
Confidence              25667777888899999888876543             333 35568899999873  4556666667899999865


Q ss_pred             cccCCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          226 KFRAEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       226 ~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      .+...++++||+++. +++.+.+++.|++++
T Consensus       321 ~~~~~~~~iRis~~~-~~~~~~l~~~l~~~~  350 (351)
T PRK14807        321 KVEGLEGALRITVSS-CEANDYLINGLKELL  350 (351)
T ss_pred             CCCCCCCeEEEEcCC-HHHHHHHHHHHHHhh
Confidence            433346899999964 455666677776654

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=3.5e-33  Score=240.96  Aligned_cols=229  Identities=23%  Similarity=0.314  Sum_probs=180.2

Q ss_pred             CCCcccchhhhhhccCcc------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc
Q 024997            1 MPFYPLYQEQTDYFESVD------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY   69 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y   69 (259)
                      +|+|+.|...++..|.++      .+|.+|++.|++.++++++++++++||||||.+++     ++|+++|+++|+||+|
T Consensus       118 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y  197 (361)
T PRK00950        118 TPTFSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAY  197 (361)
T ss_pred             CCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECch
Confidence            589999998888888765      23678888999888778889899999999999983     7889999999999999


Q ss_pred             --cC-CCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCC
Q 024997           70 --FW-PHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGG  146 (259)
Q Consensus        70 --~~-~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~  146 (259)
                        |. .....+....+++++++||||++|++|+|+||++++ +++++.+.+....  ++.+++.|.++..+++      .
T Consensus       198 ~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~a~~~l~------~  268 (361)
T PRK00950        198 VEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVP-EWLIDYYMRAKTP--FSLTRLSQAAAIAALS------D  268 (361)
T ss_pred             hhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCC-HHHHHHHHHhcCC--CCCCHHHHHHHHHHhc------C
Confidence              32 112222233467999999999999999999999999 6999988877654  4578899998888887      3


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCc
Q 024997          147 NNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKK  226 (259)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~  226 (259)
                      .+++++.++.++++++.+.+.|+                 +.. .+.+++|+|++++..+.+.+.+.|.++||.++||..
T Consensus       269 ~~~~~~~~~~~~~~r~~l~~~l~-----------------~~~-~~~~~~~i~~~~~~~~~~~~~~~l~~~gv~v~~~~~  330 (361)
T PRK00950        269 KEYIEKSIEHGIKSREYLYNELP-----------------FKV-YPSEANFVLVDVTPMTAKEFCEELLKRGVIVRDCTS  330 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcC-----------------eeE-CCCcceEEEEECCCCCHHHHHHHHHHCCEEEeeCCc
Confidence            45677777788888777766664                 111 356788999999554444455555578999999998


Q ss_pred             ccC-CCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          227 FRA-EARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       227 f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      |+. +++++|||++ +.++++++++.|+++++
T Consensus       331 f~~~~~~~lRis~~-~~~~~~~l~~~L~~il~  361 (361)
T PRK00950        331 FRGLGDYYIRVSIG-TFEENERFLEILKEIVE  361 (361)
T ss_pred             cCCCCCCeEEEECC-CHHHHHHHHHHHHHHhC
Confidence            864 4689999996 66789999999988764

>PRK07908 hypothetical protein; Provisional

Probab=100.00  E-value=2.6e-32  Score=234.56  Aligned_cols=228  Identities=14%  Similarity=0.156  Sum_probs=177.7

Q ss_pred             CCCcccchhhhhhccCcccc------cccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc
Q 024997            1 MPFYPLYQEQTDYFESVDYK------FEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY   69 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~------~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y   69 (259)
                      +|+|+.|...++..|.++..      |.+|++.+    .+++++++++|||||||.+++     ++|+ ++.++|+||+|
T Consensus       103 ~P~y~~~~~~~~~~G~~i~~v~~~~~~~~d~~~l----~~~~~~i~l~np~NPTG~~~~~~~l~~l~~-~~~~iIvDe~y  177 (349)
T PRK07908        103 HPSFTEPEAALRAAGIPVHRVVLDPPFRLDPAAV----PDDADLVVIGNPTNPTSVLHPAEQLLALRR-PGRILVVDEAF  177 (349)
T ss_pred             CCCChHHHHHHHHcCCEEEeeccCcccCcChhHh----ccCCCEEEEcCCCCCCCCCcCHHHHHHHHh-cCCEEEEECcc
Confidence            59999999999988887643      45555433    457889999999999999994     6675 47788899999


Q ss_pred             --c-CCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcC
Q 024997           70 --F-WPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDG  145 (259)
Q Consensus        70 --~-~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~  145 (259)
                        | .....++. ...+++++++||||.||++|+|+||++++ +++++.+......  +..+++.|.++..+++.    .
T Consensus       178 ~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~-~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~----~  250 (349)
T PRK07908        178 ADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGA-PDVLARLTRGRAH--WPVGTLQLEAIAACCAP----R  250 (349)
T ss_pred             hhhccCCccccccccCCCEEEEeecccccCCccceeeeeecC-HHHHHHHHhcCCC--CCccHHHHHHHHHHhcc----c
Confidence              3 22222222 23457999999999999999999999998 7999998876553  55777888877776652    2


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCC
Q 024997          146 GNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGK  225 (259)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~  225 (259)
                      ...++.+.++.++++++.+.+.|++++              +....|.+|+|+|++++.  .+.+.+.|+++||.++||.
T Consensus       251 ~~~~~~~~~~~~~~~r~~l~~~L~~~~--------------~~~~~p~~g~~~~~~~~~--~~~~~~~l~~~gI~v~~g~  314 (349)
T PRK07908        251 AVAEAAADAARLAADRAEMVAGLRAVG--------------ARVVDPAAAPFVLVRVPD--AELLRKRLRERGIAVRRGD  314 (349)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCC--------------cEeccCCCceEEEEECCc--HHHHHHHHHhCCEEEEECC
Confidence            446778889999999999999998752              445677899999999975  5677777888999999999


Q ss_pred             cccC-CCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          226 KFRA-EARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       226 ~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      .|+. +++++|||+ .++++++.+++.|++++.
T Consensus       315 ~f~~~~~~~vRis~-~~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        315 TFPGLDPDYLRLAV-RPRAEVPVLVQALAEILK  346 (349)
T ss_pred             CCCCCCCCeEEEEe-CCCccHHHHHHHHHHHHh
Confidence            9964 468999999 466778888888877764

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-32  Score=236.65  Aligned_cols=230  Identities=18%  Similarity=0.240  Sum_probs=177.1

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCC-CcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGP-YAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~-~~~vi~De~   68 (259)
                      +|+|+.|...++..|.++.      .|.+|+++|++    .+++++++|||||||.+++     ++++.+ ++++|+||+
T Consensus       108 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~  183 (353)
T PRK05387        108 DITYSFYPVYAGLYGIPYEEIPLDDDFSIDVEDYLR----PNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEA  183 (353)
T ss_pred             CCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHh----cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCc
Confidence            5999999999998887652      35677777753    3567899999999999994     666554 999999999


Q ss_pred             c--cCC-CCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhh-cCCCCHHHHHHHHHHHHHHHhc
Q 024997           69 Y--FWP-HFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN-TMGVSRECQLRAFKLLKVVLED  144 (259)
Q Consensus        69 y--~~~-~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~  144 (259)
                      |  |.. ...++....+++++++||||.||++|+|+||++++ +++++++....... .++++.+.|.++..+++     
T Consensus       184 y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~-----  257 (353)
T PRK05387        184 YVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGH-PELIEALNRVKNSFNSYPLDRLAQAGAIAAIE-----  257 (353)
T ss_pred             ccccCCcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecC-HHHHHHHHHhhccCCCCCcCHHHHHHHHHHhc-----
Confidence            9  422 11222234567999999999999999999999998 79999998876542 45788999999988886     


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecC
Q 024997          145 GGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREG  224 (259)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g  224 (259)
                       ..+++++.+++++++++.+.+.|++++              +.. .+.+++|+|++++..+.+.+.+.|.++||.+++.
T Consensus       258 -~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~  321 (353)
T PRK05387        258 -DEAYFEETRAKVIATRERLVEELEALG--------------FEV-LPSKANFVFARHPSHDAAELAAKLRERGIIVRHF  321 (353)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CeE-CCCcCcEEEEECCCCCHHHHHHHHHHCCEEEEEC
Confidence             335677889999999999999998764              332 4567889999987555455555566889999852


Q ss_pred             CcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          225 KKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       225 ~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ... ...+++|+|++ ++++++.++++|++++.+
T Consensus       322 ~~~-~~~~~iRis~~-~~~~~~~~~~~L~~~~~~  353 (353)
T PRK05387        322 NKP-RIDQFLRITIG-TDEEMEALVDALKEILAK  353 (353)
T ss_pred             CCC-CCCCeEEEEeC-CHHHHHHHHHHHHHHhhC
Confidence            211 13579999996 668999999999998753

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-32  Score=227.17  Aligned_cols=239  Identities=18%  Similarity=0.230  Sum_probs=195.0

Q ss_pred             CCCcccchhhhhhc-cCcc--------cccccChhhhcccC------CCCceEEEEcCCCCCChhhHH--------Hhhc
Q 024997            1 MPFYPLYQEQTDYF-ESVD--------YKFEGEANLWGNAS------SDTHLVEFVTAPNNPDGQMNK--------AVLK   57 (259)
Q Consensus         1 ~P~y~~~~~~~~~~-g~~~--------~~~~~d~~~l~~~~------~~~~~~i~i~~p~NPtG~~~~--------~la~   57 (259)
                      +|.||.+...++.. |+++        ++|+++.++||+++      ..+.+.++++|||||.|.+++        +.|.
T Consensus       177 tPyY~gfdrdl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~  256 (471)
T KOG0256|consen  177 TPYYPGFDRDLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFAS  256 (471)
T ss_pred             CCCCCcccccceeccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHh
Confidence            58899988777765 5544        56899999898876      347888999999999999993        7789


Q ss_pred             CCCcEEEeeccc----cC-CCCCCCC------C-CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCC
Q 024997           58 GPYAKSIYDHAY----FW-PHFAPIP------A-PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMG  125 (259)
Q Consensus        58 ~~~~~vi~De~y----~~-~~~~~~~------~-~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~  125 (259)
                      ++|+++|+||+|    |+ ..+.++.      . ..+++-++.|+||-||+||+|+|.|+..++++..+..+..+.  ..
T Consensus       257 ~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf--~~  334 (471)
T KOG0256|consen  257 RKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSF--GL  334 (471)
T ss_pred             hcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhc--cC
Confidence            999999999999    53 3343332      1 567899999999999999999999999988899888887765  66


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC
Q 024997          126 VSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE  205 (259)
Q Consensus       126 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (259)
                      +|+..|+.++.+|.+.  .=.+.++.+..++++.+.+++.+.|++++              +.++...+|+|+|+++...
T Consensus       335 vSs~tQ~~la~LLSD~--~f~~~yl~en~~Rl~~rh~~~~~gLk~lg--------------I~cl~s~AGlF~wvDlr~l  398 (471)
T KOG0256|consen  335 VSSQTQYLLASLLSDE--EFTREYLRENNKRLRIRHRYIVEGLKALG--------------IPCLKSNAGLFCWVDLRKL  398 (471)
T ss_pred             CcHHHHHHHHHHhchH--HHHHHHHHHHHHHHHHHHHHHHhhHHhcC--------------CceeecCCeeEEEEEhHHh
Confidence            8999999999999741  11244577888899999999999999887              7888999999999998765


Q ss_pred             --------chHHHHHHHHHcCeeeecCCccc-CCCCeEEEEeecChhh-HHHHHHHHHHHhh
Q 024997          206 --------EDKDCYGILKAAKIIGREGKKFR-AEARFVRLSLLKSQDD-FDLLLHRLDELIS  257 (259)
Q Consensus       206 --------~~~~~~~ll~~~gi~~~~g~~f~-~~~~~~Ris~~~~~~~-~~~~~~~l~~~l~  257 (259)
                              ..+....++.+-++.+.||++|. ..+||+|++|+...++ ++-+++||+.++.
T Consensus       399 L~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~  460 (471)
T KOG0256|consen  399 LTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLD  460 (471)
T ss_pred             cCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence                    24667778877799999999887 5679999999995555 5559999999875

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.8e-32  Score=237.22  Aligned_cols=230  Identities=19%  Similarity=0.281  Sum_probs=172.4

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----Hhhc--CCCcEEEeec
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLK--GPYAKSIYDH   67 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~--~~~~~vi~De   67 (259)
                      +|+|+.|...++..|.++.      .+++|+++|++.+++++++++++|||||||.+++     ++++  +.+.+||+||
T Consensus       119 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De  198 (371)
T PRK05166        119 YPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDE  198 (371)
T ss_pred             CCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEEC
Confidence            5899999999988887762      3577888999888778899999999999999993     3333  2488999999


Q ss_pred             cc--cC--CCCCCC----CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q 024997           68 AY--FW--PHFAPI----PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLK  139 (259)
Q Consensus        68 ~y--~~--~~~~~~----~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~  139 (259)
                      +|  |.  ....+.    ....+++|+++||||.||++|+|+||++++++++++.+.....  .++++.+.|.++..++.
T Consensus       199 ~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~--~~~~~~~~q~~~~~~l~  276 (371)
T PRK05166        199 AYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRT--PFNVNGAAQAAALAALD  276 (371)
T ss_pred             cHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhcc--CCCCCHHHHHHHHHHhc
Confidence            99  32  111111    1234579999999999999999999988754789888876554  36789999988888887


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCe
Q 024997          140 VVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKI  219 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi  219 (259)
                            ...++++.++.++++++.+.+.|+..+              +. ..+.+|+|+|++++..+.++...++ ++||
T Consensus       277 ------~~~~~~~~~~~~~~~r~~l~~~L~~~g--------------~~-~~p~~g~fl~~~~~~~~~~l~~~l~-~~gi  334 (371)
T PRK05166        277 ------DEEHLAKGVALALAERERLKKELAEMG--------------YR-IAPSRANFLFFDARRPASAVAEALL-RQGV  334 (371)
T ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHHHHCc--------------Ce-eCCCcCCEEEEeCCCCHHHHHHHHH-HCCe
Confidence                  346788888999999999999998753              32 2456789999998654344554444 6799


Q ss_pred             eeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          220 IGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       220 ~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      .++||..++. .+++||+++. +++.+..++.|++++
T Consensus       335 ~v~p~~~~~~-~~~iRi~~~~-~~~~~~l~~~l~~i~  369 (371)
T PRK05166        335 IVKPWKQPGF-ETFIRVSIGS-PEENDHFVAALDKVL  369 (371)
T ss_pred             EEecCCCCCC-CCeEEEEcCC-HHHHHHHHHHHHHHh
Confidence            9999986543 6899999975 334444444444443

>PRK06225 aspartate aminotransferase; Provisional

Probab=100.00  E-value=6.7e-32  Score=234.49  Aligned_cols=238  Identities=17%  Similarity=0.230  Sum_probs=185.8

Q ss_pred             CCCcccchhhhhhccCccc---------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEE
Q 024997            1 MPFYPLYQEQTDYFESVDY---------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKS   63 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~---------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~v   63 (259)
                      +|+|+.|...++..|..+.         +|.+|++.+++.++++++++++++||||||.+++        ++|+++|+++
T Consensus       114 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~i  193 (380)
T PRK06225        114 DPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFL  193 (380)
T ss_pred             CCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEE
Confidence            5899999888888877642         3567888999988888999999999999999872        7899999999


Q ss_pred             Eeeccc--cCCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q 024997           64 IYDHAY--FWPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKV  140 (259)
Q Consensus        64 i~De~y--~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  140 (259)
                      |+||+|  |........ ...+++++++||||.+|++|+|+||++++ +++++.+..... ...+++.+.|.++..+++.
T Consensus       194 i~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~-~~l~~~~~~~~~-~~~~~~~~~~~~a~~~l~~  271 (380)
T PRK06225        194 LHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVAT-PDLIEVVKSIVI-NDLGTNVIAQEAAIAGLKV  271 (380)
T ss_pred             EEehhHHHHhccCCchhhcCCCCEEEEeechhhcCCccceeEEEecC-HHHHHHHHHHHh-cccCCCHHHHHHHHHHHhc
Confidence            999998  322111111 13467999999999999999999999999 799999887653 3577889999998888873


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHcC
Q 024997          141 VLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAK  218 (259)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~g  218 (259)
                           .+.++++.++.++++++.+.+.|++++++.+            ...+.+|+|+|++++..  +...+.+.|.++|
T Consensus       272 -----~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~------------~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~g  334 (380)
T PRK06225        272 -----KDEWIDRIRRTTFKNQKLIKEAVDEIEGVFL------------PVYPSHGNMMVIDISEAGIDPEDLVEYLLERK  334 (380)
T ss_pred             -----chHHHHHHHHHHHHHHHHHHHHHHhCcCCcc------------ccCCCCCeEEEEEcccccCCHHHHHHHHHHCC
Confidence                 4566777777788888888888887543111            12456788889998642  4444555555789


Q ss_pred             eeeecCCcccC--CCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          219 IIGREGKKFRA--EARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       219 i~~~~g~~f~~--~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      |.++||..|+.  +.+++|+|++.+++++++++++|+++++
T Consensus       335 i~v~~g~~~~~~~~~~~iR~s~~~~~e~l~~~~~~l~~~~~  375 (380)
T PRK06225        335 IFVRQGTYTSKRFGDRYIRVSFSIPREQVEVFCEEFPDVVE  375 (380)
T ss_pred             EEEcCCcccCcCCCCceEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            99999987754  3579999998888999999999999876

>PRK09105 putative aminotransferase; Provisional

Probab=100.00  E-value=1.5e-32  Score=237.32  Aligned_cols=226  Identities=15%  Similarity=0.201  Sum_probs=172.8

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----Hhhc--CCCcEEEeec
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLK--GPYAKSIYDH   67 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~--~~~~~vi~De   67 (259)
                      +|+|+.|...++..|.++.      .|.+|.+.+++. .++++++++||||||||.+++     ++++  ++++++|+||
T Consensus       126 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDE  204 (370)
T PRK09105        126 DPTYEAGWRAADAQGAPVAKVPLRADGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDE  204 (370)
T ss_pred             CCChHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEEC
Confidence            6999999999999988752      356777888766 456889999999999999993     3332  3589999999


Q ss_pred             cc--cCCC--CCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 024997           68 AY--FWPH--FAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLE  143 (259)
Q Consensus        68 ~y--~~~~--~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~  143 (259)
                      +|  |...  ...+.+..+++++++||||.||++|+|+||++++ +++++.+...   ....++.+.|.++..+++    
T Consensus       205 aY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~-~~~i~~l~~~---~~~~~~~~~~~aa~~~L~----  276 (370)
T PRK09105        205 AYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAAR-PDLLAKLARF---GHNPLPVPAAAAGLASLR----  276 (370)
T ss_pred             chHHhccCcchHHHHhhCCCEEEEecccHhhcCCccceeeeecC-HHHHHHHHhc---CCCCcCHHHHHHHHHHHh----
Confidence            99  4321  1122234678999999999999999999999999 7999988876   235588888998888887    


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeec
Q 024997          144 DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGRE  223 (259)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~  223 (259)
                        .+.++++.++.++++++.+.+.|+.++              +.+.++++++| +++++..+.++...++ ++||.+  
T Consensus       277 --~~~~~~~~~~~~~~~r~~l~~~L~~~g--------------~~~~~~~~~f~-~~~~~~~~~~l~~~L~-~~gI~v--  336 (370)
T PRK09105        277 --DPKLVPQRRAENAAVREDTIAWLKKKG--------------YKCTPSQANCF-MVDVKRPAKAVADAMA-KQGVFI--  336 (370)
T ss_pred             --CHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CCcCCCCCcEE-EEeCCCCHHHHHHHHH-HCCcEE--
Confidence              346888889999999999999998754              33446666665 5777633345555555 679998  


Q ss_pred             CCcccCCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          224 GKKFRAEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       224 g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      |..|+..++++||+++ ++++++.+++.|++++
T Consensus       337 ~~~~~~~~~~~Ris~~-~~~~~~~l~~al~~~~  368 (370)
T PRK09105        337 GRSWPIWPNWVRVTVG-SEEEMAAFRSAFAKVM  368 (370)
T ss_pred             ecCCCCCCCeEEEEcC-CHHHHHHHHHHHHHHh
Confidence            4456544689999996 4677888888888765

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=8.2e-33  Score=238.23  Aligned_cols=229  Identities=17%  Similarity=0.223  Sum_probs=180.8

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCC-CCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASS-DTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~   68 (259)
                      +|+|+.|...++..|.++.      .|.+|++.|++.+. .+++++++++||||||.+++     ++++..+.++|+||+
T Consensus       112 ~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~  191 (356)
T PRK04870        112 EPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEA  191 (356)
T ss_pred             CCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECC
Confidence            5999999999999988762      36788899998885 58899999999999999983     555545889999999


Q ss_pred             c--cCC-CCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcC
Q 024997           69 Y--FWP-HFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDG  145 (259)
Q Consensus        69 y--~~~-~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~  145 (259)
                      |  |.. .........+++++++|||| ++++|+|+||++++ +++++++.....  .++++.+.|.++..+++.     
T Consensus       192 y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~-~~~i~~~~~~~~--~~~~~~~~q~~a~~~l~~-----  262 (356)
T PRK04870        192 YQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGH-PAWIAELDKVRP--PYNVNVLTQATALFALEH-----  262 (356)
T ss_pred             chhhcCcchHHHHhhCCCEEEEecchh-hhhHHHhhhhhhCC-HHHHHHHHHccC--CCcCCHHHHHHHHHHHhC-----
Confidence            9  321 11111134467999999999 89999999999999 699999887663  356888999988888762     


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCC
Q 024997          146 GNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGK  225 (259)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~  225 (259)
                       .+++++.++.++++++.+.+.|+.+++             +.. .+.+|+|+|++++  +.+.+...|+++||.+++|.
T Consensus       263 -~~~~~~~~~~~~~~~~~l~~~L~~~~~-------------~~~-~~~~~~~~~~~~~--~~~~~~~~l~~~gI~v~~~~  325 (356)
T PRK04870        263 -VDVLDAQAAQLRAERTRLAAALAALPG-------------VTV-FPSAANFILVRVP--DAAAVFDGLKTRGVLVKNLS  325 (356)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhCCC-------------cEE-CCCCCeEEEEECC--CHHHHHHHHHHCCEEEEECC
Confidence             345778888999999999999987643             322 4567789999987  34556677788999999999


Q ss_pred             cccC-CCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          226 KFRA-EARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       226 ~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      .|+. .++++|||++ ++++.+..++.|++++
T Consensus       326 ~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~  356 (356)
T PRK04870        326 GMHPLLANCLRVTVG-TPEENAQFLAALKAAL  356 (356)
T ss_pred             CCCCCCCCeEEEeCC-CHHHHHHHHHHHHHhC
Confidence            9864 4689999996 5777888888887754

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=5.1e-32  Score=234.20  Aligned_cols=230  Identities=20%  Similarity=0.279  Sum_probs=175.8

Q ss_pred             CCCcccchhhhhhccCcccc-----cccChhhhcccC-CCCceEEEEcCCCCCChhhHH-----Hhhc--CCCcEEEeec
Q 024997            1 MPFYPLYQEQTDYFESVDYK-----FEGEANLWGNAS-SDTHLVEFVTAPNNPDGQMNK-----AVLK--GPYAKSIYDH   67 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~-----~~~d~~~l~~~~-~~~~~~i~i~~p~NPtG~~~~-----~la~--~~~~~vi~De   67 (259)
                      +|+||.|...++..|.++..     ...|++.+.+.+ ++++++++++|||||||.+++     ++++  ++|++||+||
T Consensus       115 ~p~y~~~~~~~~~~g~~~~~vp~~~~~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE  194 (369)
T PRK08153        115 LGAYPTFNYHVAGFGGRLVTVPYRDDREDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDE  194 (369)
T ss_pred             CCcchHHHHHHHHcCCeEEEeeCCCCCCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeC
Confidence            59999999988888876632     245566666555 467899999999999999983     3332  2489999999


Q ss_pred             cc--c--CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 024997           68 AY--F--WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLE  143 (259)
Q Consensus        68 ~y--~--~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~  143 (259)
                      +|  |  .....++....+++++++||||+||++|+|+||++++ +++++.+.+....  ++++++.|.++..+++    
T Consensus       195 ~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~-~~~~~~l~~~~~~--~~~s~~~q~~~~~~l~----  267 (369)
T PRK08153        195 AYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGA-PGTIKAFDKVRNH--FGMNRIAQAAALAALK----  267 (369)
T ss_pred             chhhhcCcccchhhhhcCCCEEEEecchHhccCcchheeeeecC-HHHHHHHHHhhcC--CCCCHHHHHHHHHHhc----
Confidence            99  3  2223333334568999999999999999999999999 7999999887653  6789999999999997    


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHcCeee
Q 024997          144 DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAKIIG  221 (259)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~  221 (259)
                        ...++++.++.++++++.+.+.|+..+              +. ..|.+++|+|++++..  ..+.+.+.+.++||.+
T Consensus       268 --~~~~~~~~~~~~~~~r~~~~~~L~~~g--------------~~-~~p~~~~f~~~~~~~~~~~a~~l~~~l~~~Gi~v  330 (369)
T PRK08153        268 --DQAYLAEVVGKIAAARDRIAAIARANG--------------LT-PLPSATNFVAIDCGRDGAFARAVLDGLIARDIFV  330 (369)
T ss_pred             --CHHHHHHHHHHHHHHHHHHHHHHHHCC--------------Cc-cCCCcCcEEEEECCCCcccHHHHHHHHHHCCeEE
Confidence              346788889999999999999998654              22 2467889999998532  2334444455789999


Q ss_pred             e-cCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          222 R-EGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       222 ~-~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      + |+..  ...+++|||++ ++++++..++.|+++++
T Consensus       331 ~~p~~~--~~~~~iRis~~-~~~~~~~~~~al~~~~~  364 (369)
T PRK08153        331 RMPGVA--PLDRCIRVSCG-PDEELDLFAEALPEALE  364 (369)
T ss_pred             eeCCCC--CCCCeEEEecC-CHHHHHHHHHHHHHHHH
Confidence            5 6542  23579999996 68899999999988875

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=100.00  E-value=2.1e-32  Score=233.31  Aligned_cols=224  Identities=18%  Similarity=0.241  Sum_probs=177.7

Q ss_pred             CCCcccchhhhhhccCcccccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEeeccc--c
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIYDHAY--F   70 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~De~y--~   70 (259)
                      +|+|+.|...++..|.++..+. |++.|++.+ ++++++++++||||||.+++        ++|+++|++||+||+|  |
T Consensus        93 ~p~y~~~~~~~~~~g~~~~~~~-d~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~  170 (330)
T TIGR01140        93 APTYSEYARAWRAAGHEVVELP-DLDRLPAAL-EELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDF  170 (330)
T ss_pred             CCCcHHHHHHHHHcCCEEEEeC-CHHHHHhhc-ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECccccc
Confidence            5999999999999998876666 888898888 45678899999999999993        6788999999999999  3


Q ss_pred             CCCC--CCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcc
Q 024997           71 WPHF--APIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNN  148 (259)
Q Consensus        71 ~~~~--~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  148 (259)
                      .+..  ....+..+++++++||||.+|++|+|+||++++ +++++.+......  +.++.+.|.++..+++      ..+
T Consensus       171 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~-~~~~~~l~~~~~~--~~~s~~~q~~~~~~l~------~~~  241 (330)
T TIGR01140       171 TPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAH-PALLARLREALGP--WTVNGPARAAGRAALA------DTA  241 (330)
T ss_pred             CCccchhhHhccCCCEEEEEecchhhcCchhhhhheeCC-HHHHHHHHhcCCC--CCchHHHHHHHHHHHh------chH
Confidence            3221  111123578999999999999999999999999 6999998877643  5678899999999987      335


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCccc
Q 024997          149 IFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFR  228 (259)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~  228 (259)
                      +.++.++.++++++.+.+.|+.++.             ++ ..+.+|+|+|++++. ..++..+++ ++||.++||..|+
T Consensus       242 ~~~~~~~~~~~~~~~l~~~L~~~~~-------------~~-~~~~~~~f~~~~~~~-~~~l~~~l~-~~gi~v~pg~~f~  305 (330)
T TIGR01140       242 WQAATRARLAAERARLAALLARLGG-------------LE-VVGGTALFLLVRTPD-AAALHEALA-RRGILIRDFDNFP  305 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCC-------------ce-ECCCCCeEEEEEcCC-HHHHHHHHH-HCCEEEEECCCCC
Confidence            6677889999999999999997653             22 245678999999875 345555555 6899999999996


Q ss_pred             C-CCCeEEEEeecChhhHHHHHHHH
Q 024997          229 A-EARFVRLSLLKSQDDFDLLLHRL  252 (259)
Q Consensus       229 ~-~~~~~Ris~~~~~~~~~~~~~~l  252 (259)
                      . +++++||+++.+.++ +.++++|
T Consensus       306 ~~~~~~iRi~~~~~~~~-~~~~~~l  329 (330)
T TIGR01140       306 GLDPRYLRFALPTDEEN-DRLEEAL  329 (330)
T ss_pred             CCCCCEEEEEecCHHHH-HHHHHhh
Confidence            3 568999999775544 6666655

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=5.5e-32  Score=230.97  Aligned_cols=223  Identities=22%  Similarity=0.285  Sum_probs=167.3

Q ss_pred             CCCcccchhhhhhccCcccccccChhh-hcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc--cC-
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEGEANL-WGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY--FW-   71 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~d~~~-l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y--~~-   71 (259)
                      +|+|+.|..+++..|.++..+..|.+. +.......+++++++|||||||.+++     +++ +++++||+||+|  |. 
T Consensus       103 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~  181 (335)
T PRK14808        103 PPTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHG  181 (335)
T ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCcCCCChhHccCCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhcC
Confidence            599999999999999987554433211 10101135688999999999999994     566 579999999999  42 


Q ss_pred             CCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHH
Q 024997           72 PHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFE  151 (259)
Q Consensus        72 ~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~  151 (259)
                      ....+.....+++++++||||+||++|+|+||++++ +++++.+.....  .++++.+.|.++..+++.      .++..
T Consensus       182 ~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~-~~~~~~l~~~~~--~~~~~~~~q~a~~~~l~~------~~~~~  252 (335)
T PRK14808        182 ESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSS-EKFIDAYNRVRL--PFNVSYVSQMFAKVALDH------REIFE  252 (335)
T ss_pred             CchHHHHHhCCCEEEEEechhhccCcccceEEEEeC-HHHHHHHHHhcC--CCCCCHHHHHHHHHHHhC------HHHHH
Confidence            122121134468999999999999999999999999 699999987663  367889999998888762      34667


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCC
Q 024997          152 FGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEA  231 (259)
Q Consensus       152 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~  231 (259)
                      +..+.++++++.+.+.|+.++              +.+.++ .|.|+|+.++..+.+.+.+.+.++||.++.   |.   
T Consensus       253 ~~~~~~~~~r~~l~~~L~~~g--------------~~~~~~-~g~f~~~~l~~~~~~~~~~~l~~~Gi~V~~---~~---  311 (335)
T PRK14808        253 ERTKFIVEERERMKSALREMG--------------YRITDS-RGNFVFIFMEKEEKERLLEHLRAKNIAVRS---FR---  311 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHCC--------------CEECCC-CCeEEEEeCCCccHHHHHHHHHHCCeEEEE---CC---
Confidence            777888888899999898754              444455 567889998754445666777789999995   42   


Q ss_pred             CeEEEEeecChhhHHHHHHHHHHH
Q 024997          232 RFVRLSLLKSQDDFDLLLHRLDEL  255 (259)
Q Consensus       232 ~~~Ris~~~~~~~~~~~~~~l~~~  255 (259)
                      +++|||++. +++.+.+++.|+++
T Consensus       312 ~~~Risi~~-~~~~~~~~~~l~~~  334 (335)
T PRK14808        312 EGVRITIGK-REENDMILKELEVF  334 (335)
T ss_pred             CCeEEecCC-HHHHHHHHHHHHhh
Confidence            689999954 67778888877653

>PRK08637 hypothetical protein; Provisional

Probab=100.00  E-value=3.2e-32  Score=236.99  Aligned_cols=240  Identities=13%  Similarity=0.115  Sum_probs=173.8

Q ss_pred             CCCcccchhhhh-hccCccc-------ccccChhhhcccCC----CCceEEEEcCCCCCChhhHH--------Hhhc---
Q 024997            1 MPFYPLYQEQTD-YFESVDY-------KFEGEANLWGNASS----DTHLVEFVTAPNNPDGQMNK--------AVLK---   57 (259)
Q Consensus         1 ~P~y~~~~~~~~-~~g~~~~-------~~~~d~~~l~~~~~----~~~~~i~i~~p~NPtG~~~~--------~la~---   57 (259)
                      +|+|+.|...+. ..|.++.       .+++|+++|++.++    +.+++++++|||||||.+++        ++|+   
T Consensus       100 ~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~  179 (388)
T PRK08637        100 DHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELA  179 (388)
T ss_pred             CCCCccHHHHHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            699999998754 5676552       24677888887765    56677889999999999983        4443   


Q ss_pred             --CCCcEEEeeccc--c--CCC-CCC----CCCCCCCe--EEEeccccccCCCcceEEEEEecC-----HHHHHHHHHhh
Q 024997           58 --GPYAKSIYDHAY--F--WPH-FAP----IPAPADEE--LMIFTISKLTGHAGSRFGWAVIKD-----EAVYQRMSAYI  119 (259)
Q Consensus        58 --~~~~~vi~De~y--~--~~~-~~~----~~~~~~~~--i~~~S~SK~~g~~G~R~G~i~~~~-----~~~~~~~~~~~  119 (259)
                        +++++||+||+|  |  .+. ..+    +.+..+++  ++++|+||.++++|+|+||+++++     +++++.+....
T Consensus       180 ~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~  259 (388)
T PRK08637        180 DAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKV  259 (388)
T ss_pred             hcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHH
Confidence              289999999999  3  221 111    11334564  456799999999999999999652     58888876532


Q ss_pred             ----hhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCC
Q 024997          120 ----SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSP  195 (259)
Q Consensus       120 ----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (259)
                          .....++|.+.|.++..+++..   ....++.+.+..++++++.+.+.|+..+.      .    ..+.+.++++|
T Consensus       260 ~~~~~~~~~~~s~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~~l~~~~~------~----~~~~~~~~~~g  326 (388)
T PRK08637        260 KGLIRSNISNGPHPSQSAVLRALNSP---EFDKEKQEKFQILKERYEKTKEVLYDGKY------D----DAWQAYPFNSG  326 (388)
T ss_pred             HHHhhcccCCCCcHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHHHHHHHHHhhCC------C----CCcccccccce
Confidence                2233578999999999999731   23344556666788888888888875420      0    01455688999


Q ss_pred             eeEEEecCCCc-hHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          196 AYAWVKCEREE-DKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       196 ~~~~~~~~~~~-~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      +|+|++++..+ .+++..+++++||.+.+   +  +++++||+++. +.+++++++++|++++++
T Consensus       327 ~~~~~~l~~~~~~~l~~~l~~~~gv~~~~---~--~~~~iRi~~~~~~~~~i~~~~~~l~~~~~~  386 (388)
T PRK08637        327 YFMCLKLKGVDAEELRVHLLEKYGIGTIA---L--NETDLRIAFSCVEEEDIPELFDSIYKAIKD  386 (388)
T ss_pred             EEEEecCChHHHHHHHHHHhhhcceEEEe---c--cCCceEEEeecCCHHHHHHHHHHHHHHHHh
Confidence            99999997433 45566666788998875   2  35789999987 899999999999998864

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=1e-31  Score=232.38  Aligned_cols=232  Identities=17%  Similarity=0.238  Sum_probs=182.7

Q ss_pred             CCCcccchhhhhhccCcc-----cccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcC--CCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVD-----YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKG--PYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~-----~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~--~~~~vi~De~   68 (259)
                      +|+|+.|...++..|.++     .++.+|++.+++.+++++++++++|||||||.+++     ++++.  +|+++|+||+
T Consensus       115 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~  194 (367)
T PRK02731        115 EHGFAVYPIAAQAVGAKPVEVPAKDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEA  194 (367)
T ss_pred             cCCHHHHHHHHHHcCCeEEEecccCCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECc
Confidence            589999988888888765     34678889999988888899999999999999983     55554  4999999999


Q ss_pred             c--c--CC-CCCCCC--CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Q 024997           69 Y--F--WP-HFAPIP--APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVV  141 (259)
Q Consensus        69 y--~--~~-~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~  141 (259)
                      |  +  .. ....+.  +..+++++++||||.||++|+|+||++++ +++++.+.+....  ++.+.+.|.++.++++  
T Consensus       195 y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~-~~~~~~l~~~~~~--~~~~~~~~~~a~~~l~--  269 (367)
T PRK02731        195 YAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAP-PEIIDALNRVRQP--FNVNSLALAAAVAALD--  269 (367)
T ss_pred             HHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCC-HHHHHHHHHccCC--CCCCHHHHHHHHHHhC--
Confidence            8  2  11 111121  34568999999999999999999999999 6999998876543  5678899999999987  


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCee
Q 024997          142 LEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKII  220 (259)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~  220 (259)
                          ...++++.++.++++++.+.+.|++.+              +.+. +.+|+|+|++++.. +.+.+.+.|.++||.
T Consensus       270 ----~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~-~~~g~~~~i~~~~~~~~~~~~~~L~~~gI~  330 (367)
T PRK02731        270 ----DDAFVEKSRALNAEGMAWLTEFLAELG--------------LEYI-PSVGNFILVDFDDGKDAAEAYQALLKRGVI  330 (367)
T ss_pred             ----CHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CccC-CCCceEEEEECCCCCCHHHHHHHHHHCCEE
Confidence                345778888899999999999998763              3333 45688999998542 444555556678999


Q ss_pred             eecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          221 GREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       221 ~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ++++..|+. ++++|+|++ +.++++.+++.|+++++.
T Consensus       331 v~~~~~~~~-~~~iRis~~-~~~e~~~l~~aL~~~~~~  366 (367)
T PRK02731        331 VRPVAGYGL-PNALRITIG-TEEENRRFLAALKEFLAA  366 (367)
T ss_pred             EEeCCCCCC-CCeEEEecC-CHHHHHHHHHHHHHHHhc
Confidence            999988863 479999995 678889999999888753

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=4.5e-32  Score=233.41  Aligned_cols=229  Identities=22%  Similarity=0.286  Sum_probs=174.0

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcC-CCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKG-PYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~-~~~~vi~De~   68 (259)
                      +|+|+.|...++..|.++.      .|.+|++.++. + ++++++++||||||||.+++     ++++. .+++||+||+
T Consensus       109 ~P~y~~y~~~~~~~g~~v~~v~~~~~~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDea  186 (354)
T PRK04635        109 GPTYGMYAISAETFNVGVKALPLTADYQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEA  186 (354)
T ss_pred             CCChHHHHHHHHHcCCEEEEEecCCCCCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCc
Confidence            5999999999998888763      35677777763 3 68899999999999999993     55543 3699999999


Q ss_pred             c--cCC--CCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 024997           69 Y--FWP--HFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLED  144 (259)
Q Consensus        69 y--~~~--~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~  144 (259)
                      |  |..  +...+....+++++++||||.||++|+|+||++++ +++++.+.....  .++++.+.|.++.+++..    
T Consensus       187 y~~~~~~~s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~-~~~~~~l~~~~~--~~~~~~~~~~~a~~~l~~----  259 (354)
T PRK04635        187 YIEFCPEYSVADLLASYPNLVVLRTLSKAFALAGARCGFTLAN-EELIEILMRVIA--PYPVPLPVSEIATQALSE----  259 (354)
T ss_pred             hHhhccCcchHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCC-HHHHHHHHhhcC--CCCCCHHHHHHHHHHHhc----
Confidence            9  422  22222234578999999999999999999999999 799998886544  366788899988888863    


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecC
Q 024997          145 GGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREG  224 (259)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g  224 (259)
                      ...+++.+.++.++++++.+.+.|+++++             +.+.++ .|.|+|+++++  .+.+.++++++||.++++
T Consensus       260 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-------------~~~~~~-~g~f~~~~~~~--~~~~~~~l~~~gv~v~~~  323 (354)
T PRK04635        260 AGLARMKFQVLDLNAQGARLQAALSMYGG-------------AKVLEG-NGNYVLAKFDD--VDAVFKALWDAGIVARAY  323 (354)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------ceECCC-CCcEEEEECCC--HHHHHHHHHHCCEEEEEC
Confidence            12345677788899999999999987653             333344 46799998873  455666777899999875


Q ss_pred             CcccCCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          225 KKFRAEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       225 ~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      ..+. .++++|||++ ++++++.+++.|++-+
T Consensus       324 ~~~~-~~~~lRis~~-~~e~~~~l~~al~~~~  353 (354)
T PRK04635        324 KDPR-LANCIRFSFS-NRAETDKLIGLIRNQY  353 (354)
T ss_pred             CCCC-CCCeEEEEeC-CHHHHHHHHHHHHHhc
Confidence            4332 3579999994 6888999998887643

>PRK08354 putative aminotransferase; Provisional

Probab=100.00  E-value=1.6e-31  Score=226.00  Aligned_cols=215  Identities=17%  Similarity=0.207  Sum_probs=149.3

Q ss_pred             CCCcccchhhhhhccCcccccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEeeccc--c
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIYDHAY--F   70 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~De~y--~   70 (259)
                      +|+|+.|...++..|.++..+.+|++.|++.+. ++++++++|||||||.+++        ++|+++|+++|+||+|  |
T Consensus        84 ~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f  162 (311)
T PRK08354         84 RHTYGEYERVARFFAARIIKGPNDPEKLEELVE-RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDF  162 (311)
T ss_pred             CCCcHHHHHHHHHcCCEEeecCCCHHHHHHhhc-CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhc
Confidence            699999999999999998888899999988776 4567899999999999993        6788999999999999  3


Q ss_pred             CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchH
Q 024997           71 WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIF  150 (259)
Q Consensus        71 ~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~  150 (259)
                      -......  ..+++++++||||+||++|+|+||+++.    .+.+......  +.++.+.|.++..+++.     ..+++
T Consensus       163 ~~~~~~~--~~~~vi~~~S~SK~~~l~GlRiG~~v~~----~~~l~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~  229 (311)
T PRK08354        163 VKKPESP--EGENIIKLRTFTKSYGLPGIRVGYVKGF----EEAFRSVRMP--WSIGSTGYAFLEFLIED-----DFEHL  229 (311)
T ss_pred             ccccccc--CCCcEEEEeccHhhcCCccceeeeeeeh----HHHHHHcCCC--ccCCHHHHHHHHHHHHh-----HHHHH
Confidence            1111111  2578999999999999999999999983    3445544432  45666777766666652     22333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCC
Q 024997          151 EFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAE  230 (259)
Q Consensus       151 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~  230 (259)
                      .+.++.+.++++.+...+                    ..+++++++ |+++..  .+.+.+.|.++||.++||..|+. 
T Consensus       230 ~~~~~~~~~~~~~l~~~l--------------------~~~~~~~~~-~~~~~~--~~~~~~~l~~~gv~v~~g~~f~~-  285 (311)
T PRK08354        230 RKTMPLIWREKERFEKAL--------------------YVKSDANFF-IKDVGD--AEKFVEFLKRNGILVRDCTSFGL-  285 (311)
T ss_pred             HHHHHHHHHHHHHHHHhc--------------------CCCCCCcEE-EEECCC--HHHHHHHHHHCCeEEEecccCCC-
Confidence            344444444443332222                    124555555 466642  34444556688999999999975 


Q ss_pred             CCeEEEEeecChhhHHHHHHHHHH
Q 024997          231 ARFVRLSLLKSQDDFDLLLHRLDE  254 (259)
Q Consensus       231 ~~~~Ris~~~~~~~~~~~~~~l~~  254 (259)
                      ++++||+++. +++.+++++.|++
T Consensus       286 ~~~iRi~~~~-~~~~~~l~~al~~  308 (311)
T PRK08354        286 PGYIRFSVRD-REENEKLIRALRE  308 (311)
T ss_pred             CCeEEEEeCC-HHHHHHHHHHHHH
Confidence            5899999965 3334444444444

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-31  Score=232.11  Aligned_cols=229  Identities=17%  Similarity=0.191  Sum_probs=178.0

Q ss_pred             CCCcccchhhhhhccCcc------cccccChhhhcccCC-CCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVD------YKFEGEANLWGNASS-DTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~------~~~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~   68 (259)
                      +|+|+.|...++..|.+.      .+|++|++++++.+. +++++++++|||||||.+++     ++++.+++++|+||+
T Consensus       119 ~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~  198 (368)
T PRK03317        119 VPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEA  198 (368)
T ss_pred             CCChHHHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCC
Confidence            599999999999888764      257889999998885 57888899999999999993     778878999999999


Q ss_pred             c--cC--CCCCCCC--CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHH
Q 024997           69 Y--FW--PHFAPIP--APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVL  142 (259)
Q Consensus        69 y--~~--~~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~  142 (259)
                      |  |.  +......  +..+++++++||||.||++|+|+||++++ +++++.+.....  .++++++.|.++..+++.  
T Consensus       199 y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~-~~~~~~l~~~~~--~~~~s~~~~~a~~~~l~~--  273 (368)
T PRK03317        199 YAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAA-PAVVDALRLVRL--PYHLSAVTQAAARAALRH--  273 (368)
T ss_pred             chhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCC-HHHHHHHHhcCC--CCCCCHHHHHHHHHHhhC--
Confidence            9  42  1111111  23457999999999999999999999998 799999987653  467899999999999873  


Q ss_pred             hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeee
Q 024997          143 EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGR  222 (259)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~  222 (259)
                         . +...+.+++++++++.+.+.|+..+              +.+..+.+++++|.++.  +.+.+.+.+.++||.++
T Consensus       274 ---~-~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~Gv~v~  333 (368)
T PRK03317        274 ---A-DELLASVAALRAERDRVVAWLRELG--------------LRVAPSDANFVLFGRFA--DRHAVWQGLLDRGVLIR  333 (368)
T ss_pred             ---H-HHHHHHHHHHHHHHHHHHHHHHHCC--------------CEeCCCCCcEEEEeccC--CHHHHHHHHHHCCEEEE
Confidence               2 2344556678888888888888653              44557788888887764  34555566667899998


Q ss_pred             cCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhhC
Q 024997          223 EGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISKE  259 (259)
Q Consensus       223 ~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~~  259 (259)
                      +.   +. ++++||+++ ++++++.+++.|.++++.|
T Consensus       334 ~~---~~-~~~iRi~~~-~~~~~~~~~~~l~~~~~~~  365 (368)
T PRK03317        334 DV---GI-PGWLRVTIG-TPEENDAFLAALAEVLATE  365 (368)
T ss_pred             eC---CC-CCeEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence            73   32 479999995 5678899999998887643

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=7.9e-32  Score=230.30  Aligned_cols=218  Identities=18%  Similarity=0.239  Sum_probs=162.9

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY   69 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y   69 (259)
                      +|+|+.|...++..|.++.      +|++|++.+++.. +++++++++|||||||.+++     +++ ++|+++|+||+|
T Consensus       101 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~~i~-~~~~~ii~De~y  178 (337)
T PRK03967        101 PPTFGMYSFYAKLNGIPVIDVPLKEDFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEEEILKVL-ETGKPVVLDEAY  178 (337)
T ss_pred             CCChHHHHHHHHHcCCeEEEeecCCCCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHHHHH-hcCCEEEEECch
Confidence            5999999998888887752      3678888888764 46778889999999999984     566 479999999999


Q ss_pred             --cC-CCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCC
Q 024997           70 --FW-PHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGG  146 (259)
Q Consensus        70 --~~-~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~  146 (259)
                        |. .+..+.....+++|+++||||.||++|+|+||++++ +++++.+.+....  ++++.+.|.++..+++.      
T Consensus       179 ~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~-~~~i~~~~~~~~~--~~~~~~~q~~~~~~l~~------  249 (337)
T PRK03967        179 AEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIAN-EEIIDALYRIKPP--FSLNILTMKIVRLALDH------  249 (337)
T ss_pred             hhhcccchHHHHhhCCCEEEEecchHhhcchhhhheeeecC-HHHHHHHHhhcCC--CCCCHHHHHHHHHHHhC------
Confidence              42 122222234568999999999999999999999999 6999999887654  57889999999988872      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCc
Q 024997          147 NNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKK  226 (259)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~  226 (259)
                      .++..+.++.+.++++.+.+.|...                  ..+.+++|+|++++     . .+.|.++||.++++..
T Consensus       250 ~~~~~~~~~~~~~~r~~l~~~L~~~------------------~~~~~~~~~~~~~~-----~-~~~l~~~gi~v~~~~~  305 (337)
T PRK03967        250 YDLIEERIDYIIKERERVRRELGEY------------------AYPSDANFLLLKLD-----A-YDYLLENGIVVRKLSG  305 (337)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccC------------------cCCCCCcEEEEhHH-----H-HHHHHHCCEEEEeCCC
Confidence            2356666667777777777777632                  14678999999773     3 4445568999998653


Q ss_pred             ccCCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          227 FRAEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       227 f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      .  ..+++||+++. +++.+++++.|.++.
T Consensus       306 ~--~~~~~Ri~~~~-~~~~~~l~~~l~~~~  332 (337)
T PRK03967        306 R--LEGHIRVTVGK-REENDEFIKALKEIK  332 (337)
T ss_pred             C--CCCeEEEecCC-HHHHHHHHHHHHHHH
Confidence            2  35799999965 444455555555443

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.97  E-value=6e-31  Score=225.80  Aligned_cols=227  Identities=21%  Similarity=0.297  Sum_probs=178.8

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCC--CcEEEeec
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGP--YAKSIYDH   67 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~--~~~vi~De   67 (259)
                      +|+|+.|...++..|.++.      .+.+|+++|++.++++++++++++||||||.+++     ++++.+  |+++|+||
T Consensus       102 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~  181 (346)
T TIGR01141       102 PPTYSMYEISAKIHGAEVVKVPLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDE  181 (346)
T ss_pred             CCCHHHHHHHHHHcCCeEEEeccCCCCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEEC
Confidence            5899999988888887652      2457888898888888999999999999999993     566655  99999999


Q ss_pred             cc--cCC--CCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 024997           68 AY--FWP--HFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLE  143 (259)
Q Consensus        68 ~y--~~~--~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~  143 (259)
                      +|  |..  .........+++++++|+||.+|++|+|+||++++ +++++++......  ++.+++.|.++..+++.   
T Consensus       182 ~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~---  255 (346)
T TIGR01141       182 AYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIAN-AEIIDALNKVRAP--FNLSRLAQAAAIAALRD---  255 (346)
T ss_pred             chhhhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecC-HHHHHHHHhccCC--CCCCHHHHHHHHHHhCC---
Confidence            99  321  11111123457899999999999999999999998 7999998876543  66789999999888873   


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeec
Q 024997          144 DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGRE  223 (259)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~  223 (259)
                         ..++.+.++.++++++.+.+.|+++++             +. ..+.+|+|+|++++. +.+.+.+.|.++||.++|
T Consensus       256 ---~~~~~~~~~~~~~~~~~l~~~L~~~~g-------------~~-~~~~~g~~~~~~~~~-~~~~~~~~L~~~gI~v~~  317 (346)
T TIGR01141       256 ---DDFIEKTVEEINAERERLYDGLKKLPG-------------LE-VYPSDANFVLIRFPR-DADALFEALLEKGIIVRD  317 (346)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CE-ECCCcCCEEEEecCC-CHHHHHHHHHHCCeEEEe
Confidence               236788899999999999999987643             33 245568899999876 445555666678999999


Q ss_pred             CCcccCCCCeEEEEeecChhhHHHHHHHH
Q 024997          224 GKKFRAEARFVRLSLLKSQDDFDLLLHRL  252 (259)
Q Consensus       224 g~~f~~~~~~~Ris~~~~~~~~~~~~~~l  252 (259)
                      |..|+..++++|+|++ ++++++.+++.|
T Consensus       318 g~~f~~~~~~iRls~~-~~~~i~~~~~~l  345 (346)
T TIGR01141       318 LNSYPGLPNCLRITVG-TREENDRFLAAL  345 (346)
T ss_pred             CCCcCCCCCeEEEecC-CHHHHHHHHHHh
Confidence            9988643689999986 678888888776

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.97  E-value=4e-30  Score=214.16  Aligned_cols=245  Identities=16%  Similarity=0.179  Sum_probs=192.5

Q ss_pred             CCcccchhhhhhccCccc-----ccccChhhhcccC---C------CCceE-EEEcCCCCCChhhHH--------HhhcC
Q 024997            2 PFYPLYQEQTDYFESVDY-----KFEGEANLWGNAS---S------DTHLV-EFVTAPNNPDGQMNK--------AVLKG   58 (259)
Q Consensus         2 P~y~~~~~~~~~~g~~~~-----~~~~d~~~l~~~~---~------~~~~~-i~i~~p~NPtG~~~~--------~la~~   58 (259)
                      ++|+.-....+..|+.+.     ..+++++.|++.+   +      +++.+ +-|.+-+||||..++        +||++
T Consensus       156 ~ty~~AL~s~~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArK  235 (472)
T KOG0634|consen  156 YTYPSALQSMEALGVKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARK  235 (472)
T ss_pred             ccchHHHHhccccCceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHH
Confidence            456666666666776653     3467777777765   1      23444 334445899999994        89999


Q ss_pred             CCcEEEeecccc----C---C------CCCC--------CC-----CCCCCeEEEeccccccCCCcceEEEEEecCHHHH
Q 024997           59 PYAKSIYDHAYF----W---P------HFAP--------IP-----APADEELMIFTISKLTGHAGSRFGWAVIKDEAVY  112 (259)
Q Consensus        59 ~~~~vi~De~y~----~---~------~~~~--------~~-----~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~  112 (259)
                      |+++||+||.||    .   +      +..+        .+     +..++||.+.||||.++ ||+|+||++++ +.++
T Consensus       236 yDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-PGlRlG~it~~-~~~l  313 (472)
T KOG0634|consen  236 YDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRLGWITGN-SLFL  313 (472)
T ss_pred             cCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-CcceeEEeecC-HHHH
Confidence            999999999992    1   1      0111        11     45679999999999997 99999999999 6999


Q ss_pred             HHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCC
Q 024997          113 QRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP  192 (259)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  192 (259)
                      +.........+.++|.+.|.+.-+.++.+.+.+..+|+.+.+..|..|+..+..+|...       ++..   ....++|
T Consensus       314 ~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~ky-------lp~~---~~~~~~P  383 (472)
T KOG0634|consen  314 KRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKY-------LPKS---VCEYHPP  383 (472)
T ss_pred             HHHhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCC---eeEEecC
Confidence            99999888889999999999999999987554456899999999999999999998852       3322   2567799


Q ss_pred             CCCeeEEEecC-------C-Cc--hHHHHHHHHHcCeeeecCCcccCC-----CC-eEEEEeec-ChhhHHHHHHHHHHH
Q 024997          193 PSPAYAWVKCE-------R-EE--DKDCYGILKAAKIIGREGKKFRAE-----AR-FVRLSLLK-SQDDFDLLLHRLDEL  255 (259)
Q Consensus       193 ~~~~~~~~~~~-------~-~~--~~~~~~ll~~~gi~~~~g~~f~~~-----~~-~~Ris~~~-~~~~~~~~~~~l~~~  255 (259)
                      .+|+|+|++++       . .+  .+.....+.++||.+++|+.|...     .. ++|++++. ++++++++++|+..+
T Consensus       384 ~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~  463 (472)
T KOG0634|consen  384 KAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSV  463 (472)
T ss_pred             CcceEEEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHH
Confidence            99999999996       2 12  466777788999999999999842     33 89999988 999999999999998


Q ss_pred             hhh
Q 024997          256 ISK  258 (259)
Q Consensus       256 l~~  258 (259)
                      +++
T Consensus       464 ike  466 (472)
T KOG0634|consen  464 IKE  466 (472)
T ss_pred             HHH
Confidence            875

>PLN02368 alanine transaminase

Probab=99.97  E-value=1.4e-30  Score=226.74  Aligned_cols=190  Identities=14%  Similarity=0.137  Sum_probs=148.7

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCC------CceEEEEcCCCCCChhhHH--------HhhcC
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSD------THLVEFVTAPNNPDGQMNK--------AVLKG   58 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~~--------~la~~   58 (259)
                      +|+|+.|...++..|.++        .+|++|++.|++.+++      ++++++++|||||||.+++        ++|++
T Consensus       162 ~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~  241 (407)
T PLN02368        162 VPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQ  241 (407)
T ss_pred             CCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHH
Confidence            699999999999998765        2378899999988753      6898999999999999993        78999


Q ss_pred             CCcEEEeeccc----cCC--CCCCCC----C------CCCCeEEEecccccc-CCCcceEEEEEe---cCHHHHHHHHHh
Q 024997           59 PYAKSIYDHAY----FWP--HFAPIP----A------PADEELMIFTISKLT-GHAGSRFGWAVI---KDEAVYQRMSAY  118 (259)
Q Consensus        59 ~~~~vi~De~y----~~~--~~~~~~----~------~~~~~i~~~S~SK~~-g~~G~R~G~i~~---~~~~~~~~~~~~  118 (259)
                      +|++||+||+|    |..  .+.++.    .      ..+++|+++||||+| |++|||+||+++   + +++++.+...
T Consensus       242 ~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~-~~li~~~~~~  320 (407)
T PLN02368        242 ERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP-PKTVEEIYKV  320 (407)
T ss_pred             cCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCC-HHHHHHHHHH
Confidence            99999999999    322  222211    1      134899999999998 899999999995   6 7999999887


Q ss_pred             hhhhcCCCCHHHHHHHHHHHHHHHhcC--CcchH---HHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCC
Q 024997          119 ISLNTMGVSRECQLRAFKLLKVVLEDG--GNNIF---EFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPP  193 (259)
Q Consensus       119 ~~~~~~~~~~~~q~~~~~~l~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  193 (259)
                      .. ..++++.+.|.++.++++....++  .+.+.   .+..+.+++|++.+.+.|+++++             +.+..|+
T Consensus       321 ~~-~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g-------------~~~~~P~  386 (407)
T PLN02368        321 AS-IALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKN-------------VVCNFTE  386 (407)
T ss_pred             hc-ccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------------eEeCCCC
Confidence            53 457889999999999997310000  01123   45678999999999999998754             6667899


Q ss_pred             CCeeEEEecCCC
Q 024997          194 SPAYAWVKCERE  205 (259)
Q Consensus       194 ~~~~~~~~~~~~  205 (259)
                      |+||+|++++-.
T Consensus       387 Gafy~~~~i~lp  398 (407)
T PLN02368        387 GAMYSFPQIKLP  398 (407)
T ss_pred             eeeEeccCCCCC
Confidence            999999877653

>PRK03321 putative aminotransferase; Provisional

Probab=99.97  E-value=1.5e-29  Score=217.65  Aligned_cols=226  Identities=17%  Similarity=0.245  Sum_probs=169.7

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcC--CCcEEEeec
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKG--PYAKSIYDH   67 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~--~~~~vi~De   67 (259)
                      +|+|+.|...++..|.+..      .+.+|++.+++.++++++++++++||||||.+++     ++|+.  +|+++|+||
T Consensus       105 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De  184 (352)
T PRK03321        105 WRSFEAYPILVQVAGATPVQVPLTPDHTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDE  184 (352)
T ss_pred             CCCHHHHHHHHHHcCCEEEEccCCCCCCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEec
Confidence            4788888888888887642      3567788898888888899999999999999983     56665  699999999


Q ss_pred             cc--c--CCCC-CCCC--CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q 024997           68 AY--F--WPHF-APIP--APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKV  140 (259)
Q Consensus        68 ~y--~--~~~~-~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  140 (259)
                      +|  |  .... ..+.  ...+++++++||||.||++|+|+||++++ +++++.+....  ..++++.+.|.++.+++..
T Consensus       185 ~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~-~~~~~~~~~~~--~~~~~s~~~q~~a~~~l~~  261 (352)
T PRK03321        185 AYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGH-PEVIAALRKVA--VPFSVNSLAQAAAIASLAA  261 (352)
T ss_pred             hHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCC-HHHHHHHHHhc--CCCCCCHHHHHHHHHHhcC
Confidence            99  2  2211 1111  23468999999999999999999999999 79999998764  3578899999988888862


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCee
Q 024997          141 VLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKII  220 (259)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~  220 (259)
                           .+.+ .+..+.+.++++.+.+.|+..+              +.. .+.+|+|+|+++... ...+.+.|+++||.
T Consensus       262 -----~~~~-~~~~~~~~~~r~~~~~~L~~~~--------------~~~-~~~~g~~i~i~l~~~-~~~~~~~l~~~gI~  319 (352)
T PRK03321        262 -----EDEL-LERVDAVVAERDRVRAALRAAG--------------WTV-PPSQANFVWLPLGER-TADFAAAAAEAGVV  319 (352)
T ss_pred             -----HHHH-HHHHHHHHHHHHHHHHHHHHCC--------------Ccc-CCCCCCEEEEeCCCC-HHHHHHHHHHCCEE
Confidence                 2333 4445556666777888887643              322 345688999998643 34444556789999


Q ss_pred             eecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          221 GREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       221 ~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      +++   |+  .+++||++ .+.++.+.++++|+++++
T Consensus       320 v~~---~~--~~~iRi~~-~~~~~~~~~~~al~~~~~  350 (352)
T PRK03321        320 VRP---FA--GEGVRVTI-GAPEENDAFLRAARAWRA  350 (352)
T ss_pred             EEc---cC--CCcEEEee-CCHHHHHHHHHHHHHHhc
Confidence            987   54  35699999 567888889988888764

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.96  E-value=1.6e-28  Score=195.90  Aligned_cols=222  Identities=17%  Similarity=0.231  Sum_probs=176.4

Q ss_pred             cccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHhhcCCCcEEEeeccccCCCCCC-----CC-CCCCCe
Q 024997           19 YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVLKGPYAKSIYDHAYFWPHFAP-----IP-APADEE   84 (259)
Q Consensus        19 ~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~vi~De~y~~~~~~~-----~~-~~~~~~   84 (259)
                      .+|.+|+++|+  +.+++.+|+++-|.||||.++        .++|+++|+.+|+|++| +..+..     +. .-.+++
T Consensus       165 FKY~vDF~~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAY-g~PFP~iifsd~~~~w~~Ni  241 (417)
T COG3977         165 FKYHVDFEHLH--IGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAY-GVPFPGIIFSDATPLWNENI  241 (417)
T ss_pred             eeeccCHHHcc--cccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEeccc-CCCCCceecccccccCCCCE
Confidence            45788888776  458899999999999999999        37899999999999999 322221     11 346889


Q ss_pred             EEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHH
Q 024997           85 LMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIF-EFGYNTMKKRWEN  163 (259)
Q Consensus        85 i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~  163 (259)
                      +.+.|+||. |+||.|+|.+++. +++++++.+.....+..++...+++++.++++   |+-.+.. +..+.-|+++...
T Consensus       242 ilC~SLSK~-GLPG~R~GIiIan-e~viqaitnmn~iisLap~~~G~Aia~~mie~---gdl~rlseqVIrPFY~~~~q~  316 (417)
T COG3977         242 ILCMSLSKL-GLPGSRCGIIIAN-EKVIQAITNMNGIISLAPGRMGPAIAAEMIES---GDLLRLSEQVIRPFYRNRVQT  316 (417)
T ss_pred             EEEeehhhc-CCCCcceeEEEcc-HHHHHHHHhccceeeecCCCccHHHHHHHhhc---chHHHHHHHhhhHHHHHHHHH
Confidence            999999998 7999999999999 79999999998888888899999999999985   2111111 2344556667777


Q ss_pred             HHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHcCeeeecCCcccCC--------CCe
Q 024997          164 LSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAKIIGREGKKFRAE--------ARF  233 (259)
Q Consensus       164 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~g~~f~~~--------~~~  233 (259)
                      ....|++.       +++   .-+..+.|+|++|+|+.+++.  +...+.+.|++.|+.++||+.|.++        ..+
T Consensus       317 ~~~~l~~~-------lp~---~~~~iHkpEGAIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC  386 (417)
T COG3977         317 TIAILRRY-------LPE---YRCLIHKPEGAIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQC  386 (417)
T ss_pred             HHHHHHHh-------cCc---cceeeecCCcceeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccce
Confidence            77777642       111   116678999999999998876  5788888899999999999999853        457


Q ss_pred             EEEEeecChhhHHHHHHHHHHHhhh
Q 024997          234 VRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       234 ~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +|+++..+++.+++++.+|.+-+++
T Consensus       387 ~Rmn~~~~~~~ie~Gva~lae~ve~  411 (417)
T COG3977         387 MRMNYVPEPEKIEKGVAILAEEVER  411 (417)
T ss_pred             EEEecCCCHHHHHHHHHHHHHHHHH
Confidence            9999988999999999999887764

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.94  E-value=5.6e-26  Score=178.24  Aligned_cols=235  Identities=15%  Similarity=0.181  Sum_probs=178.9

Q ss_pred             CCcccchhhhhhccCcc------cccccChhhhcccC--CCCceEEEEcCCCCCChhhHH-----HhhcC-CCcEEEeec
Q 024997            2 PFYPLYQEQTDYFESVD------YKFEGEANLWGNAS--SDTHLVEFVTAPNNPDGQMNK-----AVLKG-PYAKSIYDH   67 (259)
Q Consensus         2 P~y~~~~~~~~~~g~~~------~~~~~d~~~l~~~~--~~~~~~i~i~~p~NPtG~~~~-----~la~~-~~~~vi~De   67 (259)
                      |+|..|.-.+...+.++      ..|.+|.+++.+.+  ...+|++++++|+||||..+.     ++.+. -|.+|++||
T Consensus       119 PtysMY~v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDE  198 (375)
T KOG0633|consen  119 PTYSMYVVDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDE  198 (375)
T ss_pred             CcceeEEEEeecCCceEEEecCCCCccccHHHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEee
Confidence            88999998888877766      35788889998888  347899999999999999984     44443 478999999


Q ss_pred             cc--cCCCCCC--CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 024997           68 AY--FWPHFAP--IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLE  143 (259)
Q Consensus        68 ~y--~~~~~~~--~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~  143 (259)
                      +|  |......  +....++.+++.|+||+||++|+|+||-..+ ..++.-+.+.+..  +++|.+...+++++++.   
T Consensus       199 AYidFsg~~S~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~-~~ia~iln~~KaP--YNiS~~~s~~AL~Als~---  272 (375)
T KOG0633|consen  199 AYIDFSGVESRMKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFP-LSIAEILNRAKAP--YNISVAGSVAALAALSD---  272 (375)
T ss_pred             eeEeeccccccchHhHhCCceeehhhhhhhcCcceeEeeccccc-HHHHHHHHhccCC--ccccchhHHHHHHhcCc---
Confidence            99  5322222  2357789999999999999999999999999 8999999888876  66778888888888874   


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC----chHHHHHHHHHcCe
Q 024997          144 DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE----EDKDCYGILKAAKI  219 (259)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gi  219 (259)
                       ..-..++..+..+-+.+.++...|..++...            ....+..+.|+++.+.+.    +.....+++.++||
T Consensus       273 -~n~kkme~~rdaiv~er~RL~keLt~v~~~~------------~~~gg~daNFiLi~v~~~~n~~akkly~q~at~~gV  339 (375)
T KOG0633|consen  273 -SNGKKMEDVRDAIVRERERLFKELTEVPFLN------------DYPGGSDANFILIEVTGGDNGMAKKLYKQDATKMGV  339 (375)
T ss_pred             -ccchHHHHHHHHHHHHHHHHHHHhhcCcccc------------CCCCcccccEEEEEEcCCCcHHHHHHHHHHHHhcce
Confidence             2445678888888899999999998766311            112455577888888754    34567777888999


Q ss_pred             eeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          220 IGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       220 ~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      .+|--..-....|++||+++. +|+-.-+++.+++++
T Consensus       340 vVRfrgse~~c~G~lRitvGt-~EentvL~k~~K~~l  375 (375)
T KOG0633|consen  340 VVRFRGSEEGCKGYLRITVGT-PEENTVLMKCLKQFL  375 (375)
T ss_pred             EEEEcCCccccceeEEEEcCC-cccchHHHHHHHhhC
Confidence            998622111247899999955 455566777777764

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.94  E-value=3.1e-25  Score=189.57  Aligned_cols=224  Identities=13%  Similarity=0.071  Sum_probs=163.2

Q ss_pred             CCcccchhhhhhccCcccccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHhhcCCCcEEEeecccc---
Q 024997            2 PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVLKGPYAKSIYDHAYF---   70 (259)
Q Consensus         2 P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~vi~De~y~---   70 (259)
                      |+|+.|...+++.|.+...+ .|++.++.  .+++++|++ +++||+|.++        .++|+++|+++|+||+|-   
T Consensus       106 p~~~s~~~~~~l~ga~~~~~-~~l~~l~~--~~~~~lIii-tg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~  181 (346)
T TIGR03576       106 PAHPSIPRSCKLAGAEYFES-DELSELKK--IDGTSLVVI-TGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARV  181 (346)
T ss_pred             CCchhHHHHHHHcCCEEecc-CCHHHHhh--CcCceEEEE-ECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccc
Confidence            68888888888888865332 24444432  245777666 5679999985        267889999999999992   


Q ss_pred             -CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcch
Q 024997           71 -WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNI  149 (259)
Q Consensus        71 -~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  149 (259)
                       ...........+..++++||||  +++|+|+||++++ +++++.+.+.......+.+++.|.++.++|+.     ..  
T Consensus       182 ~~~~~~~~~~~~~~divv~s~SK--alaG~r~G~v~~~-~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~-----~~--  251 (346)
T TIGR03576       182 RRLYGQPPALDLGADLVVTSTDK--LMDGPRGGLLAGR-KELVDKIKSVGEQFGLEAQAPLLAAVVRALEE-----FE--  251 (346)
T ss_pred             cccCCCCCHHHcCCcEEEeccch--hccccceEEEEeC-HHHHHHHHHhhcCcccCccHHHHHHHHHHHhh-----cc--
Confidence             1111110011123577889999  5689999999999 79999999988766666788999999999873     21  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCccc
Q 024997          150 FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFR  228 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~  228 (259)
                      ..+.++.++++++.+.+.++.+.                ..++ .+.|+|++++.. +.+++.++|+++||.++||..|.
T Consensus       252 ~~~~~~~l~~r~~~~~~~l~~~~----------------~~~~-~~~f~~~~~~~~~~~~~~~~ll~~~gV~v~~~~~f~  314 (346)
T TIGR03576       252 LSRIRDAFKRKEEVYLRLFDKLN----------------VERT-PTGFVIKGVEEEKLIEIGLDLLRNYGIITITAVGMP  314 (346)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC----------------CCcC-CCeEEEEeCCCCCHHHHHHHHHHhCCEEEeCCcccC
Confidence            34567788888888877776422                1233 344899998753 35789999999999999999885


Q ss_pred             CCCCeEEEEeecChh---hHHHHHHHHHHHh
Q 024997          229 AEARFVRLSLLKSQD---DFDLLLHRLDELI  256 (259)
Q Consensus       229 ~~~~~~Ris~~~~~~---~~~~~~~~l~~~l  256 (259)
                      ..++++|||++.+++   +++.+++.|++.+
T Consensus       315 ~~~~~vRis~~~~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       315 GASKTLRFDLAAKDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             CCCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence            446899999987555   7899999988765

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.93  E-value=2.9e-24  Score=184.02  Aligned_cols=235  Identities=21%  Similarity=0.289  Sum_probs=185.5

Q ss_pred             CCCcccchhhhhhccCccccc------ccCh--hhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDYKF------EGEA--NLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~------~~d~--~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.+...++..|.....+      ..+.  +.++....++++++++++|+||||.+++        ++|+++|+++|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~i  169 (350)
T cd00609          90 DPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILII  169 (350)
T ss_pred             CCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEE
Confidence            478999999998888765322      2222  4455556778999999999999999883        68999999999


Q ss_pred             eecccc----CCCCC---CCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Q 024997           65 YDHAYF----WPHFA---PIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKL  137 (259)
Q Consensus        65 ~De~y~----~~~~~---~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  137 (259)
                      +|++|.    .....   ...+..+.+++++|+||.++.+|.|+||++++++++.+.+.........+++...|.++..+
T Consensus       170 vD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (350)
T cd00609         170 SDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAA  249 (350)
T ss_pred             EecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHH
Confidence            999992    12221   11245567999999999999899999999999338999998888776778899999988888


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHH
Q 024997          138 LKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKA  216 (259)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~  216 (259)
                      ++.     ......+.++.++++++.+.+.|++++.             .....+.+|+++|+.++.. +.+.+.+++.+
T Consensus       250 l~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~  311 (350)
T cd00609         250 LDD-----GEEHLEELRERYRRRRDALLEALKELGP-------------LVVVKPSGGFFLWLDLPEGDDEEFLERLLLE  311 (350)
T ss_pred             HhC-----cHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------ccccCCCccEEEEEecCCCChHHHHHHHHHh
Confidence            884     2256788888999999999999998663             1113667899999998765 46778888988


Q ss_pred             cCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHH
Q 024997          217 AKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLD  253 (259)
Q Consensus       217 ~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~  253 (259)
                      +||.++++..|.. +..++|++++..+++++.++++|+
T Consensus       312 ~gi~i~~~~~~~~~~~~~iRi~~~~~~~~i~~~~~al~  349 (350)
T cd00609         312 AGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLA  349 (350)
T ss_pred             CCEEEecccccccCCCCeEEEEeeCCHHHHHHHHHHhh
Confidence            9999999888873 568999999777889999999886

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.92  E-value=2.9e-23  Score=172.06  Aligned_cols=243  Identities=16%  Similarity=0.175  Sum_probs=165.9

Q ss_pred             CCCcccchhhhhhccCccc-----ccccChhhhcccC--CCCceEEEEcCC--CCCChhhHH-----Hhh----cCCCcE
Q 024997            1 MPFYPLYQEQTDYFESVDY-----KFEGEANLWGNAS--SDTHLVEFVTAP--NNPDGQMNK-----AVL----KGPYAK   62 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-----~~~~d~~~l~~~~--~~~~~~i~i~~p--~NPtG~~~~-----~la----~~~~~~   62 (259)
                      .|+|.-+-.+.+.+|.+..     .-++|++.++++.  ++..|. +.|-|  +||||.+++     ++|    ...++.
T Consensus       131 vPGYDRHFai~E~~Giemi~VpM~~dGPDmD~Ve~LV~~D~svKG-iWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFR  209 (425)
T PF12897_consen  131 VPGYDRHFAITEHFGIEMIPVPMTEDGPDMDMVEELVAEDPSVKG-IWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFR  209 (425)
T ss_dssp             ES--HHHHHHHHHCT-EEEEEEEETTEE-HHHHHHHTHTSTTEEE-EEE-SSS-TTT-----HHHHHHHHHS--SSTT-E
T ss_pred             CCCchHHHHHHHhhCcEEEecCCCCCCCCHHHHHHHHhcCCccce-EEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeE
Confidence            3889999999999998863     3489999999998  457787 45555  899999995     454    468999


Q ss_pred             EEeeccc-c----CC-C-CC--CCC------CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCC
Q 024997           63 SIYDHAY-F----WP-H-FA--PIP------APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVS  127 (259)
Q Consensus        63 vi~De~y-~----~~-~-~~--~~~------~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~  127 (259)
                      |+.|++| +    .. . ..  .+.      +.+++++.+.|+||+. ++|..++++.++ ++.++.++......+.++.
T Consensus       210 I~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT-f~GaGva~~aaS-~~Nl~~~~~~~~~~tIgpd  287 (425)
T PF12897_consen  210 IFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT-FPGAGVAFFAAS-EANLAWIKKHLSVQTIGPD  287 (425)
T ss_dssp             EEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS-EEEEE--HHHHHHHHHHHHHH-S---
T ss_pred             EEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc-cCCcceeeeecC-HHHHHHHHHHhcCceeCcc
Confidence            9999999 2    11 1 11  111      5788999999999997 699999999999 7999999999998899999


Q ss_pred             HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccccc-ccccccceeeCCCCCeeEEEecCCCc
Q 024997          128 RECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIA-PQYCTYFKKIRPPSPAYAWVKCEREE  206 (259)
Q Consensus       128 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (259)
                      .++|..-++++.....| ...|+.++.+.++-+++.+.+.|++       +|. +.  ....+..|.||+|++++..+..
T Consensus       288 KvNQLRHvrff~d~~gG-v~aHM~kHa~il~PKF~~V~~~L~~-------~L~~~~--~ia~Wt~P~GGYFIsld~~~G~  357 (425)
T PF12897_consen  288 KVNQLRHVRFFKDAEGG-VRAHMRKHAAILRPKFEAVLEILEE-------ELGDGL--GIASWTKPKGGYFISLDVLDGT  357 (425)
T ss_dssp             HHHHHHHHHHHHSHHTH-HHHHHHHHHHHHHHHHHHHHHHHHH-------HHGTGG--TSEEE---SBSS-EEEEESTT-
T ss_pred             HHHHHHHHHHhcChhhH-HHHHHHHHHHHHhhhHHHHHHHHHH-------hcCCCC--CeeEecCCCCceEEEEecCCCh
Confidence            99999999999964212 4567888888888888888888874       233 21  1256789999999999998877


Q ss_pred             hHHHHHHHHHcCeeeec-CCcccC----CCCeEEEEeec-ChhhHHHHHHHHHHHh
Q 024997          207 DKDCYGILKAAKIIGRE-GKKFRA----EARFVRLSLLK-SQDDFDLLLHRLDELI  256 (259)
Q Consensus       207 ~~~~~~ll~~~gi~~~~-g~~f~~----~~~~~Ris~~~-~~~~~~~~~~~l~~~l  256 (259)
                      ...+.+++++.||.+.| |..|..    ....+||+.+. +.++++.+++.+.-.+
T Consensus       358 AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv  413 (425)
T PF12897_consen  358 AKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCV  413 (425)
T ss_dssp             HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHH
Confidence            88999999999999999 888873    25689999987 8899999999887543

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.91  E-value=3e-23  Score=183.11  Aligned_cols=236  Identities=13%  Similarity=0.080  Sum_probs=171.1

Q ss_pred             CCCcccchhhhhhccCccc--------------ccc--cChhhhcccCC----CCceEEEEcCCCCCCh-hhH-------
Q 024997            1 MPFYPLYQEQTDYFESVDY--------------KFE--GEANLWGNASS----DTHLVEFVTAPNNPDG-QMN-------   52 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------------~~~--~d~~~l~~~~~----~~~~~i~i~~p~NPtG-~~~-------   52 (259)
                      +|.|+.|....++.|.+..              +|.  +|++.|++.++    +++++|++++|||||| .++       
T Consensus       123 ~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~  202 (460)
T PRK13238        123 NYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRA  202 (460)
T ss_pred             CCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHH
Confidence            5889999998888887652              355  89999999986    4799999999999998 554       


Q ss_pred             -HHhhcCCCcEEEeecccc-CCC-C-----CCCC--CCCCCeEEEeccccccCCCcceEE------EEEecCHHHHHHHH
Q 024997           53 -KAVLKGPYAKSIYDHAYF-WPH-F-----APIP--APADEELMIFTISKLTGHAGSRFG------WAVIKDEAVYQRMS  116 (259)
Q Consensus        53 -~~la~~~~~~vi~De~y~-~~~-~-----~~~~--~~~~~~i~~~S~SK~~g~~G~R~G------~i~~~~~~~~~~~~  116 (259)
                       .++|+++|++||+|++++ +.. +     ....  ...+-+..++|++|++.++|+|+|      +++++++++.++++
T Consensus       203 I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~  282 (460)
T PRK13238        203 VYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECR  282 (460)
T ss_pred             HHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhh
Confidence             388999999999999773 211 0     0011  111113345778888877788863      55656468888887


Q ss_pred             Hhh----hhhcCCC-CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeC
Q 024997          117 AYI----SLNTMGV-SRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIR  191 (259)
Q Consensus       117 ~~~----~~~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  191 (259)
                      ...    ...+.+. +...|.+++..+++..   .+++    .+...++++.+.+.|++.+              +++..
T Consensus       283 ~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~---~~~~----~~~~~~~~~~l~~~L~~~G--------------~~~~~  341 (460)
T PRK13238        283 TLCILYEGFPTYGGLAGRDMEALAVGLYEGM---DEDY----LAYRIGQVEYLGEGLEEAG--------------VPIQT  341 (460)
T ss_pred             hcccccCCcccccCcHHHHHHHHHhhHHHhh---ChHH----HHHHHHHHHHHHHHHHHCC--------------CCeEc
Confidence            663    2224444 4555887777776421   2223    3333446788888888754              66778


Q ss_pred             CCCCeeEEEecCCC----------chHHHHHHHHHcCeeeecCCcccCC------------CCeEEEEeec---ChhhHH
Q 024997          192 PPSPAYAWVKCERE----------EDKDCYGILKAAKIIGREGKKFRAE------------ARFVRLSLLK---SQDDFD  246 (259)
Q Consensus       192 ~~~~~~~~~~~~~~----------~~~~~~~ll~~~gi~~~~g~~f~~~------------~~~~Ris~~~---~~~~~~  246 (259)
                      |.+|+|+++++...          +.+++..++++.||.+.|+..|..+            ...+||++.+   +.+.++
T Consensus       342 p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~  421 (460)
T PRK13238        342 PAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMD  421 (460)
T ss_pred             cCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHH
Confidence            99999999998652          4678999999999999999888731            4789999977   999999


Q ss_pred             HHHHHHHHHhh
Q 024997          247 LLLHRLDELIS  257 (259)
Q Consensus       247 ~~~~~l~~~l~  257 (259)
                      ++.++|+++.+
T Consensus       422 ~~~~~l~~~~~  432 (460)
T PRK13238        422 YVAEALKAVKE  432 (460)
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

>PRK07049 methionine gamma-lyase; Validated

Probab=99.90  E-value=1.5e-22  Score=177.59  Aligned_cols=243  Identities=14%  Similarity=0.172  Sum_probs=162.9

Q ss_pred             CCCcccchhhh----hhccCccccc--ccChhhhcccC-----CCCceEEEEcCCCCCChhhHH-----HhhcC------
Q 024997            1 MPFYPLYQEQT----DYFESVDYKF--EGEANLWGNAS-----SDTHLVEFVTAPNNPDGQMNK-----AVLKG------   58 (259)
Q Consensus         1 ~P~y~~~~~~~----~~~g~~~~~~--~~d~~~l~~~~-----~~~~~~i~i~~p~NPtG~~~~-----~la~~------   58 (259)
                      +|+|+.|...+    ...|.+...+  ..|++.+++.+     ++++++|++++||||||.+++     ++++.      
T Consensus       129 ~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~  208 (427)
T PRK07049        129 QPLYGGTETLLAKTFRNFGVGAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQG  208 (427)
T ss_pred             CCCcccHHHHHHHHHHhcCcEEEEEeCCCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhccc
Confidence            58999997764    3457664333  35566666554     257899999999999999983     56655      


Q ss_pred             CCcEEEeeccccCCC-CCCCCCCCCCeEEEeccccccC-CCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 024997           59 PYAKSIYDHAYFWPH-FAPIPAPADEELMIFTISKLTG-HAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFK  136 (259)
Q Consensus        59 ~~~~vi~De~y~~~~-~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~  136 (259)
                      +++++|+||+|..+- ..++  ..+.+++++|+||.+| ++|+|+||++++ +++++++.......+.+++++.|+++.+
T Consensus       209 ~~~~vvvDety~~~~~~~pl--~~g~divv~S~SK~~gG~~glr~G~vv~~-~~l~~~l~~~~~~~g~~ls~~~a~l~~r  285 (427)
T PRK07049        209 HRPIIACDNTLLGPVFQKPL--EHGADLSVYSLTKYVGGHSDLVAGAVLGR-KALIRQVRALRSAIGTQLDPHSCWMLGR  285 (427)
T ss_pred             CCCEEEEECCccccccCCcc--ccCCCEEEEcCceeecCCCCcEEEEEECC-HHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence            789999999984221 1122  2345789999999998 699999999988 7999999988877778899999988766


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccc---ccccc---ceeeCCCCCeeEEEecCCCchHHH
Q 024997          137 LLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAP---QYCTY---FKKIRPPSPAYAWVKCEREEDKDC  210 (259)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  210 (259)
                      .++         .+..++++..+++..+.+.|++.+.+.....|+   .....   ++......|..+.+.++. +.+.+
T Consensus       286 ~L~---------tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~-~~~~~  355 (427)
T PRK07049        286 SLE---------TLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKG-GQAAA  355 (427)
T ss_pred             CCC---------hHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcC-CHHHH
Confidence            665         456667888999999999999998766444442   11111   111111234455566653 34445


Q ss_pred             HHHHHHcCeee---ecCCcc----------------------cCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          211 YGILKAAKIIG---REGKKF----------------------RAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       211 ~~ll~~~gi~~---~~g~~f----------------------~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      .++++.-.+..   .-|...                      +..++.+|||++-  |+.+++++-|.+.|++
T Consensus       356 ~~f~~~l~l~~~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al~~  426 (427)
T PRK07049        356 FRFLNALQIFKLAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIGI--EHPDDLIADLAQALDA  426 (427)
T ss_pred             HHHHHcCcccEEcccCCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeCc--CCHHHHHHHHHHHHhc
Confidence            55555444422   222100                      0125679999987  4455666666666654

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.90  E-value=2.3e-22  Score=175.95  Aligned_cols=231  Identities=14%  Similarity=0.088  Sum_probs=160.1

Q ss_pred             chhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccccCCCC-
Q 024997            7 YQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYFWPHF-   74 (259)
Q Consensus         7 ~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~~~~~-   74 (259)
                      |...++..|.++.      .+.+|++++++.++++++++++++||||||.+++     ++|+++|+++|+|++|..... 
T Consensus       126 ~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~  205 (401)
T PRK10874        126 WLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFP  205 (401)
T ss_pred             HHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCccccccc
Confidence            4555666676652      2467889999999889999999999999999983     889999999999999831111 


Q ss_pred             CCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh---------------------hhcCCCCHHHHHH
Q 024997           75 APIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS---------------------LNTMGVSRECQLR  133 (259)
Q Consensus        75 ~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~q~~  133 (259)
                      ..+ ...+.++++.|++|.+|.+|  +||++++ +++++.+.....                     .....++.+.+.+
T Consensus       206 ~~~-~~~~~d~~~~s~~K~~gp~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~a  281 (401)
T PRK10874        206 ADV-QALDIDFYAFSGHKLYGPTG--IGVLYGK-SELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIG  281 (401)
T ss_pred             CCc-hhcCCCEEEEecccccCCCc--cEEEEEc-hHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHH
Confidence            122 23346788999999999888  6999998 688887643220                     0011233345555


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHH
Q 024997          134 AFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGI  213 (259)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  213 (259)
                      ..++++...+    .-..+..++.++.++.+.+.|+++++             +....+..+..+++.++..+.+.+.+.
T Consensus       282 l~~al~~l~~----~g~~~~~~~~~~l~~~l~~~l~~~~g-------------~~~~~~~~~~i~~~~~~~~~~~~~~~~  344 (401)
T PRK10874        282 LSAALEWLAD----IDINQAESWSRSLATLAEDALAKLPG-------------FRSFRCQDSSLLAFDFAGVHHSDLVTL  344 (401)
T ss_pred             HHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHHhcCCC-------------EEEeCCCCCcEEEEEECCcCHHHHHHH
Confidence            5555553211    11334566777778888888876654             222333344455556665555666677


Q ss_pred             HHHcCeeeecCCcccC-------CCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          214 LKAAKIIGREGKKFRA-------EARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       214 l~~~gi~~~~g~~f~~-------~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      |+++||.+++|..+..       ..+++|+|++.  ++++++.+++.|++++++
T Consensus       345 L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~  398 (401)
T PRK10874        345 LAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALEL  398 (401)
T ss_pred             HHHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence            7889999999987642       24799999975  899999999999987753

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.90  E-value=1.8e-22  Score=173.90  Aligned_cols=228  Identities=12%  Similarity=0.033  Sum_probs=163.1

Q ss_pred             CCCcccchhhhhhccCccccc-ccChhhhcccCC----CCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc
Q 024997            1 MPFYPLYQEQTDYFESVDYKF-EGEANLWGNASS----DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~-~~d~~~l~~~~~----~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~   70 (259)
                      +|+|+.+...++..|.++..+ .+|++.|++.++    ++++++++++++||||...     .++|+++|+++|+||+|.
T Consensus       107 ~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~  186 (360)
T TIGR00858       107 ALNHASLIDGCRLSGARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHG  186 (360)
T ss_pred             ccccHHHHHHHHhcCCceEEecCCCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECccc
Confidence            478888888888888766433 467888888773    3578889999999999775     389999999999999982


Q ss_pred             ----CCCCCC---CCC--CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhh--cCCCCHHHHHHHHHHHH
Q 024997           71 ----WPHFAP---IPA--PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN--TMGVSRECQLRAFKLLK  139 (259)
Q Consensus        71 ----~~~~~~---~~~--~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~  139 (259)
                          .....+   ..+  ..+++|+++|+||.+|.+|   ||++++ +++++.+.......  ..+.++..+.++..+++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g---G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~  262 (360)
T TIGR00858       187 TGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG---AYVAGS-QALIDYLINRARTLIFSTALPPAVAAAALAALE  262 (360)
T ss_pred             ccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC---cEEEcC-HHHHHHHHHhCccceecCCCCHHHHHHHHHHHH
Confidence                111111   111  2467999999999999877   999998 69998886544322  23345555556666665


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcC
Q 024997          140 VVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAK  218 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~g  218 (259)
                      ..      ......+++++++++.+.+.|++++              +.. .+.++.++|+.++.. +.+.+.+.|.++|
T Consensus       263 ~~------~~~~~~~~~~~~~~~~l~~~L~~~~--------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  321 (360)
T TIGR00858       263 LI------QEEPWRREKLLALIARLRAGLEALG--------------FTL-MPSCTPIVPVIIGDNASALALAEELQQQG  321 (360)
T ss_pred             HH------hhCHHHHHHHHHHHHHHHHHHHHcC--------------Ccc-CCCCCCEEEEEeCCHHHHHHHHHHHHHCC
Confidence            31      1234568899999999999998754              222 244677888888643 3344555556789


Q ss_pred             eeeecCCcccC--CCCeEEEEeec--ChhhHHHHHHHHH
Q 024997          219 IIGREGKKFRA--EARFVRLSLLK--SQDDFDLLLHRLD  253 (259)
Q Consensus       219 i~~~~g~~f~~--~~~~~Ris~~~--~~~~~~~~~~~l~  253 (259)
                      |.+.++..+..  +.+++|++++.  ++++++.++++|+
T Consensus       322 I~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~  360 (360)
T TIGR00858       322 IFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK  360 (360)
T ss_pred             eeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence            99998766542  35689999975  8999999998863

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.90  E-value=1.8e-22  Score=177.04  Aligned_cols=225  Identities=12%  Similarity=0.082  Sum_probs=153.7

Q ss_pred             hhhhhccCcccccc-cChhhhcccC----CCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc----cCCCC
Q 024997            9 EQTDYFESVDYKFE-GEANLWGNAS----SDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY----FWPHF   74 (259)
Q Consensus         9 ~~~~~~g~~~~~~~-~d~~~l~~~~----~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y----~~~~~   74 (259)
                      ..++..|.++..+. .|.+.+++.+    .+++++|++++|+||||.+++     ++|+++|+++|+||+|    |++..
T Consensus       147 ~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g  226 (410)
T PRK13392        147 EGIRRSGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARG  226 (410)
T ss_pred             HHHHHcCCeEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCC
Confidence            34444565543332 2344444443    357899999999999999873     8899999999999999    22222


Q ss_pred             CCCC---CCCCC-eEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhh--hcCCCCHHHHHHHHHHHHHHHhcCCcc
Q 024997           75 APIP---APADE-ELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL--NTMGVSRECQLRAFKLLKVVLEDGGNN  148 (259)
Q Consensus        75 ~~~~---~~~~~-~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~  148 (259)
                      ..+.   +..++ .++++|+||.||.+|   ||++++ +++++.+++....  .+.+.+++.|.++.++|+..     + 
T Consensus       227 ~g~~~~~~~~~~~div~~tlsK~~g~~G---G~~~~~-~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~-----~-  296 (410)
T PRK13392        227 GGIAERDGLMDRIDMIQGTLAKAFGCLG---GYIAAS-ADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHL-----K-  296 (410)
T ss_pred             CchhhhccCCCCCcEEEEEChHhhhccc---chhhcC-HHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHH-----h-
Confidence            2211   22223 588999999999998   999988 7999988876543  24456667888888888742     1 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHcCeeeecCCc
Q 024997          149 IFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAKIIGREGKK  226 (259)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~g~~  226 (259)
                      ...+.+++++++++++.+.|++++              +...+++++++ .+.++..  ..++...+++++||.++++..
T Consensus       297 ~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~~~-~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~  361 (410)
T PRK13392        297 TSQTERDAHQDRVAALKAKLNANG--------------IPVMPSPSHIV-PVMVGDPTLCKAISDRLMSEHGIYIQPINY  361 (410)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHcC--------------CCCCCCCCCEE-EEEeCCHHHHHHHHHHHHHhCCEEEeeeCC
Confidence            223456788999999999998754              33334455543 3333321  234555566678999998653


Q ss_pred             ccC--CCCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          227 FRA--EARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       227 f~~--~~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      ...  +..++|+++.  .++++++.+++.|.+++++
T Consensus       362 p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~  397 (410)
T PRK13392        362 PTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDR  397 (410)
T ss_pred             CCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            332  3578999984  4999999999999988753

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.89  E-value=6.7e-22  Score=172.88  Aligned_cols=231  Identities=14%  Similarity=0.069  Sum_probs=156.7

Q ss_pred             chhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccccCCCCC
Q 024997            7 YQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYFWPHFA   75 (259)
Q Consensus         7 ~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~~~~~~   75 (259)
                      |...++..|.++.      .+.+|++.|++.++++++++++++||||||.+++     ++|+++|+++++|++|..... 
T Consensus       123 ~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~-  201 (398)
T TIGR03392       123 WLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHG-  201 (398)
T ss_pred             HHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhccCceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCC-
Confidence            4555566677652      2457888999999889999999999999999983     889999999999999931111 


Q ss_pred             CCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh--------------------hhcCC-CCHHHHHH
Q 024997           76 PIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS--------------------LNTMG-VSRECQLR  133 (259)
Q Consensus        76 ~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~--------------------~~~~~-~~~~~q~~  133 (259)
                      ++. ...+.++++.|++|.+|.+|  +||++++ +++++.+.....                    ....+ ++.+...+
T Consensus       202 ~~~~~~~~~d~~~~s~~K~~gp~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a  278 (398)
T TIGR03392       202 PPDVQALDIDFYAFSGHKLYGPTG--IGVLYGK-TELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIG  278 (398)
T ss_pred             CCChhhcCCCEEEEecccccCCCc--eEEEEEc-HHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHH
Confidence            111 22345788899999998777  8999999 688877643210                    00112 22234444


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHH
Q 024997          134 AFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGI  213 (259)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  213 (259)
                      +.++++...+    .-+.+..++..+.++.+.+.|++++++             ....+..+..+++.++..+.+.+.+.
T Consensus       279 ~~~al~~l~~----~g~~~i~~~~~~l~~~l~~~l~~l~g~-------------~~~~~~~~~i~~~~~~~~~~~~l~~~  341 (398)
T TIGR03392       279 LSAALEWLTD----IDIAAAEAWSVSLADLAEERLAQLPGF-------------RSFRCPGSSLLAFDFAGVHHSDLAAL  341 (398)
T ss_pred             HHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHHhcCCCe-------------EEeCCCCCcEEEEEeCCcCHHHHHHH
Confidence            4444443211    123355677777888888888776542             22222334455556665545566667


Q ss_pred             HHHcCeeeecCCcccC-------CCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          214 LKAAKIIGREGKKFRA-------EARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       214 l~~~gi~~~~g~~f~~-------~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      |+++||.+++|..+..       ..+++|+|+..  ++++++.+++.|++++++
T Consensus       342 L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~  395 (398)
T TIGR03392       342 LAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALEL  395 (398)
T ss_pred             HHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence            7889999999986642       14799999975  899999999999988753

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.89  E-value=1.9e-22  Score=166.37  Aligned_cols=238  Identities=15%  Similarity=0.170  Sum_probs=175.4

Q ss_pred             CCcccchhhhhhccCcc--------cccccChhhhcccC----CC-CceEEEEcCCCCCChhhHH--------HhhcCCC
Q 024997            2 PFYPLYQEQTDYFESVD--------YKFEGEANLWGNAS----SD-THLVEFVTAPNNPDGQMNK--------AVLKGPY   60 (259)
Q Consensus         2 P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~----~~-~~~~i~i~~p~NPtG~~~~--------~la~~~~   60 (259)
                      |.||.|.......|...        .+|.+|.++|+..+    +. +++++++.||.||||.+++        ..|.+++
T Consensus       169 PQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~  248 (475)
T KOG0258|consen  169 PQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEG  248 (475)
T ss_pred             CCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcC
Confidence            89999999999998875        36899998888765    23 7889999999999999994        7789999


Q ss_pred             cEEEeeccc----cC--CCCCCCC------C--CCC--CeEEEecccccc-CCCcceEEEEEec--CHHHHHHHHHhhhh
Q 024997           61 AKSIYDHAY----FW--PHFAPIP------A--PAD--EELMIFTISKLT-GHAGSRFGWAVIK--DEAVYQRMSAYISL  121 (259)
Q Consensus        61 ~~vi~De~y----~~--~~~~~~~------~--~~~--~~i~~~S~SK~~-g~~G~R~G~i~~~--~~~~~~~~~~~~~~  121 (259)
                      ++++.||+|    |.  ..+.++.      +  ..+  ..+.++|.||.+ |-.|-|-||+-.-  +++..+.+.+... 
T Consensus       249 l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~s-  327 (475)
T KOG0258|consen  249 LVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLAS-  327 (475)
T ss_pred             eEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHh-
Confidence            999999999    52  2455543      1  112  366799999997 6789999998753  2467776666554 


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHhcC-----CcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCe
Q 024997          122 NTMGVSRECQLRAFKLLKVVLEDG-----GNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPA  196 (259)
Q Consensus       122 ~~~~~~~~~q~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (259)
                      ...|++...|...-..+..+..++     .....+...+.++++.+.+.+.++++.+             +.|.+++|+|
T Consensus       328 i~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~g-------------i~cn~~qGAM  394 (475)
T KOG0258|consen  328 IKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEG-------------ISCNPVQGAM  394 (475)
T ss_pred             hhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCc-------------eeeccCccce
Confidence            245666666776655554433221     1222445667788888888888888776             6778999999


Q ss_pred             eEEEecCCC--------------chHHHHHHHHHcCeeeecCCcccCC--CCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          197 YAWVKCERE--------------EDKDCYGILKAAKIIGREGKKFRAE--ARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       197 ~~~~~~~~~--------------~~~~~~~ll~~~gi~~~~g~~f~~~--~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      |++-.+.-.              |.=.+.++|+..||.++||++|++.  .-++|.+|-...  + +.+++++++-
T Consensus       395 Y~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp~~--~-~~i~~~~~fH  467 (475)
T KOG0258|consen  395 YLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILPPG--L-EIIEKFKKFH  467 (475)
T ss_pred             eecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecCch--h-HHHHHHHHHH
Confidence            999765432              3344778899999999999999974  447899985533  4 7778877664

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.89  E-value=3.1e-21  Score=166.53  Aligned_cols=230  Identities=13%  Similarity=0.133  Sum_probs=155.8

Q ss_pred             CCCcccc----hhhhhhccCcccccc-cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc
Q 024997            1 MPFYPLY----QEQTDYFESVDYKFE-GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~~~----~~~~~~~g~~~~~~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~   70 (259)
                      +|+|+..    ...+...|.++..+. .|++.+++.+++++++|++++|+||+|...     .++|+++|+++|+|++|.
T Consensus        97 ~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~  176 (366)
T PRK08247         97 SDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFY  176 (366)
T ss_pred             cCCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence            4677753    334444676654443 467889999988999999999999999886     388999999999999983


Q ss_pred             CCCCCCCCCCCCCeEEEeccccccCC-CcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcch
Q 024997           71 WPHFAPIPAPADEELMIFTISKLTGH-AGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNI  149 (259)
Q Consensus        71 ~~~~~~~~~~~~~~i~~~S~SK~~g~-~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  149 (259)
                      . .....+...+.+++++|+||.++. .+++.|+++++++++.+.+...+...+.+.+++.|+++.+.++         .
T Consensus       177 ~-~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~---------t  246 (366)
T PRK08247        177 T-PVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMK---------T  246 (366)
T ss_pred             c-ccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccC---------c
Confidence            1 111111123568999999999963 4679999998756888888877776667788888877766555         4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHH-------------H
Q 024997          150 FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILK-------------A  216 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-------------~  216 (259)
                      +..++++.+++++.+.+.|++++++..           ...++.+|+|.| .++.  .+...++++             .
T Consensus       247 l~~r~~~~~~~a~~l~~~L~~~p~v~~-----------v~~P~~gg~~sf-~~~~--~~~~~~~~~~l~~~~~~~slg~~  312 (366)
T PRK08247        247 LALRMRQHEENAKAIAAFLNEQPGVTD-----------VLYPGRGGMLSF-RLQD--EEWVNPFLKSLKLITFAESLGGV  312 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeeE-----------EecCCcCcEEEE-EECC--HHHHHHHHHcCCcceEccCCCCC
Confidence            455677889999999999998764221           113447888887 5642  233333333             2


Q ss_pred             cCeeeecCCccc------------CCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          217 AKIIGREGKKFR------------AEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       217 ~gi~~~~g~~f~------------~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      +.+.+.|++.+.            .+++.+|||++-  |+.+++++-|.+.|
T Consensus       313 ~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGl--E~~~dl~~dl~~al  362 (366)
T PRK08247        313 ESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGI--ENVEDLIADLKQAF  362 (366)
T ss_pred             ceEEECCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHH
Confidence            234455664331            135689999987  33444444444444

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.88  E-value=2.3e-21  Score=169.26  Aligned_cols=232  Identities=10%  Similarity=0.050  Sum_probs=156.2

Q ss_pred             CCCcccchhhhhhccCcccc-cccChhhhcccCCC------CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDYK-FEGEANLWGNASSD------THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~-~~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~   68 (259)
                      +|.|+.+...++..+..... ..+|+++|++.+++      ++++|++++++||||.+.     .++|+++|+++|+||+
T Consensus       129 ~~~~~s~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~  208 (393)
T TIGR01822       129 ALNHASIIDGVRLCKAKRYRYANNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDEC  208 (393)
T ss_pred             ccccHHHHHHHHhcCCceEEeCCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECC
Confidence            47788887777776655432 25788888887743      678888888999999987     3899999999999999


Q ss_pred             c-c---CCCCCC---CCC-CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhh-cC-CCCHHHHHHHHHHH
Q 024997           69 Y-F---WPHFAP---IPA-PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN-TM-GVSRECQLRAFKLL  138 (259)
Q Consensus        69 y-~---~~~~~~---~~~-~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~-~~-~~~~~~q~~~~~~l  138 (259)
                      | +   +.....   ..+ ..+.+++++|+||.++  |+|+||++++ +++++.+....... .. ..++..+.++.+++
T Consensus       209 ~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~--g~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al  285 (393)
T TIGR01822       209 HATGFLGPTGRGSHELCGVMGRVDIITGTLGKALG--GASGGFTTAR-KEVVELLRQRSRPYLFSNSLPPAVVGASIKVL  285 (393)
T ss_pred             ccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhh--CCCcEEEEeC-HHHHHHHHHhCccceecCCCCHHHHHHHHHHH
Confidence            8 3   111111   112 2246799999999975  7899999999 79999887643322 22 23444445556666


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-C-chHHHHHHHHH
Q 024997          139 KVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-E-EDKDCYGILKA  216 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ll~~  216 (259)
                      +..      ...++.+++++++++.+.+.|+..+              +....+.++ ++.+.+.. . ..++...++ +
T Consensus       286 ~~~------~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~-~~~i~~~~~~~~~~l~~~L~-~  343 (393)
T TIGR01822       286 EML------EASNELRDRLWANTRYFRERMEAAG--------------FDIKPADHP-IIPVMLYDAVLAQRFARRLL-E  343 (393)
T ss_pred             HHH------hcCHHHHHHHHHHHHHHHHHHHHcC--------------CCCCCCCCC-EEEEEeCCHHHHHHHHHHHH-H
Confidence            531      1245567889999999999988653              222223333 33333332 1 234444444 5


Q ss_pred             cCeeeecCCcccC---CCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          217 AKIIGREGKKFRA---EARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       217 ~gi~~~~g~~f~~---~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      +||.+. +..|..   +...+|+|++.  +++++++++++|.+++++
T Consensus       344 ~gI~v~-~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~  389 (393)
T TIGR01822       344 EGIYVT-GFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGRE  389 (393)
T ss_pred             CCeeEe-eeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            699987 555542   33579998865  899999999999988753

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.88  E-value=2.1e-21  Score=169.70  Aligned_cols=207  Identities=14%  Similarity=0.130  Sum_probs=145.3

Q ss_pred             ChhhhcccCCCCceEEEEcCCCCCChh-hH--------HHhhcCCCcEEEeeccc--cCC--CCCCCC--CCCCCeEEEe
Q 024997           24 EANLWGNASSDTHLVEFVTAPNNPDGQ-MN--------KAVLKGPYAKSIYDHAY--FWP--HFAPIP--APADEELMIF   88 (259)
Q Consensus        24 d~~~l~~~~~~~~~~i~i~~p~NPtG~-~~--------~~la~~~~~~vi~De~y--~~~--~~~~~~--~~~~~~i~~~   88 (259)
                      |+++|++.++++++++++++++||+|. .+        .++|+++|+++|+||+|  |+.  ......  +..+.   +.
T Consensus       171 d~~~l~~~i~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pd---i~  247 (396)
T PRK02627        171 DIEALKAAITDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPD---IM  247 (396)
T ss_pred             CHHHHHHhcCCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCC---EE
Confidence            788899999888999899888999994 43        28999999999999999  421  111111  21122   45


Q ss_pred             ccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 024997           89 TISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKII  168 (259)
Q Consensus        89 S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (259)
                      ||||.++ +|+|+||++++ +++++.+.......+++.+++.|+++.++++...   .+++    .++++++.+.+.+.|
T Consensus       248 t~sK~~~-~G~rig~~~~~-~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~---~~~~----~~~~~~~~~~~~~~l  318 (396)
T PRK02627        248 TLAKGLG-GGVPIGAVLAK-EKVADVFTPGDHGSTFGGNPLACAAALAVIEIIE---EEGL----LENAAEVGEYLRAKL  318 (396)
T ss_pred             EEcchhh-CCcccEEEEEc-HHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHh---hccH----HHHHHHHHHHHHHHH
Confidence            8999999 99999999999 6999888765555678899999999999998531   2233    445555555555555


Q ss_pred             HhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHH
Q 024997          169 SLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFD  246 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~  246 (259)
                      .++..    .++.     +.... ..|.++|+.+.....++...++ ++||.+.|+.     .+++|++++  .++++++
T Consensus       319 ~~~~~----~~~~-----~~~~~-~~g~~~~i~~~~~~~~~~~~l~-~~Gv~v~~~~-----~~~lRi~~~~~~~~~~i~  382 (396)
T PRK02627        319 RELLE----KYPG-----IKEVR-GLGLMIGIELDRPAAEIVKKAL-EKGLLINVTG-----DNVLRLLPPLIISKEEID  382 (396)
T ss_pred             HHHHH----hCCC-----eeeec-cCcEEEEEEecCcHHHHHHHHH-HCCeEEeecC-----CCEEEEECCcccCHHHHH
Confidence            54320    0100     22222 3578889988433345555555 5699999852     478999874  4899999


Q ss_pred             HHHHHHHHHhhh
Q 024997          247 LLLHRLDELISK  258 (259)
Q Consensus       247 ~~~~~l~~~l~~  258 (259)
                      +++++|.+++++
T Consensus       383 ~~~~~l~~~l~~  394 (396)
T PRK02627        383 EAVDRLEEVLKE  394 (396)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998864

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.88  E-value=1.9e-21  Score=168.40  Aligned_cols=226  Identities=11%  Similarity=0.099  Sum_probs=150.5

Q ss_pred             cccchhhhhhccCccc--------ccccChhhhcccCC-------CCceEEEEcCCCCCChhhH-----HHhhcCCCcEE
Q 024997            4 YPLYQEQTDYFESVDY--------KFEGEANLWGNASS-------DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKS   63 (259)
Q Consensus         4 y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~-------~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~v   63 (259)
                      |+.| ..++..|.++.        .+.+|+++|++.++       +++++|++++|+||||.+.     .++|+++|+++
T Consensus       101 ~s~~-~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~l  179 (370)
T TIGR02539       101 YTSY-VAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPL  179 (370)
T ss_pred             HHHH-HHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeE
Confidence            5555 34566676542        25578999988874       3678999999999999987     38999999999


Q ss_pred             EeeccccCCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCC--------CCHHHHHHH
Q 024997           64 IYDHAYFWPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMG--------VSRECQLRA  134 (259)
Q Consensus        64 i~De~y~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~q~~~  134 (259)
                      |+||+|-... .+.. ...+..++++|+||.++ +|.|+||++++ +++++.+.+........        .....+.++
T Consensus       180 ivDea~~~g~-~~~~~~~~~~di~v~s~sK~~~-~~g~~G~l~~~-~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (370)
T TIGR02539       180 LLNCAYTVGR-MPVSAKEIGADFIVGSGHKSMA-ASGPCGVLGMS-EEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTM  256 (370)
T ss_pred             EEECccccCC-cCCCHHHcCCCEEEeeCccccc-CCCCEEEEEEC-HHHHhhhcccccCCccceeeeecccccccHHHHH
Confidence            9999993111 1111 12345788899999998 67789999999 69999888765432111        111134444


Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccee--eCCCCCeeEEEecCCC-------
Q 024997          135 FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKK--IRPPSPAYAWVKCERE-------  205 (259)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------  205 (259)
                      ...++.     ..+++.+..+.++. .+++.+.|++++              +..  ..+..+.+++++++..       
T Consensus       257 ~~al~~-----~~~~l~~~~~~~~~-~~~l~~~L~~~g--------------~~~~~~~~s~t~~v~~~~~~~~~~~~~~  316 (370)
T TIGR02539       257 MASFPH-----VVERVKRWDEEVKK-TRWFVAELEDIG--------------FIQLGQKPKEHDLVKFETPGFHEIAQKH  316 (370)
T ss_pred             HHHHHH-----HHHHHHHHHHHHHH-HHHHHHHHHhCC--------------cEEEccCCCcCceEEEECCchhHHhhhh
Confidence            444542     12344444444444 457888888765              221  1345677777776532       


Q ss_pred             --chHHHHHHHHHcCee-eecCCcccCCCCeEEEEe-ecChhhHHHHHHHHHHHhhh
Q 024997          206 --EDKDCYGILKAAKII-GREGKKFRAEARFVRLSL-LKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       206 --~~~~~~~ll~~~gi~-~~~g~~f~~~~~~~Ris~-~~~~~~~~~~~~~l~~~l~~  258 (259)
                        ....+.+.|.++||. +++    +. ++++|+|+ +.++++++++++.|++++++
T Consensus       317 ~~~~~~~~~~L~e~GI~~ir~----~~-~~~iRis~~~~t~e~i~~l~~~L~~~~~~  368 (370)
T TIGR02539       317 KRRGYFLYEELKKRGIHGIRS----GQ-TKYFKLSVYGLTKEQVEYVVDSFEEIVEE  368 (370)
T ss_pred             ccccHHHHHHHHhCCCccccC----Cc-ceEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence              123466667778997 554    22 46999996 34999999999999998764

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.88  E-value=1.8e-21  Score=169.60  Aligned_cols=212  Identities=14%  Similarity=0.098  Sum_probs=143.8

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChh-hH--------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEecc
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQ-MN--------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFTI   90 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~-~~--------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~   90 (259)
                      .|++.+++.+++++++|+++.++||+|. ++        .++|+++|+++|+||+|  |+.....+. ...+...-+.|+
T Consensus       163 ~d~~~l~~~l~~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~  242 (389)
T PRK01278        163 GDIEALKAAITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAV  242 (389)
T ss_pred             CCHHHHHHhhCCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEEE
Confidence            5788899988888899888877888883 33        28999999999999999  321111111 011111115689


Q ss_pred             ccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh
Q 024997           91 SKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISL  170 (259)
Q Consensus        91 SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  170 (259)
                      ||.++ +|+|+||++++ +++.+.+.......+.+.+++.|.++.+.++...+   ++    ..+.++++.+.+.+.|+.
T Consensus       243 sK~l~-~G~~ig~~~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~---~~----~~~~~~~~~~~l~~~l~~  313 (389)
T PRK01278        243 AKGIG-GGFPLGACLAT-EEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILA---PG----FLDNVQRMGLYLKQKLEG  313 (389)
T ss_pred             ehhcc-CCcceEEEEEc-HHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhh---hH----HHHHHHHHHHHHHHHHHH
Confidence            99998 89999999999 69988887666667788999999999888874311   11    234445555555555544


Q ss_pred             cCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHHH
Q 024997          171 SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDLL  248 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~~  248 (259)
                      +..    .+++    .+....+ .|.++++.+...+.++..+++ ++||.+.|+     +.+++||++.  .++++++++
T Consensus       314 l~~----~~~~----~~~~v~g-~G~~~~i~~~~~~~~~~~~l~-~~GV~~~p~-----~~~~lR~~p~~~~~~~~i~~~  378 (389)
T PRK01278        314 LVD----RFPD----VIEEVRG-KGLLLGLKCVVPNRDLVQALR-DEGLLTVGA-----GDNVVRLLPPLIITEEEIDEA  378 (389)
T ss_pred             HHh----hCCC----ceeeEec-ccEEEEEEEecCHHHHHHHHH-HCCeEEeec-----CCCEEEEeCCcccCHHHHHHH
Confidence            321    0110    1222333 567777777543345555655 569999985     2579999964  489999999


Q ss_pred             HHHHHHHhhh
Q 024997          249 LHRLDELISK  258 (259)
Q Consensus       249 ~~~l~~~l~~  258 (259)
                      +++|.+++++
T Consensus       379 l~~l~~~l~~  388 (389)
T PRK01278        379 LERLERAAES  388 (389)
T ss_pred             HHHHHHHHHh
Confidence            9999998864

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.88  E-value=3.8e-21  Score=167.94  Aligned_cols=232  Identities=9%  Similarity=0.037  Sum_probs=156.6

Q ss_pred             CCCcccchhhhhhccCcccccc-cChhhhcccCC----C--CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDYKFE-GEANLWGNASS----D--THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~-~d~~~l~~~~~----~--~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~   68 (259)
                      +|+|+.+...++..+..+..+. .|++++++.++    +  +++++++.+.+||+|...     .++|+++|+++|+||+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~  212 (397)
T PRK06939        133 ALNHASIIDGVRLCKAKRYRYANNDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDS  212 (397)
T ss_pred             hhhhHHHHHHHHhcCCceEEeCCCCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECc
Confidence            5889988888888887664432 57777777663    3  677877777789999865     3899999999999999


Q ss_pred             c-cC---CCCC---CCCC-CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhh--cCCCCHHHHHHHHHHH
Q 024997           69 Y-FW---PHFA---PIPA-PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN--TMGVSRECQLRAFKLL  138 (259)
Q Consensus        69 y-~~---~~~~---~~~~-~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l  138 (259)
                      | ++   ....   ...+ ..+.+++++|+||.++  |+|+||++++ +++++.+.......  ....++..+.++.+++
T Consensus       213 ~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~--g~r~G~v~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al  289 (397)
T PRK06939        213 HAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALG--GASGGYTAGR-KEVIDWLRQRSRPYLFSNSLAPAIVAASIKVL  289 (397)
T ss_pred             ccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhC--ccCceEEEeC-HHHHHHHHHhCccccccCCCCHHHHHHHHHHH
Confidence            9 31   1111   1112 2245799999999994  5699999999 69999887653321  1223344455555556


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-C-chHHHHHHHHH
Q 024997          139 KVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-E-EDKDCYGILKA  216 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ll~~  216 (259)
                      +..     . ...+.+++++++++.+.+.|+.++              +....+.++++.+ .++. . +.++...++ +
T Consensus       290 ~~~-----~-~~~~~~~~~~~~~~~l~~~L~~~~--------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~-~  347 (397)
T PRK06939        290 ELL-----E-ESDELRDRLWENARYFREGMTAAG--------------FTLGPGEHPIIPV-MLGDAKLAQEFADRLL-E  347 (397)
T ss_pred             HHH-----h-cCHHHHHHHHHHHHHHHHHHHHcC--------------CCcCCCCCCEEEE-EECCHHHHHHHHHHHH-H
Confidence            532     1 124567889999999999998753              2223445555433 3432 1 234555555 5


Q ss_pred             cCeeeecCCcccC---CCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          217 AKIIGREGKKFRA---EARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       217 ~gi~~~~g~~f~~---~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      +||.+.++. |+.   +.+++|++++.  +++++++++++|++++++
T Consensus       348 ~gI~v~~~~-~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~  393 (397)
T PRK06939        348 EGVYVIGFS-FPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKE  393 (397)
T ss_pred             CCceEeeeC-CCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            699998643 432   34689999853  899999999999998864

>PLN02483 serine palmitoyltransferase

Probab=99.88  E-value=1e-20  Score=168.61  Aligned_cols=236  Identities=14%  Similarity=0.069  Sum_probs=157.5

Q ss_pred             CCCcccchhhhhhccCcccccc-cChhhhcccCC-------CC-----ceEEEEcCC-CCCChhhH-----HHhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDYKFE-GEANLWGNASS-------DT-----HLVEFVTAP-NNPDGQMN-----KAVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~-~d~~~l~~~~~-------~~-----~~~i~i~~p-~NPtG~~~-----~~la~~~~~   61 (259)
                      +|+|+.+...++..|.++..+. .|++.|++.++       ++     .++++++++ .|++|.+.     .++|+++|+
T Consensus       192 ~~~h~s~~~~~~~~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~  271 (489)
T PLN02483        192 SLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKA  271 (489)
T ss_pred             chhhHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCC
Confidence            4788888888888888775553 34555554431       22     255555555 59999887     389999999


Q ss_pred             EEEeeccc-c---CCCCC---CCC--CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhh---hcCCCCHH
Q 024997           62 KSIYDHAY-F---WPHFA---PIP--APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL---NTMGVSRE  129 (259)
Q Consensus        62 ~vi~De~y-~---~~~~~---~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~---~~~~~~~~  129 (259)
                      ++|+||+| +   ++...   ...  ...+.+|+++||||+||.+|   ||++++ +++++.+......   .....++.
T Consensus       272 ~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~G---G~i~~~-~~li~~l~~~~~~~~~~~~~~p~~  347 (489)
T PLN02483        272 YVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCG---GYIAGS-KELIQYLKRTCPAHLYATSMSPPA  347 (489)
T ss_pred             EEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccCc---eEEEcC-HHHHHHHHHhCccccccCCcCHHH
Confidence            99999999 2   22111   111  23467899999999999888   999999 7999999876432   11223334


Q ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--ch
Q 024997          130 CQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--ED  207 (259)
Q Consensus       130 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  207 (259)
                      .| ++.+.++.....+..+...+.+++++++++.+.+.|++++              +....+.++..+|+.+...  ..
T Consensus       348 ~~-~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G--------------~~v~~~~~sp~~~l~l~~~~~~~  412 (489)
T PLN02483        348 VQ-QVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMG--------------FEVLGDNDSPVMPIMLYNPAKIP  412 (489)
T ss_pred             HH-HHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCC--------------CcccCCCCCCEEEEEECCHHHHH
Confidence            44 3455554332112234555668899999999999999864              2233344445555544322  23


Q ss_pred             HHHHHHHHHcCeeeecCCcccC---CCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          208 KDCYGILKAAKIIGREGKKFRA---EARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       208 ~~~~~ll~~~gi~~~~g~~f~~---~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      ++...++ ++||.+++ ..|+.   ..+.+|++++.  +++++++++++|++++.
T Consensus       413 ~~~~~Ll-~~GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~  465 (489)
T PLN02483        413 AFSRECL-KQNVAVVV-VGFPATPLLLARARICISASHSREDLIKALEVISEVGD  465 (489)
T ss_pred             HHHHHHH-HCCcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            5555555 57999997 55532   24789999964  89999999999998764

>PLN02822 serine palmitoyltransferase

Probab=99.88  E-value=5.5e-21  Score=170.06  Aligned_cols=199  Identities=12%  Similarity=0.062  Sum_probs=148.9

Q ss_pred             eEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc-c---CCCCCCCC---C--CCCCeEEEeccccccCCCcceEE
Q 024997           37 LVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY-F---WPHFAPIP---A--PADEELMIFTISKLTGHAGSRFG  102 (259)
Q Consensus        37 ~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y-~---~~~~~~~~---~--~~~~~i~~~S~SK~~g~~G~R~G  102 (259)
                      ++|++..++|++|.+.+     ++|++||+++|+||+| +   +.....+.   +  ..+.+++++||||.+|.+|   |
T Consensus       247 ~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G---G  323 (481)
T PLN02822        247 RYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG---G  323 (481)
T ss_pred             EEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC---e
Confidence            78888899999999983     8999999999999999 3   32221111   1  2356799999999999999   9


Q ss_pred             EEEecCHHHHHHHHHhhhhhcCCC--CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 024997          103 WAVIKDEAVYQRMSAYISLNTMGV--SRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIA  180 (259)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  180 (259)
                      |++++ +++++.++......+++.  ++..|.++.++++..     +. ..+.+++++++++.+.+.|+++.+       
T Consensus       324 ~i~g~-~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l-----~~-~~~~~~~l~~~~~~l~~~L~~~~g-------  389 (481)
T PLN02822        324 FCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-----ED-NPSVLAKLKENIALLHKGLSDIPG-------  389 (481)
T ss_pred             EEEcC-HHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHH-----Hh-CHHHHHHHHHHHHHHHHHHHhcCC-------
Confidence            99999 799998876554444443  477788887888742     11 245788999999999999987643       


Q ss_pred             ccccccceeeCCCCCeeEEEecCCC------c----hHHHHHHHHHcCeeeecC--CcccC--CCCeEEEEee--cChhh
Q 024997          181 PQYCTYFKKIRPPSPAYAWVKCERE------E----DKDCYGILKAAKIIGREG--KKFRA--EARFVRLSLL--KSQDD  244 (259)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~ll~~~gi~~~~g--~~f~~--~~~~~Ris~~--~~~~~  244 (259)
                            +....+.+++++++.+++.      +    .+++.++++++||.+.|+  ..|+.  .+.++|++++  .++++
T Consensus       390 ------~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~ed  463 (481)
T PLN02822        390 ------LSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESD  463 (481)
T ss_pred             ------cccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHH
Confidence                  3344566788888888642      1    356777777889999986  44442  2468999876  49999


Q ss_pred             HHHHHHHHHHHhhh
Q 024997          245 FDLLLHRLDELISK  258 (259)
Q Consensus       245 ~~~~~~~l~~~l~~  258 (259)
                      |++++++|++++++
T Consensus       464 I~~~~~~l~~~~~~  477 (481)
T PLN02822        464 ILKASESLKRVAAS  477 (481)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988753

>PRK06460 hypothetical protein; Provisional

Probab=99.87  E-value=7.9e-21  Score=164.42  Aligned_cols=168  Identities=14%  Similarity=0.127  Sum_probs=122.2

Q ss_pred             CCcccchhhhhhccCcccccccCh-hhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccccCCCCC
Q 024997            2 PFYPLYQEQTDYFESVDYKFEGEA-NLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYFWPHFA   75 (259)
Q Consensus         2 P~y~~~~~~~~~~g~~~~~~~~d~-~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~~~~~~   75 (259)
                      |+|..|...++..|.++..+..+. +.+++.++++++++++++||||||.+++     ++|+++|+++|+|++|..+ ..
T Consensus        96 ~ty~~~~~~~~~~G~~v~~~~~~~~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~-~~  174 (376)
T PRK06460         96 RSYRFFTDYLKNWGVNVDASNPGSDNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTP-IN  174 (376)
T ss_pred             cHHHHHHHHHHhhCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcc-cc
Confidence            456666777777887765554443 3344545678999999999999999983     8899999999999998422 11


Q ss_pred             CCCCCCCCeEEEeccccccC-CCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHH
Q 024997           76 PIPAPADEELMIFTISKLTG-HAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGY  154 (259)
Q Consensus        76 ~~~~~~~~~i~~~S~SK~~g-~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  154 (259)
                      ..+...+.+++++|+||.++ +.|.|.||++++ +++++.+++.....+.+.++...+   .+++      ..++++.++
T Consensus       175 ~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~-~~l~~~l~~~~~~~g~~~~~~~a~---~~l~------~~~~l~~r~  244 (376)
T PRK06460        175 QKPLELGADIVVHSASKFLAGHNDVIAGLAAGY-GKLLNVIDQMRRTLGTSLDPHAAY---LTLR------GIKTLKIRM  244 (376)
T ss_pred             CChhhcCCCEEEeecceeccCCCCceEEEEecC-HHHHHHHHHHHHhcCCCCCHHHHH---HHHh------chhhHHHHH
Confidence            11112346799999999985 334789999998 799999988777666666654332   2333      335788889


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcccccc
Q 024997          155 NTMKKRWENLSKIISLSNRFSLQEIA  180 (259)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~~~~~~  180 (259)
                      +++.++++.+.+.|++.+.+.....|
T Consensus       245 ~~~~~n~~~l~~~L~~~p~v~~v~yp  270 (376)
T PRK06460        245 DVINRNAEQIAEFLEGHPKVVKVYYP  270 (376)
T ss_pred             HHHHHHHHHHHHHHHcCCCccEEECC
Confidence            99999999999999998876544443

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.87  E-value=6.8e-21  Score=166.71  Aligned_cols=208  Identities=12%  Similarity=0.038  Sum_probs=148.0

Q ss_pred             ChhhhcccCCCCceEEEEcCCCCCChhhH----------HHhhcCCCcEEEeeccc--cCC--CCCCCCCCCCCeEEEec
Q 024997           24 EANLWGNASSDTHLVEFVTAPNNPDGQMN----------KAVLKGPYAKSIYDHAY--FWP--HFAPIPAPADEELMIFT   89 (259)
Q Consensus        24 d~~~l~~~~~~~~~~i~i~~p~NPtG~~~----------~~la~~~~~~vi~De~y--~~~--~~~~~~~~~~~~i~~~S   89 (259)
                      |++.+++.+.+++++|+++ |.||+|.++          .++|+++|+++|+||+|  |+.  ...... ..+...-+.|
T Consensus       173 d~~~l~~~l~~~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~-~~~~~pdi~s  250 (403)
T PRK05093        173 DLAAVKAVIDDHTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYM-HYGVTPDILT  250 (403)
T ss_pred             CHHHHHHHhcCCeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhh-hcCCCCCEEE
Confidence            6788888887778885555 899888765          28999999999999999  321  111111 1111111679


Q ss_pred             cccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHH
Q 024997           90 ISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIIS  169 (259)
Q Consensus        90 ~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  169 (259)
                      |||.++ +|+|+||++++ +++++.+.......+.+.+++.|.++.+.|+...   .    .+.++.++++.+.+.+.|+
T Consensus       251 ~sK~l~-~G~rig~vv~~-~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~---~----~~~~~~~~~~~~~l~~~L~  321 (403)
T PRK05093        251 SAKALG-GGFPIGAMLTT-AEIASHFKVGTHGSTYGGNPLACAVAEAVFDIIN---T----PEVLEGVKARRQRFVDGLQ  321 (403)
T ss_pred             eccccc-CCcceEEEEEc-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh---h----ccHHHHHHHHHHHHHHHHH
Confidence            999998 99999999999 6999988765555567889999999999887431   1    2346788899999999988


Q ss_pred             hcCCCccccccccccccceeeCCCCCeeEEEecCCC----chHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChh
Q 024997          170 LSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE----EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQD  243 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~  243 (259)
                      ++.. ..         ++....+..|+++|+.++..    +.++...++ ++||.+.|+     +.+++||+++  .+++
T Consensus       322 ~~~~-~~---------~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~-~~Gv~v~~~-----g~~~lRl~~~~~~~~~  385 (403)
T PRK05093        322 KINQ-KY---------GVFSEIRGMGLLIGAELKPQYKGRARDFLNAAA-EEGVMVLVA-----GPDVLRFAPSLVIEEA  385 (403)
T ss_pred             HHHh-hC---------CCeEeEeeCceEEEEEecCcchhHHHHHHHHHH-HCCeEEecC-----CCCEEEEeCCCCCCHH
Confidence            7531 00         01122445688899987532    234555555 579999873     3479999754  3899


Q ss_pred             hHHHHHHHHHHHhhh
Q 024997          244 DFDLLLHRLDELISK  258 (259)
Q Consensus       244 ~~~~~~~~l~~~l~~  258 (259)
                      ++++++++|.+++.+
T Consensus       386 ~i~~~~~~l~~~l~~  400 (403)
T PRK05093        386 DIDEGLARFEKAVAK  400 (403)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998753

>PRK10534 L-threonine aldolase; Provisional

Probab=99.87  E-value=7.1e-21  Score=162.60  Aligned_cols=200  Identities=12%  Similarity=0.066  Sum_probs=139.8

Q ss_pred             ccccChhhhcccCCC------CceEEEEcCCCCCChhhHH--------HhhcCCCcEEEeeccc-cCCC---CCCCC---
Q 024997           20 KFEGEANLWGNASSD------THLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIYDHAY-FWPH---FAPIP---   78 (259)
Q Consensus        20 ~~~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~De~y-~~~~---~~~~~---   78 (259)
                      .|.+|+++|++.+++      +++++++|||+|  |.+++        ++|+++++++++||+| |...   .....   
T Consensus       108 ~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~~--G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~  185 (333)
T PRK10534        108 DGTLPLDKVAAKIKPDDIHFARTRLLSLENTHN--GKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEIT  185 (333)
T ss_pred             CCCCCHHHHHHhhcccCcCcccceEEEEecCCC--CeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHH
Confidence            478889999988865      588999997764  99873        5788999999999998 3210   11111   


Q ss_pred             CCCCCeEEEeccccccCCCcceEE-EEEecCHHHHHHHHHhhhhhcCC--CCHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q 024997           79 APADEELMIFTISKLTGHAGSRFG-WAVIKDEAVYQRMSAYISLNTMG--VSRECQLRAFKLLKVVLEDGGNNIFEFGYN  155 (259)
Q Consensus        79 ~~~~~~i~~~S~SK~~g~~G~R~G-~i~~~~~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~  155 (259)
                      ...+.  ++.||||.+|++   +| |++++ +++++.++........+  .+.+.|.++...++.        . .+.++
T Consensus       186 ~~~~~--~~~s~SK~~~~~---~G~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~--------~-~~~~~  250 (333)
T PRK10534        186 QYCDS--FTICLSKGLGTP---VGSLLVGN-RDYIKRARRWRKMTGGGMRQAGILAAAGLYALKH--------N-VARLQ  250 (333)
T ss_pred             hcCCE--EEEEeEcCCCCc---ccceEEcC-HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh--------h-HHHHH
Confidence            11222  234899998754   68 68778 79999998877654322  234556666666652        1 22344


Q ss_pred             HHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEE
Q 024997          156 TMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVR  235 (259)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~R  235 (259)
                      +..++++.+.+.|++++              +.+.++ .++|+|++++..+.+.+.++|.++||.++|+.       ++|
T Consensus       251 ~~~~~r~~l~~~L~~~g--------------~~~~~~-~~nfv~~~~~~~~~~~~~~~l~~~gi~v~~~~-------~~r  308 (333)
T PRK10534        251 EDHDNAAWLAEQLREAG--------------ADVMRQ-DTNMLFVRVGEEQAAALGEYMRERNVLINASP-------IVR  308 (333)
T ss_pred             HHHHHHHHHHHHHHhCC--------------CccCCC-CceEEEEECCchhHHHHHHHHHHcCeeecCCc-------eEE
Confidence            45556788888888764              333444 68899999874334566788888999999853       578


Q ss_pred             EEee--cChhhHHHHHHHHHHHhhh
Q 024997          236 LSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       236 is~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      ++..  .+++++++++++|++++.+
T Consensus       309 l~~~~r~t~e~~~~~~~~l~~~~~~  333 (333)
T PRK10534        309 LVTHLDVSREQLAEVVAHWRAFLAR  333 (333)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHhcC
Confidence            8774  3899999999999998764

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.87  E-value=1.8e-20  Score=162.86  Aligned_cols=227  Identities=15%  Similarity=0.091  Sum_probs=155.0

Q ss_pred             CCCcccchhhhhhccCcc----------ccccc----ChhhhcccCCCCceEEEEcCCCCCChhh-H--------HHhhc
Q 024997            1 MPFYPLYQEQTDYFESVD----------YKFEG----EANLWGNASSDTHLVEFVTAPNNPDGQM-N--------KAVLK   57 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~----------~~~~~----d~~~l~~~~~~~~~~i~i~~p~NPtG~~-~--------~~la~   57 (259)
                      +|+|..|...+...+...          ..+..    |++.|++.+++++++++++.++||+|.. +        .++|+
T Consensus       122 ~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~  201 (379)
T TIGR00707       122 ENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAAVIVEPIQGEGGVNPASAEFLKALREICK  201 (379)
T ss_pred             CCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeEEEEEccccCCCCccCCHHHHHHHHHHHH
Confidence            467777766655543321          11222    7888988887788887886556677753 2        37899


Q ss_pred             CCCcEEEeeccc--cCCC--CCCC--CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHH
Q 024997           58 GPYAKSIYDHAY--FWPH--FAPI--PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQ  131 (259)
Q Consensus        58 ~~~~~vi~De~y--~~~~--~~~~--~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q  131 (259)
                      ++|+++|+||+|  |...  ....  .+..+.   +.||||.++ +|+|+||++++ +++++.+.........+.+++.|
T Consensus       202 ~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d---~~t~sK~~~-~G~riG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  276 (379)
T TIGR00707       202 DKDALLIFDEVQTGIGRTGKFFAYEHYGIEPD---IITLAKGLG-GGVPIGATLAK-EEVAEAFTPGDHGSTFGGNPLAC  276 (379)
T ss_pred             HcCCEEEEeccccCCCccchhhhHHhcCCCCC---EEEEccccc-CCcccEEEEEc-HHHHhhhcCCCCCCCCCCCHHHH
Confidence            999999999999  4221  1111  122222   337999999 99999999999 69999987754445677899999


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHH
Q 024997          132 LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCY  211 (259)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (259)
                      .++.++++...   .    ...++.++++++.+.+.|+++.. ...         +.. .+..|.++|+.++.. ...+.
T Consensus       277 ~aa~aaL~~~~---~----~~~~~~~~~~~~~~~~~l~~~~~-~~~---------~~~-~~~~g~~~~~~~~~~-~~~~~  337 (379)
T TIGR00707       277 AAALAVLEVIE---K----ERLLENVKEKGDYFKERLEELGK-NYP---------NKE-VRGKGLMLGIELEAP-CKDIV  337 (379)
T ss_pred             HHHHHHHHHHH---h----hhHHHHHHHHHHHHHHHHHHHHh-hCC---------CCc-cccCceEEEEEecCc-HHHHH
Confidence            99998887431   1    23466777788888777775421 000         111 223577888887653 44555


Q ss_pred             HHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHHHHHHHHHHh
Q 024997          212 GILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDLLLHRLDELI  256 (259)
Q Consensus       212 ~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~~~~~l~~~l  256 (259)
                      +.|.++||.++|+     +.+++||++.  .+++++++++++|++.+
T Consensus       338 ~~l~~~Gv~v~~~-----~~~~lRi~~~~~~t~~~i~~~~~~l~~~~  379 (379)
T TIGR00707       338 KKALEKGLLVNCA-----GPKVLRFLPPLIITKEEIDEAVSALEEAI  379 (379)
T ss_pred             HHHHHCCcEEeeC-----CCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence            5567899999984     2478999974  48999999999998764

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.87  E-value=4.2e-21  Score=158.94  Aligned_cols=234  Identities=14%  Similarity=0.101  Sum_probs=173.6

Q ss_pred             CCCcccchhhhhhccCccccc--------ccChhhhcccC---CCCceEEEEcCCCCCChhhHH--------HhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDYKF--------EGEANLWGNAS---SDTHLVEFVTAPNNPDGQMNK--------AVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~--------~~d~~~l~~~~---~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~   61 (259)
                      +|+||+|..+++..|.++..|        .+|.+.+.+.+   .++..+++-..+|||||.-+.        ++.++.|.
T Consensus       127 ~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~l  206 (396)
T COG1448         127 DPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGL  206 (396)
T ss_pred             CCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            799999999999999987322        57777776666   346667677778999999982        77889999


Q ss_pred             EEEeeccc--cCCCC----CC---CCCCCCCeEEEeccccccCCCcceEEEEE--ecCHHHH----HHHHHhhhhhcCCC
Q 024997           62 KSIYDHAY--FWPHF----AP---IPAPADEELMIFTISKLTGHAGSRFGWAV--IKDEAVY----QRMSAYISLNTMGV  126 (259)
Q Consensus        62 ~vi~De~y--~~~~~----~~---~~~~~~~~i~~~S~SK~~g~~G~R~G~i~--~~~~~~~----~~~~~~~~~~~~~~  126 (259)
                      +.+.|-+|  |+...    ..   +.......++..|+||.||+-|-|+|.+.  +.+++..    .+++...+....++
T Consensus       207 ip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnP  286 (396)
T COG1448         207 IPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNP  286 (396)
T ss_pred             eeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCC
Confidence            99999999  42111    11   11233449999999999999999999754  4444444    44566666666777


Q ss_pred             CHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC
Q 024997          127 SRECQLRAFKLLKVVL-EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE  205 (259)
Q Consensus       127 ~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (259)
                      +.-...++..+|+++. ....+..+..+++++.+.|..+.+.|+...-       ++.   |..+..+.|||.+..+   
T Consensus       287 P~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~-------~~~---f~~i~~Q~GMFsy~Gl---  353 (396)
T COG1448         287 PAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGA-------PRN---FDFIISQRGMFSYTGL---  353 (396)
T ss_pred             chhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-------Ccc---cchHhhcCceeecCCC---
Confidence            7777777777776432 1123445677888888888888888886331       111   6667889999998755   


Q ss_pred             chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHh
Q 024997          206 EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELI  256 (259)
Q Consensus       206 ~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l  256 (259)
                      +.+.+..+.+++||.++.     .+    |||++. ++.+++...+.+.+++
T Consensus       354 s~~QV~rLree~~IY~v~-----sG----Ri~vaGl~~~ni~~va~ai~~v~  396 (396)
T COG1448         354 SPEQVDRLREEFGIYLVA-----SG----RINVAGLNTSNIDYVAKAIAAVL  396 (396)
T ss_pred             CHHHHHHHHHhccEEEec-----CC----eeeeccCChhhHHHHHHHHHhhC
Confidence            689999999999999886     33    999988 9999999999988763

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.87  E-value=7.2e-21  Score=166.19  Aligned_cols=208  Identities=11%  Similarity=0.081  Sum_probs=148.0

Q ss_pred             ChhhhcccCCCCceEEEEcCCCCCChhhHH---------HhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEeccc
Q 024997           24 EANLWGNASSDTHLVEFVTAPNNPDGQMNK---------AVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFTIS   91 (259)
Q Consensus        24 d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~---------~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~S   91 (259)
                      |++.|++.++++++++++++|+||+|.+++         ++|+++|+++|+||+|  |+.....+. +..+...-+.++|
T Consensus       175 d~~~l~~~i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~s  254 (396)
T PRK04073        175 DLEALKAAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILG  254 (396)
T ss_pred             CHHHHHHhcccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEEec
Confidence            678888888888899888888999999862         7899999999999999  422111111 1111112245689


Q ss_pred             cccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhc
Q 024997           92 KLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLS  171 (259)
Q Consensus        92 K~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  171 (259)
                      |.+|..|+|+||++++ +++.+.+.......+++.+++.|+++.+.|+...   .++    ..++.+++.+.+.+.|+++
T Consensus       255 K~lg~gg~~ig~~~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~---~~~----l~~~~~~~~~~l~~~L~~l  326 (396)
T PRK04073        255 KALGGGVFPISCVAAN-RDILGVFTPGSHGSTFGGNPLACAVSIAALEVLE---EEK----LPERSLELGEYFKEQLKEI  326 (396)
T ss_pred             ccccCCCCcceEEEEc-HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH---hcC----HHHHHHHHHHHHHHHHHhh
Confidence            9999888999999999 7999988765555678889999999999997531   112    3456677788888888765


Q ss_pred             CCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEe--ecChhhHHHHH
Q 024997          172 NRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSL--LKSQDDFDLLL  249 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~--~~~~~~~~~~~  249 (259)
                      ..   .        .+....+. |.++++++.....++... |.++||.+.+.     +++++||++  ..+++++++++
T Consensus       327 ~~---~--------~i~~~~~~-g~~~~~~~~~~~~~~~~~-l~~~Gv~~~~~-----~~~~iRi~p~l~~t~e~i~~~~  388 (396)
T PRK04073        327 DN---P--------MIKEVRGR-GLFIGVELNEPARPYCEA-LKEEGLLCKET-----HETVIRFAPPLVITKEELDWAF  388 (396)
T ss_pred             cC---C--------cccceecc-eEEEEEEecchHHHHHHH-HHHCCeEEecC-----CCCEEEEECCcccCHHHHHHHH
Confidence            31   0        02223333 566788776433444444 55689998762     247999995  45999999999


Q ss_pred             HHHHHHhh
Q 024997          250 HRLDELIS  257 (259)
Q Consensus       250 ~~l~~~l~  257 (259)
                      ++|+++++
T Consensus       389 ~~l~~~l~  396 (396)
T PRK04073        389 EKIKAVLS  396 (396)
T ss_pred             HHHHHHhC
Confidence            99998874

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.86  E-value=4.8e-20  Score=161.39  Aligned_cols=237  Identities=11%  Similarity=0.009  Sum_probs=161.9

Q ss_pred             CCCcccchhh-----hhhccCcc-------c--ccccChhhhcccC-CCCceEEEEcCCCCCChhhH---HHhhcCCCcE
Q 024997            1 MPFYPLYQEQ-----TDYFESVD-------Y--KFEGEANLWGNAS-SDTHLVEFVTAPNNPDGQMN---KAVLKGPYAK   62 (259)
Q Consensus         1 ~P~y~~~~~~-----~~~~g~~~-------~--~~~~d~~~l~~~~-~~~~~~i~i~~p~NPtG~~~---~~la~~~~~~   62 (259)
                      +|+|+.+...     ++..|...       .  .+.+|++++++.+ .++++++++++|+||+..-+   .++|+++|++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~~~~~~~~I~~l~~~~~~~  191 (402)
T cd00378         112 DLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYPRPIDFKRFREIADEVGAY  191 (402)
T ss_pred             cCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCcccCCCcCHHHHHHHHHhcCCE
Confidence            4677766444     44445321       2  4778999999988 46889989999999876444   4889999999


Q ss_pred             EEeecccc-C---CCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHH-HHHHHH
Q 024997           63 SIYDHAYF-W---PHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQ-LRAFKL  137 (259)
Q Consensus        63 vi~De~y~-~---~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q-~~~~~~  137 (259)
                      +|+|++|+ +   .......-. ...++++|+||.+  +|+|.||++++++++++.+.........+.+.+.+ .++..+
T Consensus       192 li~D~a~~~g~~~~g~~~~~~~-~~dv~~~s~sK~l--~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a  268 (402)
T cd00378         192 LLVDMAHVAGLVAGGVFPNPLP-GADVVTTTTHKTL--RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVA  268 (402)
T ss_pred             EEEEccchhhhhhcccCCCccc-CCcEEEeccccCC--CCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHH
Confidence            99999973 1   111111111 3357899999987  68899999998448998887765433333333333 333333


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceee-CCCCCeeEEEecCCC--chHHHHHHH
Q 024997          138 LKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKI-RPPSPAYAWVKCERE--EDKDCYGIL  214 (259)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~ll  214 (259)
                      +...    ......+.+++++++++.+.+.|++++              +... .+.+++++|++++..  +.+.+.++|
T Consensus       269 l~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~l  330 (402)
T cd00378         269 LKEA----LEPEFKAYAKQVVENAKALAEALKERG--------------FKVVSGGTDNHLVLVDLRPKGITGKAAEDAL  330 (402)
T ss_pred             HHHH----hhHHHHHHHHHHHHHHHHHHHHHHhCC--------------CeEeecCCCCeEEEEeCCccCCCHHHHHHHH
Confidence            4321    112456677889999999999998764              3332 456789999999742  456677788


Q ss_pred             HHcCeeeecCCc----ccC-CCCeEEEEeec------ChhhHHHHHHHHHHHhhh
Q 024997          215 KAAKIIGREGKK----FRA-EARFVRLSLLK------SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       215 ~~~gi~~~~g~~----f~~-~~~~~Ris~~~------~~~~~~~~~~~l~~~l~~  258 (259)
                      +++||.+.++..    ++. ...++|+++..      +.++++.+++.|++++.+
T Consensus       331 ~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~  385 (402)
T cd00378         331 EEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKD  385 (402)
T ss_pred             HHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence            899999986432    211 34689999844      489999999999997753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK02948 cysteine desulfurase; Provisional

Probab=99.86  E-value=4.5e-21  Score=166.71  Aligned_cols=219  Identities=14%  Similarity=0.057  Sum_probs=149.3

Q ss_pred             cccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc-cCCCCCCCCCCCCCeEEEecccccc
Q 024997           21 FEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY-FWPHFAPIPAPADEELMIFTISKLT   94 (259)
Q Consensus        21 ~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y-~~~~~~~~~~~~~~~i~~~S~SK~~   94 (259)
                      +.+|++.|++.++++++++++++|+||||.+++     ++|+++|+++++|+++ |+.....+ ...+.++++.|+||.+
T Consensus       124 ~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~-~~~~~d~~~~s~~K~~  202 (381)
T PRK02948        124 GLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDV-FEMGIDSLSVSAHKIY  202 (381)
T ss_pred             CCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccCc-ccCCCCEEEecHHhcC
Confidence            467889999998888999999999999999994     8899999999999866 43211122 2345788999999999


Q ss_pred             CCCcceEEEEEecCHHH-HHHHHH----hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHH
Q 024997           95 GHAGSRFGWAVIKDEAV-YQRMSA----YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIIS  169 (259)
Q Consensus        95 g~~G~R~G~i~~~~~~~-~~~~~~----~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  169 (259)
                      |.+|  +|++++.+ ++ +..+..    ........++.+.+.++..+++..     .+++++.+++++++++++.+.|+
T Consensus       203 gp~G--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~-----~~~~~~~~~~~~~~~~~l~~~L~  274 (381)
T PRK02948        203 GPKG--VGAVYINP-QVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENI-----LKNMQEESLRFKELRSYFLEQIQ  274 (381)
T ss_pred             CCCc--EEEEEEcC-CCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence            9889  89998884 54 111110    001123457778888888888742     23567788999999999999998


Q ss_pred             hcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccC------------------CC
Q 024997          170 LSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRA------------------EA  231 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~------------------~~  231 (259)
                      +++ +.+....+  .+      ..-+..+-+.++..+.+.+...|+++||.++.|..+..                  ..
T Consensus       275 ~~~-~~v~~~~~--~~------~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~  345 (381)
T PRK02948        275 TLP-LPIEVEGH--ST------SCLPHIIGVTIKGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAK  345 (381)
T ss_pred             cCC-CCEEEeCC--Cc------cCcCCEEEEEeCCCCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhC
Confidence            764 11110000  00      00011222233333344444556788999999875321                  14


Q ss_pred             CeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          232 RFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       232 ~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      +++|+|++.  ++++++.+++.|+++++
T Consensus       346 ~~lRis~~~~~t~~di~~l~~~l~~~~~  373 (381)
T PRK02948        346 QFVRFSFGQQTTKDQIDTTIHALETIGN  373 (381)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            789999975  89999999999988765

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.86  E-value=3.2e-20  Score=161.59  Aligned_cols=231  Identities=10%  Similarity=0.011  Sum_probs=156.7

Q ss_pred             CCCcccchhhhhhccCccccc-ccChhhhcccCC----CCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc-
Q 024997            1 MPFYPLYQEQTDYFESVDYKF-EGEANLWGNASS----DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY-   69 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~-~~d~~~l~~~~~----~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y-   69 (259)
                      +|+|+.+...+...|.+...+ .+|++++++.+.    ++++++++++++||||.+.     .++|+++|+++|+||+| 
T Consensus       124 ~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~  203 (385)
T TIGR01825       124 ELNHASIIDGLRLTKATKKIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHG  203 (385)
T ss_pred             ccccHHHHHHHHhcCCceEEeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECccc
Confidence            467887777777667665433 578877877663    3688888888899999877     38999999999999999 


Q ss_pred             -c--CCCCC----CCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh-hh-cCCCCHHHHHHHHHHHHH
Q 024997           70 -F--WPHFA----PIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS-LN-TMGVSRECQLRAFKLLKV  140 (259)
Q Consensus        70 -~--~~~~~----~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~-~~-~~~~~~~~q~~~~~~l~~  140 (259)
                       +  .....    .+.-..+.+++++||||.+|.+|   ||++++ +++++.+..... .. +...+++.|.++.++++.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~  279 (385)
T TIGR01825       204 SGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVG---GYAAGH-KELIEYLKNRARPFLFSTAQPPAVVAALAAAVDE  279 (385)
T ss_pred             ccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcCC---CEEecC-HHHHHHHHHhCccccccCCCCHHHHHHHHHHHHH
Confidence             2  11110    11112567999999999998777   999988 699998876543 21 223456777777777763


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHcC
Q 024997          141 VLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAK  218 (259)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~g  218 (259)
                      .     .+. .+..+++.++++.+.+.|++++              ++...+.++ ++.+.+...  +.++...++ ++|
T Consensus       280 ~-----~~~-~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~-~~g  337 (385)
T TIGR01825       280 L-----QRS-PELMERLWDNTRFFKAGLGKLG--------------YDTGGSETP-ITPVVIGDEKAAQEFSRRLF-DEG  337 (385)
T ss_pred             H-----hcC-HHHHHHHHHHHHHHHHHHHHcC--------------CCCCCCCCC-EEEEEECCHHHHHHHHHHHH-HCC
Confidence            2     111 2356677788888999888753              223344444 333334321  234555555 459


Q ss_pred             eeeecCCcccC---CCCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          219 IIGREGKKFRA---EARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       219 i~~~~g~~f~~---~~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      |.++ +..|+.   +.+++|+++.  .+++++++++++|++++++
T Consensus       338 i~v~-~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~  381 (385)
T TIGR01825       338 IFAQ-SIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKE  381 (385)
T ss_pred             cEEc-ccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence            9885 444442   3468999874  4999999999999998753

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.86  E-value=3.2e-20  Score=162.78  Aligned_cols=210  Identities=13%  Similarity=0.084  Sum_probs=148.3

Q ss_pred             cChhhhcccCC----CCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc----cCCCCCCCC---CC-CCCeE
Q 024997           23 GEANLWGNASS----DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY----FWPHFAPIP---AP-ADEEL   85 (259)
Q Consensus        23 ~d~~~l~~~~~----~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y----~~~~~~~~~---~~-~~~~i   85 (259)
                      .|++.|++.++    +++++|++++|+||+|.+.     .++|+++|+++|+||+|    |++....+.   +. .+.++
T Consensus       162 ~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~di  241 (407)
T PRK09064        162 NDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDI  241 (407)
T ss_pred             CCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeE
Confidence            46667776663    4678999999999999886     38999999999999999    233222221   21 23478


Q ss_pred             EEeccccccCCCcceEEEEEecCHHHHHHHHHhhhh--hcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 024997           86 MIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL--NTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWEN  163 (259)
Q Consensus        86 ~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (259)
                      +++||||.||++|   ||++++ +++++.+......  .+.+.++..+.++.+.++..     +. ....+++++++++.
T Consensus       242 v~~t~sKa~g~~G---G~~~~~-~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~-----~~-~~~~~~~~~~~~~~  311 (407)
T PRK09064        242 IEGTLAKAFGVMG---GYIAGS-AALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHL-----KE-SNEERERHQERAAK  311 (407)
T ss_pred             EEEecchhhhccC---ceEecC-HHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHH-----hc-CHHHHHHHHHHHHH
Confidence            8999999999888   999998 6999988765432  24466777777777777642     11 13346788899999


Q ss_pred             HHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHcCeeeecCCcccC--CCCeEEEEee
Q 024997          164 LSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAKIIGREGKKFRA--EARFVRLSLL  239 (259)
Q Consensus       164 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~g~~f~~--~~~~~Ris~~  239 (259)
                      +.+.|++++              +....+. +.++++.+...  ..++...+++++||.+++......  +.+++|+|+.
T Consensus       312 l~~~L~~~g--------------~~~~~~~-~~iv~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~  376 (407)
T PRK09064        312 LKAALDAAG--------------IPVMPNE-SHIVPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPT  376 (407)
T ss_pred             HHHHHHHcC--------------CCCCCCC-CCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeC
Confidence            999998754              2222333 34455555432  234555566667999998653322  3468999985


Q ss_pred             c--ChhhHHHHHHHHHHHhh
Q 024997          240 K--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       240 ~--~~~~~~~~~~~l~~~l~  257 (259)
                      .  ++++++.+++.|++++.
T Consensus       377 ~~~t~edi~~l~~~l~~~~~  396 (407)
T PRK09064        377 PFHTDEMIDHLVEALVEVWA  396 (407)
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            3  89999999999998865

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.86  E-value=5.2e-20  Score=160.13  Aligned_cols=231  Identities=12%  Similarity=0.051  Sum_probs=159.0

Q ss_pred             CCCcccchhhhhhccCccccc-ccChhhhcccCCC---CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc-c
Q 024997            1 MPFYPLYQEQTDYFESVDYKF-EGEANLWGNASSD---THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY-F   70 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~-~~d~~~l~~~~~~---~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y-~   70 (259)
                      +|+|+.+...++..|.++..+ ..|++.+++.+++   .+.++++.+++||||...     .++|+++|+++|+||+| +
T Consensus       130 ~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~  209 (385)
T PRK05958        130 KLNHASLIDGARLSRARVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGT  209 (385)
T ss_pred             CccCHHHHHHHHhcCCceEEeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccc
Confidence            478888888888777765433 3477888888743   466767777899999876     38999999999999999 2


Q ss_pred             ---CCCCCC-C---C-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhh--hcCCCCHHHHHHHHHHHHH
Q 024997           71 ---WPHFAP-I---P-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL--NTMGVSRECQLRAFKLLKV  140 (259)
Q Consensus        71 ---~~~~~~-~---~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~  140 (259)
                         ...... .   . ...+++++++|+||.+|.+|   ||++++ +++.+.+......  .+.+.++..+.++.++++.
T Consensus       210 g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G---g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~  285 (385)
T PRK05958        210 GVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSG---AAVLGS-ETLIDYLINRARPFIFTTALPPAQAAAARAALRI  285 (385)
T ss_pred             cccCCCCCchHHhhCCCCCCceEEEEechhhcccCC---cEEEcC-HHHHHHHHHhCccceecCCCCHHHHHHHHHHHHH
Confidence               211111 0   0 23456899999999999877   999988 6998887654322  1233455555556566663


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCe
Q 024997          141 VLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKI  219 (259)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi  219 (259)
                      .     ... .+..+++.++++.+.+.|++++              ++...+ .+.++++.++.. +...+.+.|.++||
T Consensus       286 ~-----~~~-~~~~~~~~~~~~~l~~~L~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gI  344 (385)
T PRK05958        286 L-----RRE-PERRERLAALIARLRAGLRALG--------------FQLMDS-QSAIQPLIVGDNERALALAAALQEQGF  344 (385)
T ss_pred             H-----hcC-HHHHHHHHHHHHHHHHHHHHcC--------------CCcCCC-CCCEEEEEeCCHHHHHHHHHHHHHCCc
Confidence            2     111 4567888999999999998754              222344 445667777642 23334444557899


Q ss_pred             eeecCCcccC--CCCeEEEEeec--ChhhHHHHHHHHHHHh
Q 024997          220 IGREGKKFRA--EARFVRLSLLK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       220 ~~~~g~~f~~--~~~~~Ris~~~--~~~~~~~~~~~l~~~l  256 (259)
                      .++++..+..  +++++|+|++.  +++++++++++|++++
T Consensus       345 ~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~  385 (385)
T PRK05958        345 WVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL  385 (385)
T ss_pred             eEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence            9998654432  35799999973  8999999999998764

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.86  E-value=4.2e-20  Score=158.64  Aligned_cols=231  Identities=15%  Similarity=0.085  Sum_probs=158.7

Q ss_pred             CCCcccchhhhhhccCccccc-ccChhhhcccCC-----CCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc
Q 024997            1 MPFYPLYQEQTDYFESVDYKF-EGEANLWGNASS-----DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY   69 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~-~~d~~~l~~~~~-----~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y   69 (259)
                      +|.|+.+...++..|.+...+ .+|.+.+++.++     ++++++++++|+||||...     .++|+++|+++|+|++|
T Consensus        92 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~  171 (349)
T cd06454          92 SLNHASIIDGIRLSGAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAH  171 (349)
T ss_pred             hhhhHHHHHHHHHcCCceEEecCCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccc
Confidence            367777777777778776543 457777887773     3578888899999999887     38999999999999998


Q ss_pred             -c---CCCCC---CCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhh--cCCCCHHHHHHHHHHHH
Q 024997           70 -F---WPHFA---PIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN--TMGVSRECQLRAFKLLK  139 (259)
Q Consensus        70 -~---~~~~~---~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~  139 (259)
                       +   .+...   ... ...+.+++++|+||.++.+|   ||++.+ +++.+.+.......  +...+++.+.++.+.++
T Consensus       172 ~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~  247 (349)
T cd06454         172 SVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG---GYIAGS-KELIDYLRSYARGFIFSTSLPPAVAAAALAALE  247 (349)
T ss_pred             cccccCCCCCChhhhccccccCcEEEeechhhhcccC---CEEECC-HHHHHHHHHhchhhhccCCCCHHHHHHHHHHHH
Confidence             2   11111   111 23467899999999998766   999988 68888877654322  23456666667777776


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecC-CCchHHHHHHHHHcC
Q 024997          140 VVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCE-REEDKDCYGILKAAK  218 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~g  218 (259)
                      ..     .. ....+++++++++.+.+.|++++              +....+.++...++.++ ..+.+.+.+.|.++|
T Consensus       248 ~~-----~~-~~~~~~~~~~~~~~l~~~l~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g  307 (349)
T cd06454         248 VL-----QG-GPERRERLQENVRYLRRGLKELG--------------FPVGGSPSHIIPPLIGDDPAKAVAFSDALLERG  307 (349)
T ss_pred             HH-----hc-CHHHHHHHHHHHHHHHHHHHhcC--------------CcccCCCCCcEEEEeCCChHHHHHHHHHHHhCC
Confidence            42     11 45567888899999999888753              22223334444444343 223344555555679


Q ss_pred             eeeecCCccc--CCCCeEEEEeec--ChhhHHHHHHHHHHH
Q 024997          219 IIGREGKKFR--AEARFVRLSLLK--SQDDFDLLLHRLDEL  255 (259)
Q Consensus       219 i~~~~g~~f~--~~~~~~Ris~~~--~~~~~~~~~~~l~~~  255 (259)
                      |.++++....  .+.+++|++++.  +++++++++++|+++
T Consensus       308 I~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         308 IYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             ceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            9998863221  124799999975  899999999999864

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.86  E-value=3.9e-20  Score=162.19  Aligned_cols=229  Identities=17%  Similarity=0.087  Sum_probs=155.7

Q ss_pred             cchhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeecccc-CCC
Q 024997            6 LYQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYF-WPH   73 (259)
Q Consensus         6 ~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~-~~~   73 (259)
                      +|...++..|.++.      ++.+|+++|++.++++++++++++|+||||.+++     ++|+++|+++++|++|. +..
T Consensus       129 ~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~  208 (406)
T PRK09295        129 PWQMLCARVGAELRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHH  208 (406)
T ss_pred             HHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCCCcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCcc
Confidence            45555566676542      2457888999999889999999999999999983     88999999999999983 211


Q ss_pred             CCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh----------------------hhcCCCCHHHH
Q 024997           74 FAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS----------------------LNTMGVSRECQ  131 (259)
Q Consensus        74 ~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~q  131 (259)
                      ...+ ...+.++++.|++|.+|.+|  +||++++ +++++.+.....                      .....++....
T Consensus       209 ~~~~-~~~~~D~~~~s~~K~~gp~G--~G~l~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~  284 (406)
T PRK09295        209 PVDV-QALDCDFYVFSGHKLYGPTG--IGILYVK-EALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGI  284 (406)
T ss_pred             ccCc-hhcCCCEEEeehhhccCCCC--cEEEEEc-hHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHH
Confidence            1122 23456799999999988777  8999999 688776532100                      01112344455


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCC--CCCeeEEEecCCCchHH
Q 024997          132 LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP--PSPAYAWVKCEREEDKD  209 (259)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  209 (259)
                      .++.++++...+    .-+++..++.++..+.+.+.|++++++.+             ..+  ..++ +.+.++..+.+.
T Consensus       285 ~~l~~al~~~~~----~g~~~i~~~~~~l~~~l~~~l~~~~~~~~-------------~~~~~~~~i-v~~~~~~~~~~~  346 (406)
T PRK09295        285 IGLGAALDYVSA----LGLNNIAEYEQNLMHYALSQLESVPDLTL-------------YGPQNRLGV-IAFNLGKHHAYD  346 (406)
T ss_pred             HHHHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHHhcCCCEEE-------------eCCCCCceE-EEEEECCcCHHH
Confidence            555555553211    11345567777788888888877654322             222  2333 344455444555


Q ss_pred             HHHHHHHcCeeeecCCcccC-------CCCeEEEEeec--ChhhHHHHHHHHHHHh
Q 024997          210 CYGILKAAKIIGREGKKFRA-------EARFVRLSLLK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       210 ~~~ll~~~gi~~~~g~~f~~-------~~~~~Ris~~~--~~~~~~~~~~~l~~~l  256 (259)
                      +...|+++||.++.|..+..       .++.+|+|+..  +.++++.+++.|+++.
T Consensus       347 ~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~  402 (406)
T PRK09295        347 VGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIH  402 (406)
T ss_pred             HHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence            66778899999999886642       24689999975  8899999999998864

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.85  E-value=1.6e-19  Score=155.34  Aligned_cols=232  Identities=16%  Similarity=0.109  Sum_probs=161.7

Q ss_pred             CCccc-chhhhhhccCccc------ccccChhhhcccCC--CCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeec
Q 024997            2 PFYPL-YQEQTDYFESVDY------KFEGEANLWGNASS--DTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDH   67 (259)
Q Consensus         2 P~y~~-~~~~~~~~g~~~~------~~~~d~~~l~~~~~--~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De   67 (259)
                      |.|+. +...++..|.+..      ++.+|++++++.++  ++.+++++++++||||.+.+     ++|+++|+++|+|+
T Consensus        83 ~~~~~~~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~  162 (355)
T TIGR03301        83 GAYGERLAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDA  162 (355)
T ss_pred             CchhhHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEe
Confidence            34443 4556666776652      35778899998884  45677788999999999984     88999999999998


Q ss_pred             cc-cCCCCCCCCCCCCCeEEEecccccc-CCCcceEEEEEecCHHHHHHHHHhh-----------------hhhcCCCCH
Q 024997           68 AY-FWPHFAPIPAPADEELMIFTISKLT-GHAGSRFGWAVIKDEAVYQRMSAYI-----------------SLNTMGVSR  128 (259)
Q Consensus        68 ~y-~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~i~~~~~~~~~~~~~~~-----------------~~~~~~~~~  128 (259)
                      ++ |+.....+ ...+..++++|++|.+ |.+|  +||++++ +++++.+....                 ......++.
T Consensus       163 ~~s~g~~~~~~-~~~~~d~~~~s~~K~l~~~~G--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  238 (355)
T TIGR03301       163 MSSFGAIPIDI-EELDVDALIASANKCLEGVPG--FGFVIAR-RDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPT  238 (355)
T ss_pred             ccccCCcccch-hhcCccEEEecCCcccccCCc--eeEEEEC-HHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcH
Confidence            66 33211122 2345678899999986 5667  7999999 68888765210                 011234666


Q ss_pred             HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeC---CCCCeeEEEecCC-
Q 024997          129 ECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIR---PPSPAYAWVKCER-  204 (259)
Q Consensus       129 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-  204 (259)
                      ..+.++.++++...   .+..+.+..++++++++.+.+.|++++              +....   ..+++++|+.++. 
T Consensus       239 ~~~~a~~~al~~~~---~~g~~~~~~~~~~~~~~~~~~~L~~~g--------------~~~~~~~~~~~~~~~~~~~~~~  301 (355)
T TIGR03301       239 HTVYAFAQALEELE---AEGGVPARIARYRRNRELLVDGLRALG--------------FQPLLPERWQSPIIVSFLYPDD  301 (355)
T ss_pred             HHHHHHHHHHHHHH---HcccHHHHHHHHHHHHHHHHHHHHHcC--------------CeeecCCCCCCCcEEEEECCCC
Confidence            77777666666431   112356677888999999999998764              22111   2356677888764 


Q ss_pred             --CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHh
Q 024997          205 --EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       205 --~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l  256 (259)
                        .+.+.+.+.|.++||.+.+|..+.  .+++||++..  ++++++.+++.|++++
T Consensus       302 ~~~~~~~~~~~l~~~gi~i~~~~~~~--~~~iRis~~~~~~~~~i~~~~~~l~~~~  355 (355)
T TIGR03301       302 PDFDFDDFYQELKERGFVIYPGKLTL--ADTFRIGTIGEIDAADIERLLEAIKDAL  355 (355)
T ss_pred             CcchHHHHHHHHHHCCEEEECCcccc--ccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence              233456666778899999986554  2799999843  8999999999998764

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.85  E-value=1.9e-19  Score=156.88  Aligned_cols=207  Identities=9%  Similarity=0.080  Sum_probs=140.9

Q ss_pred             CCCccc----chhhhhhccCcccccc-cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc
Q 024997            1 MPFYPL----YQEQTDYFESVDYKFE-GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~~----~~~~~~~~g~~~~~~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~   70 (259)
                      +|+|+.    |.......|.++.... .|++.|++.++++++++++++||||||.+.     .++|+++|+++|+|++|.
T Consensus       106 ~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a  185 (405)
T PRK08776        106 HDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFL  185 (405)
T ss_pred             cCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCc
Confidence            366665    3333343454443333 467889988888899999999999999987     388999999999999994


Q ss_pred             CCCC-CCCCCCCCCeEEEeccccccCC-CcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcc
Q 024997           71 WPHF-APIPAPADEELMIFTISKLTGH-AGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNN  148 (259)
Q Consensus        71 ~~~~-~~~~~~~~~~i~~~S~SK~~g~-~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  148 (259)
                      .+.. .++  ..+..+++.|.||.++. .|+..|++++.++++.+++.........+++++.++++...++         
T Consensus       186 ~~~~~~pl--~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~---------  254 (405)
T PRK08776        186 SPALQKPL--EFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLR---------  254 (405)
T ss_pred             ccccCCcc--cccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhC---------
Confidence            2221 122  22346899999999964 4688999988667888888776666666678877776654444         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc----cceeeCCCCCeeEEEecCCCchHHHHHHHHHcCe
Q 024997          149 IFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCT----YFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKI  219 (259)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi  219 (259)
                      +++.++++.+++...+.+.|++.+.+.....|+...+    .++......|-.+.+.++. +.+.+.+++++-.+
T Consensus       255 tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~-~~~~~~~f~~~l~l  328 (405)
T PRK08776        255 TLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEG-GEAAVRAFVDGLRY  328 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcC-CHHHHHHHHHhCCc
Confidence            7788899999999999999999987654444432211    1222222234455666754 34445556655444

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.85  E-value=6.8e-20  Score=160.42  Aligned_cols=211  Identities=12%  Similarity=0.061  Sum_probs=147.6

Q ss_pred             cChhhhcccCC---C-CceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc----cCCCCCCCC---C-CCCCeE
Q 024997           23 GEANLWGNASS---D-THLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY----FWPHFAPIP---A-PADEEL   85 (259)
Q Consensus        23 ~d~~~l~~~~~---~-~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y----~~~~~~~~~---~-~~~~~i   85 (259)
                      .|.+.+++.++   + ++++|++++|+||+|.+.+     ++|+++|+++|+||+|    |++....+.   + ..+.++
T Consensus       161 ~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~di  240 (402)
T TIGR01821       161 NDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDI  240 (402)
T ss_pred             CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeE
Confidence            46666766663   3 5789999999999999983     8999999999999998    233222211   2 123478


Q ss_pred             EEeccccccCCCcceEEEEEecCHHHHHHHHHhhhh--hcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 024997           86 MIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL--NTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWEN  163 (259)
Q Consensus        86 ~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (259)
                      +++||||.+|.+|   ||++++ +++++.+......  .+.+.++..+.++.+.++..     ... .+.++++.+++++
T Consensus       241 v~~t~sKa~g~~G---G~i~~~-~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~-----~~~-~~~~~~~~~~~~~  310 (402)
T TIGR01821       241 IEGTLAKAFGVVG---GYIAAS-RKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHL-----KES-QDLRRAHQENVKR  310 (402)
T ss_pred             EEEechhhhccCC---ceeecC-HHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHh-----hcC-HHHHHHHHHHHHH
Confidence            8999999999888   999988 6999988765432  24457777888888888742     112 4456667788888


Q ss_pred             HHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHcCeeeecCCcccC--CCCeEEEEee
Q 024997          164 LSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAKIIGREGKKFRA--EARFVRLSLL  239 (259)
Q Consensus       164 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~g~~f~~--~~~~~Ris~~  239 (259)
                      +.+.|++++              ++...+.++ ++.+.+...  ..++...+++++||.+++......  +..++|+++.
T Consensus       311 l~~~L~~~g--------------~~~~~~~~~-i~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~  375 (402)
T TIGR01821       311 LKNLLEALG--------------IPVIPNPSH-IVPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPT  375 (402)
T ss_pred             HHHHHHHcC--------------CCcCCCCCC-EEEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeC
Confidence            888888754              222344444 344445432  234555556677999988553322  3468999985


Q ss_pred             --cChhhHHHHHHHHHHHhhh
Q 024997          240 --KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       240 --~~~~~~~~~~~~l~~~l~~  258 (259)
                        .++++++++++.|++++++
T Consensus       376 ~~~t~edi~~~~~~l~~~~~~  396 (402)
T TIGR01821       376 PAHTDKMIDDLVEALLLVWDR  396 (402)
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
Confidence              3999999999999988753

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.85  E-value=1.8e-19  Score=155.26  Aligned_cols=232  Identities=13%  Similarity=0.054  Sum_probs=154.5

Q ss_pred             chhhhhhccCccc------ccccChhhhcccCCC-CceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc-cCCC
Q 024997            7 YQEQTDYFESVDY------KFEGEANLWGNASSD-THLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY-FWPH   73 (259)
Q Consensus         7 ~~~~~~~~g~~~~------~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y-~~~~   73 (259)
                      +...++..|.++.      .+.+|.+++++.+++ +++++++++|+||||.+++     ++|+++|+++++|++| ++..
T Consensus        89 ~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~  168 (356)
T cd06451          89 WADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGE  168 (356)
T ss_pred             HHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCc
Confidence            4556666776652      256788999999876 8999999999999999883     7899999999999987 3322


Q ss_pred             CCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHH---hhh----------------hhcCCCCHHHHHHH
Q 024997           74 FAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSA---YIS----------------LNTMGVSRECQLRA  134 (259)
Q Consensus        74 ~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~---~~~----------------~~~~~~~~~~q~~~  134 (259)
                      ...+. ..+..+++.|.+|.++.+ .++||++.+ +++++.+..   ...                .....++...+.++
T Consensus       169 ~~~~~-~~~~d~~~~s~~K~l~~p-~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~  245 (356)
T cd06451         169 PFRMD-EWGVDVAYTGSQKALGAP-PGLGPIAFS-ERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYAL  245 (356)
T ss_pred             ccccc-ccCccEEEecCchhccCC-CCcceeEEC-HHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHH
Confidence            22221 223457788999999743 358999998 688877653   000                11122334444555


Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHH
Q 024997          135 FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGI  213 (259)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l  213 (259)
                      .++++..    ....+++..++.+++.+.+.+.|+.++ +.+.          ......++.++|+.++.. +...+.+.
T Consensus       246 ~aal~~l----~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (356)
T cd06451         246 REALDLI----LEEGLENRWARHRRLAKALREGLEALG-LKLL----------AKPELRSPTVTAVLVPEGVDGDEVVRR  310 (356)
T ss_pred             HHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHcC-Ceec----------cCcccCCCceEEEECCCCCCHHHHHHH
Confidence            5555532    112345667778888888888888753 2211          000122455667766532 34445555


Q ss_pred             HHHc-CeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          214 LKAA-KIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       214 l~~~-gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      |.++ ||.+++|..+. .++++|+|++.  ++++++.+++.|+++++
T Consensus       311 L~~~~gI~~~~g~~~~-~~~~iRis~~~~~~~e~v~~~~~~l~~~~~  356 (356)
T cd06451         311 LMKRYNIEIAGGLGPT-AGKVFRIGHMGEATREDVLGVLSALEEALK  356 (356)
T ss_pred             HHHhCCEEEecccccc-cCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            5555 99999987543 34799999964  88999999999998764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.85  E-value=6.7e-20  Score=160.51  Aligned_cols=230  Identities=15%  Similarity=0.086  Sum_probs=154.2

Q ss_pred             chhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccccCCC-C
Q 024997            7 YQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYFWPH-F   74 (259)
Q Consensus         7 ~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~~~~-~   74 (259)
                      |...++..|.++.      .+.+|.+.|++.++++++++++++|+||||.+++     ++|+++|+++|+|++|.... .
T Consensus       125 ~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~  204 (403)
T TIGR01979       125 WQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMP  204 (403)
T ss_pred             HHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhccCCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccc
Confidence            3344555666542      2457888999999889999999999999999983     78999999999999983111 1


Q ss_pred             CCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh--------------------hhcC-CCCHHHHHH
Q 024997           75 APIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS--------------------LNTM-GVSRECQLR  133 (259)
Q Consensus        75 ~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~--------------------~~~~-~~~~~~q~~  133 (259)
                      ..+ ...+.++++.|++|.+|.+|  +|+++++ +++++.+.....                    .... .++.....+
T Consensus       205 ~~~-~~~~~d~~~~s~~K~~gp~G--~g~l~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a  280 (403)
T TIGR01979       205 VDV-QALDCDFYVFSGHKMYGPTG--IGVLYGK-EELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIG  280 (403)
T ss_pred             cCc-cccCCCEEEEecccccCCCC--ceEEEEc-hHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHH
Confidence            122 23356899999999998777  9999998 688776542210                    0011 233344445


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCC----CCeeEEEecCCCchHH
Q 024997          134 AFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPP----SPAYAWVKCEREEDKD  209 (259)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  209 (259)
                      +..+++...+    .-.++.+++..+.++.+.+.|+.++++.             ...|.    .+.++.+.++..+...
T Consensus       281 l~~al~~~~~----~g~~~~~~~~~~l~~~l~~~l~~~~g~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~  343 (403)
T TIGR01979       281 LGAAIDYLEA----IGLENIEAHEHELTAYALERLGEIPGLR-------------IYGPRDAEDRGGIISFNVEGVHPHD  343 (403)
T ss_pred             HHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHHhcCCCEE-------------EeCCCCccccCceEEEEeCCcCHHH
Confidence            5555543211    1134557778888888888887765422             22221    2334445565444555


Q ss_pred             HHHHHHHcCeeeecCCcccC-------CCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          210 CYGILKAAKIIGREGKKFRA-------EARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       210 ~~~ll~~~gi~~~~g~~f~~-------~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      +.+.|+++||.+++|..+..       .++++|+|++.  +.++++.+++.|+++++
T Consensus       344 ~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~  400 (403)
T TIGR01979       344 VGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRK  400 (403)
T ss_pred             HHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHH
Confidence            66788889999998864321       25799999975  88999999999988765

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.85  E-value=4.6e-20  Score=161.28  Aligned_cols=207  Identities=13%  Similarity=0.096  Sum_probs=150.5

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhHH---------HhhcCCCcEEEeeccc--cCCCC--CCC--CCCCCCeEEE
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMNK---------AVLKGPYAKSIYDHAY--FWPHF--API--PAPADEELMI   87 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~---------~la~~~~~~vi~De~y--~~~~~--~~~--~~~~~~~i~~   87 (259)
                      .|++.|++.+.+++++++++.++||+|.+++         ++|+++|+++|+||+|  |+...  ..+  .+..+.   +
T Consensus       171 ~d~~~l~~~~~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pD---i  247 (398)
T PRK03244        171 GDVDALAAAVDDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPD---V  247 (398)
T ss_pred             CCHHHHHHhhcCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCC---E
Confidence            3778888888778899899999999999883         7899999999999999  43211  111  122122   4


Q ss_pred             eccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHH
Q 024997           88 FTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKI  167 (259)
Q Consensus        88 ~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
                      .||||.++ +|+|+||++++ +++++.+.......+++.+++.|.++.+.++...   .+    ...++++++.+.+.+.
T Consensus       248 ~t~sK~l~-~G~~ig~~~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~---~~----~~~~~~~~~~~~l~~~  318 (398)
T PRK03244        248 VTLAKGLG-GGLPIGACLAF-GPAADLLTPGLHGSTFGGNPVACAAALAVLDTIA---SE----GLLENAERLGEQLRAG  318 (398)
T ss_pred             EEEchhhh-CCcccEEEEEc-HHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHH---hc----cHHHHHHHHHHHHHHH
Confidence            58899998 89999999999 6898888765555678899999999999987531   11    2356677777888888


Q ss_pred             HHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhH
Q 024997          168 ISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDF  245 (259)
Q Consensus       168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~  245 (259)
                      |+.++.   .        .+.... ..|.++|+.++......+.+.+.++||.+.+.     ..+.+|+++..  +++++
T Consensus       319 L~~~~~---~--------~~~~v~-g~g~~~~i~~~~~~~~~~~~~l~~~Gv~~~~~-----~~~~iR~~p~~~~t~~~i  381 (398)
T PRK03244        319 IEALGH---P--------LVDHVR-GRGLLLGIVLTAPVAKAVEAAAREAGFLVNAV-----APDVIRLAPPLIITDAQV  381 (398)
T ss_pred             HHhcCC---C--------ceeeEe-eccEEEEEEEeccHHHHHHHHHHHCCeEEeec-----CCCEEEEECCCcCCHHHH
Confidence            876430   0        011222 36788898885433344445555789999872     24789999753  89999


Q ss_pred             HHHHHHHHHHhhh
Q 024997          246 DLLLHRLDELISK  258 (259)
Q Consensus       246 ~~~~~~l~~~l~~  258 (259)
                      ++++++|.+++.+
T Consensus       382 ~~~~~~l~~~l~~  394 (398)
T PRK03244        382 DAFVAALPAILDA  394 (398)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

>PLN02721 threonine aldolase

Probab=99.85  E-value=1.4e-19  Score=155.69  Aligned_cols=227  Identities=13%  Similarity=0.041  Sum_probs=144.8

Q ss_pred             CCCcc-cchh--hhhhccCccc------ccccChhhhcccCC-------CCceEEEEcC-CCCCChhhH--------HHh
Q 024997            1 MPFYP-LYQE--QTDYFESVDY------KFEGEANLWGNASS-------DTHLVEFVTA-PNNPDGQMN--------KAV   55 (259)
Q Consensus         1 ~P~y~-~~~~--~~~~~g~~~~------~~~~d~~~l~~~~~-------~~~~~i~i~~-p~NPtG~~~--------~~l   55 (259)
                      +|+|. .|..  .+...|.++.      .+.+|++.|++.++       ++++++++++ ||||||.++        .++
T Consensus        87 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l  166 (353)
T PLN02721         87 DNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGEL  166 (353)
T ss_pred             CccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHH
Confidence            46653 3432  4555666542      24578899999886       5788888877 478999875        278


Q ss_pred             hcCCCcEEEeeccc-cCC-CCCCCC--C-CCCCeEEEeccccccCCCcceEEE-EEecCHHHHHHHHHhhhhhcCCCCHH
Q 024997           56 LKGPYAKSIYDHAY-FWP-HFAPIP--A-PADEELMIFTISKLTGHAGSRFGW-AVIKDEAVYQRMSAYISLNTMGVSRE  129 (259)
Q Consensus        56 a~~~~~~vi~De~y-~~~-~~~~~~--~-~~~~~i~~~S~SK~~g~~G~R~G~-i~~~~~~~~~~~~~~~~~~~~~~~~~  129 (259)
                      |+++|+++|+|++| |+. ......  . ......++.|+||.++.+   +|+ ++.+ +++++.+.........+++.+
T Consensus       167 ~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~---~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~  242 (353)
T PLN02721        167 AKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAP---VGSVIVGS-KSFIRKAKRLRKTLGGGMRQV  242 (353)
T ss_pred             HHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCc---eeeEEecC-HHHHHhHHHHHHhcCCCeehh
Confidence            99999999999998 321 111111  1 113345566899998743   576 5566 799888776655433333333


Q ss_pred             HHHHH--HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC---
Q 024997          130 CQLRA--FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER---  204 (259)
Q Consensus       130 ~q~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  204 (259)
                      .+.++  ...++        .+..+ .++..++++.+.+.|+.++++..           . ..+..+.++|++++.   
T Consensus       243 ~~~~~~~~~~l~--------~~~~~-~~~~~~~~~~l~~~L~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~  301 (353)
T PLN02721        243 GVLAAAALVALQ--------ENVPK-LEDDHKKAKLLAEGLNQIKGLRV-----------N-VAAVETNIVYFDITDGSR  301 (353)
T ss_pred             HHHHHHHHHHHH--------HHHHH-HHHHHHHHHHHHHHHHhCCCcEE-----------e-cCCccceEEEEEccCCcc
Confidence            32322  22232        23333 33345667788888887654211           1 223335568888864   


Q ss_pred             CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          205 EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       205 ~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      .+.+.+.+.|.++||.++|+     +.+++|++++.  +++++++++++|++++.
T Consensus       302 ~~~~~~~~~L~~~gi~v~~~-----~~~~lR~~~~~~~~~~~i~~~~~~l~~~~~  351 (353)
T PLN02721        302 ITAEKLCKSLEEHGVLLMPG-----NSSRIRVVTHHQISDSDVQYTLSCFQQAAL  351 (353)
T ss_pred             ccHHHHHHHHHhCCcEEecC-----CCceEEEEecCcCCHHHHHHHHHHHHHHhh
Confidence            24455566666899999996     24789999963  99999999999998764

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.84  E-value=2.1e-19  Score=156.33  Aligned_cols=234  Identities=12%  Similarity=0.133  Sum_probs=151.3

Q ss_pred             hhhhhccCccccccc-ChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCC
Q 024997            9 EQTDYFESVDYKFEG-EANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPAD   82 (259)
Q Consensus         9 ~~~~~~g~~~~~~~~-d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~   82 (259)
                      ..+...|.++..+.. |++++++.+++++++|++++|+||||.+.     .++|+++|+++|+|++|-.+.. ..+...+
T Consensus       119 ~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~-~~pl~~g  197 (390)
T PRK08133        119 KIFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPAL-QQPLKLG  197 (390)
T ss_pred             HHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCccccc-CCchhhC
Confidence            344556766654444 57889999988999999999999999987     3899999999999998821111 1111223


Q ss_pred             CeEEEeccccccCCCcceE-EEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 024997           83 EELMIFTISKLTGHAGSRF-GWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRW  161 (259)
Q Consensus        83 ~~i~~~S~SK~~g~~G~R~-G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  161 (259)
                      ..+++.|+||.++.+|.++ ||++++ +++++.+...........++..++.+.+.+         +.+..+.++..++.
T Consensus       198 ~Divv~S~sK~~~g~g~~~GG~vv~~-~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl---------~tl~~R~~~~~~~a  267 (390)
T PRK08133        198 ADVVIHSATKYLDGQGRVLGGAVVGS-KELMEEVFGFLRTAGPTLSPFNAWVFLKGL---------ETLSLRMEAHSANA  267 (390)
T ss_pred             CcEEEeecceeecCCcceEeEEEEcC-HHHHHHHHHHHHHhCCCCCHHHHHHHHccc---------chHHHHHHHHHHHH
Confidence            4688999999998899998 566666 688888877666666666666554433222         36777788889999


Q ss_pred             HHHHHHHHhcCCCccccccccccc----cceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCccc---------
Q 024997          162 ENLSKIISLSNRFSLQEIAPQYCT----YFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFR---------  228 (259)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~---------  228 (259)
                      ..+.+.|++.+.+.....+.....    .++......|..+.++++. +.+.+.+++++-.+.. .+.++|         
T Consensus       268 ~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~-~~~~~~~f~~~l~l~~-~~~slG~~~sl~~~p  345 (390)
T PRK08133        268 LALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKG-GREAAWRVIDATRLIS-ITANLGDTKTTITHP  345 (390)
T ss_pred             HHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC-CHHHHHHHHHhCCcce-EeccCCCcceeeecC
Confidence            999999999887654444431111    0111112234455666653 3444555655544421 121111         


Q ss_pred             -----------------CCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          229 -----------------AEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       229 -----------------~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                                       .+++.+|+|++-  |+.+.+++-|.+.|+
T Consensus       346 ~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al~  389 (390)
T PRK08133        346 ATTTHGRLSPEARAAAGITEGLIRVAVGL--EDVADIKADLARGLA  389 (390)
T ss_pred             CCCCcccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHHhh
Confidence                             125789999987  345556666655553

>PLN02242 methionine gamma-lyase

Probab=99.84  E-value=1.9e-19  Score=157.40  Aligned_cols=162  Identities=10%  Similarity=0.024  Sum_probs=119.4

Q ss_pred             CCCcccchhhh-----hhccCcccccc-cChhhhcccCCC-CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQT-----DYFESVDYKFE-GEANLWGNASSD-THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~-----~~~g~~~~~~~-~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~   68 (259)
                      +|.|+.+...+     +..|.++..+. .|++++++++++ ++++|++++|+||||.+.     .++|+++|++||+|++
T Consensus       122 ~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea  201 (418)
T PLN02242        122 NTLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNT  201 (418)
T ss_pred             CCcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECC
Confidence            46777776554     23455543333 368889999987 599999999999999998     3889999999999999


Q ss_pred             ccCCCCCCCCCCCCCeEEEeccccccCCCcce-EEEEEecCHHHHHHHHHhhhh--hcCCCCHHHHHHHHHHHHHHHhcC
Q 024997           69 YFWPHFAPIPAPADEELMIFTISKLTGHAGSR-FGWAVIKDEAVYQRMSAYISL--NTMGVSRECQLRAFKLLKVVLEDG  145 (259)
Q Consensus        69 y~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R-~G~i~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~  145 (259)
                      | .+-.... ...+.+++++|+||.++.+|++ .||++++ +++++.+......  ...+.+...|.+...+..      
T Consensus       202 ~-~~~~~~~-~~~g~divv~S~SK~l~g~g~~~gG~iv~~-~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~------  272 (418)
T PLN02242        202 F-APMVLSP-ARLGADVVVHSISKFISGGADIIAGAVCGP-AELVNSMMDLHHGALMLLGPTMNPKVAFELSER------  272 (418)
T ss_pred             C-CccCCCH-HHcCCcEEEEeCccccCCCCCceEEEEEcC-HHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcC------
Confidence            9 2111111 1224679999999999888988 4999988 7999988876442  234555666666655543      


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhcC
Q 024997          146 GNNIFEFGYNTMKKRWENLSKIISLSN  172 (259)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (259)
                       ...+..++++++++++.+.+.|++++
T Consensus       273 -l~tl~~r~~~~~~~a~~la~~L~~~~  298 (418)
T PLN02242        273 -LPHLSLRMKEHCRRAMEYAKRMKELG  298 (418)
T ss_pred             -CCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence             23666788899999999999999985

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.84  E-value=2.5e-19  Score=156.65  Aligned_cols=223  Identities=16%  Similarity=0.113  Sum_probs=144.5

Q ss_pred             hhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccccCCCCCC
Q 024997            9 EQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYFWPHFAP   76 (259)
Q Consensus         9 ~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~~~~~~~   76 (259)
                      ..++..|.++.       .+.+|++.|++.++++++++++++|+||||.+++     ++|+++|+++|+|++++.+.. .
T Consensus       123 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~-~  201 (397)
T TIGR01976       123 QAAERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHG-L  201 (397)
T ss_pred             HHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhcccc-C
Confidence            34455676542       2457788899999888999999999999999873     889999999999999852211 1


Q ss_pred             CC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhc---------CCCCH-HH---HHHHHHHHHHHH
Q 024997           77 IP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNT---------MGVSR-EC---QLRAFKLLKVVL  142 (259)
Q Consensus        77 ~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~---------~~~~~-~~---q~~~~~~l~~~~  142 (259)
                      +. ...+..++++|++|.+|   .|+|+++++ +++++.+........         .+.++ ..   ..++.+.+... 
T Consensus       202 ~~~~~~~~d~~~~s~~K~~g---~~~G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-  276 (397)
T TIGR01976       202 IDVQATGADFLTCSAYKFFG---PHMGILWGR-PELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGL-  276 (397)
T ss_pred             CCHHHcCCCEEEEechhhcC---CceEEEEEc-HHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHh-
Confidence            11 22345777899999985   468999999 688887764322111         11122 22   22334444321 


Q ss_pred             hcCCc----------chHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCC----CCCeeEEEecCCCchH
Q 024997          143 EDGGN----------NIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP----PSPAYAWVKCEREEDK  208 (259)
Q Consensus       143 ~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  208 (259)
                        +.+          ..+++..++..+..+++.+.|++++++.             ...+    ..+.++.+.++..+.+
T Consensus       277 --g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~  341 (397)
T TIGR01976       277 --GESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVT-------------LYGVARLAARVPTVSFTVHGLPPQ  341 (397)
T ss_pred             --CcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEE-------------EeCCCCccCCCceEEEEeCCcCHH
Confidence              110          0245556666777777778777655422             2221    1233555666544455


Q ss_pred             HHHHHHHHcCeeeecCCccc----------CCCCeEEEEeec--ChhhHHHHHHHH
Q 024997          209 DCYGILKAAKIIGREGKKFR----------AEARFVRLSLLK--SQDDFDLLLHRL  252 (259)
Q Consensus       209 ~~~~ll~~~gi~~~~g~~f~----------~~~~~~Ris~~~--~~~~~~~~~~~l  252 (259)
                      .+.+.|+++||.++.|..+.          ...+++|+|+..  +.++++.+++.|
T Consensus       342 ~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       342 RVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             HHHHHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence            56666778899999887664          134689999965  888898888754

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.84  E-value=1.7e-19  Score=156.83  Aligned_cols=219  Identities=13%  Similarity=0.073  Sum_probs=142.3

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEeccccccCCC
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHA   97 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g~~   97 (259)
                      .|++++++.+++++++|++++|+||||.+.     .++|+++|+++|+|++|-.+ ....+-..+.++++.|+||.++.+
T Consensus       134 ~d~~~l~~~i~~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~-~~~~pl~~g~Div~~S~sK~l~g~  212 (386)
T PRK06767        134 ETEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSP-YLQRPLELGCDAVVHSATKYIGGH  212 (386)
T ss_pred             CCHHHHHHhhCcCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCccc-ccCCchhcCCcEEEecCcceecCC
Confidence            467888888888899999999999999987     38999999999999998211 111111224468899999999888


Q ss_pred             cceE-EEEEecCHHHHHHHHH-hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 024997           98 GSRF-GWAVIKDEAVYQRMSA-YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFS  175 (259)
Q Consensus        98 G~R~-G~i~~~~~~~~~~~~~-~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  175 (259)
                      |.|+ ||++++ +++++++.. .........+++.++++...++         .+..+.++.+++...+.+.|++++++.
T Consensus       213 g~~~gG~v~~~-~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~---------tl~~r~~~~~~~a~~la~~L~~~p~v~  282 (386)
T PRK06767        213 GDVVAGVTICK-TRALAEKIRPMRKDIGGIMAPFDAWLLLRGLK---------TLAVRMDRHCDNAEKIVSFLKNHDAVE  282 (386)
T ss_pred             CCceeEEEEeC-hHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCC---------cHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            9886 899988 587777543 3333444556665555443333         455678889999999999999998876


Q ss_pred             cccccccccccceee-CCCCCeeEEEecCCC--chHHHHHHHHHcCeeeecCCccc----------------------CC
Q 024997          176 LQEIAPQYCTYFKKI-RPPSPAYAWVKCERE--EDKDCYGILKAAKIIGREGKKFR----------------------AE  230 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~g~~f~----------------------~~  230 (259)
                      ....|.+  ..++.. ...+| .+.+.++..  +...+.+.|+..++.+.-|....                      .+
T Consensus       283 ~v~~p~~--~~~~~~~~~~gg-~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~  359 (386)
T PRK06767        283 GVWYPEG--ELASRQMKRGGG-VISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIY  359 (386)
T ss_pred             EEECCCc--HHHHHhCCCCCc-eEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCccccCCCccccccCCHHHHHhcCCC
Confidence            5444421  111111 22334 444455432  23445555555666655552111                      12


Q ss_pred             CCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          231 ARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       231 ~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      ++.+|+|++-  |+.+++++-|.+.|+
T Consensus       360 ~~l~R~svGl--E~~~dl~~dl~~al~  384 (386)
T PRK06767        360 DNLIRLSVGL--ESWEDIVSDLEQALK  384 (386)
T ss_pred             CCeEEEEecc--CCHHHHHHHHHHHHh
Confidence            5689999987  334555555555543

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.84  E-value=4.2e-19  Score=153.96  Aligned_cols=186  Identities=12%  Similarity=0.104  Sum_probs=133.2

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEeccccccC-C
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTG-H   96 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g-~   96 (259)
                      .|++++++.+++++++|++++|+||||.++     .++|+++|+++|+|++|..+.. ..+-.....++++|+||.++ .
T Consensus       125 ~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~-~~pl~~gaDivv~S~tK~l~G~  203 (386)
T PRK08045        125 GDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPAL-QNPLALGADLVLHSCTKYLNGH  203 (386)
T ss_pred             CCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcccc-CCchhhCCCEEEeecceeccCC
Confidence            577889988888999999999999999998     3889999999999999942211 11112233689999999984 6


Q ss_pred             CcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 024997           97 AGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSL  176 (259)
Q Consensus        97 ~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  176 (259)
                      +|++.|++++.++++++.+.......+.+.+++.++.+.+.++         .+..++++..++...+.+.|+..+.+..
T Consensus       204 ~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~---------tl~~R~~~~~~na~~la~~L~~~p~v~~  274 (386)
T PRK08045        204 SDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR---------TLVPRMELAQRNAQAIVKYLQTQPLVKK  274 (386)
T ss_pred             CCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhc---------cHHHHHHHHHHHHHHHHHHHHcCCCEeE
Confidence            7899999988557898888877777788899999988877776         4777899999999999999999987654


Q ss_pred             ccccccccc----cceeeCCCCCeeEEEecCCCchHHHHHHHHHcCe
Q 024997          177 QEIAPQYCT----YFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKI  219 (259)
Q Consensus       177 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi  219 (259)
                      ...|....+    .++......|-.+.+.++. +.+.+.++++.-.+
T Consensus       275 V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~-~~~~~~~f~~~l~~  320 (386)
T PRK08045        275 LYHPSLPENQGHEIAARQQKGFGAMLSFELDG-DEQTLRRFLGGLSL  320 (386)
T ss_pred             EECCCCCCCcCHHHHHHhCCCCCceEEEEecC-cHHHHHHHHHhccc
Confidence            433332111    0111111223345566653 33444455544443

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.84  E-value=1.6e-19  Score=156.82  Aligned_cols=204  Identities=14%  Similarity=0.125  Sum_probs=147.5

Q ss_pred             ChhhhcccCCCCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeEEEe
Q 024997           24 EANLWGNASSDTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEELMIF   88 (259)
Q Consensus        24 d~~~l~~~~~~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i~~~   88 (259)
                      |++.|++.+.++++++++..+++++|.+.         .++|+++|+++|+||+|  |+.....+.    +..+ .  +.
T Consensus       156 d~~~l~~~~~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~-d--i~  232 (377)
T PRK02936        156 DIKALKEVMNEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDP-D--IV  232 (377)
T ss_pred             CHHHHHHhccCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCC-c--EE
Confidence            67889988888889988888888888764         28899999999999999  322111111    1111 1  44


Q ss_pred             ccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 024997           89 TISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKII  168 (259)
Q Consensus        89 S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (259)
                      |+||.++ +|+|+||++++ +++.+.+.......+.+.+++.|.++.++++...   .+    +.+++++++.+.+.+.|
T Consensus       233 t~sK~l~-~G~~ig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~---~~----~~~~~~~~~~~~l~~~L  303 (377)
T PRK02936        233 TVAKGLG-NGIPVGAMIGK-KELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIK---QP----SFLEEVQEKGEYFLQKL  303 (377)
T ss_pred             EEccccc-CCCccEEEEEc-HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHH---hc----cHHHHHHHHHHHHHHHH
Confidence            8999999 99999999999 7999988765555567889999999999998531   12    23566677777777777


Q ss_pred             Hhc-CCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEe--ecChhhH
Q 024997          169 SLS-NRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSL--LKSQDDF  245 (259)
Q Consensus       169 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~--~~~~~~~  245 (259)
                      ++. .++.          .+....+ .|+++|+++... .+.+...+.++||.+.|+     +.+++||++  ..+++++
T Consensus       304 ~~~~~~~~----------~~~~v~~-~g~~~~i~~~~~-~~~~~~~l~~~gv~v~~~-----g~~~lRi~p~~~~~~~~i  366 (377)
T PRK02936        304 QEELEHLE----------CVKNIRG-KGLMIGIECTEE-VAPVIEQLREEGLLVLSA-----GPNVIRLLPPLVVTKEEL  366 (377)
T ss_pred             HHHHhhCC----------cEEeEee-cceEEEEEecch-HHHHHHHHHHCCeEEecC-----CCCEEEEECCcccCHHHH
Confidence            652 1110          0222223 568899998654 455666777899999873     347999996  4599999


Q ss_pred             HHHHHHHHHHh
Q 024997          246 DLLLHRLDELI  256 (259)
Q Consensus       246 ~~~~~~l~~~l  256 (259)
                      ++++++|.+++
T Consensus       367 ~~~i~~l~~~~  377 (377)
T PRK02936        367 DQAVYLLKKVL  377 (377)
T ss_pred             HHHHHHHHHhC
Confidence            99999998764

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.83  E-value=4.1e-19  Score=154.95  Aligned_cols=168  Identities=11%  Similarity=0.128  Sum_probs=119.1

Q ss_pred             CCcccchhh----hhhccCcccccc-cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCC--CcEEEeeccc
Q 024997            2 PFYPLYQEQ----TDYFESVDYKFE-GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGP--YAKSIYDHAY   69 (259)
Q Consensus         2 P~y~~~~~~----~~~~g~~~~~~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~--~~~vi~De~y   69 (259)
                      |.|+.+...    ++..|.++..+. .|++++++.+++++++|++++|+||||.+.     .++|+++  |+++|+|++|
T Consensus       111 ~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~  190 (400)
T PRK06234        111 TLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTF  190 (400)
T ss_pred             CccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCC
Confidence            556554433    344566654333 367889998988999999999999999997     3888886  9999999998


Q ss_pred             cCCCCCCCCCCCCCeEEEeccccccCCCcceE-EEEEecCHHHHHHHHHh--hhhhcCCCCHHHHHHHHHHHHHHHhcCC
Q 024997           70 FWPHFAPIPAPADEELMIFTISKLTGHAGSRF-GWAVIKDEAVYQRMSAY--ISLNTMGVSRECQLRAFKLLKVVLEDGG  146 (259)
Q Consensus        70 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~-G~i~~~~~~~~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~  146 (259)
                      -.+.. ..+...+.+++++|+||.++.+|+|+ ||++++ +++++.++..  ....+.+.++...+.+...++       
T Consensus       191 ~~~~~-~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~-~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~-------  261 (400)
T PRK06234        191 CTPYI-QRPLQLGADVVVHSATKYLNGHGDVIAGFVVGK-EEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMK-------  261 (400)
T ss_pred             Cchhc-CCchhhCCcEEEeeccccccCCCCceeEEEEec-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccC-------
Confidence            21111 11112246799999999998889876 999998 6888887653  223345666665554444443       


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 024997          147 NNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIA  180 (259)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  180 (259)
                        .+..++++.+++...+.+.|++.+.+.....+
T Consensus       262 --tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p  293 (400)
T PRK06234        262 --TLQIRMEKHCKNAMKVAKFLESHPAVEKVYYP  293 (400)
T ss_pred             --cHHHHHHHHHHHHHHHHHHHHcCCCeeEEECC
Confidence              45667888889999999999988866544444

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.83  E-value=1.3e-19  Score=157.70  Aligned_cols=216  Identities=14%  Similarity=0.146  Sum_probs=149.6

Q ss_pred             cccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccccCCCCCCCC-CCCCCeEEEecccccc
Q 024997           21 FEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYFWPHFAPIP-APADEELMIFTISKLT   94 (259)
Q Consensus        21 ~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~~~~~~~~~-~~~~~~i~~~S~SK~~   94 (259)
                      +.+|++.|++.++++++++++++||||||.+++     ++|+++|+++++|+++..+. .++. ...+..+++.|++|.+
T Consensus       126 g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~-~~~~~~~~~~D~~~~s~~K~~  204 (382)
T TIGR03403       126 GTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGK-IPVDVQKAGVDFLSFSAHKFH  204 (382)
T ss_pred             CCCCHHHHHHhcccCCeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCC-CccCccccCCCEEEEcchhhC
Confidence            356788899999888999999999999999983     88999999999999973111 1122 2334578999999998


Q ss_pred             CCCcceEEEEEecCHHHH--HHHHH---hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHH
Q 024997           95 GHAGSRFGWAVIKDEAVY--QRMSA---YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIIS  169 (259)
Q Consensus        95 g~~G~R~G~i~~~~~~~~--~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  169 (259)
                      |.+|  +|++++.+ +..  ..+..   ........++.+.+.++..+++.     ..+.++...+++++.++++.+.|+
T Consensus       205 gp~G--~g~l~vr~-~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~-----~~~~~~~~~~~~~~l~~~l~~~L~  276 (382)
T TIGR03403       205 GPKG--VGGLYIRK-GVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRL-----ANEYLDFEKSHVRRLRDRLEDALL  276 (382)
T ss_pred             CCCc--eEEEEECC-CCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHHh
Confidence            8888  68887663 321  11100   00011234566667667777763     223466777889999999999998


Q ss_pred             hcCCCccccccccccccceeeCC---CCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccC-----------------
Q 024997          170 LSNRFSLQEIAPQYCTYFKKIRP---PSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRA-----------------  229 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~-----------------  229 (259)
                      +++++.             ...+   ..+.++.+.++..+.+.+...|.++||.++.|..+..                 
T Consensus       277 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~  343 (382)
T TIGR03403       277 ELPDVF-------------VVGDREHRVPNTILISIKGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKE  343 (382)
T ss_pred             cCCCEE-------------EECCCCCCcCCEEEEEeCCCCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChH
Confidence            766532             2222   2234555666655555555567789999998876531                 


Q ss_pred             -CCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          230 -EARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       230 -~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                       ..+.+|+|+..  +.++++.+++.|++++++
T Consensus       344 ~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~  375 (382)
T TIGR03403       344 LAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQR  375 (382)
T ss_pred             HhCeeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence             12579999976  889999999999887753

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.83  E-value=4.2e-19  Score=153.81  Aligned_cols=221  Identities=13%  Similarity=0.113  Sum_probs=148.1

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccccCCC-CCCCCCCCCCeEEEeccccccC-
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYFWPH-FAPIPAPADEELMIFTISKLTG-   95 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~~~~-~~~~~~~~~~~i~~~S~SK~~g-   95 (259)
                      .|++.+++.+++++++|++++||||||.+++     ++|+++|+++|+|++|..+. ..++  ....+++++|+||.++ 
T Consensus       124 ~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl--~~gaDivv~S~sK~l~G  201 (382)
T TIGR02080       124 GDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPL--ALGADLVLHSCTKYLNG  201 (382)
T ss_pred             CCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCch--hhCCCEEEeecceeccC
Confidence            4678899999888999999999999999983     88999999999999993111 1111  1123689999999985 


Q ss_pred             CCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 024997           96 HAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFS  175 (259)
Q Consensus        96 ~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  175 (259)
                      .+|++.|++++.++++++.+.......+.+.+++..+.+.+.++         .+..++++..++...+.+.|++.+.+.
T Consensus       202 ~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~---------tl~~R~~~~~~na~~~a~~L~~~p~v~  272 (382)
T TIGR02080       202 HSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLR---------TLVARMRLQQRNAQAIVEYLQTQPLVK  272 (382)
T ss_pred             CCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccc---------hHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            68999999988657899999888777778888887776644443         566668889999999999999988765


Q ss_pred             cccccccccc----cceeeCCCCCeeEEEecCCCchHHHHHHHHHcCe---eeecCCc----------------------
Q 024997          176 LQEIAPQYCT----YFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKI---IGREGKK----------------------  226 (259)
Q Consensus       176 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi---~~~~g~~----------------------  226 (259)
                      ....|.....    .++......|-.+.++++. +.+.+.++++.-.+   .+.-|..                      
T Consensus       273 ~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~-~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~  351 (382)
T TIGR02080       273 KIYYPGLPDHPGHEIAARQQKGFGAMLSFELKG-GEQTVRRFLGGLSLFTLAESLGGVESLIAHPATMTHAAMGPEARAE  351 (382)
T ss_pred             EEECCCCCCCccHHHHHhhCCCCCceEEEEecC-cHHHHHHHHHcCCcceEeccCCCCcceeECCCccCcccCCHHHHHh
Confidence            4444432111    1111112234455666753 23444445444333   2222210                      


Q ss_pred             ccCCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          227 FRAEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       227 f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      .+..++.+|||++-  |+.+++++-|.+.|+
T Consensus       352 ~gi~~~liRlsvGl--E~~~dl~~dl~~al~  380 (382)
T TIGR02080       352 AGISDTLLRLSVGL--EDADDLIADLEQGLR  380 (382)
T ss_pred             cCCCcCeEEEEecc--CCHHHHHHHHHHHHh
Confidence            11125689999987  344455555555554

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK07505 hypothetical protein; Provisional

Probab=99.83  E-value=4.7e-19  Score=155.08  Aligned_cols=211  Identities=9%  Similarity=0.035  Sum_probs=137.8

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc----cCCCCCC-----CCC-CCCCeEEE
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY----FWPHFAP-----IPA-PADEELMI   87 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y----~~~~~~~-----~~~-~~~~~i~~   87 (259)
                      .|++.|++.+.++++++++++|+||||.+++     ++|+++|+++|+||+|    |++....     +.. ..++++++
T Consensus       167 ~d~~~l~~~~~~~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~  246 (402)
T PRK07505        167 NDLDALEDICKTNKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIA  246 (402)
T ss_pred             CCHHHHHHHHhcCCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEE
Confidence            5778888888767788899999999999873     8999999999999998    2222111     112 46779999


Q ss_pred             eccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcC--CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 024997           88 FTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTM--GVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLS  165 (259)
Q Consensus        88 ~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (259)
                      +|+||.+|.+|   ||++++++++++.+.......++  +++++...++.+.++..    .++.+.+..+.++++...+.
T Consensus       247 ~s~sK~~~~~G---g~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~----~~~~~~~~~~~l~~~~~~~~  319 (402)
T PRK07505        247 ASLGKAFGASG---GVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIH----LSEELDQLQQKLQNNIALFD  319 (402)
T ss_pred             EechhhhhccC---eEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHH----hccCcHHHHHHHHHHHHHHH
Confidence            99999999777   88876447898888776554433  34456666666666532    22344444555555555443


Q ss_pred             HHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccC--CCCeEEEEeec--
Q 024997          166 KIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRA--EARFVRLSLLK--  240 (259)
Q Consensus       166 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~--~~~~~Ris~~~--  240 (259)
                      ..+...                  ....+.+..++.+... ....+.+.|.++||.++++..+..  +.+++|+++..  
T Consensus       320 ~~~~~~------------------~~g~~~~i~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~  381 (402)
T PRK07505        320 SLIPTE------------------QSGSFLPIRLIYIGDEDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASH  381 (402)
T ss_pred             HHHHhc------------------CCCCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCccC
Confidence            332110                  0111111223333321 233344445578999998743322  24689999973  


Q ss_pred             ChhhHHHHHHHHHHHhhh
Q 024997          241 SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       241 ~~~~~~~~~~~l~~~l~~  258 (259)
                      +++++++++++|++++++
T Consensus       382 t~eei~~~~~~l~~~l~~  399 (402)
T PRK07505        382 TNDEIKRLCSLLKEILDE  399 (402)
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            999999999999998864

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.83  E-value=1.1e-19  Score=158.62  Aligned_cols=237  Identities=14%  Similarity=0.140  Sum_probs=163.2

Q ss_pred             CCCcccchhhhhhccCccc--------------ccc--cChhhhcccCCCC----ceEEEEcCCCCCC-hhhH-------
Q 024997            1 MPFYPLYQEQTDYFESVDY--------------KFE--GEANLWGNASSDT----HLVEFVTAPNNPD-GQMN-------   52 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------------~~~--~d~~~l~~~~~~~----~~~i~i~~p~NPt-G~~~-------   52 (259)
                      +|+|+.|.......|..+.              +|.  +|++.|++.++++    +++|++++||||+ |..+       
T Consensus        98 ~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~  177 (431)
T cd00617          98 NMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLRE  177 (431)
T ss_pred             CCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHH
Confidence            5889999988888887651              244  8999999999654    7889999999999 7775       


Q ss_pred             -HHhhcCCCcEEEeecccc-CCC-C-----CCCC--CCCCCeEEEeccccccCCCcce------EEEEEecCHHHHHHHH
Q 024997           53 -KAVLKGPYAKSIYDHAYF-WPH-F-----APIP--APADEELMIFTISKLTGHAGSR------FGWAVIKDEAVYQRMS  116 (259)
Q Consensus        53 -~~la~~~~~~vi~De~y~-~~~-~-----~~~~--~~~~~~i~~~S~SK~~g~~G~R------~G~i~~~~~~~~~~~~  116 (259)
                       .++|+++|++||+|++.+ +.. +     ....  ...+.++.++|+||.+.++|+|      .||++++++++.++++
T Consensus       178 i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~  257 (431)
T cd00617         178 VRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIGGFLALRDDELYEEAR  257 (431)
T ss_pred             HHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccceEEEeCcHHHHHHHH
Confidence             389999999999999852 111 0     0111  1123345678899999888888      5699998767999887


Q ss_pred             Hhhh----hhcCC-CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeC
Q 024997          117 AYIS----LNTMG-VSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIR  191 (259)
Q Consensus       117 ~~~~----~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  191 (259)
                      ....    ..+.+ .+.-...+++..|+.     ..+ .+. .+...++++.+.+.|++.+              +.+..
T Consensus       258 ~~~~~~~~~~~~gG~~~r~~~A~A~gL~e-----~~~-~~~-l~~~~~~r~~l~~~L~~~G--------------~~v~~  316 (431)
T cd00617         258 QRVVLYEGFVTYGGMAGRDMEALAQGLRE-----AVE-EDY-LRHRVEQVRYLGDRLDEAG--------------VPIVE  316 (431)
T ss_pred             HhccccCCccccccccHHHHHHHHHHHHh-----ccc-HHH-HHHHHHHHHHHHHHHHHCC--------------CCccC
Confidence            5431    11122 233333333335552     111 222 3333345588888888765              66678


Q ss_pred             CCCCeeEEEecCCC----------chHHHHHHHHHcCeeeec-CCc-cc--C--------CCCeEEEEeec---ChhhHH
Q 024997          192 PPSPAYAWVKCERE----------EDKDCYGILKAAKIIGRE-GKK-FR--A--------EARFVRLSLLK---SQDDFD  246 (259)
Q Consensus       192 ~~~~~~~~~~~~~~----------~~~~~~~ll~~~gi~~~~-g~~-f~--~--------~~~~~Ris~~~---~~~~~~  246 (259)
                      |.+|+++|++.+..          +.+++..++++.||.+.- |+. ++  +        +...+||++-+   +.++++
T Consensus       317 P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~  396 (431)
T cd00617         317 PAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMD  396 (431)
T ss_pred             CCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHH
Confidence            99999999998741          457788999999998654 441 11  1        24679999954   889999


Q ss_pred             HHHHHHHHHhhh
Q 024997          247 LLLHRLDELISK  258 (259)
Q Consensus       247 ~~~~~l~~~l~~  258 (259)
                      ...+.+.+++++
T Consensus       397 ~~~~~~~~~~~~  408 (431)
T cd00617         397 YVAAAVIALYER  408 (431)
T ss_pred             HHHHHHHHHHhh
Confidence            999999888763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.83  E-value=3e-19  Score=157.44  Aligned_cols=237  Identities=14%  Similarity=0.086  Sum_probs=155.7

Q ss_pred             cchhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccccCCC-
Q 024997            6 LYQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYFWPH-   73 (259)
Q Consensus         6 ~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~~~~-   73 (259)
                      .|...++..|.++.      ...+|++.|++.++++++++++++|+||||.+++     ++|+++|+++++|++|..+. 
T Consensus       138 ~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~  217 (424)
T PLN02855        138 PWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHM  217 (424)
T ss_pred             HHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhccCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCc
Confidence            35555566676642      2346788899999889999999999999999983     88999999999999994221 


Q ss_pred             CCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhh--------------------hhhcCCCCHHHHH-
Q 024997           74 FAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI--------------------SLNTMGVSRECQL-  132 (259)
Q Consensus        74 ~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~q~-  132 (259)
                      ...+ ...+.+++++|++|.+|.+|  +||++++ +++++.+....                    .....+.+.+.+. 
T Consensus       218 ~~~~-~~~~~d~~~~s~~K~~gp~G--~G~l~~~-~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~  293 (424)
T PLN02855        218 PVDV-QTLGADFLVASSHKMCGPTG--IGFLWGK-SDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAI  293 (424)
T ss_pred             CCCc-hhcCCCEEEeecccccCCCc--cEEEEEc-hhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHH
Confidence            1122 23345788999999888777  8999999 58877664321                    0012233343333 


Q ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHH
Q 024997          133 RAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYG  212 (259)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (259)
                      ++..+++..    .+.-+++..++..+..+.+.+.|++++++.+..  +.     .......+.++.+.++..+.+.+.+
T Consensus       294 ~l~~al~~~----~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~--~~-----~~~~~~r~~~v~~~~~~~~~~~v~~  362 (424)
T PLN02855        294 GLGAAIDYL----SEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYG--PK-----PSEGVGRAALCAFNVEGIHPTDLST  362 (424)
T ss_pred             HHHHHHHHH----HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeC--CC-----cccccCcccEEEEEECCcCHHHHHH
Confidence            333444422    111345667778888888888888765432210  00     0000112345556666544555666


Q ss_pred             HHHHc-CeeeecCCcccC-------CCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          213 ILKAA-KIIGREGKKFRA-------EARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       213 ll~~~-gi~~~~g~~f~~-------~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      .|.++ ||.++.|..+..       -.+++|+|+..  +.++++.+++.|+++++
T Consensus       363 ~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~  417 (424)
T PLN02855        363 FLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIA  417 (424)
T ss_pred             HhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHH
Confidence            66555 999998875531       14689999975  88999999999998875

>PRK07179 hypothetical protein; Provisional

Probab=99.83  E-value=6.3e-19  Score=154.56  Aligned_cols=220  Identities=11%  Similarity=0.061  Sum_probs=146.3

Q ss_pred             hhhhccCccccc-ccChhhhcccCCC-CceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc-c---CCCCCCCC
Q 024997           10 QTDYFESVDYKF-EGEANLWGNASSD-THLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY-F---WPHFAPIP   78 (259)
Q Consensus        10 ~~~~~g~~~~~~-~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y-~---~~~~~~~~   78 (259)
                      .++..|.+...+ ..|++.|++.+++ ++++|++++|+||||.+++     ++|+++|+++|+||+| +   +.....+.
T Consensus       154 ~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~  233 (407)
T PRK07179        154 GVRAAGAQAHPFRHNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLV  233 (407)
T ss_pred             HHHHCCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchH
Confidence            334455555444 3588889988865 5788899999999999984     8999999999999999 3   22221111


Q ss_pred             ---CCC-CCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhh-cCCCCHHHHH-HHHHHHHHHHhcCCcchHHH
Q 024997           79 ---APA-DEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN-TMGVSRECQL-RAFKLLKVVLEDGGNNIFEF  152 (259)
Q Consensus        79 ---~~~-~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~-~~~~~~~~q~-~~~~~l~~~~~~~~~~~~~~  152 (259)
                         +.. ..++++.|+||.+|.   |+||++++ +++++.+....... ..+...+.+. ++.+.++..      ....+
T Consensus       234 ~~~~~~~~vdi~~~S~sK~~g~---~~G~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~------~~~~~  303 (407)
T PRK07179        234 AELGLTSRVHFITASLAKAFAG---RAGIITCP-RELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVI------ESADD  303 (407)
T ss_pred             HhcCCCCCCCEEEeechHhhhc---cCeEEEeC-HHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHH------hcCHH
Confidence               222 236889999999962   68999998 68888776543321 1222223333 333445432      12245


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCccc-C-
Q 024997          153 GYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFR-A-  229 (259)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~-~-  229 (259)
                      .+++++++++.+.+.|++++              +... . .+.++++.+... +.+.+.+.|.++||.+..   |. + 
T Consensus       304 ~~~~l~~~~~~l~~~L~~~g--------------~~v~-~-~~~i~~l~~~~~~~~~~~~~~L~~~GI~~~~---~~~p~  364 (407)
T PRK07179        304 RRARLHANARFLREGLSELG--------------YNIR-S-ESQIIALETGSERNTEVLRDALEERNVFGAV---FCAPA  364 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHcC--------------CCCC-C-CCCEEEEEeCCHHHHHHHHHHHHHCCceEee---ecCCC
Confidence            67889999999999998763              2111 2 234566665432 345566677788997432   22 1 


Q ss_pred             ---CCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          230 ---EARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       230 ---~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                         +++.+||+++.  ++++++++++.|++++++
T Consensus       365 ~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~  398 (407)
T PRK07179        365 TPKNRNLIRLSLNADLTASDLDRVLEVCREARDE  398 (407)
T ss_pred             CCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence               25799999975  999999999999988764

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.83  E-value=1.7e-18  Score=149.42  Aligned_cols=240  Identities=13%  Similarity=0.067  Sum_probs=155.1

Q ss_pred             CCCcccchhhhh----hccCcccccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccC
Q 024997            1 MPFYPLYQEQTD----YFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFW   71 (259)
Q Consensus         1 ~P~y~~~~~~~~----~~g~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~   71 (259)
                      +|+|..+...+.    ..|.++..+..+.+ .+ .+.++++++++++|+||||.+.     .++|+++|+++|+|++|..
T Consensus        96 ~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~-~~-~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~  173 (366)
T PRK07582         96 ADGYYQVRALAREYLAPLGVTVREAPTAGM-AE-AALAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTAT  173 (366)
T ss_pred             CCCcHhHHHHHHHHHhcCeEEEEEECCCCh-HH-HhccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCC
Confidence            477877766543    24665544443322 11 3346789999999999999776     3889999999999999831


Q ss_pred             CCCCCCCCCCCCeEEEecccccc-CCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchH
Q 024997           72 PHFAPIPAPADEELMIFTISKLT-GHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIF  150 (259)
Q Consensus        72 ~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~  150 (259)
                      + ....+-.....++++|+||.+ |.+|+|+||+++.++++++.+..........++++..+.+...++         .+
T Consensus       174 ~-~~~~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~---------tl  243 (366)
T PRK07582        174 P-LGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLG---------TL  243 (366)
T ss_pred             c-cccCchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccc---------cH
Confidence            1 111111123468899999998 568899999998657899989888777777778887776655555         45


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccccccccc-ccc---ceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCc
Q 024997          151 EFGYNTMKKRWENLSKIISLSNRFSLQEIAPQY-CTY---FKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKK  226 (259)
Q Consensus       151 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~  226 (259)
                      ..+.++.+++...+.+.|++.+.+.....|... ...   ++......|-.+.+.++  +.+.+.+++++.++... +.+
T Consensus       244 ~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~--~~~~~~~~~~~l~~~~~-~~s  320 (366)
T PRK07582        244 GLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA--DAAAAERFVAASRLVVA-ATS  320 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC--CHHHHHHHHHhCCccee-ccc
Confidence            667788999999999999999876544433311 000   11111112334455565  46667788887777543 222


Q ss_pred             cc---------------CCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          227 FR---------------AEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       227 f~---------------~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      ++               .+++.+|+|++-  |+.++.++.|.+.|+
T Consensus       321 ~G~~~sl~~~~~~~~~~~~~~liR~svGl--E~~~dli~dl~~al~  364 (366)
T PRK07582        321 FGGVHTSADRRARWGDAVPEGFVRLSCGI--EDTDDLVADLERALD  364 (366)
T ss_pred             CCCccchhhhHHHcCCCCCCCeEEEEecc--CCHHHHHHHHHHHHh
Confidence            22               124689999987  233444444444443

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.83  E-value=4.6e-19  Score=154.48  Aligned_cols=206  Identities=13%  Similarity=0.154  Sum_probs=134.3

Q ss_pred             CCcccchhhhh----hccCccccc-ccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccC
Q 024997            2 PFYPLYQEQTD----YFESVDYKF-EGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFW   71 (259)
Q Consensus         2 P~y~~~~~~~~----~~g~~~~~~-~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~   71 (259)
                      |.|+.+...++    ..|.++..+ ..|++.+++.+++++++|++++|+||||.+.     .++|+++|+++|+|++|-.
T Consensus       112 ~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~  191 (398)
T PRK07504        112 ALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFAT  191 (398)
T ss_pred             CchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccc
Confidence            55665544332    335444222 4778899999989999999999999999998     3889999999999999821


Q ss_pred             CCCCCCCCCCCCeEEEeccccccCCCcceEE-EEEecCHHHHH-HHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcch
Q 024997           72 PHFAPIPAPADEELMIFTISKLTGHAGSRFG-WAVIKDEAVYQ-RMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNI  149 (259)
Q Consensus        72 ~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G-~i~~~~~~~~~-~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  149 (259)
                      +.. ..+...+.++++.|+||.++.+|+|+| +++.+ ++.++ .++.........++++..+.+.+.++         .
T Consensus       192 ~~~-~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~-~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~---------t  260 (398)
T PRK07504        192 PLF-QKPLELGAHIVVYSATKHIDGQGRCLGGVVLSD-KAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLE---------T  260 (398)
T ss_pred             ccc-CCchhhCCCEEEeeccccccCCccceEEEEEeC-cHHHHHHHHHHHHHhCCCCCHHHHHHHHhccc---------h
Confidence            111 111122468899999999988999996 56666 46554 45555555556677766665555444         5


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc----ceeeCCCCCeeEEEecCCCchHHHHHHHHHcCe
Q 024997          150 FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTY----FKKIRPPSPAYAWVKCEREEDKDCYGILKAAKI  219 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi  219 (259)
                      +..+.++..++...+.+.|++.+.+.....|......    ++......|..+.++++. +.+...++++.-.+
T Consensus       261 l~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~-~~~~~~~~~~~l~~  333 (398)
T PRK07504        261 LPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKG-GKEAAFRFLNALKI  333 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCC-CHHHHHHHHHhCCc
Confidence            6667888889999999999998876544444321111    111112234455666754 34445555554444

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.83  E-value=6.5e-19  Score=153.38  Aligned_cols=205  Identities=11%  Similarity=0.058  Sum_probs=137.8

Q ss_pred             CCcccchhh----hhhccCccccc-ccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccC
Q 024997            2 PFYPLYQEQ----TDYFESVDYKF-EGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFW   71 (259)
Q Consensus         2 P~y~~~~~~----~~~~g~~~~~~-~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~   71 (259)
                      |+|+.....    +...|.++..+ ..|++.+++.+++++++|++++|+||||.++     .++|+++|+++|+|++|-.
T Consensus       111 ~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~  190 (398)
T PRK08249        111 DTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFAT  190 (398)
T ss_pred             CchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCc
Confidence            566654333    33456554322 3578889999988999999999999999998     3889999999999999821


Q ss_pred             CC-CCCCCCCCCCeEEEeccccccCCCcceE-EEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcch
Q 024997           72 PH-FAPIPAPADEELMIFTISKLTGHAGSRF-GWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNI  149 (259)
Q Consensus        72 ~~-~~~~~~~~~~~i~~~S~SK~~g~~G~R~-G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  149 (259)
                      +. ..++  .....++++|+||.++.+|.++ |+++++ +++++.++........+.+++.++.+.+.++         .
T Consensus       191 ~~~~~~l--~~~~Divv~S~sK~l~g~~~~~gG~vv~~-~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~---------t  258 (398)
T PRK08249        191 PINQNPL--ALGADLVIHSATKFLSGHADALGGVVCGS-KELMEQVYHYREINGATMDPMSAYLILRGMK---------T  258 (398)
T ss_pred             cccCCch--hhCCCEEeccCceecCCCCCceEEEEECC-HHHHHHHHHHHHhcCCCCCHHHHHHHHhCcc---------h
Confidence            11 1111  1234588899999998777776 666666 7999999888776777788887776655554         4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc----cceeeCCCCCeeEEEecCCCchHHHHHHHHHcCe
Q 024997          150 FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCT----YFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKI  219 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi  219 (259)
                      +..+.++..++...+.+.|++.+.+.....|.....    .++......|-.+.+.++. +.+.+.++++.-.+
T Consensus       259 L~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~-~~~~~~~f~~~l~l  331 (398)
T PRK08249        259 LKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKG-GMDTVKRLLPKLRY  331 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcC-CHHHHHHHHHhCCc
Confidence            566778889999999999999887654444432111    0111111223344555543 34445556554444

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.83  E-value=8.6e-19  Score=153.64  Aligned_cols=210  Identities=14%  Similarity=0.093  Sum_probs=145.4

Q ss_pred             cChhhhcccCC----CCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc----cCCCCCCC---CCC-CCCeE
Q 024997           23 GEANLWGNASS----DTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY----FWPHFAPI---PAP-ADEEL   85 (259)
Q Consensus        23 ~d~~~l~~~~~----~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y----~~~~~~~~---~~~-~~~~i   85 (259)
                      .|++.+++.+.    ++++++++++++||+|.+.+     ++|+++|+++|+||+|    |++....+   .+. .+.++
T Consensus       161 ~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i  240 (406)
T PRK13393        161 NDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTI  240 (406)
T ss_pred             CCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeE
Confidence            46666766552    36788899999999999983     8999999999999998    23332221   122 22468


Q ss_pred             EEeccccccCCCcceEEEEEecCHHHHHHHHHhhhh--hcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 024997           86 MIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL--NTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWEN  163 (259)
Q Consensus        86 ~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (259)
                      +++||||.+|.+|   ||++++ +++++.+......  .+.+.++..+.++.+.++..     +.. ...+++++++.++
T Consensus       241 ~~~tlsKa~g~~G---G~~~~~-~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~-----~~~-~~~~~~~~~~~~~  310 (406)
T PRK13393        241 IEGTLAKAFGVMG---GYITGS-AALCDFIRSFASGFIFTTSLPPAVAAGALASVRHL-----KAS-SAERERHQDRVAR  310 (406)
T ss_pred             EEEeCchhhcccC---ceeeCC-HHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHH-----hhC-HHHHHHHHHHHHH
Confidence            8899999999888   999988 7999988776543  24556777788888888742     112 1234667888888


Q ss_pred             HHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHcCeeeecCCcccC--CCCeEEEEee
Q 024997          164 LSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAKIIGREGKKFRA--EARFVRLSLL  239 (259)
Q Consensus       164 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~g~~f~~--~~~~~Ris~~  239 (259)
                      +.+.|++++              +...++.+.++ .+.+...  ..++...+++++||.++++.....  +.+.+|+++.
T Consensus       311 l~~~L~~~g--------------~~~~~~~~~i~-~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~  375 (406)
T PRK13393        311 LRARLDKAG--------------IPHLPNPSHIV-PVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPS  375 (406)
T ss_pred             HHHHHHHcC--------------CCcCCCCCCeE-EEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEEC
Confidence            999888653              22234444443 3334321  234455556557999998653332  3478999985


Q ss_pred             --cChhhHHHHHHHHHHHhh
Q 024997          240 --KSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       240 --~~~~~~~~~~~~l~~~l~  257 (259)
                        .++++++++++.|++++.
T Consensus       376 ~~~t~edid~l~~~l~~~~~  395 (406)
T PRK13393        376 PLHTDADIEHLVQALSEIWA  395 (406)
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence              399999999999998765

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.83  E-value=1.1e-18  Score=152.16  Aligned_cols=241  Identities=13%  Similarity=0.144  Sum_probs=156.5

Q ss_pred             CCcccchhhhhhccCcccccc-cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCC
Q 024997            2 PFYPLYQEQTDYFESVDYKFE-GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFA   75 (259)
Q Consensus         2 P~y~~~~~~~~~~g~~~~~~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~   75 (259)
                      |+|..+...++..|.++..+. .|++++++.+++++++|++++|+||||.+.     .++|+++|+++|+|++|-.+.. 
T Consensus       121 ~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~-  199 (403)
T PRK07810        121 SCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLL-  199 (403)
T ss_pred             hHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcccc-
Confidence            345555556666677664333 467889999988999999999999999887     3889999999999999821111 


Q ss_pred             CCCCCCCCeEEEeccccccCCCcceE-EEEEecCHHHHH-HHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHH
Q 024997           76 PIPAPADEELMIFTISKLTGHAGSRF-GWAVIKDEAVYQ-RMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFG  153 (259)
Q Consensus        76 ~~~~~~~~~i~~~S~SK~~g~~G~R~-G~i~~~~~~~~~-~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~  153 (259)
                      .-+...+.++++.|+||.++.+|.++ |+++++ ++.+. .++.+......+++++.++.+.+.++         .+..+
T Consensus       200 ~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~-~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~---------tl~~R  269 (403)
T PRK07810        200 QRGLPLGADVVVYSGTKHIDGQGRVLGGAILGD-REYIDGPVQKLMRHTGPALSAFNAWVLLKGLE---------TLALR  269 (403)
T ss_pred             CChhhcCCcEEEccCCceecCCcCceeEEEEeC-hHHHHHHHHHHHHHhCCCCCHHHHHHHHhccC---------cHHHH
Confidence            11112245899999999998789888 788877 46554 46655555667788888887666665         56778


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCccccccccccc----cceeeCCCCCeeEEEecCCC---chHHHHHHHHHcCee------
Q 024997          154 YNTMKKRWENLSKIISLSNRFSLQEIAPQYCT----YFKKIRPPSPAYAWVKCERE---EDKDCYGILKAAKII------  220 (259)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gi~------  220 (259)
                      .++..++...+.+.|++.+.+.....|.....    .++......|-.+.+.++..   +.+.+.++++.-.+.      
T Consensus       270 ~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~f~~~l~l~~~~~sl  349 (403)
T PRK07810        270 VRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDKLRVIDISNNL  349 (403)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCHHHHHHHHHhCCceEEeccC
Confidence            88999999999999999887654444431111    01111123344556666542   244455666533331      


Q ss_pred             -------eecCC----ccc--------CCCCeEEEEeecChhhHHHHHHHHHHH
Q 024997          221 -------GREGK----KFR--------AEARFVRLSLLKSQDDFDLLLHRLDEL  255 (259)
Q Consensus       221 -------~~~g~----~f~--------~~~~~~Ris~~~~~~~~~~~~~~l~~~  255 (259)
                             ..|+.    .+.        .+++.+|+|++-  |+.+++++-|.+.
T Consensus       350 G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~lvR~svGl--E~~~dli~dl~~A  401 (403)
T PRK07810        350 GDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGL--EDTDDLIADLDRA  401 (403)
T ss_pred             CCCcceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHh
Confidence                   22321    111        135689999987  3445555555544

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.82  E-value=6.5e-19  Score=152.87  Aligned_cols=206  Identities=13%  Similarity=0.076  Sum_probs=147.2

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCC--CCCC--CCCCCCeEEE
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPH--FAPI--PAPADEELMI   87 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~--~~~~--~~~~~~~i~~   87 (259)
                      .|.+.+++.+++++.++++.+++|++|.+.         .++|+++|+++|+||+|  |+..  ....  .+..+.   +
T Consensus       153 ~dl~~l~~~l~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pd---i  229 (375)
T PRK04260        153 NDLNSVKALVNKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPD---I  229 (375)
T ss_pred             CCHHHHHHhcCCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCC---E
Confidence            377888888877788989999999999875         28899999999999999  4221  1111  122222   4


Q ss_pred             eccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHH
Q 024997           88 FTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKI  167 (259)
Q Consensus        88 ~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
                      .||||.++ +|+|+||++++ +++.+.+.......+.+.+++.|.++.++++..   ..+++.++.++..+..++.+.+.
T Consensus       230 ~t~sK~l~-~G~~ig~~~~~-~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~---~~~~~~~~~~~~~~~~~~~l~~~  304 (375)
T PRK04260        230 FTLAKGLA-NGVPVGAMLAK-SSLGGAFGYGSHGSTFGGNKLSMAAASATLDIM---LTAGFLEQALENGNYLQEQLQKA  304 (375)
T ss_pred             EEeccccc-CCcceEEEEEc-HHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHH
Confidence            59999998 89999999999 699888865445566788999999999999764   12345555555555555555555


Q ss_pred             HHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEe-ec-ChhhH
Q 024997          168 ISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSL-LK-SQDDF  245 (259)
Q Consensus       168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~-~~-~~~~~  245 (259)
                      +...+.             +..+. ..|+++|+.+... ...+.+.+.++||.+.|.     +.+.+|+++ .. +++++
T Consensus       305 ~~~~~~-------------~~~~~-~~g~~~~~~~~~~-~~~~~~~l~~~Gi~v~~~-----~~~~lR~~~~~~~t~~~i  364 (375)
T PRK04260        305 LQDKET-------------VTTVR-GLGYMIGIETTAD-LSQLVEAARDKGLIVLTA-----GTNVIRLLPPLTLTKEEI  364 (375)
T ss_pred             HhhCCC-------------eeEEe-ccceEEEEEecCc-HHHHHHHHHhCCCEEecC-----CCCEEEEcCCCccCHHHH
Confidence            543321             12222 3789999998543 444555566789999873     347899999 34 89999


Q ss_pred             HHHHHHHHHHh
Q 024997          246 DLLLHRLDELI  256 (259)
Q Consensus       246 ~~~~~~l~~~l  256 (259)
                      ++++++|++++
T Consensus       365 ~~~l~~l~~~~  375 (375)
T PRK04260        365 EQGIAILSEVF  375 (375)
T ss_pred             HHHHHHHHHhC
Confidence            99999998763

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.82  E-value=1.7e-18  Score=149.94  Aligned_cols=230  Identities=15%  Similarity=0.090  Sum_probs=150.9

Q ss_pred             hhhhhccCccc------ccccChhhhcccCC--CCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc-cCCCC
Q 024997            9 EQTDYFESVDY------KFEGEANLWGNASS--DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY-FWPHF   74 (259)
Q Consensus         9 ~~~~~~g~~~~------~~~~d~~~l~~~~~--~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y-~~~~~   74 (259)
                      ..++..|.++.      ++.+|++++++.++  ++++++++++|+||||.+.     .++|+++|+++|+|+++ |+...
T Consensus        97 ~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~  176 (368)
T PRK13479         97 QIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIP  176 (368)
T ss_pred             HHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCcc
Confidence            55566676542      24578888988874  3567889999999999997     38999999999999765 43222


Q ss_pred             CCCCCCCCCeEEEecccccc-CCCcceEEEEEecCHHHHHHHHHhhhh-----------------hcCCCCHHHHHHHHH
Q 024997           75 APIPAPADEELMIFTISKLT-GHAGSRFGWAVIKDEAVYQRMSAYISL-----------------NTMGVSRECQLRAFK  136 (259)
Q Consensus        75 ~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~i~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~q~~~~~  136 (259)
                      ..+ ...+..+++.|++|.+ |.+|  +||++++ +++++.+......                 ....++.+.+.++.+
T Consensus       177 ~~~-~~~~~d~~v~s~~K~l~g~~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~  252 (368)
T PRK13479        177 IDI-AELGIDALISSANKCIEGVPG--FGFVIAR-RSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQ  252 (368)
T ss_pred             ccc-cccCceEEEecCccccccCCC--ceEEEEC-HHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHH
Confidence            222 2234568888999965 7788  6999999 6888876543211                 112455555555555


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC---CchHHHHHH
Q 024997          137 LLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER---EEDKDCYGI  213 (259)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l  213 (259)
                      +++...+   ...+++..++++++++.+.+.|++++ +.+  +.+.        ....+..+.+.++.   .+.+.+.+.
T Consensus       253 al~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~  318 (368)
T PRK13479        253 ALLELEE---EGGVPARGARYANNQRTLVAGMRALG-FEP--LLDA--------EIQSPIIVTFHAPADPAYDFKEFYER  318 (368)
T ss_pred             HHHHHHH---hhCHHHHHHHHHHHHHHHHHHHHHcC-Ccc--cCCc--------hhcCceEEEEECCCCCCcCHHHHHHH
Confidence            5554311   12456677899999999999998874 211  0000        01111212222222   234556666


Q ss_pred             HHHcCeeeecCCcccCCCCeEEEEe-ec-ChhhHHHHHHHHHHHhhh
Q 024997          214 LKAAKIIGREGKKFRAEARFVRLSL-LK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       214 l~~~gi~~~~g~~f~~~~~~~Ris~-~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      |.++||.+++|..+.  .+++|+|. +. +.++++.+++.|++++++
T Consensus       319 L~~~gi~v~~g~~~~--~~~iRis~~~~~t~edi~~~l~~L~~~l~~  363 (368)
T PRK13479        319 LKEQGFVIYPGKLTQ--VDTFRIGCIGDVDAADIRRLVAAIAEALYW  363 (368)
T ss_pred             HHHCCEEEecCCCCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence            677899999876542  46899986 44 899999999999998764

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.82  E-value=3.6e-18  Score=147.61  Aligned_cols=229  Identities=13%  Similarity=0.053  Sum_probs=157.4

Q ss_pred             hhhhhccCccc------ccccChhhhcccCCC--CceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc-cCCCC
Q 024997            9 EQTDYFESVDY------KFEGEANLWGNASSD--THLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY-FWPHF   74 (259)
Q Consensus         9 ~~~~~~g~~~~------~~~~d~~~l~~~~~~--~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y-~~~~~   74 (259)
                      ..++..|.+..      +..+|++.+++.++.  +++++.+++++||||.+++     ++|+++|+++|+|+++ ++...
T Consensus        95 ~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~  174 (363)
T TIGR02326        95 QIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIP  174 (363)
T ss_pred             HHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcc
Confidence            44555676542      245788889988853  5677889999999999983     8999999999999877 33222


Q ss_pred             CCCCCCCCCeEEEecccccc-CCCcceEEEEEecCHHHHHHHHHhh------------------hhhcCCCCHHHHHHHH
Q 024997           75 APIPAPADEELMIFTISKLT-GHAGSRFGWAVIKDEAVYQRMSAYI------------------SLNTMGVSRECQLRAF  135 (259)
Q Consensus        75 ~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~i~~~~~~~~~~~~~~~------------------~~~~~~~~~~~q~~~~  135 (259)
                      ..+ ...+..++++|++|.+ |.+|  +||++++ ++.++.+....                  .......+.+.+.++.
T Consensus       175 ~~~-~~~~~D~~~~s~~K~l~~p~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~  250 (363)
T TIGR02326       175 IDI-AELHIDYLISSANKCIQGVPG--FGFVIAR-QAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFA  250 (363)
T ss_pred             cch-hhcCccEEEecCccccccCCc--ceEEEEC-HHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHH
Confidence            222 2334578999999977 5667  7999999 57777653210                  0011245677777776


Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC---CchHHHHH
Q 024997          136 KLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER---EEDKDCYG  212 (259)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  212 (259)
                      ++++...+   ...+++..++++++++.+.+.|++++ +.+  +.+        ....++...++.++.   .+...+.+
T Consensus       251 ~al~~l~~---~g~~~~~~~~~~~~~~~l~~~L~~~g-~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~v~~  316 (363)
T TIGR02326       251 QALLELEK---EGGVAARHQRYQQNQKTLVAGMRALG-FEP--LLD--------DEIQSPIITSFYSPEDPDYRFADFYQ  316 (363)
T ss_pred             HHHHHHHH---hhCHHHHHHHHHHHHHHHHHHHHHcC-Cee--ccC--------cccCCceEEEEECCCCCCCCHHHHHH
Confidence            67764321   12356678899999999999998764 111  000        012455667777764   24455666


Q ss_pred             HHHHcCeeeecCCcccCCCCeEEEEe-ec-ChhhHHHHHHHHHHHhh
Q 024997          213 ILKAAKIIGREGKKFRAEARFVRLSL-LK-SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       213 ll~~~gi~~~~g~~f~~~~~~~Ris~-~~-~~~~~~~~~~~l~~~l~  257 (259)
                      .|+++||.+++|..+.  .+++|||+ +. +.++++.+++.|++++.
T Consensus       317 ~L~~~gi~v~~g~~~~--~~~iRi~~~~~~~~edv~~~l~~l~~~l~  361 (363)
T TIGR02326       317 RLKEQGFVIYPGKVSQ--VDCFRIGNIGEVDAADITRLLTAIGKAMY  361 (363)
T ss_pred             HHHHCCEEEECCcCCC--CCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            6778899999987663  47899996 54 89999999999998763

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.81  E-value=2.2e-18  Score=149.84  Aligned_cols=234  Identities=12%  Similarity=0.092  Sum_probs=153.5

Q ss_pred             hhhhhccCccccccc-ChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCC
Q 024997            9 EQTDYFESVDYKFEG-EANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPAD   82 (259)
Q Consensus         9 ~~~~~~g~~~~~~~~-d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~   82 (259)
                      ..++..|.++..+.. |++++++.+++++++|++++|+||||.+.     .++|+++|+++|+|++|..+.. ..+...+
T Consensus       111 ~~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~-~~~~~~g  189 (390)
T PRK08064        111 EVLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLL-QKPLDLG  189 (390)
T ss_pred             HHHHHcCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccc-cCchhhC
Confidence            334446766543333 67889888888999999999999999998     3889999999999999832111 1111234


Q ss_pred             CeEEEeccccccC-CCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 024997           83 EELMIFTISKLTG-HAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRW  161 (259)
Q Consensus        83 ~~i~~~S~SK~~g-~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  161 (259)
                      .++++.|+||.++ .+|+..|++++.++++++.++..........++...+.   .++      .-+.+..++++..++.
T Consensus       190 ~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l---~~~------gl~tl~~R~~~~~~~a  260 (390)
T PRK08064        190 ADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWL---VLR------GLKTLHVRLEHSSETA  260 (390)
T ss_pred             CcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH---HHc------ccCcHHHHHHHHHHHH
Confidence            5789999999985 56677788877656899988887776555555543332   223      3346778899999999


Q ss_pred             HHHHHHHHhcCCCccccccccc----cccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCe---eeecC----------
Q 024997          162 ENLSKIISLSNRFSLQEIAPQY----CTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKI---IGREG----------  224 (259)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi---~~~~g----------  224 (259)
                      ..+.+.|++.+.+.-...+...    ...++......|..+.+.+..  .+.+..++++.++   .++-|          
T Consensus       261 ~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~--~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~  338 (390)
T PRK08064        261 NKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQS--EEAVRQFVSHVKLPVFAVSLGAVESILSYPA  338 (390)
T ss_pred             HHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECC--HHHHHHHHHhCCcceEcccCCCCcceeECCc
Confidence            9999999998865433333211    111221122334455566653  4567788888887   55556          


Q ss_pred             --Cccc----------CCCCeEEEEeec--ChhhHHHHHHHHHH
Q 024997          225 --KKFR----------AEARFVRLSLLK--SQDDFDLLLHRLDE  254 (259)
Q Consensus       225 --~~f~----------~~~~~~Ris~~~--~~~~~~~~~~~l~~  254 (259)
                        .+..          .+++.+|+|++-  .++.++++.+.|++
T Consensus       339 ~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~  382 (390)
T PRK08064        339 KMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSY  382 (390)
T ss_pred             ccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHh
Confidence              2222          125789999987  23335555555544

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.81  E-value=3.9e-18  Score=147.55  Aligned_cols=231  Identities=14%  Similarity=0.090  Sum_probs=150.3

Q ss_pred             hccCccccccc-ChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEE
Q 024997           13 YFESVDYKFEG-EANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELM   86 (259)
Q Consensus        13 ~~g~~~~~~~~-d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~   86 (259)
                      ..|.++..+.. |++++++.+++++++|++.+|+||+|.+.     .++|+++|+++|+|++|-.+.. .-+-..+.+++
T Consensus       102 ~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~-~~~~~~g~Div  180 (369)
T cd00614         102 KLGIEVTFVDPDDPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL-QRPLELGADIV  180 (369)
T ss_pred             hcCeEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc-CChhhhCCcEE
Confidence            34555433333 46788888888899999999999999998     3889999999999999821111 11112345799


Q ss_pred             EeccccccCCCc-ceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 024997           87 IFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLS  165 (259)
Q Consensus        87 ~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (259)
                      +.|+||.++.+| ++.||+++++++++++++......+.+.+++.++++...++         .+..++++..++...+.
T Consensus       181 v~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~---------tl~~r~~~~~~na~~la  251 (369)
T cd00614         181 VHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLK---------TLPLRMERHSENALKVA  251 (369)
T ss_pred             EeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCC---------CHHHHHHHHHHHHHHHH
Confidence            999999997665 89999999844888988887766667777776665544443         45567888999999999


Q ss_pred             HHHHhcCCCccccccccccc----cceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeee---ecC------------Cc
Q 024997          166 KIISLSNRFSLQEIAPQYCT----YFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIG---REG------------KK  226 (259)
Q Consensus       166 ~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~---~~g------------~~  226 (259)
                      +.|++.+.+....++.....    .++......|..+.+.++. +.+.+.++++.-.+..   .-|            .+
T Consensus       252 ~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~-~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~  330 (369)
T cd00614         252 EFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKG-GLEAAKKFLNALKLFSLAVSLGGVESLVEHPASMTH  330 (369)
T ss_pred             HHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCC-CHHHHHHHHHcCCcceEcccCCCCceeeeCCccccc
Confidence            99999886543323321000    0111112234455566653 4555666666655541   111            11


Q ss_pred             c----------cCCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          227 F----------RAEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       227 f----------~~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      .          +.+++.+|+|++-  |+.+++++-|.+.+
T Consensus       331 ~~~~~~~~~~~g~~~~liR~svGl--E~~~dl~~dl~~al  368 (369)
T cd00614         331 SQLPPEERAAAGITPGLVRLSVGI--EDVEDLIADLEQAL  368 (369)
T ss_pred             ccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHhh
Confidence            1          1125789999988  44555666555544

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.81  E-value=1.1e-18  Score=151.21  Aligned_cols=213  Identities=15%  Similarity=0.052  Sum_probs=141.8

Q ss_pred             cccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCC-CCCCCCCCCeEEEecccccc
Q 024997           21 FEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHF-APIPAPADEELMIFTISKLT   94 (259)
Q Consensus        21 ~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~-~~~~~~~~~~i~~~S~SK~~   94 (259)
                      +.+|+++|++.+.++++++++++|+||||.+.     .++|+++|+++++|++|..+.. ..+ ...+..+++.|++|.+
T Consensus       125 ~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~~d~~~~s~~K~~  203 (373)
T cd06453         125 GQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDV-QDLGCDFLAFSGHKML  203 (373)
T ss_pred             CCcCHHHHHHHhcCCceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeec-cccCCCEEEecccccc
Confidence            45788999999988999999999999999997     3889999999999998831111 111 1224567788999999


Q ss_pred             CCCcceEEEEEecCHHHHHHHHHhhhhh---------------------cCCCCHHHHHHHHHHHHHHHhcCCcchHHHH
Q 024997           95 GHAGSRFGWAVIKDEAVYQRMSAYISLN---------------------TMGVSRECQLRAFKLLKVVLEDGGNNIFEFG  153 (259)
Q Consensus        95 g~~G~R~G~i~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~  153 (259)
                      +.  .++|+++++ +++++.+.......                     ...++.....+..++++...    +.-+++.
T Consensus       204 ~~--~g~g~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~----~~g~~~~  276 (373)
T cd06453         204 GP--TGIGVLYGK-EELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLE----KIGMEAI  276 (373)
T ss_pred             CC--CCcEEEEEc-hHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHH----HcCHHHH
Confidence            85  458999998 68888766532110                     01223333333344444321    1123556


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccC----
Q 024997          154 YNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRA----  229 (259)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~----  229 (259)
                      .++.+++++.+.+.|++++++.+.  .+         ....+..+++.++..+.+.+.+.|.++||.+.+|..+..    
T Consensus       277 ~~~~~~~~~~l~~~l~~~~~~~~~--~~---------~~~~~~~~~~~~~~~~~~~i~~~l~~~gi~i~~g~~~~~~~~~  345 (373)
T cd06453         277 AAHEHELTAYALERLSEIPGVRVY--GD---------AEDRAGVVSFNLEGIHPHDVATILDQYGIAVRAGHHCAQPLMR  345 (373)
T ss_pred             HHHHHHHHHHHHHHHhcCCCeEEe--CC---------ccccCCeEEEEECCcCHHHHHHHHHHCCEEeccCccchhHHHH
Confidence            777778888888888876543221  00         111234556666654555666666779999988875531    


Q ss_pred             ---CCCeEEEEeec--ChhhHHHHHHHH
Q 024997          230 ---EARFVRLSLLK--SQDDFDLLLHRL  252 (259)
Q Consensus       230 ---~~~~~Ris~~~--~~~~~~~~~~~l  252 (259)
                         ..+++|+|++.  +.++++++++.|
T Consensus       346 ~~~~~~~iRis~~~~~t~~di~~~~~~l  373 (373)
T cd06453         346 RLGVPGTVRASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             HhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence               25799999975  889999988764

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.81  E-value=1.2e-18  Score=153.48  Aligned_cols=210  Identities=10%  Similarity=-0.010  Sum_probs=140.1

Q ss_pred             hhhcccCC-----CCceEEEEcCC--CCCChhhH--------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEE
Q 024997           26 NLWGNASS-----DTHLVEFVTAP--NNPDGQMN--------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMI   87 (259)
Q Consensus        26 ~~l~~~~~-----~~~~~i~i~~p--~NPtG~~~--------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~   87 (259)
                      +.|++.+.     ++..+ ++..|  +|+.+...        .++|+++|+++|+||+|  ++....... +..+.+..+
T Consensus       185 ~~l~~~l~~~~~~~~~aa-vi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi  263 (425)
T PRK08088        185 ASIERIFKNDAAPEDIAA-IIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADL  263 (425)
T ss_pred             HHHHHHHHhccCCCceEE-EEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCE
Confidence            34666553     34455 55555  46644443        28999999999999998  322111111 122334558


Q ss_pred             eccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHH
Q 024997           88 FTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKI  167 (259)
Q Consensus        88 ~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
                      .||||.++ +|+|+||++++ +++++.+.......+.+.+++.|.++.++++..   ..+++++..++..+..++.+...
T Consensus       264 ~s~sK~l~-~G~rig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~~~l~~l  338 (425)
T PRK08088        264 TTFAKSIA-GGFPLAGVTGR-AEVMDAIAPGGLGGTYAGNPIACAAALAVLKVF---EQENLLQKANALGEKLKDGLLAI  338 (425)
T ss_pred             EEEecccc-CCCcceeeEec-HHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHHHH
Confidence            99999998 99999999999 799999877777778889999999999999864   23345555554444444444433


Q ss_pred             HHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---------chHHHHHHHHHcCeeeecCCcccCCCCeEEEEe
Q 024997          168 ISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---------EDKDCYGILKAAKIIGREGKKFRAEARFVRLSL  238 (259)
Q Consensus       168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~  238 (259)
                      ++..+.             +...... |+++|+.+...         ....+...+.++||.+.|+..+   ++.+||++
T Consensus       339 ~~~~~~-------------~~~v~g~-G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~---~~~iRl~~  401 (425)
T PRK08088        339 AEKHPE-------------IGDVRGL-GAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPY---YNVLRILV  401 (425)
T ss_pred             HHhCCC-------------eEEEecc-ceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCC---CCEEEEEC
Confidence            333321             2222333 88899988321         1233444455689988875444   37899999


Q ss_pred             ec--ChhhHHHHHHHHHHHhhh
Q 024997          239 LK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       239 ~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      +.  +++++++++++|.+.+..
T Consensus       402 ~~~~t~~ei~~~i~~l~~~l~~  423 (425)
T PRK08088        402 PLTIEDAQIRQGLEIIAQCFDE  423 (425)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHh
Confidence            73  899999999999998875

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.81  E-value=3.2e-18  Score=147.80  Aligned_cols=225  Identities=9%  Similarity=0.039  Sum_probs=137.9

Q ss_pred             hhhhhccCccc--------ccccChhhhcccCC-------CCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecc
Q 024997            9 EQTDYFESVDY--------KFEGEANLWGNASS-------DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         9 ~~~~~~g~~~~--------~~~~d~~~l~~~~~-------~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~   68 (259)
                      ..++..|.++.        .|.+|++.|++.++       ++++++++++|+||||.+.     .++|+++|+++|+|++
T Consensus        98 ~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a  177 (361)
T cd06452          98 VAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGA  177 (361)
T ss_pred             HHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECC
Confidence            34566666542        24678888888774       3688999999999999986     3789999999999999


Q ss_pred             ccCCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhc------C--CCCHHHHHHHHHHHH
Q 024997           69 YFWPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNT------M--GVSRECQLRAFKLLK  139 (259)
Q Consensus        69 y~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~------~--~~~~~~q~~~~~~l~  139 (259)
                      |.... ..+. ...+.+++++|+||.++ ++.|+||++++ +++++++........      .  ......+..+.+.++
T Consensus       178 ~~~g~-~~~~~~~~~~d~~~~s~~K~l~-~~~~~G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~  254 (361)
T cd06452         178 YTVGR-MPVSGKELGADFIVGSGHKSMA-ASAPIGVLATT-EEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFP  254 (361)
T ss_pred             cccCC-cCCCHHHcCCCEEEecCCcccc-CCCCeEEEEEC-HHHHHHHhccccccccceeeeeccccCchHHHHHHHHHH
Confidence            93111 1121 12356899999999998 56699999999 699998866443210      1  111112333333343


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---------chHHH
Q 024997          140 VVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---------EDKDC  210 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~  210 (259)
                      .     ..+++.+.. +..++.+.+.+.|++++++.+...           .+....++.++.+..         ....+
T Consensus       255 ~-----~~~~~~~~~-~~~~~~~~l~~~L~~l~g~~v~~~-----------~~~~~n~~~~~~~~~~~~~~~~~~~~~~~  317 (361)
T cd06452         255 H-----VKERVKRWD-EEVEKARWFVAELEKIEGIKQLGE-----------KPKNHDLMFFETPSFDEIAKKHKRRGYFL  317 (361)
T ss_pred             H-----HHHHHHHHH-HHHHHHHHHHHHHhcCCCeEEECC-----------CCCCCceEEEEcCCcchhhhhccccchhH
Confidence            2     112232222 223445777888887754322100           112233444443311         11234


Q ss_pred             HHHHHHcCeeeecCCcccCCCCeEEEEee-cChhhHHHHHHHHHHHhh
Q 024997          211 YGILKAAKIIGREGKKFRAEARFVRLSLL-KSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       211 ~~ll~~~gi~~~~g~~f~~~~~~~Ris~~-~~~~~~~~~~~~l~~~l~  257 (259)
                      .+.|.++||.+.    +....+++|++.. .++++++.+++.|+++.+
T Consensus       318 ~~~L~~~gI~~~----~~~~~~~~ri~~~g~~~e~~~~l~~al~~~~~  361 (361)
T cd06452         318 YSELKKRGIHGI----KPGLTRYFKLSTYGLTWEQVEYVVDAFKEIAE  361 (361)
T ss_pred             HHHHHHcCceEE----cCCCceEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            455556799842    1222468999983 489999999999987653

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.81  E-value=5.4e-18  Score=147.34  Aligned_cols=220  Identities=14%  Similarity=0.112  Sum_probs=143.8

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCC-CCCCCCCCCCeEEEeccccccCC
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPH-FAPIPAPADEELMIFTISKLTGH   96 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~-~~~~~~~~~~~i~~~S~SK~~g~   96 (259)
                      .|+++|++.+++++++|++++|+||||.+.     .++|+++|+++|+|++|-.+. ..++  ..+..+++.|+||.++.
T Consensus       134 ~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~--~~gaDivv~S~sK~l~g  211 (388)
T PRK07811        134 SDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPL--ALGADVVVHSTTKYIGG  211 (388)
T ss_pred             CCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCch--hhCCcEEEecCceeecC
Confidence            578889999988999999999999999987     388999999999999982111 1111  22346999999999976


Q ss_pred             C-cceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 024997           97 A-GSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFS  175 (259)
Q Consensus        97 ~-G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  175 (259)
                      + +.+.||++++++++.+.+...........++...+.+...++         .+..++++.+++...+.+.|++.+.+.
T Consensus       212 ~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~---------tl~~R~~~~~~na~~la~~L~~~p~v~  282 (388)
T PRK07811        212 HSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLK---------TLAVRMDRHSENAEAVAEFLAGHPEVS  282 (388)
T ss_pred             CCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccC---------cHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            4 467899998766787777766555455566665444444443         466678888999999999999998776


Q ss_pred             ccccccccccc----ceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCccc-----------------------
Q 024997          176 LQEIAPQYCTY----FKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFR-----------------------  228 (259)
Q Consensus       176 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~-----------------------  228 (259)
                      ....|......    ++......|-.+.++++. +.+.+.+++++-.+. ..+.++|                       
T Consensus       283 ~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~-~~~~~~~f~~~l~~~-~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g  360 (388)
T PRK07811        283 TVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAG-GEEAARDFCARTKVF-TLAESLGGVESLIEHPSAMTHASTAGSQLE  360 (388)
T ss_pred             EEECCCCCCCchHHHHHHhcCCCCceEEEEeCC-CHHHHHHHHHhCCcc-eeeccCCCCcceEeCCcccCcccCCHhhcC
Confidence            44444321110    111111234455667753 344455666554441 1121221                       


Q ss_pred             CCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          229 AEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       229 ~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      .+++.+|||++-  |+.+++++-|.+.|+
T Consensus       361 i~~~liR~svGl--E~~~dl~~dl~~al~  387 (388)
T PRK07811        361 VPDDLVRLSVGI--EDVADLLADLEQALG  387 (388)
T ss_pred             CCCCEEEEEeCC--CCHHHHHHHHHHHhh
Confidence            125789999987  344555555555553

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.80  E-value=6.2e-18  Score=146.71  Aligned_cols=197  Identities=13%  Similarity=0.162  Sum_probs=130.6

Q ss_pred             hhhhhccCccccccc-ChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCC-CCCCCCCC
Q 024997            9 EQTDYFESVDYKFEG-EANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPH-FAPIPAPA   81 (259)
Q Consensus         9 ~~~~~~g~~~~~~~~-d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~-~~~~~~~~   81 (259)
                      ..+...|..+..+.. |++++++.+++++++|++++|+||+|.+.     .++|+++|+++|+|++|-.+. ..++  ..
T Consensus       112 ~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~pl--~~  189 (380)
T TIGR01325       112 EILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQPL--KL  189 (380)
T ss_pred             HHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch--hh
Confidence            344555665543333 57788888888899999999999999987     388999999999999982111 1111  22


Q ss_pred             CCeEEEeccccccCCCcceE-EEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 024997           82 DEELMIFTISKLTGHAGSRF-GWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKR  160 (259)
Q Consensus        82 ~~~i~~~S~SK~~g~~G~R~-G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  160 (259)
                      +.++++.|+||.++.+|.++ |+++++ +++++.++..........++...+.+   ++      ..+.+..+.++..++
T Consensus       190 g~Divv~S~sK~l~g~g~~~gG~vv~~-~~~~~~l~~~~~~~g~~~~p~~a~~~---l~------~l~tl~~r~~~~~~~  259 (380)
T TIGR01325       190 GADVVVYSATKHIDGQGRVMGGVIAGS-EELMAEVAVYLRHTGPAMSPFNAWVL---LK------GLETLSLRMQKQFDS  259 (380)
T ss_pred             CCCEEEeeccceecCCCCeEEEEEEeC-HHHHHHHHHHHHhhCCCCCHHHHHHH---Hh------ccCcHHHHHHHHHHH
Confidence            45788999999998888887 677777 68888888776655555566544433   33      234666788899999


Q ss_pred             HHHHHHHHHhcCCCccccccccccc----cceeeCCCCCeeEEEecCCCchHHHHHHHHHcCe
Q 024997          161 WENLSKIISLSNRFSLQEIAPQYCT----YFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKI  219 (259)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi  219 (259)
                      +..+.+.|++++.+.....|.....    .++......|..+.+.++  +.+.+.++++.-.+
T Consensus       260 a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~--~~~~~~~f~~~l~~  320 (380)
T TIGR01325       260 ALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA--DRAAAWKVLDAVEL  320 (380)
T ss_pred             HHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--CHHHHHHHHHcCCc
Confidence            9999999999886653333321111    122112233445666676  34545555554443

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.80  E-value=4.7e-18  Score=148.36  Aligned_cols=158  Identities=16%  Similarity=0.194  Sum_probs=115.3

Q ss_pred             hhhccCccccccc-ChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCC-CCCCCCCCCC
Q 024997           11 TDYFESVDYKFEG-EANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPH-FAPIPAPADE   83 (259)
Q Consensus        11 ~~~~g~~~~~~~~-d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~-~~~~~~~~~~   83 (259)
                      +...|.++..+.+ |++.+++.+++++++|++++|+||||.+.     .++|+++|+++|+|++|-.+. ..++  ..+.
T Consensus       125 ~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~l--~~g~  202 (403)
T PRK07503        125 LGEFGVTVRHVDLTDPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPL--ELGA  202 (403)
T ss_pred             HhhCCEEEEEeCCCCHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch--hhCC
Confidence            3445665543333 57889998888999999999999999997     388999999999999992111 1111  1244


Q ss_pred             eEEEeccccccCCCc-ceEEEEEecCHHHHHHHHHh--hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 024997           84 ELMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAY--ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKR  160 (259)
Q Consensus        84 ~i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  160 (259)
                      +++++|+||.++.+| +|.|+++.+ ++++++++..  ....+.+.+++.++.+.+.++         .+..+.++..++
T Consensus       203 Di~v~S~tK~l~g~gd~~gG~v~~~-~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~---------tl~~r~~~~~~n  272 (403)
T PRK07503        203 DLVVHSATKYLGGHGDITAGLVVGG-KALADRIRLEGLKDMTGAVMSPFDAFLLMRGLK---------TLALRMDRHCAS  272 (403)
T ss_pred             CEEEccccccccCCCceeEEEEEcC-HHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcc---------hHHHHHHHHHHH
Confidence            699999999998765 788999977 7888888743  333456677776665554444         556667777899


Q ss_pred             HHHHHHHHHhcCCCcccccc
Q 024997          161 WENLSKIISLSNRFSLQEIA  180 (259)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~  180 (259)
                      ...+.+.|++.+.+.....|
T Consensus       273 a~~~a~~L~~~p~v~~V~~P  292 (403)
T PRK07503        273 AQAVAEWLARHPAVELVHYP  292 (403)
T ss_pred             HHHHHHHHHhCCCccEEECC
Confidence            99999999998876644444

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.80  E-value=2.7e-18  Score=150.28  Aligned_cols=209  Identities=11%  Similarity=0.053  Sum_probs=141.2

Q ss_pred             cChhhhcccCC-CCceEEEEcCCCCCChhhHH---------HhhcCCCcEEEeeccc--cCCCCCC--C--CCCCCCeEE
Q 024997           23 GEANLWGNASS-DTHLVEFVTAPNNPDGQMNK---------AVLKGPYAKSIYDHAY--FWPHFAP--I--PAPADEELM   86 (259)
Q Consensus        23 ~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~~---------~la~~~~~~vi~De~y--~~~~~~~--~--~~~~~~~i~   86 (259)
                      .|+++|++.+. ++++++++..++||||.+++         ++|+++|+++|+||+|  ++.....  .  .+..+ .  
T Consensus       165 ~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~p-d--  241 (400)
T PTZ00125        165 NDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKP-D--  241 (400)
T ss_pred             CCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCC-C--
Confidence            37888998885 67889888888999998873         7899999999999998  4221111  1  11111 2  


Q ss_pred             EeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 024997           87 IFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSK  166 (259)
Q Consensus        87 ~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (259)
                      +.++||.++..++|+||++++ +++++.+.......+.+.+++.|.++.+.++...++   +    ..++.+++.+.+.+
T Consensus       242 ~~~~sK~l~~g~~~ig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~---~----~~~~~~~~~~~l~~  313 (400)
T PTZ00125        242 IVLLGKALSGGLYPISAVLAN-DDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEE---K----LAENAQRLGEVFRD  313 (400)
T ss_pred             EEEEcccccCCCcCcEEEEEc-HHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhc---C----HHHHHHHHHHHHHH
Confidence            335789998444699999999 699998876555556778899999888887754211   2    23445555566666


Q ss_pred             HHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---c-hHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--c
Q 024997          167 IISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---E-DKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--K  240 (259)
Q Consensus       167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~  240 (259)
                      .|+++..    ..     ..+....+ .|.+.++.++..   . .++...++ ++||.+.|+     +.+++||+..  .
T Consensus       314 ~l~~l~~----~~-----~~~~~~~~-~g~~~~v~~~~~~~~~~~~~~~~l~-~~Gv~v~~~-----~~~~lRi~~~~~~  377 (400)
T PTZ00125        314 GLKELLK----KS-----PWVKEIRG-KGLLNAIVFDHSDGVNAWDLCLKLK-ENGLLAKPT-----HDNIIRFAPPLVI  377 (400)
T ss_pred             HHHHHHh----cC-----CCeEEEec-ccEEEEEEEccCcchHHHHHHHHHH-HCCeEEeec-----CCCEEEEECCccC
Confidence            6654311    00     01222333 566667766531   2 34444444 789999874     3478999964  5


Q ss_pred             ChhhHHHHHHHHHHHhhh
Q 024997          241 SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       241 ~~~~~~~~~~~l~~~l~~  258 (259)
                      +++++++++++|.+++.+
T Consensus       378 ~~~~i~~~l~~l~~~l~~  395 (400)
T PTZ00125        378 TKEQLDQALEIIKKVLKS  395 (400)
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999999988763

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.80  E-value=6.7e-18  Score=146.50  Aligned_cols=243  Identities=14%  Similarity=0.088  Sum_probs=155.4

Q ss_pred             CCCcccchhhhhh---ccCcccccccChhhhcccCCC-CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccC
Q 024997            1 MPFYPLYQEQTDY---FESVDYKFEGEANLWGNASSD-THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFW   71 (259)
Q Consensus         1 ~P~y~~~~~~~~~---~g~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~   71 (259)
                      +|.|+.+...++.   .|.++..+.+|++++++.+++ ++++|++++|+||||.++     .++|+++|+++|+|++|-.
T Consensus        99 ~~~y~~~~~~~~~~~~~g~~v~~~~~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~  178 (385)
T PRK08574         99 MEAYGTTLRLLKSLEKFGVKVVLAYPSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFAT  178 (385)
T ss_pred             CCCchhHHHHHHHhhccCcEEEEECCCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCc
Confidence            3677776655533   355554456788889999987 899999999999999998     3889999999999999821


Q ss_pred             CC-CCCCCCCCCCeEEEeccccccCCCcce-EEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcch
Q 024997           72 PH-FAPIPAPADEELMIFTISKLTGHAGSR-FGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNI  149 (259)
Q Consensus        72 ~~-~~~~~~~~~~~i~~~S~SK~~g~~G~R-~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  149 (259)
                      +. ..++  ..+.++++.|+||.++.+|-. .|++++.++++.++++......+.+.+++..+.+...++         .
T Consensus       179 ~~~~~~l--~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~---------t  247 (385)
T PRK08574        179 PLLYRPL--RHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLK---------T  247 (385)
T ss_pred             cccCChh--hhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccC---------c
Confidence            11 1111  234589999999999766655 476666547888888877766666677764444444433         5


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc----ceeeCC--CCCeeEEEecCCCchHHHHHHHHHcCeee--
Q 024997          150 FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTY----FKKIRP--PSPAYAWVKCEREEDKDCYGILKAAKIIG--  221 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~~gi~~--  221 (259)
                      +..+.++..++...+.+.|++.+.+.....|....+.    .+....  ..|..+.++++. +.+.+.+++++-.+..  
T Consensus       248 L~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~-~~~~~~~~~~~l~l~~~~  326 (385)
T PRK08574        248 LEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKG-GRDAVLKFLRSLKLIKPS  326 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCC-CHHHHHHHHHcCCcceEc
Confidence            6667888888999999999998876544444322110    111111  134455666653 3455556665544422  


Q ss_pred             -ecCCcc----------------------cCCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          222 -REGKKF----------------------RAEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       222 -~~g~~f----------------------~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                       .-|...                      +..++.+|||++-  |+.+.+++-|.+.++
T Consensus       327 ~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dli~dl~~al~  383 (385)
T PRK08574        327 PSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVGL--EDVEDLIEDLDQALG  383 (385)
T ss_pred             cCCCCCcceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHh
Confidence             112111                      1124689999987  334445555555443

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.79  E-value=5.5e-18  Score=147.28  Aligned_cols=216  Identities=17%  Similarity=0.122  Sum_probs=142.0

Q ss_pred             cccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccccCCCCCCCC-CCCCCeEEEecccccc
Q 024997           21 FEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYFWPHFAPIP-APADEELMIFTISKLT   94 (259)
Q Consensus        21 ~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~~~~~~~~~-~~~~~~i~~~S~SK~~   94 (259)
                      +.+|++++++.++++++++++++++||||.+++     ++|+++|+++++|+++..+. .++. ...+.++++.|.+|.+
T Consensus       122 g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~-~~~~~~~~~~D~~~~s~~K~~  200 (379)
T TIGR03402       122 GRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGK-IPIDLKEMNIDMLSLSGHKLH  200 (379)
T ss_pred             CcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccc-cccCcccCCCCEEEEcHHHcC
Confidence            357889999999889999999999999999994     89999999999999883111 1221 2345578888999988


Q ss_pred             CCCcceEEEEEecCHHHHHHHHHhhh-------hhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHH
Q 024997           95 GHAGSRFGWAVIKDEAVYQRMSAYIS-------LNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKI  167 (259)
Q Consensus        95 g~~G~R~G~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
                      |.+|  +|++++.+ +..  +.....       .....++.+.-.+..++++.     ...++++..++.+++++.+.+.
T Consensus       201 gp~G--~g~l~v~~-~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~-----~~~~~~~~~~~~~~l~~~l~~~  270 (379)
T TIGR03402       201 GPKG--VGALYIRK-GTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAEL-----ATEHLEEENTRVRALRDRLEAG  270 (379)
T ss_pred             CCCc--eEEEEECC-CCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHH
Confidence            8778  88888773 431  111110       01112223333334444443     1234566677888888888888


Q ss_pred             HHh-cCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCC----------------
Q 024997          168 ISL-SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAE----------------  230 (259)
Q Consensus       168 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~----------------  230 (259)
                      |++ ++++.+..  +      ......+...+|+  +..+.+.+...|+++||.+++|..|..+                
T Consensus       271 l~~~~~~~~~~~--~------~~~~~~~~~~~~~--~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~  340 (379)
T TIGR03402       271 LLARIPDARLNG--D------PTKRLPNTVNISF--EYIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHT  340 (379)
T ss_pred             HHhhCCCEEEeC--C------CccCCCCEEEEEe--cCCCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChh
Confidence            875 55432211  0      0000012233444  3334566666778899999999877532                


Q ss_pred             --CCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          231 --ARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       231 --~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                        .+.+|+|++.  +.++++++++.|+++++
T Consensus       341 ~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~  371 (379)
T TIGR03402       341 AAHGSIRFSLSRYNTEEDIDYVLEVLPPIIA  371 (379)
T ss_pred             hcCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence              3689999976  88999999999998765

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.79  E-value=5.4e-18  Score=148.49  Aligned_cols=210  Identities=16%  Similarity=0.071  Sum_probs=147.9

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH----------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEec
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN----------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFT   89 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~----------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S   89 (259)
                      .|.+.|++.+.++++++++ +|.||+|.+.          .++|+++|+++|+||+|  |+....... ...+...-+.|
T Consensus       171 ~d~~~l~~~l~~~~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t  249 (406)
T PRK12381        171 NDLNSASALIDDQTCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLT  249 (406)
T ss_pred             CCHHHHHHhccCCeeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEEE
Confidence            5678888888777777555 7999999764          28999999999999999  422111111 01111111469


Q ss_pred             cccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHH
Q 024997           90 ISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIIS  169 (259)
Q Consensus        90 ~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  169 (259)
                      +||.++ .|+|+||++++ +++++.+.......+++.+++.|.++.+.++...       -++.+++++++.+.+.+.|+
T Consensus       250 ~sK~l~-gG~~ig~~~~~-~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~-------~~~~~~~~~~~~~~l~~~L~  320 (406)
T PRK12381        250 TAKALG-GGFPIGAMLTT-EKCASVMTVGTHGTTYGGNPLASAVAGKVLELIN-------TPEMLNGVKQRHDWFVERLN  320 (406)
T ss_pred             ehhhhh-CCCceEEEEEc-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-------hccHHHHHHHHHHHHHHHHH
Confidence            999998 89999999999 6999988765555677889999999999887531       12357788888888888887


Q ss_pred             hcCCCccccccccccccceeeCCCCCeeEEEecCCC---chHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhh
Q 024997          170 LSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDD  244 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~  244 (259)
                      ++..    ..     ..+.. ....|.++++.+...   ....+...+.++||.+.+.     +++.+||++.  .++++
T Consensus       321 ~l~~----~~-----~~~~~-vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~-----g~~~lRl~p~~~~t~~~  385 (406)
T PRK12381        321 TINA----RY-----GLFSE-IRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIA-----GPNVVRFAPALNISEEE  385 (406)
T ss_pred             HHHh----hC-----CCEEE-EecCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeC-----CCCEEEEeCCccCCHHH
Confidence            6531    00     00111 223467777776542   2345556677899999762     3478999985  48999


Q ss_pred             HHHHHHHHHHHhh
Q 024997          245 FDLLLHRLDELIS  257 (259)
Q Consensus       245 ~~~~~~~l~~~l~  257 (259)
                      +++++++|.+++.
T Consensus       386 i~~~~~~l~~~l~  398 (406)
T PRK12381        386 ITTGLDRFARACE  398 (406)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998875

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.79  E-value=9.7e-18  Score=145.29  Aligned_cols=243  Identities=14%  Similarity=0.097  Sum_probs=156.0

Q ss_pred             CCcccchhh----hhhccCcccccc-cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccC
Q 024997            2 PFYPLYQEQ----TDYFESVDYKFE-GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFW   71 (259)
Q Consensus         2 P~y~~~~~~----~~~~g~~~~~~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~   71 (259)
                      |.|+.+...    +...|.++..+. .|++++++.++++++++++++|+||||.+.     .++|+++|+++|+|++|..
T Consensus        93 ~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~  172 (378)
T TIGR01329        93 DLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMS  172 (378)
T ss_pred             CCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcc
Confidence            556554443    233566654333 368889999998999999999999999887     3889999999999999842


Q ss_pred             CC-CCCCCCCCCCeEEEeccccccC-CCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcch
Q 024997           72 PH-FAPIPAPADEELMIFTISKLTG-HAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNI  149 (259)
Q Consensus        72 ~~-~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  149 (259)
                      +. ..++  ..+-+++++|++|.++ ..|++.|++++.++++.+++.........+.++...+.+..         .-+.
T Consensus       173 ~~~~~~l--~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~---------~l~t  241 (378)
T TIGR01329       173 PLLCNPL--ELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLR---------GIKT  241 (378)
T ss_pred             cccCChh--hcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHc---------cCCC
Confidence            21 1112  2245799999999885 45688999998656777878776664555666654432222         3346


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc-c---ceeeCCCCCeeEEEecCCCc-hHHHHHHHHHcCeeeecC
Q 024997          150 FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCT-Y---FKKIRPPSPAYAWVKCEREE-DKDCYGILKAAKIIGREG  224 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~gi~~~~g  224 (259)
                      +..+.++..++...+.+.|++.+.+....++..... .   ++......|..+.+++...+ ...+...|+..++.++.|
T Consensus       242 l~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L~~~~i~~s~G  321 (378)
T TIGR01329       242 LAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEATKLFSITVSFG  321 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCcCcccccCCC
Confidence            777899999999999999999887643333321111 0   11111123345555664322 344555566667777777


Q ss_pred             Cccc----------------------CCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          225 KKFR----------------------AEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       225 ~~f~----------------------~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      ....                      .+++.+|||++-  |+.+++++-|.+.|+
T Consensus       322 ~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al~  374 (378)
T TIGR01329       322 SVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI--EDVDDLISDLDIAFV  374 (378)
T ss_pred             CCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHH
Confidence            4321                      125789999987  334445555554443

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.79  E-value=6.5e-18  Score=147.91  Aligned_cols=208  Identities=12%  Similarity=0.050  Sum_probs=143.4

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhHH---------HhhcCCCcEEEeeccc--cCCCC--CC--CCCCCCCeEEE
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMNK---------AVLKGPYAKSIYDHAY--FWPHF--AP--IPAPADEELMI   87 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~---------~la~~~~~~vi~De~y--~~~~~--~~--~~~~~~~~i~~   87 (259)
                      .|++.|++.+.+++++|++++|+||+|.+++         ++|+++|+++|+||+|  ++...  ..  ..+... .+. 
T Consensus       175 ~d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~-D~~-  252 (401)
T PRK00854        175 GDAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEA-DVT-  252 (401)
T ss_pred             CCHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCC-CEE-
Confidence            5788899999888999999999999998872         7899999999999999  32111  00  111111 222 


Q ss_pred             eccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHH
Q 024997           88 FTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKI  167 (259)
Q Consensus        88 ~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
                       .+||.++...+|+||++++ +++++.+.......+++.+++.|+++.+.|+...   .    ....+.++++.+.+.+.
T Consensus       253 -~~~K~l~gg~~~ig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~---~----~~~~~~~~~~~~~l~~~  323 (401)
T PRK00854        253 -LIGKALSGGFYPVSAVLSN-SEVLGVLKPGQHGSTFGGNPLACAVARAALKVLT---E----EGMIENAAEMGAYFLEG  323 (401)
T ss_pred             -EecccccCCccCeEEEEEc-HHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHH---H----cCHHHHHHHHHHHHHHH
Confidence             2479997444799999999 6999888655555567789999999999998531   1    12467788888888888


Q ss_pred             HHhcCCCccccccccccccceeeCCCCCeeEEEecCC-CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhh
Q 024997          168 ISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDD  244 (259)
Q Consensus       168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~  244 (259)
                      |+++...           ......+.+.++.+.-... .+...+.+.|.++||.+.+     .+.+++|+++.  .++++
T Consensus       324 L~~~~~~-----------~~~~~~g~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~~-----~~~~~lR~~p~~~~t~e~  387 (401)
T PRK00854        324 LRSIRSN-----------IVREVRGRGLMLAVELEPEAGGARQYCEALKERGLLAKD-----THDHTIRLAPPLVITREQ  387 (401)
T ss_pred             HHhhccC-----------ceEEEeccceEEEEEEecCchhHHHHHHHHHHCCeEEec-----CCCCEEEEeCCcccCHHH
Confidence            8865420           0122244455554432222 1233344444467999865     23479999963  49999


Q ss_pred             HHHHHHHHHHHhh
Q 024997          245 FDLLLHRLDELIS  257 (259)
Q Consensus       245 ~~~~~~~l~~~l~  257 (259)
                      +++++++|++++.
T Consensus       388 i~~~i~~l~~~l~  400 (401)
T PRK00854        388 VDWALEQIAKVLA  400 (401)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998874

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.79  E-value=1.2e-17  Score=144.65  Aligned_cols=186  Identities=10%  Similarity=0.021  Sum_probs=130.8

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEeccccccC-C
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTG-H   96 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g-~   96 (259)
                      .|++++++.+++++++|++++|+||||.++     .++|+++|+++|+|++|..+.. ..+-..+-+++++|++|.++ .
T Consensus       126 ~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~-~~pl~~GaDivv~S~tK~l~G~  204 (388)
T PRK08861        126 SDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVL-QKPLELGADFVIHSTTKYINGH  204 (388)
T ss_pred             CCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccc-CCCcccCCCEEEeecceeccCC
Confidence            467889888888999999999999999998     3889999999999999932111 11112245799999999986 4


Q ss_pred             CcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 024997           97 AGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSL  176 (259)
Q Consensus        97 ~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  176 (259)
                      .+++.|++++.++++.+.++......+...++...+.+.+.+         +.+..++++..++...+.+.|+..+.+..
T Consensus       205 ~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl---------~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~  275 (388)
T PRK08861        205 SDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGI---------RTLGARMRVHEESAQQILAYLQTQSLVGT  275 (388)
T ss_pred             CcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcC---------CCHHHHHHHHHHHHHHHHHHHHhCCCeeE
Confidence            568899998865688888887777777778887666544444         46777899999999999999999987654


Q ss_pred             cccccccccc----ceeeCCCCCeeEEEecCCCchHHHHHHHHHcCe
Q 024997          177 QEIAPQYCTY----FKKIRPPSPAYAWVKCEREEDKDCYGILKAAKI  219 (259)
Q Consensus       177 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi  219 (259)
                      ...|....+.    ++......|-.+.+.++. +.+.+.++++.-.+
T Consensus       276 V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~-~~~~~~~f~~~l~l  321 (388)
T PRK08861        276 IYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAG-SFEQLKVFVKALAL  321 (388)
T ss_pred             EECCCCCCCchHHHHHHhCCCCCceEEEEeCC-CHHHHHHHHhcCCc
Confidence            4444322211    222122234455666753 34555555554443

>PLN00144 acetylornithine transaminase

Probab=99.79  E-value=6.3e-18  Score=146.71  Aligned_cols=207  Identities=13%  Similarity=0.093  Sum_probs=137.8

Q ss_pred             ChhhhcccCC-CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCC--CC--CCC-CCCCeEE
Q 024997           24 EANLWGNASS-DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHF--AP--IPA-PADEELM   86 (259)
Q Consensus        24 d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~--~~--~~~-~~~~~i~   86 (259)
                      |++.|++.+. .+++++++..-+||.|...         .++|+++|+++|+||+|  |+...  ..  ..+ .+|    
T Consensus       155 d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD----  230 (382)
T PLN00144        155 NLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD----  230 (382)
T ss_pred             CHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC----
Confidence            6778888774 3566645444478844433         28999999999999998  42211  11  112 233    


Q ss_pred             EeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 024997           87 IFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSK  166 (259)
Q Consensus        87 ~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (259)
                      +.||||.++ +|+|+||++++ +++.+.+.......+++.+++.+.++.+.++...++   +.    .+.+++..+.+.+
T Consensus       231 i~t~sK~l~-~G~pig~v~~~-~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~---~~----~~~~~~~g~~l~~  301 (382)
T PLN00144        231 IMTLAKPLA-GGLPIGAVLVT-EKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKP---GF----LASVAKKGEYLRE  301 (382)
T ss_pred             EEEeccccc-CCcceEEEEEc-HHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhc---hH----HHHHHHHHHHHHH
Confidence            899999997 89999999999 799998876556677889999999999777654222   22    3333344444444


Q ss_pred             HHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--Chhh
Q 024997          167 IISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDD  244 (259)
Q Consensus       167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~  244 (259)
                      .|+++.    ...+.     +..+.. .|+++|+.+... .+.+...+.++||.+.|+.   . .+.+|++++.  ++++
T Consensus       302 ~l~~~~----~~~~~-----~~~vrg-~G~~~~l~l~~~-~~~~~~~~~~~Gv~i~~~~---~-~~~lrl~p~~~~~~~~  366 (382)
T PLN00144        302 LLRRKL----GGNPH-----VKEVRG-VGLLVGIQLDVP-AGPLVDACRDSGLLVLTAG---K-GDVVRLVPPLVISEAE  366 (382)
T ss_pred             HHHHHH----hhCCC-----ceeeec-CceEEEEEecCc-cHHHHHHHHHCCeEEeecC---C-CCEEEEeCCCccCHHH
Confidence            443321    00000     212223 789999988432 3444455567999998862   1 3789999864  8899


Q ss_pred             HHHHHHHHHHHhhh
Q 024997          245 FDLLLHRLDELISK  258 (259)
Q Consensus       245 ~~~~~~~l~~~l~~  258 (259)
                      +++++++|.+.+.+
T Consensus       367 i~~~~~~l~~~l~~  380 (382)
T PLN00144        367 LEQAVEILADCLPA  380 (382)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998864

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.79  E-value=2.9e-18  Score=150.66  Aligned_cols=208  Identities=15%  Similarity=0.099  Sum_probs=138.4

Q ss_pred             ChhhhcccCCC---CceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEE
Q 024997           24 EANLWGNASSD---THLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMI   87 (259)
Q Consensus        24 d~~~l~~~~~~---~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~   87 (259)
                      |++.|++.+.+   ++++ ++++| +|++|.++         .++|+++|+++|+||+|  |+....... ...+....+
T Consensus       177 d~~~l~~~l~~~~~~~~~-vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~  255 (413)
T cd00610         177 DLEALEEALEEHPEEVAA-VIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDI  255 (413)
T ss_pred             HHHHHHHHHhcCCCCEEE-EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCe
Confidence            77788888754   4556 55555 56668765         27899999999999999  422111111 111112235


Q ss_pred             eccccccCCCcceEEEEEecCHHHHHHH--HHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 024997           88 FTISKLTGHAGSRFGWAVIKDEAVYQRM--SAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLS  165 (259)
Q Consensus        88 ~S~SK~~g~~G~R~G~i~~~~~~~~~~~--~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (259)
                      .|+||.++ .|+|+||++++ +++++.+  .......+.+.+++.|.++.+.++...+       .+..++++++.+.+.
T Consensus       256 ~t~sK~l~-~g~~~g~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~-------~~~~~~~~~~~~~l~  326 (413)
T cd00610         256 VTLGKGLG-GGLPLGAVLGR-EEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEE-------EGLLENAAELGEYLR  326 (413)
T ss_pred             EEEccccc-CccccEEEEEc-HHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHH
Confidence            69999998 58999999998 7999986  3334445678889999988888875311       234667777777787


Q ss_pred             HHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---------chHHHHHHHHHcCeeeecCCcccCCCCeEEE
Q 024997          166 KIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---------EDKDCYGILKAAKIIGREGKKFRAEARFVRL  236 (259)
Q Consensus       166 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ri  236 (259)
                      +.|+.+...     .+    .... ....|.++++.+...         ....+.+.|.++||.+.|+.     ++.+|+
T Consensus       327 ~~l~~~~~~-----~~----~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~-----~~~lR~  391 (413)
T cd00610         327 ERLRELAEK-----HP----LVGD-VRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG-----GNVIRL  391 (413)
T ss_pred             HHHHHHHhh-----CC----cEEE-eecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC-----CCEEEE
Confidence            777765320     00    0111 223456667766432         23445555667899999964     478999


Q ss_pred             Eeec--ChhhHHHHHHHHHHHh
Q 024997          237 SLLK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       237 s~~~--~~~~~~~~~~~l~~~l  256 (259)
                      +++.  +++++++++++|.+++
T Consensus       392 ~~~~~~t~~~i~~~~~~l~~~l  413 (413)
T cd00610         392 LPPLIITEEEIDEGLDALDEAL  413 (413)
T ss_pred             ECCCcCCHHHHHHHHHHHHHhC
Confidence            8754  8899999999998764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.78  E-value=1.1e-17  Score=145.48  Aligned_cols=232  Identities=13%  Similarity=0.064  Sum_probs=145.1

Q ss_pred             hhhccCccccccc-ChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCe
Q 024997           11 TDYFESVDYKFEG-EANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEE   84 (259)
Q Consensus        11 ~~~~g~~~~~~~~-d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~   84 (259)
                      +...|.++..+.+ |++++++.+++++++|++++|+||+|.+.     .++|+++|+++|+|++|-.+ ...-+-.....
T Consensus       119 ~~~~G~~~~~vd~~d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~-~~~~~~~~g~D  197 (391)
T TIGR01328       119 LTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATP-MLTNPVALGVD  197 (391)
T ss_pred             HhcCCeEEEEECCCCHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchh-ccCCchhcCCC
Confidence            3445655543333 57788888888899999999999999997     38899999999999998211 11111122446


Q ss_pred             EEEeccccccCCCcceE-EEEEecCHHHHHHHHHhhh--hhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 024997           85 LMIFTISKLTGHAGSRF-GWAVIKDEAVYQRMSAYIS--LNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRW  161 (259)
Q Consensus        85 i~~~S~SK~~g~~G~R~-G~i~~~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  161 (259)
                      ++++|+||.+|.+|.++ |+++++ +++++.++....  ..+...++...+.+...++         .+..++++..++.
T Consensus       198 ivv~S~sK~lgg~g~~~gG~v~~~-~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~---------tl~~r~~~~~~na  267 (391)
T TIGR01328       198 VVVHSATKYIGGHGDVVAGLICGK-AELLQQIRMVGIKDMTGSVISPFDAWLILRGLK---------TLNIRMKRHSENA  267 (391)
T ss_pred             EEEccccccccCCCCceEEEEEcC-HHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcC---------cHHHHHHHHHHHH
Confidence            89999999999888775 677766 798888875432  2233455554444443333         4556788899999


Q ss_pred             HHHHHHHHhcCCCcccccccccccc----ceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCccc---------
Q 024997          162 ENLSKIISLSNRFSLQEIAPQYCTY----FKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFR---------  228 (259)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~---------  228 (259)
                      ..+.+.|++.+.+.....|+...+.    ++......|-.+.++++. +.+.+.+++++-.+.. .+.++|         
T Consensus       268 ~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~-~~~~~~~f~~~l~~~~-~~~s~G~~~sl~~~~  345 (391)
T TIGR01328       268 MKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKG-GFAGAKKLLNNLKLIR-LAVSLGDAETLIQHP  345 (391)
T ss_pred             HHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCC-CHHHHHHHHHhCCcce-EecCCCCCcccCcCC
Confidence            9999999999877654444322210    111112223345566653 3444555665444421 121111         


Q ss_pred             -----------------CCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          229 -----------------AEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       229 -----------------~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                                       .+++.+|||++-  |+.+++++-|.+.|+
T Consensus       346 ~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al~  389 (391)
T TIGR01328       346 ASMTHAVVPKEEREAAGITDGMIRLSVGL--EDADDLIADLKQALD  389 (391)
T ss_pred             CccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHHHh
Confidence                             124689999987  334555555555543

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=5.9e-17  Score=140.63  Aligned_cols=231  Identities=16%  Similarity=0.108  Sum_probs=167.5

Q ss_pred             chhhhhhccCcc------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccccCCCCC
Q 024997            7 YQEQTDYFESVD------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYFWPHFA   75 (259)
Q Consensus         7 ~~~~~~~~g~~~------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~~~~~~   75 (259)
                      +...++..|.++      ....++.+.++..++++|+++.++..+|.||.+.+     ++|+++|+++++|.++..++..
T Consensus       128 w~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~  207 (405)
T COG0520         128 WQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLP  207 (405)
T ss_pred             HHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccC
Confidence            344444456544      23467788899988999999999999999999984     8999999999999988433332


Q ss_pred             CCCCCCCCeEEEecccc-ccCCCcceEEEEEecCHHHHHHHHHh---------------------hhhhcCCCCHHHHHH
Q 024997           76 PIPAPADEELMIFTISK-LTGHAGSRFGWAVIKDEAVYQRMSAY---------------------ISLNTMGVSRECQLR  133 (259)
Q Consensus        76 ~~~~~~~~~i~~~S~SK-~~g~~G~R~G~i~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~q~~  133 (259)
                      .-.+..+.++++.|..| .+|..|  +|++++. +++.+.+...                     ......+.+.+.+..
T Consensus       208 idv~~l~~Df~afsgHKwl~gP~G--iGvLy~r-~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i  284 (405)
T COG0520         208 IDVQELGCDFLAFSGHKWLLGPTG--IGVLYVR-KELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAI  284 (405)
T ss_pred             CCchhcCCCEEEEcccccccCCCc--eEEEEEc-hHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHH
Confidence            22256788999999999 788778  9999999 6999887331                     112234455555544


Q ss_pred             H-HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCC---CCCeeEEEecCCCchHH
Q 024997          134 A-FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP---PSPAYAWVKCEREEDKD  209 (259)
Q Consensus       134 ~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  209 (259)
                      + .++++...+    --+.+..++.++..+++.+.|++++++.+             +.+   ..+..+.+.++..+...
T Consensus       285 ~l~aAl~~~~~----ig~~~i~~~e~~L~~~~~~~L~~~~~v~i-------------~g~~~~~r~~~vsF~v~~~~~~d  347 (405)
T COG0520         285 GLAAALDYLLE----IGMEAIEAHERELTEYLLEGLSELPGVEI-------------YGPPDADRGGIVSFNVKGIHPHD  347 (405)
T ss_pred             hHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHhcCCCeEE-------------ecCCcccCceEEEEEeCCCCHHH
Confidence            3 333332211    12566778888888889999998876333             332   24555666677767788


Q ss_pred             HHHHHHHcCeeeecCCcccCC-------CCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          210 CYGILKAAKIIGREGKKFRAE-------ARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       210 ~~~ll~~~gi~~~~g~~f~~~-------~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      +...|.++||.++.|.++..+       ...+|+|++.  +.++++.+++.|+++.+
T Consensus       348 v~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         348 VATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             HHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence            888888899999999888731       3459999987  99999999999998753

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.78  E-value=5.5e-17  Score=140.46  Aligned_cols=242  Identities=11%  Similarity=0.123  Sum_probs=152.4

Q ss_pred             CCCcc-cchhhh---hhccCcccccc-cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc
Q 024997            1 MPFYP-LYQEQT---DYFESVDYKFE-GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~-~~~~~~---~~~g~~~~~~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~   70 (259)
                      +|.|+ .|....   ...|.++..+. .|++++++.+++++++|++++|+||||.+.     .++|+++|+++|+|++|.
T Consensus        95 ~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~  174 (377)
T PRK07671         95 DDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFM  174 (377)
T ss_pred             CCccchHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCC
Confidence            36666 443333   33466654333 478889999988999999999999999987     388999999999999983


Q ss_pred             CCCCCCCCCCCCCeEEEeccccccCCC-cceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcch
Q 024997           71 WPHFAPIPAPADEELMIFTISKLTGHA-GSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNI  149 (259)
Q Consensus        71 ~~~~~~~~~~~~~~i~~~S~SK~~g~~-G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  149 (259)
                      .+... -+-....++++.|+||.++.+ +.-.|++++.++++.+.+...+.......++...+.+.+         ....
T Consensus       175 ~~~~~-~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~---------~l~t  244 (377)
T PRK07671        175 TPYWQ-SPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLR---------GLKT  244 (377)
T ss_pred             ccccC-ChhhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHc---------CcCh
Confidence            11111 111224479999999999743 355677777657888888877776556666654443332         3346


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc----cceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeee---e
Q 024997          150 FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCT----YFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIG---R  222 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~---~  222 (259)
                      +..++++..++...+.+.|++.+.+.....+.....    .++......|-.+.+++.  +.+.+.+++++-.+..   .
T Consensus       245 l~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~--~~~~~~~f~~~l~l~~~~~s  322 (377)
T PRK07671        245 LGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVG--SEETANKVLERLQYFTLAES  322 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeC--CHHHHHHHHHhCCcceEccC
Confidence            777899999999999999999887654444431111    111111122334455663  3455556665554421   1


Q ss_pred             cCC------------c----------ccCCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          223 EGK------------K----------FRAEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       223 ~g~------------~----------f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      -|.            +          .+.+++.+|||++-  |+.+.+++-|.+.|
T Consensus       323 ~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al  376 (377)
T PRK07671        323 LGAVESLISIPSQMTHASIPADRRKELGITDGLIRISVGI--EDGEDLIEDLAQAL  376 (377)
T ss_pred             CCCCCeEeECCCccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHh
Confidence            111            0          11125689999987  33444555555443

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.77  E-value=5.4e-17  Score=141.27  Aligned_cols=167  Identities=10%  Similarity=0.074  Sum_probs=122.4

Q ss_pred             CCCcccchh----hhhhccCccccccc-ChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc
Q 024997            1 MPFYPLYQE----QTDYFESVDYKFEG-EANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~~~~~----~~~~~g~~~~~~~~-d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~   70 (259)
                      +|+|+.+..    .+...|.++..+.. +.+.+++.+++++++|++++|+||+|.+.     .++|+++|+++|+|++|-
T Consensus       111 ~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a  190 (394)
T PRK07050        111 DNAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYS  190 (394)
T ss_pred             cCCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcc
Confidence            477887664    34445666544432 34678888888999999999999999887     388999999999999982


Q ss_pred             CCC-CCCCCCCCCCeEEEeccccccC-CCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcc
Q 024997           71 WPH-FAPIPAPADEELMIFTISKLTG-HAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNN  148 (259)
Q Consensus        71 ~~~-~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  148 (259)
                      .+. ..++  ..+.++++.|+||.++ ..|++.|++++.++++.++++..+...+.+.++.....+.+.+         +
T Consensus       191 ~~~~~~~l--~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l---------~  259 (394)
T PRK07050        191 AGLAFKPF--EHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGL---------P  259 (394)
T ss_pred             cccccCHH--HcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCC---------C
Confidence            111 1111  2245799999999995 5667899988866789998887777667777776655443333         3


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 024997          149 IFEFGYNTMKKRWENLSKIISLSNRFSLQE  178 (259)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  178 (259)
                      .+..+.++..++...+.+.|++.+.+....
T Consensus       260 tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~  289 (394)
T PRK07050        260 SLQVRLAAHDRSALEVAEWLKARPEIATVL  289 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence            456678888899999999999988765443

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.77  E-value=2.5e-17  Score=140.92  Aligned_cols=220  Identities=12%  Similarity=-0.050  Sum_probs=141.5

Q ss_pred             CCcccchh---hhhhccCccc-----ccccChhhhcccCCC-------CceEEEEcCCCCCChhhH--------HHhhcC
Q 024997            2 PFYPLYQE---QTDYFESVDY-----KFEGEANLWGNASSD-------THLVEFVTAPNNPDGQMN--------KAVLKG   58 (259)
Q Consensus         2 P~y~~~~~---~~~~~g~~~~-----~~~~d~~~l~~~~~~-------~~~~i~i~~p~NPtG~~~--------~~la~~   58 (259)
                      |+|+.+..   ..+..|.+..     .+.+|+++|++.+++       +++++++++|||| |.++        .++|++
T Consensus        79 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~  157 (338)
T cd06502          79 TAHIYTDEAGAPEFLSGVKLLPVPGENGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKE  157 (338)
T ss_pred             CcceeeecCCcHHHHcCceEEeecCCCCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHH
Confidence            55554322   2344566542     246888999988853       6899999999998 5442        378889


Q ss_pred             CCcEEEeecccc-C---CCCCCCCC-CCCCeEEEeccccccCCCcceEEE-EEecCHHHHHHHHHhhhhh--cCCCCHHH
Q 024997           59 PYAKSIYDHAYF-W---PHFAPIPA-PADEELMIFTISKLTGHAGSRFGW-AVIKDEAVYQRMSAYISLN--TMGVSREC  130 (259)
Q Consensus        59 ~~~~vi~De~y~-~---~~~~~~~~-~~~~~i~~~S~SK~~g~~G~R~G~-i~~~~~~~~~~~~~~~~~~--~~~~~~~~  130 (259)
                      +|+++|+||+|. +   .....+.. ..+..+++.|+||.+|++|   |+ ++++ +++++.+.......  +...+++.
T Consensus       158 ~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~---g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  233 (338)
T cd06502         158 NGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPV---GAVVVGN-RDFIARARRRRKQAGGGMRQSGFL  233 (338)
T ss_pred             cCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCcc---ceEEECC-HHHHHHHHHHHHHhCCChhhHHHH
Confidence            999999999982 1   11112111 1233467889999999887   55 4556 79999888765432  33456677


Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHH
Q 024997          131 QLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDC  210 (259)
Q Consensus       131 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (259)
                      +.++...++.      ..+ .+..+++.++++++.+.|++++.              ...++. +.++.+..+.. ....
T Consensus       234 ~~a~~~~L~~------~~~-~~~~~~~~~~~~~l~~~L~~~~~--------------~~~~~~-~~~~~v~~~~~-~~~~  290 (338)
T cd06502         234 AAAGLAALEN------DLW-LRRLRHDHEMARRLAEALEELGG--------------LESEVQ-TNIVLLDPVEA-NAVF  290 (338)
T ss_pred             HHHHHHHhcC------chH-HHHHHHHHHHHHHHHHHHHhcCC--------------Cccccc-CCeEEEecCCc-cHHH
Confidence            7777777762      223 34456777888899999987652              122333 34445554422 2233


Q ss_pred             HHHHH------HcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHH
Q 024997          211 YGILK------AAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDE  254 (259)
Q Consensus       211 ~~ll~------~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~  254 (259)
                      .++++      ++|+.+.+..     .+++|+++..  ++++++++++++++
T Consensus       291 ~~l~~~l~~~~~~gi~~~~~~-----~~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         291 VELSKEAIERRGEGVLFYAWG-----EGGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             HHHHHHHHHhhhCCEEEEecC-----CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence            33332      4798887731     2789999964  88999999998865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.77  E-value=3.9e-17  Score=140.64  Aligned_cols=210  Identities=13%  Similarity=0.147  Sum_probs=140.3

Q ss_pred             cccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEeccccccC
Q 024997           21 FEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTG   95 (259)
Q Consensus        21 ~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g   95 (259)
                      |..|++++++.+++++++|++++|+||||.+.     .++|+++|+++|+|++|+.+.. .-+-.....+++.|+||.++
T Consensus       122 ~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~-~~pl~~gaDivv~S~tK~l~  200 (364)
T PRK07269        122 YANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIY-QRPIELGADIVLHSATKYLS  200 (364)
T ss_pred             ecCCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc-CCchhhCCcEEEecCceecc
Confidence            56788999999999999999999999999886     3889999999999999842211 11112234699999999996


Q ss_pred             CCc-ceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024997           96 HAG-SRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRF  174 (259)
Q Consensus        96 ~~G-~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  174 (259)
                      .+| .=.|+++++++++.+.++......+.+.+++..+.+...|+         .+..++++.+++...+.+.|++.+.+
T Consensus       201 g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~---------tL~~r~~~~~~na~~~a~~L~~~p~v  271 (364)
T PRK07269        201 GHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLK---------TLSLRMERSTANAQEVVAFLKKSPAV  271 (364)
T ss_pred             CCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCC---------cHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            433 34588888667888888766655556777876666555554         57778889999999999999987743


Q ss_pred             ccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHc-------------CeeeecCCcc------------cC
Q 024997          175 SLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAA-------------KIIGREGKKF------------RA  229 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------gi~~~~g~~f------------~~  229 (259)
                      ..           ..+++.+|++.+. +..  .+...++++.-             .+.+.|+..+            +.
T Consensus       272 ~~-----------v~ypg~gg~~sf~-~~~--~~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi  337 (364)
T PRK07269        272 KE-----------VLYTGKGGMISFK-VAD--ETRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGL  337 (364)
T ss_pred             cE-----------EeCCCcCcEEEEE-ECC--HHHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccCCHHHHHhcCC
Confidence            21           1224556655444 332  22233333222             2233343221            12


Q ss_pred             CCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          230 EARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       230 ~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      .++.+|||++-  |+.+++++-|.+.+
T Consensus       338 ~~~liRlsvGl--E~~~dli~dl~~al  362 (364)
T PRK07269        338 TDDLLRLSIGI--EDARDLIADLKQAL  362 (364)
T ss_pred             CCCeEEEEecc--CCHHHHHHHHHHHh
Confidence            35789999987  34555555555554

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.77  E-value=1.3e-16  Score=138.19  Aligned_cols=207  Identities=11%  Similarity=0.084  Sum_probs=140.1

Q ss_pred             CCCcccchhhh----hhccCccccccc-ChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeecccc
Q 024997            1 MPFYPLYQEQT----DYFESVDYKFEG-EANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~~~~~~~----~~~g~~~~~~~~-d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~   70 (259)
                      +|.|+++...+    ...|.+...+.. +.+.+++.+++++++|++++|+||||.+..     ++|+++|+++|+|++| 
T Consensus       107 ~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~-  185 (394)
T PRK09028        107 DSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTW-  185 (394)
T ss_pred             CCCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCc-
Confidence            46776665433    224544433433 346788888889999999999999999883     8899999999999999 


Q ss_pred             CCCCCCCCCCCCCeEEEecccccc-CCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcch
Q 024997           71 WPHFAPIPAPADEELMIFTISKLT-GHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNI  149 (259)
Q Consensus        71 ~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  149 (259)
                      ......-+-..+.++++.|.+|.+ |..++..|+++.+ +++.+.+.......+.++++...+.+.+.+         +.
T Consensus       186 a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~-~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl---------~T  255 (394)
T PRK09028        186 ASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATAN-EKHWDQLREHSYLMGQCTSPDDVYLAMRGL---------RT  255 (394)
T ss_pred             cccccCCccccCceEEEEeCCeEecCCCCEEEEEEECC-HHHHHHHHHHHHhcCCCCCHHHHHHHHccc---------Cc
Confidence            222111122445689999999999 6778888988777 688888877666667778887666554444         46


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc----cceeeCCCCCeeEEEecCCCchHHHHHHHHHcC
Q 024997          150 FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCT----YFKKIRPPSPAYAWVKCEREEDKDCYGILKAAK  218 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g  218 (259)
                      +..++++..++...+.+.|++.+.+.....|.....    .++......|-.+.+.++..+.+.+.+++++-.
T Consensus       256 L~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~f~~~l~  328 (394)
T PRK09028        256 LGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALVEGMQ  328 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCC
Confidence            788899999999999999999987654444432111    011111122334555565323445555665444

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.76  E-value=4.5e-17  Score=144.52  Aligned_cols=232  Identities=13%  Similarity=0.154  Sum_probs=151.9

Q ss_pred             CCCcccchhhhhh----ccCccccc-----ccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEe-
Q 024997            1 MPFYPLYQEQTDY----FESVDYKF-----EGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIY-   65 (259)
Q Consensus         1 ~P~y~~~~~~~~~----~g~~~~~~-----~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~-   65 (259)
                      +|.|+.|...++.    .|.++..+     .+|+++|++.++++++++++++| ||||.+.     .++|+++|+++++ 
T Consensus       161 ~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~  239 (447)
T PRK00451        161 GAVHPEYREVLKTYLKGQGIEVVEVPYEDGVTDLEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVG  239 (447)
T ss_pred             CccCHHHHHHHHHHHHhCCcEEEEecCCCCCCCHHHHHHhcCCCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEE
Confidence            4778888887765    35554211     56788899999889999999999 9999997     3899999999988 


Q ss_pred             -eccccCCCCCCCCCCCCCeEEEe---ccccccCCCcceEEEEEecCHHHHHHHH-------------------------
Q 024997           66 -DHAYFWPHFAPIPAPADEELMIF---TISKLTGHAGSRFGWAVIKDEAVYQRMS-------------------------  116 (259)
Q Consensus        66 -De~y~~~~~~~~~~~~~~~i~~~---S~SK~~g~~G~R~G~i~~~~~~~~~~~~-------------------------  116 (259)
                       |.+..+  ....+...+.+++++   +|||.+.+.|+|+||++++ +++++.+.                         
T Consensus       240 ~d~~~~g--~~~~~~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  316 (447)
T PRK00451        240 VDPVSLG--LLKPPGEYGADIVVGEGQPLGIPLSFGGPYLGFFATR-KKLVRQMPGRLVGETVDADGKRGFVLTLQAREQ  316 (447)
T ss_pred             cChHHhc--cCCCcccCCCCEEEECCCcCCCCCCCCCCCchHHHhh-HHHHhhCCCCEeeeecccCCCeeeEeecccccc
Confidence             543221  111123445566665   7788887889999999998 68888741                         


Q ss_pred             ---HhhhhhcCCCCHHHH-HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCC
Q 024997          117 ---AYISLNTMGVSRECQ-LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP  192 (259)
Q Consensus       117 ---~~~~~~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  192 (259)
                         ........+.+...| .++...+...    .+..+++..+++.++++.+.+.|+++++             +...  
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~aaa~~l~~~----~~~g~~~~~~~~~~~~~~l~~~L~~~~g-------------~~~~--  377 (447)
T PRK00451        317 HIRREKATSNICTNQALNALAAAIYMSLL----GPEGLRELAEQNHQKAHYLAERLAEIGG-------------VELF--  377 (447)
T ss_pred             ccccccccccccccHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHHHhhcCC-------------EEec--
Confidence               111112223333333 2333333321    3345778889999999999999998764             2222  


Q ss_pred             CCCeeEE--EecCCCchHHHHHHHHHcCee-eecCCcccC-CCCeEEEEee--cChhhHHHHHHHHHHHh
Q 024997          193 PSPAYAW--VKCEREEDKDCYGILKAAKII-GREGKKFRA-EARFVRLSLL--KSQDDFDLLLHRLDELI  256 (259)
Q Consensus       193 ~~~~~~~--~~~~~~~~~~~~~ll~~~gi~-~~~g~~f~~-~~~~~Ris~~--~~~~~~~~~~~~l~~~l  256 (259)
                      .+++|.+  ++++....++...++ ++||. ..++..+++ -.+++|+|+.  .++++++++++.|++++
T Consensus       378 ~~~~~~~~~v~~~~~~~~~~~~L~-~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        378 DGPFFNEFVVRLPKPAEEVNEALL-EKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             CCCeEEEEEEecCCCHHHHHHHHH-hcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            3344433  555322345555555 56665 355666653 2478999996  38899999999998875

>PRK05939 hypothetical protein; Provisional

Probab=99.76  E-value=2.3e-16  Score=137.29  Aligned_cols=240  Identities=13%  Similarity=0.125  Sum_probs=149.1

Q ss_pred             CCcccchh---hhhhccCcccccc-cChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccccCC
Q 024997            2 PFYPLYQE---QTDYFESVDYKFE-GEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYFWP   72 (259)
Q Consensus         2 P~y~~~~~---~~~~~g~~~~~~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~~~   72 (259)
                      |.|+.+..   .+...|.++..+. .|+++|++.+++++++|++++|+||||.+..     ++|+++|+++|+|++|-.+
T Consensus        94 ~~y~~t~~~~~~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~  173 (397)
T PRK05939         94 FLFGNTNSLFGTLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSP  173 (397)
T ss_pred             CccccHHHHHHHHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccc
Confidence            45665443   2344566554333 3678899999999999999999999999873     8899999999999988312


Q ss_pred             CCCCC-CCCCCCeEEEeccccccCCCcceEEEEEecCHH--------HH-------------HHHH-HhhhhhcCCCCHH
Q 024997           73 HFAPI-PAPADEELMIFTISKLTGHAGSRFGWAVIKDEA--------VY-------------QRMS-AYISLNTMGVSRE  129 (259)
Q Consensus        73 ~~~~~-~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~--------~~-------------~~~~-~~~~~~~~~~~~~  129 (259)
                      .  .+ +...+.++++.|+||.++..|.++|++++++..        +.             ..++ ..........++.
T Consensus       174 ~--~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~  251 (397)
T PRK05939        174 W--LFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATLSSE  251 (397)
T ss_pred             c--ccCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCCCHH
Confidence            1  11 123357899999999999899999998875211        11             1111 1122334455665


Q ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc---c-ceeeCCCCCeeEEEecCCC
Q 024997          130 CQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCT---Y-FKKIRPPSPAYAWVKCERE  205 (259)
Q Consensus       130 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~  205 (259)
                      ..+.+.+         .-+.+..+.++..++...+.+.|++.+.+.....|.....   . ++......|..+.+.++. 
T Consensus       252 ~a~l~~r---------gl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~-  321 (397)
T PRK05939        252 AAHRIAI---------GAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELAD-  321 (397)
T ss_pred             HHHHHHc---------CcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCC-
Confidence            4443322         3446777888899999999999999997654444431111   0 111122335556666663 


Q ss_pred             chHHHHHHHHHcCeeeecCCccc--------------------------CCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          206 EDKDCYGILKAAKIIGREGKKFR--------------------------AEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       206 ~~~~~~~ll~~~gi~~~~g~~f~--------------------------~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                       .+...++++.-.+.. .+.+++                          .+++.+|||++-  |+.+++++-|.+.|+
T Consensus       322 -~~~~~~f~~~l~l~~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svGl--Ed~~dLi~dl~~Al~  395 (397)
T PRK05939        322 -GIDCFDFLNRLKLVI-KATHLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVGI--EDEADLIADFEQALD  395 (397)
T ss_pred             -HHHHHHHHHhCCcce-EccCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHHHHHh
Confidence             234455555544421 111111                          125689999987  345556666655554

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.76  E-value=5.7e-17  Score=141.79  Aligned_cols=227  Identities=11%  Similarity=0.022  Sum_probs=147.6

Q ss_pred             CCCcccchhhhhhcc----Cccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhH------HHhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFE----SVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN------KAVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g----~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~------~~la~~~~~~vi   64 (259)
                      +|.|+.+...+...+    .++.      .+.+|+++|++.++++++++++++|+ |||.+.      .++|+++|+++|
T Consensus       115 ~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~li  193 (398)
T cd00613         115 DSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVY  193 (398)
T ss_pred             CccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCCeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEE
Confidence            478899988888776    4431      23567888999998889998999885 999886      289999999999


Q ss_pred             eeccccCCCCCCCCCCCCCeEEEeccccccCCC----cceEEEEEecCHHHHHHHHHh----------------------
Q 024997           65 YDHAYFWPHFAPIPAPADEELMIFTISKLTGHA----GSRFGWAVIKDEAVYQRMSAY----------------------  118 (259)
Q Consensus        65 ~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g~~----G~R~G~i~~~~~~~~~~~~~~----------------------  118 (259)
                      +|+++.......-.+..+.+++++|++|.+ .+    |+|+||++.+ +++++.+...                      
T Consensus       194 vD~~~~~~~~~~~~~~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (398)
T cd00613         194 VDGDNLNLTGLKPPGEYGADIVVGNLQKTG-VPHGGGGPGAGFFAVK-KELVRFLPGRLVGVTKDAEGNRAFRLALQTRE  271 (398)
T ss_pred             EEeccccccCCCChHHcCCCEEEeeccccC-CCCCCCCCceeEEEEh-hhhHhhCCCCeeccccccCCCcceEEecccch
Confidence            999762111111113446789999999998 45    7999999998 5887764211                      


Q ss_pred             -------hhh-hcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceee
Q 024997          119 -------ISL-NTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKI  190 (259)
Q Consensus       119 -------~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  190 (259)
                             ... ...+.+...|.+.. .+...    .+..+++.+++++++.+++.+.|++++...               
T Consensus       272 ~~~r~e~~~~~~~~~~~~~~~~a~~-~l~~~----~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~---------------  331 (398)
T cd00613         272 QHIRREKATSNICTGQALLALMAAM-YIVYL----GPEGLKEIAERAHLNANYLAKRLKEVGGVL---------------  331 (398)
T ss_pred             hhcccccccccceecHHHHHHHHHH-HHHHh----CHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---------------
Confidence                   000 11112223333333 33321    334567778899999999999998865311               


Q ss_pred             CCCCCee--EEEecCC---CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHH
Q 024997          191 RPPSPAY--AWVKCER---EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRL  252 (259)
Q Consensus       191 ~~~~~~~--~~~~~~~---~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l  252 (259)
                      .+.+..+  ++++++.   .+.+.+...|.++||.+....  ....+.+|+|+..  ++++++.+++.|
T Consensus       332 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~~--~~~~~~lRis~~~~~t~edid~~~~~L  398 (398)
T cd00613         332 PFNGPFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTMY--LPVDGTLMIEPTETETKEELDALLEAL  398 (398)
T ss_pred             cCCCCeeEEEEEEcCCcchHHHHHHHHhhhhcCccccccc--cCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence            1122222  4566653   223344444556798764321  1235789999854  899999988764

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.76  E-value=1.8e-16  Score=137.33  Aligned_cols=232  Identities=12%  Similarity=0.072  Sum_probs=150.9

Q ss_pred             CCcccchhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc-
Q 024997            2 PFYPLYQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY-   69 (259)
Q Consensus         2 P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y-   69 (259)
                      +.|+.+...++..|.++.      ++.+|+++|++.+++++++++++.++||||.+.+     ++|+++|+++++|++| 
T Consensus       112 ~~h~s~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~  191 (371)
T PRK13520        112 SAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFG  191 (371)
T ss_pred             cchHHHHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecch
Confidence            456666777776776542      2357889999999877877788889999999983     8899999999999998 


Q ss_pred             -cC----CCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhc--------CCCCHHHHHHHH
Q 024997           70 -FW----PHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNT--------MGVSRECQLRAF  135 (259)
Q Consensus        70 -~~----~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~q~~~~  135 (259)
                       +.    .....+. ...+...+..|..|. +.+|.++|+++..++++++.+........        ...+.....++.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~-~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~  270 (371)
T PRK13520        192 GFVIPFLDDPPNFDFSLPGVDSITIDPHKM-GLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATY  270 (371)
T ss_pred             hHHHHhhcCCCCccccCCCCceEEECCccc-cCccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHH
Confidence             21    1111111 122334556677784 55788999888754678777642111100        001223344455


Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHH
Q 024997          136 KLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILK  215 (259)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  215 (259)
                      .+++..    .+.-+++.+++..++.+.+.+.|++++ +.+            ...+. ..++.++++  +.+.+...|.
T Consensus       271 ~al~~l----~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~------------~~~~~-~~~v~~~~~--~~~~v~~~L~  330 (371)
T PRK13520        271 AVMKYL----GREGYRKVVERCMENTRWLAEELKERG-FEP------------VIEPV-LNIVAFDDP--NPDEVREKLR  330 (371)
T ss_pred             HHHhhh----cHhHHHHHHHHHHHHHHHHHHHHHhCC-CEE------------ecCCC-ceEEEEecC--CHHHHHHHHH
Confidence            555532    223356677888888999999888763 211            22333 335566665  3455555566


Q ss_pred             HcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          216 AAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       216 ~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      ++||.++++.    .++.+|+|+..  ++++++.+++.|++++.+
T Consensus       331 ~~gi~v~~~~----~~~~iRis~~~~~t~edi~~~~~~l~~~~~~  371 (371)
T PRK13520        331 ERGWRVSVTR----CPEALRIVCMPHVTREHIENFLEDLKEVKKR  371 (371)
T ss_pred             HCCceeccCC----CCCEEEEEEECCCCHHHHHHHHHHHHHHhhC
Confidence            7799987632    24689999864  889999999999988753

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.75  E-value=5.5e-17  Score=142.65  Aligned_cols=201  Identities=10%  Similarity=-0.005  Sum_probs=129.0

Q ss_pred             CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCC--CCCCCCCCCCeEEEeccccccCCCcce
Q 024997           34 DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPH--FAPIPAPADEELMIFTISKLTGHAGSR  100 (259)
Q Consensus        34 ~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~--~~~~~~~~~~~i~~~S~SK~~g~~G~R  100 (259)
                      ++..++++..-+.-+|.++         .++|+++|+++|+||+|  |+..  ...+ ...+....+.++||.++ +|+|
T Consensus       196 ~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~-~~~~~~pDi~~lsK~l~-~G~p  273 (420)
T TIGR00700       196 NNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFAC-EHEGPEPDLITTAKSLA-DGLP  273 (420)
T ss_pred             CcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHH-hhcCCCCCEEEeecccc-CCcc
Confidence            3556644443344455554         28999999999999999  4211  1111 11122233567999998 9999


Q ss_pred             EEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 024997          101 FGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIA  180 (259)
Q Consensus       101 ~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  180 (259)
                      +||++++ +++.+.+.......+++.+++.|.++.+.++...+   ++.    .+.+++..+++.+.|+.+..    .++
T Consensus       274 ig~v~~~-~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~---~~~----~~~~~~~g~~l~~~L~~l~~----~~~  341 (420)
T TIGR00700       274 LSGVTGR-AEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIES---EGL----IERARQIGRLVTDRLTTLKA----VDP  341 (420)
T ss_pred             eEEEEec-HHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHh---ccH----HHHHHHHHHHHHHHHHHHHh----hCC
Confidence            9999999 79999887655667788999999999888864321   222    23333333344444443221    011


Q ss_pred             ccccccceeeCCCCCeeEEEecCCC-----ch---HHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHHHHH
Q 024997          181 PQYCTYFKKIRPPSPAYAWVKCERE-----ED---KDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDLLLH  250 (259)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~~~~  250 (259)
                           .+..+.+. |.+.|+.+...     +.   ..+...+.++||.+.|+..|+   +++||+++  .++++++++++
T Consensus       342 -----~~~~vrg~-G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~---~~lRl~p~l~~~~~~l~~~~~  412 (420)
T TIGR00700       342 -----RIGDVRGL-GAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMFG---NIIRFLPPLTIGDELLSEGLD  412 (420)
T ss_pred             -----CEEEeecc-ceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCCC---CEEEEECCCCcCHHHHHHHHH
Confidence                 03334455 66667765211     12   223333457899999987764   79999985  38999999999


Q ss_pred             HHHHHhh
Q 024997          251 RLDELIS  257 (259)
Q Consensus       251 ~l~~~l~  257 (259)
                      +|.+++.
T Consensus       413 ~l~~~l~  419 (420)
T TIGR00700       413 ILCAILA  419 (420)
T ss_pred             HHHHHhh
Confidence            9999875

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.75  E-value=2e-16  Score=138.42  Aligned_cols=232  Identities=10%  Similarity=-0.029  Sum_probs=155.6

Q ss_pred             hhhhhccCccc------ccccChhhhcccCCC----CceEEEEcCCCCCChhhHH-----Hh--hcCCCcEEEeeccccC
Q 024997            9 EQTDYFESVDY------KFEGEANLWGNASSD----THLVEFVTAPNNPDGQMNK-----AV--LKGPYAKSIYDHAYFW   71 (259)
Q Consensus         9 ~~~~~~g~~~~------~~~~d~~~l~~~~~~----~~~~i~i~~p~NPtG~~~~-----~l--a~~~~~~vi~De~y~~   71 (259)
                      ..++..|.++.      +..+|+++|++.+++    +++++++++++||||.+++     ++  |+++|+++|+|+++..
T Consensus       101 ~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~  180 (401)
T PLN02409        101 DQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSI  180 (401)
T ss_pred             HHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEccccc
Confidence            44555676552      124678889888854    7899999999999999983     78  9999999999998821


Q ss_pred             CCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh---------------hh---cCCCCHHHHH
Q 024997           72 PHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS---------------LN---TMGVSRECQL  132 (259)
Q Consensus        72 ~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~---------------~~---~~~~~~~~q~  132 (259)
                      . ..++. ...+.++++.|.+|.++.+ .++||++++ +++++.+.....               ..   ...++...+.
T Consensus       181 g-~~~id~~~~~~D~~~~s~~K~l~~P-~G~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~  257 (401)
T PLN02409        181 G-ALDFRMDEWGVDVALTGSQKALSLP-TGLGIVCAS-PKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLY  257 (401)
T ss_pred             C-CccccccccCccEEEEcCccccCcC-CCcceeEEC-HHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHH
Confidence            1 11221 2345678888889988532 259999999 688887754210               00   1234555666


Q ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-Cc-hHHH
Q 024997          133 RAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-EE-DKDC  210 (259)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~  210 (259)
                      ++.++++...    +.-+++.+++++++.+.+.+.|+.++ +.+.  .+       .-...++..+++.++. .+ .+..
T Consensus       258 al~~al~~~~----~~G~e~i~~~~~~l~~~l~~~L~~~g-~~~~--~~-------~~~~~s~~v~~~~~p~~~~~~~l~  323 (401)
T PLN02409        258 GLRAALDLIF----EEGLENVIARHARLGEATRLAVEAWG-LKLC--TK-------KPEWRSDTVTAVVVPEGIDSAEIV  323 (401)
T ss_pred             HHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHcC-Ceec--cC-------ChhhcccceEEEeCCCCCCHHHHH
Confidence            6667776431    22356677888888888888888763 2211  00       0011233445666653 23 3555


Q ss_pred             HHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          211 YGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       211 ~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      ..+++++||.+.+|..-. ....+||+...  +.+++..+++.|.+.|.+
T Consensus       324 ~~l~~~~~i~i~~G~~~~-~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~  372 (401)
T PLN02409        324 KNAWKKYNLSLGLGLNKV-AGKVFRIGHLGNVNELQLLGALAGVEMVLKD  372 (401)
T ss_pred             HHHHHhCCEEEEcCCCcc-cCCEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            677788999999877532 35889999865  889999999999988764

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.75  E-value=1e-16  Score=140.02  Aligned_cols=211  Identities=13%  Similarity=0.060  Sum_probs=145.8

Q ss_pred             ChhhhcccCCCCceEEEEcCCCCCChhhH----------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEecc
Q 024997           24 EANLWGNASSDTHLVEFVTAPNNPDGQMN----------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFTI   90 (259)
Q Consensus        24 d~~~l~~~~~~~~~~i~i~~p~NPtG~~~----------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~   90 (259)
                      |.+.+++.+.++....++..|.+++|.++          .++|+++|+++|+||+|  |+.....+. ...+.+..+.||
T Consensus       175 d~~~l~~~~~~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~  254 (408)
T PRK04612        175 DVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTL  254 (408)
T ss_pred             CHHHHHHhhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEE
Confidence            56778877765556669999999888776          28999999999999999  432221121 123456679999


Q ss_pred             ccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh
Q 024997           91 SKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISL  170 (259)
Q Consensus        91 SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  170 (259)
                      ||.++ +|+|+||++++ +++.+.+.......+++.+++.+.++.+.|+...+   +    ...++++++-+++.+.|++
T Consensus       255 ~K~l~-~G~piga~~~~-~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~---~----~l~~~~~~~g~~l~~~l~~  325 (408)
T PRK04612        255 AKALG-GGFPIGAMLAG-PKVAETMQFGAHGTTFGGNPLAAAVARVALRKLAS---P----QIAANVARQSAALRAGLEA  325 (408)
T ss_pred             cchhc-CCCceEEEEEC-HHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHh---c----cHHHHHHHHHHHHHHHHHH
Confidence            99998 89999999999 68888887655556788899999999999986421   1    2355666666666666665


Q ss_pred             cCCCccccccccccccceeeCCCCCeeEEEecCCC---chHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhH
Q 024997          171 SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDF  245 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~  245 (259)
                      +..    ..     ..+..+...| ...-+.+...   ....+.+.+.++||.+.+     .+.+.+|+...  .+++++
T Consensus       326 l~~----~~-----~~i~~vrg~G-l~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~-----~g~~~lRl~Ppl~it~eei  390 (408)
T PRK04612        326 LNA----EF-----GVFAQVRGRG-LMLGAVLAPAHAGQAGAILDLAAEHGLLLLQ-----AGPDVLRFVPALNLTDAEL  390 (408)
T ss_pred             HHh----hC-----CCeeeeeccc-eEEEEEecCchhhHHHHHHHHHHHCCeEEee-----CCCCEEEEcCCccCCHHHH
Confidence            431    00     0122334443 3334443211   134455566689999976     23478999864  389999


Q ss_pred             HHHHHHHHHHhhh
Q 024997          246 DLLLHRLDELISK  258 (259)
Q Consensus       246 ~~~~~~l~~~l~~  258 (259)
                      +++++++.+.+.+
T Consensus       391 d~~l~~l~~~l~~  403 (408)
T PRK04612        391 ADGLARLRLALAD  403 (408)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988753

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.75  E-value=1.1e-16  Score=136.84  Aligned_cols=217  Identities=13%  Similarity=0.125  Sum_probs=149.7

Q ss_pred             hccCccccc-ccChhhhcccCCC------CceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc----cCCCCCC
Q 024997           13 YFESVDYKF-EGEANLWGNASSD------THLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY----FWPHFAP   76 (259)
Q Consensus        13 ~~g~~~~~~-~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y----~~~~~~~   76 (259)
                      +.+.+...| ..|++.|++.+.+      +.++|++..--...|.+.+     +++++||+++++||+|    +++.+..
T Consensus       142 ls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG  221 (388)
T COG0156         142 LSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRG  221 (388)
T ss_pred             hCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCcc
Confidence            344444444 5888999998843      3688888888889999873     8999999999999999    4555444


Q ss_pred             CC---C--CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhh--hcCCCCHHHHHHHHHHHHHHHhcCCcch
Q 024997           77 IP---A--PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL--NTMGVSRECQLRAFKLLKVVLEDGGNNI  149 (259)
Q Consensus        77 ~~---~--~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~  149 (259)
                      +.   +  ..+.+|+++||||+||..|   ||+.++ +.+++.+.+..+.  .+.+.+|..-+++...++..      ..
T Consensus       222 ~~e~~g~~~~~vdi~~gTlsKAlGs~G---g~v~g~-~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l------~~  291 (388)
T COG0156         222 LAEHFGLEPEEVDIIVGTLGKALGSSG---GYIAGS-AALIDYLRNRARPFIFSTALPPAVAAAALAALRIL------EE  291 (388)
T ss_pred             HHHHhCCCCccceEEEEEchhhhcccC---ceeeCc-HHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHH------Hh
Confidence            43   2  2445899999999999999   999999 7999999886543  34555665555666666643      12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC--CchHHHHHHHHHcCeeeecCCcc
Q 024997          150 FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--EEDKDCYGILKAAKIIGREGKKF  227 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~gi~~~~g~~f  227 (259)
                      ....+++++++...+...++..+              +...+...++. .+-+.+  ...+....+++ .||.+.+....
T Consensus       292 ~~~~r~~L~~~~~~~~~~~~~~~--------------~~~~~s~s~I~-pv~~gd~~~a~~~s~~l~~-~Gi~v~~i~~P  355 (388)
T COG0156         292 GPERRERLQELAAFFRSLLKALG--------------LVLLPSESPII-PVILGDEERALEASRALLE-EGIYVSAIRPP  355 (388)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcC--------------CccCCCCCCee-eeEeCCHHHHHHHHHHHHH-CCeeEeeecCC
Confidence            34568888888888886666544              22223333333 222222  23455556665 49999875433


Q ss_pred             cC--CCCeEEEEeec--ChhhHHHHHHHHHHH
Q 024997          228 RA--EARFVRLSLLK--SQDDFDLLLHRLDEL  255 (259)
Q Consensus       228 ~~--~~~~~Ris~~~--~~~~~~~~~~~l~~~  255 (259)
                      -.  +...+|++++.  ++++|+.+++.+.++
T Consensus       356 TVp~gtarlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         356 TVPKGTARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             CCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence            33  35689999865  899999999988765

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.74  E-value=1.3e-15  Score=131.78  Aligned_cols=169  Identities=11%  Similarity=0.036  Sum_probs=119.5

Q ss_pred             CCCcccchhhh----hhccCcccccccC-hhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeecccc
Q 024997            1 MPFYPLYQEQT----DYFESVDYKFEGE-ANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~~~~~~~----~~~g~~~~~~~~d-~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~   70 (259)
                      +|.|+.....+    ...|.++..+..+ .+.+++.+++++++|++++|+||+|.+..     ++|+++|+++|+|++|-
T Consensus        96 ~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a  175 (377)
T TIGR01324        96 DSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWA  175 (377)
T ss_pred             CCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence            46666554332    2334444333222 26788888889999999999999999873     88999999999999992


Q ss_pred             CCCCCCCCCCCCCeEEEeccccccC-CCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcch
Q 024997           71 WPHFAPIPAPADEELMIFTISKLTG-HAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNI  149 (259)
Q Consensus        71 ~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  149 (259)
                      .+... -+...+.+++++|++|.++ .+++..|++++. ++.++.+.......+...++..-+...+.++         .
T Consensus       176 ~g~~~-~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~-~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~---------t  244 (377)
T TIGR01324       176 AGLLF-KPLEHGVDISIQAGTKYLVGHSDIMIGTVVAN-ARTWDQLREHSYLMGQMVDADDAYTTLRGLR---------T  244 (377)
T ss_pred             ccccc-CccccCceEEEecCceeccCCCCceEEEEEeC-HHHHHHHHHHHHHhCCCCCHHHHHHHHhhhh---------h
Confidence            11111 1123456899999999995 556888999988 6888877766555566667755444444443         6


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 024997          150 FEFGYNTMKKRWENLSKIISLSNRFSLQEIA  180 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  180 (259)
                      +..++++.+++...+.+.|++.+.+.....|
T Consensus       245 l~~R~~~~~~~a~~la~~L~~~p~v~~v~yp  275 (377)
T TIGR01324       245 LGVRLKQHQESSLAIAKWLSEQPEVARVLHP  275 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcCEEECC
Confidence            6677899999999999999999876544333

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.74  E-value=5.5e-16  Score=134.12  Aligned_cols=208  Identities=11%  Similarity=0.046  Sum_probs=139.5

Q ss_pred             CCCcccchhh----hhhccCcccccccC-hhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeecccc
Q 024997            1 MPFYPLYQEQ----TDYFESVDYKFEGE-ANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~~~~~~----~~~~g~~~~~~~~d-~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~   70 (259)
                      +|.|+++...    ++..|.++..+..+ .+.+++++++++++|++++|+||+|.+..     ++|+++|+++|+|++|-
T Consensus       110 ~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a  189 (395)
T PRK05967        110 DSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWA  189 (395)
T ss_pred             cCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence            4778877653    34456655444433 36688889889999999999999999883     88999999999999982


Q ss_pred             CCCCCCCCCCCCCeEEEecccccc-CCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcch
Q 024997           71 WPHFAPIPAPADEELMIFTISKLT-GHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNI  149 (259)
Q Consensus        71 ~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  149 (259)
                      .+ ...-+...+.++++.|.+|.+ |..++..|+++.. +++.+++.......+.+.++...+.+.+         .-+.
T Consensus       190 ~p-~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~-~~~~~~l~~~~~~~G~~~~p~da~l~~r---------gl~T  258 (395)
T PRK05967        190 TP-LYFRPLDFGVDISIHAATKYPSGHSDILLGTVSAN-EKCWPQLLEAHGTLGLCAGPDDTYQILR---------GLRT  258 (395)
T ss_pred             Cc-eecChhHcCCCEEEEecccccCCCCCeeEEEEEcC-HHHHHHHHHHHHHcCCCCCHHHHHHHHc---------Cccc
Confidence            11 111112345679999999997 5678889988877 5777777766665667777765443333         3447


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc----cceeeCCCCCeeEEEecCCC---chHHHHHHHHHcCe
Q 024997          150 FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCT----YFKKIRPPSPAYAWVKCERE---EDKDCYGILKAAKI  219 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gi  219 (259)
                      +..++++..++...+.+.|++.+.+.....|.....    .++......|-.+.+.++..   +.+.+.+++++-.+
T Consensus       259 l~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~~~l~l  335 (395)
T PRK05967        259 MGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLDALEI  335 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHHHhCCc
Confidence            788899999999999999999987754444431111    01111112233456666532   34555666655444

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.74  E-value=7.8e-17  Score=141.45  Aligned_cols=236  Identities=12%  Similarity=0.123  Sum_probs=140.9

Q ss_pred             hhhhhhccCcccccc-cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCC
Q 024997            8 QEQTDYFESVDYKFE-GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPA   81 (259)
Q Consensus         8 ~~~~~~~g~~~~~~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~   81 (259)
                      ...+...|.++..+. .|++++++.+++++++|++++|+||||.+.     .++|+++|+++|+|++|-.+ ....+...
T Consensus       114 ~~~~~~~G~~v~~v~~~d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~-~~~~~l~~  192 (418)
T TIGR01326       114 KHTLKRLGIEVRFVDPDDPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATP-YLCRPIDH  192 (418)
T ss_pred             HHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchh-hcCCchhc
Confidence            334455666654332 367889999988899999999999999987     38899999999999998211 11111123


Q ss_pred             CCeEEEeccccccCCCcceEEEEEecCHHHHHH--------------------------------HHHhhhhhcCCCCHH
Q 024997           82 DEELMIFTISKLTGHAGSRFGWAVIKDEAVYQR--------------------------------MSAYISLNTMGVSRE  129 (259)
Q Consensus        82 ~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~  129 (259)
                      +.++++.|+||.++.+|+|+||++++.+++...                                ........+...++.
T Consensus       193 g~Divv~S~sK~l~g~G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~  272 (418)
T TIGR01326       193 GADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYHGLVFTETFGNPAFIVKARVQLLRDLGAALSPF  272 (418)
T ss_pred             CCeEEEECccccccCCccceEEEEEecccccccccccccccCCCCccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHH
Confidence            568999999999998999999999863222110                                001112223444443


Q ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc----ceeeC-CCCCeeEEEecCC
Q 024997          130 CQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTY----FKKIR-PPSPAYAWVKCER  204 (259)
Q Consensus       130 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~  204 (259)
                      ..+.   ++.      .-..+..+.++..++...+.+.|.+.+.+.....|......    ..... ...|-.+.+.++.
T Consensus       273 ~a~~---~~~------~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~yP~l~~~~~~~~~~~~~~~g~g~~~s~~l~~  343 (418)
T TIGR01326       273 NAFL---LLQ------GLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLASHPHHALAKKYLPKGFGAVLSFEIKG  343 (418)
T ss_pred             HHHH---HHC------CcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhccCCCcceEEEEecC
Confidence            2222   222      23355556677778889999999998877655544421111    11111 1234345556653


Q ss_pred             CchHHHHHHHHHcCeeee---cCC------------c----------ccCCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          205 EEDKDCYGILKAAKIIGR---EGK------------K----------FRAEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       205 ~~~~~~~~ll~~~gi~~~---~g~------------~----------f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                       +.+.+.++++.-.+...   -|.            +          .+.+++.+|||++-  |+.+++++-|.+.|
T Consensus       344 -~~~~~~~f~~~l~l~~~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~Al  417 (418)
T TIGR01326       344 -GREAGKKFIDALKLASHLANVGDAKSLVIHPASTTHQQLSEEEQLKAGVTPGLIRLSVGI--ENIDDIIADLEQAL  417 (418)
T ss_pred             -CHHHHHHHHHhCCcceeccccCCCCceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHhh
Confidence             23444555554444221   111            0          01125689999987  34555555555544

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.74  E-value=3.3e-16  Score=135.78  Aligned_cols=229  Identities=11%  Similarity=0.069  Sum_probs=146.9

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY   69 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y   69 (259)
                      +|+|+.|...++..|.++.      .+.+|+++|++.+++++..+++++|+||||.+.     .++|+++|+++++|++|
T Consensus       113 ~~~h~~~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~  192 (373)
T TIGR03812       113 ESAHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAF  192 (373)
T ss_pred             CcchHHHHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCc
Confidence            3667777777887787652      345788999998877665556666899999987     38899999999999999


Q ss_pred             c---CC---CCC---CCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcC-------C-CCHHHH
Q 024997           70 F---WP---HFA---PIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTM-------G-VSRECQ  131 (259)
Q Consensus        70 ~---~~---~~~---~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~-------~-~~~~~q  131 (259)
                      -   .+   ...   .+. ....-..+..|.+| ++.++.+.|+++..++++++.+.........       + .+....
T Consensus       193 ~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K-~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~  271 (373)
T TIGR03812       193 GGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHK-MGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASA  271 (373)
T ss_pred             hhHHHHHHhcCCCCCCccccCCCCCEEEECccc-cCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHH
Confidence            2   00   000   111 11122445567789 5667788886664336888776421111110       1 123344


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHH
Q 024997          132 LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCY  211 (259)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (259)
                      .++...++..    ....+++..++..++++.+.+.|++++.             .....+ ...++.+.++.  .+.+.
T Consensus       272 ~~~~~~l~~l----~~~g~~~~~~~~~~~~~~l~~~L~~~g~-------------~~~~~~-~~~~v~~~~~~--~~~v~  331 (373)
T TIGR03812       272 AATYAVIKYL----GREGYRKIVAECMENTRYLVEELKKIGF-------------EPVIEP-VLNIVAFEVDD--PEEVR  331 (373)
T ss_pred             HHHHHHHHHh----CHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------eEEcCC-CceEEEEEeCC--HHHHH
Confidence            4455555532    2334567788899999999999987652             111122 23455565553  33455


Q ss_pred             HHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHH
Q 024997          212 GILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDE  254 (259)
Q Consensus       212 ~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~  254 (259)
                      +.|.++||.++++.    .++++|+|+..  ++++++.+++.|++
T Consensus       332 ~~L~~~gi~v~~~~----~~~~iRis~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       332 KKLRDRGWYVSVTR----CPKALRIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             HHHHHCCceeccCC----CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence            55667899987642    34789999974  88999999999876

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.74  E-value=1.3e-16  Score=140.00  Aligned_cols=200  Identities=11%  Similarity=0.094  Sum_probs=127.9

Q ss_pred             hhhhhccCcccccc-cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCC
Q 024997            9 EQTDYFESVDYKFE-GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPAD   82 (259)
Q Consensus         9 ~~~~~~g~~~~~~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~   82 (259)
                      ..++..|.++..+. .|++++++.+++++++|++++|+||||.++     .++|+++|+++|+|++|- ......+...+
T Consensus       122 ~~~~~~Gv~v~~vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a-~~~~~~pl~~g  200 (431)
T PRK08248        122 HTLPKLGITVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFA-SPYLLRPIEHG  200 (431)
T ss_pred             HHHHhCCEEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCC-ccccCChhHcC
Confidence            34445666654333 367889999988899999999999999998     388999999999999872 11111112346


Q ss_pred             CeEEEeccccccCCCcceEEEEEecCHHH---------------------------------HHHHHHhhhhhcCCCCHH
Q 024997           83 EELMIFTISKLTGHAGSRFGWAVIKDEAV---------------------------------YQRMSAYISLNTMGVSRE  129 (259)
Q Consensus        83 ~~i~~~S~SK~~g~~G~R~G~i~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~  129 (259)
                      .++++.|++|.+|.+|.++|++++...+.                                 ...........+...++.
T Consensus       201 aDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~  280 (431)
T PRK08248        201 ADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPF  280 (431)
T ss_pred             CCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHH
Confidence            78999999999999999999988742211                                 011112223344556665


Q ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc----ceeeC-CCCCeeEEEecCC
Q 024997          130 CQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTY----FKKIR-PPSPAYAWVKCER  204 (259)
Q Consensus       130 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~  204 (259)
                      ..+.+.+         .-+.+..+.++.+++...+.+.|++++.+.....|+.....    ..... ...|-.+.+.++.
T Consensus       281 ~a~l~~r---------gl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~  351 (431)
T PRK08248        281 NSFLLLQ---------GLETLHLRMERHSENALAVAKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKG  351 (431)
T ss_pred             HHHHHhc---------CcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecC
Confidence            4443333         33467778999999999999999999987644444321111    11111 1224455666654


Q ss_pred             CchHHHHHHHHHcCe
Q 024997          205 EEDKDCYGILKAAKI  219 (259)
Q Consensus       205 ~~~~~~~~ll~~~gi  219 (259)
                       +.+.+.++++.-.+
T Consensus       352 -~~~~~~~f~~~l~l  365 (431)
T PRK08248        352 -GVEAGKKLIDSVKL  365 (431)
T ss_pred             -CHHHHHHHHHhCCc
Confidence             23445555554444

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.74  E-value=2.3e-16  Score=136.09  Aligned_cols=236  Identities=14%  Similarity=0.085  Sum_probs=145.0

Q ss_pred             CCcccc----hhhhhhccCccc----ccccChhhhcccCCCCceEEE-EcCCCCCChhhH-----HHhhcCCCcEEEeec
Q 024997            2 PFYPLY----QEQTDYFESVDY----KFEGEANLWGNASSDTHLVEF-VTAPNNPDGQMN-----KAVLKGPYAKSIYDH   67 (259)
Q Consensus         2 P~y~~~----~~~~~~~g~~~~----~~~~d~~~l~~~~~~~~~~i~-i~~p~NPtG~~~-----~~la~~~~~~vi~De   67 (259)
                      |.|+.|    .....+.|..+.    .+.+|++++++++++++++++ +++||||+|.+.     .++|+++|+++|+|+
T Consensus       107 ~~~~~~~~~~~~~~~~~g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~  186 (363)
T TIGR01437       107 GHNVDYGAPVETMVRLGGGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDA  186 (363)
T ss_pred             ccchhcCCchHHHHHhcCCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEEC
Confidence            556655    355566676552    356889999999998888655 678999999876     489999999999999


Q ss_pred             cccCCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhc--CCCCHHHHHHHHHHHHHHHhcC
Q 024997           68 AYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNT--MGVSRECQLRAFKLLKVVLEDG  145 (259)
Q Consensus        68 ~y~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~  145 (259)
                      +| ....... ...+.++++.|++|.+  .|++.|+++.+ +++++.+........  .........+..++++...+ .
T Consensus       187 a~-~~~~~~~-~~~g~D~~~~S~~K~l--~gp~~G~l~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~-~  260 (363)
T TIGR01437       187 AA-EEDLQKY-YRLGADLVIYSGAKAI--EGPTSGLVLGK-KKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLS-T  260 (363)
T ss_pred             CC-CCchHHH-HHcCCCEEEEeCCccc--CCCceEEEEEc-HHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHc-c
Confidence            88 2111110 1123478889999977  57789999988 688887654322110  01111222333334443211 1


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecC--CCchHHHHHHHHHcC--eee
Q 024997          146 GNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCE--REEDKDCYGILKAAK--IIG  221 (259)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~g--i~~  221 (259)
                      ..    +..+.+.++++.+.+.|++++++.+....+...    ...+  .+-+.++..  ..+.+.+.+.|++++  |.+
T Consensus       261 ~~----~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~----~~~~--~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~  330 (363)
T TIGR01437       261 GK----ESGAEMVAKLTPFIEALNTLKGVSASIVQDEAG----RDIA--RAEIRFDESELGMTAADVVQALRQGEPAIYT  330 (363)
T ss_pred             Cc----ccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCC----CcCc--eEEEEEeccCCCCCHHHHHHHHhcCCCCEEE
Confidence            22    234445566777888898877644321111000    0000  011223332  235667777777777  666


Q ss_pred             ecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHh
Q 024997          222 REGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELI  256 (259)
Q Consensus       222 ~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l  256 (259)
                      ++  + ..+.+.+|+++.. ++++++.+.++|++++
T Consensus       331 r~--~-~~~~~~~~l~~~~~~~~e~~~~~~~l~~~~  363 (363)
T TIGR01437       331 RG--Y-KANEGIIEIDPRSVTGGQLDIIVERIREIV  363 (363)
T ss_pred             ee--e-eecCCeEEEEeecCCHHHHHHHHHHHHHhC
Confidence            65  3 3346889999876 8999999999998864

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.73  E-value=1.3e-16  Score=141.44  Aligned_cols=203  Identities=11%  Similarity=0.103  Sum_probs=132.3

Q ss_pred             CCceEEEEcCCCCCChhh-H---------HHhhcCCCcEEEeeccc--cCCC--CCCCCCCCCCeEEEeccccccCCCcc
Q 024997           34 DTHLVEFVTAPNNPDGQM-N---------KAVLKGPYAKSIYDHAY--FWPH--FAPIPAPADEELMIFTISKLTGHAGS   99 (259)
Q Consensus        34 ~~~~~i~i~~p~NPtG~~-~---------~~la~~~~~~vi~De~y--~~~~--~~~~~~~~~~~i~~~S~SK~~g~~G~   99 (259)
                      ++..+-+|..|-+.+|.+ +         .++|+++|+++|+||+|  |+..  ...+. ..+..-.+.|+||.++ +|+
T Consensus       217 ~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~-~~~v~pDi~t~sK~l~-~G~  294 (451)
T PRK06918        217 PETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIE-HFDVVPDLITVSKSLG-AGV  294 (451)
T ss_pred             CCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhH-hcCCCCCEEeeehhhc-CCC
Confidence            333444777887766443 3         28999999999999999  4211  11111 1111112669999998 999


Q ss_pred             eEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q 024997          100 RFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEI  179 (259)
Q Consensus       100 R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  179 (259)
                      |+||++++ +++.+.+.......+++.+++.|.++.+.++...++   ..    .+.+++..+.+.+.|+.+..    ..
T Consensus       295 pig~v~~~-~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~---~~----~~~~~~~g~~l~~~l~~l~~----~~  362 (451)
T PRK06918        295 PISGVIGR-KEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKE---NL----NDRAIELGKVVMNRFEEMKN----KY  362 (451)
T ss_pred             ccEEEEEc-HHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHC---CH----HHHHHHHHHHHHHHHHHHHh----hC
Confidence            99999999 799998876556678899999999988888754222   21    23334444444444443320    00


Q ss_pred             cccccccceeeCCCCCeeEEEecCC-----Cc---hHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHHHH
Q 024997          180 APQYCTYFKKIRPPSPAYAWVKCER-----EE---DKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDLLL  249 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~~~  249 (259)
                      +     .+..+.+.|+++.|....+     .+   .+.+...+.++||.+.|+..|+   +++||+++  .+++++++++
T Consensus       363 ~-----~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~---~~lrl~p~l~~t~~~id~~l  434 (451)
T PRK06918        363 N-----CIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYG---NVIRVLMPLVITDEQLEEGL  434 (451)
T ss_pred             C-----CceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCCC---CEEEEECCCccCHHHHHHHH
Confidence            0     1334566777777765421     12   2233444467899999976553   78999985  4899999999


Q ss_pred             HHHHHHhhh
Q 024997          250 HRLDELISK  258 (259)
Q Consensus       250 ~~l~~~l~~  258 (259)
                      ++|.+++++
T Consensus       435 ~~l~~~l~~  443 (451)
T PRK06918        435 TIIEESLQA  443 (451)
T ss_pred             HHHHHHHHH
Confidence            999988753

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.73  E-value=2.1e-16  Score=138.06  Aligned_cols=212  Identities=17%  Similarity=0.091  Sum_probs=139.1

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEecc
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFTI   90 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~   90 (259)
                      .|++.+++.+.+++++|++..++++.|...         .++|+++|+++|+||+|  |+....... ...+...-+-|+
T Consensus       167 ~d~~~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t~  246 (397)
T TIGR03246       167 NDLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTS  246 (397)
T ss_pred             CCHHHHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEEEe
Confidence            477889888877788866664445555442         28999999999999998  421111111 111111224489


Q ss_pred             ccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh
Q 024997           91 SKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISL  170 (259)
Q Consensus        91 SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  170 (259)
                      ||.+| .|+++||++++ +++.+.+.......+.+.+++.+.++.+.++...   .    .+..++++++.+++.+.|++
T Consensus       247 ~K~lg-gG~pigav~~~-~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~---~----~~l~~~~~~~~~~l~~~L~~  317 (397)
T TIGR03246       247 AKALG-GGFPIGAMLTT-TEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVN---T----PELLAGVKQRHDLFVDGLEK  317 (397)
T ss_pred             ehhhh-CCcceeEEEEc-HHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHh---h----ccHHHHHHHHHHHHHHHHHH
Confidence            99998 79999999999 6999888655444567788999999888887531   1    23467788888888888876


Q ss_pred             cCCCccccccccccccceeeCCCCCeeEEEecCC---CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEe--ecChhhH
Q 024997          171 SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER---EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSL--LKSQDDF  245 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~--~~~~~~~  245 (259)
                      +..    ..     ..+......+.+ +.+.+..   .....+...|.++|+.+.+.     +.+++|++.  ..+++++
T Consensus       318 l~~----~~-----~~~~~vrg~G~~-~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~-----g~~~lR~~p~~~~t~~~i  382 (397)
T TIGR03246       318 INA----RY-----NVFSEIRGKGLL-IGAVLTEAYQGKAKQFVNAAAEEGVIALIA-----GPNVVRFAPSLVISDDDI  382 (397)
T ss_pred             HHh----cC-----CCeEeeecCceE-EEEEEcCchhhHHHHHHHHHHHCCeEEeec-----CCCEEEEeCCCCCCHHHH
Confidence            541    00     012233333333 3333322   12233444455689998762     347899964  4599999


Q ss_pred             HHHHHHHHHHhhh
Q 024997          246 DLLLHRLDELISK  258 (259)
Q Consensus       246 ~~~~~~l~~~l~~  258 (259)
                      ++++++|.+++.+
T Consensus       383 ~~~~~~l~~~l~~  395 (397)
T TIGR03246       383 DEGLARFERAIEQ  395 (397)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998763

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.73  E-value=3.6e-16  Score=135.49  Aligned_cols=229  Identities=13%  Similarity=0.111  Sum_probs=144.6

Q ss_pred             ccCcccccc-cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEE
Q 024997           14 FESVDYKFE-GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMI   87 (259)
Q Consensus        14 ~g~~~~~~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~   87 (259)
                      .|.++..+. .|++++++.+++++++|++++|+||||.+.     .++|+++|+++|+|++|-.+ ....+.....++++
T Consensus       112 ~gi~v~~vd~~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~-~~~~p~~~gaDivv  190 (380)
T PRK06176        112 NGLSCTIIDTSDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATP-YYQNPLLLGADIVV  190 (380)
T ss_pred             cCeEEEEcCCCCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcccc-ccCCccccCCCEEE
Confidence            454443222 467889998988999999999999999998     38999999999999998211 11111123457999


Q ss_pred             eccccccCCCc-ceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 024997           88 FTISKLTGHAG-SRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSK  166 (259)
Q Consensus        88 ~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (259)
                      .|++|.++.+| .-.|+++..++++.+.+...+.......++...+....         .-..+..++++..++...+.+
T Consensus       191 ~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~---------gl~tl~~R~~~~~~~a~~la~  261 (380)
T PRK06176        191 HSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQR---------GIKTLGLRMEAHQKNALCVAE  261 (380)
T ss_pred             ecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHh---------ccCcHHHHHHHHHHHHHHHHH
Confidence            99999997554 55677887556788878776665555556654443322         334567778888999999999


Q ss_pred             HHHhcCCCccccccccccc----cceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCccc--------------
Q 024997          167 IISLSNRFSLQEIAPQYCT----YFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFR--------------  228 (259)
Q Consensus       167 ~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~--------------  228 (259)
                      .|+..+.+.....+.....    .++......|..+.++++.  .+.+.++++.-.+.. .+.+++              
T Consensus       262 ~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~--~~~~~~f~~~l~~~~-~~~s~G~~~sl~~~p~~~~~  338 (380)
T PRK06176        262 FLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKN--DSEAVAFVESLKLFI-LGESLGGVESLVGIPAFMTH  338 (380)
T ss_pred             HHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC--HHHHHHHHHcCCcce-EccCCCCCCceeeCCccccc
Confidence            9999887654333331111    1222222344556667753  345556665544421 111111              


Q ss_pred             ------------CCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          229 ------------AEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       229 ------------~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                                  .+++.+|||++-  |+.+++++-|.+.|+
T Consensus       339 ~~~~~~~~~~~gi~~~liR~svGl--E~~~dli~dl~~Al~  377 (380)
T PRK06176        339 ACIPKEQREAAGIRDGLVRLSVGI--EHEQDLLEDLEQAFA  377 (380)
T ss_pred             ccCCHHHHHhcCCCcCeEEEEecc--CCHHHHHHHHHHHHh
Confidence                        125689999987  334445555555443

>PLN02509 cystathionine beta-lyase

Probab=99.73  E-value=6.5e-16  Score=136.19  Aligned_cols=242  Identities=12%  Similarity=0.085  Sum_probs=150.3

Q ss_pred             CCCcccchhhh----hhccCccccc-ccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeecccc
Q 024997            1 MPFYPLYQEQT----DYFESVDYKF-EGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~~~~~~~----~~~g~~~~~~-~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~   70 (259)
                      +|.|+.+...+    ...|.++..+ ..|++++++.+++++++|++++|+||+|.+..     ++|+++|+++|+|++|.
T Consensus       178 ~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a  257 (464)
T PLN02509        178 DDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIM  257 (464)
T ss_pred             CCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcc
Confidence            36777765333    3446654322 34678899999889999999999999999873     88999999999999983


Q ss_pred             CCCCCCCCCCCCCeEEEeccccccCC-CcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcch
Q 024997           71 WPHFAPIPAPADEELMIFTISKLTGH-AGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNI  149 (259)
Q Consensus        71 ~~~~~~~~~~~~~~i~~~S~SK~~g~-~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  149 (259)
                      .+.. ..+...+.+++++|++|.++. .++-.|++++.++.+.+.+...+.......++...+.+...++         .
T Consensus       258 ~~~~-~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~---------t  327 (464)
T PLN02509        258 SPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIK---------T  327 (464)
T ss_pred             cccc-CChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhhh---------h
Confidence            2211 111123457999999999864 3345688887545666666555544444556665444444444         6


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc----cee-eCCCCCeeEEEecCCCchHHHHHHHHHcCee---e
Q 024997          150 FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTY----FKK-IRPPSPAYAWVKCEREEDKDCYGILKAAKII---G  221 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~---~  221 (259)
                      +..++++.+++...+.+.|++.+.+.....|+...+.    ++. ...-||++ .+.+.  +.+...++++.-.+.   +
T Consensus       328 L~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~-sf~~~--~~~~~~~f~~~l~l~~~a~  404 (464)
T PLN02509        328 MALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVF-SFITG--SVALSKHLVETTKYFSIAV  404 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEE-EEEeC--CHHHHHHHHHcCCcceEcc
Confidence            6778999999999999999999876544444321111    111 11224444 33553  344455555544431   1


Q ss_pred             ecCC------------cc----------cCCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          222 REGK------------KF----------RAEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       222 ~~g~------------~f----------~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      .-|.            +.          +.+++.+|||++-  |+.+++++-|.+.|+
T Consensus       405 slG~~~SLi~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvGl--E~~~DLi~Dl~~Al~  460 (464)
T PLN02509        405 SFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI--EDVDDLISDLDIAFR  460 (464)
T ss_pred             cCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHc
Confidence            1121            11          1125789999987  345555555555553

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.73  E-value=7.6e-17  Score=142.11  Aligned_cols=207  Identities=14%  Similarity=0.130  Sum_probs=136.4

Q ss_pred             ChhhhcccCC---CCceEEEEc-CCCCCChhhH---------HHhhcCCCcEEEeeccc--c--CCCCC-CCCCCCCCeE
Q 024997           24 EANLWGNASS---DTHLVEFVT-APNNPDGQMN---------KAVLKGPYAKSIYDHAY--F--WPHFA-PIPAPADEEL   85 (259)
Q Consensus        24 d~~~l~~~~~---~~~~~i~i~-~p~NPtG~~~---------~~la~~~~~~vi~De~y--~--~~~~~-~~~~~~~~~i   85 (259)
                      |+++|++.+.   ++++++++. .|+| +|.+.         .++|+++|+++|+||+|  |  +..+. ...+..+ . 
T Consensus       181 d~~~l~~~i~~~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~p-D-  257 (423)
T TIGR00713       181 DLEALEEVFEEYGEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEP-D-  257 (423)
T ss_pred             CHHHHHHHHHHcCCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCc-c-
Confidence            6778888774   466776664 7888 67665         28899999999999999  3  11111 0112111 1 


Q ss_pred             EEeccccccCCCcceEEEEEecCHHHHHHHHH---hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 024997           86 MIFTISKLTGHAGSRFGWAVIKDEAVYQRMSA---YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWE  162 (259)
Q Consensus        86 ~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (259)
                       +.||||.++ +|+|+||++++ +++.+.+..   .....+++.+++.|.++.+.++...   ..++.+...+..+..++
T Consensus       258 -i~t~sK~l~-~G~pig~v~~~-~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~---~~~~~~~~~~~~~~~~~  331 (423)
T TIGR00713       258 -LTTLGKIIG-GGLPVGAFGGR-REIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLD---EEGVYTELDELAKRLAE  331 (423)
T ss_pred             -hhhhhhhhc-CCCceeeeeEH-HHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHH
Confidence             448999998 99999999999 799998864   2234567899999999999988642   22355556666666666


Q ss_pred             HHHHHHHhcCCCccccccccccccceeeCCCCCe-eEEEecCCC---------ch----HHHHHHHHHcCeeeecCCccc
Q 024997          163 NLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPA-YAWVKCERE---------ED----KDCYGILKAAKIIGREGKKFR  228 (259)
Q Consensus       163 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~----~~~~~ll~~~gi~~~~g~~f~  228 (259)
                      .+.+.+++++.             .......+++ .+++..+..         +.    .+...++ ++||.+.++ .| 
T Consensus       332 ~l~~~~~~~~~-------------~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~-~~-  395 (423)
T TIGR00713       332 GLSEVLEDTGI-------------PHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEML-DKGVFLPPS-QF-  395 (423)
T ss_pred             HHHHHHHhcCC-------------CeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHH-HCCeEEecC-Cc-
Confidence            66666665431             1111233443 333432210         11    2334444 689998653 22 


Q ss_pred             CCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          229 AEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       229 ~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                         +.+|++...+++++++++++|.+++++
T Consensus       396 ---~~~~l~~~~t~~~i~~~~~~l~~~l~~  422 (423)
T TIGR00713       396 ---EACFLSAAHTEEDIENTIEAAEEVFAE  422 (423)
T ss_pred             ---cceeeECCCCHHHHHHHHHHHHHHHhh
Confidence               457999877999999999999998864

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK05968 hypothetical protein; Provisional

Probab=99.73  E-value=7.2e-16  Score=134.14  Aligned_cols=218  Identities=11%  Similarity=0.004  Sum_probs=137.9

Q ss_pred             hhhhhccCcccccc-cChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccccCCC-CCCCCCCC
Q 024997            9 EQTDYFESVDYKFE-GEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYFWPH-FAPIPAPA   81 (259)
Q Consensus         9 ~~~~~~g~~~~~~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~~~~-~~~~~~~~   81 (259)
                      ..+...|.++..+. .|++++++.+ +++++|++++|+||++.+..     ++|+++|+++|+|++|..+. ..++  ..
T Consensus       121 ~~~~~~G~~v~~vd~~d~~~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p~--~~  197 (389)
T PRK05968        121 TILKRMGVEVDYVDGRDEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPI--TL  197 (389)
T ss_pred             HHHHHcCceEEEeCCCCHHHHHHhc-ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCch--hc
Confidence            34444566654332 3678888887 56889999999999998873     88999999999999982111 1112  12


Q ss_pred             CCeEEEeccccccCCCc-ceEEEEEecCHHHHHHHHHhhh-hhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 024997           82 DEELMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAYIS-LNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKK  159 (259)
Q Consensus        82 ~~~i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  159 (259)
                      +.++++.|+||.++.+| ++.|+++.+ ++++++++.... ......+++.++.+...++         .+..+.++..+
T Consensus       198 g~Divv~S~tK~l~g~~~~~gG~i~~~-~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~---------tl~~r~~~~~~  267 (389)
T PRK05968        198 GVDLVIHSASKYLGGHSDTVAGVVAGS-KEHIARINAEAYPYLGAKLSPFEAWLLLRGLR---------TLPLRMKAHEA  267 (389)
T ss_pred             CCcEEEeeccccccCCCCeEEEEEEEC-HHHHHHHHHHHHHhCCCCCChHHHHHHHcccC---------cHHHHHHHHHH
Confidence            34688999999997644 688999988 688888876543 2345567766665544444         45667778888


Q ss_pred             HHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCccc----------
Q 024997          160 RWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFR----------  228 (259)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~----------  228 (259)
                      +...+.+.|++++.+.....+....+. +......+..+.++++.. +...+...|+..++.+.-|..+.          
T Consensus       268 ~a~~la~~L~~~p~v~~v~~p~l~~~~-~~~~~g~g~~~sf~~~~~~~~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~~  346 (389)
T PRK05968        268 SALEIARRLKAHPVVERVCHPALANHP-PAGLSGTSGLFSFIFREGIDVRAFADALKLFRLGVSWGGHESLVVPAEVVLQ  346 (389)
T ss_pred             HHHHHHHHHHhCCCccEEECCCCCCCh-HHhCCCCceEEEEEECCHHHHHHHHHhCCccEEecCCCCCCceeeeCccccc
Confidence            899999999988865433322210000 000011232444555422 33445555555666655553332          


Q ss_pred             ------------CCCCeEEEEeec
Q 024997          229 ------------AEARFVRLSLLK  240 (259)
Q Consensus       229 ------------~~~~~~Ris~~~  240 (259)
                                  .+++.+|+|++-
T Consensus       347 ~~~~~~~~~~~gi~~~liR~SvGl  370 (389)
T PRK05968        347 QKAQPNSAARFGVSPRSVRLHVGL  370 (389)
T ss_pred             ccCCHHHHHhcCCCCCeEEEEecc
Confidence                        125789999987

>PLN02624 ornithine-delta-aminotransferase

Probab=99.73  E-value=1.1e-16  Score=142.34  Aligned_cols=214  Identities=12%  Similarity=0.068  Sum_probs=137.1

Q ss_pred             ChhhhcccCC---CCceEEEEcCCCCCChhhHH---------HhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEe
Q 024997           24 EANLWGNASS---DTHLVEFVTAPNNPDGQMNK---------AVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIF   88 (259)
Q Consensus        24 d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~~---------~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~   88 (259)
                      |++.|++.+.   +++++|++..++||+|.+++         ++|+++|+++|+||+|  |+.....+. +..+...-+.
T Consensus       210 d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv  289 (474)
T PLN02624        210 DLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVV  289 (474)
T ss_pred             CHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEE
Confidence            5677877773   46788899999999998872         8899999999999999  322111111 1111112245


Q ss_pred             ccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 024997           89 TISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKII  168 (259)
Q Consensus        89 S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (259)
                      ++||.+|..++++|+++++ +++++.+.......+.+.+++.+.++.+.++...+   .+    ..+...++.+.+.+.|
T Consensus       290 ~lsK~lggG~~pigav~~~-~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~---~~----l~~~~~~~~~~l~~~L  361 (474)
T PLN02624        290 ILGKALGGGVIPVSAVLAD-KDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQD---EK----LAERSAKLGQELRDQL  361 (474)
T ss_pred             EecccccCCCCcceeeeec-HHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHh---ch----HHHHHHHHHHHHHHHH
Confidence            5799999666999999998 68888876555555668899999999999875311   11    2334444445555555


Q ss_pred             HhcCCCccccccccccccceeeCCCCCeeE-EEecCC--C-chHHHHHHHHHcCeeeecCCcccCCCCeEEEEe--ecCh
Q 024997          169 SLSNRFSLQEIAPQYCTYFKKIRPPSPAYA-WVKCER--E-EDKDCYGILKAAKIIGREGKKFRAEARFVRLSL--LKSQ  242 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~--~~~~  242 (259)
                      +.+..    .++.    .+....+.+.++. +++.+.  . ....+.+.|.++||.+.|+     +.+.+||++  ..++
T Consensus       362 ~~l~~----~~~~----~i~~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p~-----~~~~lR~~p~l~~t~  428 (474)
T PLN02624        362 QKIQK----QFPK----LIKEVRGRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPT-----HDTIIRLAPPLSISE  428 (474)
T ss_pred             HHHHH----hCCC----ceEEEEeeEEEEEEEecCCCcChHHHHHHHHHHHhCCeEEecC-----CCCEEEEECCccCCH
Confidence            44320    0110    0222334444433 232221  1 1223334456789999874     357899996  4599


Q ss_pred             hhHHHHHHHHHHHhhh
Q 024997          243 DDFDLLLHRLDELISK  258 (259)
Q Consensus       243 ~~~~~~~~~l~~~l~~  258 (259)
                      +++++++++|.+++.+
T Consensus       429 e~id~~l~~L~~~l~~  444 (474)
T PLN02624        429 DELQECSKALSDVLEH  444 (474)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998764

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.72  E-value=4.1e-16  Score=135.37  Aligned_cols=218  Identities=15%  Similarity=0.028  Sum_probs=139.0

Q ss_pred             cccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc-cCCCCCCCCCCCCCeEEEecccccc
Q 024997           21 FEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY-FWPHFAPIPAPADEELMIFTISKLT   94 (259)
Q Consensus        21 ~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y-~~~~~~~~~~~~~~~i~~~S~SK~~   94 (259)
                      +.+|+++|++.++++++++++++||||||.+++     ++|+++|+++|+|+++ ++.....+ ...+.++++.|++|.+
T Consensus       123 ~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~-~~~~~D~~~~s~~K~l  201 (376)
T TIGR01977       123 GLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDM-TELAIDMLAFTGHKGL  201 (376)
T ss_pred             CCcCHHHHHHhcCCCCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCc-hhcCCCEEEecccccc
Confidence            457889999999888999999999999999983     8899999999999998 22111111 2345689999999987


Q ss_pred             C-CCcceEEEEEecCHHHHHHHHHh----------------hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 024997           95 G-HAGSRFGWAVIKDEAVYQRMSAY----------------ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTM  157 (259)
Q Consensus        95 g-~~G~R~G~i~~~~~~~~~~~~~~----------------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  157 (259)
                      + ..|  .|.++..++..+..+...                .+.....++.....+...+++...+.    -.+..+++.
T Consensus       202 ~~p~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~----g~~~~~~~~  275 (376)
T TIGR01977       202 LGPQG--TGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKI----GIANIAKKE  275 (376)
T ss_pred             cCCCC--ceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHh----CHHHHHHHH
Confidence            5 345  677766532211111110                00001123333334444455533111    234456777


Q ss_pred             HHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHc-CeeeecCCcccC-------
Q 024997          158 KKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAA-KIIGREGKKFRA-------  229 (259)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-gi~~~~g~~f~~-------  229 (259)
                      ++..+.+.+.|++++++.+..  +       ......+..+++.++..+.+.+.+.|.+. ||.+.+|..+..       
T Consensus       276 ~~l~~~~~~~l~~~~~~~~~~--~-------~~~~~~~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g  346 (376)
T TIGR01977       276 CMLTEKLLNGLREINKVKIYG--P-------ADPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIG  346 (376)
T ss_pred             HHHHHHHHHHHhcCCCeEEeC--C-------CCccccCCeEEEEECCCCHHHHHHHHhccCCEEEEcccccchHHHHHhC
Confidence            888888888888766432211  0       00111234556666655555566666555 999999876642       


Q ss_pred             --CCCeEEEEeec--ChhhHHHHHHHHHH
Q 024997          230 --EARFVRLSLLK--SQDDFDLLLHRLDE  254 (259)
Q Consensus       230 --~~~~~Ris~~~--~~~~~~~~~~~l~~  254 (259)
                        ..+.+|+|+..  +.++++.++++|++
T Consensus       347 ~~~~~~iRis~~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       347 TFATGTIRLSLGYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             CCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence              35789999865  89999999999875

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.72  E-value=6.6e-16  Score=135.53  Aligned_cols=148  Identities=10%  Similarity=0.096  Sum_probs=104.7

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEeccccccCCC
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHA   97 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g~~   97 (259)
                      .|++++++.+++++++|++++|+||||.++     .++|+++|+++|+|++|-.+. ..-+-....++++.|+||.++.+
T Consensus       131 ~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~-~~~p~~~gaDivv~S~tK~l~G~  209 (425)
T PRK06084        131 DDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPV-LCRPFEHGADIVVHSLTKYIGGH  209 (425)
T ss_pred             CCHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccc-cCChhhcCCCEEEECchhccccc
Confidence            478889999988899999999999999998     388999999999999982111 11111234579999999999889


Q ss_pred             cceEEEEEecCHHHH------------------------------HHH----HHhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 024997           98 GSRFGWAVIKDEAVY------------------------------QRM----SAYISLNTMGVSRECQLRAFKLLKVVLE  143 (259)
Q Consensus        98 G~R~G~i~~~~~~~~------------------------------~~~----~~~~~~~~~~~~~~~q~~~~~~l~~~~~  143 (259)
                      |.++|.+++....+.                              ...    .......+...++...+.+.+-      
T Consensus       210 g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrg------  283 (425)
T PRK06084        210 GTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQG------  283 (425)
T ss_pred             ccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcC------
Confidence            999998777421210                              000    0112233455666544433333      


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 024997          144 DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIA  180 (259)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  180 (259)
                         -+.+..+.++.+++...+.+.|++++.+.....|
T Consensus       284 ---l~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP  317 (425)
T PRK06084        284 ---LETLALRMERHTENALKVARYLQQHPQVAWVKYA  317 (425)
T ss_pred             ---cCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence               3467788999999999999999999987644444

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.71  E-value=9.2e-16  Score=134.81  Aligned_cols=209  Identities=12%  Similarity=0.015  Sum_probs=140.7

Q ss_pred             hhhhcccCC-----CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCC--CCC--CCCCCe
Q 024997           25 ANLWGNASS-----DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFA--PIP--APADEE   84 (259)
Q Consensus        25 ~~~l~~~~~-----~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~--~~~--~~~~~~   84 (259)
                      ++.+++.+.     ++..++++...+++.|...         .++|+++|+++|+||+|  |+....  ...  +..+ +
T Consensus       183 ~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~p-D  261 (421)
T PRK06777        183 LSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKP-D  261 (421)
T ss_pred             HHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCC-C
Confidence            344665552     3456655554467777543         28999999999999999  422111  111  1111 2


Q ss_pred             EEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 024997           85 LMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENL  164 (259)
Q Consensus        85 i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (259)
                        +-++||.++ .|+|+||++++ +++++.+.......+++.+++.|.++.+.|+...   .    +...++++++.+++
T Consensus       262 --iv~~sK~l~-~G~pigav~~~-~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~---~----~~l~~~~~~~g~~l  330 (421)
T PRK06777        262 --LITMAKSLG-GGMPISAVVGR-AEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIA---E----EKLCQRALILGAHL  330 (421)
T ss_pred             --EEeeehhhc-CCCceEEEEEc-HHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHH---h----ccHHHHHHHHHHHH
Confidence              348999998 99999999999 7999988766566778899999999999998541   1    23466777777777


Q ss_pred             HHHHHhcCCCccccccccccccceeeCCCCCeeEE-EecCCC---chHH---HHHHHHHcCeeeecCCcccCCCCeEEEE
Q 024997          165 SKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAW-VKCERE---EDKD---CYGILKAAKIIGREGKKFRAEARFVRLS  237 (259)
Q Consensus       165 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~---~~~ll~~~gi~~~~g~~f~~~~~~~Ris  237 (259)
                      .+.|+++..    ..     ..+..+.+.|.++.+ +..+..   +.++   +...+.++||.+.|+..|+   +++||+
T Consensus       331 ~~~L~~l~~----~~-----~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g---~~lr~~  398 (421)
T PRK06777        331 VEVLEKAKA----SC-----PAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHG---NVIRFL  398 (421)
T ss_pred             HHHHHHHHH----hC-----CCeEEecCceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCCC---CEEEEe
Confidence            777776531    00     114455677777654 332211   1222   2233456899999976554   689999


Q ss_pred             ee--cChhhHHHHHHHHHHHhh
Q 024997          238 LL--KSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       238 ~~--~~~~~~~~~~~~l~~~l~  257 (259)
                      +.  .+++++++++++|.+++.
T Consensus       399 ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        399 YPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh
Confidence            84  499999999999998874

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.70  E-value=3.2e-15  Score=131.54  Aligned_cols=217  Identities=12%  Similarity=0.063  Sum_probs=143.9

Q ss_pred             cccChhhhcccCCC-CceEEEEcCCCCCChhhH---HHhhcCCCcEEEeecccc-CCC---CCCCCCCCCCeEEEecccc
Q 024997           21 FEGEANLWGNASSD-THLVEFVTAPNNPDGQMN---KAVLKGPYAKSIYDHAYF-WPH---FAPIPAPADEELMIFTISK   92 (259)
Q Consensus        21 ~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~---~~la~~~~~~vi~De~y~-~~~---~~~~~~~~~~~i~~~S~SK   92 (259)
                      +.+|+++|++.+++ +++++++++++||+..-+   .++|+++|+++|+|++|+ +..   ..... ....+++++|+||
T Consensus       150 ~~~d~~~l~~~i~~~~~k~v~~~~~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~-~~~~di~~~S~~K  228 (416)
T PRK00011        150 GLIDYDEVEKLALEHKPKLIIAGASAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSP-VPHADVVTTTTHK  228 (416)
T ss_pred             CCcCHHHHHHHHHhcCCCEEEECCCcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCC-CCCCcEEEecCCc
Confidence            57889999998854 788888887777754333   488999999999999983 110   01111 1134688999999


Q ss_pred             ccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHH-HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhc
Q 024997           93 LTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRE-CQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLS  171 (259)
Q Consensus        93 ~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~-~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  171 (259)
                      .+  +|.|.||++++++++++.+.........+.+.. .+.++..++...    ....+.+.+++++++++.+.+.|+++
T Consensus       229 ~l--~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~  302 (416)
T PRK00011        229 TL--RGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEA----LEPEFKEYAQQVVKNAKALAEALAER  302 (416)
T ss_pred             CC--CCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence            76  688889999975688888877654433332222 333322233221    12346777889999999999999875


Q ss_pred             CCCccccccccccccceeeC-CCCCeeEEEecCCC--chHHHHHHHHHcCeeeecCC-ccc----CCCCeEEEEe-----
Q 024997          172 NRFSLQEIAPQYCTYFKKIR-PPSPAYAWVKCERE--EDKDCYGILKAAKIIGREGK-KFR----AEARFVRLSL-----  238 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~g~-~f~----~~~~~~Ris~-----  238 (259)
                      +              ++... ...+.++|+.+...  +.+.+.+.|+++||.+..+. .+.    ..+..+|++.     
T Consensus       303 g--------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~  368 (416)
T PRK00011        303 G--------------FRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITT  368 (416)
T ss_pred             C--------------CeeeecCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhh
Confidence            4              22221 12347888888533  45667777888999997432 121    1245789964     


Q ss_pred             -ecChhhHHHHHHHHHHHhhh
Q 024997          239 -LKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       239 -~~~~~~~~~~~~~l~~~l~~  258 (259)
                       +.+.++++.+++.|++++..
T Consensus       369 ~~~t~~di~~l~~~l~~~~~~  389 (416)
T PRK00011        369 RGFKEAEMKEIAELIADVLDN  389 (416)
T ss_pred             cCcCHHHHHHHHHHHHHHHhc
Confidence             22688999999999988654

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.70  E-value=5.2e-16  Score=136.39  Aligned_cols=206  Identities=10%  Similarity=0.023  Sum_probs=135.0

Q ss_pred             hhhcccCC-----CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCC--CCC---CCCCCe
Q 024997           26 NLWGNASS-----DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFA--PIP---APADEE   84 (259)
Q Consensus        26 ~~l~~~~~-----~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~--~~~---~~~~~~   84 (259)
                      +.+++.+.     ++.+++++...++|+|...         .++|+++|+++|+||+|  |+....  ...   ..+|  
T Consensus       184 ~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pD--  261 (421)
T PRK09792        184 DAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPD--  261 (421)
T ss_pred             HHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCc--
Confidence            55666653     3566755555589999765         28999999999999998  422211  111   1222  


Q ss_pred             EEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 024997           85 LMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENL  164 (259)
Q Consensus        85 i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (259)
                        +.||||.++ +|+|+||++++ +++.+.+.......+++.+++.++++.+.++...+   .++++    ++++..+++
T Consensus       262 --i~t~gK~l~-~G~pigav~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~---~~~~~----~~~~~g~~l  330 (421)
T PRK09792        262 --LMTMAKSLA-GGMPLSGVVGN-ANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDK---ESLCE----RANQLGQRL  330 (421)
T ss_pred             --EEEeehhhc-CCCceEEEEEc-HHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHh---hhHHH----HHHHHHHHH
Confidence              789999998 89999999999 79998876555556788999999987777765422   23333    333333344


Q ss_pred             HHHHHhcCCCccccccccccccceeeCCCC-CeeEEEecCCC--------chHHHHHHHHHcCeeeecCCcccCCCCeEE
Q 024997          165 SKIISLSNRFSLQEIAPQYCTYFKKIRPPS-PAYAWVKCERE--------EDKDCYGILKAAKIIGREGKKFRAEARFVR  235 (259)
Q Consensus       165 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~ll~~~gi~~~~g~~f~~~~~~~R  235 (259)
                      .+.|+.+.    ..++      . ...+.| |.++|+.+.+.        ..+.+...+.++||.+.+.   +...+.+|
T Consensus       331 ~~~l~~l~----~~~p------~-v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~---g~~~~~ir  396 (421)
T PRK09792        331 KNTLIDAK----ESVP------A-IAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTC---GAYGNVIR  396 (421)
T ss_pred             HHHHHHHH----HhCC------C-cceecccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeec---CCCCCEEE
Confidence            44443321    0011      0 124455 88999988643        1233444445689998531   22247899


Q ss_pred             EEeec--ChhhHHHHHHHHHHHhhh
Q 024997          236 LSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       236 is~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      |.+..  ++++++++++++.+.+++
T Consensus       397 l~P~l~i~~~ei~~~~~~l~~~l~~  421 (421)
T PRK09792        397 FLYPLTIPDAQFDAAMKILQDALSD  421 (421)
T ss_pred             EeCCCcCCHHHHHHHHHHHHHHHhC
Confidence            99754  899999999999998753

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.70  E-value=1.3e-16  Score=136.84  Aligned_cols=211  Identities=11%  Similarity=0.039  Sum_probs=140.3

Q ss_pred             CCcccchhhhhhccCccc------ccccChhhhcccCCC------CceEEEEcCCCCCChhhH-----HHhhcCCCcEEE
Q 024997            2 PFYPLYQEQTDYFESVDY------KFEGEANLWGNASSD------THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSI   64 (259)
Q Consensus         2 P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi   64 (259)
                      |+|+.+...++..|.++.      ...+|+++|++.+++      +++++++++|+||||.+.     .++|+++|++++
T Consensus       103 ~~h~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~  182 (345)
T cd06450         103 QAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLH  182 (345)
T ss_pred             cchhHHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEE
Confidence            566667777776666542      236888999998865      788889999999999997     389999999999


Q ss_pred             eeccccC---C--CCCC-CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 024997           65 YDHAYFW---P--HFAP-IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLL  138 (259)
Q Consensus        65 ~De~y~~---~--~~~~-~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l  138 (259)
                      +|++|..   +  .... .....+.+.+..|++|.++ ++.++|+++..                    .+.+.++...+
T Consensus       183 vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~-~p~g~g~~~~~--------------------~~~~~~~l~~l  241 (345)
T cd06450         183 VDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGL-VPLGCSAVLVR--------------------ALKLWATLRRF  241 (345)
T ss_pred             EechhhHHHhhChhhHHHhcCccccCEEEEchhHhhC-CCcchHHHHHH--------------------HHHHHHHHHHH
Confidence            9999821   1  1111 1112234667889999775 66677776643                    44444555555


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-----CchHHHHHH
Q 024997          139 KVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-----EEDKDCYGI  213 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l  213 (259)
                      ..       ..+++.+++..++++.+.+.|++++++.+            ...++.+++.|. ++.     .+...+.+.
T Consensus       242 ~~-------~g~~~~~~~~~~~~~~l~~~L~~~~~~~~------------~~~~~~~iv~f~-~~~~~~~~~~~~~i~~~  301 (345)
T cd06450         242 GR-------DGYGEHIDRIVDLAKYLAELIRADPGFEL------------LGEPNLSLVCFR-LKPSVKLDELNYDLSDR  301 (345)
T ss_pred             hH-------HHHHHHHHHHHHHHHHHHHHHhcCCCeEE------------ecCCceeEEEEE-ECCcchhhHHHHHHHHH
Confidence            42       24566778888899999998887664221            113445554443 332     233445555


Q ss_pred             HHHcCeeeecCCcccCCCCeEEEEeec---ChhhHHHHHHHHHH
Q 024997          214 LKAAKIIGREGKKFRAEARFVRLSLLK---SQDDFDLLLHRLDE  254 (259)
Q Consensus       214 l~~~gi~~~~g~~f~~~~~~~Ris~~~---~~~~~~~~~~~l~~  254 (259)
                      |.++|+.+.++..+. .++++|++++.   +.++++.+++.|++
T Consensus       302 L~~~g~~~~~~~~~~-~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         302 LNERGGWHVPATTLG-GPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             HHhcCCEEEEeeEEC-CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            667766666655444 45799999963   77999999998875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.70  E-value=1.2e-15  Score=132.16  Aligned_cols=205  Identities=16%  Similarity=0.096  Sum_probs=128.1

Q ss_pred             ccChhhhcccCC------CCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeecccc----CCCCCCCC---CCCCC
Q 024997           22 EGEANLWGNASS------DTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYF----WPHFAPIP---APADE   83 (259)
Q Consensus        22 ~~d~~~l~~~~~------~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~----~~~~~~~~---~~~~~   83 (259)
                      ..|++.|++.++      +.+.++++++++|++|.+.+     ++|+++|+++++||+|-    ......+.   +..+.
T Consensus       124 ~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~  203 (370)
T PRK05937        124 HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENF  203 (370)
T ss_pred             CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCC
Confidence            367888888774      34667778999999999983     89999999999999992    11221111   12233


Q ss_pred             eEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh--hhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 024997           84 ELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS--LNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRW  161 (259)
Q Consensus        84 ~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  161 (259)
                      .+.+.|+||.+|..|   +.++.. +++.+.+.....  ....+.+++...++.++++...+     .....++++++++
T Consensus       204 ~~~~~tlsK~~g~~G---~~vl~~-~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~-----~~~~~~~~l~~l~  274 (370)
T PRK05937        204 YAVLVTYSKALGSMG---AALLSS-SEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQ-----EGELARKQLFRLK  274 (370)
T ss_pred             cEEEEechhhhhcCc---eEEEcC-HHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHH
Confidence            467899999999878   334555 466665543211  12344566665555555553211     1123456667777


Q ss_pred             HHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-
Q 024997          162 ENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-  240 (259)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-  240 (259)
                      +++.+.|+...                   + +.. .-+.++....+.+.+.|.++||.+..  .+.+..+.+|+|+.. 
T Consensus       275 ~~l~~~l~~~~-------------------~-~~~-~~i~~~~~~~~~~~~~L~~~gi~v~~--~~~~~~~~iRis~~~~  331 (370)
T PRK05937        275 EYFAQKFSSAA-------------------P-GCV-QPIFLPGISEQELYSKLVETGIRVGV--VCFPTGPFLRVNLHAF  331 (370)
T ss_pred             HHHHHhcCCCC-------------------C-CCE-EEEEeCChhHHHHHHHHHHCCeeEEe--eCCCCCCEEEEEcCCC
Confidence            76666654211                   0 000 01223333345667777788998863  223335689999974 


Q ss_pred             -ChhhHHHHHHHHHHHhhh
Q 024997          241 -SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       241 -~~~~~~~~~~~l~~~l~~  258 (259)
                       ++++++.+++.|++++++
T Consensus       332 ~t~edid~l~~~L~~~~~~  350 (370)
T PRK05937        332 NTEDEVDILVSVLATYLEK  350 (370)
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence             999999999999988753

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.70  E-value=1.9e-15  Score=132.07  Aligned_cols=233  Identities=9%  Similarity=0.012  Sum_probs=143.6

Q ss_pred             hhhccCcccc--cccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCC
Q 024997           11 TDYFESVDYK--FEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADE   83 (259)
Q Consensus        11 ~~~~g~~~~~--~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~   83 (259)
                      ....|.++.-  +.+|++.+++++++++++|++.+|+||++.+.     .++|+++|+++|+|++| ..+...-+-...-
T Consensus       121 l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~-~tP~~~~pl~~GA  199 (432)
T PRK06702        121 LRKLGIDVTFFNPNLTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTL-ATPYLCQAFEHGA  199 (432)
T ss_pred             HHHCCCEEEEECCCCCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCC-CchhhCChhhcCC
Confidence            3445766533  34678899999999999999999999999887     38999999999999988 2111111113445


Q ss_pred             eEEEecccc-----ccCCCcceE-----EEEEecCHHHHH----------------------HHHHhhhhhcCCCCHHHH
Q 024997           84 ELMIFTISK-----LTGHAGSRF-----GWAVIKDEAVYQ----------------------RMSAYISLNTMGVSRECQ  131 (259)
Q Consensus        84 ~i~~~S~SK-----~~g~~G~R~-----G~i~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~q  131 (259)
                      +|++.|+||     ..++.|+++     +|...++.++.+                      .........+.+.+++..
T Consensus       200 DIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a  279 (432)
T PRK06702        200 NIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNA  279 (432)
T ss_pred             CEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHH
Confidence            799999999     555667666     455443222221                      111223334568888877


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc-c---ceeeC-CCCCeeEEEecCCCc
Q 024997          132 LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCT-Y---FKKIR-PPSPAYAWVKCEREE  206 (259)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~---~~~~~-~~~~~~~~~~~~~~~  206 (259)
                      +.+.+.|+         .+..+.++.+++...+.+.|++.+.+.....|+.... .   ++... ...|-.+.+.++. +
T Consensus       280 ~l~~rgL~---------Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~-~  349 (432)
T PRK06702        280 YISNIGLE---------TLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKG-G  349 (432)
T ss_pred             HHHHhccC---------cHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecC-C
Confidence            76666665         5667788889999999999999987654444432111 0   11111 1123445666653 3


Q ss_pred             hHHHHHHHHHcCee---eecC----------C--c----------ccCCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          207 DKDCYGILKAAKII---GREG----------K--K----------FRAEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       207 ~~~~~~ll~~~gi~---~~~g----------~--~----------f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      .+.+.+++++-.+.   +.-|          +  +          .+.+.+.+|||++-  |+.+++++-|.+.|
T Consensus       350 ~~~~~~f~~~l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl--Ed~eDLi~Dl~~Al  422 (432)
T PRK06702        350 LEAAKEFIANVKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLSVGI--EDVSDIIADLEAAL  422 (432)
T ss_pred             HHHHHHHHHhCccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHH
Confidence            44455555544332   1111          1  0          01125689999987  34444555555444

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.69  E-value=8.7e-16  Score=134.51  Aligned_cols=216  Identities=13%  Similarity=0.084  Sum_probs=137.7

Q ss_pred             cccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeecccc-CCCCCCCCCCCCCeEEEecccccc
Q 024997           21 FEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYF-WPHFAPIPAPADEELMIFTISKLT   94 (259)
Q Consensus        21 ~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~-~~~~~~~~~~~~~~i~~~S~SK~~   94 (259)
                      +.+|++.|++.++++++++++++|+||||.+.+     ++|+++|+++++|+++- +.....+ .....++++.|..|.+
T Consensus       128 ~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~-~~~~~D~~~~s~~K~~  206 (402)
T TIGR02006       128 GLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINV-NELKVDLMSISGHKIY  206 (402)
T ss_pred             CcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCc-cccCCCEEEEehhhhc
Confidence            457888999999888999999999999999983     89999999999999982 2111122 2335678899999998


Q ss_pred             CCCcceEEEEEecCHHHHHHHHHhhh------hhcCCCCHHHH-HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHH
Q 024997           95 GHAGSRFGWAVIKDEAVYQRMSAYIS------LNTMGVSRECQ-LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKI  167 (259)
Q Consensus        95 g~~G~R~G~i~~~~~~~~~~~~~~~~------~~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
                      |.+|  +|++++.+ +....+.....      ....+.+++.+ .+....++..     ...+....++.++.++.+.+.
T Consensus       207 gp~G--~G~l~~~~-~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~-----~~~~~~~~~~~~~l~~~l~~~  278 (402)
T TIGR02006       207 GPKG--IGALYVRR-KPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIA-----KEEMAQDTAHVLALRDRLLNG  278 (402)
T ss_pred             CCCc--eEEEEEcc-CCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHH
Confidence            8668  89988873 43332221110      11223333333 3344555532     224566677888888888888


Q ss_pred             HHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccC------------------
Q 024997          168 ISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRA------------------  229 (259)
Q Consensus       168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~------------------  229 (259)
                      |+.++++.+..  +        .....+....+.+...+.+.+...+  .++.++.|..+..                  
T Consensus       279 l~~~~~v~~~~--~--------~~~~~p~~~~v~f~~~~~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~  346 (402)
T TIGR02006       279 IKSIEEVYLNG--D--------LEHRVPGNLNVSFNYVEGESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGINDEL  346 (402)
T ss_pred             HhcCCCEEEeC--C--------ccccCCCeEEEEEeCcCHHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCChhh
Confidence            88766432211  0        0111111011222322333333333  5898888876642                  


Q ss_pred             CCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          230 EARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       230 ~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      ..+.+|+|++.  +.++++.+++.|+++++
T Consensus       347 ~~~~vR~S~~~~~t~edid~l~~~l~~~~~  376 (402)
T TIGR02006       347 AHSSIRFTIGRFTTEEEIDYAVKLVKSAID  376 (402)
T ss_pred             cCceEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            13789999976  88999999999988764

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.69  E-value=5.5e-15  Score=128.79  Aligned_cols=209  Identities=13%  Similarity=0.079  Sum_probs=133.1

Q ss_pred             CceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc-c---CCCCCC------CCCCCCCeEEEeccccccCCCcc
Q 024997           35 THLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY-F---WPHFAP------IPAPADEELMIFTISKLTGHAGS   99 (259)
Q Consensus        35 ~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y-~---~~~~~~------~~~~~~~~i~~~S~SK~~g~~G~   99 (259)
                      ++++|++.+|+||+|.+.+     ++|+++|+++|+||+| +   +.....      +....+.++++.|+||.+|..| 
T Consensus       138 ~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~g-  216 (392)
T PLN03227        138 QRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVG-  216 (392)
T ss_pred             CcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhccC-
Confidence            5788899999999999973     8999999999999999 3   111111      1112345899999999987555 


Q ss_pred             eEEEEEecCHHHHHHHHHhhhhhcCCC--CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcc-
Q 024997          100 RFGWAVIKDEAVYQRMSAYISLNTMGV--SRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSL-  176 (259)
Q Consensus       100 R~G~i~~~~~~~~~~~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-  176 (259)
                        |+++++ +++++.+.......+.+.  ++..+.++...+...    . . ..+.+++++++.+++.+.|++.. +.. 
T Consensus       217 --g~v~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~----~-~-~~~~~~~l~~~~~~l~~~L~~~~-~~~~  286 (392)
T PLN03227        217 --GMTVGS-EEVVDHQRLSGSGYCFSASAPPFLAKADATATAGE----L-A-GPQLLNRLHDSIANLYSTLTNSS-HPYA  286 (392)
T ss_pred             --cEEecC-HHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHH----h-c-CHHHHHHHHHHHHHHHHHHHhcC-Cccc
Confidence              999888 799888765544333343  366677776666532    1 1 23467788899999999887522 110 


Q ss_pred             ccccccccccceeeCCCCCeeEEEecCCCc----------hHHHHHHHHHcCeeeecCC-c----cc-CCCCeEEEEeec
Q 024997          177 QEIAPQYCTYFKKIRPPSPAYAWVKCEREE----------DKDCYGILKAAKIIGREGK-K----FR-AEARFVRLSLLK  240 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ll~~~gi~~~~g~-~----f~-~~~~~~Ris~~~  240 (259)
                      ..... +   ........+..+.+.+.+..          ...+.+.+.++|+.+.+.. .    +. .++..+|+++..
T Consensus       287 ~~~rg-~---~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~  362 (392)
T PLN03227        287 LKLRN-R---LVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANA  362 (392)
T ss_pred             ccccc-c---cccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecC
Confidence            00000 0   00011122334445553310          1244455557899887521 1    11 246789999965


Q ss_pred             --ChhhHHHHHHHHHHHhhh
Q 024997          241 --SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       241 --~~~~~~~~~~~l~~~l~~  258 (259)
                        ++++++++++.|++++++
T Consensus       363 ~~t~eei~~~~~~l~~~~~~  382 (392)
T PLN03227        363 SHTREDIDKLLTVLGEAVEA  382 (392)
T ss_pred             CCCHHHHHHHHHHHHHHHHH
Confidence              999999999999998763

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.69  E-value=2.8e-15  Score=130.60  Aligned_cols=225  Identities=10%  Similarity=0.050  Sum_probs=137.8

Q ss_pred             hhhhccCccc--------ccccChhhhcccCC-------CCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc
Q 024997           10 QTDYFESVDY--------KFEGEANLWGNASS-------DTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY   69 (259)
Q Consensus        10 ~~~~~g~~~~--------~~~~d~~~l~~~~~-------~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y   69 (259)
                      .++..|.++.        .+.+|++.+++.++       ++++++++++|+||||.+.+     ++|+++|+++++|++|
T Consensus       118 ~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~  197 (387)
T PRK09331        118 AAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAY  197 (387)
T ss_pred             HHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCc
Confidence            3555666542        24578888988774       36899999999999999973     8999999999999998


Q ss_pred             cCCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhh--------cCCCCHHHHHHHHHHHHH
Q 024997           70 FWPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN--------TMGVSRECQLRAFKLLKV  140 (259)
Q Consensus        70 ~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~q~~~~~~l~~  140 (259)
                      ..+. .++. ...+.+++++|++|.++ .+.++||++++ +++++.+.+.....        ....+.....++...++.
T Consensus       198 ~~g~-~~~~~~~~g~D~~~~s~~K~l~-~~~~~G~l~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~  274 (387)
T PRK09331        198 TVGR-MPVDGKKLGADFIVGSGHKSMA-ASAPSGVLATT-EEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPH  274 (387)
T ss_pred             ccCC-cCCCHHHcCCCEEEeeCccccc-CCCCEEEEEEC-HHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHH
Confidence            3111 1121 23356899999999997 55689999999 68888775542211        111111112222333332


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---------chHHHH
Q 024997          141 VLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---------EDKDCY  211 (259)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~  211 (259)
                      .     .+..+ ..++..++.+.+.+.|++++++.+..  +         .+....++.++.+..         ....+.
T Consensus       275 ~-----~~~~~-~~~~~~~~~~~l~~~L~~l~g~~~~~--~---------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  337 (387)
T PRK09331        275 V-----VERVK-RWDEEVKKARWFVDELEKIEGFKQLG--E---------KPRNHDLMKFETPSFDEIAKKHKRRGFFLY  337 (387)
T ss_pred             H-----HHHHH-HHHHHHHHHHHHHHHHhcCCCEEEec--c---------CcCcCCeEEEeCCchhHHhhhccccchhHH
Confidence            1     11222 34445667778888888775433211  0         011222333333311         123355


Q ss_pred             HHHHHcCeeeecCCcccCCCCeEEEEe-ecChhhHHHHHHHHHHHhhh
Q 024997          212 GILKAAKIIGREGKKFRAEARFVRLSL-LKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       212 ~ll~~~gi~~~~g~~f~~~~~~~Ris~-~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +.|+++||...+    ......+|+.. +.++++++.+++.|++++++
T Consensus       338 ~~L~~~gI~~~~----~~~~~i~ri~~~g~t~~di~~l~~aL~~i~~~  381 (387)
T PRK09331        338 EELKKRGIHGIK----PGATKEFKLSTYGLTWEQVEYVADAFKEIAEK  381 (387)
T ss_pred             HHHHHcCceEEc----cCCceEEEEEeccCCHHHHHHHHHHHHHHHHh
Confidence            566678997432    11235577776 44999999999999988653

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.67  E-value=2.8e-15  Score=131.31  Aligned_cols=206  Identities=13%  Similarity=0.036  Sum_probs=138.1

Q ss_pred             ChhhhcccCC---CCceEEEEcCCCCCChhhHH---------HhhcCCCcEEEeeccc--cCCCCCC--C--CCCCCCeE
Q 024997           24 EANLWGNASS---DTHLVEFVTAPNNPDGQMNK---------AVLKGPYAKSIYDHAY--FWPHFAP--I--PAPADEEL   85 (259)
Q Consensus        24 d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~~---------~la~~~~~~vi~De~y--~~~~~~~--~--~~~~~~~i   85 (259)
                      |++.|++.+.   ++..++++..+++++|.+.+         ++|+++|+++|+||+|  |+.....  .  .+..+ . 
T Consensus       172 d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~-d-  249 (401)
T TIGR01885       172 NLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKP-D-  249 (401)
T ss_pred             CHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCC-C-
Confidence            6777887763   45677777778999998772         7899999999999998  3221111  1  11122 2 


Q ss_pred             EEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 024997           86 MIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLS  165 (259)
Q Consensus        86 ~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (259)
                       +.++||.++..|+|+|+++++ +++++.+.......+.+.+++.+.++.+.++...+   +    ...++.++..+.+.
T Consensus       250 -i~~~gK~l~~g~~~ig~v~~~-~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~---~----~l~~~~~~~~~~~~  320 (401)
T TIGR01885       250 -IVLLGKALSGGVYPVSAVLAD-DDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEE---E----KLAENAEKLGEIFR  320 (401)
T ss_pred             -EEEeeccccCCCCCcEEEEEc-HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh---c----cHHHHHHHHHHHHH
Confidence             235789998666999999999 79998886533444667789999999999885411   1    13456666678888


Q ss_pred             HHHHhcCCCccccccccccccceeeCCCCCeeE-EEecCC--CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--c
Q 024997          166 KIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYA-WVKCER--EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--K  240 (259)
Q Consensus       166 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~  240 (259)
                      +.|++++.           ..+....+.+.++. +++.+.  .....+...|.++||.+.|+     +++.+||+..  .
T Consensus       321 ~~L~~l~~-----------~~~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~~-----~~~~lRi~p~l~~  384 (401)
T TIGR01885       321 DQLKKLPK-----------PIITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKPT-----HGNIIRLAPPLVI  384 (401)
T ss_pred             HHHHhccC-----------CceeEEeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEec-----CCCEEEEeCCccC
Confidence            88876531           11223344555544 233221  12333444455789999773     2478999974  4


Q ss_pred             ChhhHHHHHHHHHHHh
Q 024997          241 SQDDFDLLLHRLDELI  256 (259)
Q Consensus       241 ~~~~~~~~~~~l~~~l  256 (259)
                      +++++++++++|.+++
T Consensus       385 t~~~i~~~l~~l~~~l  400 (401)
T TIGR01885       385 TEEQLDEGLEIIKKVI  400 (401)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999998876

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK14012 cysteine desulfurase; Provisional

Probab=99.67  E-value=4.3e-15  Score=130.26  Aligned_cols=216  Identities=13%  Similarity=0.088  Sum_probs=133.4

Q ss_pred             cccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeecccc-CCCCCCCCCCCCCeEEEecccccc
Q 024997           21 FEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYF-WPHFAPIPAPADEELMIFTISKLT   94 (259)
Q Consensus        21 ~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~-~~~~~~~~~~~~~~i~~~S~SK~~   94 (259)
                      +.+|++.|++.++++++++++++++||||.+++     ++|+++|+++|+|+++- +.....+ ...+..+++.|++|.+
T Consensus       130 g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~-~~~~~D~~~~s~~K~~  208 (404)
T PRK14012        130 GIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDL-SKLKVDLMSFSAHKIY  208 (404)
T ss_pred             CcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCc-ccCCCCEEEEehhhcc
Confidence            457889999999889999999999999999984     88999999999999882 2111122 2234578888999988


Q ss_pred             CCCcceEEEEEecCHHHHHHHHHhhh------hhcCCCCHHHH-HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHH
Q 024997           95 GHAGSRFGWAVIKDEAVYQRMSAYIS------LNTMGVSRECQ-LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKI  167 (259)
Q Consensus        95 g~~G~R~G~i~~~~~~~~~~~~~~~~------~~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
                      |..  ++|++++++ +....+.....      ....+.+...+ .+..++++..     .....+..++.++.++.+.+.
T Consensus       209 gp~--g~G~l~~~~-~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~-----~~~~~~~~~~~~~l~~~l~~~  280 (404)
T PRK14012        209 GPK--GIGALYVRR-KPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIA-----KEEMATENERIRALRDRLWNG  280 (404)
T ss_pred             CCC--ceEEEEEec-CCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHH
Confidence            743  599998884 43322222100      01122222222 2222344321     123444567777777888888


Q ss_pred             HHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccC------------------
Q 024997          168 ISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRA------------------  229 (259)
Q Consensus       168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~------------------  229 (259)
                      |++++++.+.  ..     . .......+++++....  .+.+...|  .++.+..|..|.+                  
T Consensus       281 L~~~~~i~~~--~~-----~-~~~~~~~~~~~~~~~~--~~~~~~~l--~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~  348 (404)
T PRK14012        281 IKDIEEVYLN--GD-----L-EQRVPGNLNVSFNYVE--GESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGLNDEL  348 (404)
T ss_pred             HhcCCCEEEe--CC-----c-cccCCCEEEEEEeCcC--HHHHHHhC--CCeEEEchhhhCCCCCCCCHHHHHcCCChhh
Confidence            8766543221  00     0 0011223345555432  23333334  3777777765532                  


Q ss_pred             CCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          230 EARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       230 ~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      ..+.+|+|+..  ++++++.+++.|+++++
T Consensus       349 ~~~~iRls~~~~~t~~dvd~~~~~l~~~~~  378 (404)
T PRK14012        349 AHSSIRFSLGRFTTEEEIDYAIELVRKSIG  378 (404)
T ss_pred             cCceEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            14789999976  88999999999998765

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.65  E-value=6.4e-16  Score=133.08  Aligned_cols=203  Identities=12%  Similarity=0.026  Sum_probs=131.8

Q ss_pred             cccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc-cCCCCCCCCCCCCCeEEEecccccc
Q 024997           21 FEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY-FWPHFAPIPAPADEELMIFTISKLT   94 (259)
Q Consensus        21 ~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y-~~~~~~~~~~~~~~~i~~~S~SK~~   94 (259)
                      +.+|+++|++.++++++++++++|+||||.+++     ++|+++|+++++|+++ ++.....+ ...+.++++.|.+|.+
T Consensus       124 ~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~-~~~~~D~~~~s~~K~~  202 (353)
T TIGR03235       124 GRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDL-SADRIDLISCSGHKIY  202 (353)
T ss_pred             CcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCccccc-cccCCCEEEeehhhcC
Confidence            457889999999888999999999999999983     8899999999999987 32211122 2345678889999998


Q ss_pred             CCCcceEEEEEecCHHHHHH--HHHhh------hhhcCC-CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 024997           95 GHAGSRFGWAVIKDEAVYQR--MSAYI------SLNTMG-VSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLS  165 (259)
Q Consensus        95 g~~G~R~G~i~~~~~~~~~~--~~~~~------~~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (259)
                      |.+|  +|++++.+ +....  +....      .....+ ++.....+..++++..     ....++..++++++.+.+.
T Consensus       203 gp~g--~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~-----~~~~~~~~~~~~~l~~~l~  274 (353)
T TIGR03235       203 GPKG--IGALVIRK-RGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIA-----RRNAQAWEVKLRAMRNQLR  274 (353)
T ss_pred             CCCc--eEEEEEcc-CcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHH
Confidence            8777  89999884 54322  11100      001112 2333334444455432     1234566788888888888


Q ss_pred             HHHHhcCCCccccccccccccceeeCC---CCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCC---CCeEEEEee
Q 024997          166 KIISLSNRFSLQEIAPQYCTYFKKIRP---PSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAE---ARFVRLSLL  239 (259)
Q Consensus       166 ~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~---~~~~Ris~~  239 (259)
                      +.|++ .++.             ...+   .....+.+.++..+.+.+...|++ +|.+++|..|..+   +.++|.+++
T Consensus       275 ~~l~~-~g~~-------------~~~~~~~~~~~i~~~~~~~~~~~~v~~~L~~-~i~v~~g~~~~~~~~~~~~~l~~~g  339 (353)
T TIGR03235       275 DALQT-LGVK-------------LNGDPAETIPHILNFSIDGVNSEALIVNLRA-DAAVSTGSACSSSKYEPSHVLQAMG  339 (353)
T ss_pred             HHhcc-CCeE-------------EeCCcccccCCEEEEEeCCcCHHHHHHHHhC-CeEEEchhhcCCCCCCCCHHHHHcC
Confidence            88876 3322             2211   112233444455556777777764 9999999999753   347888887


Q ss_pred             cChhhHHH
Q 024997          240 KSQDDFDL  247 (259)
Q Consensus       240 ~~~~~~~~  247 (259)
                      .+++++..
T Consensus       340 ~~~~~~~~  347 (353)
T TIGR03235       340 LDTDRARG  347 (353)
T ss_pred             CCHHHhCc
Confidence            76655443

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.65  E-value=6.8e-15  Score=128.77  Aligned_cols=205  Identities=14%  Similarity=0.077  Sum_probs=131.5

Q ss_pred             ccChhhhcccCC---CCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc-c---CCCCCCCC----CCCCCeE
Q 024997           22 EGEANLWGNASS---DTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY-F---WPHFAPIP----APADEEL   85 (259)
Q Consensus        22 ~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y-~---~~~~~~~~----~~~~~~i   85 (259)
                      ..|++.|++.+.   .+.++|++..-.++.|.+.+     ++|+++|+++|+||+| +   ++......    -..+.+|
T Consensus       233 HND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~i  312 (476)
T PLN02955        233 HCDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDL  312 (476)
T ss_pred             CCCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcE
Confidence            468888888772   34566565556799998873     8999999999999999 2   33322221    2357789


Q ss_pred             EEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhh--cCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 024997           86 MIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN--TMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWEN  163 (259)
Q Consensus        86 ~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (259)
                      +++||||++|..|   ||++++ +++++.+.+.....  +.+.+++.-.++.+.++...   .   -..++++++++.++
T Consensus       313 i~~TLsKA~G~~G---Gfi~gs-~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~---~---~~~~r~~L~~n~~~  382 (476)
T PLN02955        313 CVGTLSKAAGCHG---GFIACS-KKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVAR---K---EKWRRKAIWERVKE  382 (476)
T ss_pred             EEEeCccchhccC---ceeecH-HHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHh---c---CHHHHHHHHHHHHH
Confidence            9999999998888   999999 79999888755432  22333444444545554321   1   12356677777777


Q ss_pred             HHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccC--CCCeEEEEeec
Q 024997          164 LSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRA--EARFVRLSLLK  240 (259)
Q Consensus       164 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~--~~~~~Ris~~~  240 (259)
                      +.+.+   +              +.   ..++++ .+.+... ....+.+.|.++||.+.+......  +...+||+++.
T Consensus       383 fr~~~---G--------------~~---~~sPI~-pI~ig~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA  441 (476)
T PLN02955        383 FKALS---G--------------VD---ISSPII-SLVVGNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSA  441 (476)
T ss_pred             HHHhc---C--------------CC---CCCCEE-EEEeCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCC
Confidence            76631   1              11   112222 2222222 223344455578999987543333  34579999954


Q ss_pred             --ChhhHHHHHHHHHHHhh
Q 024997          241 --SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       241 --~~~~~~~~~~~l~~~l~  257 (259)
                        ++++++.+++.|.++..
T Consensus       442 ~Ht~edId~lv~~L~~~~~  460 (476)
T PLN02955        442 AHTTEDVKKLITALSSCLD  460 (476)
T ss_pred             CCCHHHHHHHHHHHHHHHh
Confidence              99999999999987653

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.65  E-value=1.7e-14  Score=127.37  Aligned_cols=197  Identities=13%  Similarity=0.070  Sum_probs=127.0

Q ss_pred             CCceEEEEcCCCCCChhhHH---------HhhcCCCcEEEeeccc--cCCCCC--CC--CCCCCCeEEEeccccccCCCc
Q 024997           34 DTHLVEFVTAPNNPDGQMNK---------AVLKGPYAKSIYDHAY--FWPHFA--PI--PAPADEELMIFTISKLTGHAG   98 (259)
Q Consensus        34 ~~~~~i~i~~p~NPtG~~~~---------~la~~~~~~vi~De~y--~~~~~~--~~--~~~~~~~i~~~S~SK~~g~~G   98 (259)
                      ++++++++..-+||+|.+++         ++|+++|+++|+||+|  |+....  ..  .+..+.   +-++||.++ +|
T Consensus       203 ~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pD---iitlsK~l~-~G  278 (443)
T PRK08360        203 EGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPD---IITLGKPLG-GG  278 (443)
T ss_pred             CCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCC---EEEeccccc-CC
Confidence            46777555544699998872         7899999999999999  422111  11  122222   237899999 99


Q ss_pred             ceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 024997           99 SRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQE  178 (259)
Q Consensus        99 ~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  178 (259)
                      +|+||++++ +++.+.+.......+.+.+++.|.++.+.++...+   ++.    .++++++-+++.+.|+++..    .
T Consensus       279 ~pigav~~~-~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~---~~l----~~~~~~~g~~l~~~L~~l~~----~  346 (443)
T PRK08360        279 LPISATIGR-AEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEE---KNL----LKRAEKLGNYTKKRLEEMKK----K  346 (443)
T ss_pred             ceeEEEEEc-HHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHH---cCH----HHHHHHHHHHHHHHHHHHHH----h
Confidence            999999999 79999887655556788899999999999986522   223    44555555555555554320    0


Q ss_pred             ccccccccceeeCCCCCeeEEEecCC------Cc---hHHHHHHHHHcCeeeecCCcccCCCCeEEEEe--ecChhhHHH
Q 024997          179 IAPQYCTYFKKIRPPSPAYAWVKCER------EE---DKDCYGILKAAKIIGREGKKFRAEARFVRLSL--LKSQDDFDL  247 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~--~~~~~~~~~  247 (259)
                      .     ..+..+... |..+-+.+..      .+   ...+...+.++||.+.+.     ..+.+|++.  ..+++++++
T Consensus       347 ~-----~~v~~vrg~-Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~~lr~~P~l~~t~~~id~  415 (443)
T PRK08360        347 H-----ELIGDVRGI-GLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFF-----SGNVLRIQPPLTIEKEVLDE  415 (443)
T ss_pred             C-----CCeeeeecc-ceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeec-----CCCEEEEeCCCCCCHHHHHH
Confidence            0     002223333 3333333321      01   123444455789988652     237899965  449999999


Q ss_pred             HHHHHHHHhh
Q 024997          248 LLHRLDELIS  257 (259)
Q Consensus       248 ~~~~l~~~l~  257 (259)
                      +++++.+.++
T Consensus       416 ~~~~l~~~l~  425 (443)
T PRK08360        416 GLDILEEAIE  425 (443)
T ss_pred             HHHHHHHHHH
Confidence            9999998875

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.64  E-value=6e-15  Score=127.31  Aligned_cols=221  Identities=14%  Similarity=0.178  Sum_probs=140.6

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCC-cEEEeeccccCCCCCCCCCCCCCeEEEecccccc-C
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPY-AKSIYDHAYFWPHFAPIPAPADEELMIFTISKLT-G   95 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~-~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~-g   95 (259)
                      -|.++|++++++++++|++.+|+||+..+.     .++|+++| +++|+|+.+- .....-+-..+.++++.|.||.+ |
T Consensus       128 ~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~a-tp~~~~pL~~GaDivv~S~TKyl~G  206 (386)
T PF01053_consen  128 TDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFA-TPYNQNPLELGADIVVHSATKYLSG  206 (386)
T ss_dssp             TSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTT-HTTTC-GGGGT-SEEEEETTTTTTT
T ss_pred             hhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeecccc-ceeeeccCcCCceEEEeeccccccC
Confidence            367889999999999999999999999998     38999998 9999999882 11111111234689999999999 4


Q ss_pred             CCcceEEEEEecC-HHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024997           96 HAGSRFGWAVIKD-EAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRF  174 (259)
Q Consensus        96 ~~G~R~G~i~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  174 (259)
                      ...+-.|.+++.+ +++.+.++......+...++..-+.+.+-++         .+..+.++..++...+.+.|++.+.+
T Consensus       207 hsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~---------Tl~~R~~~~~~nA~~lA~~L~~hp~V  277 (386)
T PF01053_consen  207 HSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLR---------TLPLRMERQNENAEALAEFLEEHPKV  277 (386)
T ss_dssp             SSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHT---------THHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred             CcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCC---------cHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            5666678888775 5888888887777777777776665555554         67778999999999999999999876


Q ss_pred             ccccccccccc----cceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCccc----------------------
Q 024997          175 SLQEIAPQYCT----YFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFR----------------------  228 (259)
Q Consensus       175 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~----------------------  228 (259)
                      .....|....+    .++.....+|-.+.+.++.. .+.+..+++.-.+.. .|.++|                      
T Consensus       278 ~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~-~~~~~~f~~~l~l~~-~~~SlGg~~SLi~~p~~~~h~~~~~e~~  355 (386)
T PF01053_consen  278 KRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGG-EEAARRFLDALKLFS-IAPSLGGVESLISHPASTSHRSLSPEER  355 (386)
T ss_dssp             EEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSH-HHHHHHHHHH-SSSE-ESSS-SSSS-EEEETTCTTTTTSCHHHH
T ss_pred             CeEEEcccccccceeeeeecccccCceeEEEeccc-hhhhHhHHhhhhhHh-hhhhcCCcccccccccchhhccCChhhh
Confidence            54443321111    01222223333666777653 245666666555421 121121                      


Q ss_pred             ----CCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          229 ----AEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       229 ----~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                          ..++.+|+|++-  |+.+++++-|.+.|+
T Consensus       356 ~~~Gi~~~liRlSvGl--Ed~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  356 AEAGISDGLIRLSVGL--EDPDDLIADLEQALE  386 (386)
T ss_dssp             HHTTS-TTEEEEE--S--S-HHHHHHHHHHHHH
T ss_pred             hccCCCCCeeEEEecc--CCHHHHHHHHHHhcC
Confidence                125789999987  555666666666653

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.62  E-value=4.6e-14  Score=124.11  Aligned_cols=234  Identities=13%  Similarity=0.114  Sum_probs=141.5

Q ss_pred             hhhccCcccccc-cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCe
Q 024997           11 TDYFESVDYKFE-GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEE   84 (259)
Q Consensus        11 ~~~~g~~~~~~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~   84 (259)
                      +...|..+..+. .|++.+++.+++++++|++++|+||||.+.     .++|+++|+++|+|+++..+. ...+...+.+
T Consensus       123 ~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~-~~~pl~~gaD  201 (427)
T PRK05994        123 FKSFGWQVRWADADDPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPY-LIRPIEHGAD  201 (427)
T ss_pred             HHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccc-cCCccccCCc
Confidence            344555543333 367889999988999999999999999997     388999999999999983111 1111123557


Q ss_pred             EEEeccccccCCCcceEEEEEecCHH-----------------------HHHHHH----------HhhhhhcCCCCHHHH
Q 024997           85 LMIFTISKLTGHAGSRFGWAVIKDEA-----------------------VYQRMS----------AYISLNTMGVSRECQ  131 (259)
Q Consensus        85 i~~~S~SK~~g~~G~R~G~i~~~~~~-----------------------~~~~~~----------~~~~~~~~~~~~~~q  131 (259)
                      +++.|++|.+|.+|-.+|.+++....                       +.+.+.          ......+...++...
T Consensus       202 ivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A  281 (427)
T PRK05994        202 IVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNA  281 (427)
T ss_pred             EEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHH
Confidence            99999999998777666755542111                       221111          112233445566544


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc-c---ceee-CCCCCeeEEEecCCCc
Q 024997          132 LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCT-Y---FKKI-RPPSPAYAWVKCEREE  206 (259)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~---~~~~-~~~~~~~~~~~~~~~~  206 (259)
                      +.+..-         -+.+..+.++.+++...+.+.|++.+.+.....|+.... +   +... ....|-.+.++++. +
T Consensus       282 ~l~~~~---------l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~sf~l~~-~  351 (427)
T PRK05994        282 FLILTG---------IETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTFGLKG-G  351 (427)
T ss_pred             HHHHcC---------cccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhcCCCceEEEEEEecC-C
Confidence            433333         346777899999999999999999998765555542121 1   1111 12234455666653 3


Q ss_pred             hHHHHHHHHHcCee---eecCCc----------------------ccCCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          207 DKDCYGILKAAKII---GREGKK----------------------FRAEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       207 ~~~~~~ll~~~gi~---~~~g~~----------------------f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      .+...++++.-.+.   +..|..                      .+.+++.+|||++-  |+.+++++-|.+.|+
T Consensus       352 ~~~~~~~~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl--E~~~dli~dl~~Al~  425 (427)
T PRK05994        352 YEAGVKLVSSLKLFSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVRLSIGI--EDVDDIIADLEQALA  425 (427)
T ss_pred             HHHHHHHHHhCCcceeccccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCcEEEEecc--CCHHHHHHHHHHHHh
Confidence            45555666554442   222211                      01124689999987  344555555555554

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.62  E-value=1.6e-14  Score=127.57  Aligned_cols=200  Identities=11%  Similarity=0.022  Sum_probs=127.9

Q ss_pred             CceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEeccccccCCCcceE
Q 024997           35 THLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFTISKLTGHAGSRF  101 (259)
Q Consensus        35 ~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~  101 (259)
                      +..+ ++..| ..-.|.+.         .++|++||+++|+||+|  |+.....+. ...+....+.|+||.+| .|+++
T Consensus       207 ~~aa-vi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg-~G~pi  284 (433)
T PRK08117        207 EVAA-VIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIA-SGLPL  284 (433)
T ss_pred             cEEE-EEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCEeehhhhcc-CCCcc
Confidence            4556 55555 44455554         28999999999999999  432221211 11122223579999998 89999


Q ss_pred             EEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Q 024997          102 GWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAP  181 (259)
Q Consensus       102 G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  181 (259)
                      |+++++ +++.+.+.......+.+.+++.++++.+.|+...   .++    ..+.++++.+++.+.|+++..    .++ 
T Consensus       285 gav~~~-~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~---~~~----l~~~~~~~g~~l~~~L~~l~~----~~~-  351 (433)
T PRK08117        285 SAVVAS-KELMEQWPLGSHGTTFGGNPVACAAALATLEVIK---EEK----LLDNANEMGAYALERLEVLKE----KHP-  351 (433)
T ss_pred             eeEEEc-HHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH---hcc----HHHHHHHHHHHHHHHHHHHHh----cCC-
Confidence            999999 7999888655555567889999999999998541   112    344555556666666665431    000 


Q ss_pred             cccccceeeCCCCCeeEEEecCCC-------chHHHHHHHHHcCeeeecCCcccCCCCeEEEEe--ecChhhHHHHHHHH
Q 024997          182 QYCTYFKKIRPPSPAYAWVKCERE-------EDKDCYGILKAAKIIGREGKKFRAEARFVRLSL--LKSQDDFDLLLHRL  252 (259)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~--~~~~~~~~~~~~~l  252 (259)
                          .+.. ....|.++.+.+...       ....+...+.++||.+.+.   +...+.+|+++  ..+++++++++++|
T Consensus       352 ----~~~~-vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---g~~~~~lRl~p~~~~t~~~i~~~~~~l  423 (433)
T PRK08117        352 ----VIGD-VRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLC---GNAGNVLRMIPPLTVTKEEIDEGLDIL  423 (433)
T ss_pred             ----ceee-eecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeec---CCCCCEEEEeCCccCCHHHHHHHHHHH
Confidence                0111 223345555555211       1234445566789988762   22357999995  45999999999999


Q ss_pred             HHHhh
Q 024997          253 DELIS  257 (259)
Q Consensus       253 ~~~l~  257 (259)
                      .++++
T Consensus       424 ~~~l~  428 (433)
T PRK08117        424 DEALT  428 (433)
T ss_pred             HHHHH
Confidence            98875

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.62  E-value=4.5e-14  Score=120.79  Aligned_cols=183  Identities=12%  Similarity=0.097  Sum_probs=123.5

Q ss_pred             hhhhcccCC-CCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEecccccc-CCC
Q 024997           25 ANLWGNASS-DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLT-GHA   97 (259)
Q Consensus        25 ~~~l~~~~~-~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~-g~~   97 (259)
                      .+++++.+. +++++|++.+|+||+-.+.     .++|+++|+.+|+|+.|..| ...-+-..+-+|++.|.||.+ |..
T Consensus       138 ~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP-~~q~PL~~GaDIVvhSaTKyl~GHs  216 (396)
T COG0626         138 DEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP-VLQRPLELGADIVVHSATKYLGGHS  216 (396)
T ss_pred             hHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc-cccChhhcCCCEEEEeccccccCCc
Confidence            335566665 6999999999999999998     48999999999999998311 111111234689999999999 567


Q ss_pred             cceEEEEEecCHHHHHHHHHhhh-hhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 024997           98 GSRFGWAVIKDEAVYQRMSAYIS-LNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSL  176 (259)
Q Consensus        98 G~R~G~i~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  176 (259)
                      .+=.|.++++++++.+.+..... ..+...++...+...+.++         .+..+.++..++...+.+.|++.+.+..
T Consensus       217 Dvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlk---------TL~~Rm~~~~~nA~~IA~~L~~~p~V~~  287 (396)
T COG0626         217 DVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLR---------TLALRMERHNENALKIAEFLADHPKVKK  287 (396)
T ss_pred             ceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccc---------hHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            78888777675667776644444 4677788877766555554         6777899999999999999999887654


Q ss_pred             ccccccccc----cceeeCCCCCeeEEEecCCCchHHHHHHHHHcCe
Q 024997          177 QEIAPQYCT----YFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKI  219 (259)
Q Consensus       177 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi  219 (259)
                      ...|.....    .++......|-.+.+.+...  +.+.+++++-.+
T Consensus       288 V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~--~~~~~f~~~L~l  332 (396)
T COG0626         288 VYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE--EAAKKFLDSLKL  332 (396)
T ss_pred             EECCCCCCCCcHHHHHHhcCCCceEEEEEeCCh--HHHHHHHHhCCc
Confidence            444431111    12211111344445556542  555556555444

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.61  E-value=1.1e-13  Score=121.38  Aligned_cols=215  Identities=12%  Similarity=0.029  Sum_probs=141.0

Q ss_pred             cccChhhhcccCCCCceEEEEcCCCCCChhhH----HHhhcCCCcEEEeecccc----CCCCCC--CCCCCCCeEEEecc
Q 024997           21 FEGEANLWGNASSDTHLVEFVTAPNNPDGQMN----KAVLKGPYAKSIYDHAYF----WPHFAP--IPAPADEELMIFTI   90 (259)
Q Consensus        21 ~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~----~~la~~~~~~vi~De~y~----~~~~~~--~~~~~~~~i~~~S~   90 (259)
                      ..+|.+++++.+++.++.++++..+|-++..-    .++|+++|+++++|+++.    ......  .....+.+++++|+
T Consensus       205 g~iD~d~l~~~~~~~~plvii~g~S~~~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~  284 (493)
T PRK13580        205 GLLDYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTT  284 (493)
T ss_pred             CccCHHHHHHHHhhcCCEEEEeCccccCCCcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCC
Confidence            35788999999988777778888887755332    389999999999999993    111100  00123457999999


Q ss_pred             cccc-CCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHH
Q 024997           91 SKLT-GHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIIS  169 (259)
Q Consensus        91 SK~~-g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  169 (259)
                      +|++ |..|   |++++. +++++.+.........++.++..++.+..+....    .....+.++++.++.+.+.+.|.
T Consensus       285 hKaL~GP~G---G~I~~~-~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~----~~ef~~y~~~l~~Na~~La~~L~  356 (493)
T PRK13580        285 HKTLRGPRG---GLVLAK-KEYADAVDKGCPLVLGGPLPHVMAAKAVALAEAR----TPEFQKYAQQVVDNARALAEGFL  356 (493)
T ss_pred             hhhccCCCe---EEEEec-HHHHHHHhhCCCcccCCCccHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHHHHHHH
Confidence            9998 5445   999998 6999988544333333344444444444444321    11235568899999999999998


Q ss_pred             hcCCCccccccccccccceeeC-CCCCeeEEEecCCCc--hHHHHHHHHHcCeeeecCCccc-C-C---CCeEEEEeec-
Q 024997          170 LSNRFSLQEIAPQYCTYFKKIR-PPSPAYAWVKCEREE--DKDCYGILKAAKIIGREGKKFR-A-E---ARFVRLSLLK-  240 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~ll~~~gi~~~~g~~f~-~-~---~~~~Ris~~~-  240 (259)
                      +.+              +.... ....-.+++++.+.+  ...+.+.|.+.||.+.+-.... + +   +..+||++.. 
T Consensus       357 ~~G--------------~~vv~ggTdshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~  422 (493)
T PRK13580        357 KRG--------------ARLVTGGTDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPAL  422 (493)
T ss_pred             hcC--------------CCccCCCCCCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchh
Confidence            766              22211 112234566665542  3467778889999886533222 1 2   4679999743 


Q ss_pred             -----ChhhHHHHHHHHHHHhh
Q 024997          241 -----SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       241 -----~~~~~~~~~~~l~~~l~  257 (259)
                           ++++++++.+.|.+++.
T Consensus       423 ttrg~teedi~~iad~l~~~l~  444 (493)
T PRK13580        423 TTLGMGSDEMDEVAELIVKVLS  444 (493)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHH
Confidence                 57899999999988765

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.61  E-value=8e-14  Score=120.59  Aligned_cols=195  Identities=10%  Similarity=0.040  Sum_probs=131.6

Q ss_pred             ccCccccc-ccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCC--CcEEEeeccccCCCCCCCCCCCCCeE
Q 024997           14 FESVDYKF-EGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGP--YAKSIYDHAYFWPHFAPIPAPADEEL   85 (259)
Q Consensus        14 ~g~~~~~~-~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~--~~~vi~De~y~~~~~~~~~~~~~~~i   85 (259)
                      .|.++.-+ ..|.+.+++.+++++++|++.+|+||+|.+.     .++|+++  |+++++|+++-.+.. .-+...+-++
T Consensus       125 ~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~pl~~GaDi  203 (395)
T PRK08114        125 LGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-FKALDFGIDI  203 (395)
T ss_pred             cCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-cCHHHcCCcE
Confidence            45544333 2467889999998999999999999999998     3888887  499999998821211 1113446789


Q ss_pred             EEecccccc-CCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 024997           86 MIFTISKLT-GHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENL  164 (259)
Q Consensus        86 ~~~S~SK~~-g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (259)
                      ++.|.+|.+ |.+++-.|.++.. ++..+.++......+...++..-+.+.+.         -+.+.-++++..++...+
T Consensus       204 vv~S~tKyl~Ghsdv~~G~v~~~-~~~~~~l~~~~~~~G~~~~p~~a~l~~rg---------l~TL~lR~~~~~~na~~v  273 (395)
T PRK08114        204 SIQAGTKYLVGHSDAMIGTAVAN-ARCWEQLRENSYLMGQMVDADTAYMTSRG---------LRTLGVRLRQHEESSLKV  273 (395)
T ss_pred             EEEcCcccccCCCcceeEEEEcC-HHHHHHHHHHHHhccCCCCHHHHHHHHcC---------CCcHHHHHHHHHHHHHHH
Confidence            999999977 5556888977777 57777777666666677777655544333         346778899999999999


Q ss_pred             HHHHHhcCCCccccccccccc----cceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCe
Q 024997          165 SKIISLSNRFSLQEIAPQYCT----YFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKI  219 (259)
Q Consensus       165 ~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi  219 (259)
                      .+.|+..+.+.....|.....    .++......|-.+.+.++.. +.+.+.++++.-.+
T Consensus       274 a~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~f~~~l~l  333 (395)
T PRK08114        274 AEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSL  333 (395)
T ss_pred             HHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHHHHHHhCCc
Confidence            999999987654444431111    01111122344555666542 24555566655444

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.60  E-value=1.2e-13  Score=116.95  Aligned_cols=141  Identities=12%  Similarity=0.125  Sum_probs=111.2

Q ss_pred             hhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEecccccc-CCCc
Q 024997           25 ANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLT-GHAG   98 (259)
Q Consensus        25 ~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G   98 (259)
                      ++.+++.+.++++++++.+|.||+..+.     .++|+++|+++|+|+.+ ++....-+-..+-+|++.|.+|.+ |.+.
T Consensus       152 ~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf-~~p~~~~pL~lGADIV~hSaTKyi~Ghsd  230 (409)
T KOG0053|consen  152 LKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTF-GSPYNQDPLPLGADIVVHSATKYIGGHSD  230 (409)
T ss_pred             HHHHHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCc-CcccccChhhcCCCEEEEeeeeeecCCcc
Confidence            4567777788999999999999999998     49999999999999988 222111111234689999999999 5788


Q ss_pred             ceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 024997           99 SRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFS  175 (259)
Q Consensus        99 ~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  175 (259)
                      +-.|.++...+++...++..+..+.++.+++.-....+         +-..+.-+.++..++...+...|++.+.+.
T Consensus       231 vi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~R---------glktl~lRi~~~~ena~~~A~~Le~~~~v~  298 (409)
T KOG0053|consen  231 VIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSR---------GLKTLHLRINKHSENALKIALLLEAHPKVK  298 (409)
T ss_pred             eeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhc---------CcchhhhhHHHHHHHHHHHHHHhhhCCcee
Confidence            88899998657999999999998889999975443333         444677778888999999999999887654

>PLN02651 cysteine desulfurase

Probab=99.60  E-value=1.9e-14  Score=124.51  Aligned_cols=207  Identities=15%  Similarity=0.099  Sum_probs=131.9

Q ss_pred             cccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccccCCCCCCCC-CCCCCeEEEecccccc
Q 024997           21 FEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYFWPHFAPIP-APADEELMIFTISKLT   94 (259)
Q Consensus        21 ~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~~~~~~~~~-~~~~~~i~~~S~SK~~   94 (259)
                      +.+|+++|++.++++++++++++++||||.+++     ++|+++|+++++|.++..+. .++. ...+.++++.|..|.+
T Consensus       124 ~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~-~~~~~~~~~~D~~~~s~hK~~  202 (364)
T PLN02651        124 GLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGK-IPVDVDDLGVDLMSISGHKIY  202 (364)
T ss_pred             CcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCC-cccCcccCCCCEEEechhhhC
Confidence            357888999999889999999999999999983     89999999999999883111 1221 3445699999999976


Q ss_pred             CCCcceEEEEEecCHHHHHHHHHhhh------hhcCC-CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHH
Q 024997           95 GHAGSRFGWAVIKDEAVYQRMSAYIS------LNTMG-VSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKI  167 (259)
Q Consensus        95 g~~G~R~G~i~~~~~~~~~~~~~~~~------~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
                      |..|  +|++++.+ +..+.+.....      ....+ ++.....++.++++...     ...++..++.++..+++.+.
T Consensus       203 gp~G--~g~l~v~~-~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~-----~~~~~i~~~~~~l~~~l~~~  274 (364)
T PLN02651        203 GPKG--VGALYVRR-RPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAM-----KEMDYDEKHMKALRERLLNG  274 (364)
T ss_pred             CCCc--eEEEEEcC-CCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHH
Confidence            6556  89999884 55544332211      01122 33334444555555421     12355677788888888888


Q ss_pred             HHh-cCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCC----------------
Q 024997          168 ISL-SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAE----------------  230 (259)
Q Consensus       168 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~----------------  230 (259)
                      |++ ++++.+..  +     .. .....+..+.+.++..+.+.+...|.+  |.++.|..+..+                
T Consensus       275 l~~~~~~~~i~~--~-----~~-~~~~~~~i~~~~~~~~~~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~  344 (364)
T PLN02651        275 LRAKLGGVRVNG--P-----RD-PEKRYPGTLNLSFAYVEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVPEE  344 (364)
T ss_pred             HHhhCCCEEEEC--C-----CC-cccCcCCEEEEEeCCCCHHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChH
Confidence            764 44432211  0     00 001112244445565556666666654  999999866422                


Q ss_pred             --CCeEEEEeec--ChhhHH
Q 024997          231 --ARFVRLSLLK--SQDDFD  246 (259)
Q Consensus       231 --~~~~Ris~~~--~~~~~~  246 (259)
                        .+.+|+|++.  +.++++
T Consensus       345 ~~~~~vR~S~~~~~t~~did  364 (364)
T PLN02651        345 MAHGSLRLGVGRFTTEEEVD  364 (364)
T ss_pred             HhCceEEEEcCCCCCHHHcC
Confidence              3789999976  666653

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.59  E-value=9.5e-14  Score=122.09  Aligned_cols=200  Identities=13%  Similarity=0.042  Sum_probs=130.6

Q ss_pred             CceEEEEcCC--CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEeccccccCCCcce
Q 024997           35 THLVEFVTAP--NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFTISKLTGHAGSR  100 (259)
Q Consensus        35 ~~~~i~i~~p--~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R  100 (259)
                      +..+ ++..|  +| +|...         .++|+++|+++|+||+|  |+.....+. ...+.+..+.|+||.++ .|++
T Consensus       198 ~iaa-vi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~-~G~p  274 (425)
T PRK07495        198 RVAA-IIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLA-GGFP  274 (425)
T ss_pred             ceEE-EEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEeehhhhc-CCcc
Confidence            4555 55555  34 66442         28999999999999998  432221111 22334556899999998 8999


Q ss_pred             EEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 024997          101 FGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIA  180 (259)
Q Consensus       101 ~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  180 (259)
                      +|+++++ +++.+.+.......+++.+++.++++.+.++...++   +    ..+.+++..+++.+.|+.+..    .++
T Consensus       275 igav~~~-~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~---~----l~~~~~~~g~~l~~~L~~l~~----~~~  342 (425)
T PRK07495        275 LAAVTGR-AEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEE---D----LCERANQLGNRLKQRLASLRE----TVP  342 (425)
T ss_pred             ceEEEEc-HHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhc---h----HHHHHHHHHHHHHHHHHHHHh----hCC
Confidence            9999999 799988866555677889999999888888754221   2    244455555555555554321    111


Q ss_pred             ccccccceeeCCCCCeeEEEecCCC-----c---hHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHHHHH
Q 024997          181 PQYCTYFKKIRPPSPAYAWVKCERE-----E---DKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDLLLH  250 (259)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~~~~  250 (259)
                      .     +..+... |+++|+.+...     +   ...+...+.++|+.+.+.   +...+.+||...  .++++++++++
T Consensus       343 ~-----i~~vrG~-Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---g~~~~~~r~~Ppl~it~~~id~~~~  413 (425)
T PRK07495        343 E-----IADIRGP-GFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTC---GVHGNVIRFLAPITIQDDVFAEALD  413 (425)
T ss_pred             C-----eeeeecC-ceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeec---CCCCCEEEEeCCCccCHHHHHHHHH
Confidence            0     2222333 78888887432     1   123444455789998652   222478999964  39999999999


Q ss_pred             HHHHHhhh
Q 024997          251 RLDELISK  258 (259)
Q Consensus       251 ~l~~~l~~  258 (259)
                      +|.+.+++
T Consensus       414 ~l~~~l~~  421 (425)
T PRK07495        414 ILEASILE  421 (425)
T ss_pred             HHHHHHHH
Confidence            99998763

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=99.59  E-value=7.8e-14  Score=112.73  Aligned_cols=235  Identities=13%  Similarity=0.114  Sum_probs=156.3

Q ss_pred             CCCcccchhhhhhccCcc---cc-c-----ccChhhhcccCC--CCceEEEEcC-CCCCChhhH--------HHhhcCCC
Q 024997            1 MPFYPLYQEQTDYFESVD---YK-F-----EGEANLWGNASS--DTHLVEFVTA-PNNPDGQMN--------KAVLKGPY   60 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~---~~-~-----~~d~~~l~~~~~--~~~~~i~i~~-p~NPtG~~~--------~~la~~~~   60 (259)
                      +|+|+++..+++..|.+.   +. |     .+|.+.+.+.+.  +...++++.. .|||||.-.        .+..++.+
T Consensus       132 nPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~  211 (410)
T KOG1412|consen  132 NPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKN  211 (410)
T ss_pred             CCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcC
Confidence            599999999999999653   22 2     677777776662  3333434444 599999887        26667889


Q ss_pred             cEEEeeccc--cCC-CCC----C---CCCCCCCeEEEeccccccCCCcceEEEEEe--cCHHHHHH----HHHhhhhhcC
Q 024997           61 AKSIYDHAY--FWP-HFA----P---IPAPADEELMIFTISKLTGHAGSRFGWAVI--KDEAVYQR----MSAYISLNTM  124 (259)
Q Consensus        61 ~~vi~De~y--~~~-~~~----~---~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~--~~~~~~~~----~~~~~~~~~~  124 (259)
                      .+.+.|-+|  |+. ...    .   +.......+++.||+|-||+.+=|+|-+..  .++..+..    |....+....
T Consensus       212 lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~S  291 (410)
T KOG1412|consen  212 LFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWS  291 (410)
T ss_pred             ceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccC
Confidence            999999999  421 110    0   113345689999999999999999997543  43455544    4445555567


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc-ceeeCCCCCeeEEEecC
Q 024997          125 GVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTY-FKKIRPPSPAYAWVKCE  203 (259)
Q Consensus       125 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  203 (259)
                      .++.....++...|+.+.  ..++| .+..+.+..|...++..|.+..       ...+.+. |..+.-+.|+|.+-.+ 
T Consensus       292 NPPAyGArIV~kvL~tP~--lre~W-~~sik~MssRI~~MR~aLrd~L-------~aL~TPGtWDHI~~QiGMFSyTGL-  360 (410)
T KOG1412|consen  292 NPPAYGARIVHKVLSTPE--LREQW-IQSIKTMSSRIKKMRTALRDHL-------VALKTPGTWDHITQQIGMFSYTGL-  360 (410)
T ss_pred             CCcchhhHHHHHHhcCHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHH-------HhcCCCCcHHHHHhhccceeecCC-
Confidence            777777888888887541  12223 2223344444444444444211       1111122 6666778899988666 


Q ss_pred             CCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHhh
Q 024997          204 REEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       204 ~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l~  257 (259)
                        ....+..+.++++|.+.+     .|    ||+++. ...++++..++|.+.+.
T Consensus       361 --tp~qV~~li~~h~vyLl~-----~G----RInisGLN~~NveyVAkAIde~Vr  404 (410)
T KOG1412|consen  361 --TPAQVDHLIENHKVYLLS-----DG----RINISGLNMKNVEYVAKAIDETVR  404 (410)
T ss_pred             --CHHHHHHHHHhceEEEec-----CC----cEeeeccccccHHHHHHHHHHHHH
Confidence              578899999999999987     45    999987 78888888888877654

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.58  E-value=1.2e-13  Score=116.82  Aligned_cols=216  Identities=16%  Similarity=0.112  Sum_probs=154.9

Q ss_pred             ccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc-cCCCCCCCCCCCCCeEEEeccccccC
Q 024997           22 EGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY-FWPHFAPIPAPADEELMIFTISKLTG   95 (259)
Q Consensus        22 ~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y-~~~~~~~~~~~~~~~i~~~S~SK~~g   95 (259)
                      .+|+++|++++++++.++.+...||-||.+.+     ++|+++++++.+|-++ ++.-...+ ....-++...|-.|+.|
T Consensus       128 ~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~-~~~~vD~ls~SaHK~~G  206 (386)
T COG1104         128 LVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDL-EELGVDLLSFSAHKFGG  206 (386)
T ss_pred             eEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCceeccc-cccCcceEEeehhhccC
Confidence            68899999999999999999999999999994     8999999999999987 33222222 22235777888889999


Q ss_pred             CCcceEEEEEecCHHHHHH--HHH-----hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 024997           96 HAGSRFGWAVIKDEAVYQR--MSA-----YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKII  168 (259)
Q Consensus        96 ~~G~R~G~i~~~~~~~~~~--~~~-----~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (259)
                      ..|  +|.++..+ .+.-.  +.-     -.+..+.+++.+  .+...+++.     ....++....++++.++++.+.|
T Consensus       207 pkG--iGaLyv~~-~~~~~p~i~GGgQE~g~RsGTenv~~I--vg~~~A~~~-----a~~~~~~~~~~~~~lr~~l~~~l  276 (386)
T COG1104         207 PKG--IGALYVRP-GVRLEPLIHGGGQERGLRSGTENVPGI--VGFGKAAEI-----AVEELEEENARLRKLRDRLEDGL  276 (386)
T ss_pred             CCc--eEEEEECC-CCccCceeccCcCCCCCCCCCccHHHH--HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            999  89998763 32211  111     122334443333  444445553     23356667888999999999999


Q ss_pred             Hhc-CCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCC-----------------
Q 024997          169 SLS-NRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAE-----------------  230 (259)
Q Consensus       169 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~-----------------  230 (259)
                      .+. +...+..-          ..+..+..+.+.++....+.....|+.+||++..|+.|..+                 
T Consensus       277 ~~~~p~~~~~g~----------~~~rlP~~~~~~f~gv~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~  346 (386)
T COG1104         277 LEIIPDVYLNGD----------DEPRLPNILNFSFPGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEEL  346 (386)
T ss_pred             HhcCCcEEEcCC----------cccCCCCeEEEEeCCCcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHH
Confidence            865 43222110          02334556667778777888999999999999999888631                 


Q ss_pred             -CCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          231 -ARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       231 -~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                       .+.+|+||+.  +.++++.+++.+.+++++
T Consensus       347 a~~siR~S~g~~tt~eei~~~~~~l~~~i~~  377 (386)
T COG1104         347 AHGSIRFSLGRFTTEEEIDAAAEALKEIIKR  377 (386)
T ss_pred             hCccEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence             3579999987  889999999999988764

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.58  E-value=4.1e-14  Score=124.10  Aligned_cols=209  Identities=11%  Similarity=0.039  Sum_probs=129.6

Q ss_pred             hhhhcccCC------CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCC--C--CC-CCC
Q 024997           25 ANLWGNASS------DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAP--I--PA-PAD   82 (259)
Q Consensus        25 ~~~l~~~~~------~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~--~--~~-~~~   82 (259)
                      .+.+++.+.      +++.++++..-+++.|.+.         .++|+++|+++|+||++  |+.....  .  .+ .+|
T Consensus       178 ~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PD  257 (412)
T TIGR02407       178 IAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPD  257 (412)
T ss_pred             HHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCC
Confidence            444666653      2456756555578888754         28999999999999998  5321111  1  11 222


Q ss_pred             CeEEEeccccccCCC-cceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 024997           83 EELMIFTISKLTGHA-GSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRW  161 (259)
Q Consensus        83 ~~i~~~S~SK~~g~~-G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  161 (259)
                          +.++||.++ + |+|+|+++++ +++ +.+.......+++.+++...++.+.++.+.+  ..+    ..+.+++..
T Consensus       258 ----i~~~~K~lg-~~G~pigav~~~-~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~--~~~----l~~~~~~~g  324 (412)
T TIGR02407       258 ----IVCLSKSIS-GYGLPLALTLIK-PEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWS--DDA----FEKAVQRKS  324 (412)
T ss_pred             ----EEEechhcc-CCccceeEEEEc-hhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhc--ccH----HHHHHHHHH
Confidence                447899998 6 9999999998 576 5554334445677888877766777763111  111    233444444


Q ss_pred             HHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCc-hHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec
Q 024997          162 ENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREE-DKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK  240 (259)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~  240 (259)
                      +.+.+.|+.+.    ..++.     +.......|+++|+.++... .+.+...+.++||.+.+..   ...+.+|++..-
T Consensus       325 ~~l~~~l~~l~----~~~~~-----~~~~vrg~Gl~~~l~l~~~~~~~~~~~~~~~~Gv~v~~~~---~~~~~lr~~p~l  392 (412)
T TIGR02407       325 EIIQERLDRIV----AEYPE-----LIKQVRGRGLMQGIECGDGDLAGKIAKAAFENGLIIETSG---PNDEVIKLLPPL  392 (412)
T ss_pred             HHHHHHHHHHH----hhCCC-----ceEeeecceeEEEEEecChHHHHHHHHHHHHCCCEEeccC---CCCCEEEEECCC
Confidence            44444444321    01110     11123456888899986542 3344455557899997632   224689999754


Q ss_pred             --ChhhHHHHHHHHHHHhhh
Q 024997          241 --SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       241 --~~~~~~~~~~~l~~~l~~  258 (259)
                        ++++++++++++.+.+++
T Consensus       393 ~~t~~~i~~~~~~l~~~l~~  412 (412)
T TIGR02407       393 TIDEETLQQGLDILEQAVEE  412 (412)
T ss_pred             CCCHHHHHHHHHHHHHHHhC
Confidence              999999999999998864

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.57  E-value=4e-13  Score=118.06  Aligned_cols=186  Identities=10%  Similarity=0.107  Sum_probs=118.6

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEeccccccCCC
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHA   97 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g~~   97 (259)
                      .|++++++.+++++++|++.+|+||+|.+.     .++|+++|+++|+|+++-.+.. .-+-..+.++++.|++|.+|..
T Consensus       143 ~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~-~~pl~~GaDivv~S~tK~lgg~  221 (436)
T PRK07812        143 DDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYL-IRPLEHGADIVVHSATKYLGGH  221 (436)
T ss_pred             CCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-CCchhcCCCEEEEecccccCCC
Confidence            367788888888999999999999999997     4899999999999998721111 1112345678899999999878


Q ss_pred             cceEEEEEecCHH------------------------------HHHHHH-HhhhhhcCCCCHHHHHHHHHHHHHHHhcCC
Q 024997           98 GSRFGWAVIKDEA------------------------------VYQRMS-AYISLNTMGVSRECQLRAFKLLKVVLEDGG  146 (259)
Q Consensus        98 G~R~G~i~~~~~~------------------------------~~~~~~-~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~  146 (259)
                      |--+|.+++....                              ++.+.+ ......+.+.++..-+.+.+         .
T Consensus       222 G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~r---------g  292 (436)
T PRK07812        222 GTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQ---------G  292 (436)
T ss_pred             CCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhc---------C
Confidence            7767776664211                              111111 22333456666654443333         3


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc-c---ceeeC-CCCCeeEEEecCCCchHHHHHHHHHcCe
Q 024997          147 NNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCT-Y---FKKIR-PPSPAYAWVKCEREEDKDCYGILKAAKI  219 (259)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~---~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~gi  219 (259)
                      -+.+..+.++..++...+.+.|++.+.+.....|+.... .   +.... ...|-.+.++++. +.+.+.+++++-.+
T Consensus       293 l~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~-~~~~~~~f~~~l~l  369 (436)
T PRK07812        293 LETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAG-GVEAGKAFVNALTL  369 (436)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEecC-CHHHHHHHHHhCCc
Confidence            346788899999999999999999998764444431111 1   11111 1234455566653 23445555554443

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.56  E-value=3e-13  Score=119.73  Aligned_cols=206  Identities=12%  Similarity=0.030  Sum_probs=133.8

Q ss_pred             hcccCC-CCceEEEEcCCCCCChhhH----------HHhhcCCCcEEEeeccc--cCCCCCCC----CCCCCCeEEEecc
Q 024997           28 WGNASS-DTHLVEFVTAPNNPDGQMN----------KAVLKGPYAKSIYDHAY--FWPHFAPI----PAPADEELMIFTI   90 (259)
Q Consensus        28 l~~~~~-~~~~~i~i~~p~NPtG~~~----------~~la~~~~~~vi~De~y--~~~~~~~~----~~~~~~~i~~~S~   90 (259)
                      +++.+. +++.+ ++..|-+..|.+.          .++|+++|+++|.||++  |+.....+    .+..+ +  +-++
T Consensus       211 l~~~~~~~~iAa-vi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~P-D--iv~~  286 (443)
T PRK06058        211 IEKQVGADNLAA-VIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVP-D--LITT  286 (443)
T ss_pred             HHHhhCCCceEE-EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCC-C--EEEE
Confidence            334443 45566 6678877776554          28999999999999999  52211111    11111 2  3466


Q ss_pred             ccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh
Q 024997           91 SKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISL  170 (259)
Q Consensus        91 SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  170 (259)
                      +|.++ .|+++|+++++ +++.+.+.......+++.+++.++++.+.|+...+   ++    ..++++++.+++.+.|++
T Consensus       287 gK~l~-~G~Pi~av~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~---~~----l~~~~~~~g~~l~~~L~~  357 (443)
T PRK06058        287 AKGIA-GGLPLSAVTGR-AEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEE---DD----LVARARQIEALMTDRLRA  357 (443)
T ss_pred             ccccc-CCCccEEEEEc-HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHH---cC----HHHHHHHHHHHHHHHHHH
Confidence            89998 89999999999 79998887665667889999999999999986421   22    355566666677777765


Q ss_pred             cCCCccccccccccccceeeCCCCCeeEEEecCC----Cch---HHHHHHHHHcCeeeecCCcccCCCCeEEEEe--ecC
Q 024997          171 SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER----EED---KDCYGILKAAKIIGREGKKFRAEARFVRLSL--LKS  241 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~--~~~  241 (259)
                      +..    ..     ..+..+...|.++.+--...    .+.   ..+...+.++||.+.++..++   +++|+..  ..+
T Consensus       358 l~~----~~-----~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~~---~~lr~~Ppl~~t  425 (443)
T PRK06058        358 LAA----ED-----DRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTYG---NVIRLLPPLVIG  425 (443)
T ss_pred             HHh----hC-----CcEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccCCCC---CEEEEECCCccC
Confidence            431    00     01233455555543322121    111   223333447899998864443   6899974  459


Q ss_pred             hhhHHHHHHHHHHHhhh
Q 024997          242 QDDFDLLLHRLDELISK  258 (259)
Q Consensus       242 ~~~~~~~~~~l~~~l~~  258 (259)
                      ++++++++++|.+++++
T Consensus       426 ~~~i~~~~~~l~~~l~~  442 (443)
T PRK06058        426 DELLREGLDVLEAALAD  442 (443)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998864

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.56  E-value=6.4e-13  Score=115.15  Aligned_cols=114  Identities=15%  Similarity=0.001  Sum_probs=83.2

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~   68 (259)
                      +|+|+.+...+...|.++.       ++.+|++++++.+++++++|+   |+||+|...     .++|+++|++||+|++
T Consensus        78 ~~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~~tk~Ii---p~~~~G~~~d~~~I~~la~~~~i~vIeDaa  154 (376)
T TIGR02379        78 SYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITHRTKAIV---PVHYAGVACDMDTIMALANKHQLFVIEDAA  154 (376)
T ss_pred             CCCcHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCCCCccCHHHHHHHHHHCCCEEEEECc
Confidence            4788888888888887762       356788889999988899865   778889876     3899999999999998


Q ss_pred             c-cCCCCCCCCCCCCCeEEEeccc----cccCCCcceEEEEEecCHHHHHHHHHhhh
Q 024997           69 Y-FWPHFAPIPAPADEELMIFTIS----KLTGHAGSRFGWAVIKDEAVYQRMSAYIS  120 (259)
Q Consensus        69 y-~~~~~~~~~~~~~~~i~~~S~S----K~~g~~G~R~G~i~~~~~~~~~~~~~~~~  120 (259)
                      | ++..+..  ...+....+++||    |.+. +|.+.|+++++++++.++++.++.
T Consensus       155 ~~~g~~~~~--~~~g~~~~~~~fSf~~~K~l~-~g~~gG~v~~~~~~~~~~~~~~~~  208 (376)
T TIGR02379       155 QGVMSTYKG--RALGSIGHLGTFSFHETKNYT-SGGEGGALLINDQAFIERAEIIRE  208 (376)
T ss_pred             cccCCccCC--cccCCCCCEEEEeCCCCCcCc-ccCCceEEEECCHHHHHHHHHHHH
Confidence            8 3211111  0112223455566    8885 788889999887899998887654

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.55  E-value=2.4e-13  Score=113.36  Aligned_cols=212  Identities=11%  Similarity=0.086  Sum_probs=150.9

Q ss_pred             ccChhhhcccC---C-CCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc----cCCCCCCCCC----CCCCe
Q 024997           22 EGEANLWGNAS---S-DTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY----FWPHFAPIPA----PADEE   84 (259)
Q Consensus        22 ~~d~~~l~~~~---~-~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y----~~~~~~~~~~----~~~~~   84 (259)
                      ..|++.|++++   + ..+|+|-+.+.+..+|.+-+     ++|++||++-.+||++    |++....+..    ...-+
T Consensus       286 HND~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvD  365 (570)
T KOG1360|consen  286 HNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVD  365 (570)
T ss_pred             cCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhh
Confidence            57788888887   2 36899999999999999974     7889999999999998    6777666652    34458


Q ss_pred             EEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhh--hcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 024997           85 LMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL--NTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWE  162 (259)
Q Consensus        85 i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (259)
                      |+.||+.|+||+-|   |||.+. ..++|.++.+...  .+.+.++.....++++++.+..    ..-...++..+++..
T Consensus       366 iIsGTLgKafGcVG---GYIAat-~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~----~eg~~lR~~hqrnv~  437 (570)
T KOG1360|consen  366 IISGTLGKAFGCVG---GYIAAT-RKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKS----EEGRVLRRQHQRNVK  437 (570)
T ss_pred             hcccchhhhccccc---ceehhh-hhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhh----hhhHHHHHHHHHHHH
Confidence            89999999999999   999999 6999999987652  3556677777777777765321    122445777888889


Q ss_pred             HHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC--CchHHHHHHHHHcCeeeecCCcccC--CCCeEEEEe
Q 024997          163 NLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--EEDKDCYGILKAAKIIGREGKKFRA--EARFVRLSL  238 (259)
Q Consensus       163 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~gi~~~~g~~f~~--~~~~~Ris~  238 (259)
                      ++.+.|.+++              +.+++.++-+ +-+.+.+  .+.+....++.++||.+..-...-.  ++..+||..
T Consensus       438 ~~kq~l~~~G--------------iPVi~~pSHI-iPv~vgda~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaP  502 (570)
T KOG1360|consen  438 YVKQLLMELG--------------IPVIPNPSHI-IPVRVGDAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAP  502 (570)
T ss_pred             HHHHHHHHcC--------------CcccCCCcce-eeeeccCHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCC
Confidence            9999998776              2223322111 1122222  2467788889999999976432222  456778876


Q ss_pred             ec--ChhhHHHHHHHHHHHh
Q 024997          239 LK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       239 ~~--~~~~~~~~~~~l~~~l  256 (259)
                      +.  +++-++.+++.+..+-
T Consensus       503 TP~HT~~mm~~lv~~l~~vw  522 (570)
T KOG1360|consen  503 TPHHTPQMMNILVNALLDVW  522 (570)
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            54  6666777777776553

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.54  E-value=8.8e-13  Score=117.81  Aligned_cols=237  Identities=11%  Similarity=0.033  Sum_probs=145.3

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhh-H-----HHhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQM-N-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~-~-----~~la~~~~~~vi~De~   68 (259)
                      +|.||.|...++..|.++.      .+.+|+++|++.++++++++++++|| |||.+ .     .++|+++|+++++|.+
T Consensus       168 ~~~hp~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a  246 (481)
T PRK04366        168 DSAHGTNPASAAMAGFKVVEIPSNEDGLVDLEALKAAVGEDTAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGA  246 (481)
T ss_pred             CCccHhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhhcccCCeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEec
Confidence            4789999999988887652      35788899999998889999999998 99976 3     2789999999999998


Q ss_pred             ccCCCCCCC-CCCCCCeEEEeccccccCCC----cceEEEEEecCHHHHHHHHHhh-------------------hhhcC
Q 024997           69 YFWPHFAPI-PAPADEELMIFTISKLTGHA----GSRFGWAVIKDEAVYQRMSAYI-------------------SLNTM  124 (259)
Q Consensus        69 y~~~~~~~~-~~~~~~~i~~~S~SK~~g~~----G~R~G~i~~~~~~~~~~~~~~~-------------------~~~~~  124 (259)
                      +.......+ ++..+.+++++|..|.+|.|    |--+|++++. +++.+.+....                   +.-..
T Consensus       247 ~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~-~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~  325 (481)
T PRK04366        247 NLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVK-EELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAF  325 (481)
T ss_pred             ChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeeh-hhhHhhCCCCeeeccCCceeecccccccCCCcccc
Confidence            831111111 23456799999999998633    3447899888 57776652100                   00000


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEec--
Q 024997          125 GVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKC--  202 (259)
Q Consensus       125 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  202 (259)
                      ..+.....++..++...    +.+-+.+..++...+.+++.+.|+++..  +. + +         .+.. .-..++.  
T Consensus       326 t~~~l~~~~a~~~l~~~----G~~Gl~~~a~~~~~~a~~l~~~L~~~~~--~~-~-~---------~~~~-~~~~~~~~~  387 (481)
T PRK04366        326 YGNFGVLVRAYAYIRSL----GAEGLREVSEDAVLNANYLKARLKDIYD--LP-Y-D---------RPCM-HEFVLSGKK  387 (481)
T ss_pred             cCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHhhCc--cc-C-C---------CCee-EEEEEECcc
Confidence            00111122233333321    2222344445566667777777776521  11 0 0         0000 0012222  


Q ss_pred             ---CCCchHHHHHHHHHcCeeeecCCcccC-CCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          203 ---EREEDKDCYGILKAAKIIGREGKKFRA-EARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       203 ---~~~~~~~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                         ++.+...+.+.|.++||.+. +..+.. ..+.+|+|+..  ++++++.+++.|+++.++
T Consensus       388 ~~~~g~~~~~v~~~L~~~Gi~~~-~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~  448 (481)
T PRK04366        388 LKETGVRTLDIAKRLLDYGFHPP-TIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAEE  448 (481)
T ss_pred             ccccCCCHHHHHHHHHHCCccCC-ccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHH
Confidence               22234556666667899865 333322 35789999854  889999999999887653

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.52  E-value=1.8e-12  Score=114.03  Aligned_cols=195  Identities=10%  Similarity=0.079  Sum_probs=121.8

Q ss_pred             ccCccccccc-ChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEE
Q 024997           14 FESVDYKFEG-EANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMI   87 (259)
Q Consensus        14 ~g~~~~~~~~-d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~   87 (259)
                      .|.++.-+.+ |++++++.+++++++|++.+|+||+|.+.     .++|+++|+++|+|.++-.+.. ..+...+.++++
T Consensus       127 ~Gi~v~~vd~~d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~-~~pl~~GaD~vv  205 (433)
T PRK08134        127 FGIETTFVKPGDIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYL-LRPFEHGADLVY  205 (433)
T ss_pred             CCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCccccc-CCchhcCCCEEE
Confidence            4555433333 67889999999999999999999999998     3899999999999998821211 122234568999


Q ss_pred             eccccccCCCcceEEEEEecCHH--------------------------------HHHHHH-HhhhhhcCCCCHHHHHHH
Q 024997           88 FTISKLTGHAGSRFGWAVIKDEA--------------------------------VYQRMS-AYISLNTMGVSRECQLRA  134 (259)
Q Consensus        88 ~S~SK~~g~~G~R~G~i~~~~~~--------------------------------~~~~~~-~~~~~~~~~~~~~~q~~~  134 (259)
                      .|.+|.+|.+|-.+|.+++....                                +....+ ..........++...+.+
T Consensus       206 ~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~  285 (433)
T PRK08134        206 HSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQL  285 (433)
T ss_pred             eccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            99999998888777776652101                                000010 111223344555433333


Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc----cceeeC-CCCCeeEEEecCCCchHH
Q 024997          135 FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCT----YFKKIR-PPSPAYAWVKCEREEDKD  209 (259)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~  209 (259)
                      .   +      .-+.+..+.++..++...+.+.|++++.+.....|.....    ...... ...|-.+.++++. +.+.
T Consensus       286 ~---~------gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~~-~~~~  355 (433)
T PRK08134        286 L---Q------GIETLPLRMERHVANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKG-GRAA  355 (433)
T ss_pred             h---c------CCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEecC-CHHH
Confidence            2   2      3346778899999999999999999987754444432111    111111 2234455666653 3444


Q ss_pred             HHHHHHHcCe
Q 024997          210 CYGILKAAKI  219 (259)
Q Consensus       210 ~~~ll~~~gi  219 (259)
                      +.++++.-.+
T Consensus       356 ~~~f~~~l~l  365 (433)
T PRK08134        356 GRKFIESLKL  365 (433)
T ss_pred             HHHHHHhCCc
Confidence            5566655544

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.51  E-value=6.3e-13  Score=117.21  Aligned_cols=209  Identities=12%  Similarity=0.073  Sum_probs=126.5

Q ss_pred             cChhhhcccCC---CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--c--CCCCC-CCCC-CCCCe
Q 024997           23 GEANLWGNASS---DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--F--WPHFA-PIPA-PADEE   84 (259)
Q Consensus        23 ~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~--~~~~~-~~~~-~~~~~   84 (259)
                      .|++.+++.+.   +++.+|++..-..-+|.+.         .++|+++|+++|+||+|  +  +.... ...+ .+|  
T Consensus       182 ~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~pD--  259 (426)
T PRK00062        182 NDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTPD--  259 (426)
T ss_pred             CCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCcc--
Confidence            36777777663   3566655553233356554         28899999999999999  3  11110 0001 122  


Q ss_pred             EEEeccccccCCCcceEEEEEecCHHHHHHHHHh---hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 024997           85 LMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAY---ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRW  161 (259)
Q Consensus        85 i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  161 (259)
                        +.++||.++ .|+++|+++++ +++.+.+...   ....+++.+++.++++.+.|+...   .++..++..+.....+
T Consensus       260 --i~~~gK~l~-~G~p~ga~~~~-~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~---~~~~~~~~~~~~~~~~  332 (426)
T PRK00062        260 --LTTLGKIIG-GGLPVGAFGGR-REIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLK---EPGFYEELEALTKRLA  332 (426)
T ss_pred             --hHhhhhHhh-CCCcceeeeEH-HHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHH
Confidence              579999998 89999999998 7999988532   233457889999999999988641   2233333333333333


Q ss_pred             HHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEE-ecCC---------Cc---hHHHHHHHHHcCeeeecCCccc
Q 024997          162 ENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWV-KCER---------EE---DKDCYGILKAAKIIGREGKKFR  228 (259)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------~~---~~~~~~ll~~~gi~~~~g~~f~  228 (259)
                      +.+.+.+++.+.             .....+.|.++.+. .-+.         .+   ...+...+.++||.+.|.    
T Consensus       333 ~~l~~~~~~~~~-------------~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~----  395 (426)
T PRK00062        333 EGLKEAAKKAGI-------------PLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPS----  395 (426)
T ss_pred             HHHHHHHHHcCC-------------ceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecC----
Confidence            333333333221             11123444443322 1110         01   134445555789999773    


Q ss_pred             CCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          229 AEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       229 ~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                       +.+.+++++..++++++++++++.+++++
T Consensus       396 -~~~~~~~~~~~t~~ei~~~~~~l~~~l~~  424 (426)
T PRK00062        396 -QFEAGFVSAAHTDEDIEKTLEAARKAFAA  424 (426)
T ss_pred             -CcCceeeeccCCHHHHHHHHHHHHHHHHh
Confidence             12456888767999999999999988763

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.50  E-value=6e-13  Score=112.49  Aligned_cols=212  Identities=15%  Similarity=0.143  Sum_probs=146.5

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEecc
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFTI   90 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~   90 (259)
                      .|.+++++++++++.+|++..-+=-.|.+.         .++|+++|+++|.||++  ++....-+. ...+..=-+-++
T Consensus       172 nDi~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tl  251 (404)
T COG4992         172 NDIEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTL  251 (404)
T ss_pred             CCHHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEEe
Confidence            567889999999999956555555555554         28999999999999999  322211111 011111127789


Q ss_pred             ccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh
Q 024997           91 SKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISL  170 (259)
Q Consensus        91 SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  170 (259)
                      .|.+| -|+.+|.+++. +.+.+.+..-.+..+++.++++-+++.+.++...   .++    ..++.++.-+.+.+.|++
T Consensus       252 aK~Lg-GG~PigA~la~-~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~---~e~----ll~~v~~~g~~~~~~L~~  322 (404)
T COG4992         252 AKALG-GGFPIGAMLAT-EEIASAFTPGDHGSTFGGNPLACAVALAVLEVLL---EEG----LLENVREKGEYLLQRLRE  322 (404)
T ss_pred             ecccc-CCccceeeEEc-hhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHc---chh----HHHHHHHHHHHHHHHHHH
Confidence            99998 88999999998 6888888877788899999999999999998652   223    356667777777777776


Q ss_pred             cCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHH
Q 024997          171 SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDL  247 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~  247 (259)
                      +..    .++     .++.++.. |+.+=+.+... ....+...+.++|+++.+     .+++.+|+...-  +++++++
T Consensus       323 l~~----~~~-----~v~~vRG~-GLmiGiel~~~~~a~~~~~~~~~~gvL~~~-----a~~~ViR~~PpL~i~~eei~~  387 (404)
T COG4992         323 LKR----RYP-----LVKEVRGR-GLMIGIELKEPYRARDIVRALREEGVLVLP-----AGPNVIRFLPPLVITEEEIDE  387 (404)
T ss_pred             Hhh----cCC-----ceeeeecc-eeEEEEEecCcccHHHHHHHHHHCCeEEec-----CCCCeEEecCCccCCHHHHHH
Confidence            542    100     12222322 33334444443 235555666678999987     556799999743  9999999


Q ss_pred             HHHHHHHHhhh
Q 024997          248 LLHRLDELISK  258 (259)
Q Consensus       248 ~~~~l~~~l~~  258 (259)
                      +++++.+.+++
T Consensus       388 ~~~~l~~~l~~  398 (404)
T COG4992         388 ALDALERALAA  398 (404)
T ss_pred             HHHHHHHHHHH
Confidence            99999998863

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.50  E-value=1.7e-12  Score=112.62  Aligned_cols=210  Identities=15%  Similarity=0.106  Sum_probs=143.6

Q ss_pred             ccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc-CCCCCCCCCCCCCeEEEeccccccC
Q 024997           22 EGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF-WPHFAPIPAPADEELMIFTISKLTG   95 (259)
Q Consensus        22 ~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~-~~~~~~~~~~~~~~i~~~S~SK~~g   95 (259)
                      .+|++++++.+++++++++++..+|-||..+     .++|+++|+++++|-++. +.....+ ...+.+++++|..|.+|
T Consensus       126 ~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~-~~~~~D~~~~s~~Kl~g  204 (371)
T PF00266_consen  126 SLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDL-DELGADFLVFSSHKLGG  204 (371)
T ss_dssp             SCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--T-TTTTESEEEEESTSTTS
T ss_pred             hhhhhhhhhhhccccceEEeecccccccEEeeeceehhhhhccCCceeEechhccccccccc-cccccceeeecccccCC
Confidence            5677889999999999999999999999988     388999999999999873 2111222 34466899999999667


Q ss_pred             CCcceEEEEEecCHHHHHHHHHhhhh--------------------hcC-CCCHHHHHHHHHHHHHHHhcCCcchHHHHH
Q 024997           96 HAGSRFGWAVIKDEAVYQRMSAYISL--------------------NTM-GVSRECQLRAFKLLKVVLEDGGNNIFEFGY  154 (259)
Q Consensus        96 ~~G~R~G~i~~~~~~~~~~~~~~~~~--------------------~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  154 (259)
                      .+|  +|+++.. ++..+.++.....                    ... .++.+...++..+++...    +.-+++.+
T Consensus       205 p~G--~g~l~v~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~----~~g~~~i~  277 (371)
T PF00266_consen  205 PPG--LGFLYVR-PEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLE----EIGIERIR  277 (371)
T ss_dssp             SST--EEEEEEE-HHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred             CCc--hhhheeh-hhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhh----ccccccch
Confidence            788  7999999 6888887432110                    011 233333444445555321    12356677


Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccC-----
Q 024997          155 NTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRA-----  229 (259)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~-----  229 (259)
                      ++..+..+.+.+.|++++.+.+.. +        ...+..+..+.+.++..+.+.+.+.|++.||.+..|..+..     
T Consensus       278 ~~~~~l~~~~~~~l~~~~~~~~~~-~--------~~~~~~~~i~~~~~~~~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~  348 (371)
T PF00266_consen  278 ERIRELAEYLREALEELPGIEVLG-P--------DDEPRRPSIVSFNLPGSDADDVVKYLEERGIAVSTGSACAGPSLDI  348 (371)
T ss_dssp             HHHHHHHHHHHHHHHHTTTEEESS-S--------SCGGBGTTEEEEEETTSSHHHHHHHHHHHTEEEEESTTTCHHHHHH
T ss_pred             hhhhhHHHHHHhhhhcCCceeEee-e--------cccccccceEEEeecCCCHHHHHHHHhhcCEEEeccCcccHHHHHH
Confidence            888889999999999887533311 0        01233444566666766777888888888999999877651     


Q ss_pred             --CCCeEEEEeec--ChhhHHHH
Q 024997          230 --EARFVRLSLLK--SQDDFDLL  248 (259)
Q Consensus       230 --~~~~~Ris~~~--~~~~~~~~  248 (259)
                        -.+.+|+|+..  +.++++++
T Consensus       349 ~~~~~~iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  349 LGMGGVIRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             HHTTTEEEEE-GTTSSHHHHHHH
T ss_pred             hCCCCEEEEeccCCCCHHHHhhC
Confidence              13899999976  88888763

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.49  E-value=3.5e-12  Score=109.67  Aligned_cols=227  Identities=14%  Similarity=0.087  Sum_probs=138.2

Q ss_pred             CCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc
Q 024997            2 PFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY   69 (259)
Q Consensus         2 P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y   69 (259)
                      |+|+.+...+...|.++.       .+.+|++.|++.++++++++++++   |+|...     .++|+++|+++|+|+++
T Consensus        66 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~  142 (352)
T cd00616          66 FTFVATANAILLLGATPVFVDIDPDTYNIDPELIEAAITPRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQ  142 (352)
T ss_pred             cchHHHHHHHHHcCCeEEEEecCCCcCCcCHHHHHHhcCcCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCC
Confidence            566667777777776652       466788899998888889888764   688765     38899999999999998


Q ss_pred             -cCCCCCCC-CCCCCCeEEEeccc--cccCCCcceEEEEEecCHHHHHHHHHhhhhh---------------cCCCCHHH
Q 024997           70 -FWPHFAPI-PAPADEELMIFTIS--KLTGHAGSRFGWAVIKDEAVYQRMSAYISLN---------------TMGVSREC  130 (259)
Q Consensus        70 -~~~~~~~~-~~~~~~~i~~~S~S--K~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~---------------~~~~~~~~  130 (259)
                       ++...... .+. ...+.+.|++  |.++  +-+.|+++..++++.+.+.......               ....+.+.
T Consensus       143 ~~g~~~~~~~~~~-~~d~~~~S~~~~K~~~--~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (352)
T cd00616         143 ALGATYKGRKVGT-FGDAGAFSFHPTKNLT--TGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQ  219 (352)
T ss_pred             CCCCeECCEEccc-CcceeEEcCCCCCCCc--ccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHH
Confidence             32111110 011 1246677766  9884  2345888887668888776543211               12233333


Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecC---CCch
Q 024997          131 QLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCE---REED  207 (259)
Q Consensus       131 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  207 (259)
                      ..++...++         .+++..++.+++.+.+.+.|++++++.+..-.+.        .......+.+.++   ..+.
T Consensus       220 aa~~~~~l~---------~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~  282 (352)
T cd00616         220 AAIGLAQLE---------KLDEIIARRREIAERYKELLADLPGIRLPDVPPG--------VKHSYHLYVIRLDPEAGESR  282 (352)
T ss_pred             HHHHHHHHH---------hhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCC--------CceeeEEEEEEECCcCCCCH
Confidence            333332222         3455667778888888888887665432210000        0012233344454   2355


Q ss_pred             HHHHHHHHHcCeeeecCCcccC------------------------CCCeEEEEeec--ChhhHHHHHHHHH
Q 024997          208 KDCYGILKAAKIIGREGKKFRA------------------------EARFVRLSLLK--SQDDFDLLLHRLD  253 (259)
Q Consensus       208 ~~~~~ll~~~gi~~~~g~~f~~------------------------~~~~~Ris~~~--~~~~~~~~~~~l~  253 (259)
                      +.+.+.|+++||.+...  +.+                        ..+.+|+++..  ++++++.+++.|+
T Consensus       283 ~~v~~~L~~~gI~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         283 DELIEALKEAGIETRVH--YPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             HHHHHHHHHCCCCeeee--cCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence            66777777889966421  111                        02679999865  8999999988763

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.48  E-value=2.1e-11  Score=107.17  Aligned_cols=216  Identities=10%  Similarity=0.006  Sum_probs=129.6

Q ss_pred             cccChhhhcccCC-CCceEEEEcCCCCCChhhH---HHhhcCCCcEEEeeccc-cC--CCCCCCCCCCCCeEEEeccccc
Q 024997           21 FEGEANLWGNASS-DTHLVEFVTAPNNPDGQMN---KAVLKGPYAKSIYDHAY-FW--PHFAPIPAPADEELMIFTISKL   93 (259)
Q Consensus        21 ~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~---~~la~~~~~~vi~De~y-~~--~~~~~~~~~~~~~i~~~S~SK~   93 (259)
                      +.+|++++++.+. .++++|++..+.++.-.-+   .++|+++|+++|+|+++ ++  ............+++++|++|.
T Consensus       153 ~~~d~~~le~~l~~~~~klVi~~~~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~  232 (416)
T PRK13034        153 GLIDYDEVEELAKEHKPKLIIAGFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKT  232 (416)
T ss_pred             CCcCHHHHHHHHhhcCCeEEEECCCccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCccc
Confidence            4588888888874 4678877767665422222   38899999999999997 21  1111111123467999999999


Q ss_pred             c-CCCcceEEEEEecCHHHHHHHHHhhhhh-cCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhc
Q 024997           94 T-GHAGSRFGWAVIKDEAVYQRMSAYISLN-TMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLS  171 (259)
Q Consensus        94 ~-g~~G~R~G~i~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  171 (259)
                      + |..|   |++++.++++.+.++...... ..+.+++...++...+...    ......+.++++.++.+++.+.|+++
T Consensus       233 l~g~~G---G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~----~~~~~~~~~~~l~~~a~~l~~~L~~~  305 (416)
T PRK13034        233 LRGPRG---GMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEA----LQPEFKTYAKQVIANAQALAEVLKER  305 (416)
T ss_pred             CCCCCC---eEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHH----hChhHHHHHHHHHHHHHHHHHHHHHc
Confidence            9 4445   888877544545444432211 1123333333333333321    11122345788999999999999876


Q ss_pred             CCCccccccccccccceeeCC-CCCeeEEEecCCC--chHHHHHHHHHcCeeeecC-Ccc----cCCCCeEEEEee----
Q 024997          172 NRFSLQEIAPQYCTYFKKIRP-PSPAYAWVKCERE--EDKDCYGILKAAKIIGREG-KKF----RAEARFVRLSLL----  239 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~g-~~f----~~~~~~~Ris~~----  239 (259)
                      +              +....+ ....-+++.+...  +...+.+.|+++||.+.+- ...    ...+..+|+|+.    
T Consensus       306 G--------------~~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~  371 (416)
T PRK13034        306 G--------------YDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTT  371 (416)
T ss_pred             C--------------CEeccCCCCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHh
Confidence            4              222211 1222344444432  4566667788889988641 111    112467999962    


Q ss_pred             --cChhhHHHHHHHHHHHhh
Q 024997          240 --KSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       240 --~~~~~~~~~~~~l~~~l~  257 (259)
                        .++++++.+.+.|.+++.
T Consensus       372 ~~~~~~di~~l~~~l~~~~~  391 (416)
T PRK13034        372 RGFGEAEFREIANWILDVLD  391 (416)
T ss_pred             CCCCHHHHHHHHHHHHHHHh
Confidence              268999999999998876

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.47  E-value=1e-11  Score=107.84  Aligned_cols=237  Identities=14%  Similarity=0.058  Sum_probs=134.5

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~   68 (259)
                      +|+|+.+...+...|.++.       .|.+|++++++.+++++++|+++   ||+|...     .++|+++|++||+|++
T Consensus        78 ~~t~~~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~~tk~i~~~---~~~G~~~~~~~i~~la~~~~i~vIeD~a  154 (375)
T PRK11706         78 SYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITPKTRAIVPV---HYAGVACEMDTIMALAKKHNLFVVEDAA  154 (375)
T ss_pred             CCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCCCCeEEEEe---CCCCCccCHHHHHHHHHHcCCEEEEECc
Confidence            4788888888888888762       35688889999998888987765   4688765     3889999999999999


Q ss_pred             c-cCCCC--CCCCCCCCCeEEEeccc--cccCCCcceEEEEEecCHHHHHHHHHhhhhh-----------------cCCC
Q 024997           69 Y-FWPHF--APIPAPADEELMIFTIS--KLTGHAGSRFGWAVIKDEAVYQRMSAYISLN-----------------TMGV  126 (259)
Q Consensus        69 y-~~~~~--~~~~~~~~~~i~~~S~S--K~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~-----------------~~~~  126 (259)
                      | ++...  ..+...  ..+.+.||.  |.++ +|.+.++++.+ +++.++++......                 ..+.
T Consensus       155 ~a~g~~~~~~~~g~~--~~~~~~Sf~~~K~l~-~g~gG~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~  230 (375)
T PRK11706        155 QGVMSTYKGRALGTI--GHIGCFSFHETKNYT-AGEGGALLIND-PALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGS  230 (375)
T ss_pred             cccccccCCeeeecC--cCEEEEeCCCCcccc-ccCCeEEEECC-HHHHHHHHHHHHcCCCcchhhccCCCcceeeeccc
Confidence            8 32111  111111  123333433  9996 68887777766 79998777665321                 1122


Q ss_pred             CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCC---CCCeeEEEecC
Q 024997          127 SRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP---PSPAYAWVKCE  203 (259)
Q Consensus       127 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  203 (259)
                      +...+...+++...     ....+++..++-+++.+...+.|++++......++.        .++   ....+.++.++
T Consensus       231 ~~~~~~~~aa~~~~-----ql~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  297 (375)
T PRK11706        231 SYLPSELQAAYLWA-----QLEAADRINQRRLALWQRYYDALAPLAEAGRIELPS--------IPDDCKHNAHMFYIKLR  297 (375)
T ss_pred             ccCcCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCC--------CCCCCceeeEEEEEEEC
Confidence            22111111112111     011234445555555556666666543110000010        011   11224455554


Q ss_pred             C-CchHHHHHHHHHcCeeeecCC----c------cc---C--------CCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          204 R-EEDKDCYGILKAAKIIGREGK----K------FR---A--------EARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       204 ~-~~~~~~~~ll~~~gi~~~~g~----~------f~---~--------~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      . .+.+.+.+.|.++||.++...    .      ++   .        ....+-|-+..  ++++++..++.|+++++
T Consensus       298 ~~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~~  375 (375)
T PRK11706        298 DLEDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFFS  375 (375)
T ss_pred             CcCCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHhC
Confidence            3 245677777778999876431    0      00   0        01223333322  78999999999988764

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.46  E-value=6e-12  Score=104.45  Aligned_cols=225  Identities=11%  Similarity=0.124  Sum_probs=146.2

Q ss_pred             ccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEeccccccCC
Q 024997           22 EGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGH   96 (259)
Q Consensus        22 ~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g~   96 (259)
                      ..|++.+++.++++||+|++.+-.||.+.+.     .++|+++|+++|+|+.+ ...+..-+-..+-.|++.|.||..|.
T Consensus       134 ~~d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~-atpyl~rP~~hGADIVvHS~TK~igG  212 (426)
T COG2873         134 PDDPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTF-ATPYLCRPIEHGADIVVHSATKYIGG  212 (426)
T ss_pred             CCCHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCC-CcceecchhhcCCCEEEEeecccccC
Confidence            4557899999999999999999999999998     49999999999999987 32232223355668999999999988


Q ss_pred             CcceEEEEEecCHH-----------------------HHH---------HHH-HhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 024997           97 AGSRFGWAVIKDEA-----------------------VYQ---------RMS-AYISLNTMGVSRECQLRAFKLLKVVLE  143 (259)
Q Consensus        97 ~G~R~G~i~~~~~~-----------------------~~~---------~~~-~~~~~~~~~~~~~~q~~~~~~l~~~~~  143 (259)
                      .|--+|-++.+...                       +.+         +.+ ...+-+..+.+|.+....++.++    
T Consensus       213 hGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlE----  288 (426)
T COG2873         213 HGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLE----  288 (426)
T ss_pred             CccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchh----
Confidence            99989887765210                       111         111 12334566777776665555555    


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc-----ceeeCCCCCeeEEEecCCC--chHHHHHHHH-
Q 024997          144 DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTY-----FKKIRPPSPAYAWVKCERE--EDKDCYGILK-  215 (259)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~-  215 (259)
                           .+.-++++..+|...+.+.|++.+.......++...+.     -+..+...|-.+.+.+++.  ....+...|+ 
T Consensus       289 -----TL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kgg~ea~~~fi~~l~L  363 (426)
T COG2873         289 -----TLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKKFIDALKL  363 (426)
T ss_pred             -----hhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecChHHHHHHHHHHHHH
Confidence                 56678999999999999999999976655544322221     1123334455666666654  1122211111 


Q ss_pred             ---HcC------eeeecCCccc------------CCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          216 ---AAK------IIGREGKKFR------------AEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       216 ---~~g------i~~~~g~~f~------------~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                         ..+      +.+-|.+..-            ..++.+|+|++.  |++++++.-|.+.+++
T Consensus       364 ~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlSVGI--Ed~~DiiaDl~qAl~~  425 (426)
T COG2873         364 FSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVGI--EDIDDIIADLEQALEA  425 (426)
T ss_pred             HHhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEEecc--CCHHHHHHHHHHHHhc
Confidence               112      2333433221            237889999987  5555566666655543

>TIGR01814 kynureninase kynureninase

Probab=99.45  E-value=9.5e-12  Score=109.20  Aligned_cols=211  Identities=12%  Similarity=-0.003  Sum_probs=127.7

Q ss_pred             ccChhhhcccC---CCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeecccc-CCCCCCCCCCCCCeEEEecccc
Q 024997           22 EGEANLWGNAS---SDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYF-WPHFAPIPAPADEELMIFTISK   92 (259)
Q Consensus        22 ~~d~~~l~~~~---~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~-~~~~~~~~~~~~~~i~~~S~SK   92 (259)
                      .+|++.+++.+   +++++++++++++|+||.+++     ++|+++|+++++|+++. +.....+ ...+.++++.|..|
T Consensus       155 ~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~-~~~gvD~~~~s~hK  233 (406)
T TIGR01814       155 TLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDL-HDWGVDFACWCTYK  233 (406)
T ss_pred             ccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCccccc-ccCCCCEEEEcCcc
Confidence            45677777766   478999999999999999983     89999999999999883 2111222 24467899999999


Q ss_pred             cc-CCCcceEEEEEecCHHHHHHHHHhhhh----------------------hcCC-CCHHHHHHHHHHHHHHHhcCCcc
Q 024997           93 LT-GHAGSRFGWAVIKDEAVYQRMSAYISL----------------------NTMG-VSRECQLRAFKLLKVVLEDGGNN  148 (259)
Q Consensus        93 ~~-g~~G~R~G~i~~~~~~~~~~~~~~~~~----------------------~~~~-~~~~~q~~~~~~l~~~~~~~~~~  148 (259)
                      .+ |.+|  .|..+.+ +. ...+......                      ...+ ++.+.-.++.++++...+    .
T Consensus       234 ~l~g~pG--~~l~v~~-~~-~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~----~  305 (406)
T TIGR01814       234 YLNAGPG--AGAFVHE-KH-AHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQ----A  305 (406)
T ss_pred             ccCCCCC--eEEEEeh-hh-hhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHh----c
Confidence            86 4567  3433334 23 3222211000                      0012 233333444445553211    1


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCC----CCCeeEEEecCCCchHHHHHHHHHcCeeeecC
Q 024997          149 IFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP----PSPAYAWVKCEREEDKDCYGILKAAKIIGREG  224 (259)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g  224 (259)
                      -+++.+++.++..+++.+.|+++.+.    .+.     +....+    ..+..+.+.++ .+.+.+.+.|.++||.+.. 
T Consensus       306 g~~~i~~~~~~l~~~l~~~l~~~~~~----~~~-----~~i~~~~~~~~r~~~v~~~~~-~~~~~~~~~L~~~gi~v~~-  374 (406)
T TIGR01814       306 GMEALRKKSLLLTDYLEELIKARCGG----PPV-----LTIITPRDHAQRGCQLSLTHP-VPGKAVFQALIKRGVIGDK-  374 (406)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhcCC----CCc-----eEEeCCCChhhcCCeEEEEec-CCHHHHHHHHHHCCEEEec-
Confidence            24556777788888888877764210    000     111111    11223445555 3445566666778998753 


Q ss_pred             CcccCCCCeEEEEee--c-ChhhHHHHHHHHHHHh
Q 024997          225 KKFRAEARFVRLSLL--K-SQDDFDLLLHRLDELI  256 (259)
Q Consensus       225 ~~f~~~~~~~Ris~~--~-~~~~~~~~~~~l~~~l  256 (259)
                          ..++.+|+|++  . +.++++.+++.|++++
T Consensus       375 ----~~~~~iRiS~~~~~nt~~did~l~~~l~~~~  405 (406)
T TIGR01814       375 ----REPSVIRVAPVPLYNTFVDVYDAVNVLEEIL  405 (406)
T ss_pred             ----cCCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence                12468999984  3 8999999999998865

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.44  E-value=3.4e-12  Score=112.49  Aligned_cols=211  Identities=11%  Similarity=-0.019  Sum_probs=126.4

Q ss_pred             ChhhhcccCC------CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCC
Q 024997           24 EANLWGNASS------DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APAD   82 (259)
Q Consensus        24 d~~~l~~~~~------~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~   82 (259)
                      |.+.|++.+.      ++..++++.....-.|.+.         .++|+++|+++|+||++  |+.....+.    +..+
T Consensus       181 ~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~P  260 (425)
T PRK09264        181 TLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITP  260 (425)
T ss_pred             HHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCC
Confidence            4556676662      2345644444344455433         28999999999999998  532111111    1111


Q ss_pred             CeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 024997           83 EELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWE  162 (259)
Q Consensus        83 ~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (259)
                       .  +.++||.++..|+++|+++++ +++ ..+.......+++.+++...++.+.++...+  .    ....+.++++.+
T Consensus       261 -D--i~t~~K~l~~~G~pigav~~~-~~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~--~----~~l~~~~~~~g~  329 (425)
T PRK09264        261 -D--IVTLSKSISGYGLPMALVLIK-PEL-DVWKPGEHNGTFRGNNLAFVTATAALEEYWS--D----DAFEKEVKAKGE  329 (425)
T ss_pred             -C--EEEeccccCCCccceEEEEEc-hhh-hccCCCccCCCCCCCHHHHHHHHHHHHHHHh--h----hHHHHHHHHHHH
Confidence             2  457899998559999999999 576 3443323344567777777777677742210  1    124556666666


Q ss_pred             HHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCc-hHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--
Q 024997          163 NLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREE-DKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--  239 (259)
Q Consensus       163 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--  239 (259)
                      .+.+.|+.+..    .++.     +.......|.+.++.+.... ...+...+.++||.+.+...+   ...+|++..  
T Consensus       330 ~l~~~l~~l~~----~~~~-----~~~~vrg~Gl~~~i~l~~~~~~~~l~~~~~~~Gv~~~~~~~~---~~~lr~~p~l~  397 (425)
T PRK09264        330 LVRERLEEIAA----KYPG-----LGAEVRGRGMMQGIDFGDGELAGKIAAEAFENGLIIETSGPE---DEVVKLLPPLT  397 (425)
T ss_pred             HHHHHHHHHHH----hCCC-----ceecceecccEEEEEecChHHHHHHHHHHHHCCCEEeccCCC---CCEEEEeCCCC
Confidence            66666654321    0100     10112235677788886431 334445555789999874322   367888865  


Q ss_pred             cChhhHHHHHHHHHHHhh
Q 024997          240 KSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       240 ~~~~~~~~~~~~l~~~l~  257 (259)
                      .+++++++++++|.+.++
T Consensus       398 ~t~~ei~~~~~~l~~~l~  415 (425)
T PRK09264        398 IDEEELEEGLDILEEAVA  415 (425)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            489999999999998764

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.44  E-value=1.3e-11  Score=108.68  Aligned_cols=233  Identities=12%  Similarity=0.111  Sum_probs=140.3

Q ss_pred             hhccCccccc--ccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCe
Q 024997           12 DYFESVDYKF--EGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEE   84 (259)
Q Consensus        12 ~~~g~~~~~~--~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~   84 (259)
                      ...|.++.-+  ..|++.+++.+++++++|++.+|+||+|.+.     .++|+++|+++|+|.++-.+.. .-+...+.+
T Consensus       130 ~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~-~~p~~~GaD  208 (437)
T PRK05613        130 NRLGIEVTFVENPDDPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAAL-VRPLELGAD  208 (437)
T ss_pred             HhcCeEEEEECCCCCHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccc-cChHHhCCC
Confidence            3345554322  2367889999999999989999999999777     3889999999999998721111 111123458


Q ss_pred             EEEeccccccCCCcceEEEEEecCHHH-----------------------------------H-HHHHHhhhhhcCCCCH
Q 024997           85 LMIFTISKLTGHAGSRFGWAVIKDEAV-----------------------------------Y-QRMSAYISLNTMGVSR  128 (259)
Q Consensus        85 i~~~S~SK~~g~~G~R~G~i~~~~~~~-----------------------------------~-~~~~~~~~~~~~~~~~  128 (259)
                      +++.|++|.++..|--+|-+++.+.++                                   . +.........+.+.++
T Consensus       209 ivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p  288 (437)
T PRK05613        209 VVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSP  288 (437)
T ss_pred             EEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcCCCCCH
Confidence            999999999986665555544421110                                   0 1112233345566777


Q ss_pred             HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc-c---ceee-CCCCCeeEEEecC
Q 024997          129 ECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCT-Y---FKKI-RPPSPAYAWVKCE  203 (259)
Q Consensus       129 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~---~~~~-~~~~~~~~~~~~~  203 (259)
                      ...+.+.+.+         +.+..+.++..++...+.+.|++.+.+.....|..... .   .... ....|-.+.+.++
T Consensus       289 ~~a~l~~rgl---------~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~~g~gg~~sf~l~  359 (437)
T PRK05613        289 FNAWVTAQGL---------DTLSLRLERHNENAIKVAEFLNNHEKVAKVNFAGLKDSPWYATKEKLGLKYTGSVLSFDIK  359 (437)
T ss_pred             HHHHHHHccc---------CcHHHHHHHHHHHHHHHHHHHHcCCCcceEECCCCCCCccHHHHHHhcCCCCceEEEEEec
Confidence            6555444443         46778899999999999999999998754444432211 1   1111 1112445566665


Q ss_pred             CCchHHHHHHHHHcCeeee---cCC------------c----------ccCCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          204 REEDKDCYGILKAAKIIGR---EGK------------K----------FRAEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       204 ~~~~~~~~~ll~~~gi~~~---~g~------------~----------f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      . +.+.+.+++++-.+...   -|.            +          .+.+++.+|||++-  |+.+++++-|.+.|+
T Consensus       360 ~-~~~~~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~h~~~~~~~~~~~Gi~~~liRlsvGl--E~~~dLi~Dl~~Al~  435 (437)
T PRK05613        360 G-GKDEAWAFIDALKLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAGITQATVRLSVGI--EDIDDIIADLEGGFA  435 (437)
T ss_pred             C-CHHHHHHHHHhCCcceEccCCCCCchhhcCCCccCCccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHh
Confidence            3 34555566655444221   111            0          01125789999987  344455555555554

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.43  E-value=7e-12  Score=109.40  Aligned_cols=210  Identities=12%  Similarity=0.049  Sum_probs=129.5

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEecc
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFTI   90 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~   90 (259)
                      .|++.|++.+.+++.++++...++..|.+.         .++|+++|+++|+||++  |+.....+. ...+...-+.++
T Consensus       167 ~d~~~l~~~l~~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~  246 (395)
T PRK03715        167 NDIASVEKLITDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTL  246 (395)
T ss_pred             chHHHHHHHcCCCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceeee
Confidence            456778888877777755554455555543         28899999999999998  432221111 111111125788


Q ss_pred             ccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh
Q 024997           91 SKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISL  170 (259)
Q Consensus        91 SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  170 (259)
                      ||.+| .|+.+|.+++. +++.. +.......+++.+++..+++.+.++...   .+    ...+++++.-+.+.+.|++
T Consensus       247 gK~lg-~G~p~~av~~~-~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~l~---~~----~l~~~~~~~g~~l~~~L~~  316 (395)
T PRK03715        247 GKGIG-GGVPLAALLAK-AEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQLL---AP----GFLEGVRARGEYLKEKLLE  316 (395)
T ss_pred             hhhhh-CCcceEEEEEc-ccccc-ccCCCcCCCCCCCHHHHHHHHHHHHHHH---hc----cHHHHHHHHHHHHHHHHHH
Confidence            99998 68999999988 58753 3222223456778888888888887541   12    2355666666677776665


Q ss_pred             cCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHc---CeeeecCCcccCCCCeEEEEeec--ChhhH
Q 024997          171 SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAA---KIIGREGKKFRAEARFVRLSLLK--SQDDF  245 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---gi~~~~g~~f~~~~~~~Ris~~~--~~~~~  245 (259)
                      +..    .. +     +...... |..+-+.+.......+.+.+.+.   ||.+.+.     ..+.+||+...  +++++
T Consensus       317 l~~----~~-~-----i~~vrG~-Glm~~i~l~~~~~~~~~~~~~~~~~~Gi~~~~~-----~~~~lR~~p~l~~t~~ei  380 (395)
T PRK03715        317 LSE----ER-G-----LEGERGE-GLLRALLLGKDIGPQIVEKARDMQPDGLLLNAP-----RPNLLRFMPALNVTTEEI  380 (395)
T ss_pred             Hhh----cC-C-----cCeEEcc-eeEEEEEecCchHHHHHHHHHhccCCCEEEeec-----CCCEEEEeCCcccCHHHH
Confidence            421    00 0     1112222 34444555432223444444455   9988652     23689999854  99999


Q ss_pred             HHHHHHHHHHhhh
Q 024997          246 DLLLHRLDELISK  258 (259)
Q Consensus       246 ~~~~~~l~~~l~~  258 (259)
                      ++++++|.+.+++
T Consensus       381 ~~~~~~l~~~l~~  393 (395)
T PRK03715        381 DQMIAMLRSVLDK  393 (395)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998763

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.43  E-value=1e-11  Score=107.48  Aligned_cols=229  Identities=12%  Similarity=0.107  Sum_probs=138.8

Q ss_pred             hhhhhccCcccccccCh-hhhcccCCC-CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCC
Q 024997            9 EQTDYFESVDYKFEGEA-NLWGNASSD-THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPA   81 (259)
Q Consensus         9 ~~~~~~g~~~~~~~~d~-~~l~~~~~~-~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~   81 (259)
                      ..+...|.++.-+.++. +.++  +++ ++++|++.+|+|||+.+.     .++|++++  +++|.++ +.....-+-..
T Consensus       122 ~~~~~~Gi~v~fvd~~~~~~~~--l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~-~s~~~~~pl~~  196 (384)
T PRK06434        122 KVLKTLGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATF-ASPYNQNPLDL  196 (384)
T ss_pred             HHHHhcCcEEEEECCCChhhee--ecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCC-CCcccCCchhc
Confidence            44444565554444443 3343  444 789999999999999887     38899998  4669987 22221111123


Q ss_pred             CCeEEEeccccccCCCc-ceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 024997           82 DEELMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKR  160 (259)
Q Consensus        82 ~~~i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  160 (259)
                      .-++++.|.+|.++.+| .-.|.++..++++.+.++..........+++..+.+..         .-+.+..+.++.+++
T Consensus       197 gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~---------gL~tL~~R~~r~~~~  267 (384)
T PRK06434        197 GADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALR---------GLKTLGLRMEKHNKN  267 (384)
T ss_pred             CCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHh---------CCCcHHHHHHHHHHH
Confidence            46899999999996433 55688877656787777765544455556654333333         334678889999999


Q ss_pred             HHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCee---eecCC------------
Q 024997          161 WENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKII---GREGK------------  225 (259)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~---~~~g~------------  225 (259)
                      ...+.+.|+.++.+.....|...  ..+......|..+.+.++.  .+.+.+++++-.+.   +.-|.            
T Consensus       268 a~~~a~~L~~~p~v~~V~yPgl~--~~~~~~~g~g~~~sf~l~~--~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~  343 (384)
T PRK06434        268 GMELARFLRDSKKISNVYYPDTE--IGKKVLRGFGGMLSFELRS--MEDVHKFIRNLEIPMVAASLGGVESLITLPVETS  343 (384)
T ss_pred             HHHHHHHHHcCCCccEEECCChH--HHHHhcCCCCceEEEEECC--HHHHHHHHHhCCcceEccCCCCCCeeeECCCccc
Confidence            99999999999876544444321  1111112234455566653  44455666554442   11121            


Q ss_pred             c----------ccCCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          226 K----------FRAEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       226 ~----------f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      +          .+..++.+|||++-  |+.+++++-|.+.|.
T Consensus       344 h~~~~~e~~~~~gi~~~liRlsvGl--Ed~~dLi~dl~~Al~  383 (384)
T PRK06434        344 HSSLSPEERERLGISDNLVRFSIGI--EDIDDLIKDIENALS  383 (384)
T ss_pred             cccCCHHHHHhcCCCcCeEEEEeCc--CCHHHHHHHHHHHhc
Confidence            0          01125689999987  345556666665554

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.43  E-value=3.1e-11  Score=104.97  Aligned_cols=113  Identities=12%  Similarity=0.055  Sum_probs=80.2

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~   68 (259)
                      +|+|+.+...+...|.++.       .+.+|++.+++.+++++++|+   |+||+|...     .++|+++|+++|+|++
T Consensus        80 ~~~~~~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~~tkav~---~~~~~G~~~d~~~i~~~a~~~gi~vi~D~a  156 (379)
T PRK11658         80 SLTWVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITPRTKAII---PVHYAGAPADLDAIRAIGERYGIPVIEDAA  156 (379)
T ss_pred             CCcHHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcccCCeEEE---EeCCCCCcCCHHHHHHHHHHcCCeEEEECC
Confidence            4778888888888887662       356788999999988899865   677788886     3899999999999999


Q ss_pred             c-cCCCCC--CCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhh
Q 024997           69 Y-FWPHFA--PIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI  119 (259)
Q Consensus        69 y-~~~~~~--~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~  119 (259)
                      + ++....  .+ +...  +.+.||++.-.+++.+.|+++.+++++.++++...
T Consensus       157 ~a~g~~~~~~~~-g~~g--~~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~  207 (379)
T PRK11658        157 HAVGTYYKGRHI-GARG--TAIFSFHAIKNITCAEGGLVVTDDDELADRLRSLK  207 (379)
T ss_pred             CccCCeECCeec-CCCC--CEEEeCCCCCcCcccCceEEEECCHHHHHHHHHHH
Confidence            8 321111  11 1112  24566665544566678999987678888877644

>PRK06541 hypothetical protein; Provisional

Probab=99.41  E-value=2.5e-11  Score=107.83  Aligned_cols=207  Identities=13%  Similarity=0.097  Sum_probs=132.4

Q ss_pred             hhhcccCC---CCceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeEE
Q 024997           26 NLWGNASS---DTHLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEELM   86 (259)
Q Consensus        26 ~~l~~~~~---~~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i~   86 (259)
                      +.+++.+.   ++..+.++..| +++.|.+.         .++|+++|+++|+||++  |+.....+.    +..+ +  
T Consensus       208 ~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~P-D--  284 (460)
T PRK06541        208 DRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVP-D--  284 (460)
T ss_pred             HHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCC-C--
Confidence            44666552   34445566777 78888775         28999999999999999  532111111    1111 2  


Q ss_pred             EeccccccCCCcc-eEEEEEecCHHHHHHHHHh----hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 024997           87 IFTISKLTGHAGS-RFGWAVIKDEAVYQRMSAY----ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRW  161 (259)
Q Consensus        87 ~~S~SK~~g~~G~-R~G~i~~~~~~~~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  161 (259)
                      +-++||.++ .|+ ++|+++++ +++.+.+...    ....+.+.+++..+++.+.++...   .+    ...++++++.
T Consensus       285 ivt~gK~l~-~G~~pigav~~~-~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~---~~----~~~~~~~~~g  355 (460)
T PRK06541        285 IITCAKGIT-SGYSPLGAMIAS-DRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFE---RE----GLLDHVRDNE  355 (460)
T ss_pred             EEEeccccc-CCccceeEEEEc-HHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHH---hc----cHHHHHHHHH
Confidence            336999998 887 99999999 6998877532    123467788888888888887531   11    2367778888


Q ss_pred             HHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-C-------c-------hHHHHHHHHHcCeeeecCCc
Q 024997          162 ENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-E-------E-------DKDCYGILKAAKIIGREGKK  226 (259)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~-------~~~~~~ll~~~gi~~~~g~~  226 (259)
                      +++.+.|+++....          .+..+...|.++ -+.+.. .       .       ...+...+.++||.+.+.  
T Consensus       356 ~~l~~~L~~l~~~~----------~v~~vrg~Gl~~-~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--  422 (460)
T PRK06541        356 PAFRATLEKLLDLP----------IVGDVRGDGYFY-GIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRAD--  422 (460)
T ss_pred             HHHHHHHHHhhcCC----------CeEEEEecceEE-EEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEec--
Confidence            88888887653211          022233443333 333311 0       0       013334455789999872  


Q ss_pred             ccCCCCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          227 FRAEARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       227 f~~~~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                       ..+.+.+||+..  .++++++++++++.+.+++
T Consensus       423 -~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~  455 (460)
T PRK06541        423 -DRGDPVVQLAPPLISGQEEFDEIEQILRSVLTE  455 (460)
T ss_pred             -CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence             113478999986  5999999999999988753

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.40  E-value=4.5e-11  Score=102.64  Aligned_cols=205  Identities=15%  Similarity=0.085  Sum_probs=136.9

Q ss_pred             CCCceEEEEcCCCCCChhhHHHhhcCCCcEEEeeccc-cCCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHH
Q 024997           33 SDTHLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAY-FWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAV  111 (259)
Q Consensus        33 ~~~~~~i~i~~p~NPtG~~~~~la~~~~~~vi~De~y-~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~  111 (259)
                      ++++++|.+++-.|.||...+++++.+++++++|.+. ++.....+ +..+  +++.|..|.+|.+|  +|++++. +++
T Consensus       128 ~~~~~~v~~th~ETstGv~~~~l~~~~~~l~iVDavss~g~~~id~-~~~d--~~~~ssqK~lgP~G--lg~l~~s-~~~  201 (349)
T TIGR01364       128 SEDAAYVHYCANETIHGVEFRELPDVKNAPLVADMSSNILSRPIDV-SKFG--LIYAGAQKNIGPAG--LTVVIVR-KDL  201 (349)
T ss_pred             CCCCCEEEEcCCCCcccEecceecccCCCeEEEEccccccCccCCH-HHcc--EEEEecccccCCCc--eEEEEEC-HHH
Confidence            5678998999999999999889999999999999977 22222222 2233  89999999999998  9999999 688


Q ss_pred             HHHHHHh-------h----hhhcC-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q 024997          112 YQRMSAY-------I----SLNTM-GVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEI  179 (259)
Q Consensus       112 ~~~~~~~-------~----~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  179 (259)
                      ++++...       .    ..... .++...-++..++++...+.   .-++.+.++.++..+.+.+.|++++++.....
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~---gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~  278 (349)
T TIGR01364       202 LGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQ---GGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPV  278 (349)
T ss_pred             HhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHhCCCeeccCC
Confidence            7765321       1    01112 23344444555555543211   02677888999999999999998864211100


Q ss_pred             cccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHh
Q 024997          180 APQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l  256 (259)
                      .+         ...++..+.+.+++. ..+.+...+.+.|+.+.+|...   .+.+|+|+..  +.++++.+++.|+++.
T Consensus       279 ~~---------~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~~---~g~vRvS~~~~nt~edid~l~~al~~~~  346 (349)
T TIGR01364       279 DP---------RNRSRMNVVFTLGNEELEKRFLKEAEERGLVSLKGHRS---VGGMRASIYNAMPLEGVQALVDFMKEFQ  346 (349)
T ss_pred             CH---------HHcCCeEEEEecCChhHhHHHHHHHHHCCCcccCCccc---cCeeEEECcCCCCHHHHHHHHHHHHHHH
Confidence            00         012223344444432 1244445666789987777652   3689999866  8999999999999987


Q ss_pred             hh
Q 024997          257 SK  258 (259)
Q Consensus       257 ~~  258 (259)
                      ++
T Consensus       347 ~~  348 (349)
T TIGR01364       347 KK  348 (349)
T ss_pred             Hh
Confidence            65

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=99.40  E-value=5.2e-13  Score=109.41  Aligned_cols=235  Identities=12%  Similarity=0.074  Sum_probs=153.6

Q ss_pred             CCCcccchhhhhhccCccccc--------ccChhhhcccC---CCCceEEEEcCCCCCChhhH--------HHhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDYKF--------EGEANLWGNAS---SDTHLVEFVTAPNNPDGQMN--------KAVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~--------~~d~~~l~~~~---~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~   61 (259)
                      +|+|.++..+....|..+..|        ++|.+.+-+.+   .+...+++-...|||||.-.        .++.++.+.
T Consensus       153 ~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~  232 (427)
T KOG1411|consen  153 DPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNL  232 (427)
T ss_pred             CCcccccCccccccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccc
Confidence            699999999999999877221        56666554444   23444545566799999876        267789999


Q ss_pred             EEEeeccc--cC-CCC-------CCCCCCCCCeEEEeccccccCCCcceEEEE--EecCHHHHH----HHHHhhhhhcCC
Q 024997           62 KSIYDHAY--FW-PHF-------APIPAPADEELMIFTISKLTGHAGSRFGWA--VIKDEAVYQ----RMSAYISLNTMG  125 (259)
Q Consensus        62 ~vi~De~y--~~-~~~-------~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i--~~~~~~~~~----~~~~~~~~~~~~  125 (259)
                      +-+.|.+|  |+ .+.       ..+.....++++..|++|-+|+-|=|+|.+  ++.+++...    +++...+.+..+
T Consensus       233 ~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSn  312 (427)
T KOG1411|consen  233 LPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSN  312 (427)
T ss_pred             cchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccC
Confidence            99999999  52 111       111134566899999999999999999975  455555444    455566666667


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc-ceeeCCCCCeeEEEecCC
Q 024997          126 VSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTY-FKKIRPPSPAYAWVKCER  204 (259)
Q Consensus       126 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  204 (259)
                      ++.-...++..++.+      .+..+++...++-..+++...-+.+.    ..|.-.+.+. |..+..+-|+|.+-.+  
T Consensus       313 PP~hGArIv~~Il~d------~~l~~~W~~evk~MadRi~~mR~~L~----d~L~~~gs~~~W~hI~~QIGMF~fTgl--  380 (427)
T KOG1411|consen  313 PPLHGARIVATILSD------PDLKNQWLGEVKGMADRIISMRQQLF----DALEKEGSPGNWSHITKQIGMFCFTGL--  380 (427)
T ss_pred             CCccchhhhhhccCC------hHHHHHHHHHHHHHHHhhhhhHHHHh----HHhhcCCCCccHHHHHHhhheeeecCC--
Confidence            666666667777763      23334444433333333322221111    1111111221 6667788899988766  


Q ss_pred             CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHhh
Q 024997          205 EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       205 ~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l~  257 (259)
                       +.+.+..+.++++|.+.-     .+    |||++. +..+..++.+.|..+.+
T Consensus       381 -~peQv~~l~ke~~iYmT~-----dG----RiS~aG~ss~nV~yLa~aih~vtk  424 (427)
T KOG1411|consen  381 -NPEQVDWLTKEYHIYLTK-----DG----RISMAGLSSSNVPYLADAIHAVTK  424 (427)
T ss_pred             -CHHHHHHHHhhheeeecc-----Cc----eEeeccccccCCcccchhhHhHhc
Confidence             588999999999998864     34    999977 77777777777766543

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.39  E-value=4.1e-11  Score=106.48  Aligned_cols=214  Identities=14%  Similarity=0.030  Sum_probs=132.3

Q ss_pred             cccChhhhcccCCC-CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc-CCCCCCC-C-CCCCCeEEEeccc
Q 024997           21 FEGEANLWGNASSD-THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF-WPHFAPI-P-APADEELMIFTIS   91 (259)
Q Consensus        21 ~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~-~~~~~~~-~-~~~~~~i~~~S~S   91 (259)
                      ..+|.++|++.+.+ +++++++.  ++.+|...     .++|+++|+++++|+++. +.-.... + ...+.+++++|++
T Consensus       167 g~id~~~L~~~l~~~~~~lvi~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~h  244 (452)
T PTZ00094        167 GLIDYDKLEELAKAFRPKLIIAG--ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTH  244 (452)
T ss_pred             CCcCHHHHHHHHHHhCCCEEEEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCc
Confidence            35788999998843 66665553  33488776     389999999999999982 2111111 1 1224689999999


Q ss_pred             ccc-CCCcceEEEEEecCHHHHHHHHHhhh----hhcC-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 024997           92 KLT-GHAGSRFGWAVIKDEAVYQRMSAYIS----LNTM-GVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLS  165 (259)
Q Consensus        92 K~~-g~~G~R~G~i~~~~~~~~~~~~~~~~----~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (259)
                      |.+ |..|   |++.+. +++.+.+.....    .... +++...-++...+++..    .....++..+++.++.+.+.
T Consensus       245 K~l~GP~G---g~l~~~-~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~----~~~~~~~~~~~i~~l~~~l~  316 (452)
T PTZ00094        245 KSLRGPRS---GLIFYR-KKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEV----QSPEWKEYAKQVLKNAKALA  316 (452)
T ss_pred             cCCCCCCc---eEEEEe-cccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHH----hChhHHHHHHHHHHHHHHHH
Confidence            977 5554   888887 465554433221    1111 33344444455555542    12234566788899999999


Q ss_pred             HHHHhcCCCccccccccccccceeeCCCCCeeEEEecC--CCchHHHHHHHHHcCeee-ecCCcccC---CCCeEEEEee
Q 024997          166 KIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCE--REEDKDCYGILKAAKIIG-REGKKFRA---EARFVRLSLL  239 (259)
Q Consensus       166 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~~-~~g~~f~~---~~~~~Ris~~  239 (259)
                      +.|++. ++.+..  +         ..... ..++.+.  ..+.+.+..+|+++||.+ +++..+..   .++.+|+|+.
T Consensus       317 ~~L~~~-g~~v~~--~---------~~~~~-~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~  383 (452)
T PTZ00094        317 AALEKR-GYDLVT--G---------GTDNH-LVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTP  383 (452)
T ss_pred             HHHHhC-CcEEec--C---------CCCCc-eEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCH
Confidence            998764 222210  0         01111 1333333  335678888888899999 55555442   3579999984


Q ss_pred             c------ChhhHHHHHHHHHHHhh
Q 024997          240 K------SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       240 ~------~~~~~~~~~~~l~~~l~  257 (259)
                      .      ++++++.+++.|.+++.
T Consensus       384 ~~tt~g~~~~di~~l~~~l~~~~~  407 (452)
T PTZ00094        384 ALTTRGAKEKDFKFVADFLDRAVK  407 (452)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHH
Confidence            3      38999999999988775

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.39  E-value=3.1e-11  Score=106.43  Aligned_cols=208  Identities=10%  Similarity=0.023  Sum_probs=129.1

Q ss_pred             hhhhcccCC---CCceEEEEcCC--CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEE
Q 024997           25 ANLWGNASS---DTHLVEFVTAP--NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMI   87 (259)
Q Consensus        25 ~~~l~~~~~---~~~~~i~i~~p--~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~   87 (259)
                      .+.+++.+.   ++..+++ ..|  +...|...         .++|+++|+++|+||++  |+.....+. ...+...-+
T Consensus       186 ~~~l~~~l~~~~~~iaavi-~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~pDi  264 (423)
T PRK05964        186 LDALEALLEKHAGEIAAFI-VEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDI  264 (423)
T ss_pred             HHHHHHHHHhCCCcEEEEE-EecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCCCe
Confidence            556666662   3455644 455  56666655         28999999999999998  432221111 111112224


Q ss_pred             eccccccCCCcceEEEEEecCHHHHHHHHHh------hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 024997           88 FTISKLTGHAGSRFGWAVIKDEAVYQRMSAY------ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRW  161 (259)
Q Consensus        88 ~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  161 (259)
                      .++||.++..++++|+++++ +++.+.+...      ....+++.+++...++.+.++...   .+++    .+++.+.-
T Consensus       265 ~~~~K~l~gG~~p~~av~~~-~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~---~~~~----~~~~~~~g  336 (423)
T PRK05964        265 MCLSKGLTGGYLPLAATLCT-AEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFE---DEPV----LERVAALS  336 (423)
T ss_pred             eeeehhhhcCcccceEEEEc-HHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHH---hcCH----HHHHHHHH
Confidence            58899997444899999988 7999988532      123455678888888888887531   2233    45566666


Q ss_pred             HHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCc----hHHHHHHHHHcCeeeecCCcccCCCCeEEEE
Q 024997          162 ENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREE----DKDCYGILKAAKIIGREGKKFRAEARFVRLS  237 (259)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris  237 (259)
                      +.+.+.|+++...     +     .+...... |..+.+.+...+    ...+...+.++||.+.+.     + +.+|++
T Consensus       337 ~~l~~~l~~l~~~-----~-----~i~~vrg~-Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~-----~-~~lR~~  399 (423)
T PRK05964        337 AGLAEGLEPFRDL-----P-----GVADVRVL-GAIGAVELDRPVLERDGPALRAFALERGVLLRPL-----G-NTIYLM  399 (423)
T ss_pred             HHHHHHHHhhccC-----C-----CeEEeecc-cEEEEEEeccCcchhHHHHHHHHHHHCCeEEEec-----C-CEEEEe
Confidence            6666666654311     0     02222333 333344443321    334455556789999862     2 579999


Q ss_pred             ee--cChhhHHHHHHHHHHHhhh
Q 024997          238 LL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       238 ~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      ..  .++++++.+++++++++++
T Consensus       400 p~l~~t~edId~~v~~l~~al~~  422 (423)
T PRK05964        400 PPYIITAEELDRITDAIVEVADE  422 (423)
T ss_pred             CCcccCHHHHHHHHHHHHHHHhh
Confidence            75  4999999999999998864

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.38  E-value=4.1e-11  Score=106.12  Aligned_cols=196  Identities=9%  Similarity=0.047  Sum_probs=122.7

Q ss_pred             CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCC--C--C-CCCCeEEEeccccccCCC
Q 024997           34 DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPI--P--A-PADEELMIFTISKLTGHA   97 (259)
Q Consensus        34 ~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~--~--~-~~~~~i~~~S~SK~~g~~   97 (259)
                      ++..+|++.......|.+.         .++|+++|+++|.||++  |+......  .  + .+|    +-+++|.++ .
T Consensus       206 ~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pD----i~t~gK~l~-~  280 (445)
T PRK08593        206 DEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPD----LMSFGKSLA-G  280 (445)
T ss_pred             CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCC----Eeeeccccc-C
Confidence            4567756665566666664         28999999999999998  53221111  0  1 122    558999998 7


Q ss_pred             cceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 024997           98 GSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQ  177 (259)
Q Consensus        98 G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  177 (259)
                      |+++|+++++ +++.+.+.......+.+.+++..+++.+.++...+   ++    ..+++++.-+++.+.|+++..    
T Consensus       281 G~p~gav~~~-~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~---~~----l~~~~~~~g~~l~~~L~~l~~----  348 (445)
T PRK08593        281 GMPMSAIVGR-KEIMESLEAPAHLFTTGANPVSCAAALATIDMIED---ES----LLQRSAEKGEYARKRFDQWVS----  348 (445)
T ss_pred             CcccEEEEEc-HHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHh---cc----HHHHHHHHHHHHHHHHHHHHh----
Confidence            8999999999 79999886444445778889998888888875421   12    344555555566666654321    


Q ss_pred             cccccccccceeeCCCCCeeEEEecCC------Cc---hHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHH
Q 024997          178 EIAPQYCTYFKKIRPPSPAYAWVKCER------EE---DKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFD  246 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~  246 (259)
                      .++     .+..+...|.+ ..+.+..      .+   ...+...+.++||.+.+.     ..+.+|++...  ++++++
T Consensus       349 ~~~-----~v~~vrG~Gl~-~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-----~~~~lr~~p~l~~t~~~id  417 (445)
T PRK08593        349 KYN-----FVGDVRGYGLS-IGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAV-----AGNVLRFQPPLVITYEQLD  417 (445)
T ss_pred             cCC-----cEEEEeccceE-EEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEecc-----CCCEEEEECCCccCHHHHH
Confidence            000     02222323222 2232211      01   123334445689988652     23688988753  999999


Q ss_pred             HHHHHHHHHhh
Q 024997          247 LLLHRLDELIS  257 (259)
Q Consensus       247 ~~~~~l~~~l~  257 (259)
                      .+++++.+.++
T Consensus       418 ~~~~~l~~~l~  428 (445)
T PRK08593        418 TALNTIEQAFT  428 (445)
T ss_pred             HHHHHHHHHHH
Confidence            99999998875

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.38  E-value=6.6e-11  Score=102.05  Aligned_cols=206  Identities=15%  Similarity=0.069  Sum_probs=132.1

Q ss_pred             ccCCCCceEEEEcCCCCCChhhHHHhhcCCCcEEEeecccc-CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecC
Q 024997           30 NASSDTHLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAYF-WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKD  108 (259)
Q Consensus        30 ~~~~~~~~~i~i~~p~NPtG~~~~~la~~~~~~vi~De~y~-~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~  108 (259)
                      ..+++++++|.+++-+|.||..++++++.+|+++++|.+.. +.....+ +..+  +.+.|..|.+|.+|  +|++++. 
T Consensus       133 ~~~~~~~~lV~~~h~~t~tG~~~~~i~~~~g~~~~VDa~qs~g~~~idv-~~~~--~~~ss~~K~lGP~G--~g~l~~~-  206 (355)
T cd00611         133 WDLAPDAAYVHYCSNETIHGVEFDEVPDTGGVPLVADMSSNILSRPIDV-SKFG--VIYAGAQKNLGPAG--VTVVIVR-  206 (355)
T ss_pred             cCCCCCCCEEEEeCCcccccEEcceecccCCCeEEEEccccccCCCCCH-HHhC--EEEeecccccCCCc--eEEEEEC-
Confidence            34567899999999999999998889999999999999873 2111222 2222  45666899999888  8999999 


Q ss_pred             HHHHHHHHHh-------h----hhhcCCC-CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 024997          109 EAVYQRMSAY-------I----SLNTMGV-SRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSL  176 (259)
Q Consensus       109 ~~~~~~~~~~-------~----~~~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  176 (259)
                      +++++++...       .    .....+. +.....+..++++...+   ..-++.+.++.++..+.+.+.|++++++..
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~---~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~  283 (355)
T cd00611         207 KDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKE---QGGVEAMEKRNRQKAQLLYDTIDNSNGFYR  283 (355)
T ss_pred             HHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence            6887765431       1    0001233 33344455555554311   102567788899999999999998854210


Q ss_pred             ccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHH
Q 024997          177 QEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLD  253 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~  253 (259)
                      ....+         ....+..+.+.++.. ..+.....+.+.|+...+|..   ..+.+|+|+..  +.++++.+++.|+
T Consensus       284 ~~~~~---------~~rs~~vvsf~~~~~~l~~~~~~~~~r~G~~~~~~~~---~~g~vR~S~~~~nt~edi~~l~~al~  351 (355)
T cd00611         284 GPVDK---------RARSRMNVPFRLGKEELEKEFLKEAEAAGMIGLKGHR---SVGGIRASIYNALSLEGVQALADFMK  351 (355)
T ss_pred             cCCCH---------HHcCceEEEEEcCChhhhHHHHHHHHHCCCcccCCCc---ccCeEEEEccCCCCHHHHHHHHHHHH
Confidence            00000         012334344555442 113333455568887666554   23789999977  9999999999998


Q ss_pred             HHh
Q 024997          254 ELI  256 (259)
Q Consensus       254 ~~l  256 (259)
                      ++-
T Consensus       352 ~~~  354 (355)
T cd00611         352 EFQ  354 (355)
T ss_pred             HHh
Confidence            853

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.37  E-value=4.4e-11  Score=105.88  Aligned_cols=198  Identities=14%  Similarity=0.128  Sum_probs=121.8

Q ss_pred             CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCC--CCCC--CCCCCeEEEeccccccCCCc
Q 024997           34 DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHF--APIP--APADEELMIFTISKLTGHAG   98 (259)
Q Consensus        34 ~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~--~~~~--~~~~~~i~~~S~SK~~g~~G   98 (259)
                      ++..++++...++..|.+.         .++|+++|+++|.||++  |+...  ....  +..+ +  +-++||.++ .|
T Consensus       205 ~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~P-D--iv~~gK~l~-~G  280 (442)
T TIGR00709       205 DKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEP-D--FVVMSKAVG-GG  280 (442)
T ss_pred             CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCC-c--EEEEccccc-CC
Confidence            3556656665555556553         28999999999999999  53211  1111  1111 2  333899998 59


Q ss_pred             ceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 024997           99 SRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQE  178 (259)
Q Consensus        99 ~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  178 (259)
                      +++|+++++ ++ .+.+.......+++.+++.++++.+.|+...+   ++    ..+.++++.+.+.+.|+++..    .
T Consensus       281 ~Pigav~~~-~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~---~~----l~~~~~~~g~~l~~~L~~l~~----~  347 (442)
T TIGR00709       281 LPLAVLLIA-PE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKD---DN----LAQNAQERGERITSFLDDMIK----E  347 (442)
T ss_pred             cccEEEEEc-hH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHh---cC----HHHHHHHHHHHHHHHHHHHHH----h
Confidence            999999998 57 45554333446788999999999999986421   22    345666666666666665421    0


Q ss_pred             ccccccccceeeCCCCCeeEEEecCCC------------c---hHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--C
Q 024997          179 IAPQYCTYFKKIRPPSPAYAWVKCERE------------E---DKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--S  241 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~  241 (259)
                      .+     .+..+... |...-+.+...            +   ...+...+.++||.+.+..   ...+.+|+...-  +
T Consensus       348 ~~-----~v~~vrG~-Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~---~~~~~l~~~Ppl~it  418 (442)
T TIGR00709       348 HP-----CIGNVRGR-GLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGG---REGEVFRLLCPITID  418 (442)
T ss_pred             CC-----Ceeeeecc-ceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecC---CCCCEEEEECCCCCC
Confidence            00     02222333 33333333210            0   1234444557899987632   124788988743  9


Q ss_pred             hhhHHHHHHHHHHHhh
Q 024997          242 QDDFDLLLHRLDELIS  257 (259)
Q Consensus       242 ~~~~~~~~~~l~~~l~  257 (259)
                      +++++++++++.+.++
T Consensus       419 ~~ei~~~~~~l~~~l~  434 (442)
T TIGR00709       419 QEECEEGISRFKQAVE  434 (442)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998875

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.35  E-value=1.5e-10  Score=100.70  Aligned_cols=233  Identities=13%  Similarity=0.032  Sum_probs=136.7

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCC----CCceEEEEcCCCCCChhhH-----HHhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASS----DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~----~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi   64 (259)
                      +|+|+.+...+...|.++.       .+.+|++++++.++    +++++|++   +||+|...     .++|+++|++||
T Consensus        76 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~---~~~~G~~~~~~~i~~l~~~~~~~lI  152 (380)
T TIGR03588        76 PITFVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVP---VDFAGKSVDMQAIAALAKKHGLKII  152 (380)
T ss_pred             CcchHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEE---eCCCCccCCHHHHHHHHHHcCCEEE
Confidence            3678888777777787652       34678888998887    68888775   45678665     388999999999


Q ss_pred             eeccc-cCCCC--CCCCCCCCCeEEEeccc--cccCCCcceEEEEEecCHHHHHHHHHhhhhh-----------------
Q 024997           65 YDHAY-FWPHF--APIPAPADEELMIFTIS--KLTGHAGSRFGWAVIKDEAVYQRMSAYISLN-----------------  122 (259)
Q Consensus        65 ~De~y-~~~~~--~~~~~~~~~~i~~~S~S--K~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~-----------------  122 (259)
                      +|+++ ++..+  ..+......++.+.|++  |.++.+  .-|+++..++++.+.++......                 
T Consensus       153 ~D~a~a~g~~~~~~~~g~~~~~d~~~~S~~~~K~~~~~--~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  230 (380)
T TIGR03588       153 EDASHALGAEYGGKPVGNCRYADATVFSFHPVKIITTA--EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWY  230 (380)
T ss_pred             EECCCcccCccCCEeCCCccccceEEEecCCCCccccc--CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcce
Confidence            99998 22111  11111012267777776  888632  35888887778888776543211                 


Q ss_pred             --------cCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCC
Q 024997          123 --------TMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPS  194 (259)
Q Consensus       123 --------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (259)
                              ....+.+....+..-|+         .+++..++-+++.+.+.+.|++++.+.....+.         ....
T Consensus       231 ~~~~~~g~n~~m~~l~aa~g~~qL~---------~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~---------~~~~  292 (380)
T TIGR03588       231 YEQQELGFNYRMTDIQAALGLSQLK---------KLDRFVAKRREIAARYDRLLKDLPYFTPLTIPL---------GSKS  292 (380)
T ss_pred             eeeeccccccCccHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCC---------CCEe
Confidence                    01123333233333333         234455566666777777777665432110000         0001


Q ss_pred             Cee-EEEecCC---CchHHHHHHHHHcCeeeecCCcc-----------cC---------CCCeEEEEeec--ChhhHHHH
Q 024997          195 PAY-AWVKCER---EEDKDCYGILKAAKIIGREGKKF-----------RA---------EARFVRLSLLK--SQDDFDLL  248 (259)
Q Consensus       195 ~~~-~~~~~~~---~~~~~~~~ll~~~gi~~~~g~~f-----------~~---------~~~~~Ris~~~--~~~~~~~~  248 (259)
                      .++ ..+.+..   .+.+.+.+.|+++||.++.....           ..         ....+++.+..  ++++++..
T Consensus       293 ~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i  372 (380)
T TIGR03588       293 AWHLYPILLDQEFGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRV  372 (380)
T ss_pred             EEEEEEEEECCcCCCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHH
Confidence            111 1222321   24566677778899988743211           00         02457777643  88999999


Q ss_pred             HHHHHHHh
Q 024997          249 LHRLDELI  256 (259)
Q Consensus       249 ~~~l~~~l  256 (259)
                      ++.|++++
T Consensus       373 ~~~l~~~~  380 (380)
T TIGR03588       373 VETLRKVL  380 (380)
T ss_pred             HHHHHHhC
Confidence            99998875

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.34  E-value=1.8e-10  Score=99.49  Aligned_cols=214  Identities=13%  Similarity=0.058  Sum_probs=136.4

Q ss_pred             hhcccCCCCceEEEEcCCCCCChhhHH--HhhcCCCcEEEeecccc-CCCCCCCCCCCCCeEEEeccccccCCCcceEEE
Q 024997           27 LWGNASSDTHLVEFVTAPNNPDGQMNK--AVLKGPYAKSIYDHAYF-WPHFAPIPAPADEELMIFTISKLTGHAGSRFGW  103 (259)
Q Consensus        27 ~l~~~~~~~~~~i~i~~p~NPtG~~~~--~la~~~~~~vi~De~y~-~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~  103 (259)
                      .++..++++++++.+++-+|.||.+.+  ++++++|+++|+|.+.. +.....+.   +.++++.|..|.+|.+|- ++.
T Consensus       120 ~~~~~~~~~~~lV~~~h~et~tG~~~pi~~I~~~~g~~~iVDavqs~g~~~idv~---~~D~~~~s~~K~lg~~~G-l~~  195 (361)
T TIGR01366       120 APEPQADPGVDVIAWAHNETSTGVAVPVRRPEGSDDALVVIDATSGAGGLPVDIA---ETDVYYFAPQKNFASDGG-LWL  195 (361)
T ss_pred             CCCCccCCCCCEEEEcccCCccceecccccccccCCCeEEEEcCccccCCCCCHH---HCCEEEEEchhhcCCCCc-eEE
Confidence            344455678999999999999999994  88899999999999872 22222221   258899999999987742 666


Q ss_pred             EEecCHHHHHHHHHhhh--------------------hhcCCCCHHHHH-HHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 024997          104 AVIKDEAVYQRMSAYIS--------------------LNTMGVSRECQL-RAFKLLKVVLEDGGNNIFEFGYNTMKKRWE  162 (259)
Q Consensus       104 i~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (259)
                      +++. +++++++.....                    ..+.+.+++... +..++++...+.   .-++...++.++..+
T Consensus       196 ~~~s-~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~---gg~e~~~~r~~~l~~  271 (361)
T TIGR01366       196 AIMS-PAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGN---GGLDWAVARTADSSS  271 (361)
T ss_pred             EEEC-HHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHH
Confidence            6667 577766552110                    112333333222 344444433211   114556788889999


Q ss_pred             HHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEec-CCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-
Q 024997          163 NLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKC-EREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-  240 (259)
Q Consensus       163 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-  240 (259)
                      .+.+.+++++.+....-.+         ...+.....+.+ ++.+.+.+.+.|+++||.+.++... .+.+.+|+|+.. 
T Consensus       272 ~l~~~l~~~~~~~~~~~~~---------~~~s~~v~~v~~~~g~~~~~v~~~L~~~gI~i~~~~~~-l~~~~vRis~~~~  341 (361)
T TIGR01366       272 RLYSWAQERPYATPFVTDP---------GKRSQVVGTIDFVDDIDAATVAKILRANGIVDTEPYRK-LGRNQLRVAMFPA  341 (361)
T ss_pred             HHHHHHHhCCCcccCCCCh---------hhcccceEEEECCCccCHHHHHHHHHHCCCeeccCccc-cCCCcEEEEcCCC
Confidence            9999999887533211000         001111122222 2235666767777889999876422 235789999966 


Q ss_pred             -ChhhHHHHHHHHHHHhhh
Q 024997          241 -SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       241 -~~~~~~~~~~~l~~~l~~  258 (259)
                       +.++++.+++.|++++++
T Consensus       342 ~t~~di~~l~~al~~~~~~  360 (361)
T TIGR01366       342 IDPDDVEALTECVDWVVER  360 (361)
T ss_pred             CCHHHHHHHHHHHHHHHhh
Confidence             899999999999998764

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.33  E-value=1e-10  Score=102.60  Aligned_cols=220  Identities=11%  Similarity=0.100  Sum_probs=139.2

Q ss_pred             ccccChhhhcccCCC---CceEEEEcCCC-CCChhhH-----HHhhcCCCcEEEeeccc-c-CCCCCCC--CCC-C-CCe
Q 024997           20 KFEGEANLWGNASSD---THLVEFVTAPN-NPDGQMN-----KAVLKGPYAKSIYDHAY-F-WPHFAPI--PAP-A-DEE   84 (259)
Q Consensus        20 ~~~~d~~~l~~~~~~---~~~~i~i~~p~-NPtG~~~-----~~la~~~~~~vi~De~y-~-~~~~~~~--~~~-~-~~~   84 (259)
                      .|.+|++.|++++++   +..++++++|+ .++|..-     .++|+++|+++|+|++| + .+....+  ... . .-.
T Consensus       186 ~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~Grad  265 (444)
T TIGR03531       186 ELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIKVGRVD  265 (444)
T ss_pred             CCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhccccccCCC
Confidence            378899999999864   56677887776 4555443     48999999999999999 2 1122112  111 1 226


Q ss_pred             EEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 024997           85 LMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENL  164 (259)
Q Consensus        85 i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (259)
                      +++.|++|.+..+|+ -|.++..++++.+.+......  ...+.+.|.+...++..     ..+.+.+..++..++++.+
T Consensus       266 ~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~y~g--~~~~s~~~~~~~~ll~~-----G~~g~~~li~~~~~~a~~l  337 (444)
T TIGR03531       266 AVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKSYPG--RASASPSLDVLITLLSL-----GSKGYLELLKERKEMYKYL  337 (444)
T ss_pred             eEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHhccC--CCCChHHHHHHHHHHHh-----CHHHHHHHHHHHHHHHHHH
Confidence            778899999987776 344446567888888764322  23445677777777763     5667888899999999999


Q ss_pred             HHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---chHHHHHHHHHcCee----eecCC-------cc---
Q 024997          165 SKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---EDKDCYGILKAAKII----GREGK-------KF---  227 (259)
Q Consensus       165 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gi~----~~~g~-------~f---  227 (259)
                      .+.|+++..    ...+     -....|...+-+.+.+...   +...+-.+|-..+|.    |.||.       .|   
T Consensus       338 ~~~L~~l~~----~~~~-----~~~~~~~n~is~~~~~~~~~~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~~~~~~~~  408 (444)
T TIGR03531       338 KELLQKLAE----RHGE-----RLLDTPENPISSAMTLSTLKGKDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGCEFKGY  408 (444)
T ss_pred             HHHHHHHHH----hhCc-----EeecCCCCceeEEEecccccccCHHHHHHHHHhCCCCCceeecCCCceEECCEEeecc
Confidence            999887651    1111     0011344555555555422   344555555456662    45665       22   


Q ss_pred             cC-----CCCeEEEE--eecChhhHHHHHHHHHHHh
Q 024997          228 RA-----EARFVRLS--LLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       228 ~~-----~~~~~Ris--~~~~~~~~~~~~~~l~~~l  256 (259)
                      +.     +-.|+-++  ++.+.++++..+++|.+.+
T Consensus       409 ~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~  444 (444)
T TIGR03531       409 GSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL  444 (444)
T ss_pred             cccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence            21     11233333  4558999999999998753

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.30  E-value=1.1e-10  Score=94.02  Aligned_cols=199  Identities=13%  Similarity=0.094  Sum_probs=124.3

Q ss_pred             CCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc---c-CCCCCCCC----CCCCCeEEEeccccccC-CCc
Q 024997           33 SDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY---F-WPHFAPIP----APADEELMIFTISKLTG-HAG   98 (259)
Q Consensus        33 ~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y---~-~~~~~~~~----~~~~~~i~~~S~SK~~g-~~G   98 (259)
                      +.+-++++.-..-...|.+.+     +|+++||+++++||++   | +.......    -..+.+++.+|++|.+| ..|
T Consensus       191 k~r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G  270 (417)
T KOG1359|consen  191 KMRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASG  270 (417)
T ss_pred             hheEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCC
Confidence            335677666667788888874     8999999999999998   3 43333332    24677899999999997 677


Q ss_pred             ceEEEEEecCHHHHHHHHHhhhhhc--CCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 024997           99 SRFGWAVIKDEAVYQRMSAYISLNT--MGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSL  176 (259)
Q Consensus        99 ~R~G~i~~~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  176 (259)
                         ||.++| +.+++.++...+...  ...+|..-..+.+++.-.+      .-.....+++.+..++.+.++.-+    
T Consensus       271 ---Gyttgp-~~li~llrqr~RpylFSnslppavV~~a~ka~dllm------~s~~~i~~~~a~~qrfr~~me~aG----  336 (417)
T KOG1359|consen  271 ---GYTTGP-KPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLM------VSSKEIQSRQANTQRFREFMEAAG----  336 (417)
T ss_pred             ---CCccCC-hhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHhcC----
Confidence               999999 899998877655332  2222211122333333211      112235667788888888877533    


Q ss_pred             ccccccccccceeeCCCCCe-eEEEecCCCchHHHHHHHHHcCeeeecCCccc-CC--CCeEEEEeec--ChhhHHHHHH
Q 024997          177 QEIAPQYCTYFKKIRPPSPA-YAWVKCEREEDKDCYGILKAAKIIGREGKKFR-AE--ARFVRLSLLK--SQDDFDLLLH  250 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~-~~--~~~~Ris~~~--~~~~~~~~~~  250 (259)
                                +.......++ -+.+.-......+..++| +.||.|.. -.+. .+  ...+|+.++.  ++++++++++
T Consensus       337 ----------ftIsg~~hPI~pv~lGda~lA~~~ad~lL-k~Gi~Vig-fs~PvVP~gkariRVqiSAaHt~edid~~i~  404 (417)
T KOG1359|consen  337 ----------FTISGASHPICPVMLGDARLASKMADELL-KRGIYVIG-FSYPVVPKGKARIRVQISAAHTEEDIDRLIE  404 (417)
T ss_pred             ----------ceecCCCCCccceecccHHHHHHHHHHHH-hcCceEEe-ecCCcCCCCceEEEEEEehhcCHHHHHHHHH
Confidence                      2222211111 111111222467788888 57998864 3333 23  4456666654  9999999999


Q ss_pred             HHHHHhh
Q 024997          251 RLDELIS  257 (259)
Q Consensus       251 ~l~~~l~  257 (259)
                      ++.++..
T Consensus       405 Af~~vgr  411 (417)
T KOG1359|consen  405 AFSEVGR  411 (417)
T ss_pred             HHHHHHH
Confidence            9987653

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.30  E-value=2.7e-10  Score=98.24  Aligned_cols=210  Identities=16%  Similarity=0.100  Sum_probs=137.0

Q ss_pred             hhcc-cCCCCceEEEEcCCCCCChhhHHHhhcCCCcEEEeeccc-cCCCCCCCCCCCCCeEEEeccccccCCCcceEEEE
Q 024997           27 LWGN-ASSDTHLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAY-FWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWA  104 (259)
Q Consensus        27 ~l~~-~~~~~~~~i~i~~p~NPtG~~~~~la~~~~~~vi~De~y-~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i  104 (259)
                      ++++ .+++++++|.+++-.+.||...+.+..-+|+++|+|.+. ++.....+ +..+  +++.|..|.+|.+|  +|++
T Consensus       132 ~~~~~~l~~~~~~V~~th~eTstGv~~~~i~~i~g~l~vVDavss~g~~~idv-~~~d--~~~~ssqK~lgP~G--lg~l  206 (360)
T PRK05355        132 PLDEWQLSDDAAYVHYTSNETIDGTEFHELPDTGDVPLVADMSSDILSRPIDV-SKFG--LIYAGAQKNIGPAG--LTIV  206 (360)
T ss_pred             ChhhccCCCCCCEEEEccCCCcceEecCcccccCCCcEEEEcCccccCccCCH-HHcc--EEEEeccccccCCc--eEEE
Confidence            3444 666788999999999999999843433389999999987 22222222 2233  88999999999888  8999


Q ss_pred             EecCHHHHHHHHHh-----------hhhhcCC-CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcC
Q 024997          105 VIKDEAVYQRMSAY-----------ISLNTMG-VSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSN  172 (259)
Q Consensus       105 ~~~~~~~~~~~~~~-----------~~~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (259)
                      ++. +++++++...           ......+ ++...-++..++++...+   ..-++.+.++.++..+.+.+.|+.++
T Consensus       207 ~~s-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~---~gG~e~i~~r~~~l~~~l~~~l~~~~  282 (360)
T PRK05355        207 IVR-EDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKE---QGGVAAMEKRNQEKAALLYDAIDSSD  282 (360)
T ss_pred             EEC-HHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999 6887765441           1111122 334444555556654321   10267778899999999999999877


Q ss_pred             CCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHH
Q 024997          173 RFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLL  249 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~  249 (259)
                      .+... .++         ...++..+.+.+++. ..+.+...+.++|+.+.+|..   ..+.+|+|+..  +.++++.++
T Consensus       283 ~~~~~-~~~---------~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~---~~g~vRiS~~~~nt~eei~~l~  349 (360)
T PRK05355        283 FYRNP-VAP---------EDRSRMNVPFTLADEELDKKFLAEAKAAGLVGLKGHR---SVGGMRASIYNAMPLEGVQALV  349 (360)
T ss_pred             CcccC-CCh---------hhcCCcEEEEEcCChHHHHHHHHHHHHCCCcccCCCC---ccCcEEEECCCCCCHHHHHHHH
Confidence            32110 000         112333445555543 223444455678999877663   23789999876  899999999


Q ss_pred             HHHHHHhhh
Q 024997          250 HRLDELISK  258 (259)
Q Consensus       250 ~~l~~~l~~  258 (259)
                      +.|++++++
T Consensus       350 ~~l~~~~~~  358 (360)
T PRK05355        350 DFMKEFERR  358 (360)
T ss_pred             HHHHHHHHh
Confidence            999998764

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=6.5e-11  Score=100.42  Aligned_cols=224  Identities=13%  Similarity=0.030  Sum_probs=137.3

Q ss_pred             hhccCccccc-ccChhhhcccC-------CCC-----ceEE-EEcCCCCCChhhH--H---HhhcCCCcEEEeecccc--
Q 024997           12 DYFESVDYKF-EGEANLWGNAS-------SDT-----HLVE-FVTAPNNPDGQMN--K---AVLKGPYAKSIYDHAYF--   70 (259)
Q Consensus        12 ~~~g~~~~~~-~~d~~~l~~~~-------~~~-----~~~i-~i~~p~NPtG~~~--~---~la~~~~~~vi~De~y~--   70 (259)
                      ++.|+++.-| .-|+..||+.+       +|+     .+++ ++..-...-|.+-  +   .+++++.++++.||++-  
T Consensus       239 RLSgAtiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiG  318 (519)
T KOG1357|consen  239 RLSGATTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIG  318 (519)
T ss_pred             cccCceEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeecccccc
Confidence            3344444334 35566666554       222     2333 3333444555554  2   78899999999999982  


Q ss_pred             --CCCCCCC---C--CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh---hhcCCCCHHHHHHHHHHHHH
Q 024997           71 --WPHFAPI---P--APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS---LNTMGVSRECQLRAFKLLKV  140 (259)
Q Consensus        71 --~~~~~~~---~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~---~~~~~~~~~~q~~~~~~l~~  140 (259)
                        ++....+   .  +..+.+|.|++|+|+||.+|   ||+.++ +++++.++....   +.+..+++++|. ....++.
T Consensus       319 A~g~tGrgvce~~g~d~~dvDImMGtftKSfga~G---Gyiags-k~lid~lrt~s~~~~yat~~sppvaqq-~~ssl~~  393 (519)
T KOG1357|consen  319 AMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAG---GYIAGS-KELIDYLRTPSPSALYATSLSPPVAQQ-ILTSVKH  393 (519)
T ss_pred             ccCCCCcceeeccCCCchhheeecceehhhccccc---ceecCc-HHHHhhhccCCCceeecccCChHHHHH-HHHHHHh
Confidence              1222111   1  45667999999999999998   999999 899998876433   223445555555 4445555


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCee--EEEecCCCchHHHHHHHHHcC
Q 024997          141 VLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAY--AWVKCEREEDKDCYGILKAAK  218 (259)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~g  218 (259)
                      .+..+..+...+..+++.++...++..|...+.              .+........  +++..+..-..+-.+++ +++
T Consensus       394 i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gf--------------ivyG~~dSpVvplll~~~~k~~~f~r~~l-~~n  458 (519)
T KOG1357|consen  394 IMGEDGTNRGRQKIERLAENSRYFRWELQKMGF--------------IVYGNNDSPVVPLLLYGPAKIVAFSREML-ERN  458 (519)
T ss_pred             hcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcE--------------EEecCCCCCcceeeecCcccccHHHHHHH-hcC
Confidence            443345666788899999999999999987662              2222222221  12222222245555666 466


Q ss_pred             eeeecCCcccCC--CCeEEEEeec--ChhhHHHHHHHHHHH
Q 024997          219 IIGREGKKFRAE--ARFVRLSLLK--SQDDFDLLLHRLDEL  255 (259)
Q Consensus       219 i~~~~g~~f~~~--~~~~Ris~~~--~~~~~~~~~~~l~~~  255 (259)
                      |.++-+..-..+  ....|++.+.  +.++++.+++.+.+.
T Consensus       459 igvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~  499 (519)
T KOG1357|consen  459 IGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRV  499 (519)
T ss_pred             ceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhh
Confidence            766543322222  5667888865  889999999887664

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.27  E-value=4e-10  Score=100.01  Aligned_cols=210  Identities=13%  Similarity=0.111  Sum_probs=128.1

Q ss_pred             ChhhhcccCC------CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCC
Q 024997           24 EANLWGNASS------DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APAD   82 (259)
Q Consensus        24 d~~~l~~~~~------~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~   82 (259)
                      |.+.+++.+.      ++..++++.....-.|.+.         .++|+++|+++|+||++  |+.....+.    +.. 
T Consensus       214 d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~-  292 (459)
T PRK11522        214 NIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQ-  292 (459)
T ss_pred             CHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCC-
Confidence            4555666552      2345644443343334433         28999999999999998  432211111    111 


Q ss_pred             CeEEEeccccccCCCc-ceEEEEEecCHHHHHHHHH--hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 024997           83 EELMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSA--YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKK  159 (259)
Q Consensus        83 ~~i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~--~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  159 (259)
                      .+  +-+++|.+| .| +.+|.+++. +++.+.+..  .....+++.+++.-+++.+.|+...   .++    ..+++++
T Consensus       293 PD--ivt~gK~lg-gG~~Pigav~~~-~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~---~~~----l~~~~~~  361 (459)
T PRK11522        293 PD--ILCLAKALG-GGVMPIGATIAT-EEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLL---EQN----LPAQAEQ  361 (459)
T ss_pred             CC--EEEechhhh-CCCccceeEEEc-HHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHh---cch----HHHHHHH
Confidence            12  348999998 67 689999999 688887642  2344567788988888888888642   122    3556666


Q ss_pred             HHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCCCeEEEEe
Q 024997          160 RWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEARFVRLSL  238 (259)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~  238 (259)
                      .-+++.+.|+++..    .++.    .+..+... |..+-+.+... ....+...+.++||.+.+.   ..+.+.+|++.
T Consensus       362 ~g~~l~~~L~~l~~----~~~~----~i~~VrG~-Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~---~~~~~~lr~~P  429 (459)
T PRK11522        362 KGDYLLDGFRQLAR----EYPD----LVQEARGK-GMLMAIEFVDNEIGYNFASEMFRQRVLVAGT---LNNAKTIRIEP  429 (459)
T ss_pred             HHHHHHHHHHHHHH----hCCC----ceeeEEec-eeEEEEEecCchHHHHHHHHHHHCCeEEEec---CCCCCEEEEEC
Confidence            66677777765431    1110    01122222 44445555432 1233444455689998752   22357899987


Q ss_pred             ec--ChhhHHHHHHHHHHHhh
Q 024997          239 LK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       239 ~~--~~~~~~~~~~~l~~~l~  257 (259)
                      .-  +++++++++++|.++++
T Consensus       430 pl~~t~~~id~~l~~l~~~l~  450 (459)
T PRK11522        430 PLTLTIEQCEQVLKAARKALA  450 (459)
T ss_pred             CccCCHHHHHHHHHHHHHHHH
Confidence            53  99999999999998775

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.26  E-value=3.9e-10  Score=99.52  Aligned_cols=179  Identities=15%  Similarity=0.111  Sum_probs=110.9

Q ss_pred             HhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeEEEeccccccCCCc-ceEEEEEecCHHHHHHHHH--hhhhhcC
Q 024997           54 AVLKGPYAKSIYDHAY--FWPHFAPIP----APADEELMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSA--YISLNTM  124 (259)
Q Consensus        54 ~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~--~~~~~~~  124 (259)
                      ++|+++|+++|+||++  |+.....+.    +.. .+  +-+++|.+| .| +.+|.+++. +++.+.+..  .....++
T Consensus       252 ~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~-PD--ivt~gK~lg-~G~~Pigavv~~-~~i~~~~~~~~~~~~~T~  326 (442)
T TIGR03372       252 ALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQ-PD--ILCLAKALG-GGVMPIGATIAT-EAVFSVLFDNPFLHTTTF  326 (442)
T ss_pred             HHHHHcCCEEEEeecccCCCccccchhhhhcCCC-CC--eeeehhhhc-CCcccceEEEec-HHHHHhhhccCccccCCC
Confidence            8999999999999998  532211111    111 12  346999998 78 689999998 699888742  2344577


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC
Q 024997          125 GVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER  204 (259)
Q Consensus       125 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (259)
                      +.+++..+++.+.|+...+   ++.    .+..++.-+++.+.|+++..    .++.    .+..+.. .|.++-+.+..
T Consensus       327 ~gnp~~~Aaa~a~L~~i~~---~~l----~~~~~~~G~~l~~~L~~l~~----~~~~----~i~~vRG-~Gl~~giel~~  390 (442)
T TIGR03372       327 GGNPLACAAALATINELLE---KNL----PAQAAIKGDFLLDGFQQLAA----EYPD----LIIEARG-KGLLMAIEFRD  390 (442)
T ss_pred             CCCHHHHHHHHHHHHHHHh---ccH----HHHHHHHHHHHHHHHHHHHH----hCCC----ceEEEec-ceEEEEEEeCC
Confidence            8889988888888886421   222    33444555555555554321    1110    0222232 34555555543


Q ss_pred             C-chHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHHHHHHHHHHh
Q 024997          205 E-EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDLLLHRLDELI  256 (259)
Q Consensus       205 ~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~~~~~l~~~l  256 (259)
                      . ....+...+.++||.+.+.   +.+.+.+||+..  .++++++++++++.+.+
T Consensus       391 ~~~~~~i~~~l~~~Gvl~~~~---~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~~  442 (442)
T TIGR03372       391 NEIGYAFAKELFQQNILVAGT---LNNAKSIRIEPPLTITIEQCALVIKAAKDAL  442 (442)
T ss_pred             hHHHHHHHHHHHHCCcEEeec---CCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence            2 1233444455689998652   223478999875  39999999999998764

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.23  E-value=2.6e-09  Score=95.10  Aligned_cols=211  Identities=12%  Similarity=0.005  Sum_probs=129.4

Q ss_pred             ccChhhhcccCC-CCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc----CCCCCCCCCCCCCeEEEeccc
Q 024997           22 EGEANLWGNASS-DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF----WPHFAPIPAPADEELMIFTIS   91 (259)
Q Consensus        22 ~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~----~~~~~~~~~~~~~~i~~~S~S   91 (259)
                      .+|.++|++.+. .++++|++ ..++ +|...     .++|+++|+++++|+++.    .......+ ....+++++|++
T Consensus       169 ~iD~d~Le~~l~~~~pklIv~-~~S~-~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p-~~~~Div~~t~h  245 (475)
T PLN03226        169 LIDYDKLEKKAMLFRPKLIIA-GASA-YPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASP-FEYCDVVTTTTH  245 (475)
T ss_pred             CcCHHHHHHHHhhcCCeEEEE-ecCc-CCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCC-CCCCeEEEecCc
Confidence            458899999884 46777555 3333 34333     489999999999999982    11111111 124578999999


Q ss_pred             ccc-CCCcceEEEEEecCHHHH-----------HH---HHHhhhh-hcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q 024997           92 KLT-GHAGSRFGWAVIKDEAVY-----------QR---MSAYISL-NTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYN  155 (259)
Q Consensus        92 K~~-g~~G~R~G~i~~~~~~~~-----------~~---~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~  155 (259)
                      |.+ |..|   |++++. ++++           +.   +...... ...++++..-.+...+++...    ..-..+..+
T Consensus       246 K~L~GP~G---g~I~~~-~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~----~~~~~~~~~  317 (475)
T PLN03226        246 KSLRGPRG---GMIFFR-KGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAM----TPEFKAYQK  317 (475)
T ss_pred             ccccCCCc---eEEEEc-hhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHh----CcCHHHHHH
Confidence            998 6666   888887 4544           22   1111111 222333333333444555431    112455688


Q ss_pred             HHHHHHHHHHHHHHhcCCCccccccccccccceeeCC-CCCeeEEEecCC--CchHHHHHHHHHcCeeeecCCccc----
Q 024997          156 TMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP-PSPAYAWVKCER--EEDKDCYGILKAAKIIGREGKKFR----  228 (259)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~ll~~~gi~~~~g~~f~----  228 (259)
                      ++.++.+.+.+.|++.+              +....+ ...-.+++++..  .+...+...|++.||.+..+.-.+    
T Consensus       318 ~~~~na~~L~~~L~~~G--------------~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~  383 (475)
T PLN03226        318 QVKANAAALANRLMSKG--------------YKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSA  383 (475)
T ss_pred             HHHHHHHHHHHHHHhCC--------------CEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCccc
Confidence            89999999999988744              222221 112345566643  256778888999999887643111    


Q ss_pred             CCCCeEEEEe------ecChhhHHHHHHHHHHHhh
Q 024997          229 AEARFVRLSL------LKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       229 ~~~~~~Ris~------~~~~~~~~~~~~~l~~~l~  257 (259)
                      ..+..+|++.      +.++++++++.+.|.++++
T Consensus       384 ~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~  418 (475)
T PLN03226        384 LVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVT  418 (475)
T ss_pred             CCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            1356789854      3377889999988888775

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.23  E-value=7.9e-10  Score=104.64  Aligned_cols=207  Identities=10%  Similarity=-0.010  Sum_probs=130.3

Q ss_pred             CCceEEEEcCCCCCChhhHH----HhhcCC---------CcEEEeeccccCCCCCCCC-CCCCCeEEEeccccccC-CCc
Q 024997           34 DTHLVEFVTAPNNPDGQMNK----AVLKGP---------YAKSIYDHAYFWPHFAPIP-APADEELMIFTISKLTG-HAG   98 (259)
Q Consensus        34 ~~~~~i~i~~p~NPtG~~~~----~la~~~---------~~~vi~De~y~~~~~~~~~-~~~~~~i~~~S~SK~~g-~~G   98 (259)
                      ++++++.++..+|.||.+++    +.+++.         ++++++|.++..++. ++. ...+.+++..|+.|.+| ..|
T Consensus       191 ~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~-piDv~~~~~Dfl~~S~HK~~GgP~G  269 (805)
T PLN02724        191 EAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTS-PPDLSRYPADFVVVSFYKIFGYPTG  269 (805)
T ss_pred             CCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCC-CCChhhcCCCEEEEecceeccCCCC
Confidence            45689999999999999994    223332         368999998842222 221 34567999999999998 667


Q ss_pred             ceEEEEEecCHHHHHHHHHhhhh-----------------------hcCCCCH-HHHHHHHHHHHHHHhcCCcchHHHHH
Q 024997           99 SRFGWAVIKDEAVYQRMSAYISL-----------------------NTMGVSR-ECQLRAFKLLKVVLEDGGNNIFEFGY  154 (259)
Q Consensus        99 ~R~G~i~~~~~~~~~~~~~~~~~-----------------------~~~~~~~-~~q~~~~~~l~~~~~~~~~~~~~~~~  154 (259)
                        +|++++. +++.+.+......                       ...|.+. +...++.++++...    .--+++..
T Consensus       270 --~G~L~vr-~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~----~ig~~~I~  342 (805)
T PLN02724        270 --LGALLVR-RDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLN----RLTISAIA  342 (805)
T ss_pred             --ceEEEEe-hhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHH----HhChHHHH
Confidence              8999998 5877665432110                       1122222 22233444444321    11245667


Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccccccccccceeeC---------CCCCeeEEEecCCC-----chHHHHHHHHHcCee
Q 024997          155 NTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIR---------PPSPAYAWVKCERE-----EDKDCYGILKAAKII  220 (259)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-----~~~~~~~ll~~~gi~  220 (259)
                      ++.++..+++.+.|++++.       .+|...+..+.         ..++. +.+++...     ....+..++.++||.
T Consensus       343 ~~~~~L~~~l~~~L~~l~~-------~~g~~~v~iyg~~~~~~~~~~r~~i-vsFnv~~~~~~~v~~~~v~~l~~~~gI~  414 (805)
T PLN02724        343 MHTWALTHYVANSLRNLKH-------GNGAPVCVLYGNHTFKLEFHIQGPI-VTFNLKRADGSWVGHREVEKLASLSGIQ  414 (805)
T ss_pred             HHHHHHHHHHHHHHHhccC-------CCCCeEEEEcCCCCCCCCcccccCE-EEEEEEcCCCCEeCHHHHHHHHHhcCcE
Confidence            7888888888888887641       00000011111         12333 33333332     345577888889999


Q ss_pred             eecCCcccC----------------------------------CCCeEEEEeec--ChhhHHHHHHHHHHHh
Q 024997          221 GREGKKFRA----------------------------------EARFVRLSLLK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       221 ~~~g~~f~~----------------------------------~~~~~Ris~~~--~~~~~~~~~~~l~~~l  256 (259)
                      +|.|.++.+                                  +.+.+|+|++.  +.++++.+++.|++.+
T Consensus       415 vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~  486 (805)
T PLN02724        415 LRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF  486 (805)
T ss_pred             EeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence            999987752                                  13789999987  8999999999999864

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.23  E-value=6.7e-10  Score=98.32  Aligned_cols=194  Identities=13%  Similarity=0.080  Sum_probs=119.0

Q ss_pred             CceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeEEEeccccccCCCc
Q 024997           35 THLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEELMIFTISKLTGHAG   98 (259)
Q Consensus        35 ~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i~~~S~SK~~g~~G   98 (259)
                      +..+ ++..| ..-.|.+.         .++|+++|+++|+||++  |+.....+.    +..+ ++  -++||.++ .|
T Consensus       221 ~iaa-vi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~p-Di--vt~~K~l~-~G  295 (441)
T PRK05769        221 EVAA-IIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEP-DI--ITLAKAIA-GG  295 (441)
T ss_pred             ceEE-EEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCC-CE--EEEccccc-CC
Confidence            4556 55555 34444443         28999999999999998  432211111    1112 22  36899998 89


Q ss_pred             ceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 024997           99 SRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQE  178 (259)
Q Consensus        99 ~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  178 (259)
                      +++|+++++ +++.+.+ ......+++.+++.++++.+.|+..     ++   ...+++++.-+++.+.|+++..    .
T Consensus       296 ~p~gav~~~-~~i~~~~-~~~~~~T~~g~p~~~aaa~a~L~~l-----~~---~~~~~~~~~g~~l~~~L~~l~~----~  361 (441)
T PRK05769        296 LPLGAVIGR-AELMFLP-PGSHANTFGGNPVAAAAALATLEEL-----EE---GLLENAQKLGEYLRKELKELKE----K  361 (441)
T ss_pred             cccEEEEEe-hhhhhcC-CCCCCCCCCcCHHHHHHHHHHHHHH-----HH---HHHHHHHHHHHHHHHHHHHHHH----h
Confidence            999999999 6887543 2233445677899999998888853     11   3456666667777777765431    0


Q ss_pred             ccccccccceeeCCCCCeeEEEecCCC----c---hHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHH
Q 024997          179 IAPQYCTYFKKIRPPSPAYAWVKCERE----E---DKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLL  249 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~  249 (259)
                      ++     .+..+... |...-+.+...    +   ...+...+.++||.+.+     .+.+.+|++...  +++++++++
T Consensus       362 ~~-----~~~~vrg~-G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~-----~~~~~lr~~p~l~~t~~~id~~~  430 (441)
T PRK05769        362 YE-----FIGDVRGL-GLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLG-----AGKSAIRIIPPLIITEEEADIGL  430 (441)
T ss_pred             CC-----Ceeeeecc-eEEEEEEeccCCccccHHHHHHHHHHHHhCCcEEec-----CCCCEEEEeCCCCCCHHHHHHHH
Confidence            00     01112222 33333333211    1   12233344468999875     234678999755  999999999


Q ss_pred             HHHHHHhhh
Q 024997          250 HRLDELISK  258 (259)
Q Consensus       250 ~~l~~~l~~  258 (259)
                      +++.+.+.+
T Consensus       431 ~~l~~~l~~  439 (441)
T PRK05769        431 EILEEAIKE  439 (441)
T ss_pred             HHHHHHHHH
Confidence            999998763

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.22  E-value=1.4e-11  Score=103.53  Aligned_cols=101  Identities=12%  Similarity=-0.038  Sum_probs=72.1

Q ss_pred             CCcccchhhhhhccCccc--------c----cccChhhhcccCC--CCceEEEEcCCCCCChhhH-----HHhhcCCCcE
Q 024997            2 PFYPLYQEQTDYFESVDY--------K----FEGEANLWGNASS--DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAK   62 (259)
Q Consensus         2 P~y~~~~~~~~~~g~~~~--------~----~~~d~~~l~~~~~--~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~   62 (259)
                      |+|+.....+...|..+.        .    ..+|++.+++.++  ++++++++++| ||+|.++     .++|+++|++
T Consensus       107 ~~h~s~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~  185 (294)
T cd00615         107 NCHKSVINGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLP  185 (294)
T ss_pred             CchHHHHHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCe
Confidence            566666666666676541        1    2578899999884  57899999999 7999988     3899999999


Q ss_pred             EEeecccc-----CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEE
Q 024997           63 SIYDHAYF-----WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAV  105 (259)
Q Consensus        63 vi~De~y~-----~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~  105 (259)
                      +|+||+|.     .+.........+.++++.|++|.+  +|++.|+++
T Consensus       186 livDeA~~~~~~~~~~~~~~~~~~~~div~~S~hK~l--~g~~~~~~l  231 (294)
T cd00615         186 VLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTHKTL--PALTQGSMI  231 (294)
T ss_pred             EEEECcchhhhccCcccCcchhhcCCcEEEEchhccc--chHhHHHHH
Confidence            99999982     121111112346799999999986  577765543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.21  E-value=2.2e-09  Score=93.43  Aligned_cols=203  Identities=11%  Similarity=0.009  Sum_probs=126.6

Q ss_pred             ceEEEEcCCCCCChhhHH--Hhh-cCCCcEEEeeccc-cCCCCCCCCCCCCCeEEEeccccccC-CCcceEEEEEecCHH
Q 024997           36 HLVEFVTAPNNPDGQMNK--AVL-KGPYAKSIYDHAY-FWPHFAPIPAPADEELMIFTISKLTG-HAGSRFGWAVIKDEA  110 (259)
Q Consensus        36 ~~~i~i~~p~NPtG~~~~--~la-~~~~~~vi~De~y-~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~i~~~~~~  110 (259)
                      ++++.+++.+|.||..++  +++ +++|+++|+|.+. ++.....+   .+-++++.|..|.++ .+|  +|+++.. ++
T Consensus       137 ~~~V~~~h~~t~tG~~~pi~~I~~~~~g~~~vVDa~qs~G~~pidv---~~iD~~~~s~~K~l~~P~G--~g~l~v~-~~  210 (378)
T PRK03080        137 DRDVVFTWNGTTTGVRVPVARWIGADREGLTICDATSAAFALPLDW---SKLDVYTFSWQKVLGGEGG--HGMAILS-PR  210 (378)
T ss_pred             CCCEEEEecCCccceeccchhhccccCCCeEEEecccccccCCCCH---HHCcEEEEehhhhCCCCCc--eEEEEEC-HH
Confidence            456789999999999994  554 4679999999977 22111122   224799999999885 478  9999999 68


Q ss_pred             HHHHHHHhh----------------------hhhcCCCCHH-HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHH
Q 024997          111 VYQRMSAYI----------------------SLNTMGVSRE-CQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKI  167 (259)
Q Consensus       111 ~~~~~~~~~----------------------~~~~~~~~~~-~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
                      .++++....                      ...+.+.+++ .-.++.++++...+   ..-++...++.+++.+.+++.
T Consensus       211 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~---~gG~e~i~~r~~~l~~~l~~~  287 (378)
T PRK03080        211 AVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANS---IGGLDALIARTAANASVLYDW  287 (378)
T ss_pred             HHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHH
Confidence            887765321                      0111222222 22222444443321   112466678888888889988


Q ss_pred             HHhcCCCccccccccccccceeeCCCCCeeEEEecCC----CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--C
Q 024997          168 ISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER----EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--S  241 (259)
Q Consensus       168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~  241 (259)
                      |++++++.+....+         ...++..+.+.+++    .+.+....++ ++|+.++.|.+.. ..+.+|+|+..  +
T Consensus       288 l~~~~~~~~~~~~~---------~~~s~~i~~~~~~~~~~~~~~~~~~~l~-~~~i~v~~g~~~~-~~~~vRis~~~~~t  356 (378)
T PRK03080        288 AEKTPWATPLVADP---------ATRSNTSVTLDFVDAQAAVDAAAVAKLL-RENGAVDIEPYRD-APNGLRIWCGPTVE  356 (378)
T ss_pred             HHhCCCcccccCCc---------cccCccEEEEEcCCchHHHHHHHHHHHH-HcCCeeccccccC-CCCcEEEecCCCCC
Confidence            88876432211000         11223344455554    2344555555 5588888765322 34789999865  8


Q ss_pred             hhhHHHHHHHHHHHhhh
Q 024997          242 QDDFDLLLHRLDELISK  258 (259)
Q Consensus       242 ~~~~~~~~~~l~~~l~~  258 (259)
                      .++++.+++.|++++++
T Consensus       357 ~~di~~l~~al~~~~~~  373 (378)
T PRK03080        357 PADVEALTPWLDWAFER  373 (378)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999987763

>PRK07678 aminotransferase; Validated

Probab=99.20  E-value=1.9e-09  Score=95.64  Aligned_cols=201  Identities=16%  Similarity=0.145  Sum_probs=120.1

Q ss_pred             CCceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCC--CC--CC-CCCCeEEEeccccccCC
Q 024997           34 DTHLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFA--PI--PA-PADEELMIFTISKLTGH   96 (259)
Q Consensus        34 ~~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~--~~--~~-~~~~~i~~~S~SK~~g~   96 (259)
                      ++..+ ||..| +.-.|.+.         .++|+++|+++|.||++  |+....  ..  .+ .+|    +-+++|.+| 
T Consensus       212 ~~iAA-vi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PD----ivt~gK~lg-  285 (451)
T PRK07678        212 ETIAA-VIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPD----IITMAKGIT-  285 (451)
T ss_pred             CceEE-EEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCC----EEEeecccc-
Confidence            35666 45555 33334443         28999999999999998  532111  11  11 222    458899998 


Q ss_pred             Cc-ceEEEEEecCHHHHHHHHH------hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHH
Q 024997           97 AG-SRFGWAVIKDEAVYQRMSA------YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIIS  169 (259)
Q Consensus        97 ~G-~R~G~i~~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  169 (259)
                      .| +.+|.+++. +++.+.+..      .....+++.+++..+++.+.|+...+   ++.    .++.++.-+++.+.|+
T Consensus       286 gG~~Pi~av~~~-~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~---~~~----~~~~~~~g~~l~~~l~  357 (451)
T PRK07678        286 SAYLPLSATAVK-KEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMEN---ENL----IERSAQLGELLLEQLK  357 (451)
T ss_pred             cCCcceeEEEEc-HHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHh---CCH----HHHHHHHHHHHHHHHH
Confidence            67 799999999 699988763      12456788899999999888886522   222    3444555455555554


Q ss_pred             hcCCCccccccccccccceeeCCCCCeeEEEecCC-------Cc---hHHHHHHHHHcCeeeecCCccc-CCCCeEEEEe
Q 024997          170 LSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-------EE---DKDCYGILKAAKIIGREGKKFR-AEARFVRLSL  238 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~ll~~~gi~~~~g~~f~-~~~~~~Ris~  238 (259)
                      ++..    ..     ..+..+...|.+ .-+.+..       .+   ...+...+.++||.+.+..... ...+.+|++.
T Consensus       358 ~~~~----~~-----~~v~~vrg~Gl~-~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~P  427 (451)
T PRK07678        358 EELG----EH-----PLVGDIRGKGLL-VGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSP  427 (451)
T ss_pred             HHHh----cC-----CCEEEEEeeceE-EEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEEC
Confidence            3210    00     002223333332 2333311       01   2234444557899987632111 2247899996


Q ss_pred             ec--ChhhHHHHHHHHHHHhhh
Q 024997          239 LK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       239 ~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      ..  ++++++++++++.+.+.+
T Consensus       428 pl~it~~eid~~~~~l~~~l~~  449 (451)
T PRK07678        428 PLVISSEEIAFIVGTLKTALER  449 (451)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHh
Confidence            54  999999999999998753

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.19  E-value=9.9e-10  Score=95.55  Aligned_cols=200  Identities=14%  Similarity=0.072  Sum_probs=125.7

Q ss_pred             CceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCC--CCCCCCCCCCeEEEeccccccCCCcceE
Q 024997           35 THLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPH--FAPIPAPADEELMIFTISKLTGHAGSRF  101 (259)
Q Consensus        35 ~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~--~~~~~~~~~~~i~~~S~SK~~g~~G~R~  101 (259)
                      ++.++++..-+.-.|.+.         .++|+++|+++|+||++  |+..  +..+ ...+-.--+-|+||.+| .|+.+
T Consensus       222 ~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~-E~~gv~PDivt~aK~ig-~G~Pl  299 (447)
T COG0160         222 EVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAF-EHFGVEPDIVTLAKSLG-GGLPL  299 (447)
T ss_pred             ceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhh-hhcCCCCCEEEeccccc-CCCce
Confidence            566755555565555554         28999999999999999  5322  2222 11121223678999998 59999


Q ss_pred             EEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Q 024997          102 GWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAP  181 (259)
Q Consensus       102 G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  181 (259)
                      |.++.. +++.+ ...-....+++.+++..+++.+.|+...   .++.    .++..+.=+++.+.|.++..    ..+.
T Consensus       300 ~avv~r-~ei~~-~~~g~~~~Tf~GNpva~Aaa~AvL~vie---~e~L----~~~a~~~G~~l~~~L~~l~~----~~~~  366 (447)
T COG0160         300 SAVVGR-AEIMD-WPPGGHGGTFGGNPVACAAALAVLDVIE---EENL----LERAAELGEYLRDRLEELQE----KHPL  366 (447)
T ss_pred             eEEecc-HHhcc-cCCcccCCCCCcCHHHHHHHHHHHHHHH---HccH----HHHHHHHHHHHHHHHHHHHh----hcCc
Confidence            999999 79988 5555555679999999999999998642   2233    33444444444444444331    1110


Q ss_pred             cccccceeeCCCCCeeEEEecCC------Cc---hHHHHHHHHHcCeeeecCCcccCCCCeEEEEe--ecChhhHHHHHH
Q 024997          182 QYCTYFKKIRPPSPAYAWVKCER------EE---DKDCYGILKAAKIIGREGKKFRAEARFVRLSL--LKSQDDFDLLLH  250 (259)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~--~~~~~~~~~~~~  250 (259)
                           +..++.. |.++-+.+-.      .+   .+.+...+.++|+.+..   ++...+.+||..  ..++++++.+++
T Consensus       367 -----IgdVRG~-Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~---~G~~~nviRi~PPL~is~e~~d~~l~  437 (447)
T COG0160         367 -----IGDVRGL-GLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLT---CGPHGNVLRILPPLTISDEELDEGLD  437 (447)
T ss_pred             -----eeccccc-ceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEec---cCCCCcEEEEeCCcccCHHHHHHHHH
Confidence                 2222222 3344444321      22   23444445578997766   343358999996  339999999999


Q ss_pred             HHHHHhhh
Q 024997          251 RLDELISK  258 (259)
Q Consensus       251 ~l~~~l~~  258 (259)
                      .|.+.+.+
T Consensus       438 il~~al~~  445 (447)
T COG0160         438 ILEEALKE  445 (447)
T ss_pred             HHHHHHHh
Confidence            99998864

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.19  E-value=9.6e-10  Score=96.80  Aligned_cols=206  Identities=11%  Similarity=0.030  Sum_probs=127.1

Q ss_pred             ChhhhcccCC---CCceEEEEcCC--CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCC
Q 024997           24 EANLWGNASS---DTHLVEFVTAP--NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADE   83 (259)
Q Consensus        24 d~~~l~~~~~---~~~~~i~i~~p--~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~   83 (259)
                      |.+.+++.+.   ++..+ ++..|  +.-.|...         .++|+++|+++|+||++  |+.....+.    +.. .
T Consensus       190 d~~~l~~~l~~~~~~iaa-vi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~-P  267 (428)
T PRK07986        190 DIAPFARLMAAHRHEIAA-VILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIA-P  267 (428)
T ss_pred             HHHHHHHHHHhCCCcEEE-EEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCC-C
Confidence            3455666662   34555 44544  33233322         38999999999999998  432221111    111 1


Q ss_pred             eEEEeccccccCCCc-ceEEEEEecCHHHHHHHHHh-----hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 024997           84 ELMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAY-----ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTM  157 (259)
Q Consensus        84 ~i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  157 (259)
                      +++  +++|.++ .| +.+|.++++ +++.+.+...     ....+++.+++.-+++.+.|+...+   ++    ..+++
T Consensus       268 Di~--t~gK~l~-gG~~p~~av~~~-~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~---~~----~~~~~  336 (428)
T PRK07986        268 DIL--CLGKALT-GGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLES---GD----WQQQV  336 (428)
T ss_pred             CEE--Eechhhh-CCcccCcchhch-HHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHh---CC----HHHHH
Confidence            333  6999997 67 588888988 6999988652     2345667788888888888875421   12    35566


Q ss_pred             HHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCCCeEEE
Q 024997          158 KKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEARFVRL  236 (259)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ri  236 (259)
                      +++-+++.+.|+.+...     +     .+..+... |...-+.+... ....+...+.++|+.+.+.     + +.+|+
T Consensus       337 ~~~g~~l~~~l~~l~~~-----~-----~i~~vRg~-Gl~~~ve~~~~~~~~~~~~~l~~~Gl~~~~~-----g-~~i~~  399 (428)
T PRK07986        337 AAIEAQLREELAPLRDA-----P-----MVADVRVL-GAIGVVETTRPVNMAALQRFFVEQGVWIRPF-----G-KLIYL  399 (428)
T ss_pred             HHHHHHHHHHHHHHhcC-----C-----CEEeEecc-ceEEEEEeCCcccHHHHHHHHHHCCcEEEec-----C-CEEEE
Confidence            66666666666654311     0     02222333 33333444322 2344555566789999762     2 58999


Q ss_pred             Eee--cChhhHHHHHHHHHHHhhhC
Q 024997          237 SLL--KSQDDFDLLLHRLDELISKE  259 (259)
Q Consensus       237 s~~--~~~~~~~~~~~~l~~~l~~~  259 (259)
                      +..  .+++++++++++|.+.+++|
T Consensus       400 ~Ppl~it~~ei~~~~~~l~~~l~~~  424 (428)
T PRK07986        400 MPPYIILPEQLQRLTAAVNRAVQDE  424 (428)
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHhhc
Confidence            753  49999999999999998875

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.18  E-value=2.7e-09  Score=94.16  Aligned_cols=205  Identities=14%  Similarity=0.048  Sum_probs=125.6

Q ss_pred             hhhhcccCC---CCceEEEEcCC--CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCe
Q 024997           25 ANLWGNASS---DTHLVEFVTAP--NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEE   84 (259)
Q Consensus        25 ~~~l~~~~~---~~~~~i~i~~p--~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~   84 (259)
                      .+++++.+.   ++..+ |+..|  ++-.|...         .++|+++|+++|+||++  |+.....+.    +..+ +
T Consensus       194 ~~~l~~~l~~~~~~vaa-vivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~p-D  271 (427)
T TIGR00508       194 ITPLAKLMELHSDEIAA-VILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVP-D  271 (427)
T ss_pred             HHHHHHHHHhcCCcEEE-EEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCC-C
Confidence            445555552   34555 55555  33333222         38999999999999998  322221111    2212 2


Q ss_pred             EEEeccccccCCCcc-eEEEEEecCHHHHHHHHHhh-----hhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 024997           85 LMIFTISKLTGHAGS-RFGWAVIKDEAVYQRMSAYI-----SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMK  158 (259)
Q Consensus        85 i~~~S~SK~~g~~G~-R~G~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  158 (259)
                      |+  +++|.++ .|+ -++.++.. +++.+.+....     ...+++.+++..+++.+.++...   .++    ..++++
T Consensus       272 i~--~~gK~l~-gG~~p~~a~~~~-~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~---~~~----~~~~~~  340 (427)
T TIGR00508       272 IL--CVGKALT-GGYMTLSATVTT-DKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILL---EGE----WQKQVS  340 (427)
T ss_pred             EE--Eechhhh-cCcccceEEEEc-HHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHH---hCC----HHHHHH
Confidence            33  4899996 675 67888888 69988886421     23355678888888888887542   122    356777


Q ss_pred             HHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCCCeEEEE
Q 024997          159 KRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEARFVRLS  237 (259)
Q Consensus       159 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris  237 (259)
                      ++-+++.+.|+++....          .+...... |...-+.+... ....+...+.++||.+.+.     + +.+|++
T Consensus       341 ~~~~~l~~~L~~l~~~~----------~i~~vrg~-G~~~~i~~~~~~~~~~~~~~l~~~Gv~~~~~-----~-~~l~~~  403 (427)
T TIGR00508       341 AIENQLKRELSPLRKNP----------VVKDVRVL-GAIGVVEMYKPVNVEELQKKFVEQGVWIRPF-----G-KLIYVM  403 (427)
T ss_pred             HHHHHHHHHHHHhhcCC----------CEEeEecc-ccEEEEEECCccCHHHHHHHHHHCCeEEEec-----C-CEEEEE
Confidence            77777777777654210          01112222 33333444321 2344455555789998762     1 478998


Q ss_pred             ee--cChhhHHHHHHHHHHHhhhC
Q 024997          238 LL--KSQDDFDLLLHRLDELISKE  259 (259)
Q Consensus       238 ~~--~~~~~~~~~~~~l~~~l~~~  259 (259)
                      ..  .++++++++++++.+.+++|
T Consensus       404 ppl~~t~~~id~~~~~l~~~l~~~  427 (427)
T TIGR00508       404 PPYIITTEQLQKLTAALIEALHEE  427 (427)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhcC
Confidence            75  59999999999999999876

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.17  E-value=2.3e-09  Score=96.15  Aligned_cols=196  Identities=15%  Similarity=0.063  Sum_probs=120.8

Q ss_pred             CceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEeccccccCCCc-ce
Q 024997           35 THLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFTISKLTGHAG-SR  100 (259)
Q Consensus        35 ~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G-~R  100 (259)
                      +..+ ||..| ..-.|.+.         .++|+++|+++|+||++  |+.-...+. +..+..--+.+++|.+| .| +.
T Consensus       260 ~iAA-vI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~lg-gG~~P  337 (504)
T PLN02760        260 TIAA-FIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALS-SAYMP  337 (504)
T ss_pred             ceEE-EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEEeccccc-CCccc
Confidence            4555 55555 33334443         28999999999999998  532111111 11111122788999997 56 58


Q ss_pred             EEEEEecCHHHHHHHHHh-------hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCC
Q 024997          101 FGWAVIKDEAVYQRMSAY-------ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNR  173 (259)
Q Consensus       101 ~G~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  173 (259)
                      +|.+++. +++.+.+...       ....+++.+++..+++.+.|+...+   ++    ..+++++.-+.+.+.|+.+..
T Consensus       338 igAv~~~-~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~---~~----l~~~~~~~g~~l~~~L~~l~~  409 (504)
T PLN02760        338 IGAVLVS-PEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKE---RN----IPEHVNKIAPRFQDGIKAFSG  409 (504)
T ss_pred             cceEeec-HHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHh---CC----HHHHHHHHHHHHHHHHHHHhc
Confidence            9999999 7999987642       2445778899999999888886522   12    355666666666666665421


Q ss_pred             CccccccccccccceeeCCCCCeeEEEecCCC---------c---hHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--
Q 024997          174 FSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---------E---DKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--  239 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--  239 (259)
                      ..          .+..+...| ..+-+.+...         +   ...+...+.++||.+.+.      .+.+|++..  
T Consensus       410 ~~----------~v~~vrG~G-l~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~------g~~lrl~Ppl~  472 (504)
T PLN02760        410 SP----------IIGEIRGTG-LILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVA------GDNIMMSPPLI  472 (504)
T ss_pred             CC----------CeeeEEeCc-eEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEec------CCEEEEECCCC
Confidence            10          122233333 3333333211         0   123444455789998762      256899954  


Q ss_pred             cChhhHHHHHHHHHHHhh
Q 024997          240 KSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       240 ~~~~~~~~~~~~l~~~l~  257 (259)
                      .++++++++++++.+.++
T Consensus       473 it~eeid~~~~~l~~al~  490 (504)
T PLN02760        473 ITPEEVDELISIYGKALK  490 (504)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            699999999999988875

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.16  E-value=1.3e-09  Score=96.00  Aligned_cols=207  Identities=12%  Similarity=0.066  Sum_probs=118.8

Q ss_pred             ChhhhcccCC---CCceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cC-CCCCCCC--CCCCCeE
Q 024997           24 EANLWGNASS---DTHLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FW-PHFAPIP--APADEEL   85 (259)
Q Consensus        24 d~~~l~~~~~---~~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~-~~~~~~~--~~~~~~i   85 (259)
                      |.+.|++.+.   ++..+ ++..| ..-.|.+.         .++|+++|+++|+||++  |. .......  +. ..++
T Consensus       187 d~~~l~~~l~~~~~~~aa-vI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~~ga~~~~gv-~PDi  264 (433)
T PRK00615        187 DFQIFQTVMNSLGHRVAG-VIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQGGAAAIYHV-KPDI  264 (433)
T ss_pred             CHHHHHHHHHhcCCceEE-EEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccccHhHHHHhcCC-CCCe
Confidence            5667777662   34556 45555 33344433         38999999999999998  31 0000000  11 1223


Q ss_pred             EEeccccccCCCcceEEEEEecCHHHHHHHHHhh---hhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 024997           86 MIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI---SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWE  162 (259)
Q Consensus        86 ~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (259)
                        -+++|.+| .|+.+|+++++ +++.+.+....   ...+++.+++..+++.+.|+...   .++.    +++++++-+
T Consensus       265 --~~~gK~lg-gG~p~~av~~~-~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~---~~~~----~~~~~~~g~  333 (433)
T PRK00615        265 --TVYGKILG-GGLPAAAVVAH-KSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCR---EQGF----YTQLSTLEQ  333 (433)
T ss_pred             --EEEccccc-CCcceeeeeec-HHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHh---cccH----HHHHHHHHH
Confidence              36899997 67889999999 79999885322   23466778888888888887642   1222    444444444


Q ss_pred             HHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-----------c---hHHHHHHHHHcCeeeecCCccc
Q 024997          163 NLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-----------E---DKDCYGILKAAKIIGREGKKFR  228 (259)
Q Consensus       163 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~ll~~~gi~~~~g~~f~  228 (259)
                      ++.+.|+++..       ..+.+ +....  .|....+.+...           +   ...+...+.++||.+.|..   
T Consensus       334 ~l~~~l~~~~~-------~~g~~-v~~~r--~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---  400 (433)
T PRK00615        334 NFLSPIEEMIR-------SQGFP-VSLVR--YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSP---  400 (433)
T ss_pred             HHHHHHHHHHH-------HcCCC-eEEEe--eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCcc---
Confidence            44444443210       00000 11122  233333333211           1   1234444556899987732   


Q ss_pred             CCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          229 AEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       229 ~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      .+ .+ =+|.+++++++++.++.+.+++++
T Consensus       401 ~~-~~-~ls~~ht~~did~~~~a~~~~~~~  428 (433)
T PRK00615        401 FE-AS-FLSSAHSMENLDYAQNVLIDSLEK  428 (433)
T ss_pred             cc-cc-ceecCCCHHHHHHHHHHHHHHHHH
Confidence            11 11 256667999999999999998875

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.15  E-value=2.6e-09  Score=94.38  Aligned_cols=207  Identities=14%  Similarity=0.122  Sum_probs=124.0

Q ss_pred             ChhhhcccCC---CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCC-CC--CC-CCCCeE
Q 024997           24 EANLWGNASS---DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFA-PI--PA-PADEEL   85 (259)
Q Consensus        24 d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~-~~--~~-~~~~~i   85 (259)
                      |.+.+++.+.   ++..++++.....-.|.+.         .++|+++|+++|.||++  |..... ..  .+ .+|   
T Consensus       186 d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv~PD---  262 (428)
T PRK12389        186 DIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGVEPD---  262 (428)
T ss_pred             CHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHhCCCCC---
Confidence            5677777663   3455644444344445443         38999999999999998  411100 00  01 122   


Q ss_pred             EEeccccccCCCcceEEEEEecCHHHHHHHHH---hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 024997           86 MIFTISKLTGHAGSRFGWAVIKDEAVYQRMSA---YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWE  162 (259)
Q Consensus        86 ~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (259)
                       +-+++|.+| .|+.+|.+++. +++.+.+..   .....+++.+++.-+++.+.|+.+.   .++    ..+++++.-+
T Consensus       263 -ivt~gK~lg-gG~Pi~av~~~-~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~---~~~----l~~~~~~~g~  332 (428)
T PRK12389        263 -LTALGKIIG-GGLPIGAYGGR-KDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQ---QEG----VYEKLDRLGA  332 (428)
T ss_pred             -eeeechhhc-CCCceeEEeEH-HHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHh---ccc----HHHHHHHHHH
Confidence             458999997 78999999998 799988753   2234567889999888888888642   122    3445556666


Q ss_pred             HHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecC--CC---------c---hHHHHHHHHHcCeeeecCCccc
Q 024997          163 NLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCE--RE---------E---DKDCYGILKAAKIIGREGKKFR  228 (259)
Q Consensus       163 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------~---~~~~~~ll~~~gi~~~~g~~f~  228 (259)
                      ++.+.|+++..    ..+   . ........ |++ -+.+.  ..         +   ...+...+.++||.+.+..   
T Consensus       333 ~l~~~L~~l~~----~~~---~-~~~v~r~~-g~~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---  399 (428)
T PRK12389        333 MLEEGILEAAE----KHG---I-TITINRLK-GAL-TVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSK---  399 (428)
T ss_pred             HHHHHHHHHHH----hCC---C-CEEEEecC-cEE-EEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCC---
Confidence            66666654320    000   0 01111222 222 12111  00         1   2344455557899998731   


Q ss_pred             CCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          229 AEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       229 ~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                        .+.+.+++..++++++++++++.+.+++
T Consensus       400 --~~~~~~~l~~t~e~id~~~~~l~~~l~~  427 (428)
T PRK12389        400 --YEAWFLTTAHTEEDIEETLEAVDRAFAQ  427 (428)
T ss_pred             --CCCeeecCCCCHHHHHHHHHHHHHHHHh
Confidence              1235677767999999999999998864

>PRK07046 aminotransferase; Validated

Probab=99.13  E-value=3.9e-09  Score=93.63  Aligned_cols=209  Identities=10%  Similarity=-0.021  Sum_probs=121.1

Q ss_pred             ChhhhcccCC-CCceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc-cCCCCCCCCCCCCCeEEEeccc
Q 024997           24 EANLWGNASS-DTHLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY-FWPHFAPIPAPADEELMIFTIS   91 (259)
Q Consensus        24 d~~~l~~~~~-~~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y-~~~~~~~~~~~~~~~i~~~S~S   91 (259)
                      |++.+++.+. ++..+ +|..| ..-.|.+.         .++|+++|+++|.||+. |.-.........+-.--+-+++
T Consensus       206 d~~~l~~~l~~~~vAa-vi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~~~~gv~PDi~t~g  284 (453)
T PRK07046        206 DLAALEAALADGDVAA-VLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYTRAHGLEPDFLVVG  284 (453)
T ss_pred             CHHHHHHHhCCCCeEE-EEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchhHHhCCCccceeeh
Confidence            6777888774 35566 55555 33234333         28999999999999997 3111111111011111144789


Q ss_pred             cccCCCcceEEEEEecCHHHHHHHHHh---------hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 024997           92 KLTGHAGSRFGWAVIKDEAVYQRMSAY---------ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWE  162 (259)
Q Consensus        92 K~~g~~G~R~G~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (259)
                      |.+| .|+.+|.+++. +++.+.+...         ....+++.+++..+++.+.|+.+.   .++.    .+++++.-+
T Consensus       285 K~lg-gG~Pi~av~g~-~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~---~~~~----~~~~~~~g~  355 (453)
T PRK07046        285 KPIA-GGVPCAVYGFS-AELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVM---TEAA----YAHMLALAA  355 (453)
T ss_pred             hhhc-CCCcceeeeeh-HHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHh---cccH----HHHHHHHHH
Confidence            9998 78999999999 7999887642         123467788999888888888652   2233    344444444


Q ss_pred             HHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEec-CC-C----------ch---HHHHHHHHHcCeeeecCCcc
Q 024997          163 NLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKC-ER-E----------ED---KDCYGILKAAKIIGREGKKF  227 (259)
Q Consensus       163 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~----------~~---~~~~~ll~~~gi~~~~g~~f  227 (259)
                      .+.+.|+++..       ..+.  ...+...+.++ .+.+ ++ .          +.   ..+...+.++||.+.|.   
T Consensus       356 ~l~~~L~~l~~-------~~~~--~~~v~g~G~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~---  422 (453)
T PRK07046        356 RLAAGLRAVIA-------RHGL--PWHVTRVGARV-EFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPF---  422 (453)
T ss_pred             HHHHHHHHHHH-------hCCC--CeEEEEeCcEE-EEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEecc---
Confidence            44444443210       0000  11112222222 1211 10 0          11   12223334589998761   


Q ss_pred             cCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          228 RAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       228 ~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                         .+.++++...++++++++++++.+.+.+
T Consensus       423 ---~~~~~~~p~~t~~did~~~~~~~~~l~~  450 (453)
T PRK07046        423 ---HNMMLVCPATTAADVDRLVAAFDACLGE  450 (453)
T ss_pred             ---cCcEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence               1457888877999999999999988753

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.12  E-value=4.4e-09  Score=92.58  Aligned_cols=202  Identities=13%  Similarity=0.048  Sum_probs=124.5

Q ss_pred             hhcccCCCCceEEEEcCC--CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeEEEec
Q 024997           27 LWGNASSDTHLVEFVTAP--NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEELMIFT   89 (259)
Q Consensus        27 ~l~~~~~~~~~~i~i~~p--~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i~~~S   89 (259)
                      .+++.+.++..+++ ..|  +.-.|...         .++|+++|+++|+||++  |+.....+.    +.. .+  +-+
T Consensus       192 ~~~~~~~~~iAAvi-~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~-PD--i~t  267 (422)
T PRK05630        192 SLELLIDETVAAII-IEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVT-PD--IMC  267 (422)
T ss_pred             HHHHHHhhceEEEE-EechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCC-CC--eee
Confidence            34444455677744 445  44445443         28999999999999998  432221111    111 12  238


Q ss_pred             cccccCCCc-ceEEEEEecCHHHHHHHHHh------hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 024997           90 ISKLTGHAG-SRFGWAVIKDEAVYQRMSAY------ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWE  162 (259)
Q Consensus        90 ~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (259)
                      ++|.++ .| ..+|+++++ +++.+.+...      ....+++.+++.-+++.+.++...+   ++.    +++++++-.
T Consensus       268 ~gK~l~-gG~~p~~av~~~-~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~---~~~----~~~~~~~g~  338 (422)
T PRK05630        268 VGKALT-GGFMSFAATLCT-DKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIET---GMW----RKQVKRIEA  338 (422)
T ss_pred             eechhh-cCccccceeecc-HHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHh---CcH----HHHHHHHHH
Confidence            899985 56 478999999 6998887532      2345677888888888888876421   122    345555555


Q ss_pred             HHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--
Q 024997          163 NLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--  239 (259)
Q Consensus       163 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--  239 (259)
                      ++.+.|+.+..     .+     .+..+... |...-+.+... +...+...+.++|+.+.+.     + +.+|+...  
T Consensus       339 ~l~~~L~~l~~-----~~-----~v~~vRg~-Gl~~~ie~~~~~~~~~~~~~~~~~Gl~~~~~-----g-~~l~~~PpL~  401 (422)
T PRK05630        339 ELIAGLSPLAH-----LP-----GVADVRVL-GAIGVVEMEQPVDMEEATQAAVDHGVWLRPF-----G-RLVYVMPPYI  401 (422)
T ss_pred             HHHHHHHHhhc-----CC-----Ceeeeecc-ccEEEEEECCcccHHHHHHHHHHCCeEEEec-----C-CEEEEECCcc
Confidence            56665554321     00     02222322 44445555432 2344555566789998762     2 68899874  


Q ss_pred             cChhhHHHHHHHHHHHhhh
Q 024997          240 KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       240 ~~~~~~~~~~~~l~~~l~~  258 (259)
                      .+++++++++++|.+.++.
T Consensus       402 it~~~i~~~~~~l~~al~~  420 (422)
T PRK05630        402 TTSEQIAQICAALAAAVKA  420 (422)
T ss_pred             CCHHHHHHHHHHHHHHHhc
Confidence            3999999999999998864

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.12  E-value=2.9e-09  Score=94.28  Aligned_cols=203  Identities=12%  Similarity=0.068  Sum_probs=120.8

Q ss_pred             hhhcccCC----CCceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeE
Q 024997           26 NLWGNASS----DTHLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEEL   85 (259)
Q Consensus        26 ~~l~~~~~----~~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i   85 (259)
                      +.|++.+.    ++..+ ++..| ..-.|.+.         .++|+++|+++|+||++  |+.....+.    +.. .+ 
T Consensus       202 ~~le~~l~~~~~~~~aa-vivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~-PD-  278 (442)
T PRK13360        202 DELERLVTLHDASTIAA-VIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVT-PD-  278 (442)
T ss_pred             HHHHHHHHhcCCCcEEE-EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCC-Cc-
Confidence            35666552    34555 45555 44444443         28999999999999998  532111111    111 12 


Q ss_pred             EEeccccccCCCc-ceEEEEEecCHHHHHHHHHh-------hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 024997           86 MIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAY-------ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTM  157 (259)
Q Consensus        86 ~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  157 (259)
                       +-+++|.++ .| +.+|.++++ +++.+.+...       ....+++.+++.-+++.+.|+...+   ++    ..++.
T Consensus       279 -ivt~gK~l~-gG~~P~gav~~~-~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~---~~----l~~~~  348 (442)
T PRK13360        279 -LLTCAKGLT-NGAIPMGAVFVS-SEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYER---EG----LLTRA  348 (442)
T ss_pred             -eeeeeeccc-cCccceEEEEEc-HHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHh---CC----HHHHH
Confidence             448999997 56 789999998 6998877531       2335677788888888888875421   12    34556


Q ss_pred             HHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC---C---chHHHHHHHHHcCeeeecCCcccCCC
Q 024997          158 KKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER---E---EDKDCYGILKAAKIIGREGKKFRAEA  231 (259)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~ll~~~gi~~~~g~~f~~~~  231 (259)
                      ++.-+++.+.|+++.....          +..+...| ...-+.+..   .   ....+...+.++||.+.+.      .
T Consensus       349 ~~~g~~l~~~l~~l~~~~~----------v~~vrG~G-l~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~------~  411 (442)
T PRK13360        349 ARLAPYWEDALHSLRDAPH----------VIDIRNLG-LVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYT------G  411 (442)
T ss_pred             HHHHHHHHHHHHHhhcCCC----------eeeeeccc-eEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEec------C
Confidence            6666666666665432100          11122222 222222211   1   1122333445689998762      2


Q ss_pred             CeEEEEe--ecChhhHHHHHHHHHHHhhh
Q 024997          232 RFVRLSL--LKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       232 ~~~Ris~--~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +.+||+.  ..+++++++++++|.+.+++
T Consensus       412 ~~lr~~Ppl~~t~~eid~~~~~l~~~l~~  440 (442)
T PRK13360        412 DILALSPPLIIEEAQIDELFDILAQALKE  440 (442)
T ss_pred             CEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence            5799995  34999999999999998763

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.12  E-value=4.9e-09  Score=93.09  Aligned_cols=198  Identities=12%  Similarity=0.026  Sum_probs=115.0

Q ss_pred             CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeEEEeccccccCCCc
Q 024997           34 DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEELMIFTISKLTGHAG   98 (259)
Q Consensus        34 ~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i~~~S~SK~~g~~G   98 (259)
                      ++..++++..-+--.|.+.         .++|+++|+++|+||++  |+.....+.    +.. .++  -+++|.++ .|
T Consensus       221 ~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~-PDi--v~~gK~l~-gG  296 (457)
T PRK05639        221 DEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVK-PDL--IIFGKGVA-SG  296 (457)
T ss_pred             CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCC-CCE--EEechhhc-CC
Confidence            3566644443343334433         28999999999999998  432211111    111 233  33899997 68


Q ss_pred             ceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 024997           99 SRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQE  178 (259)
Q Consensus        99 ~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  178 (259)
                      +.+|.+++. +++.+.. ......+.+.+++.-+++.+.++...+   ++.    .+..++.-+++.+.|+++..    .
T Consensus       297 ~pi~av~~~-~~i~~~~-~~~~~~T~~g~p~~~aaa~a~l~~l~~---~~l----~~~~~~~g~~l~~~L~~l~~----~  363 (457)
T PRK05639        297 MGLSGVIGR-KELMDLT-SGSALLTPAANPVISAAAEATLEIIEE---ENL----LKNALKVGEFIKKRLLEMKE----S  363 (457)
T ss_pred             CcceeEEeh-HHHHhhc-CCCcccCCCcCHHHHHHHHHHHHHHHH---ccH----HHHHHHHHHHHHHHHHHHHH----h
Confidence            899999999 6988832 212234677888888888888875422   222    34444455555555554320    0


Q ss_pred             ccccccccceeeCCCCCeeEEEecCC----Cc---hHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHH
Q 024997          179 IAPQYCTYFKKIRPPSPAYAWVKCER----EE---DKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLL  249 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~  249 (259)
                      .     ..+..+...| ..+-+.+..    .+   ...+...+.++|+.+.+.   +...+.+|++..-  +++++++++
T Consensus       364 ~-----~~~~~VrG~G-l~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~---g~~~~~lr~~Ppl~it~~~id~~~  434 (457)
T PRK05639        364 F-----EVIGDVRGKG-LMIGVEIVKENGKPDPELTGKICWRAFELGLILPSY---GMFGNVIRITPPLVITKEIAEKGL  434 (457)
T ss_pred             C-----CCEEeeccce-eEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeec---CCCCCEEEEeCCCccCHHHHHHHH
Confidence            0     0022223332 223333311    01   223444455689998763   2234789999743  999999999


Q ss_pred             HHHHHHhh
Q 024997          250 HRLDELIS  257 (259)
Q Consensus       250 ~~l~~~l~  257 (259)
                      ++|.+.++
T Consensus       435 ~~l~~~l~  442 (457)
T PRK05639        435 EIMERAIK  442 (457)
T ss_pred             HHHHHHHH
Confidence            99998875

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.12  E-value=4.5e-09  Score=92.67  Aligned_cols=204  Identities=14%  Similarity=0.117  Sum_probs=124.9

Q ss_pred             hhhhcccCC---CCceEEEEcCC--CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCe
Q 024997           25 ANLWGNASS---DTHLVEFVTAP--NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEE   84 (259)
Q Consensus        25 ~~~l~~~~~---~~~~~i~i~~p--~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~   84 (259)
                      .+.|++.+.   ++..+ ++..|  +.-.|.+.         .++|+++|+++|+||++  |+.....+.    +.. .+
T Consensus       193 l~~l~~~i~~~~~~iAA-vi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~-PD  270 (429)
T PRK06173        193 IEPLQDLLEQKGDEIAA-LILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVV-PD  270 (429)
T ss_pred             HHHHHHHHHhCCCcEEE-EEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCC-CC
Confidence            344556552   35666 44455  44444443         28999999999999998  432221111    111 22


Q ss_pred             EEEeccccccCCCc-ceEEEEEecCHHHHHHHHH-----hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 024997           85 LMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSA-----YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMK  158 (259)
Q Consensus        85 i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  158 (259)
                      |+  +++|.++ .| +-+|.++.. +++.+.+..     .....+++.+++.-+++.+.|+...+   ++    ..++++
T Consensus       271 iv--~~gK~l~-gG~~p~~a~~~~-~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~---~~----~~~~~~  339 (429)
T PRK06173        271 IM--CIGKALT-GGYLTLSATITT-EAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLE---SP----WQQNIQ  339 (429)
T ss_pred             EE--Eeehhhh-CCccccceEEec-HHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHh---CC----HHHHHH
Confidence            33  4999996 67 478888888 698887753     12334566788888888888875421   12    255666


Q ss_pred             HHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCCCeEEEE
Q 024997          159 KRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEARFVRLS  237 (259)
Q Consensus       159 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris  237 (259)
                      ++-+.+.+.|+.+.+.     +     .+..+... |...-+.+... ....+.+.+.++||.+.+.     + +.+|+.
T Consensus       340 ~~g~~l~~~L~~~~~~-----~-----~v~~vRg~-Gl~~~iel~~~~~~~~i~~~l~e~Gi~v~~~-----g-~~l~~~  402 (429)
T PRK06173        340 RIEAQLKQELAPAAEF-----D-----SVAEVRVL-GAIGVVEMKEPVNMATLQPRFVEHGIWVRPF-----G-KLVYIM  402 (429)
T ss_pred             HHHHHHHHHHHHhhcC-----C-----Ceeeeecc-ceEEEEEeCCcccHHHHHHHHHHCCeEEEec-----C-CEEEEe
Confidence            6666677777643211     0     02112222 33344444432 2344555566789999762     2 589999


Q ss_pred             ee--cChhhHHHHHHHHHHHhhh
Q 024997          238 LL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       238 ~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      ..  .+++++++++++|.+.+.+
T Consensus       403 Ppl~it~~ei~~~~~~l~~~l~~  425 (429)
T PRK06173        403 PPFIISPDELSQLTSGLLRVLKQ  425 (429)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHH
Confidence            74  3999999999999998864

>PRK07482 hypothetical protein; Provisional

Probab=99.12  E-value=4.7e-09  Score=93.41  Aligned_cols=210  Identities=13%  Similarity=0.059  Sum_probs=121.4

Q ss_pred             hhhhcccCC----CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEe
Q 024997           25 ANLWGNASS----DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIF   88 (259)
Q Consensus        25 ~~~l~~~~~----~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~   88 (259)
                      .+.|++.+.    ++..+|++.....-.|.+.         .++|+++|+++|.||++  |+.....+. ...+..=-+-
T Consensus       206 ~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv  285 (461)
T PRK07482        206 ADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLI  285 (461)
T ss_pred             HHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEE
Confidence            355666552    3456644443343334443         28999999999999998  532211111 1111111145


Q ss_pred             ccccccCCCcc-eEEEEEecCHHHHHHHHH-------hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 024997           89 TISKLTGHAGS-RFGWAVIKDEAVYQRMSA-------YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKR  160 (259)
Q Consensus        89 S~SK~~g~~G~-R~G~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  160 (259)
                      +++|.++ .|. .+|.+++. +++.+.+..       .....+++.+++.-+++.+.|+...+   ++.    .+..++.
T Consensus       286 ~~gKgl~-gG~~Pi~av~~~-~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~---~~l----~~~~~~~  356 (461)
T PRK07482        286 TVAKGLT-SAYAPLSGSIVG-EKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILER---ENL----VGNAAEV  356 (461)
T ss_pred             EEccccc-cCccccceeeec-HHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHh---CCH----HHHHHHH
Confidence            5799997 675 89999988 688887752       12345778899999999888886522   233    3344444


Q ss_pred             HHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-------c-----hHHHHHHHHHcCeeeecCCccc
Q 024997          161 WENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-------E-----DKDCYGILKAAKIIGREGKKFR  228 (259)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~ll~~~gi~~~~g~~f~  228 (259)
                      -+.+.+.|+++..    ..     ..+..+... |...-+.+...       +     ...+...+.++||.++++.   
T Consensus       357 g~~l~~~L~~l~~----~~-----~~v~~vrG~-Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~---  423 (461)
T PRK07482        357 GAYFRARLRAAFG----DH-----PLVGEVRGV-GMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMP---  423 (461)
T ss_pred             HHHHHHHHHHHHh----cC-----CCEEEEeec-eeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCC---
Confidence            4555555543210    00     002222333 33333433210       0     1234444557899886521   


Q ss_pred             CCCCeEEEEe--ecChhhHHHHHHHHHHHhh
Q 024997          229 AEARFVRLSL--LKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       229 ~~~~~~Ris~--~~~~~~~~~~~~~l~~~l~  257 (259)
                       ..+.+|+..  ..++++++++++++.+.++
T Consensus       424 -~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~  453 (461)
T PRK07482        424 -HGDILGFAPPLVLTRAEADEIVAIAKDAVD  453 (461)
T ss_pred             -CCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence             136789874  4599999999999998875

>PRK04311 selenocysteine synthase; Provisional

Probab=99.11  E-value=1.4e-08  Score=90.01  Aligned_cols=241  Identities=15%  Similarity=0.057  Sum_probs=139.2

Q ss_pred             hhhhccCccccc----ccChhhhcccCCCCceEEEEcCCCCC--Chh--hH-----HHhhcCCCcEEEeeccc--c----
Q 024997           10 QTDYFESVDYKF----EGEANLWGNASSDTHLVEFVTAPNNP--DGQ--MN-----KAVLKGPYAKSIYDHAY--F----   70 (259)
Q Consensus        10 ~~~~~g~~~~~~----~~d~~~l~~~~~~~~~~i~i~~p~NP--tG~--~~-----~~la~~~~~~vi~De~y--~----   70 (259)
                      ..+..|.+...+    ..++++++++++++++++++++++||  +|.  ..     .++|+++|+++|+|.+.  +    
T Consensus       187 ~~~~~G~~l~~v~~~~~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~  266 (464)
T PRK04311        187 VMRQAGARLVEVGTTNRTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLS  266 (464)
T ss_pred             HHHHCCcEEEEECCCCCCCHHHHHHhcCccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccch
Confidence            344456654222    24567889999999999999999998  452  22     48999999999999953  1    


Q ss_pred             --CCCCCCCC---CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcC
Q 024997           71 --WPHFAPIP---APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDG  145 (259)
Q Consensus        71 --~~~~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~  145 (259)
                        +....+..   ...+.+++++|.+|.+|.+  ..|++++. ++++++++.........+......+..+.+....+..
T Consensus       267 ~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp--~~G~i~g~-~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~  343 (464)
T PRK04311        267 QYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP--QAGIIVGK-KELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPE  343 (464)
T ss_pred             hccCCCCCchhhHHhcCCcEEEecCcccccCC--ceEEEEEc-HHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChh
Confidence              10011111   1245689999999998745  48999998 7999887742221122233333333333333221110


Q ss_pred             -------CcchHHHHHHHHHHHHHHHHHHHHhcCC--CccccccccccccceeeCCC--CCeeEEEecCCCchHHHHHHH
Q 024997          146 -------GNNIFEFGYNTMKKRWENLSKIISLSNR--FSLQEIAPQYCTYFKKIRPP--SPAYAWVKCEREEDKDCYGIL  214 (259)
Q Consensus       146 -------~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ll  214 (259)
                             ....+....++++++...+.+.|+....  +.....+....-.-...+..  -.+-+.++....+.+.+.+.|
T Consensus       344 ~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~~~~~~l~~~l  423 (464)
T PRK04311        344 KLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKDRSLEALAARL  423 (464)
T ss_pred             hhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCCCCHHHHHHHH
Confidence                   0112445567888899999999987541  11111111000000000111  112223333333567777788


Q ss_pred             HHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHhh
Q 024997          215 KAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       215 ~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l~  257 (259)
                      ++....+..    ....+.+.+-+-. .+++++..++++++++.
T Consensus       424 r~~~~~i~~----r~~~~~~~ld~r~~~~~~~~~~~~~~~~~~~  463 (464)
T PRK04311        424 RLLPPPVIG----RIEDGRLLLDLRTLEEEDEERLAAALLEALN  463 (464)
T ss_pred             hcCCCCEEE----EEECCEEEEEeCcCCHHHHHHHHHHHHHHhh
Confidence            765543332    1235777888755 88899999999998764

>PRK06062 hypothetical protein; Provisional

Probab=99.11  E-value=5.4e-09  Score=92.79  Aligned_cols=204  Identities=13%  Similarity=0.031  Sum_probs=119.1

Q ss_pred             hhhhcccCC----CCceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----C-CCCC
Q 024997           25 ANLWGNASS----DTHLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----A-PADE   83 (259)
Q Consensus        25 ~~~l~~~~~----~~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~-~~~~   83 (259)
                      ++.|++.+.    ++..+ ++..| ..-.|.+.         .++|+++|+++|+||++  |+.....+.    + .+| 
T Consensus       200 ~~~le~~l~~~~~~~iAa-viiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PD-  277 (451)
T PRK06062        200 LAHLERVIELEGPSTIAA-ILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPD-  277 (451)
T ss_pred             HHHHHHHHHhcCCCceEE-EEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCC-
Confidence            345666552    34556 44455 33334443         28999999999999998  532211110    1 222 


Q ss_pred             eEEEeccccccCCCcc-eEEEEEecCHHHHHHHHHh--hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 024997           84 ELMIFTISKLTGHAGS-RFGWAVIKDEAVYQRMSAY--ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKR  160 (259)
Q Consensus        84 ~i~~~S~SK~~g~~G~-R~G~i~~~~~~~~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  160 (259)
                         +-+++|.+| .|. .+|.+++. +++.+.+...  ....+++.+++.-+++.+.|+...+   ++.    .++.++.
T Consensus       278 ---i~t~gK~lg-gG~~Pigav~~~-~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~---~~l----~~~~~~~  345 (451)
T PRK06062        278 ---LITFAKGVN-SGYVPLGGVAIS-EAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEE---EGI----VENAARI  345 (451)
T ss_pred             ---eeeechhhh-cCCcCcEEEEEc-HHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---cCH----HHHHHHH
Confidence               568999997 674 89999999 6998887532  2345677888888888888876422   122    3333333


Q ss_pred             H-HHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC--C-------------chHHHHHHHHHcCeeeecC
Q 024997          161 W-ENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--E-------------EDKDCYGILKAAKIIGREG  224 (259)
Q Consensus       161 ~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------~~~~~~~ll~~~gi~~~~g  224 (259)
                      - .++.+.|+++..    ..+     .+..+...| .+.-+.+..  .             ....+...+.++||.+.+ 
T Consensus       346 G~~~l~~~L~~l~~----~~~-----~v~~vrG~G-l~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~-  414 (451)
T PRK06062        346 GAEVLGPGLRELAE----RHP-----SVGEVRGLG-VFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFV-  414 (451)
T ss_pred             HHHHHHHHHHHHHh----cCC-----cEEeEeccc-cEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEee-
Confidence            2 234444443321    000     011222232 222222210  0             022344455578998765 


Q ss_pred             CcccCCCCeEEEEe--ecChhhHHHHHHHHHHHhhh
Q 024997          225 KKFRAEARFVRLSL--LKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       225 ~~f~~~~~~~Ris~--~~~~~~~~~~~~~l~~~l~~  258 (259)
                          . .+.+||+.  ..++++++++++++.+.+++
T Consensus       415 ----~-~~~lrl~ppl~~t~~eid~~~~~l~~~l~~  445 (451)
T PRK06062        415 ----N-GNRIHVVPPCTVTEDEVREGLAILDAALAV  445 (451)
T ss_pred             ----c-CCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence                1 36789987  44999999999999988763

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.11  E-value=3.2e-08  Score=84.58  Aligned_cols=231  Identities=14%  Similarity=0.112  Sum_probs=153.4

Q ss_pred             hhhhhhccCcc----ccc--ccChhhhcccCC--CCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc-cCCC
Q 024997            8 QEQTDYFESVD----YKF--EGEANLWGNASS--DTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY-FWPH   73 (259)
Q Consensus         8 ~~~~~~~g~~~----~~~--~~d~~~l~~~~~--~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y-~~~~   73 (259)
                      ..+++..|.++    ..|  .+|++++++.++  ++.+++.+++.--+||...+     ++|+++|.++|+|.+- ++..
T Consensus        96 ~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~  175 (383)
T COG0075          96 AEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGE  175 (383)
T ss_pred             HHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCc
Confidence            34555566654    234  688899999995  46778888888889999983     8899999999999855 3322


Q ss_pred             CCCCCCCCCCeEEEeccccccC-CCcceEEEEEecCHHHHHHHHHh---------------h-h--hhcCCCCHHHHHHH
Q 024997           74 FAPIPAPADEELMIFTISKLTG-HAGSRFGWAVIKDEAVYQRMSAY---------------I-S--LNTMGVSRECQLRA  134 (259)
Q Consensus        74 ~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~i~~~~~~~~~~~~~~---------------~-~--~~~~~~~~~~q~~~  134 (259)
                      ...+ +.++-++++.+.=|.++ .||  +|.+..+ ++.++.+...               . .  ....-++...-++.
T Consensus       176 ~~~v-d~wgiDv~itgSQK~l~~PPG--la~v~~S-~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL  251 (383)
T COG0075         176 PLKV-DEWGIDVAITGSQKALGAPPG--LAFVAVS-ERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYAL  251 (383)
T ss_pred             ccch-hhcCccEEEecCchhccCCCc--cceeEEC-HHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHH
Confidence            2222 56778899999999995 689  8889988 5766665432               1 1  11122333333455


Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHH
Q 024997          135 FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYG  212 (259)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  212 (259)
                      ..+++..++.   . ++.+.++++++.+.++..++.++-   ..        +..-...+.....+..+..  +.+....
T Consensus       252 ~~al~~i~~E---G-le~r~~RH~~~~~a~r~~~~alGl---~~--------~~~~~~~s~tvta~~~P~g~~~~~~~~~  316 (383)
T COG0075         252 REALDLILEE---G-LEARIARHRRLAEALRAGLEALGL---EL--------FADPERRSPTVTAIKVPEGVDDKKVRRA  316 (383)
T ss_pred             HHHHHHHHHh---h-HHHHHHHHHHHHHHHHHHHHHcCC---cc--------ccCcccCCCceEEEECCCCCCcHHHHHH
Confidence            5666654322   2 677888999999999999998762   11        1101122333444555543  3345557


Q ss_pred             HHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          213 ILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       213 ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      +++++|+.+.+|..-- ....+||+...  ++.++..++..|...+.+
T Consensus       317 ~~~~~g~~i~gg~~~l-~gkifRIGhMG~~~~~dv~~~l~ale~~L~~  363 (383)
T COG0075         317 LLKEYGVEIAGGQGPL-KGKIFRIGHMGNVRPEDVLAALAALEAALRE  363 (383)
T ss_pred             HHHhCCEEeccccccc-CccEEEEecCccCCHHHHHHHHHHHHHHHHH
Confidence            8888899988765333 34789999743  889999999999887754

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.09  E-value=5.2e-09  Score=93.13  Aligned_cols=210  Identities=12%  Similarity=0.115  Sum_probs=121.3

Q ss_pred             ChhhhcccCC---CCceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCCCCCCCeEEEe
Q 024997           24 EANLWGNASS---DTHLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIPAPADEELMIF   88 (259)
Q Consensus        24 d~~~l~~~~~---~~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~~~~~~~i~~~   88 (259)
                      |++.|++.+.   ++..+ +|..| ..-.|.+.         .++|+++|+++|+||++  |...........+..--+.
T Consensus       232 d~~~l~~~l~~~~~~iAa-vI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~~ga~~~~gv~PDi~  310 (474)
T PLN02482        232 DLEAVKKLFEANKGEIAA-VILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYGGAQEYFGITPDLT  310 (474)
T ss_pred             ChHHHHHHHHhCCCceEE-EEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCcchHhHHhCCCCCEE
Confidence            6677777763   34555 55555 34344443         28999999999999998  3110000000001011146


Q ss_pred             ccccccCCCcceEEEEEecCHHHHHHHHHh---hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 024997           89 TISKLTGHAGSRFGWAVIKDEAVYQRMSAY---ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLS  165 (259)
Q Consensus        89 S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (259)
                      +++|.+| .|+.+|.+++. +++.+.+...   ....+++.+++..+++.+.|+.+.   .++    ..+++.++-+++.
T Consensus       311 t~gK~lg-gG~Pigav~g~-~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~---~~~----~~~~~~~~g~~l~  381 (474)
T PLN02482        311 TLGKVIG-GGLPVGAYGGR-REIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQ---QPG----TYEYLDKITKKLI  381 (474)
T ss_pred             Eecchhh-CCCceEEEEEc-HHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHh---ccC----HHHHHHHHHHHHH
Confidence            8899998 78999999988 7999987532   233466678888888888887641   122    3556666666666


Q ss_pred             HHHHhcCCCccccccccccccceee-CCCCCee-EEEecC---------CCc---hHHHHHHHHHcCeeeecCCcccCCC
Q 024997          166 KIISLSNRFSLQEIAPQYCTYFKKI-RPPSPAY-AWVKCE---------REE---DKDCYGILKAAKIIGREGKKFRAEA  231 (259)
Q Consensus       166 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~---------~~~---~~~~~~ll~~~gi~~~~g~~f~~~~  231 (259)
                      +.|+++..    .   .+   +... ...++++ +.+.-.         ..+   ...+...+.++||.+.|.. +.  .
T Consensus       382 ~~L~~l~~----~---~g---~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~-~~--~  448 (474)
T PLN02482        382 QGILEAGK----K---AG---HEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQ-FE--A  448 (474)
T ss_pred             HHHHHHHH----h---cC---CCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccC-CC--C
Confidence            66665421    0   00   0111 1222222 111110         011   1223334446899987721 11  1


Q ss_pred             CeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          232 RFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       232 ~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +.  +++..++++++++++++.+++.+
T Consensus       449 ~~--psl~ht~~dId~~l~al~~~l~~  473 (474)
T PLN02482        449 GF--TSLAHTEEDIDFTIAAAERVLAR  473 (474)
T ss_pred             Cc--CCCCCCHHHHHHHHHHHHHHHHh
Confidence            11  56667999999999999998864

>PRK05965 hypothetical protein; Provisional

Probab=99.09  E-value=7.9e-09  Score=91.94  Aligned_cols=208  Identities=11%  Similarity=0.081  Sum_probs=124.8

Q ss_pred             hhhcccCC----CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEec
Q 024997           26 NLWGNASS----DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFT   89 (259)
Q Consensus        26 ~~l~~~~~----~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S   89 (259)
                      +.+++.+.    ++..++++...+.-.|.+.         .++|+++|+++|.||++  |+.....+. +..+..=-+-+
T Consensus       202 ~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~  281 (459)
T PRK05965        202 AALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMT  281 (459)
T ss_pred             HHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeEE
Confidence            34565552    3566645444444445444         28999999999999998  532211111 11111112667


Q ss_pred             cccccCCCc-ceEEEEEecCHHHHHHHHH-------hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 024997           90 ISKLTGHAG-SRFGWAVIKDEAVYQRMSA-------YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRW  161 (259)
Q Consensus        90 ~SK~~g~~G-~R~G~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  161 (259)
                      ++|.++ .| +.+|.+++. +++.+.+..       .....+++.+++.-+++.+.|+...   .++    ..++.++.-
T Consensus       282 ~gKgl~-gG~~Pi~av~~~-~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~---~~~----l~~~~~~~g  352 (459)
T PRK05965        282 VAKGLT-SGYVPMGAVLMS-DHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYH---EGG----LLANGQKAG  352 (459)
T ss_pred             echhhc-cCCcceeEEEEc-HHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHH---hcc----HHHHHHHHH
Confidence            799997 78 599999999 699887753       2344578889998888888887542   122    244455555


Q ss_pred             HHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-C--------c---hHHHHHHHHHcCeeeecCCcccC
Q 024997          162 ENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-E--------E---DKDCYGILKAAKIIGREGKKFRA  229 (259)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~---~~~~~~ll~~~gi~~~~g~~f~~  229 (259)
                      +++.+.|+++...          ..+..+...| ..+-+.+.. .        +   ...+...+.++||.+.+     .
T Consensus       353 ~~l~~~l~~l~~~----------~~v~~vrG~G-l~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~-----~  416 (459)
T PRK05965        353 PRFAAGLDALRAH----------PLVGDVRGRG-LLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRA-----F  416 (459)
T ss_pred             HHHHHHHHhhccC----------CCEEEEeecc-eEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEe-----c
Confidence            5666666554211          0122233333 333333311 0        0   12344445578999875     2


Q ss_pred             CCCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          230 EARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       230 ~~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      +.+.+|++..  .++++++++++++.+.+++
T Consensus       417 g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~  447 (459)
T PRK05965        417 GDGVLGFAPALCCTEGEFDLIFERTRKTLDD  447 (459)
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence            3467888853  4999999999999988753

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.08  E-value=4.6e-09  Score=93.08  Aligned_cols=203  Identities=13%  Similarity=0.107  Sum_probs=124.3

Q ss_pred             hhhcccCC----CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----C-CCCCeE
Q 024997           26 NLWGNASS----DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----A-PADEEL   85 (259)
Q Consensus        26 ~~l~~~~~----~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~-~~~~~i   85 (259)
                      +.+++.+.    ++..++++.....-.|.+.         .++|+++|+++|+||++  |+.....+.    + .+|   
T Consensus       205 ~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PD---  281 (445)
T PRK09221        205 DDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPD---  281 (445)
T ss_pred             HHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCC---
Confidence            34555552    3455645444454445544         28999999999999998  532111111    1 122   


Q ss_pred             EEeccccccCCCc-ceEEEEEecCHHHHHHHHH-------hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 024997           86 MIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSA-------YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTM  157 (259)
Q Consensus        86 ~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  157 (259)
                       +-++||.++ .| +.+|.++++ +++.+.+..       .....+++.+++.-+++.+.|+...+   ++    ..++.
T Consensus       282 -i~~~gK~l~-gG~~Pi~av~~~-~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~---~~----l~~~~  351 (445)
T PRK09221        282 -IITFAKGLT-NGAIPMGAVIAS-DEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYRE---ED----LFERA  351 (445)
T ss_pred             -EEEeccccc-cCcccceeeEEc-HHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHh---cc----HHHHH
Confidence             568999997 56 678999998 699887753       12334677788888888887775421   12    35667


Q ss_pred             HHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC------chHHHHHHHHHcCeeeecCCcccCCC
Q 024997          158 KKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE------EDKDCYGILKAAKIIGREGKKFRAEA  231 (259)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~gi~~~~g~~f~~~~  231 (259)
                      ++.-+.+.+.|+++....          .+..+... |...-+.+...      ....+.+.+.++||.++++      .
T Consensus       352 ~~~g~~l~~~l~~l~~~~----------~v~~vrg~-Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~------~  414 (445)
T PRK09221        352 AELAPYFEDAVHSLKGLP----------HVIDIRNI-GLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYT------G  414 (445)
T ss_pred             HHHHHHHHHHHHhhccCC----------CEEEEecC-ceEEEEEEecccccccchHHHHHHHHHHCCeEEeec------C
Confidence            777777777777653211          02222222 23233333211      1123334455789998752      2


Q ss_pred             CeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          232 RFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       232 ~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      +.+||+..  .+++++++++++|++.+.+
T Consensus       415 ~~lr~~Ppl~~t~~eid~~~~~l~~~l~~  443 (445)
T PRK09221        415 DTIALSPPLIIEKAQIDELVDALGDALRA  443 (445)
T ss_pred             CEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence            67999953  4999999999999998863

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.08  E-value=8.8e-09  Score=91.45  Aligned_cols=203  Identities=10%  Similarity=0.060  Sum_probs=124.5

Q ss_pred             hhhcccCC---CCceEEEEcC-CCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----C-CCCCeE
Q 024997           26 NLWGNASS---DTHLVEFVTA-PNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----A-PADEEL   85 (259)
Q Consensus        26 ~~l~~~~~---~~~~~i~i~~-p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~-~~~~~i   85 (259)
                      +.+++.+.   ++..+|++.- .+.-.|.+.         .++|+++|+++|.||++  |+.....+.    + .+|   
T Consensus       209 ~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PD---  285 (453)
T PRK06943        209 ADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPD---  285 (453)
T ss_pred             HHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCC---
Confidence            45555552   4566644443 144445444         28999999999999998  532211111    1 222   


Q ss_pred             EEeccccccCCCc-ceEEEEEecCHHHHHHHHH------hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 024997           86 MIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSA------YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMK  158 (259)
Q Consensus        86 ~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  158 (259)
                       +-+++|.++ .| +.+|.+++. +++.+.+..      .....+++.+++.-+++.+.|+...   .++.    .++.+
T Consensus       286 -ivt~gKgl~-gG~~Pi~av~~~-~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~---~~~l----~~~~~  355 (453)
T PRK06943        286 -FLCLSKGIS-GGYLPLSLVLSR-DAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFA---EDDV----LARNA  355 (453)
T ss_pred             -eEeeehhhc-cCcccceEEEEc-HHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHH---hcCH----HHHHH
Confidence             556699998 78 599999999 699887753      1234577889999888888888652   2233    34455


Q ss_pred             HHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecC-CC--c---hHHHHHHHHHcCeeeecCCcccCCCC
Q 024997          159 KRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCE-RE--E---DKDCYGILKAAKIIGREGKKFRAEAR  232 (259)
Q Consensus       159 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~---~~~~~~ll~~~gi~~~~g~~f~~~~~  232 (259)
                      +.-+++.+.|+++...     +     .+..+... |...-+.+. +.  +   ...+...+.++||.+.+.     + +
T Consensus       356 ~~G~~l~~~L~~l~~~-----~-----~v~~vrG~-Gl~~gvel~~~~~~~~~~~~~i~~~~~~~Gll~~~~-----g-~  418 (453)
T PRK06943        356 RKSARLRAALAPLAAH-----P-----QVRHLRQR-GTIFAFDVALDGDAARTFSRRFFEAALERELLLRPI-----G-T  418 (453)
T ss_pred             HHHHHHHHHHHHHhcC-----C-----CEEeEecc-ccEEEEEEccCCCcchHHHHHHHHHHHHCCcEEEec-----C-C
Confidence            5555555555544210     0     02223333 333344443 11  1   123444455789998762     2 4


Q ss_pred             eEEEE--eecChhhHHHHHHHHHHHhhh
Q 024997          233 FVRLS--LLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       233 ~~Ris--~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      .+|++  +..+++++++++++|.+.+++
T Consensus       419 ~l~~~Ppl~it~~eid~~~~~l~~al~~  446 (453)
T PRK06943        419 TVYLMPPYVLDDDEIAWLAERTRATLDA  446 (453)
T ss_pred             EEEEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence            68999  455999999999999988763

>PRK07481 hypothetical protein; Provisional

Probab=99.07  E-value=1.2e-08  Score=90.70  Aligned_cols=200  Identities=14%  Similarity=0.076  Sum_probs=118.4

Q ss_pred             CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEeccccccCCCc-ce
Q 024997           34 DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFTISKLTGHAG-SR  100 (259)
Q Consensus        34 ~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G-~R  100 (259)
                      ++..+|++...+.-.|.+.         .++|+++|+++|.||++  |+.....+. ...+..--+-+++|.++ .| +.
T Consensus       212 ~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~-gG~~P  290 (449)
T PRK07481        212 DTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLAKGIT-SGYVP  290 (449)
T ss_pred             CcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEEeeccc-CCCcC
Confidence            3466644443343334433         38999999999999998  532111111 11111111566799997 67 58


Q ss_pred             EEEEEecCHHHHHHHHHh-------hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCC
Q 024997          101 FGWAVIKDEAVYQRMSAY-------ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNR  173 (259)
Q Consensus       101 ~G~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  173 (259)
                      +|.+++. +++.+.+...       ....+++.+++.-+++.+.|+...   .++    ..++.++.-+++.+.|+++..
T Consensus       291 i~av~~~-~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~---~~~----l~~~~~~~g~~l~~~L~~l~~  362 (449)
T PRK07481        291 LGATMVN-ARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVV---RED----LPANAAKRGAYLLEGLQPLKE  362 (449)
T ss_pred             ceEEEEc-HHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHH---hhh----HHHHHHHHHHHHHHHHHHHhh
Confidence            9999999 6998887532       234577889998888888887542   122    344555555556666655421


Q ss_pred             CccccccccccccceeeCCCCCeeEEEecCCC-------c-----hHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--
Q 024997          174 FSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-------E-----DKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--  239 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--  239 (259)
                          ..+     .+..+... |..+.+.+...       +     ...+...+.++||.+.+.     + +.+||+..  
T Consensus       363 ----~~~-----~i~~vrG~-Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~-----g-~~i~l~Ppl~  426 (449)
T PRK07481        363 ----RFE-----LVGDVRGK-GLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPS-----G-TKIILSPPLV  426 (449)
T ss_pred             ----cCC-----CeEEEeec-ceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEec-----C-CEEEEECCCC
Confidence                000     02222333 33334443210       0     123334455789999772     2 45899854  


Q ss_pred             cChhhHHHHHHHHHHHhhh
Q 024997          240 KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       240 ~~~~~~~~~~~~l~~~l~~  258 (259)
                      .++++++++++++.+.+++
T Consensus       427 it~~eid~~~~~l~~~l~~  445 (449)
T PRK07481        427 IQREDVDRIVDALDAGLSA  445 (449)
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            4999999999999998764

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.07  E-value=3.9e-08  Score=87.02  Aligned_cols=116  Identities=13%  Similarity=0.057  Sum_probs=77.4

Q ss_pred             CCCcccchhhhhhccCcc-------cccccChhhhcccCCCCceEEEEcCC-CCCChhh-HHHhhcCCCcEEEeeccc-c
Q 024997            1 MPFYPLYQEQTDYFESVD-------YKFEGEANLWGNASSDTHLVEFVTAP-NNPDGQM-NKAVLKGPYAKSIYDHAY-F   70 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~-------~~~~~d~~~l~~~~~~~~~~i~i~~p-~NPtG~~-~~~la~~~~~~vi~De~y-~   70 (259)
                      +|+|+.+...+...|.++       ..|.+|++.+++.+++++++|+++++ +||.-.- +.++|+++|++||+|+++ +
T Consensus       118 ~~t~~a~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~i~~~tkaVi~~~~~G~p~dl~~I~~la~~~gi~vIeDaa~a~  197 (438)
T PRK15407        118 AAGFPTTVNPIIQNGLVPVFVDVELPTYNIDASLLEAAVSPKTKAIMIAHTLGNPFDLAAVKAFCDKHNLWLIEDNCDAL  197 (438)
T ss_pred             CCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHcCcCCeEEEEeCCCCChhhHHHHHHHHHHCCCEEEEECccch
Confidence            478888888888888764       23678899999999889999888875 4554221 148999999999999998 3


Q ss_pred             CCCCCCC-CCCCCCeEEEeccc--cccCCCcceEEEEEecCHHHHHHHHHhh
Q 024997           71 WPHFAPI-PAPADEELMIFTIS--KLTGHAGSRFGWAVIKDEAVYQRMSAYI  119 (259)
Q Consensus        71 ~~~~~~~-~~~~~~~i~~~S~S--K~~g~~G~R~G~i~~~~~~~~~~~~~~~  119 (259)
                      +.....- .+... .+.+.||.  |.+. +|= -|+++++++++.+.++.+.
T Consensus       198 G~~~~g~~~G~~g-d~~~fSf~~~k~~~-~ge-GG~l~t~d~~l~~~~~~~~  246 (438)
T PRK15407        198 GSTYDGRMTGTFG-DIATLSFYPAHHIT-MGE-GGAVFTNDPLLKKIIESFR  246 (438)
T ss_pred             hhhcCCeeeeccC-ceEEEeCCCCCCcc-ccC-ceEEEECCHHHHHHHHHHH
Confidence            2111110 11111 44556664  5553 222 3999999878877666544

>PRK06105 aminotransferase; Provisional

Probab=99.06  E-value=1.4e-08  Score=90.38  Aligned_cols=207  Identities=14%  Similarity=0.054  Sum_probs=124.3

Q ss_pred             hhhcccC---C-CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEec
Q 024997           26 NLWGNAS---S-DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFT   89 (259)
Q Consensus        26 ~~l~~~~---~-~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S   89 (259)
                      +++++.+   . ++..+|++..-+.-.|.+.         .++|+++|+++|+||++  |+.....+. ...+-.--+-+
T Consensus       205 ~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~  284 (460)
T PRK06105        205 NELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILV  284 (460)
T ss_pred             HHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeee
Confidence            3455555   2 3456644443344344443         28999999999999998  532111111 11111111568


Q ss_pred             cccccCCCc-ceEEEEEecCHHHHHHHHHh-------hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 024997           90 ISKLTGHAG-SRFGWAVIKDEAVYQRMSAY-------ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRW  161 (259)
Q Consensus        90 ~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  161 (259)
                      ++|.++ .| +.+|.+++. +++.+.+...       ....+++.+++.-+++.+.|+...+   ++    ..+..++.-
T Consensus       285 ~gK~lg-gG~~P~~av~~~-~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~---~~----l~~~v~~~g  355 (460)
T PRK06105        285 MSKQLS-SSYQPLSAVLMN-EKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEE---RD----LVGNAAERG  355 (460)
T ss_pred             eecccc-cCcccceEEEEc-HHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHh---cc----HHHHHHHHH
Confidence            999997 56 689999999 6998887642       1345778889988888888886521   22    355666666


Q ss_pred             HHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC----------c--hHHHHHHHHHcCeeeecCCcccC
Q 024997          162 ENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE----------E--DKDCYGILKAAKIIGREGKKFRA  229 (259)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~ll~~~gi~~~~g~~f~~  229 (259)
                      +.+.+.|+++....          .+..+... |.+.-+.+...          .  ...+...+.++||.+.+.     
T Consensus       356 ~~l~~~L~~l~~~~----------~v~~vrG~-Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~-----  419 (460)
T PRK06105        356 ARLQARLRALADHP----------LVGEVRGV-GLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAM-----  419 (460)
T ss_pred             HHHHHHHHHhhcCC----------CeEEEEec-ceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEec-----
Confidence            66666666542110          12223333 33333333110          0  123444455789999762     


Q ss_pred             CCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          230 EARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       230 ~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      + +.+|++..-  ++++++++++++.+.+++
T Consensus       420 g-~~i~l~Ppl~it~~eid~~~~~l~~~l~~  449 (460)
T PRK06105        420 G-DTLAFCPPLIITAAQVDEMVDRFGRALDD  449 (460)
T ss_pred             C-CEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence            2 589999643  999999999999988753

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.05  E-value=8.1e-09  Score=91.89  Aligned_cols=182  Identities=13%  Similarity=0.037  Sum_probs=107.7

Q ss_pred             HhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHH
Q 024997           54 AVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSREC  130 (259)
Q Consensus        54 ~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (259)
                      ++|+++|+++|.||++  |+.....+. +..+..=-+-+++|.+| .|+.+|.+++. +++ +.+.......+++.+++.
T Consensus       259 ~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gKglg-gG~PlsAv~~~-~~~-~~~~~~~~~~T~~gnpla  335 (464)
T PRK06938        259 RITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIG-GSLPLAVVVYR-EWL-DTWQPGAHAGTFRGNQMA  335 (464)
T ss_pred             HHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEeecccc-CCCceEEEeeh-hHh-hccCCCCCCCCCCcCHHH
Confidence            8999999999999998  532111111 11111112566799997 78999999988 565 555433345678889999


Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-----
Q 024997          131 QLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-----  205 (259)
Q Consensus       131 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  205 (259)
                      .+++.+.|+...+   ++    ..++.++.-+++.+.|+++..    ..+     .+..+... |...-+.+...     
T Consensus       336 ~Aaa~a~L~~l~~---~~----l~~~~~~~G~~l~~~L~~l~~----~~~-----~i~~VrG~-Glm~gie~~~~~~~~~  398 (464)
T PRK06938        336 MAAGSATLRYIKE---HR----LAEHAAAMGERLREHLRQLQR----DYP-----QLGDVRGR-GLMLGVEIVDPQGEPD  398 (464)
T ss_pred             HHHHHHHHHHHHH---hH----HHHHHHHHHHHHHHHHHHHHH----hCC-----Ceeeeecc-ceEEEEEeccCccccc
Confidence            8988888875421   12    234444445555555554321    000     02222322 23333333110     


Q ss_pred             -------c---hHHHHHHHHHcCeeeecCCcccCCCCeEEEEe--ecChhhHHHHHHHHHHHhhh
Q 024997          206 -------E---DKDCYGILKAAKIIGREGKKFRAEARFVRLSL--LKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       206 -------~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~--~~~~~~~~~~~~~l~~~l~~  258 (259)
                             +   .+.+...+.++|+.+.++..   ..+.+|+..  ..++++++++++++.+.+.+
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~---~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~  460 (464)
T PRK06938        399 ALGHPPANGELASLIQRECLRRGLILELGGR---HGSVVRFLPPLIITAEQIDEVAEIFAEAVAA  460 (464)
T ss_pred             ccccCCccHHHHHHHHHHHHHCCeEEeecCC---CCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence                   1   12333444578999876421   136889975  34999999999999988753

>PRK06917 hypothetical protein; Provisional

Probab=99.04  E-value=2.5e-08  Score=88.46  Aligned_cols=182  Identities=15%  Similarity=0.088  Sum_probs=113.1

Q ss_pred             HhhcCCCcEEEeeccc--cCCCCCCCC----C-CCCCeEEEeccccccCCCcc-eEEEEEecCHHHHHHHHHh----hhh
Q 024997           54 AVLKGPYAKSIYDHAY--FWPHFAPIP----A-PADEELMIFTISKLTGHAGS-RFGWAVIKDEAVYQRMSAY----ISL  121 (259)
Q Consensus        54 ~la~~~~~~vi~De~y--~~~~~~~~~----~-~~~~~i~~~S~SK~~g~~G~-R~G~i~~~~~~~~~~~~~~----~~~  121 (259)
                      ++|+++|+++|.||++  |+.....+.    + .+|    +-+++|.++ .|. .+|.+++. +++.+.+...    ...
T Consensus       228 ~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PD----i~~~gK~l~-~G~~Pi~a~~~~-~~i~~~~~~~~~~~~~~  301 (447)
T PRK06917        228 EICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPD----IMTLGKGLG-AGYTPIAATVVS-DRVMEPILRGSRSIMSG  301 (447)
T ss_pred             HHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCC----EEEeeehhc-cCCcceEEEEEc-HHHHHHHhccCcccccc
Confidence            8999999999999998  422111111    1 222    468899997 785 89999999 7998887642    223


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEe
Q 024997          122 NTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVK  201 (259)
Q Consensus       122 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (259)
                      .+++.+++..+++.+.++.+.+   ++    ..+++++.-+++.+.|+++..    ..+     .+..+...| ....+.
T Consensus       302 ~T~~gnpl~~aaa~a~l~~l~~---~~----l~~~~~~~g~~l~~~L~~l~~----~~~-----~i~~vrG~G-l~~~ie  364 (447)
T PRK06917        302 HTLSANPLSAATALAVLEYMEK---HN----LPEKAAEKGEYLIKGLQKVQQ----QST-----IIGDVRGKG-LLIGVE  364 (447)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHH---CC----HHHHHHHHHHHHHHHHHHHHh----cCC-----CEEEEeecc-eEEEEE
Confidence            4678889998888888885421   22    345566666666666665431    000     022233333 333333


Q ss_pred             cCC-------C--c---hHHHHHHHHHcCeeeecCCc-c-cCCCCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          202 CER-------E--E---DKDCYGILKAAKIIGREGKK-F-RAEARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       202 ~~~-------~--~---~~~~~~ll~~~gi~~~~g~~-f-~~~~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      +..       .  +   ...+...+.++||.+.+... . +...+.+|++..  .++++++++++++.+.+++
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~  437 (447)
T PRK06917        365 FVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEE  437 (447)
T ss_pred             EeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence            310       0  0   23344445578999987421 1 112478999865  5999999999999988753

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.03  E-value=2e-08  Score=89.52  Aligned_cols=206  Identities=12%  Similarity=0.083  Sum_probs=119.3

Q ss_pred             hhhcccCC---CCceEEEEcCC--CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEe
Q 024997           26 NLWGNASS---DTHLVEFVTAP--NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIF   88 (259)
Q Consensus        26 ~~l~~~~~---~~~~~i~i~~p--~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~   88 (259)
                      +.+++.+.   ++..+ +|..|  +.-.|.+.         .++|+++|+++|.||++  |+.....+. +..+-.--+-
T Consensus       224 ~~l~~~~~~~~~~iAA-vI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv  302 (472)
T PRK08742        224 DALQALFEQSPGEICA-LILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLL  302 (472)
T ss_pred             HHHHHHHHhCCCceEE-EEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEE
Confidence            44555552   35566 55555  44445443         28999999999999998  532111111 1111111255


Q ss_pred             ccccccCCCc-ceEEEEEecCHHHHHHHHH------hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 024997           89 TISKLTGHAG-SRFGWAVIKDEAVYQRMSA------YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRW  161 (259)
Q Consensus        89 S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  161 (259)
                      +++|.++ .| +.+|.+++. +++.+.+..      .....+++.+++.-+++.+.|+...+   ++.++ ..+++-++.
T Consensus       303 ~~gKgl~-gG~~Plaav~~~-~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~---~~l~~-~~~~~g~~l  376 (472)
T PRK08742        303 CLSKGLT-GGFLPLSAVLAT-QQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFAD---DDVIA-RNQPTAARM  376 (472)
T ss_pred             EEccccc-CCCCCcceeecc-HHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHH---CCHHH-HHHHHHHHH
Confidence            6799997 68 489999999 699887753      12345678899988888888886522   22222 222222222


Q ss_pred             HHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-C--------c---hHHHHHHHHHcCeeeecCCcccC
Q 024997          162 ENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-E--------E---DKDCYGILKAAKIIGREGKKFRA  229 (259)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~---~~~~~~ll~~~gi~~~~g~~f~~  229 (259)
                      ..+.+.+++++.             +..+... |+..-+.+.. .        +   ...+.+.+.++||.+++.     
T Consensus       377 ~~~~~~~~~~~~-------------i~dvRG~-Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-----  437 (472)
T PRK08742        377 TQLAAQIGEHPH-------------VADVRQA-GMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPL-----  437 (472)
T ss_pred             HHHHHHHhcCCC-------------eeeEecc-ceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEec-----
Confidence            222222332221             2223333 3333333321 0        0   122334445789999762     


Q ss_pred             CCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          230 EARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       230 ~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      + +.+||...-  +++++++++++|.+.+++
T Consensus       438 g-~vi~~~PpL~it~~ei~~~~~~l~~~l~~  467 (472)
T PRK08742        438 G-DVLYWMPPYCVDEAQLALLADTTRHAIDE  467 (472)
T ss_pred             C-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            2 689998743  999999999999998864

>PRK07480 putative aminotransferase; Validated

Probab=99.03  E-value=2e-08  Score=89.20  Aligned_cols=198  Identities=12%  Similarity=0.057  Sum_probs=116.8

Q ss_pred             CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEeccccccCCCcc-e
Q 024997           34 DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFTISKLTGHAGS-R  100 (259)
Q Consensus        34 ~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~-R  100 (259)
                      ++..+|++...+.-.|.+.         .++|+++|+++|.||++  |+.....+. ...+..--+-+++|.++ .|. .
T Consensus       218 ~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~-gG~~P  296 (456)
T PRK07480        218 DNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTIAKGLT-SGYIP  296 (456)
T ss_pred             CcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeeeeehhhc-cCCcc
Confidence            3566644444343334433         28999999999999998  532221111 11111111568899997 674 8


Q ss_pred             EEEEEecCHHHHHHHHH----hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHH-HHHHHHHHHHHHhcCCCc
Q 024997          101 FGWAVIKDEAVYQRMSA----YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTM-KKRWENLSKIISLSNRFS  175 (259)
Q Consensus       101 ~G~i~~~~~~~~~~~~~----~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~  175 (259)
                      +|.+++. +++.+.+..    .....+++.+++..+++.+.|+...+   ++.    .++. ++.-+++.+.|+.+....
T Consensus       297 i~av~~~-~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~---~~l----~~~~~~~~g~~l~~~l~~l~~~~  368 (456)
T PRK07480        297 MGAVGVG-DRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRD---EGI----VERVRDDTGPYLQKRLRELADHP  368 (456)
T ss_pred             ceEEEEc-HHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHh---CCH----HHHHHHHHHHHHHHHHHHhhcCC
Confidence            9999999 699887732    23446788999999999999886522   222    3334 244444445554422100


Q ss_pred             cccccccccccceeeCCCCCeeEEEecCCC--------c----hHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--C
Q 024997          176 LQEIAPQYCTYFKKIRPPSPAYAWVKCERE--------E----DKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--S  241 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~  241 (259)
                                .+..+...| ...-+.+...        +    ...+...+.++||.+.+     . .+.+|++...  +
T Consensus       369 ----------~i~~vrG~G-lm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~-----~-~~~l~~~Ppl~it  431 (456)
T PRK07480        369 ----------LVGEVRGVG-LVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRA-----V-GDRMIISPPLVIT  431 (456)
T ss_pred             ----------CeeeEEeec-ceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEee-----c-CCEEEEECCCCCC
Confidence                      022223333 3333333110        0    12344445578999865     1 2578999765  9


Q ss_pred             hhhHHHHHHHHHHHhh
Q 024997          242 QDDFDLLLHRLDELIS  257 (259)
Q Consensus       242 ~~~~~~~~~~l~~~l~  257 (259)
                      ++++++++++|.+.+.
T Consensus       432 ~~eid~~~~~l~~al~  447 (456)
T PRK07480        432 HAEIDELVEKARKALD  447 (456)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988875

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.00  E-value=2e-08  Score=89.03  Aligned_cols=175  Identities=13%  Similarity=0.077  Sum_probs=99.2

Q ss_pred             HhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHH-----hhhhh
Q 024997           54 AVLKGPYAKSIYDHAY--FWPHFAPIP----APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSA-----YISLN  122 (259)
Q Consensus        54 ~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~-----~~~~~  122 (259)
                      ++|+++|+++|.||++  |+.....+.    +.. .+  +-+++|.++ .|   |.+. . +++.+.+..     .....
T Consensus       253 ~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~-PD--iv~~gK~l~-~~---a~l~-~-~~i~~~~~~~~~~~~~~~~  323 (443)
T PRK08297        253 ELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVR-PD--IVAFGKKTQ-VC---GIMA-G-RRVDEVEDNVFAVSSRINS  323 (443)
T ss_pred             HHHHHcCCEEEEechhhccCccchHHHHHhcCCC-CC--EEEeccccc-cc---ceec-c-hHHHHhhhhhccCccccCC
Confidence            8999999999999999  532211110    111 12  336899985 22   4444 4 243322211     12446


Q ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEec
Q 024997          123 TMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKC  202 (259)
Q Consensus       123 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (259)
                      +++.+++...++.+.++...   .++.    .++.++.-+.+.+.|+++..    ..+.    ....+... |..+.+.+
T Consensus       324 T~~gnpl~~aaa~a~L~~l~---~~~l----~~~~~~~g~~l~~~L~~l~~----~~~~----~~~~vrg~-G~~~~i~~  387 (443)
T PRK08297        324 TWGGNLVDMVRARRILEVIE---EDGL----VENAARQGEYLLARLEELAA----EFPA----VVSNVRGR-GLMCAFDL  387 (443)
T ss_pred             CCCccHHHHHHHHHHHHHHH---hcCH----HHHHHHHHHHHHHHHHHHHH----HCCC----cceeeecc-ceEEEEEe
Confidence            77889998888888887542   2233    34444444555555544320    0000    01122333 45555666


Q ss_pred             CCCc-hHHHHHHHHHcCeeeecCCcccCCCCeEEEEe--ecChhhHHHHHHHHHHHhhh
Q 024997          203 EREE-DKDCYGILKAAKIIGREGKKFRAEARFVRLSL--LKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       203 ~~~~-~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~--~~~~~~~~~~~~~l~~~l~~  258 (259)
                      .... ...+...+.++||.+.|+     +.+.+|++.  ..+++++++++++|.+++.+
T Consensus       388 ~~~~~~~~~~~~l~~~Gvl~~~~-----~~~~lr~~P~l~~t~~eid~~l~~l~~~l~~  441 (443)
T PRK08297        388 PTTADRDEVIRRLWEEGVLVLPC-----GERSIRFRPALTVTTEEIDAAIDALRRALPE  441 (443)
T ss_pred             cCHHHHHHHHHHHHHCCEEEecC-----CCCeEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence            4321 223334444789999873     235688854  45999999999999998763

>PRK12403 putative aminotransferase; Provisional

Probab=98.99  E-value=6.1e-08  Score=86.34  Aligned_cols=177  Identities=11%  Similarity=0.041  Sum_probs=105.4

Q ss_pred             HhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeEEEeccccccCCCcc-eEEEEEecCHHHHHHHHHh----hhhh
Q 024997           54 AVLKGPYAKSIYDHAY--FWPHFAPIP----APADEELMIFTISKLTGHAGS-RFGWAVIKDEAVYQRMSAY----ISLN  122 (259)
Q Consensus        54 ~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i~~~S~SK~~g~~G~-R~G~i~~~~~~~~~~~~~~----~~~~  122 (259)
                      ++|+++|+++|.||++  |+.....+.    +..+ +|+  +++|.+| .|. .+|.+++. +++.+.+...    ....
T Consensus       250 ~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~P-Div--~~gK~lg-gG~~Piga~v~~-~~i~~~~~~~~~~~~~~~  324 (460)
T PRK12403        250 RICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEP-DTL--SIAKGLT-SGYVPMGGLVLS-KRIAEALVEQGGVFAHGL  324 (460)
T ss_pred             HHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCC-CeE--EEccccc-ccccceEEEEEC-HHHHHHHhcCCCccccCC
Confidence            8999999999999998  532221111    2222 333  5899997 684 89999988 6998877531    2345


Q ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH-HHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEe
Q 024997          123 TMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMK-KRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVK  201 (259)
Q Consensus       123 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (259)
                      +++.+++.-+++.+.|+...   .++.    .++++ ++-+++.+.|+++..    ..     ..+..+... |....+.
T Consensus       325 T~~gnPl~~Aaala~L~~i~---~~~l----~~~~~~~~g~~l~~~L~~l~~----~~-----~~i~~vrG~-Gl~~gie  387 (460)
T PRK12403        325 TYSGHPVAAAVAIANLKALR---DEGV----VTRVKDDTGPYLQRCLREVFG----DH-----PLVGEVQGA-GLVAALQ  387 (460)
T ss_pred             CCCCCHHHHHHHHHHHHHHH---hccH----HHHHHHHHHHHHHHHHHHHHh----cC-----CCEEeEeec-ceEEEEE
Confidence            67788988888888887642   1222    33343 444444444443210    00     002222333 3333343


Q ss_pred             cCCC-------c-----hHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          202 CERE-------E-----DKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       202 ~~~~-------~-----~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      +...       .     ...+...+.++|+.+.+.     + +.+|++...  ++++++++++.+.+.+++
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-----~-~~~~l~Ppl~it~~eid~~~~~l~~al~~  452 (460)
T PRK12403        388 FAEDKATRKRFANENDLAWRCRTIGFEEGVIIRST-----L-GRMIMAPALVAGRAEIDELVDKTRIAVDR  452 (460)
T ss_pred             EccCccccccccchhHHHHHHHHHHHhCCEEEEec-----C-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            3210       0     111223345689999751     1 458888755  999999999999988753

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=98.99  E-value=2.9e-08  Score=88.30  Aligned_cols=202  Identities=11%  Similarity=0.027  Sum_probs=118.3

Q ss_pred             hhcccCC--CCceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeEEEe
Q 024997           27 LWGNASS--DTHLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEELMIF   88 (259)
Q Consensus        27 ~l~~~~~--~~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i~~~   88 (259)
                      .|++.+.  ++..+ +|..| .+. |.+.         .++|+++|+++|.||++  |+.....+.    +.. .+++  
T Consensus       219 ~l~~~i~~~~~vAa-vIvEPv~g~-g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~-PDiv--  293 (459)
T PRK06082        219 YLEYVIEKEGGIGA-FIAEAVRNT-DVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIE-PDIL--  293 (459)
T ss_pred             HHHHHHhcCCCEEE-EEECCccCC-CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCC-CCEE--
Confidence            4566553  34556 45555 433 3322         28999999999999998  432111111    111 1233  


Q ss_pred             ccccccCCCc-ceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHH
Q 024997           89 TISKLTGHAG-SRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKI  167 (259)
Q Consensus        89 S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
                      +++|.+| .| +.+|.+++. +++.+.+.......+.+.+++.-+++.+.|+...+   ++    ..++++++-+++.+.
T Consensus       294 ~~gKgl~-gG~~P~~av~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~---~~----l~~~~~~~g~~l~~~  364 (459)
T PRK06082        294 CIGKGLG-GGLVPIAAMITK-DKYNTAAQISLGHYTHEKSPLGCAAALATIEVIEQ---EG----LLEKVKADSQFMRER  364 (459)
T ss_pred             Eeccccc-CCCCcceEEEEc-HHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHh---cC----HHHHHHHHHHHHHHH
Confidence            4899998 67 589999998 57765442111125678889888888888875421   22    355566666666666


Q ss_pred             HHhcCCCccccccccccccceeeCCCCCeeEEEecCC------Cc---hHHHHHHHHHcCeeeecCCcccCCCCeEEEEe
Q 024997          168 ISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER------EE---DKDCYGILKAAKIIGREGKKFRAEARFVRLSL  238 (259)
Q Consensus       168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~  238 (259)
                      |+++..    ..     ..+..+... |...-+.+..      .+   ...+...+.++||.+.+.     +.+.+|++.
T Consensus       365 L~~l~~----~~-----~~i~~vrG~-Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~-----~~~~i~~~P  429 (459)
T PRK06082        365 LLEMKA----KY-----PLIGDVRGI-GLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVS-----QGNVIQLSP  429 (459)
T ss_pred             HHHHHh----hC-----CCeeeeeec-cceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEec-----CCCEEEEeC
Confidence            655321    00     002223333 3333444421      01   122333344789988762     237899996


Q ss_pred             e--cChhhHHHHHHHHHHHhh
Q 024997          239 L--KSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       239 ~--~~~~~~~~~~~~l~~~l~  257 (259)
                      .  .++++++++++++.+.+.
T Consensus       430 pl~it~~eid~~~~~l~~~l~  450 (459)
T PRK06082        430 PLIITREELTQALAILEEAIA  450 (459)
T ss_pred             CCccCHHHHHHHHHHHHHHHH
Confidence            4  499999999999998875

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=98.98  E-value=5e-09  Score=89.52  Aligned_cols=84  Identities=12%  Similarity=0.079  Sum_probs=69.9

Q ss_pred             cccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc-cCCCCCCCCCCCCCeEEEecccccc
Q 024997           21 FEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY-FWPHFAPIPAPADEELMIFTISKLT   94 (259)
Q Consensus        21 ~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y-~~~~~~~~~~~~~~~i~~~S~SK~~   94 (259)
                      ...|.+.|++.++++|+++.|...+|-+|.+++     ++|+++|+.+++|.++ .+.....+ +..+-+++..|..|.|
T Consensus       167 ~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV-~eln~D~~s~s~HK~y  245 (428)
T KOG1549|consen  167 GLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDV-QELNADFLSISAHKIY  245 (428)
T ss_pred             ccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCccccH-HHcCchheeeeccccc
Confidence            357778899999999999999999999999995     7899999999999977 22211122 3456688999999999


Q ss_pred             CCCcceEEEEEec
Q 024997           95 GHAGSRFGWAVIK  107 (259)
Q Consensus        95 g~~G~R~G~i~~~  107 (259)
                      |.+|  +|++++.
T Consensus       246 gp~~--iGaLYvr  256 (428)
T KOG1549|consen  246 GPPG--IGALYVR  256 (428)
T ss_pred             CCCc--ceEEEEc
Confidence            9999  9999988

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=98.98  E-value=3.5e-08  Score=84.80  Aligned_cols=211  Identities=15%  Similarity=0.147  Sum_probs=130.0

Q ss_pred             cChhhhcccCC---CCceEEEEcCC--CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCCCCCCCeEE
Q 024997           23 GEANLWGNASS---DTHLVEFVTAP--NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIPAPADEELM   86 (259)
Q Consensus        23 ~d~~~l~~~~~---~~~~~i~i~~p--~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~~~~~~~i~   86 (259)
                      .|++.+++++.   ++..+ ||..|  .| -|.+.         .++|+++|+++|.||+.  |.-+.....+..+-.--
T Consensus       185 ND~~al~~~~~~~g~~IAa-VIvEPv~gn-~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PD  262 (432)
T COG0001         185 NDLEALEEAFEEYGDDIAA-VIVEPVAGN-MGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPD  262 (432)
T ss_pred             CCHHHHHHHHHHcCCcEEE-EEeccccCC-CCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcc
Confidence            46777888773   35666 66666  45 22222         38999999999999988  42111111111111222


Q ss_pred             EeccccccCCCcceEEEEEecCHHHHHHHHHhh---hhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 024997           87 IFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI---SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWEN  163 (259)
Q Consensus        87 ~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (259)
                      +.++.|+.| -|+.+|.+.+. +++.+.+....   ...+.+.+++...++.+.++...+.  +.    .++++.+..++
T Consensus       263 lttlGKiIG-GGlP~ga~gGr-~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~--~~----~y~~l~~~~~~  334 (432)
T COG0001         263 LTTLGKIIG-GGLPIGAFGGR-AEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTE--EG----VYERLDALGER  334 (432)
T ss_pred             hhhhhhhhc-CCcceeeeccH-HHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhc--cc----HHHHHHHHHHH
Confidence            889999998 99999999999 79999876543   3467888999999998888864221  11    35566666666


Q ss_pred             HHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecC----CC------c----hHHHHHHHHHcCeeeecCCcccC
Q 024997          164 LSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCE----RE------E----DKDCYGILKAAKIIGREGKKFRA  229 (259)
Q Consensus       164 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------~----~~~~~~ll~~~gi~~~~g~~f~~  229 (259)
                      |.+.|+++..       ..+.+ +.. ...++++-+.=.+    +.      +    ..++..+| ++||.+.|.. |  
T Consensus       335 L~~gl~~~~~-------~~g~~-~~v-~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l-~~GV~l~ps~-~--  401 (432)
T COG0001         335 LAEGLRAAAE-------RHGIP-LTV-NRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLL-NRGVYLAPSQ-F--  401 (432)
T ss_pred             HHHHHHHHHH-------HhCCC-eEE-eeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHH-hCCcccCCcc-c--
Confidence            6666665321       11111 111 2223332222111    11      1    24455455 6899998832 1  


Q ss_pred             CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          230 EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       230 ~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                        ...=+|.++++++++..++.+.+++++
T Consensus       402 --ea~flS~ahte~di~~~~~a~~~~~~~  428 (432)
T COG0001         402 --EAGFLSTAHTEEDIDRTLEAADEAFKE  428 (432)
T ss_pred             --cceeeecccCHHHHHHHHHHHHHHHHH
Confidence              123577778999999999999887753

>PRK07483 hypothetical protein; Provisional

Probab=98.97  E-value=4.2e-08  Score=86.93  Aligned_cols=182  Identities=16%  Similarity=0.116  Sum_probs=110.2

Q ss_pred             HhhcCCCcEEEeeccc--cCCCCCCCC----C-CCCCeEEEeccccccCCCcc-eEEEEEecCHHHHHHHHHh----hhh
Q 024997           54 AVLKGPYAKSIYDHAY--FWPHFAPIP----A-PADEELMIFTISKLTGHAGS-RFGWAVIKDEAVYQRMSAY----ISL  121 (259)
Q Consensus        54 ~la~~~~~~vi~De~y--~~~~~~~~~----~-~~~~~i~~~S~SK~~g~~G~-R~G~i~~~~~~~~~~~~~~----~~~  121 (259)
                      ++|+++|+++|.||++  |+.....+.    + .+|    +-+++|.++ .|+ .+|.+++. +++.+.+...    ...
T Consensus       228 ~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PD----iv~~gK~l~-gG~~Pi~av~~~-~~i~~~~~~~~~~~~h~  301 (443)
T PRK07483        228 EVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPD----LVTIAKGLG-AGYQPIGAVLAS-DRIYDAIADGSGFFQHG  301 (443)
T ss_pred             HHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCC----eeeehhhhc-cCccccEEEEEc-HHHHHHHhcCCCccccC
Confidence            8999999999999998  532111110    1 223    566799997 785 89999999 6998877532    234


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEe
Q 024997          122 NTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVK  201 (259)
Q Consensus       122 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (259)
                      .+++.+++.-+++.+.++.+.+   ++.    .+..++.-+++.+.|+++..    ..+     .+..+...| ...-+.
T Consensus       302 ~T~~gnpl~~aaa~a~l~~i~~---~~l----~~~~~~~g~~l~~~L~~l~~----~~~-----~i~~vRG~G-lm~gie  364 (443)
T PRK07483        302 HTYLGHATACAAALAVQRVIAE---DGL----LANVRARGEQLRARLRERLG----QHP-----HVGDIRGRG-LFVGVE  364 (443)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh---cCH----HHHHHHHHHHHHHHHHHHHh----cCC-----CeeeEeecc-cEEEEE
Confidence            5788899998888888876522   233    44444555555555543210    000     022223332 222232


Q ss_pred             cCCC---------c---hHHHHHHHHHcCeeeecCCc-c-cCCCCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          202 CERE---------E---DKDCYGILKAAKIIGREGKK-F-RAEARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       202 ~~~~---------~---~~~~~~ll~~~gi~~~~g~~-f-~~~~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      +...         +   .+.+...+.++|+.+.+... . +...+.+||...  .+++++++++++|.+.+.+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~  437 (443)
T PRK07483        365 LVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDA  437 (443)
T ss_pred             EeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            2110         1   12344445578999987321 1 111368999863  3999999999999988763

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=98.97  E-value=9.3e-08  Score=82.59  Aligned_cols=208  Identities=15%  Similarity=0.090  Sum_probs=125.0

Q ss_pred             ccccChhhhcccCC-CCceEEEEcCCCCCChhhH---HHhhcCCCcEEEeecccc-----CC-CCCCCCCCCCCeEEEec
Q 024997           20 KFEGEANLWGNASS-DTHLVEFVTAPNNPDGQMN---KAVLKGPYAKSIYDHAYF-----WP-HFAPIPAPADEELMIFT   89 (259)
Q Consensus        20 ~~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~---~~la~~~~~~vi~De~y~-----~~-~~~~~~~~~~~~i~~~S   89 (259)
                      ...+|.+++++.+. .++++|++..=+.|-=.-+   .++|.+.|++++.|-++.     +. ...+++   .-.++.+|
T Consensus       153 ~~~ID~d~l~~~a~~~kPklIi~G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~---~ADvvt~s  229 (399)
T PF00464_consen  153 TGLIDYDELEKLAKEHKPKLIICGASSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFP---YADVVTGS  229 (399)
T ss_dssp             TSSB-HHHHHHHHHHH--SEEEEE-SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCC---TSSEEEEE
T ss_pred             CCeECHHHHHHHHhhcCCCEEEECchhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCccc---cceEEEee
Confidence            45788888998884 4899966555444443334   489999999999999983     22 222332   24799999


Q ss_pred             cccccCCCcceEEEEEec-------------CHHHHHHHHHhhhhhcCCCCHHHHHHHH-HHHHHHHhcCCcchHHHHHH
Q 024997           90 ISKLTGHAGSRFGWAVIK-------------DEAVYQRMSAYISLNTMGVSRECQLRAF-KLLKVVLEDGGNNIFEFGYN  155 (259)
Q Consensus        90 ~SK~~g~~G~R~G~i~~~-------------~~~~~~~~~~~~~~~~~~~~~~~q~~~~-~~l~~~~~~~~~~~~~~~~~  155 (259)
                      +.|+|  +|=|-|.|.+.             ++++.+++.+..-+...+.+.....++. -.+.+.    ....+.+..+
T Consensus       230 ThKtl--~GPrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea----~~~~fk~Ya~  303 (399)
T PF00464_consen  230 THKTL--RGPRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEA----LSPEFKEYAK  303 (399)
T ss_dssp             SSGGG---SSS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHH----TSHHHHHHHH
T ss_pred             ccccc--cccCceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcc----cCHHHHHHHH
Confidence            99998  35556999888             4689999988776655555555444433 233321    2234567788


Q ss_pred             HHHHHHHHHHHHHHhcCCCccccccccccccceeeCC-CCCeeEEEecCCC--chHHHHHHHHHcCeeee----cCCccc
Q 024997          156 TMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP-PSPAYAWVKCERE--EDKDCYGILKAAKIIGR----EGKKFR  228 (259)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~----~g~~f~  228 (259)
                      ++-+|.+.|.+.|.+.+              ++.... ...-.+|+++...  +...+.+.|++.||.+.    |+..-.
T Consensus       304 qVv~NAk~La~~L~~~G--------------~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d~~~  369 (399)
T PF00464_consen  304 QVVKNAKALAEALQERG--------------FKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGDRSP  369 (399)
T ss_dssp             HHHHHHHHHHHHHHHTT---------------EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTTSTT
T ss_pred             HHHHHHHHHHHHHhhCC--------------cEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCCCCC
Confidence            89999999999999866              332221 1222567888653  56788899999999874    333111


Q ss_pred             CCCCeEEEEeec------ChhhHHHHHH
Q 024997          229 AEARFVRLSLLK------SQDDFDLLLH  250 (259)
Q Consensus       229 ~~~~~~Ris~~~------~~~~~~~~~~  250 (259)
                      ..+..+||+...      .++++++..+
T Consensus       370 ~~~sGlRlGT~~lT~rG~~e~dm~~iA~  397 (399)
T PF00464_consen  370 FVPSGLRLGTPALTRRGMKEEDMKEIAE  397 (399)
T ss_dssp             TT-SEEEEESHHHHHTT--HHHHHHHHH
T ss_pred             CCCCEEEECCHHHHhCCCCHHHHHHHHh
Confidence            124689999732      4555555443

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PLN02271 serine hydroxymethyltransferase

Probab=98.97  E-value=1.2e-07  Score=84.54  Aligned_cols=214  Identities=12%  Similarity=0.007  Sum_probs=134.1

Q ss_pred             ccChhhhcc-cCCCCceEEEEcCCCCCChhhH---HHhhcCCCcEEEeeccccCC----CCCCCCCCCCCeEEEeccccc
Q 024997           22 EGEANLWGN-ASSDTHLVEFVTAPNNPDGQMN---KAVLKGPYAKSIYDHAYFWP----HFAPIPAPADEELMIFTISKL   93 (259)
Q Consensus        22 ~~d~~~l~~-~~~~~~~~i~i~~p~NPtG~~~---~~la~~~~~~vi~De~y~~~----~~~~~~~~~~~~i~~~S~SK~   93 (259)
                      .+|.++|++ +...++++|++..-.||.-.-+   .++|+++|+++++|.++...    ...+-+ .....++.+|.+|.
T Consensus       284 ~IDyd~lek~a~~~rPKLII~g~Saypr~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP-~~~aDvvt~TTHKt  362 (586)
T PLN02271        284 YIDYDKLEEKALDFRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNP-FDYCDIVTSTTHKS  362 (586)
T ss_pred             ccCHHHHHHHhhhcCCeEEEECchhccCcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCC-CcCCcEEEeCCccc
Confidence            478888998 4477999988877678844434   38999999999999998311    111111 22358999999999


Q ss_pred             c-CCCcceEEEEEecCH-------------------HHHHHHHHhhhhhcCCCCHHHH-HHHHHHHHHHHhcCCcchHHH
Q 024997           94 T-GHAGSRFGWAVIKDE-------------------AVYQRMSAYISLNTMGVSRECQ-LRAFKLLKVVLEDGGNNIFEF  152 (259)
Q Consensus        94 ~-g~~G~R~G~i~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~  152 (259)
                      + |..|   |.|...+.                   ++.+++....-+...+.+.... ++.+..+...    ....+.+
T Consensus       363 LrGPrG---G~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea----~~~efk~  435 (586)
T PLN02271        363 LRGPRG---GIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQV----ATPEYKA  435 (586)
T ss_pred             CCCCCc---eEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHH----hChHHHH
Confidence            8 4455   88887621                   2444444433333333333222 2223333422    2223467


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCC-CCCeeEEEecCCC--chHHHHHHHHHcCeee----ecCC
Q 024997          153 GYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP-PSPAYAWVKCERE--EDKDCYGILKAAKIIG----REGK  225 (259)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~----~~g~  225 (259)
                      ..+++.+|.+.|.+.|.+.+              ++.+.. ...=.+++++...  +...+.+.|++.||.+    .|+.
T Consensus       436 Ya~QVv~NAkaLA~~L~~~G--------------~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d  501 (586)
T PLN02271        436 YMQQVKKNAQALASALLRRK--------------CRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGD  501 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHCC--------------CeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCC
Confidence            78889999999999998765              222221 1122567777654  5788999999999976    3433


Q ss_pred             cccCCCCeEEEEe------ecChhhHHHHHHHHHHHhh
Q 024997          226 KFRAEARFVRLSL------LKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       226 ~f~~~~~~~Ris~------~~~~~~~~~~~~~l~~~l~  257 (259)
                      .-...++.+||+.      +..+++++++.+-|.++++
T Consensus       502 ~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~  539 (586)
T PLN02271        502 NGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ  539 (586)
T ss_pred             CCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence            1112357899997      2256777777777766654

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.97  E-value=4.8e-08  Score=86.92  Aligned_cols=182  Identities=16%  Similarity=0.114  Sum_probs=107.6

Q ss_pred             HhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHH
Q 024997           54 AVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSREC  130 (259)
Q Consensus        54 ~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (259)
                      ++|+++|+++|.||++  |+.....+. ...+..--+-+++|.++ .|+.+|.++.. +++ +.+.......+++.+++.
T Consensus       253 ~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK~l~-gG~Pi~av~~~-~~~-~~~~~~~~~~T~~gnpla  329 (459)
T PRK06931        253 EVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVG-GGLPLAVLGIK-KEF-DAWQPGGHTGTFRGNQLA  329 (459)
T ss_pred             HHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEeccccc-CCcceeeeeeH-HHH-hhccCCCCCCCCCCCHHH
Confidence            8999999999999998  522111111 01111111667799998 78999998877 464 655444455678889999


Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-----
Q 024997          131 QLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-----  205 (259)
Q Consensus       131 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  205 (259)
                      .+++.+.|+.+.+   ++.    .++.++.-+++.+.|+++..    ..+     .+..+... |.+.-+.+...     
T Consensus       330 ~aaala~L~~l~~---~~l----~~~~~~~G~~l~~~L~~l~~----~~~-----~i~~vrG~-Glm~giel~~~~~~~~  392 (459)
T PRK06931        330 MATGLTTLKILKE---ENL----AQNAAERGEWLKAQLAELQK----RYP-----CIGNVRGR-GLMIGIEIVDERQPAD  392 (459)
T ss_pred             HHHHHHHHHHHHh---CCH----HHHHHHHHHHHHHHHHHHHH----hCC-----CeEeEecC-ceEEEEEEccCccccc
Confidence            8988888886522   223    34444444455555544320    000     02222333 23333333110     


Q ss_pred             -------c---hHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          206 -------E---DKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       206 -------~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                             +   ...+...+.++|+.+.+...   ..+.+|+...  .++++++++++++.+.+++
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~---~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~  454 (459)
T PRK06931        393 AMGSYPADGELAAAIQKACFENGLLLERGGR---NGNVVRLLPPLLITQAECEEFIDRFEQALLA  454 (459)
T ss_pred             ccccCCccHHHHHHHHHHHHHCCcEEeecCC---CCCEEEEECCCCcCHHHHHHHHHHHHHHHHH
Confidence                   1   12233444578999876321   2377898864  3999999999999988763

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=98.96  E-value=1.8e-07  Score=81.80  Aligned_cols=215  Identities=10%  Similarity=0.054  Sum_probs=136.2

Q ss_pred             ccccChhhhcccCCC----CceEEEEcCCCCCCh-hhH--------HHhhcCCCcEEEeecccc-CCCC------CCCCC
Q 024997           20 KFEGEANLWGNASSD----THLVEFVTAPNNPDG-QMN--------KAVLKGPYAKSIYDHAYF-WPHF------APIPA   79 (259)
Q Consensus        20 ~~~~d~~~l~~~~~~----~~~~i~i~~p~NPtG-~~~--------~~la~~~~~~vi~De~y~-~~~~------~~~~~   79 (259)
                      ++.+|++.|++.+++    ++.++.+.+++|..| ...        .++|+++|+.||+|.+.+ +...      ....+
T Consensus       158 tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~  237 (460)
T PRK13237        158 KGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQD  237 (460)
T ss_pred             CCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCC
Confidence            467899999999853    345678888889885 332        389999999999998762 2110      11111


Q ss_pred             ----------CCCCeEEEeccccccCCC-cceEEEEEecCHHHHHHHHHhhhhh----cC-CCCHHHHHHHHHHHHHHHh
Q 024997           80 ----------PADEELMIFTISKLTGHA-GSRFGWAVIKDEAVYQRMSAYISLN----TM-GVSRECQLRAFKLLKVVLE  143 (259)
Q Consensus        80 ----------~~~~~i~~~S~SK~~g~~-G~R~G~i~~~~~~~~~~~~~~~~~~----~~-~~~~~~q~~~~~~l~~~~~  143 (259)
                                ..--+..+.|++|.++.+ |   |+++..|+++.++++...-..    +. +.+.-...+++..+.+.  
T Consensus       238 ~~i~ei~~e~~s~aD~~t~S~~K~~~~~~G---G~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~--  312 (460)
T PRK13237        238 KSIKEIVHEMFSYADGCTMSGKKDCLVNIG---GFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEES--  312 (460)
T ss_pred             CcHhHHhhhccCcCcEEEEeCCCCCCCCCc---eEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhh--
Confidence                      123477888999998755 5   999999899999988764221    22 22222333343344431  


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC----------chHHHHHH
Q 024997          144 DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE----------EDKDCYGI  213 (259)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l  213 (259)
                       -..    ...+..-.+.+.|.+.|.+.+              +++..|.+|--++++....          ...++..+
T Consensus       313 -~~~----~y~~~ri~~~~~l~~~L~~~G--------------vpv~~p~ggH~v~vda~~~lph~~~~~~p~~al~~~l  373 (460)
T PRK13237        313 -VQY----EYIEHRVGQVRYLGEKLLAAG--------------VPIVEPVGGHAVFLDARRFLPHLPQDQFPAQALAAEL  373 (460)
T ss_pred             -chH----HHHHHHHHHHHHHHHHHHHCC--------------CceecCCCceEEEEEhHHhCCCCCcccChHHHHHHHH
Confidence             111    223334446667777777655              5556777776667765432          35677778


Q ss_pred             HHHcCeeeec-CCcc-c----------CCCCeEEEEeec---ChhhHHHHHHHHHHHhhh
Q 024997          214 LKAAKIIGRE-GKKF-R----------AEARFVRLSLLK---SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       214 l~~~gi~~~~-g~~f-~----------~~~~~~Ris~~~---~~~~~~~~~~~l~~~l~~  258 (259)
                      ..+.||-..- |+.. +          ++-..+|+++-+   +.+.++...+++..+.++
T Consensus       374 y~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~  433 (460)
T PRK13237        374 YIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH  433 (460)
T ss_pred             HHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence            7788885432 2211 1          113579999954   889999999999887653

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=98.96  E-value=4.5e-08  Score=86.57  Aligned_cols=205  Identities=9%  Similarity=0.067  Sum_probs=113.2

Q ss_pred             ChhhhcccCC---CCceEEEEcCCC---CCChhhH---HHhhcCCCcEEEeeccc--cCCCCCCCCCCCCCeEEEecccc
Q 024997           24 EANLWGNASS---DTHLVEFVTAPN---NPDGQMN---KAVLKGPYAKSIYDHAY--FWPHFAPIPAPADEELMIFTISK   92 (259)
Q Consensus        24 d~~~l~~~~~---~~~~~i~i~~p~---NPtG~~~---~~la~~~~~~vi~De~y--~~~~~~~~~~~~~~~i~~~S~SK   92 (259)
                      |++.|++.+.   ++..+ ++..|-   .|+-..+   .++|+++|+++|+||++  |...........+-.--+.+++|
T Consensus       173 d~~~l~~~l~~~~~~~aa-vi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~~~~gv~PDi~t~gK  251 (431)
T PRK06209        173 DIASLEALFEDHPGRIAC-VILEPATADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQKLYGIVPDLSCFGK  251 (431)
T ss_pred             CHHHHHHHHHhCCCCEEE-EEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhhHHhCCCcceeeehh
Confidence            6777887763   24455 555553   2332223   38999999999999998  31111001000011112588999


Q ss_pred             ccCCCcceEEEEEecCHHHHHH--HHH------hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 024997           93 LTGHAGSRFGWAVIKDEAVYQR--MSA------YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENL  164 (259)
Q Consensus        93 ~~g~~G~R~G~i~~~~~~~~~~--~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (259)
                      .+| .|+.+|+++++ +++.+.  +..      .....+.+++++.-+++.+.++...   .++.    .++++++-+++
T Consensus       252 ~lg-gG~p~~av~~~-~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~---~~~~----~~~~~~~g~~l  322 (431)
T PRK06209        252 ALG-NGFAVSALAGK-REYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYR---DEDV----IERLHEQGAKL  322 (431)
T ss_pred             hhc-CCcccEEEEEH-HHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHh---ccCH----HHHHHHHHHHH
Confidence            998 68889999999 698886  311      1123456677777777777777542   2233    44555555555


Q ss_pred             HHHHHhcCCCccccccccccccceeeCCCCCeeEEEec--C---CCch---HHHHHHHHHcCeeeecCCcccCCCCeEEE
Q 024997          165 SKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKC--E---REED---KDCYGILKAAKIIGREGKKFRAEARFVRL  236 (259)
Q Consensus       165 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~---~~~~~ll~~~gi~~~~g~~f~~~~~~~Ri  236 (259)
                      .+.|+++..    .++   .  .......+.+....-+  .   ..+.   ..+...+.++||.+.|          ++|
T Consensus       323 ~~~L~~~~~----~~~---~--~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~----------l~i  383 (431)
T PRK06209        323 AAGVNEAAA----EHG---L--QDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLMPS----------LVV  383 (431)
T ss_pred             HHHHHHHHH----hCC---C--CeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCccccc----------ccc
Confidence            555544210    000   0  1111112222111111  1   1111   1233334467997621          577


Q ss_pred             EeecChhhHHHHHHHHHHHhh
Q 024997          237 SLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       237 s~~~~~~~~~~~~~~l~~~l~  257 (259)
                      +..+++++++++++++.+.++
T Consensus       384 s~~ht~~dId~~l~~l~~~l~  404 (431)
T PRK06209        384 SYAHGDADIERTIDAVHGALG  404 (431)
T ss_pred             cccCCHHHHHHHHHHHHHHHH
Confidence            766699999999999998875

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.96  E-value=5e-08  Score=86.95  Aligned_cols=202  Identities=12%  Similarity=0.087  Sum_probs=122.5

Q ss_pred             hhhcccCC---CCceEEEEcCC--CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----C-CCCCe
Q 024997           26 NLWGNASS---DTHLVEFVTAP--NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----A-PADEE   84 (259)
Q Consensus        26 ~~l~~~~~---~~~~~i~i~~p--~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~-~~~~~   84 (259)
                      +.+++.+.   ++..+ +|..|  +.-.|.+.         .++|+++|+++|.||++  |+.....+.    + .+|  
T Consensus       202 ~~le~~~~~~~~~iAA-vi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PD--  278 (466)
T PRK07030        202 AHMEQTLAEHHDEIAA-VIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPD--  278 (466)
T ss_pred             HHHHHHHHhCCCceEE-EEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCC--
Confidence            34555552   35566 55555  33334433         38999999999999998  532111111    1 222  


Q ss_pred             EEEeccccccCCCc-ceEEEEEecCHHHHHHHHH-------hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Q 024997           85 LMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSA-------YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNT  156 (259)
Q Consensus        85 i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  156 (259)
                        +-+++|.++ .| +.+|.+++. +++.+.+..       .....+++.+++..+++.+.|+...+   ++    ..++
T Consensus       279 --iv~~gKgl~-gG~~Pi~av~~~-~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~---~~----l~~~  347 (466)
T PRK07030        279 --FLCLSKALT-GGYLPLAAVLTT-DTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQ---DN----VIEN  347 (466)
T ss_pred             --EEeeehhcc-CCcccceEEEec-HHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh---cC----HHHH
Confidence              556699998 78 599999999 699888752       23445678899998888888886522   22    2445


Q ss_pred             HHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---------c---hHHHHHHHHHcCeeeecC
Q 024997          157 MKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---------E---DKDCYGILKAAKIIGREG  224 (259)
Q Consensus       157 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~ll~~~gi~~~~g  224 (259)
                      .++.-+++.+.|+++...     +     .+..+... |...-+.+...         +   ...+...+.++|+.+.+.
T Consensus       348 ~~~~G~~l~~~L~~l~~~-----~-----~v~~vrG~-Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~  416 (466)
T PRK07030        348 NRALARRMAEATAHLADH-----P-----HVAEVRQT-GMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPL  416 (466)
T ss_pred             HHHHHHHHHHHHHHHhcC-----C-----CEEEeEec-eeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEec
Confidence            555555555555544211     0     02222333 33334443210         0   123444455789999762


Q ss_pred             CcccCCCCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          225 KKFRAEARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       225 ~~f~~~~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                           + +.+|+...  .++++++++++++.+.+++
T Consensus       417 -----g-~~i~~~Ppl~it~~eid~~~~~l~~al~~  446 (466)
T PRK07030        417 -----G-SVVYFLPPYVITPEQIDFLAEVASEGIDI  446 (466)
T ss_pred             -----C-CEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence                 2 57888743  4999999999999998864

>PRK02769 histidine decarboxylase; Provisional

Probab=98.96  E-value=1.2e-07  Score=82.38  Aligned_cols=202  Identities=13%  Similarity=0.110  Sum_probs=125.7

Q ss_pred             cccChhhhcccCCCC---ceEEEEcCCCCCChhhH-----HHhhcCCC---cEEEeeccccC---C---CCCCCCCCCCC
Q 024997           21 FEGEANLWGNASSDT---HLVEFVTAPNNPDGQMN-----KAVLKGPY---AKSIYDHAYFW---P---HFAPIPAPADE   83 (259)
Q Consensus        21 ~~~d~~~l~~~~~~~---~~~i~i~~p~NPtG~~~-----~~la~~~~---~~vi~De~y~~---~---~~~~~~~~~~~   83 (259)
                      ..+|+++|++.+++.   +.+|+++.++|+||.+.     .++|+++|   +++.+|.+|-+   +   ....+....+.
T Consensus       143 g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~v  222 (380)
T PRK02769        143 GEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGI  222 (380)
T ss_pred             CcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCC
Confidence            468899999988554   88999999999999998     38899998   79999999821   1   11122212256


Q ss_pred             eEEEeccccccC-CCcceEEEEEecCHHHHHHHHHhhh------hhcCCC-CHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q 024997           84 ELMIFTISKLTG-HAGSRFGWAVIKDEAVYQRMSAYIS------LNTMGV-SRECQLRAFKLLKVVLEDGGNNIFEFGYN  155 (259)
Q Consensus        84 ~i~~~S~SK~~g-~~G~R~G~i~~~~~~~~~~~~~~~~------~~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~  155 (259)
                      +.+..|.+|.++ ..|  +|+++.. ++..+.+.....      ....|. +.....+.-..++..    ...-+.+..+
T Consensus       223 Dsis~s~HK~~~~P~g--~G~l~~r-~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~l----g~~G~~~~~~  295 (380)
T PRK02769        223 DSIAISGHKFIGSPMP--CGIVLAK-KKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSL----GSKGLRQRVQ  295 (380)
T ss_pred             CEEEECCcccCCCCCC--cEEEEEe-hhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHH----CHHHHHHHHH
Confidence            788999999987 455  8999988 466665432111      000111 122223333334432    2234666778


Q ss_pred             HHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEE
Q 024997          156 TMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVR  235 (259)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~R  235 (259)
                      +..+..+++.+.|+..+              +.....+....+.+..+  +.+    +.  .|..+.+-      ++.+|
T Consensus       296 ~~~~la~~l~~~L~~~g--------------~~~~~~p~~~~v~f~~~--~~~----~~--~~w~l~~~------~~~~h  347 (380)
T PRK02769        296 HCLDMAQYAVDRLQANG--------------IPAWRNPNSITVVFPCP--SER----IW--KKWHLATS------GNQAH  347 (380)
T ss_pred             HHHHHHHHHHHHHHhCC--------------CEEEcCCCceEEEEcCC--CHH----HH--hCeeEccc------CCEEE
Confidence            88888888888887643              22223333344444333  222    12  35555431      25899


Q ss_pred             EEeec--ChhhHHHHHHHHHHHhh
Q 024997          236 LSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       236 is~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      +.+..  +.+.++..++-|.+.+.
T Consensus       348 i~~~~~~~~~~~~~f~~dl~~~~~  371 (380)
T PRK02769        348 IITMPHHNKQQIDSLIDELIFDLK  371 (380)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHh
Confidence            99976  77788888888876543

>PRK06148 hypothetical protein; Provisional

Probab=98.95  E-value=8.4e-08  Score=92.87  Aligned_cols=183  Identities=14%  Similarity=0.102  Sum_probs=114.4

Q ss_pred             HhhcCCCcEEEeeccc--cCCCCC-CCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhh-hhhcCCCCH
Q 024997           54 AVLKGPYAKSIYDHAY--FWPHFA-PIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI-SLNTMGVSR  128 (259)
Q Consensus        54 ~la~~~~~~vi~De~y--~~~~~~-~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~-~~~~~~~~~  128 (259)
                      ++|+++|+++|.||++  |+.-.. -+. ...+..--+-+++|.+| .|+.+|.+++. +++.+.+..-. ...+++.++
T Consensus       812 ~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lg-gG~Plgav~~~-~ei~~~~~~g~~~~~Tf~gnp  889 (1013)
T PRK06148        812 AMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIG-NGHPMGAVVTT-REIADSFDNGMEYFNTFGGNP  889 (1013)
T ss_pred             HHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeeccccc-CCcceEEEEEc-HHHHhhccCCCccccCCCCCH
Confidence            8999999999999998  532221 111 11111222678899998 79999999999 79998875421 346788899


Q ss_pred             HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC----
Q 024997          129 ECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER----  204 (259)
Q Consensus       129 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  204 (259)
                      +.-+++.+.|+...   .++.    .+..++.-+++.+.|+++..    ..+     .+..+... |.++-+.+..    
T Consensus       890 la~aaa~a~L~~i~---~e~l----~~~~~~~G~~l~~~L~~l~~----~~~-----~i~~VrG~-Gl~~gvel~~~~~~  952 (1013)
T PRK06148        890 VSCAIGLAVLDIIE---DEDL----QRNALEIGNYLLAGLRELQD----RFD-----IIGDVRGM-GLFLGIELVTDRKT  952 (1013)
T ss_pred             HHHHHHHHHHHHHh---hccH----HHHHHHHHHHHHHHHHHHHH----hCC-----CceEEeee-ceEEEEEecCCccc
Confidence            99898888888652   2232    44455555555555554321    000     02222323 3333344321    


Q ss_pred             --Cc---hHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          205 --EE---DKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       205 --~~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                        .+   ...+...+.++||.+.+.   +...+.+||...  .+++++++++++|.+++++
T Consensus       953 ~~~~~~~~~~i~~~~~~~Gvl~~~~---g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~ 1010 (1013)
T PRK06148        953 KAPATAIARYVKNGARERGILIGTE---GPHDNVLKIRPPLIFSRADADHLLEVLDDVLAA 1010 (1013)
T ss_pred             cCccHHHHHHHHHHHHhCCeEEecc---CCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence              11   223444455789999762   222478888874  4999999999999998864

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.95  E-value=5.5e-08  Score=86.61  Aligned_cols=202  Identities=12%  Similarity=0.088  Sum_probs=122.8

Q ss_pred             hhhcccCC---CCceEEEEcCC--CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----C-CCCCe
Q 024997           26 NLWGNASS---DTHLVEFVTAP--NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----A-PADEE   84 (259)
Q Consensus        26 ~~l~~~~~---~~~~~i~i~~p--~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~-~~~~~   84 (259)
                      +.+++.+.   ++..+ ++..|  +.-.|.+.         .++|+++|+++|.||++  |+.....+.    + .+|  
T Consensus       211 ~~l~~~l~~~~~~iAA-vi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PD--  287 (460)
T PRK06916        211 EELEELLKEKHEEIAA-IIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPD--  287 (460)
T ss_pred             HHHHHHHHhCCCcEEE-EEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCC--
Confidence            44555552   45666 44445  44445443         28999999999999998  422111111    1 222  


Q ss_pred             EEEeccccccCCCc-ceEEEEEecCHHHHHHHHH-------hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Q 024997           85 LMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSA-------YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNT  156 (259)
Q Consensus        85 i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  156 (259)
                        +-+++|.++ .| +.+|.+++. +++.+.+..       .....+++.+++..+++.+.|+.+.+   ++    ..++
T Consensus       288 --iv~~gK~l~-gG~~Pi~av~~~-~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~---~~----l~~~  356 (460)
T PRK06916        288 --IMTAGKGLT-GGYLPIAITVTT-DEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEK---TN----LIEQ  356 (460)
T ss_pred             --eeeeehhhh-cCccccceeeec-HHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHh---cc----HHHH
Confidence              447899997 78 589999999 699887642       22344677789888888888875421   22    3455


Q ss_pred             HHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---------c---hHHHHHHHHHcCeeeecC
Q 024997          157 MKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---------E---DKDCYGILKAAKIIGREG  224 (259)
Q Consensus       157 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~ll~~~gi~~~~g  224 (259)
                      +++.-+++.+.|+++....          .+..+...|.+ .-+.+...         +   ...+...+.++||.+.+.
T Consensus       357 ~~~~g~~l~~~l~~l~~~~----------~v~~vrG~Glm-~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~  425 (460)
T PRK06916        357 VARKTEYVATQLEDLFALK----------HVGDIRQLGLM-VGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPL  425 (460)
T ss_pred             HHHHHHHHHHHHHHhhcCC----------CeEEeecCCce-eeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEec
Confidence            6666666666666543210          02223333332 22322110         0   123444455789999772


Q ss_pred             CcccCCCCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          225 KKFRAEARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       225 ~~f~~~~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                           + +.+|+...  .++++++++++++.+.+++
T Consensus       426 -----g-~~l~~~Ppl~it~~~id~~~~~l~~~l~~  455 (460)
T PRK06916        426 -----G-NTIVFMPPLASTIDELDEMLRILYKAISD  455 (460)
T ss_pred             -----C-CEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence                 2 57888743  4999999999999998763

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=98.94  E-value=2.3e-08  Score=86.26  Aligned_cols=193  Identities=15%  Similarity=0.078  Sum_probs=119.4

Q ss_pred             ChhhhcccCCCCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cC-CCCCCCC--C-CCCCeEEEe
Q 024997           24 EANLWGNASSDTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FW-PHFAPIP--A-PADEELMIF   88 (259)
Q Consensus        24 d~~~l~~~~~~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~-~~~~~~~--~-~~~~~i~~~   88 (259)
                      |.+.+++.+.++++++++...+.-.|...         .++|+++|+++|+||++  |. .......  + .+|    +-
T Consensus       151 d~~~l~~~i~~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~gv~PD----iv  226 (364)
T PRK04013        151 DVEAAKEAITKETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPD----IV  226 (364)
T ss_pred             CHHHHHHHhcCCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhcCCCCC----EE
Confidence            56778888877888866665453223222         38899999999999998  31 0111110  1 222    56


Q ss_pred             ccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 024997           89 TISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKII  168 (259)
Q Consensus        89 S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (259)
                      +++|.+| .|+.+|.++.. .++.    ......+++.+++.-+++.+.|+...+   ++.+++..+.       + ..+
T Consensus       227 ~~gK~lg-gG~P~~a~~~~-~~~~----~~~~~~T~~gnp~~~aaa~a~l~~i~~---~~l~~~~~~~-------l-~~l  289 (364)
T PRK04013        227 TMGKGIG-NGVPVSLTLTN-FDVE----RGKHGSTFGGNPLACKAVAVTLRILRR---ERLVEKAGEK-------F-IEI  289 (364)
T ss_pred             Eeccccc-CCceeEEEEec-cccc----CCCcCCCCCcCHHHHHHHHHHHHHHHh---ccHHHHHHHH-------H-HHh
Confidence            6799998 68999999988 3652    223456788999999999888886522   2332222221       1 111


Q ss_pred             HhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHH
Q 024997          169 SLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFD  246 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~  246 (259)
                      .. +             .+..+... |.++-+.+... ...+...+.++|+.+.+     .+.+.+|+...-  ++++++
T Consensus       290 ~~-~-------------~v~~vRG~-Gl~~gve~~~~-~~~i~~~~~~~Gll~~~-----~g~~vlr~~Ppl~it~~~i~  348 (364)
T PRK04013        290 KG-E-------------RVVTTRGR-GLMIGIVLKKP-VGKYVEELQNRGYLVHT-----AGQRVIRLLPPLIISKDTME  348 (364)
T ss_pred             cc-C-------------cceeeeeC-cEEEEEEeCCc-HHHHHHHHHhCCcEEee-----CCCCEEEEeCCcccCHHHHH
Confidence            11 1             02222333 45555555432 23344445568999876     234789999743  999999


Q ss_pred             HHHHHHHHHhhh
Q 024997          247 LLLHRLDELISK  258 (259)
Q Consensus       247 ~~~~~l~~~l~~  258 (259)
                      +++++|.+.+.+
T Consensus       349 ~~~~~l~~~l~~  360 (364)
T PRK04013        349 EAKSAIEGVIND  360 (364)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=98.94  E-value=1.4e-07  Score=83.52  Aligned_cols=235  Identities=14%  Similarity=0.064  Sum_probs=132.1

Q ss_pred             hhhccCcccccc----cChhhhcccCCCCceEEEEcCCCCCC--hh--hH-----HHhhcCCCcEEEeeccc--cCC---
Q 024997           11 TDYFESVDYKFE----GEANLWGNASSDTHLVEFVTAPNNPD--GQ--MN-----KAVLKGPYAKSIYDHAY--FWP---   72 (259)
Q Consensus        11 ~~~~g~~~~~~~----~d~~~l~~~~~~~~~~i~i~~p~NPt--G~--~~-----~~la~~~~~~vi~De~y--~~~---   72 (259)
                      .+..|.+...++    .++++++++++++++++++.+++||+  |.  +.     .++|+++|+++++|.+.  +.+   
T Consensus       183 ~~~~G~~~~~v~~~~~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~  262 (454)
T TIGR00474       183 MEQSGAKLVEVGTTNRTHLKDYEDAITENTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSR  262 (454)
T ss_pred             HHHcCCEEEEeCCCCCCCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchh
Confidence            344566553332    45678999999999999999999995  63  32     48999999999999863  111   


Q ss_pred             ---CCCCCC---CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhc--
Q 024997           73 ---HFAPIP---APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLED--  144 (259)
Q Consensus        73 ---~~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~--  144 (259)
                         ...+..   ...+.+++++|.+|.+|.+  ..|++++. ++++++++.....-...+......+....+...++.  
T Consensus       263 ~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp--~~G~i~g~-~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~  339 (454)
T TIGR00474       263 YGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP--QAGIIVGK-KELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEK  339 (454)
T ss_pred             ccCCCCcccccHhHcCCCEEEecCccccCCC--eEEEEEEC-HHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchh
Confidence               011111   1345679999999998645  47999999 688877654322111122222222222222221111  


Q ss_pred             -----CCcchHHHHHHHHHHHHHHHHHHHHhc--CCCccccccccccccceeeCCC--CCeeEEEecCCCchHHHHHHHH
Q 024997          145 -----GGNNIFEFGYNTMKKRWENLSKIISLS--NRFSLQEIAPQYCTYFKKIRPP--SPAYAWVKCEREEDKDCYGILK  215 (259)
Q Consensus       145 -----~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ll~  215 (259)
                           ..-+.+....++++++...+.+.|+..  +++.....+....-.-...+..  -.+-+.++....+.+.+.+.|+
T Consensus       340 a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~~~~~~l~~~lr  419 (454)
T TIGR00474       340 ALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPDGLSAEKLEARLR  419 (454)
T ss_pred             hhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecCCCCHHHHHHHHh
Confidence                 011234455667888899999999874  3222222111100000000111  1223333333345677777787


Q ss_pred             HcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHH
Q 024997          216 AAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRL  252 (259)
Q Consensus       216 ~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l  252 (259)
                      +....+..    ....+.+.+-+-. .+++++..++++
T Consensus       420 ~~~~~ii~----r~~~~~~~ld~r~~~~~~~~~~~~~~  453 (454)
T TIGR00474       420 ELPPPIIG----RIEDDRFLLDLRTLLEDEEELLIEAL  453 (454)
T ss_pred             cCCCCEEE----EEECCEEEEEeCcCCHHHHHHHHHHh
Confidence            76644332    1235677777744 778888877765

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK07036 hypothetical protein; Provisional

Probab=98.93  E-value=1e-07  Score=85.02  Aligned_cols=194  Identities=14%  Similarity=0.116  Sum_probs=119.4

Q ss_pred             CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCC--CCCC---C-CCCCeEEEeccccccCC
Q 024997           34 DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHF--APIP---A-PADEELMIFTISKLTGH   96 (259)
Q Consensus        34 ~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~--~~~~---~-~~~~~i~~~S~SK~~g~   96 (259)
                      ++..++++.....-.|.+.         .++|+++|+++|.||++  |+...  ....   + .+|    +-+++|.++ 
T Consensus       219 ~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PD----ivt~gK~l~-  293 (466)
T PRK07036        219 DNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPD----IITFAKGLT-  293 (466)
T ss_pred             CceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCC----EEEEccccc-
Confidence            3566644444343334443         28999999999999998  53211  1111   1 222    567899997 


Q ss_pred             Cc-ceEEEEEecCHHHHHHHHH-------hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 024997           97 AG-SRFGWAVIKDEAVYQRMSA-------YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKII  168 (259)
Q Consensus        97 ~G-~R~G~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (259)
                      .| +.+|.+++. +++.+.+..       +....+++.+++..+++.+.|+...+   ++    ..+..++.-+++.+.|
T Consensus       294 gG~~Pi~av~~~-~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~---~~----l~~~~~~~g~~l~~~L  365 (466)
T PRK07036        294 SGYQPLGAVIIS-ERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMER---EG----LCEHVREVGPYFEERL  365 (466)
T ss_pred             cCccccEEEEEc-HHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHh---CC----HHHHHHHHHHHHHHHH
Confidence            78 589999999 699888753       12334677899998888888886421   22    3455666666666666


Q ss_pred             HhcCCCccccccccccccceeeCCCCCeeEEEecCCC---------c---hHHHHHHHHHcCeeeecCCcccCCCCeEEE
Q 024997          169 SLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---------E---DKDCYGILKAAKIIGREGKKFRAEARFVRL  236 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ri  236 (259)
                      +.+....          .+..+... |....+.+...         +   ...+...+.++||.+.+.     + +.+|+
T Consensus       366 ~~l~~~~----------~v~~vrG~-Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~-----~-~~~~l  428 (466)
T PRK07036        366 ASLRELP----------LVGDVRGD-HLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPL-----E-HLCVL  428 (466)
T ss_pred             HHhccCC----------CEEEEEee-ceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeec-----C-CEEEE
Confidence            5432110          12223333 33334444210         1   123444455789998762     2 56888


Q ss_pred             Eee--cChhhHHHHHHHHHHHhh
Q 024997          237 SLL--KSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       237 s~~--~~~~~~~~~~~~l~~~l~  257 (259)
                      +..  .++++++++++++.+.++
T Consensus       429 ~Ppl~it~~~id~~~~~l~~al~  451 (466)
T PRK07036        429 SPPLIITRAQIDEIVAILRAAIE  451 (466)
T ss_pred             eCCCcCCHHHHHHHHHHHHHHHH
Confidence            854  399999999999988775

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.93  E-value=4.2e-07  Score=77.87  Aligned_cols=223  Identities=13%  Similarity=0.076  Sum_probs=131.4

Q ss_pred             hhhhccCcc-------cccccChhhhcccCCCCceEEEEcCC-CCCChhhH--HHhhcCCCcEEEeeccc-cC-----CC
Q 024997           10 QTDYFESVD-------YKFEGEANLWGNASSDTHLVEFVTAP-NNPDGQMN--KAVLKGPYAKSIYDHAY-FW-----PH   73 (259)
Q Consensus        10 ~~~~~g~~~-------~~~~~d~~~l~~~~~~~~~~i~i~~p-~NPtG~~~--~~la~~~~~~vi~De~y-~~-----~~   73 (259)
                      .....|+++       +.|.+|++.+++.+++++|+|+..+- .||. .+-  .++|++||++||+|-++ ++     ..
T Consensus        90 ~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl~G~~~-dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~  168 (374)
T COG0399          90 AVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHLAGQPC-DMDAIMALAKRHGLPVIEDAAQAHGATYKGKK  168 (374)
T ss_pred             HHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEehhccCCC-CHHHHHHHHHHcCCeEEEEcchhccCeecCcc
Confidence            334456665       34778899999999999999888875 4666 222  49999999999999987 32     12


Q ss_pred             CCCCCCCCCCeEEEecc--ccccCCCcceEEEEEecCHHHHHHHHHhhhhhc----------------CCCCHHHHHHHH
Q 024997           74 FAPIPAPADEELMIFTI--SKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNT----------------MGVSRECQLRAF  135 (259)
Q Consensus        74 ~~~~~~~~~~~i~~~S~--SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~----------------~~~~~~~q~~~~  135 (259)
                      ..++   .  .+-+.||  +|.++ +| --|.++.+|+++.++++.++....                ...+.++.+++.
T Consensus       169 vGt~---G--d~~~fSF~~~K~it-tg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl  241 (374)
T COG0399         169 VGSF---G--DIGAFSFHATKNLT-TG-EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGL  241 (374)
T ss_pred             cccc---c--ceEEEEecCCCCcc-cc-CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHH
Confidence            2222   1  3444454  48886 44 459999999999998877654322                223445555555


Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEE-EecCC--CchHHHHH
Q 024997          136 KLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAW-VKCER--EEDKDCYG  212 (259)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~  212 (259)
                      .-|+.         ++++.++=++..+...+.|++++++.+...+.         .....++++ +.++.  .+.+.+..
T Consensus       242 ~QL~~---------l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~---------~~~~~~~~~~i~~~~~~~~R~~l~~  303 (374)
T COG0399         242 AQLER---------LDEINERRREIAQIYAEALKGLPGITLPPEPD---------GAVHAWHLYTILVDEEGISRDALME  303 (374)
T ss_pred             HHHHH---------HHHHHHHHHHHHHHHHHHhhcCCCccccCCCC---------CceeeeeeeEEEecCCCCCHHHHHH
Confidence            55552         22233333444455555666555422221111         111223222 22332  24577888


Q ss_pred             HHHHcCee----eecCCccc-------------C-----CCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          213 ILKAAKII----GREGKKFR-------------A-----EARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       213 ll~~~gi~----~~~g~~f~-------------~-----~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      .|++.||.    .+|.....             +     ....++|=+-.  +++++++.++.|++++++
T Consensus       304 ~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~  373 (374)
T COG0399         304 SLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS  373 (374)
T ss_pred             HHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence            88888554    44422110             0     12345555433  889999999999998864

>PRK06149 hypothetical protein; Provisional

Probab=98.93  E-value=9.4e-08  Score=92.38  Aligned_cols=180  Identities=13%  Similarity=0.131  Sum_probs=111.7

Q ss_pred             HhhcCCCcEEEeeccc--cCCCC---CCCC--CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhh-hhhcCC
Q 024997           54 AVLKGPYAKSIYDHAY--FWPHF---APIP--APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI-SLNTMG  125 (259)
Q Consensus        54 ~la~~~~~~vi~De~y--~~~~~---~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~-~~~~~~  125 (259)
                      ++|+++|+++|+||++  |+.-.   ..+.  +.. .+  +-+++|.+| .|+.+|.+++. +++.+.+.... ...+.+
T Consensus       772 ~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~-PD--ivt~gK~lg-~G~Pl~av~~~-~~i~~~~~~~~~~~sT~~  846 (972)
T PRK06149        772 AAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVV-PD--IITMAKGMG-NGHPLGAVITR-REIAEALEAEGYFFSSTG  846 (972)
T ss_pred             HHHHHcCCEEEEEeehhcCCccCccchhhhhcCCC-CC--EEEeccccc-CCeeeEEEEEc-HHHHhhhccCCcccCCCC
Confidence            8999999999999998  53221   1111  111 12  338899998 78999999999 69998876411 123467


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-
Q 024997          126 VSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-  204 (259)
Q Consensus       126 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  204 (259)
                      .+++.-+++.+.|+...+   ++    ..+..++.-+++.+.|+++..    ..+     .+..+... |.++-+.+.. 
T Consensus       847 gnP~~~aaala~L~~i~~---e~----l~~~~~~~G~~l~~~L~~l~~----~~~-----~i~~vrG~-Gl~~gvel~~~  909 (972)
T PRK06149        847 GSPVSCRIGMAVLDVLRE---EK----LQENARRVGDHLKARLEALAD----RHP-----LIGAVHGM-GLYLGVELVRD  909 (972)
T ss_pred             CCHHHHHHHHHHHHHHHh---cC----HHHHHHHHHHHHHHHHHHHHH----hCC-----CeEEEeec-ceEEEEEEecC
Confidence            889988988888886421   22    233444444555555554321    000     02223333 3344444321 


Q ss_pred             -----Cc---hHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          205 -----EE---DKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       205 -----~~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                           .+   ...+...+.++||.+.+.   +...+.+||...  .++++++++++++.+++++
T Consensus       910 ~~~~~~~~~~~~~i~~~l~~~Gvl~~~~---g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~  970 (972)
T PRK06149        910 RQTLEPATEETAAICDRLLELGVIMQPT---GDHLNILKIKPPLCLDRESADFFVDMLDRVLTE  970 (972)
T ss_pred             cccCCCChHHHHHHHHHHHhCCeEEeec---CCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence                 11   223444455689999872   322478998864  4999999999999999864

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=98.92  E-value=1.4e-07  Score=82.24  Aligned_cols=213  Identities=12%  Similarity=0.109  Sum_probs=134.3

Q ss_pred             cccChhhhcccCCC----CceEEEEcCCCCCC-hhhH--------HHhhcCCCcEEEeecccc-CC---------CCC--
Q 024997           21 FEGEANLWGNASSD----THLVEFVTAPNNPD-GQMN--------KAVLKGPYAKSIYDHAYF-WP---------HFA--   75 (259)
Q Consensus        21 ~~~d~~~l~~~~~~----~~~~i~i~~p~NPt-G~~~--------~~la~~~~~~vi~De~y~-~~---------~~~--   75 (259)
                      +.+|++.|++.+++    .++++.+.+++|-. |..+        .++|+++|+.|++|.+.+ ++         .+.  
T Consensus       152 GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~  231 (450)
T TIGR02618       152 GNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDK  231 (450)
T ss_pred             CCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCC
Confidence            46789999999854    34577888998865 6663        389999999999998762 11         111  


Q ss_pred             CCC----C-CCCCeEEEeccccccCCC-cceEEEEEecCHHHHHHHHHhhhhh----cCC-CCHHHHHHHHHHHHHHHhc
Q 024997           76 PIP----A-PADEELMIFTISKLTGHA-GSRFGWAVIKDEAVYQRMSAYISLN----TMG-VSRECQLRAFKLLKVVLED  144 (259)
Q Consensus        76 ~~~----~-~~~~~i~~~S~SK~~g~~-G~R~G~i~~~~~~~~~~~~~~~~~~----~~~-~~~~~q~~~~~~l~~~~~~  144 (259)
                      ++.    . ...-+.++.|..|.++.+ |   |+++..++++.+++++.....    +.+ .+.-...+++..|++    
T Consensus       232 ~i~ei~~e~~~~aD~~~~S~~Kd~~~~~G---G~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e----  304 (450)
T TIGR02618       232 SIAEILKEMMSYADGCTMSGKKDCLVNIG---GFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIRE----  304 (450)
T ss_pred             CHHHHHHHHhccCcEEEEeeccCCCCCCc---eEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHH----
Confidence            110    0 112355889999998766 6   788867789999988875332    111 122222333434443    


Q ss_pred             CCcchHHH-HHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC----------chHHHHHH
Q 024997          145 GGNNIFEF-GYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE----------EDKDCYGI  213 (259)
Q Consensus       145 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l  213 (259)
                          .+++ ....-..+.++|.+.|++.+              +.+..|.+|.-++++....          ...+...+
T Consensus       305 ----~~~~~y~~~r~~~a~~La~~L~~~G--------------vpv~~p~ggh~V~vda~~~lph~~~~~~p~~al~~~l  366 (450)
T TIGR02618       305 ----AVDYEYIEHRVKQVRYLGDKLKAAG--------------VPIVEPVGGHAVFLDARRFLPHIPQDQFPAQSLAASI  366 (450)
T ss_pred             ----hhhHHHHHHHHHHHHHHHHHHHHCC--------------CcccCCCCcceEEEEhHHhCCCCChhhChHHHHHHHH
Confidence                2221 22223335677777777664              4445677777777776542          35677777


Q ss_pred             HHHcCeeeec-CCcc-c----------CCCCeEEEEeec---ChhhHHHHHHHHHHHhhh
Q 024997          214 LKAAKIIGRE-GKKF-R----------AEARFVRLSLLK---SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       214 l~~~gi~~~~-g~~f-~----------~~~~~~Ris~~~---~~~~~~~~~~~l~~~l~~  258 (259)
                      ..+.||-..- |+.. +          ++-..+|+++-+   +.+.++...+++..+.++
T Consensus       367 y~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~  426 (450)
T TIGR02618       367 YVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKH  426 (450)
T ss_pred             HHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence            7788885332 3221 1          113579999955   889999999999887653

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=98.92  E-value=1.7e-07  Score=82.61  Aligned_cols=218  Identities=16%  Similarity=0.128  Sum_probs=132.4

Q ss_pred             cccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCC------CcEEEeeccc--c-----CCCC-CCCCCCC
Q 024997           21 FEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGP------YAKSIYDHAY--F-----WPHF-APIPAPA   81 (259)
Q Consensus        21 ~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~------~~~vi~De~y--~-----~~~~-~~~~~~~   81 (259)
                      +.+|+++|++.+++++.+|+++..||.||.+.+     ++|+++      |+++.+|.+|  +     .+.. ..+ ...
T Consensus       172 ~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~-~~~  250 (431)
T TIGR01788       172 YVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDF-RLP  250 (431)
T ss_pred             eeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhc-CCC
Confidence            568999999999888999999999999999983     889998      9999999999  1     1111 111 233


Q ss_pred             CCeEEEecccccc-CCCcceEEEEEecCHH-HHHHHHH---hhhh----hcCCCCHHHHHHHHHHHHHHHhcCCcchHHH
Q 024997           82 DEELMIFTISKLT-GHAGSRFGWAVIKDEA-VYQRMSA---YISL----NTMGVSRECQLRAFKLLKVVLEDGGNNIFEF  152 (259)
Q Consensus        82 ~~~i~~~S~SK~~-g~~G~R~G~i~~~~~~-~~~~~~~---~~~~----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  152 (259)
                      .-+-+..|.+|.+ +..|  +|+++..+++ +.+.+..   +...    .+...+...-.++..++. +. ..+..-+++
T Consensus       251 ~~DSis~s~HK~~~~P~g--~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~-l~-~lG~~G~~~  326 (431)
T TIGR01788       251 RVKSINVSGHKYGLVYPG--VGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYN-FL-RLGREGYRK  326 (431)
T ss_pred             CceEEEECchhccCCCCC--cEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHH-HH-HhcHHHHHH
Confidence            4466889999986 7777  8988887533 3333321   1110    011122221111111221 10 012234566


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeC--CCCCeeEEEecCC-----CchHHHHHHHHHcCeeeecCC
Q 024997          153 GYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIR--PPSPAYAWVKCER-----EEDKDCYGILKAAKIIGREGK  225 (259)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~ll~~~gi~~~~g~  225 (259)
                      ..++..++.+++.+.|++.+++.             ...  +..+. +.+..+.     .+...+.+.|.+.|+.+..-.
T Consensus       327 i~~~~~~la~~l~~~L~~~~~~e-------------l~~~~~~~~i-V~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~  392 (431)
T TIGR01788       327 IMQNSLDVARYLAEEIAKLGPFE-------------IISDGSGIPL-VAFKLKDDADPGYTLYDLSHRLRERGWIVPAYT  392 (431)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEE-------------EeeCCCCceE-EEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCC
Confidence            77788888888888888876532             222  23333 3333332     234556667778898653311


Q ss_pred             ccc-C-CCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          226 KFR-A-EARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       226 ~f~-~-~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      .-. . +.-.+|+++..  +.+.++..++.|+.++.
T Consensus       393 ~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~  428 (431)
T TIGR01788       393 LPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALA  428 (431)
T ss_pred             CCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            111 1 33468999853  77788888888887764

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=98.90  E-value=7.4e-08  Score=78.15  Aligned_cols=204  Identities=17%  Similarity=0.148  Sum_probs=131.5

Q ss_pred             cccChhhhcccCC--------CCceEEEEcCCCCCCh-hhH--------HHhhcCCCcEEEeeccc-cC---CCCCCCC-
Q 024997           21 FEGEANLWGNASS--------DTHLVEFVTAPNNPDG-QMN--------KAVLKGPYAKSIYDHAY-FW---PHFAPIP-   78 (259)
Q Consensus        21 ~~~d~~~l~~~~~--------~~~~~i~i~~p~NPtG-~~~--------~~la~~~~~~vi~De~y-~~---~~~~~~~-   78 (259)
                      -.++++++++.+.        +.+++|.+.|-||-+| .++        .+||+++|+.+-.|.+- |.   ....++. 
T Consensus       132 gtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~  211 (384)
T KOG1368|consen  132 GTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKK  211 (384)
T ss_pred             CeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHH
Confidence            3677888998873        3589999999998888 665        38999999999999987 31   1222322 


Q ss_pred             --CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCC--CHHHHHHHHHHHHHHHhcCCcchHHHHH
Q 024997           79 --APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGV--SRECQLRAFKLLKVVLEDGGNNIFEFGY  154 (259)
Q Consensus        79 --~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~  154 (259)
                        ...|.  +--.+||.+|.|   +|-++..+++++++-+..+...+.+.  +.+..++++-.|++     ...    ..
T Consensus       212 i~~~fDS--VsiCLSKglgAP---VGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~-----~~~----~L  277 (384)
T KOG1368|consen  212 ICSAFDS--VSICLSKGLGAP---VGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDE-----NVP----LL  277 (384)
T ss_pred             HHHhhhh--hhhhhhccCCCC---cccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhc-----chH----HH
Confidence              12222  233588999766   78666555899998877665544443  33333333333432     111    24


Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccccccccccceeeCC-CCCeeEEEec--CCCchHHHHHHHHHcCeeeecCCcccCCC
Q 024997          155 NTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP-PSPAYAWVKC--EREEDKDCYGILKAAKIIGREGKKFRAEA  231 (259)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~ll~~~gi~~~~g~~f~~~~  231 (259)
                      +.--++...+.+.++..++|++.             .+ ....++.+.+  +..+.+.+.+.++++||.+..|..     
T Consensus       278 ~~dHk~A~~lAe~~~~~~~i~v~-------------v~a~etNiv~~~l~q~~~~~~~l~~~~~k~gi~lm~~~s-----  339 (384)
T KOG1368|consen  278 RADHKRAKELAEYINTPEEIRVE-------------VPAVETNIVNMVLCQARLTAEELCKFLEKNGILLMGGAS-----  339 (384)
T ss_pred             HHHHHHHHHHHHHhccccceeee-------------cchhhcceeeeecccccCCHHHHHHHHHHCCeEEeeccc-----
Confidence            44556677777888877665433             22 2223333333  334677788888899999988543     


Q ss_pred             CeEEEEeec--ChhhHHHHHHHH-HHHh
Q 024997          232 RFVRLSLLK--SQDDFDLLLHRL-DELI  256 (259)
Q Consensus       232 ~~~Ris~~~--~~~~~~~~~~~l-~~~l  256 (259)
                      ..+|+.+-.  ++++++..+..+ +.++
T Consensus       340 ~r~Rivlh~Qvt~~~ve~~~~~~~k~~~  367 (384)
T KOG1368|consen  340 RRIRIVLHHQVTDEDVEYVKSVLSKKFL  367 (384)
T ss_pred             cceEEEEEEecCHHHHHHHHHHHHHHHH
Confidence            347999855  899999999998 4444

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=98.87  E-value=7.8e-08  Score=83.26  Aligned_cols=202  Identities=15%  Similarity=0.087  Sum_probs=116.1

Q ss_pred             CcccchhhhhhccCcc-------cccccChhhhcccCCCCceEEEEcCCC-CCChhh-HHHhhcCCCcEEEeeccc-cCC
Q 024997            3 FYPLYQEQTDYFESVD-------YKFEGEANLWGNASSDTHLVEFVTAPN-NPDGQM-NKAVLKGPYAKSIYDHAY-FWP   72 (259)
Q Consensus         3 ~y~~~~~~~~~~g~~~-------~~~~~d~~~l~~~~~~~~~~i~i~~p~-NPtG~~-~~~la~~~~~~vi~De~y-~~~   72 (259)
                      +|+.....+...|.++       ..+.+|++.+++.+++++++|++++.. +|.-.- +.++|+++|++||+|-++ ++.
T Consensus        74 t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~  153 (363)
T PF01041_consen   74 TFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVVHLFGNPADMDAIRAIARKHGIPLIEDAAQAFGA  153 (363)
T ss_dssp             S-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE-GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-
T ss_pred             cchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEecCCCCcccHHHHHHHHHHcCCcEEEccccccCc
Confidence            3455556666677765       347889999999999999998888863 666211 148899999999999987 321


Q ss_pred             C--CCCCCCCCCCeEEEecc--ccccCC-CcceEEEEEecCHHHHHHHHHhhhhh-----------------cCCCCHHH
Q 024997           73 H--FAPIPAPADEELMIFTI--SKLTGH-AGSRFGWAVIKDEAVYQRMSAYISLN-----------------TMGVSREC  130 (259)
Q Consensus        73 ~--~~~~~~~~~~~i~~~S~--SK~~g~-~G~R~G~i~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~  130 (259)
                      .  ...+ +.. -.+.+.||  +|.+.. -|   |+++++++++.+.++.+....                 ....+.++
T Consensus       154 ~~~g~~~-G~~-gd~~~fSf~~~K~i~~geG---G~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~  228 (363)
T PF01041_consen  154 RYKGRPV-GSF-GDIAIFSFHPTKIITTGEG---GAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQ  228 (363)
T ss_dssp             EETTEET-TSS-SSEEEEESSTTSSS-SSS----EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHH
T ss_pred             eeCCEec-cCC-CCceEecCCCCCCCcCCCC---eeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHH
Confidence            1  1111 111 26667777  588842 34   999998888888887755322                 23355555


Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---ch
Q 024997          131 QLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---ED  207 (259)
Q Consensus       131 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  207 (259)
                      .+.+..-|+         .+++..+.-+++...+.+.|++++++.....++...       ....+...+.++..   +.
T Consensus       229 AAigl~QL~---------~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~-------~~~~~~f~i~~~~~~~~~r  292 (363)
T PF01041_consen  229 AAIGLAQLK---------RLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAE-------RSSYYRFPIRLPDEALADR  292 (363)
T ss_dssp             HHHHHHHHH---------THHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTE-------EBCESSEEEEETCCGCSTH
T ss_pred             HHHHHHHHH---------HhhhhHHHHHHHHHHHHHHHhcCCCccccccccccc-------ccccccccccccccccchH
Confidence            555555555         344456666677777777788776543222111000       00111223334432   45


Q ss_pred             HHHHHHHHHcCeeeecCC
Q 024997          208 KDCYGILKAAKIIGREGK  225 (259)
Q Consensus       208 ~~~~~ll~~~gi~~~~g~  225 (259)
                      +.+.+.|++.||.+.+..
T Consensus       293 d~l~~~L~~~GI~~~~~~  310 (363)
T PF01041_consen  293 DELVEALRARGIETRPHY  310 (363)
T ss_dssp             HHHHHHHHHTTBEEBCST
T ss_pred             HHHHHHHHHCCCcccccc
Confidence            777778888999988754

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=98.85  E-value=7.7e-09  Score=79.03  Aligned_cols=103  Identities=9%  Similarity=0.007  Sum_probs=70.5

Q ss_pred             CCcccch-hhhhhccCcccccccC--------hhhhcccC-CCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEee
Q 024997            2 PFYPLYQ-EQTDYFESVDYKFEGE--------ANLWGNAS-SDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYD   66 (259)
Q Consensus         2 P~y~~~~-~~~~~~g~~~~~~~~d--------~~~l~~~~-~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~D   66 (259)
                      |+|+... ..+...|.+...+..+        .+.+++.. .++++++++++|+||+|...     .++|+++|+++|+|
T Consensus        49 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D  128 (170)
T cd01494          49 NGHGSRYWVAAELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVD  128 (170)
T ss_pred             cccceehhhHHHhcCCEEEEeccCCCCccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEe
Confidence            5676666 6666667665322111        11344433 56889999999999999876     38899999999999


Q ss_pred             ccccCCCCC--CC-CCCCCCeEEEeccccccCCCcceEEEEEe
Q 024997           67 HAYFWPHFA--PI-PAPADEELMIFTISKLTGHAGSRFGWAVI  106 (259)
Q Consensus        67 e~y~~~~~~--~~-~~~~~~~i~~~S~SK~~g~~G~R~G~i~~  106 (259)
                      ++|......  .. ....+.++++.|++|.++.  .++|++++
T Consensus       129 ~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~~~~--~~~G~l~~  169 (170)
T cd01494         129 AASAGGASPAPGVLIPEGGADVVTFSLHKNLGG--EGGGVVIV  169 (170)
T ss_pred             cccccccccccccccccccCCEEEEEcccccCC--CceEEEEe
Confidence            999421111  11 1234568899999999985  66999875

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=98.84  E-value=3e-07  Score=87.79  Aligned_cols=215  Identities=9%  Similarity=0.026  Sum_probs=132.7

Q ss_pred             ccChhhhcccCC---CCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCC-CCCCCCCCCCeEEEecccc
Q 024997           22 EGEANLWGNASS---DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPH-FAPIPAPADEELMIFTISK   92 (259)
Q Consensus        22 ~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~-~~~~~~~~~~~i~~~S~SK   92 (259)
                      .+|+++|++.++   +++++|++++|||-+|...     .++|+++|+.+++|.++.-.. ....++..+-+++.+|..|
T Consensus       650 ~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~s~HK  729 (993)
T PLN02414        650 NINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHK  729 (993)
T ss_pred             CcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCEEEecCCc
Confidence            578899999996   4789999999999999987     388999999999999883212 1122245667999999999


Q ss_pred             ccCC----CcceEEEEEecCHHHHHHHHHhh-----------hhhcCCC---CHHHHH----HHHHHHHHHHhcCCcchH
Q 024997           93 LTGH----AGSRFGWAVIKDEAVYQRMSAYI-----------SLNTMGV---SRECQL----RAFKLLKVVLEDGGNNIF  150 (259)
Q Consensus        93 ~~g~----~G~R~G~i~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~q~----~~~~~l~~~~~~~~~~~~  150 (259)
                      .|+.    -|=-+|++++. +++...+-...           .....|.   ++..|.    ++..++...    +.+-+
T Consensus       730 ~f~~P~G~GGPg~G~l~~~-~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~l----G~~Gl  804 (993)
T PLN02414        730 TFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMM----GSEGL  804 (993)
T ss_pred             cCCcCcccCCCCeeeEEEc-hhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHH----CHhHH
Confidence            6641    22338999988 67766553211           0011122   122222    233334432    33345


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCC-ee-EEEecC---C---Cc-hHHHHHHHHHcCeee
Q 024997          151 EFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSP-AY-AWVKCE---R---EE-DKDCYGILKAAKIIG  221 (259)
Q Consensus       151 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~---~---~~-~~~~~~ll~~~gi~~  221 (259)
                      .+..+....+..++.+.|++...  +.           ...+.+. ++ ..+++.   +   .+ .+..++|+ ++||..
T Consensus       805 ~~~a~~a~~nAnYl~~rL~~~~~--~~-----------~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~-d~Giha  870 (993)
T PLN02414        805 TDASKIAILNANYMAKRLEGHYP--VL-----------FRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLM-DYGFHA  870 (993)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCC--cc-----------ccCCCCCeeeeEEEeccccccccCCCHHHHHHHHH-HcCcEE
Confidence            55566677777888888876322  11           1111111 11 112222   1   12 45555555 789975


Q ss_pred             ecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          222 REGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       222 ~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      -- ..|. ..+.+|++..-  ++++++..++.+..+..
T Consensus       871 pt-~~~p-v~~~lmiepTE~~skeelDrf~~al~~i~~  906 (993)
T PLN02414        871 PT-MSWP-VPGTLMIEPTESESKAELDRFCDALISIRE  906 (993)
T ss_pred             ee-eccc-cCCEEEEEeeeeCCHHHHHHHHHHHHHHHH
Confidence            43 3353 46899999864  88999999999877654

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.84  E-value=1.2e-06  Score=73.92  Aligned_cols=214  Identities=13%  Similarity=0.058  Sum_probs=138.3

Q ss_pred             cccChhhhcccC-CCCceEEEEcCCCCCChhhH---HHhhcCCCcEEEeecccc-----CC-CCCCCCCCCCCeEEEecc
Q 024997           21 FEGEANLWGNAS-SDTHLVEFVTAPNNPDGQMN---KAVLKGPYAKSIYDHAYF-----WP-HFAPIPAPADEELMIFTI   90 (259)
Q Consensus        21 ~~~d~~~l~~~~-~~~~~~i~i~~p~NPtG~~~---~~la~~~~~~vi~De~y~-----~~-~~~~~~~~~~~~i~~~S~   90 (259)
                      ..+|.|++++.+ ..++|+|+.-.--.|-=.-+   .++|.+-|+++++|-+++     +. ...++   +...++.+|.
T Consensus       151 ~~IDyD~~~k~a~e~kPK~ii~G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~---~~AdvVTtTT  227 (413)
T COG0112         151 GLIDYDEVEKLAKEVKPKLIIAGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPL---PHADVVTTTT  227 (413)
T ss_pred             CccCHHHHHHHHHHhCCCEEEECccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCC---CccceEeCCc
Confidence            357778888877 45899955544334443344   389999999999999994     11 11222   2358999999


Q ss_pred             ccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHH-HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHH
Q 024997           91 SKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRA-FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIIS  169 (259)
Q Consensus        91 SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  169 (259)
                      +|+|  .|=|-|.|.+.++++.+++....-+...+.+..--.++ +-++.+.    .+.-+.+..+++-+|.+.|.+.|.
T Consensus       228 HKTl--rGPrGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Ea----l~p~fk~Ya~qVv~NAkaLAe~l~  301 (413)
T COG0112         228 HKTL--RGPRGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEA----LEPEFKEYAKQVVKNAKALAEALK  301 (413)
T ss_pred             ccCC--CCCCceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHH----cChhHHHHHHHHHHHHHHHHHHHH
Confidence            9998  45566999988668988888765554444333221111 1122322    233456677888999999999999


Q ss_pred             hcCCCccccccccccccceeeCCCCCe-eEEEecCC--CchHHHHHHHHHcCeeeec-CCcccC----CCCeEEEEe---
Q 024997          170 LSNRFSLQEIAPQYCTYFKKIRPPSPA-YAWVKCER--EEDKDCYGILKAAKIIGRE-GKKFRA----EARFVRLSL---  238 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~ll~~~gi~~~~-g~~f~~----~~~~~Ris~---  238 (259)
                      +.+              ++.+..-.-. -+.+|+..  .+...+..+|++.||.+.- +-.|.+    .+..+||..   
T Consensus       302 ~~G--------------~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~  367 (413)
T COG0112         302 ERG--------------FKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAV  367 (413)
T ss_pred             HcC--------------CeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHH
Confidence            865              3333311112 34567763  3688999999999998643 222332    256789996   


Q ss_pred             ---ecChhhHHHHHHHHHHHhh
Q 024997          239 ---LKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       239 ---~~~~~~~~~~~~~l~~~l~  257 (259)
                         +..++++++..+-|.+++.
T Consensus       368 TtrG~~e~e~~~Ia~~I~~vl~  389 (413)
T COG0112         368 TTRGFGEAEMEEIADLIADVLD  389 (413)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHh
Confidence               2266788888888777764

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=98.83  E-value=5.2e-08  Score=86.43  Aligned_cols=205  Identities=11%  Similarity=0.079  Sum_probs=111.0

Q ss_pred             hhhcccCC---CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCe--EEEe
Q 024997           26 NLWGNASS---DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEE--LMIF   88 (259)
Q Consensus        26 ~~l~~~~~---~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~--i~~~   88 (259)
                      +.|++.+.   ++..++++.....-.|.+.         .++|+++|+++|+||++  |+.....+. +..+..  --+-
T Consensus       239 ~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~  318 (464)
T TIGR00699       239 EEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMV  318 (464)
T ss_pred             HHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEE
Confidence            44555552   3566745444344444444         28999999999999998  432111111 000100  1257


Q ss_pred             ccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 024997           89 TISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKII  168 (259)
Q Consensus        89 S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (259)
                      +++|.+|..|    +++..  +............+++.+++.-+++.+.|+...+   ++.    .+..++.-+++.+.|
T Consensus       319 t~gK~lg~gG----~~~~~--~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~---~~l----~~~~~~~g~~l~~~L  385 (464)
T TIGR00699       319 TFSKKFQTAG----YFFHD--PAFRPNKPYRQFNTWMGDPSRALILREIIQEIKR---KDL----LENVAHVGDYLYTGL  385 (464)
T ss_pred             EehhhhccCC----ccccc--hhccCCCCcccccCCCCCHHHHHHHHHHHHHHHh---cCH----HHHHHHHHHHHHHHH
Confidence            8899996334    44433  2222111223445677888888888878875421   222    334444444555555


Q ss_pred             HhcCCCccccccccccccceeeC-CCCCeeEEEecCCCc-hHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--Chhh
Q 024997          169 SLSNRFSLQEIAPQYCTYFKKIR-PPSPAYAWVKCEREE-DKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDD  244 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~  244 (259)
                      +++..    .++.    .+..+. ...|..+-+.++... ...+.+.+.++|+.+.+.     +.+.+||+..-  ++++
T Consensus       386 ~~l~~----~~~~----~i~~vRg~G~Glm~gie~~~~~~~~~i~~~~~~~Gvl~~~~-----g~~~ir~~Ppl~it~~e  452 (464)
T TIGR00699       386 EDLQK----KYPE----FIQNLRGKGRGTFIAWDTPDEAKRDKLLKKARNNGVNIGGC-----GVKAIRLRPMLVFQKHH  452 (464)
T ss_pred             HHHHH----hCCC----ceeeecccCeEEEEEEecCCHHHHHHHHHHHHHCCcEEecC-----CCCeEEEeCCCCCCHHH
Confidence            44320    0000    022222 022444445554321 233444455689998762     34789999743  9999


Q ss_pred             HHHHHHHHHHHh
Q 024997          245 FDLLLHRLDELI  256 (259)
Q Consensus       245 ~~~~~~~l~~~l  256 (259)
                      +++++++|.+.+
T Consensus       453 id~~~~~l~~~~  464 (464)
T TIGR00699       453 ADIFLEIISKII  464 (464)
T ss_pred             HHHHHHHHHHhC
Confidence            999999998764

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=98.81  E-value=2.1e-07  Score=78.14  Aligned_cols=176  Identities=15%  Similarity=0.107  Sum_probs=111.5

Q ss_pred             HhhcCCCcEEEeeccc--cCC--CCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhh-hhhcCCCCH
Q 024997           54 AVLKGPYAKSIYDHAY--FWP--HFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI-SLNTMGVSR  128 (259)
Q Consensus        54 ~la~~~~~~vi~De~y--~~~--~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~-~~~~~~~~~  128 (259)
                      ++|+++|.++|.||++  |+.  ++..+ +..+.+=-+-|++|.+| .|..+|.++.. +++.+-+.+.. ...+.+.+|
T Consensus       240 ~~v~k~Ggl~IaDEVqtGfGRtG~~wgf-e~h~v~PDIvTmAKgiG-nG~Pl~AVvtt-~EIa~v~~~~~~~fnTyggnP  316 (442)
T KOG1404|consen  240 KVVRKRGGLFIADEVQTGFGRTGHMWGF-ESHGVVPDIVTMAKGIG-NGFPLGAVVTT-PEIADVLNQKSSHFNTYGGNP  316 (442)
T ss_pred             HHHHHcCCEEEehhhhhccccccccccc-cccCCCccHHHHHhhcc-CCCcceeeecC-HHHHHHHHhccccccccCCCc
Confidence            8999999999999999  632  34444 33344445889999998 89999999999 69999998877 677889999


Q ss_pred             HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEe---cC-C
Q 024997          129 ECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVK---CE-R  204 (259)
Q Consensus       129 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~  204 (259)
                      +.-+++.++++...    ++.+++.   -++--.++.+.|..+.+    .     ...+..++..|-+ +=+.   -+ +
T Consensus       317 ~a~avg~aVL~Vik----ee~LqE~---aa~vG~yl~~~l~~l~d----~-----h~iIGdVRG~GLm-~GvE~V~dk~~  379 (442)
T KOG1404|consen  317 VACAVGLAVLKVIK----EENLQEN---AAEVGSYLLEKLAALKD----K-----HPIIGDVRGRGLM-LGVELVSDKSE  379 (442)
T ss_pred             hhHHHHHHHHHHHH----HHhHHHH---HHHHHHHHHHHHHHHhh----c-----CCceeecccceeE-EEEEEecccCC
Confidence            99999988888642    1222222   23333334444443321    0     0002222222211 1111   11 1


Q ss_pred             C------chHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHHHHHHH
Q 024997          205 E------EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDLLLHRL  252 (259)
Q Consensus       205 ~------~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~~~~~l  252 (259)
                      .      ....+.+.++++|+.+--|.-++   +.+||+.-  .++++++.+++..
T Consensus       380 ~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G---~vfriaPPlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  380 PKPPATAEGAVIGEQCKELGVLVGKGGIHG---NVFRIAPPLCITKEDIDFAVEYF  432 (442)
T ss_pred             CCCcchHHHHHHHHHHHHhCeeeecccccc---eEEEecCCeeccHHHHHHHHHHH
Confidence            1      23556677778999994444333   58999963  3889987777644

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.79  E-value=4.1e-07  Score=85.59  Aligned_cols=197  Identities=14%  Similarity=0.092  Sum_probs=118.5

Q ss_pred             CceEEEEcCC--CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEeccccccCCCc-c
Q 024997           35 THLVEFVTAP--NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFTISKLTGHAG-S   99 (259)
Q Consensus        35 ~~~~i~i~~p--~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G-~   99 (259)
                      +..+ +|..|  +.-.|.+.         .++|+++|+++|.||++  |+.-...+. +..+..=-+-+++|.++ .| +
T Consensus       584 ~iAA-vI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~gKgLt-gG~~  661 (817)
T PLN02974        584 HIAA-LIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIACYAKLLT-GGLV  661 (817)
T ss_pred             CEEE-EEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEeeccccc-CCCC
Confidence            4555 56666  45445554         28999999999999999  532221111 11111122778999997 78 6


Q ss_pred             eEEEEEecCHHHHHHHHH------hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH----H
Q 024997          100 RFGWAVIKDEAVYQRMSA------YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKII----S  169 (259)
Q Consensus       100 R~G~i~~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~  169 (259)
                      .+|.+++. +++.+.+..      .....+++.+++.-+++.+.|+...   .++..+...+.-++..+.+.+.|    +
T Consensus       662 Plaa~l~~-~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~---~~~~~~~l~~~~~~l~~~l~~~l~~~l~  737 (817)
T PLN02974        662 PLAATLAT-EEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYK---DPSTNPNLIPPGSRLRELWDEELVRAIS  737 (817)
T ss_pred             ccEEEEEc-HHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999 799998852      2245678889999999988888652   22233333333333333333333    3


Q ss_pred             hcCCCccccccccccccceeeCCCCCeeEEEecCCC------c---hHHHHHHHH-HcCeeeecCCcccCCCCeEEEEee
Q 024997          170 LSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE------E---DKDCYGILK-AAKIIGREGKKFRAEARFVRLSLL  239 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~ll~-~~gi~~~~g~~f~~~~~~~Ris~~  239 (259)
                      +++.             +..+... |..+-+.+...      +   ...+.+.+. ++||.++|.     + +.+|+...
T Consensus       738 ~~p~-------------V~~VRg~-Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~-----G-nvi~l~pP  797 (817)
T PLN02974        738 SLPN-------------VERVVSL-GTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL-----G-NVVYLMCG  797 (817)
T ss_pred             hCCC-------------eeEEEee-eeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec-----C-CEEEEeCC
Confidence            2221             2222322 33333333211      0   123344444 789999982     2 67887643


Q ss_pred             c--ChhhHHHHHHHHHHHhh
Q 024997          240 K--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       240 ~--~~~~~~~~~~~l~~~l~  257 (259)
                      .  ++++++++++++.+.|+
T Consensus       798 ~~i~~e~l~~~~~~l~~~~~  817 (817)
T PLN02974        798 PTTSPETCTRLLRKVYRRLS  817 (817)
T ss_pred             CCCCHHHHHHHHHHHHHHhC
Confidence            3  89999999999988763

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=98.79  E-value=2.6e-07  Score=81.77  Aligned_cols=192  Identities=11%  Similarity=0.066  Sum_probs=103.7

Q ss_pred             CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeEEEeccccccCCCc
Q 024997           34 DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEELMIFTISKLTGHAG   98 (259)
Q Consensus        34 ~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i~~~S~SK~~g~~G   98 (259)
                      +++.++++.....-.|.+.         .++|+++|+++|+||++  |+.....+.    +.. .++  -+++|.+. .|
T Consensus       217 ~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~-PDi--~~~gK~~~-~~  292 (431)
T TIGR03251       217 HDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQ-PDI--VAFGKKTQ-VC  292 (431)
T ss_pred             CcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCC-CCE--EEecccCc-cc
Confidence            4677755554454455543         38999999999999998  422211111    111 222  25788863 22


Q ss_pred             ceEEEEEecCHHHHHHHHH-----hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCC
Q 024997           99 SRFGWAVIKDEAVYQRMSA-----YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNR  173 (259)
Q Consensus        99 ~R~G~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  173 (259)
                         |++...  ++.+.+..     .....+++.+++..+++.+.++...+   ++.    .+.+++.-+++.+.|+++..
T Consensus       293 ---g~~~~~--~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~---~~l----~~~~~~~g~~l~~~L~~l~~  360 (431)
T TIGR03251       293 ---GIMAGR--RVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEE---ERL----VDNARVQGAHLLARLHELAA  360 (431)
T ss_pred             ---eEEecc--hHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHh---cCH----HHHHHHHHHHHHHHHHHHHH
Confidence               555533  33221211     11335577888888888888875421   223    23344444444444443210


Q ss_pred             CccccccccccccceeeCCCCCeeEEEecCCCc-hHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHHHHH
Q 024997          174 FSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREE-DKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDLLLH  250 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~~~~  250 (259)
                          ..+.    .+...... |....+.+...+ ...+...+.++||.+.+.     +.+.+|++..  .++++++++++
T Consensus       361 ----~~~~----~i~~vrg~-G~~~~i~~~~~~~~~~~~~~l~~~Gvl~~~~-----g~~~lr~~P~l~~t~~eid~~l~  426 (431)
T TIGR03251       361 ----EFPH----LVSNPRGR-GLMCAFDLPSTADRDEVIRQLYREGVLLLGC-----GERSIRFRPPLTVTREEIDAAID  426 (431)
T ss_pred             ----hCcc----ceeccccc-ceeEEEEeCCHHHHHHHHHHHHhCCeEEecC-----CCCeEEEECCccCCHHHHHHHHH
Confidence                0000    01112233 444455554321 233444455789999762     2366888764  48999999999


Q ss_pred             HHHHH
Q 024997          251 RLDEL  255 (259)
Q Consensus       251 ~l~~~  255 (259)
                      ++.++
T Consensus       427 ~l~~~  431 (431)
T TIGR03251       427 AIRRV  431 (431)
T ss_pred             HHHhC
Confidence            98763

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=98.73  E-value=4.2e-07  Score=75.96  Aligned_cols=206  Identities=15%  Similarity=0.074  Sum_probs=125.1

Q ss_pred             ccChhhhcccCC------CCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEeeccccCCC----CCCCCC-CCC
Q 024997           22 EGEANLWGNASS------DTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIYDHAYFWPH----FAPIPA-PAD   82 (259)
Q Consensus        22 ~~d~~~l~~~~~------~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~De~y~~~~----~~~~~~-~~~   82 (259)
                      .++++++++.+.      ..+.++++.|++|--|.+++        ++|+++|+.+..|.+=|+..    ...... ...
T Consensus       111 klt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~  190 (342)
T COG2008         111 KLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSY  190 (342)
T ss_pred             CcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhh
Confidence            677888888663      13455577777778899983        89999999999998864211    111111 234


Q ss_pred             CeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCC--CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 024997           83 EELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGV--SRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKR  160 (259)
Q Consensus        83 ~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  160 (259)
                      .+.+..++||..+.++   |.|++-+.++++++..++.....+.  ..+..+....+|++      +-|   ++...-++
T Consensus       191 ~D~v~~~~tK~g~~~~---gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~------~~~---~~~~~Han  258 (342)
T COG2008         191 VDSVSFCLTKGGGAPV---GAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALED------DVW---RLAADHAN  258 (342)
T ss_pred             CCEEEEecccCCccee---eeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhc------cHH---HHHHHHHH
Confidence            5777888999987775   8888777899999877665433332  33333444445541      212   12222333


Q ss_pred             --HHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEe
Q 024997          161 --WENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSL  238 (259)
Q Consensus       161 --~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~  238 (259)
                        ...+.+.+++.+++             +...|.-.+.+++++++..   . +.++..|+...-|..-+.....+|+..
T Consensus       259 ~mA~~La~~~~~~~G~-------------~~~~~~~tN~vf~~l~~~~---i-~~l~~~~~~~~~~~~~~~~~~~vRfvt  321 (342)
T COG2008         259 AMAARLAEGLEAKPGV-------------KLAFPVETNMVFVRLPESA---I-EALRLAGALFYRGVLIGAHGEIVRFVT  321 (342)
T ss_pred             HHHHHHHHhhhhcCCc-------------eeccCCcccEEEEECChHH---H-HHHHhhchhheeeeeccCCCceEEEEe
Confidence              66677777766553             3335555677788886531   1 223333333322221111114689887


Q ss_pred             ec--ChhhHHHHHHHHHHHh
Q 024997          239 LK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       239 ~~--~~~~~~~~~~~l~~~l  256 (259)
                      +.  +++++++++..+++++
T Consensus       322 s~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         322 SWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             eccCCHHHHHHHHHHHHHhh
Confidence            55  8899999999998875

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=98.73  E-value=6.5e-07  Score=77.89  Aligned_cols=208  Identities=12%  Similarity=0.056  Sum_probs=124.3

Q ss_pred             hhhhcccC---C-CCceEEEEcCCC-CC-ChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEE
Q 024997           25 ANLWGNAS---S-DTHLVEFVTAPN-NP-DGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELM   86 (259)
Q Consensus        25 ~~~l~~~~---~-~~~~~i~i~~p~-NP-tG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~   86 (259)
                      .++|++.+   . ++..+ ||.-|- -- .|.++         .++|++||+++|.||+-  |+.-...+. +..+..=-
T Consensus       200 a~~le~~i~~~g~~~IAA-fI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PD  278 (449)
T COG0161         200 ADELEALILEHGPETIAA-FIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPD  278 (449)
T ss_pred             HHHHHHHHHhcCcccEEE-EEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCC
Confidence            35566666   3 34455 777773 33 44444         28999999999999998  643333332 11111112


Q ss_pred             EeccccccCCCcceEEEEEecCHHHHHHHHHh-----hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 024997           87 IFTISKLTGHAGSRFGWAVIKDEAVYQRMSAY-----ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRW  161 (259)
Q Consensus        87 ~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  161 (259)
                      +-+++|.+...=+.+|.+++. .++.+.+..-     .+..++..+|++-+++++.|+-..   .+++    .++.++.-
T Consensus       279 i~~~aKGLT~GY~Pl~a~l~~-~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e---~e~l----~~~~~~~~  350 (449)
T COG0161         279 ILCLAKGLTGGYLPLSAVLTS-DRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILE---EEDL----LERVAEIG  350 (449)
T ss_pred             eeeecccccccchhhHhHhhh-HHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHH---hcCH----HHHHHHHH
Confidence            667889885344556767777 5888887663     345678889988888888887652   3344    44444555


Q ss_pred             HHHHHHHHh-cCCCccccccccccccceeeCCCCCeeEEEecCCC-c---------hHHHHHHHHHcCeeeecCCcccCC
Q 024997          162 ENLSKIISL-SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-E---------DKDCYGILKAAKIIGREGKKFRAE  230 (259)
Q Consensus       162 ~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~ll~~~gi~~~~g~~f~~~  230 (259)
                      .++.+.|++ +.+          ...+..++.. |+..-+.+... +         ...+...+.++|+.+||.   +  
T Consensus       351 ~~l~~~L~~~l~~----------~p~VgdVR~~-Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~---g--  414 (449)
T COG0161         351 AYLQAGLQAALAD----------HPLVGDVRGL-GLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPL---G--  414 (449)
T ss_pred             HHHHHHHHHhccc----------CCcEEEeecc-ceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeec---C--
Confidence            555555554 221          0112223333 33333333211 1         346666777899999994   2  


Q ss_pred             CCeEEEEe--ecChhhHHHHHHHHHHHhhh
Q 024997          231 ARFVRLSL--LKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       231 ~~~~Ris~--~~~~~~~~~~~~~l~~~l~~  258 (259)
                       +.+=++.  ..++++++++++++.+.+++
T Consensus       415 -~~i~~~PPliit~~eid~l~~~l~~al~~  443 (449)
T COG0161         415 -DVIYLMPPLIITREEIDELVDALREALDE  443 (449)
T ss_pred             -CEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence             2333332  23889999999999988764

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.68  E-value=9.5e-07  Score=72.80  Aligned_cols=207  Identities=14%  Similarity=0.087  Sum_probs=126.3

Q ss_pred             ChhhhcccCCC-CceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeecccc--CCCC--CCCC--C-CCCCeE
Q 024997           24 EANLWGNASSD-THLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAYF--WPHF--APIP--A-PADEEL   85 (259)
Q Consensus        24 d~~~l~~~~~~-~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y~--~~~~--~~~~--~-~~~~~i   85 (259)
                      |.++|+.+++. .... ++..| +--.|.+.         .+||.+||.++|.||++-  +...  ....  + .+|.+ 
T Consensus       195 d~eale~~l~~~~vaa-FivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDiv-  272 (427)
T KOG1402|consen  195 DAEALEVALKSPNVAA-FIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIV-  272 (427)
T ss_pred             CHHHHHHHhcCCCeeE-EEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeE-
Confidence            46778888854 5666 66666 44444444         399999999999999982  2221  1111  1 23322 


Q ss_pred             EEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 024997           86 MIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLS  165 (259)
Q Consensus        86 ~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (259)
                         -+.|.++.-=..+..+.++ .+++-.++.-.+..+++.+++.-+++.++|+.+.+       +...++-.+.-+.++
T Consensus       273 ---ilgKalSGG~~Pvsavl~~-~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~e-------ekL~era~~lG~~l~  341 (427)
T KOG1402|consen  273 ---ILGKALSGGVYPVSAVLAD-DDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVE-------EKLVERAAKLGEILR  341 (427)
T ss_pred             ---EEeccccCCeeeeEEEEec-HHHHhccCCCccccccCCChHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence               2457775333457778888 59998888877888899999999999999885411       122334444445555


Q ss_pred             HHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--c-hH--HHHHHHHHcCeeeecCCcccCCCCeEEEEe--
Q 024997          166 KIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--E-DK--DCYGILKAAKIIGREGKKFRAEARFVRLSL--  238 (259)
Q Consensus       166 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~--~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~--  238 (259)
                      ..|..++.    .+    -.+++.+... |++..+.+...  + .+  .....++++|++..|-.     .+-+|++.  
T Consensus       342 ~~L~~l~~----~~----p~~v~~VRGr-Gl~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkptH-----~~IiRfaPPL  407 (427)
T KOG1402|consen  342 DQLNKLQK----KF----PHVVKEVRGR-GLLNAIVINPSKTSGQDAWDVCLALKENGLLAKPTH-----GNIIRFAPPL  407 (427)
T ss_pred             HHHHhccc----cc----cchhheeecc-ceEEEEEeccccccchhHHHHHHcccccccccCCCC-----CCeEEecCCc
Confidence            66665541    11    1112333333 44444444321  1 11  12233556788777622     36889996  


Q ss_pred             ecChhhHHHHHHHHHHHhh
Q 024997          239 LKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       239 ~~~~~~~~~~~~~l~~~l~  257 (259)
                      ..++++++++++.+.+.+.
T Consensus       408 ~I~e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  408 VISEEDLREGIEAIEKTIA  426 (427)
T ss_pred             ccCHHHHHHHHHHHHHHhc
Confidence            3389999999999988764

>PLN02452 phosphoserine transaminase

Probab=98.66  E-value=3e-06  Score=73.22  Aligned_cols=205  Identities=11%  Similarity=0.021  Sum_probs=128.9

Q ss_pred             CCCceEEEEcCCCCCChhhHHHhhcCCCcEEEeeccc-cCCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHH
Q 024997           33 SDTHLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAY-FWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAV  111 (259)
Q Consensus        33 ~~~~~~i~i~~p~NPtG~~~~~la~~~~~~vi~De~y-~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~  111 (259)
                      +++.+.+.+++-.-.||..+..+..--++.+|+|.+. +......+ +..+  +...|.-|.+|.+|  +|++++. +++
T Consensus       143 ~~~~~~v~~~hnETstGv~~~~~~~i~~~~lvVDa~Ss~g~~pidv-~~~~--v~~~saqK~lGP~G--l~~v~vr-~~~  216 (365)
T PLN02452        143 TPDAKFVHICANETIHGVEFKDYPDVGNVPLVADMSSNFLSKPVDV-SKYG--VIYAGAQKNVGPSG--VTIVIIR-KDL  216 (365)
T ss_pred             CCCCcEEEECCCCCCCcEecCcccccCCCeEEEECCccccCcccCH-HHcC--EEEEecccccCCCC--eEEEEEc-HHH
Confidence            3466776666666799997543322224899999866 22111111 2222  34469999999999  8999999 688


Q ss_pred             HHHHHHh-------hh----hhc-CCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q 024997          112 YQRMSAY-------IS----LNT-MGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEI  179 (259)
Q Consensus       112 ~~~~~~~-------~~----~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  179 (259)
                      ++.+...       ..    ... .-++...-++...+++...+   +.-++.+.++.++..+.+.+.|++..++-....
T Consensus       217 l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~---~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~  293 (365)
T PLN02452        217 IGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLA---QGGLKAMEKRNIRKADLLYDAIDESNGFYVCPV  293 (365)
T ss_pred             HhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence            7765321       10    011 23344555556666665422   112677888999999999999987654300000


Q ss_pred             cccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHh
Q 024997          180 APQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l  256 (259)
                      .+         ...+.+.+.+.+++. ..+.+.+.++++|+...+|..-- + + +|+|+=.  +.++++.+++.++++-
T Consensus       294 ~~---------~~rs~~~vsF~~~~~~~~~~f~~~~~~~g~~~~~G~r~~-g-g-~R~s~yna~~~~~v~~L~~~m~~f~  361 (365)
T PLN02452        294 EK---------SVRSLMNVPFTLGGSELEAEFVKEAAKAGMVQLKGHRSV-G-G-MRASIYNAMPLAGVEKLVAFMKDFQ  361 (365)
T ss_pred             Ch---------HHhCCeEEEEEcCCchhHHHHHHHHHHCCCcccCCcccc-C-c-eEEECcCCCCHHHHHHHHHHHHHHH
Confidence            00         113455556666553 35677788889999999987553 2 3 9999733  8999999999998876


Q ss_pred             hh
Q 024997          257 SK  258 (259)
Q Consensus       257 ~~  258 (259)
                      ++
T Consensus       362 ~~  363 (365)
T PLN02452        362 AK  363 (365)
T ss_pred             Hh
Confidence            53

>PLN03032 serine decarboxylase; Provisional

Probab=98.55  E-value=7.7e-06  Score=70.79  Aligned_cols=200  Identities=15%  Similarity=0.068  Sum_probs=119.5

Q ss_pred             cccChhhhcccCCC---CceEEEEcCCCCCChhhH-----HHhhcCCC-----cEEEeeccccC---C---CCCCCCCCC
Q 024997           21 FEGEANLWGNASSD---THLVEFVTAPNNPDGQMN-----KAVLKGPY-----AKSIYDHAYFW---P---HFAPIPAPA   81 (259)
Q Consensus        21 ~~~d~~~l~~~~~~---~~~~i~i~~p~NPtG~~~-----~~la~~~~-----~~vi~De~y~~---~---~~~~~~~~~   81 (259)
                      ..+|+++|++.+++   .+.+++++..+|+||.+-     .++|+++|     +|+.+|.+|.+   +   ....+....
T Consensus       144 g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~  223 (374)
T PLN03032        144 GEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRK  223 (374)
T ss_pred             CcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCc
Confidence            57899999999854   577888888999999998     38898886     59999999821   1   011111122


Q ss_pred             CCeEEEeccccccC-CCcceEEEEEecCHHHHHHHHHhhhhh-----cCCCCHHHH--HHHHHHHHHHHhcCCcchHHHH
Q 024997           82 DEELMIFTISKLTG-HAGSRFGWAVIKDEAVYQRMSAYISLN-----TMGVSRECQ--LRAFKLLKVVLEDGGNNIFEFG  153 (259)
Q Consensus        82 ~~~i~~~S~SK~~g-~~G~R~G~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~q--~~~~~~l~~~~~~~~~~~~~~~  153 (259)
                      .-+-+..|.+|.+| ..|  +|.++.. ++..+.+.....+.     +...|....  ..+-..++..    +.+-+.+.
T Consensus       224 ~vDSis~s~HK~~g~P~g--~G~ll~r-~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~----G~~g~~~~  296 (374)
T PLN03032        224 PIGSVSVSGHKFLGCPMP--CGVALTR-KKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRK----GYRGIKRD  296 (374)
T ss_pred             CCcEEEECcccccCCCcC--eEEEEEE-chhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHh----CHHHHHHH
Confidence            34667889999988 555  8999988 46666553321111     122222211  1122222321    33456667


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCe
Q 024997          154 YNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARF  233 (259)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~  233 (259)
                      .++..+..+++.+.|++.+.             -....|.. ..+.+..+.  .+.    +. .|..+.+      .++.
T Consensus       297 ~~~~~~~a~~l~~~l~~~~~-------------~~~~~p~~-~~V~f~~~~--~~~----~~-~~w~l~~------~~~~  349 (374)
T PLN03032        297 VQHCMRNAHYLKDRLTEAGL-------------TCRLNELS-STVVFERPM--DEA----FI-KKWQLAC------EGDI  349 (374)
T ss_pred             HHHHHHHHHHHHHHHHhCCC-------------cEEECCCc-eEEEEcCCC--cHh----Hh-heeeecc------cCCE
Confidence            77888888888888887541             11223333 223333321  121    21 3554443      1258


Q ss_pred             EEEEeec--ChhhHHHHHHHHHH
Q 024997          234 VRLSLLK--SQDDFDLLLHRLDE  254 (259)
Q Consensus       234 ~Ris~~~--~~~~~~~~~~~l~~  254 (259)
                      +|+.+..  +.+.+++.++-|++
T Consensus       350 ~hi~vm~~~~~~~id~fi~dl~~  372 (374)
T PLN03032        350 AHVVVMPNVTVEKLDEFVEELVE  372 (374)
T ss_pred             EEEEECCCCCHHHHHHHHHHHhc
Confidence            9999876  66778888877764

>PRK12566 glycine dehydrogenase; Provisional

Probab=98.55  E-value=4.8e-06  Score=78.63  Aligned_cols=215  Identities=7%  Similarity=-0.003  Sum_probs=123.5

Q ss_pred             ccChhhhcccCC---CCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc-CCCCCCCCCCCCCeEEEecccc
Q 024997           22 EGEANLWGNASS---DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF-WPHFAPIPAPADEELMIFTISK   92 (259)
Q Consensus        22 ~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~-~~~~~~~~~~~~~~i~~~S~SK   92 (259)
                      .+|+++|++.++   +++.+|.+++|++-.+...     .++|+++|+.+++|.+.. +......+...+.+++.+++.|
T Consensus       625 ~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~s~HK  704 (954)
T PRK12566        625 NVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGADVSHMNLHK  704 (954)
T ss_pred             CcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCCCEEEecCCc
Confidence            578899999985   5778888888887766433     388999999999999883 2222222245667999999999


Q ss_pred             ccCC----CcceEEEEEecCHHHHHHHHHhh---------hhhcCCCCHHHH----HHHHHHHHHHHhcCCcchHHHHHH
Q 024997           93 LTGH----AGSRFGWAVIKDEAVYQRMSAYI---------SLNTMGVSRECQ----LRAFKLLKVVLEDGGNNIFEFGYN  155 (259)
Q Consensus        93 ~~g~----~G~R~G~i~~~~~~~~~~~~~~~---------~~~~~~~~~~~q----~~~~~~l~~~~~~~~~~~~~~~~~  155 (259)
                      .|+.    -|.-+|.+... +++.+.+....         +....+.....|    .++..++...    +.+ +.+..+
T Consensus       705 tf~~P~G~GGP~vG~iav~-~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~l----G~e-Lk~aa~  778 (954)
T PRK12566        705 TFCIPHGGGGPGMGPIGVR-AHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMM----GPQ-LADASE  778 (954)
T ss_pred             ccCcCccCCCCccchhhhh-hhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHH----CHH-HHHHHH
Confidence            8852    24446776666 46666554321         001111111122    2233333321    222 333333


Q ss_pred             HHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCC--eeEEEecC---C---Cc-hHHHHHHHHHcCeeeecCCc
Q 024997          156 TMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSP--AYAWVKCE---R---EE-DKDCYGILKAAKIIGREGKK  226 (259)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~---~~-~~~~~~ll~~~gi~~~~g~~  226 (259)
                      .-..+..++.+.|++...  +           ...++.+.  .-..+++.   .   .+ .+..++|+ ++||..-- ..
T Consensus       779 ~ailnAnYla~rL~~~~~--v-----------~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~-d~Gihapt-~~  843 (954)
T PRK12566        779 VAILSANYLANQLGGAFP--V-----------LYRGRNERVAHECILDLRPLKAQTGISEEDVAKRLM-DYGFHAPT-MS  843 (954)
T ss_pred             HHHHHHHHHHHHhHhhCC--C-----------CcCCCCCCeeeEEEEEccccccccCCCHHHHHHHHH-HCCcEEeE-Ee
Confidence            334566677777765221  1           11111111  11112222   1   22 34555555 88997543 34


Q ss_pred             ccCCCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          227 FRAEARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       227 f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      |. ..+.+|++..-  ++++++..++.++++.++
T Consensus       844 fP-v~~~LmIepTE~eskeEIDrf~eAL~~I~~e  876 (954)
T PRK12566        844 FP-VPGTLMVEPTESESKAELDRFVEAMLSIRAE  876 (954)
T ss_pred             ec-cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence            44 36899999854  889999999999877653

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.50  E-value=1.7e-05  Score=75.35  Aligned_cols=226  Identities=10%  Similarity=-0.009  Sum_probs=125.1

Q ss_pred             hhhhccCccc------ccccChhhhcccCC---CCceEEEEcCCCCCChhhH------HHhhcCCCcEEEeeccccC-CC
Q 024997           10 QTDYFESVDY------KFEGEANLWGNASS---DTHLVEFVTAPNNPDGQMN------KAVLKGPYAKSIYDHAYFW-PH   73 (259)
Q Consensus        10 ~~~~~g~~~~------~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~------~~la~~~~~~vi~De~y~~-~~   73 (259)
                      .+...|.++.      ...+|+++|++.++   +++++|++++||| +|.+-      .++|+++|.++++|.++.. ..
T Consensus       594 sa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~  672 (939)
T TIGR00461       594 SAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQV  672 (939)
T ss_pred             HHHHCCCEEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCC
Confidence            3555565542      24688999999995   4889999999999 88864      3889999999999998831 22


Q ss_pred             CCCCCCCCCCeEEEeccccccC----CCcceEEEEEecCHHHHHHHHHhhh---------------hhcCCCCH-HHHHH
Q 024997           74 FAPIPAPADEELMIFTISKLTG----HAGSRFGWAVIKDEAVYQRMSAYIS---------------LNTMGVSR-ECQLR  133 (259)
Q Consensus        74 ~~~~~~~~~~~i~~~S~SK~~g----~~G~R~G~i~~~~~~~~~~~~~~~~---------------~~~~~~~~-~~q~~  133 (259)
                      ....++..+-+++.+|..|.|+    .-|=-+|++.+. +++...+-....               ....+... .....
T Consensus       673 ~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr-~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~  751 (939)
T TIGR00461       673 GLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-SHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPI  751 (939)
T ss_pred             CCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEh-hhchhhcCCCcccccccCCCCccccccccccccCcHHHHHH
Confidence            2222345667999999999654    122238999988 566655431100               00001111 11111


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCC-ee-EEEecCC------C
Q 024997          134 AFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSP-AY-AWVKCER------E  205 (259)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~------~  205 (259)
                      +...+...    +.+-+.+.-+.--.+..++.+.|++...    .+.+         .+.+. ++ +.++++.      .
T Consensus       752 a~~yi~~l----G~~GL~~~a~~ailnAnYl~~rL~~~~~----~l~~---------~~~~~~~hEfv~~~~~~~~~~g~  814 (939)
T TIGR00461       752 SWMYIKMM----GNEGLPKASVVAILNANYMATRLKDHYP----ILFV---------GTLKHVAHECILDLRPLKAKTGI  814 (939)
T ss_pred             HHHHHHHH----CHHHHHHHHHHHHHHHHHHHHHhhccCc----cccc---------CCCCceeEEEEEeccchhhhcCC
Confidence            22222221    2222333344444566666777764221    0000         00111 11 2334441      1


Q ss_pred             c-hHHHHHHHHHcCeeeecCCcccCCC-CeEEEEeecChhhHHHHHHHHHHHh
Q 024997          206 E-DKDCYGILKAAKIIGREGKKFRAEA-RFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       206 ~-~~~~~~ll~~~gi~~~~g~~f~~~~-~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      . .+..++++ ++|+..-. ..|...+ -.+|.+-..++++++..++.+.++-
T Consensus       815 ~~~dIakrL~-d~G~hapt-~~~pv~g~lmiepTE~eskeelD~f~~al~~I~  865 (939)
T TIGR00461       815 EAIDVAKRLQ-DYGFHAPT-LSFPVPGTLMVEPTESESLEELDRFCDAMIAIK  865 (939)
T ss_pred             CHHHHHHHHH-hCCeeccc-cCCccCCeEEEEeeccCCHHHHHHHHHHHHHHH
Confidence            2 44555555 68997433 3344322 2355555558899998888887653

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=98.47  E-value=7.6e-06  Score=73.84  Aligned_cols=151  Identities=13%  Similarity=0.133  Sum_probs=91.9

Q ss_pred             ccccChhhhcccCC----CCceEEEEc--CCCCCChhhH-----HHhhcCCCcEEEeeccccC-----CCCCC-CCCCCC
Q 024997           20 KFEGEANLWGNASS----DTHLVEFVT--APNNPDGQMN-----KAVLKGPYAKSIYDHAYFW-----PHFAP-IPAPAD   82 (259)
Q Consensus        20 ~~~~d~~~l~~~~~----~~~~~i~i~--~p~NPtG~~~-----~~la~~~~~~vi~De~y~~-----~~~~~-~~~~~~   82 (259)
                      .+.+|+++|++.+.    .+++.+.++  .-++.||.+-     .++|+++|+|+.+|.+|-+     +.... +.+...
T Consensus       244 ~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~  323 (522)
T TIGR03799       244 NNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIER  323 (522)
T ss_pred             CCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchh
Confidence            35789999998873    344433333  4567999997     3899999999999999821     11111 223335


Q ss_pred             CeEEEecccccc-CCCcceEEEEEecCHHHHHHHHHhhhh-----------hcCCCCHHHHH-HHHHHHHHHHhcCCcch
Q 024997           83 EELMIFTISKLT-GHAGSRFGWAVIKDEAVYQRMSAYISL-----------NTMGVSRECQL-RAFKLLKVVLEDGGNNI  149 (259)
Q Consensus        83 ~~i~~~S~SK~~-g~~G~R~G~i~~~~~~~~~~~~~~~~~-----------~~~~~~~~~q~-~~~~~l~~~~~~~~~~~  149 (259)
                      -+.+..|..|.+ +..|  +|.++..++++.+.+.....+           .+...+..... ..-..++..    ...-
T Consensus       324 aDSit~d~HK~l~~P~g--~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~l----G~~G  397 (522)
T TIGR03799       324 ADSVTIDAHKQLYVPMG--AGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHII----GRKG  397 (522)
T ss_pred             CCEEEEChhhcCCcCcc--cEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHH----hHHH
Confidence            578899999954 5555  888888756666655431111           01111221111 122233321    2234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 024997          150 FEFGYNTMKKRWENLSKIISLSNRFSL  176 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~  176 (259)
                      +++..++..+..+++.+.|++.+++.+
T Consensus       398 ~~~ii~~~~~la~~l~~~L~~~~~~el  424 (522)
T TIGR03799       398 YELLIDQSIEKAKYFADLIQQQPDFEL  424 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence            677788888889999999988776543

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK05367 glycine dehydrogenase; Provisional

Probab=98.47  E-value=1.3e-05  Score=76.85  Aligned_cols=232  Identities=7%  Similarity=-0.034  Sum_probs=126.9

Q ss_pred             hhhhhccCccc------ccccChhhhcccCCC---CceEEEEcCCCCCChhh--H---HHhhcCCCcEEEeecccc-CCC
Q 024997            9 EQTDYFESVDY------KFEGEANLWGNASSD---THLVEFVTAPNNPDGQM--N---KAVLKGPYAKSIYDHAYF-WPH   73 (259)
Q Consensus         9 ~~~~~~g~~~~------~~~~d~~~l~~~~~~---~~~~i~i~~p~NPtG~~--~---~~la~~~~~~vi~De~y~-~~~   73 (259)
                      ..+.+.|.++.      ...+|.++|++.+.+   ++.+|++++|++-.+..  +   .++|+++|+++++|.++. +..
T Consensus       605 ~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~  684 (954)
T PRK05367        605 ASAVMAGMKVVVVACDENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQV  684 (954)
T ss_pred             HHHHHCCCEEEEECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhcc
Confidence            34555666542      236778889888843   57788899998764432  2   488999999999999883 111


Q ss_pred             CCCCCCCCCCeEEEeccccccC------CCcceEEEEEecCHHHHHHHHHhhh--------hhcCCCCHHHHHHH----H
Q 024997           74 FAPIPAPADEELMIFTISKLTG------HAGSRFGWAVIKDEAVYQRMSAYIS--------LNTMGVSRECQLRA----F  135 (259)
Q Consensus        74 ~~~~~~~~~~~i~~~S~SK~~g------~~G~R~G~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~q~~~----~  135 (259)
                      ...-+...+-+++.+|..|.|+      .||  +|.+.+. +++...+-....        ....+.+++.|...    .
T Consensus       685 ~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg--~G~l~vr-~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~  761 (954)
T PRK05367        685 GLARPGDIGADVSHLNLHKTFCIPHGGGGPG--VGPIGVK-AHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISW  761 (954)
T ss_pred             CCCChhhcCCCEEEecCcccCCCCcCCCCCc--eEEEeec-ccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHH
Confidence            1111234456889999999964      344  7888887 466554433210        11122233333222    1


Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC---CchHHHHH
Q 024997          136 KLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER---EEDKDCYG  212 (259)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  212 (259)
                      .++...    +.+-+.+..+.--.+..++.+.|++...  +....+.+    .  .....++-+..++.   ...+.+.+
T Consensus       762 ~yi~~~----G~~Glr~~a~~~~~~A~Yl~~~L~~~~~--~~~~~~~~----~--~~~e~i~~~~~~~~~~g~~~~di~k  829 (954)
T PRK05367        762 MYIRMM----GAEGLRQATEVAILNANYIAKRLKDHYP--VLYTGANG----R--VAHECILDLRPLKESTGITVDDIAK  829 (954)
T ss_pred             HHHHHH----CHHHHHHHHHHHHHHHHHHHHHHHhhcC--ccccCCCC----C--cccceEEEeecccccCCCCHHHHHH
Confidence            222211    2222333333344677777777765321  11000000    0  00111122222222   12344455


Q ss_pred             HHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          213 ILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       213 ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      .|.++|+.... ..|.. .+.+||++.-  ++++++..++.++.+..
T Consensus       830 rL~d~G~~~~t-~~~pv-~~~l~i~ptE~~s~~elDr~~~al~~i~~  874 (954)
T PRK05367        830 RLIDYGFHAPT-MSFPV-AGTLMVEPTESESKAELDRFCDAMIAIRA  874 (954)
T ss_pred             HHHHCCCeEee-cCCcc-CCEEEEEeeecCCHHHHHHHHHHHHHHHH
Confidence            55678997654 33543 5789999854  88999999888877654

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=98.44  E-value=1.6e-05  Score=64.04  Aligned_cols=221  Identities=11%  Similarity=0.087  Sum_probs=127.5

Q ss_pred             cccChhhhcccC----C---CCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc-CCCCCCCCCCCCCeEEE
Q 024997           21 FEGEANLWGNAS----S---DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF-WPHFAPIPAPADEELMI   87 (259)
Q Consensus        21 ~~~d~~~l~~~~----~---~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~-~~~~~~~~~~~~~~i~~   87 (259)
                      |.++++...+.+    +   +.+.+.+++.|.---|.+.     +++|+++|+.++..-+|- +.-..+. .....++++
T Consensus       135 y~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~-ke~g~DFiV  213 (382)
T COG1103         135 YKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSG-KEIGADFIV  213 (382)
T ss_pred             eEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccc-cccCCCEEE
Confidence            677776544444    2   3478889999987778777     489999999999999992 2222222 234568999


Q ss_pred             eccccccCCCcceEEEEEecCHHHHHHHHHhh-h------hhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH--
Q 024997           88 FTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI-S------LNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMK--  158 (259)
Q Consensus        88 ~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~-~------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~--  158 (259)
                      +|-.|++. +--.+|.+... ++..+.+.+.. .      .-..+++.-. +-...++.      ...++.++.++..  
T Consensus       214 gSGHKsmA-As~PiGvl~~~-eE~ae~V~r~Sg~~~~~KEvellGCT~rG-apivTlmA------SfP~V~eRVkrWdeE  284 (382)
T COG1103         214 GSGHKSMA-ASAPIGVLAMS-EEWAEIVLRRSGRAFPKKEVELLGCTVRG-APIVTLMA------SFPHVVERVKRWDEE  284 (382)
T ss_pred             ecCccchh-ccCCeeEEeeh-hHHHHHHHhhcccccccceeeeecccccC-chHHHHHh------cCHHHHHHHHHHHHH
Confidence            99999997 55589999999 68888775543 1      0011111111 11112222      1112222222222  


Q ss_pred             -HHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCee-eecCCcccCCCCeEEE
Q 024997          159 -KRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKII-GREGKKFRAEARFVRL  236 (259)
Q Consensus       159 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~-~~~g~~f~~~~~~~Ri  236 (259)
                       +..+.+...|+.++++......|...+.+.+..|.  ++....-.....=++.+-|++.||. ++||.     ..++.+
T Consensus       285 v~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~--f~eIakk~~r~gyFlY~ELK~RgI~GI~~G~-----Tk~~K~  357 (382)
T COG1103         285 VEKARWFVAELEKIGGVKQLGERPKNHDLMKFETPV--FHEIAKKHKRKGYFLYEELKKRGIHGIQPGQ-----TKYFKL  357 (382)
T ss_pred             HHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCch--HHHHHHhCcCCceeeHHHHHhcCccccccCc-----eeEEEE
Confidence             23445566677777654433333333332221111  1100000000123456667788885 44432     468899


Q ss_pred             Eeec-ChhhHHHHHHHHHHHhhh
Q 024997          237 SLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       237 s~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      |+-. +.++++..++.+++++++
T Consensus       358 svyGl~~Eqve~V~~afkeI~ek  380 (382)
T COG1103         358 SVYGLSWEQVEYVVDAFKEIAEK  380 (382)
T ss_pred             EeecCCHHHHHHHHHHHHHHHHh
Confidence            9744 999999999999998875

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=98.43  E-value=0.00011  Score=60.36  Aligned_cols=228  Identities=10%  Similarity=-0.011  Sum_probs=132.7

Q ss_pred             hhhhccCccccc------ccChhhhcccC-CCCceEEEEcCCCCCChhhHH------HhhcCCCcEEEeeccc-cCCCCC
Q 024997           10 QTDYFESVDYKF------EGEANLWGNAS-SDTHLVEFVTAPNNPDGQMNK------AVLKGPYAKSIYDHAY-FWPHFA   75 (259)
Q Consensus        10 ~~~~~g~~~~~~------~~d~~~l~~~~-~~~~~~i~i~~p~NPtG~~~~------~la~~~~~~vi~De~y-~~~~~~   75 (259)
                      +++..|++++..      ....+.+.+.+ ..+++++++++-..-||...+      ++|++|++++++|.+- .+  ..
T Consensus       110 ~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlg--gt  187 (385)
T KOG2862|consen  110 CARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLG--GT  187 (385)
T ss_pred             HHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcC--Cc
Confidence            444556665332      34457777777 458999999999999999874      8999999999999865 21  11


Q ss_pred             CCC-CCCCCeEEEeccccccC-CCcceEEEEEecCHHHHHHHHHhhh-----------------------hhcCCCCHHH
Q 024997           76 PIP-APADEELMIFTISKLTG-HAGSRFGWAVIKDEAVYQRMSAYIS-----------------------LNTMGVSREC  130 (259)
Q Consensus        76 ~~~-~~~~~~i~~~S~SK~~g-~~G~R~G~i~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~  130 (259)
                      .+. +.+..++.....-|++| .+|+  +-+..+ ....++++..+.                       ....-+|...
T Consensus       188 ~F~mDewgVDvaytgSQKaL~aP~GL--siisfS-~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~l  264 (385)
T KOG2862|consen  188 EFEMDEWGVDVAYTGSQKALGAPAGL--SIISFS-DKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQL  264 (385)
T ss_pred             cceehhhcccEEEecchhhcCCCCCc--ceeecC-HHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHH
Confidence            121 45555666666679986 4774  447777 466676665321                       0011122222


Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeC-CCCCeeEEEecCCC-ch-
Q 024997          131 QLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIR-PPSPAYAWVKCERE-ED-  207 (259)
Q Consensus       131 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-  207 (259)
                      -+..-++|....    ++=++...++.++..+.+...|+.++- ..          +..-+ ....-...+..+.. |. 
T Consensus       265 ly~Lr~AL~~I~----eeGL~~~~~rH~e~s~~l~~~l~~~GL-q~----------fv~~e~~rlptvttv~vp~gvDw~  329 (385)
T KOG2862|consen  265 LYSLRAALALIA----EEGLENSWRRHREMSKWLKLSLEALGL-QL----------FVVDEELRLPTVTTVKVPYGVDWK  329 (385)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCc-cc----------eecChhhccCcceeeecCCCCCHH
Confidence            233444444332    234566777888888888888887551 00          11111 11111223333332 54 


Q ss_pred             HHHHHHHHHcCeeeecCCcccCCCCeEEEEeec---ChhhHHHHHHHHHHHhhh
Q 024997          208 KDCYGILKAAKIIGREGKKFRAEARFVRLSLLK---SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       208 ~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~---~~~~~~~~~~~l~~~l~~  258 (259)
                      +.+.++...+++-+-- -.-...+..+||.+..   +.+.++..++.|+..+.+
T Consensus       330 dVv~~~~~~~~vei~g-glg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~  382 (385)
T KOG2862|consen  330 DVVAYAMSHYVVEIGG-GLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR  382 (385)
T ss_pred             HHHHHHHHhcCEEecc-ccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence            4455555443554432 2222245789999743   778889888888877643

>PLN02880 tyrosine decarboxylase

Probab=98.42  E-value=2.3e-05  Score=70.38  Aligned_cols=215  Identities=13%  Similarity=0.084  Sum_probs=123.0

Q ss_pred             ccccChhhhcccCCC------CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc-----CCCCC-CCCCCCC
Q 024997           20 KFEGEANLWGNASSD------THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF-----WPHFA-PIPAPAD   82 (259)
Q Consensus        20 ~~~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~-----~~~~~-~~~~~~~   82 (259)
                      .+.+|++.|++.+.+      .+.+|+-+..+-+||.+-     .++|+++|+|+.+|.+|-     .+.+. .+.+...
T Consensus       218 ~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~  297 (490)
T PLN02880        218 NYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEE  297 (490)
T ss_pred             CCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchh
Confidence            467999999988832      245656666678999986     389999999999999991     11111 1223344


Q ss_pred             CeEEEeccccccCCCcceEEEEEecCHH-HHHHHHHhhhhhcC-----------------CCCHHHHHHHHHH---HHHH
Q 024997           83 EELMIFTISKLTGHAGSRFGWAVIKDEA-VYQRMSAYISLNTM-----------------GVSRECQLRAFKL---LKVV  141 (259)
Q Consensus        83 ~~i~~~S~SK~~g~~G~R~G~i~~~~~~-~~~~~~~~~~~~~~-----------------~~~~~~q~~~~~~---l~~~  141 (259)
                      -+-+..+++|.++ .-.-+|++...+.+ +...+.....++..                 ....+.   ++.+   ++..
T Consensus       298 aDSit~d~HKwl~-~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~---alklw~~l~~~  373 (490)
T PLN02880        298 ADSFNMNAHKWFL-TNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFR---SLKLWMVLRLY  373 (490)
T ss_pred             cCEEEECchhhcC-CCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCCccc---HHHHHHHHHHh
Confidence            5778999999985 55668888877533 22333221111100                 000110   1222   2321


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC----------chHHHH
Q 024997          142 LEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE----------EDKDCY  211 (259)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~  211 (259)
                          +.+-+.++.++..+..+++.+.+++.+++.+.            .+++.++ +.+.++..          +.+...
T Consensus       374 ----G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~------------~~~~~~i-v~Fr~~~~~~~~~~~~~~n~~l~~  436 (490)
T PLN02880        374 ----GVENLQSYIRNHIKLAKEFEQLVAQDSRFEVV------------TPRIFSL-VCFRLVPPKNNEDNGNKLNHDLLD  436 (490)
T ss_pred             ----CHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe------------cCCceEE-EEEEEeCCCCChhhHHHHHHHHHH
Confidence                33345555555568888888888776653221            1223333 23333211          123344


Q ss_pred             HHHHHcCeeeecCCcccCCCCeEEEEeec---ChhhHHHHHHHHHHHhh
Q 024997          212 GILKAAKIIGREGKKFRAEARFVRLSLLK---SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       212 ~ll~~~gi~~~~g~~f~~~~~~~Ris~~~---~~~~~~~~~~~l~~~l~  257 (259)
                      ++.++..+.+.+ ..+ .+..++|+|+..   ++++++.+++.|.+..+
T Consensus       437 ~l~~~g~~~v~~-t~~-~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~  483 (490)
T PLN02880        437 AVNSSGKIFISH-TVL-SGKYVLRFAVGAPLTEERHVTAAWKVLQDEAS  483 (490)
T ss_pred             HHHhCCCEEEEE-EEE-CCEEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            444444555544 222 245799999865   56889999998877543

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.39  E-value=9.2e-06  Score=68.94  Aligned_cols=139  Identities=13%  Similarity=0.069  Sum_probs=94.9

Q ss_pred             cChhhhcccCCC---CceEEEEcCCCC-CChhhH---------HHhhcCCCcEEEeeccc--cCCCCCC-----CCCCCC
Q 024997           23 GEANLWGNASSD---THLVEFVTAPNN-PDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAP-----IPAPAD   82 (259)
Q Consensus        23 ~d~~~l~~~~~~---~~~~i~i~~p~N-PtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~-----~~~~~~   82 (259)
                      -|...|++.++.   ...+ +|..|-- --|.+.         .++|+++|+++|.||++  |+.....     +.-.+|
T Consensus       191 nd~t~l~k~~~~h~~~IaA-VIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PD  269 (433)
T KOG1401|consen  191 NDSTALEKLFESHKGEIAA-VIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPD  269 (433)
T ss_pred             CCHHHHHHHHHhCCCceEE-EEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCc
Confidence            346677777733   3466 5556643 444443         28899999999999998  4322111     111233


Q ss_pred             CeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh---hhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 024997           83 EELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS---LNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKK  159 (259)
Q Consensus        83 ~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  159 (259)
                          +.++.|.++ .|+.+|...+. .++.+.+..-..   ..+++.+++.-.++...++...   ..+++++..+.-+.
T Consensus       270 ----I~t~aK~L~-gGlPigA~~v~-~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~---~~e~~k~vs~~~k~  340 (433)
T KOG1401|consen  270 ----ITTVAKPLG-GGLPIGATGVR-DKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELK---DPETLKNVSKIGKE  340 (433)
T ss_pred             ----ceeehhhcc-CCceeEEEeeh-HHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHc---CHHHHHHHHHHHHH
Confidence                788999998 89999999999 599998876444   6678889998888888888763   33565656666666


Q ss_pred             HHHHHHHHHHhc
Q 024997          160 RWENLSKIISLS  171 (259)
Q Consensus       160 ~~~~~~~~l~~~  171 (259)
                      .++.+.+.+.+.
T Consensus       341 L~~~l~e~~~~~  352 (433)
T KOG1401|consen  341 LRKLLDEYLKKT  352 (433)
T ss_pred             HHHHHHHHhccC
Confidence            666666666543

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=98.33  E-value=8e-05  Score=64.06  Aligned_cols=205  Identities=14%  Similarity=0.045  Sum_probs=130.9

Q ss_pred             CCCceEEEEcCCCCCChhhHHHhhcCCCcEEEeeccccCCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHH
Q 024997           33 SDTHLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAYFWPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAV  111 (259)
Q Consensus        33 ~~~~~~i~i~~p~NPtG~~~~~la~~~~~~vi~De~y~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~  111 (259)
                      +++.+.+.+|+-.-.||..++++.+.++.++|+|.+-   .+.+.+ +..+-.++..+.=|.+|.+|  ++.++.. +++
T Consensus       141 ~~d~~~v~~t~NETstGv~~~~~~~~~~~llvvD~sS---~~~s~pid~~~~dvi~agsQKnlgP~G--ltvvivs-~~a  214 (364)
T PRK12462        141 DARAPFRHYVSNETVEGLQFPDAAGLPDSPLIADMSS---DFMSRPFDVEAYGMVYAHAQKNLGPAG--VTVAIIR-RAL  214 (364)
T ss_pred             CCCCcEEEEccCCCCceEecCcccccCCCeEEEEcCc---hhhCCCCChHHccEEEeeccccCCCCc--eEEEEEC-HHH
Confidence            3456675666555689999887777779999999854   111111 11122778888899999999  7788888 577


Q ss_pred             HHHHHHh-------h----hhhc-CCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q 024997          112 YQRMSAY-------I----SLNT-MGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEI  179 (259)
Q Consensus       112 ~~~~~~~-------~----~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  179 (259)
                      +++....       .    .... .-++...-+++...++.+++.  ..=++...++.++..+.+++.+++..++-....
T Consensus       215 l~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e--~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~  292 (364)
T PRK12462        215 LERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDE--IGGVHAMRDINARKAAMLYATLDALNEVIDCHA  292 (364)
T ss_pred             HhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence            7654331       1    1112 234455556666666654321  012566778888889999999988764221111


Q ss_pred             cccccccceeeCCCCCeeEEEecCCCc-hHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHHHHHHHHHHh
Q 024997          180 APQYCTYFKKIRPPSPAYAWVKCEREE-DKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDLLLHRLDELI  256 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~~~~~l~~~l  256 (259)
                               ....++-+-+.+++.+.. .+.+.+.++++|+....|..-   -|.+|+|+=  .+.+.++.+++-++++-
T Consensus       293 ---------~~~~RS~mnv~f~~~~~~l~~~f~~~a~~~gl~~lkGhr~---vgg~Ras~yna~~~e~v~~L~~fm~~f~  360 (364)
T PRK12462        293 ---------HRAARSTMNVAFRFRQPRLDTLFKEQSTEAGFCGLSGHRS---IGGIRASLYNAVSEQAVSRLCAFLKDFA  360 (364)
T ss_pred             ---------ChhhcCcceEEEEcCCHHHHHHHHHHHHHCCCccccCCcc---cCceEEEcCCCCCHHHHHHHHHHHHHHH
Confidence                     113455666777765542 456667777899988776533   255999983  38888888888888775


Q ss_pred             h
Q 024997          257 S  257 (259)
Q Consensus       257 ~  257 (259)
                      +
T Consensus       361 ~  361 (364)
T PRK12462        361 I  361 (364)
T ss_pred             H
Confidence            4

>PLN02590 probable tyrosine decarboxylase

Probab=98.32  E-value=7.8e-05  Score=67.47  Aligned_cols=218  Identities=9%  Similarity=0.079  Sum_probs=123.2

Q ss_pred             ccccChhhhcccCCC------CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc--c---CCCCCCC-CCCCC
Q 024997           20 KFEGEANLWGNASSD------THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY--F---WPHFAPI-PAPAD   82 (259)
Q Consensus        20 ~~~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y--~---~~~~~~~-~~~~~   82 (259)
                      .+.+|+++|++.+.+      .+.+|+-+..+-+||.+=     .++|+++|+|+.+|.+|  +   .+..... .+...
T Consensus       266 ~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~  345 (539)
T PLN02590        266 NYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIEN  345 (539)
T ss_pred             CCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCcc
Confidence            368999999988832      245655555677899885     48999999999999999  2   1222111 12333


Q ss_pred             CeEEEeccccccCCCcceEEEEEecCH-HHHHHHHHhhhhh----------------cCCCCH-HHHHHHHHHHHHHHhc
Q 024997           83 EELMIFTISKLTGHAGSRFGWAVIKDE-AVYQRMSAYISLN----------------TMGVSR-ECQLRAFKLLKVVLED  144 (259)
Q Consensus        83 ~~i~~~S~SK~~g~~G~R~G~i~~~~~-~~~~~~~~~~~~~----------------~~~~~~-~~q~~~~~~l~~~~~~  144 (259)
                      -.=+....+|.+. ...-+|.+...++ .+.+.+.....++                +...+. +.....-..++..   
T Consensus       346 ADSit~D~HK~l~-~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~---  421 (539)
T PLN02590        346 ADSFNMNAHKWLF-ANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLY---  421 (539)
T ss_pred             CCEEEECchhhcC-cCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHH---
Confidence            3456778899986 5566888887754 3334332211111                111111 1111111122221   


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC--Cc-------hHHHHHHHH
Q 024997          145 GGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--EE-------DKDCYGILK  215 (259)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~ll~  215 (259)
                       +.+-+.+..++..+..+++.+.+++.+.+.+             ..+..-.-++++...  .+       ...+.+.+.
T Consensus       422 -G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel-------------~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~  487 (539)
T PLN02590        422 -GSENLRNFIRDHVNLAKHFEDYVAQDPSFEV-------------VTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVN  487 (539)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE-------------ecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence             2345667777888888888888887765332             222222222333221  01       122333333


Q ss_pred             HcCeeeecCCcccCCCCeEEEEeec---ChhhHHHHHHHHHHHh
Q 024997          216 AAKIIGREGKKFRAEARFVRLSLLK---SQDDFDLLLHRLDELI  256 (259)
Q Consensus       216 ~~gi~~~~g~~f~~~~~~~Ris~~~---~~~~~~~~~~~l~~~l  256 (259)
                      +.|......... .+..++|+++..   ++++++.+++.|.+.-
T Consensus       488 ~~G~~~vs~t~~-~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a  530 (539)
T PLN02590        488 STGKIFISHTAL-SGKFVLRFAVGAPLTEEKHVTEAWQIIQKHA  530 (539)
T ss_pred             hCCCEEEEeeEE-CCEEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence            445544332222 245689999965   7888999999988754

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=98.27  E-value=0.00016  Score=62.71  Aligned_cols=224  Identities=13%  Similarity=0.064  Sum_probs=132.6

Q ss_pred             hhhhhccCc-c----ccc--ccChhhhcccCCCCceEEEEcCCCCCChhhHH--HhhcC-CCcEEEeeccc-cCCCCCCC
Q 024997            9 EQTDYFESV-D----YKF--EGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--AVLKG-PYAKSIYDHAY-FWPHFAPI   77 (259)
Q Consensus         9 ~~~~~~g~~-~----~~~--~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--~la~~-~~~~vi~De~y-~~~~~~~~   77 (259)
                      .+++..|.. +    .+|  .+|+++++.    + +.+++++---.||...+  +++++ ++.++|+|.+- ++..... 
T Consensus        99 eia~~~g~~~v~~l~~~~g~~~~~~~ve~----~-~~v~~vhnETSTGv~npv~~i~~~~~~~lliVDavSs~g~~~l~-  172 (374)
T TIGR01365        99 DVTKQLKLPDVRVLEAEYGKLPDLKKVDF----K-NDVVFTWNGTTSGVRVPNGDFIPADREGLTICDATSAAFAQDLD-  172 (374)
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCCHHHcCC----C-CCEEEecCCCchheeccccccccccCCCcEEEEccchhcCCCCC-
Confidence            444556662 3    233  466666662    1 12355655568888874  55654 58999999855 3211111 


Q ss_pred             CCCCCCeEEEeccccccCC-CcceEEEEEecCHHHHHHHHHhh----------------------hhhcCCCC-HHHHHH
Q 024997           78 PAPADEELMIFTISKLTGH-AGSRFGWAVIKDEAVYQRMSAYI----------------------SLNTMGVS-RECQLR  133 (259)
Q Consensus        78 ~~~~~~~i~~~S~SK~~g~-~G~R~G~i~~~~~~~~~~~~~~~----------------------~~~~~~~~-~~~q~~  133 (259)
                        ..+-++++.|.-|.+++ ||  +|++++. ++.+++.....                      ...+...+ ....++
T Consensus       173 --~d~iDv~~tgsQK~L~~ppG--ls~v~vs-~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a  247 (374)
T TIGR01365       173 --YHKLDVVTFSWQKVLGGEGA--HGMLILS-PRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVED  247 (374)
T ss_pred             --hhHCcEEEEechhccCCCCc--eEEEEEC-HHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHH
Confidence              22368889999999964 66  7788888 57766654210                      01112222 222333


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-------c
Q 024997          134 AFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-------E  206 (259)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  206 (259)
                      +..+++...+.   .=++.+.++.+++.+.+++.+++++.+.+.  ..       .-...+...+.+.++..       +
T Consensus       248 ~~~~l~~i~~e---gGle~~~~Rh~~~a~~l~~~l~~lg~l~~~--~~-------~~~~rS~tvt~v~~~~~~~~~~~~~  315 (374)
T TIGR01365       248 WLDALKWAESI---GGLKPLIARADDNLAVLEAFVAKNNWIHFL--AE-------TPEIRSNTSVCLKVVDPAIDALDED  315 (374)
T ss_pred             HHHHHHHHHHc---cCHHHHHHHHHHHHHHHHHHHHHCCCcccC--CC-------ChhhcCCCeEEEEeCCccccccccc
Confidence            44445432221   126778899999999999999988742211  10       00112333344444221       1


Q ss_pred             -----hHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHh
Q 024997          207 -----DKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       207 -----~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l  256 (259)
                           .+.+...++++||.+.+|..--. +..+||+...  +.++++.+++.|.=++
T Consensus       316 ~~~~~~~~~~~~l~~~gi~i~~G~~~~~-~~~fRIg~~G~i~~~di~~l~~~l~~~~  371 (374)
T TIGR01365       316 AQADFAKELISTLEKEGVAYDIGSYRDA-PSGLRIWCGATVEKSDLECLCPWLDWAF  371 (374)
T ss_pred             hhhHHHHHHHHHHHHCCEEEeccccccC-CCceEEecCCcCCHHHHHHHHHHHHHHH
Confidence                 45677788888999988765433 4789999644  8999999999886443

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK05367 glycine dehydrogenase; Provisional

Probab=98.22  E-value=0.00014  Score=69.96  Aligned_cols=191  Identities=13%  Similarity=0.080  Sum_probs=109.2

Q ss_pred             CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEeccccc-----cCCCcceEEEE
Q 024997           35 THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKL-----TGHAGSRFGWA  104 (259)
Q Consensus        35 ~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~-----~g~~G~R~G~i  104 (259)
                      ++..+++.+| |-+|.+.     .++|+++|+++++|-..........++..+-+|+++|..|.     ||.||  .|++
T Consensus       206 ~~~~vlvq~p-~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~GGP~--aGfl  282 (954)
T PRK05367        206 DVFGVLLQYP-GTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFGGPH--AAYF  282 (954)
T ss_pred             cEEEEEEecC-CCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCCCCCCCC--EEEE
Confidence            4555555554 7899887     38899999999998633211122223555679999999998     77787  9999


Q ss_pred             EecCHHHHHHHHHhh--------------------------hhhcCCCCHHHH-HHHHHH--HHHHHhcCCcchHHHHHH
Q 024997          105 VIKDEAVYQRMSAYI--------------------------SLNTMGVSRECQ-LRAFKL--LKVVLEDGGNNIFEFGYN  155 (259)
Q Consensus       105 ~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~q-~~~~~~--l~~~~~~~~~~~~~~~~~  155 (259)
                      ++. +++...+....                          ...+.++.+.+. .++.+.  +..    ....=+.+..+
T Consensus       283 avr-~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~----~g~~Gl~~Ia~  357 (954)
T PRK05367        283 AVR-DAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVY----HGPEGLKAIAR  357 (954)
T ss_pred             EEC-HHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHH----HhhhhHHHHHH
Confidence            999 57776652110                          001112211111 111111  111    01222455566


Q ss_pred             HHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEE
Q 024997          156 TMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVR  235 (259)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~R  235 (259)
                      +...+..++.+.|+..+ +.+.  .          .+..+ -+.++++. +.+.+.+.|.++||.++.   .  ..+.+|
T Consensus       358 ~~~~la~~l~~~L~~~G-~~~~--~----------~~~f~-~~~~~~~~-~~~~i~~~l~~~gi~~~~---~--~~~~l~  417 (954)
T PRK05367        358 RVHRLAAILAAGLRALG-LEVV--H----------DSFFD-TLTVEVGG-DAAAVLARALAAGINLRR---V--DDDHVG  417 (954)
T ss_pred             HHHHHHHHHHHHHHhcC-cccC--C----------CCCCC-eEEEeCCC-CHHHHHHHHHHCCceecc---c--cCCEEE
Confidence            67777777777776532 2111  0          11111 22333432 345555556678998843   1  146799


Q ss_pred             EEeec--ChhhHHHHHHHHH
Q 024997          236 LSLLK--SQDDFDLLLHRLD  253 (259)
Q Consensus       236 is~~~--~~~~~~~~~~~l~  253 (259)
                      +|+..  ++++++.+++.|.
T Consensus       418 is~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        418 ISLDETTTREDLAALLAVFG  437 (954)
T ss_pred             EEecccCCHHHHHHHHHHHc
Confidence            99854  8899999999886

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=2e-05  Score=66.52  Aligned_cols=210  Identities=11%  Similarity=0.114  Sum_probs=121.6

Q ss_pred             ccChhhhcccCCC---------C----ceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc-c---CCCCCCCC-
Q 024997           22 EGEANLWGNASSD---------T----HLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY-F---WPHFAPIP-   78 (259)
Q Consensus        22 ~~d~~~l~~~~~~---------~----~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y-~---~~~~~~~~-   78 (259)
                      ..|++.|+..+.+         +    .++|++..-.-+||.+.+     ++..+|...+|.||.| |   +..+..+. 
T Consensus       207 hndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvte  286 (467)
T KOG1358|consen  207 HNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTE  286 (467)
T ss_pred             CCCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccc
Confidence            4666777655521         1    356677777888999884     7888999999999999 5   22221111 


Q ss_pred             ----CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh---hhcCCCCHHHHHHHHHHHHHHHhcCCcchHH
Q 024997           79 ----APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS---LNTMGVSRECQLRAFKLLKVVLEDGGNNIFE  151 (259)
Q Consensus        79 ----~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~  151 (259)
                          ...+-+++++|++-+++..|   |+.++.  .++-...+...   -.+.+.++..-.++..++..      .++-.
T Consensus       287 H~~v~~~~iDiv~~sm~~alas~G---gFc~G~--~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i------~~~~p  355 (467)
T KOG1358|consen  287 HFGVPITDIDIVTASMETALASGG---GFCAGK--SFIADHQRLSGSGYCFSASLPPYLAGAAIKAILI------EEWNP  355 (467)
T ss_pred             cCCCCccceeeeeecccccccccC---ceeecc--eeeEeeeeccccceeeeccCchhhhhhHHHHHHH------HhhCc
Confidence                24566889999999998777   888875  33332333221   22334444444444444442      12222


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeC-CCCCeeEEEecCCC------c----hHHHHHHHHHcCee
Q 024997          152 FGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIR-PPSPAYAWVKCERE------E----DKDCYGILKAAKII  220 (259)
Q Consensus       152 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~----~~~~~~ll~~~gi~  220 (259)
                      +..+.+++....+...|++..+             +.... +.+++ +.+.+...      +    .+.+...+.+ |+.
T Consensus       356 ~~~~~L~~k~~~~H~~l~~~s~-------------~~v~~~~~SPi-~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~l  420 (467)
T KOG1358|consen  356 EIVQPLRAKVAKFHAALSSNSG-------------FIVSGSPESPI-IHLQLERSYGSREKEEKLLEEIVDKCIAE-GVL  420 (467)
T ss_pred             chhhhhhccccccchhhhcCCc-------------eEEecCcCCce-eeeeecccccchHHHHHHHHHHHHHHHhh-cce
Confidence            2455566666666666665332             22222 33333 23333331      1    2344455544 777


Q ss_pred             eecCCcc---c--CCCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          221 GREGKKF---R--AEARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       221 ~~~g~~f---~--~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      +.-....   .  +-+..+||++..  ++++++.+.+.|+++-+
T Consensus       421 l~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~  464 (467)
T KOG1358|consen  421 LTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVAS  464 (467)
T ss_pred             ehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            6543322   1  124679999966  99999999999988754

>PRK15029 arginine decarboxylase; Provisional

Probab=98.07  E-value=0.00048  Score=64.58  Aligned_cols=142  Identities=12%  Similarity=0.106  Sum_probs=75.7

Q ss_pred             ChhhhcccC--CCCce--------EEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc-----cCCCCC---CCC--
Q 024997           24 EANLWGNAS--SDTHL--------VEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY-----FWPHFA---PIP--   78 (259)
Q Consensus        24 d~~~l~~~~--~~~~~--------~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y-----~~~~~~---~~~--   78 (259)
                      +++.+++.+  .+..+        ++++++|+. -|.++     .++|+++|+.+++|||+     |.+.+.   .+.  
T Consensus       291 ~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~  369 (755)
T PRK15029        291 QPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGE  369 (755)
T ss_pred             CHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeCHHHHHHHHHhcCCeEEEECccccccccCcccccccccccc
Confidence            367777776  23333        889999975 35554     48999999999999998     222222   120  


Q ss_pred             --CCCCC-eEEEeccccccCCCcceEE-EEEecCH--HH-HHHHHHhhhhh-cCCCCHHHHHHHHHHHHHHHhcCCcchH
Q 024997           79 --APADE-ELMIFTISKLTGHAGSRFG-WAVIKDE--AV-YQRMSAYISLN-TMGVSRECQLRAFKLLKVVLEDGGNNIF  150 (259)
Q Consensus        79 --~~~~~-~i~~~S~SK~~g~~G~R~G-~i~~~~~--~~-~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~  150 (259)
                        ...+- ++++.|..|+++  ++..| ++...+.  .+ .++++...... +.++|-+..+ .+..-...+++   ..-
T Consensus       370 ~~~~~Gad~~vvqStHKtL~--alTQaS~LHv~~~~~~id~~r~~~~l~~~qSTSPSY~LmA-SLD~ar~~m~~---~~G  443 (755)
T PRK15029        370 PGDHNGPTVFATHSTHKLLN--ALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICA-SNDVAVSMMDG---NSG  443 (755)
T ss_pred             ccccCCCceEEEEchhhccc--chhhhhhheeCCCccccCHHHHHHHHHHHcCCCcHHHHHH-HHHHHHHHHhh---hhh
Confidence              10223 499999999984  34344 5666432  11 13455544433 3334433332 22222222211   012


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Q 024997          151 EFGYNTMKKRWENLSKIISLSN  172 (259)
Q Consensus       151 ~~~~~~~~~~~~~~~~~l~~~~  172 (259)
                      .+..+...++...+++.++++.
T Consensus       444 ~~l~~~~i~~~~~~r~~l~~~~  465 (755)
T PRK15029        444 LSLTQEVIDEAVDFRQAMARLY  465 (755)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc
Confidence            2234445555555666665543

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=98.07  E-value=0.00044  Score=56.75  Aligned_cols=178  Identities=12%  Similarity=0.126  Sum_probs=105.7

Q ss_pred             HhhcCCCcEEEeeccc--c---CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHH--hhhhhcCCC
Q 024997           54 AVLKGPYAKSIYDHAY--F---WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSA--YISLNTMGV  126 (259)
Q Consensus        54 ~la~~~~~~vi~De~y--~---~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~--~~~~~~~~~  126 (259)
                      +..+.+|-+.|.||+.  |   +.+++.+. ..+-+--+-++.|..| .|..++.++.. +++.+++..  .....+++.
T Consensus       237 ~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq-~y~fiPDIVtmgKpmG-NGhPVa~Vatt-keIA~Af~atgv~YFNTyGG  313 (452)
T KOG1403|consen  237 DAVRSAGGVCIADEVQVGFGRVGSHYWAFQ-TYNFIPDIVTMGKPMG-NGHPVAAVATT-KEIAQAFHATGVEYFNTYGG  313 (452)
T ss_pred             HHHhcCCCeEEeehhhhcccccchhhhhhh-hhccccchheecccCC-CCCeeeEEecc-HHHHHHhccccceehhccCC
Confidence            6678899999999998  5   33444442 2222334778899998 99999999999 799999976  334556888


Q ss_pred             CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCC--CeeEEEecCC
Q 024997          127 SRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPS--PAYAWVKCER  204 (259)
Q Consensus       127 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  204 (259)
                      +|.+=+++.+.++..    .++.+++..+++-+....+...++.-               ..++....  |.|+-+++-.
T Consensus       314 nPVsCAv~laVm~v~----e~E~Lq~ha~~vG~~L~~lL~~~k~k---------------h~~IGDvRGvGLFiGIdLVk  374 (452)
T KOG1403|consen  314 NPVSCAVGLAVMRVC----EDENLQEHAQQVGEKLEVLLRRLKQK---------------HECIGDVRGVGLFIGIDLVK  374 (452)
T ss_pred             CchhHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHHHHHhhh---------------ccceeccccceEEEeeeeec
Confidence            888888888888754    22334444444444444444443321               22333333  4454454421


Q ss_pred             -C-----c----hHHHHHHHHHcCeeeecCCcccCCCCeEEEEe--ecChhhHHHHHHHHHHHh
Q 024997          205 -E-----E----DKDCYGILKAAKIIGREGKKFRAEARFVRLSL--LKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       205 -~-----~----~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~--~~~~~~~~~~~~~l~~~l  256 (259)
                       .     +    .-.+.++-+.++|++..   =++..+-+.|-.  ..++++.++.+..|.++|
T Consensus       375 D~~tRtP~tk~A~~~v~rlke~y~VLlsa---DGPh~NilKiKPPmCFneena~e~v~~ld~iL  435 (452)
T KOG1403|consen  375 DRKTRTPDTKEAHWVVNRLKELYRVLLSA---DGPHRNILKIKPPMCFNEENADEFVLGLDEIL  435 (452)
T ss_pred             ccccCCCcHHHHHHHHHHHHHhhhEEEec---CCCCCceeecCCCcccChhhHHHHHHHHHHHH
Confidence             1     1    23355566667788765   122234444432  125566666666666554

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=98.05  E-value=0.00022  Score=62.32  Aligned_cols=212  Identities=16%  Similarity=0.134  Sum_probs=120.2

Q ss_pred             ccChhhhcccCCC----CceEEEEcCCCCCChh-hH--------HHhhcCCCcEEEeecc------cc----CCCC--CC
Q 024997           22 EGEANLWGNASSD----THLVEFVTAPNNPDGQ-MN--------KAVLKGPYAKSIYDHA------YF----WPHF--AP   76 (259)
Q Consensus        22 ~~d~~~l~~~~~~----~~~~i~i~~p~NPtG~-~~--------~~la~~~~~~vi~De~------y~----~~~~--~~   76 (259)
                      .+|++.|++.+++    +...+...--+|-.|. .+        .++|+++|+.++.|.+      ||    ++..  .+
T Consensus       166 ~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~s  245 (467)
T TIGR02617       166 NFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWS  245 (467)
T ss_pred             CcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCC
Confidence            5678889998853    2222111112354443 44        3899999999999954      43    1111  11


Q ss_pred             CCC-----CCCCeEEEeccccccCCC-cceEEEEEecCH---HHHHHHHHhhh-----hhcCCCCHHHHHHHHHHHHHHH
Q 024997           77 IPA-----PADEELMIFTISKLTGHA-GSRFGWAVIKDE---AVYQRMSAYIS-----LNTMGVSRECQLRAFKLLKVVL  142 (259)
Q Consensus        77 ~~~-----~~~~~i~~~S~SK~~g~~-G~R~G~i~~~~~---~~~~~~~~~~~-----~~~~~~~~~~q~~~~~~l~~~~  142 (259)
                      +..     ...-+.+..|+||-+|.+ |   |+++++++   ++.++++...-     .+..+.+.-...+++..|.+. 
T Consensus       246 i~eI~rE~~~~aDsvt~slsKglgApvG---g~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~-  321 (467)
T TIGR02617       246 IEQITRETYKYADMLAMSAKKDAMVPMG---GLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDG-  321 (467)
T ss_pred             HHHHHHHhhccCCEEEEEcCCCCCCccc---ceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhc-
Confidence            111     134467899999999877 6   78888876   44444444221     112345555555565556542 


Q ss_pred             hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC----------chHHHHH
Q 024997          143 EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE----------EDKDCYG  212 (259)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~  212 (259)
                        -.++++..+.+    ..+++.+.|.+.+              +.+.. .||--+++|....          ...+..+
T Consensus       322 --~~~~yl~~ri~----qv~yl~~~L~~~G--------------vpi~~-~Gghav~iDa~~~lphip~~~fpa~al~~~  380 (467)
T TIGR02617       322 --MNLDWLAYRIN----QVQYLVNGLEEIG--------------VVCQQ-AGGHAAFVDAGKLLPHIPADQFPAHALACE  380 (467)
T ss_pred             --ccHHHHHHHHH----HHHHHHHHHHhCC--------------CcEEe-cCccEEEEehhhhCCCCChhhCcHHHHHHH
Confidence              12333333333    3344455555433              33334 5555555553321          3567777


Q ss_pred             HHHHcCeeeec-CCcc-c----------CCCCeEEEEeec---ChhhHHHHHHHHHHHhhh
Q 024997          213 ILKAAKIIGRE-GKKF-R----------AEARFVRLSLLK---SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       213 ll~~~gi~~~~-g~~f-~----------~~~~~~Ris~~~---~~~~~~~~~~~l~~~l~~  258 (259)
                      +-.+.||-..- |+.. +          ++-..+|+++-+   +.+.++...+++..+.++
T Consensus       381 ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~  441 (467)
T TIGR02617       381 LYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_pred             HHHHcCcceEeecceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence            77788885322 2211 1          113579999955   889999999999887653

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=97.98  E-value=3e-05  Score=66.53  Aligned_cols=126  Identities=15%  Similarity=0.113  Sum_probs=80.3

Q ss_pred             CCCceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeEEEeccccccCC
Q 024997           33 SDTHLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEELMIFTISKLTGH   96 (259)
Q Consensus        33 ~~~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i~~~S~SK~~g~   96 (259)
                      .++..+ +|..| +.-.|...         .++|+++|+++|.||++  |+.....+.    +..+ +  +-+++|.++ 
T Consensus       175 ~~~iaa-vivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~P-D--iv~~gK~l~-  249 (339)
T PF00202_consen  175 ADEIAA-VIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDP-D--IVTFGKGLG-  249 (339)
T ss_dssp             GGGEEE-EEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSS-S--EEEEEGGGG-
T ss_pred             CCcEEE-EEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccC-c--ccccccchh-
Confidence            345566 55555 32233333         38999999999999999  532222221    2222 3  345579997 


Q ss_pred             CcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhc
Q 024997           97 AGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLS  171 (259)
Q Consensus        97 ~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  171 (259)
                      .|+.+|.+++. +++.+.+.......+++.+++...++.+.|+...+   ++    ..+++++.-.++.+.|+++
T Consensus       250 gG~p~sav~~~-~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~---~~----~~~~~~~~g~~l~~~L~~l  316 (339)
T PF00202_consen  250 GGLPISAVLGS-EEIMEAFQPGSHGSTFGGNPLSCAAALATLEILEE---ED----LLERVRELGERLREGLREL  316 (339)
T ss_dssp             TTSSEEEEEEE-HHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHH---TT----HHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccccc-chhhccccccccccccccchHhhhhhhhHHHhhcc---HH----HHHHHHHHHHHHHHHHHHH
Confidence            78999999999 79998876655667788899999988888886522   12    2445555555555555544

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=97.98  E-value=0.001  Score=55.35  Aligned_cols=214  Identities=15%  Similarity=0.084  Sum_probs=132.5

Q ss_pred             ccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCC---CCCCCeEEEeccccc
Q 024997           22 EGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIP---APADEELMIFTISKL   93 (259)
Q Consensus        22 ~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~---~~~~~~i~~~S~SK~   93 (259)
                      .+.++++++.+++++.++++++.+.=||..+     .++|+++|++++.|=++-   ...++   ...+.++-+++.-|.
T Consensus       153 ~~~P~~~~~~~~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHs---aGavp~~Lh~~gaDfaigcsyKY  229 (407)
T COG3844         153 VIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHS---AGAVPVDLHAAGADFAIGCSYKY  229 (407)
T ss_pred             eeChHHHHHhhccceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcc---cCCcceeecccCCCeeeeeecee
Confidence            4567789999999999999999999999998     389999999999998772   22222   345668889999999


Q ss_pred             c-CCCcceEEEEEecCHHHHHHHHH-----------------------hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcch
Q 024997           94 T-GHAGSRFGWAVIKDEAVYQRMSA-----------------------YISLNTMGVSRECQLRAFKLLKVVLEDGGNNI  149 (259)
Q Consensus        94 ~-g~~G~R~G~i~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  149 (259)
                      + |.||.--|..+.+  +..+....                       ..+.....++.+...+....|+-.    .+--
T Consensus       230 LNgGPGapa~l~v~~--~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDif----a~~~  303 (407)
T COG3844         230 LNGGPGAPAGLFVAP--RHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIF----ADVD  303 (407)
T ss_pred             ccCCCCCceeEEecc--ccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhh----hhcC
Confidence            8 4577655544433  43333211                       011111222333333333333321    1112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC-CccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCccc
Q 024997          150 FEFGYNTMKKRWENLSKIISLSNR-FSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFR  228 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~  228 (259)
                      +.+.+++--...+.+++.++.... +.+....+       .-..+.|..+.+..+  ....+.+.|.++||..-    |.
T Consensus       304 i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tP-------r~~~~rGsqvS~~hp--~~~~V~qaLi~rGVigD----~R  370 (407)
T COG3844         304 ITELRKKSLALTDYFIELVEARCEYYGLTLVTP-------RAHEERGSQVSLYHP--HGYQVMQALIDRGVIGD----FR  370 (407)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhccccCCcEEecc-------chhhhccceeeEecC--cHHHHHHHHHHcCcccc----cc
Confidence            666777777777888888776542 11111111       011234555555554  34555566667898542    22


Q ss_pred             CCCCeEEEEeec---ChhhHHHHHHHHHHHhhh
Q 024997          229 AEARFVRLSLLK---SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       229 ~~~~~~Ris~~~---~~~~~~~~~~~l~~~l~~  258 (259)
                       .++.+|+.++.   +-.++=.+++.|.++++.
T Consensus       371 -~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t  402 (407)
T COG3844         371 -EPDVLRFGFTPLYVSFVDVWDAVDALEEVLDT  402 (407)
T ss_pred             -CCCeeeecCccceechhHHHHHHHHHHHHHHh
Confidence             35899999976   667888888888888764

>PRK13578 ornithine decarboxylase; Provisional

Probab=97.94  E-value=0.00058  Score=63.51  Aligned_cols=69  Identities=16%  Similarity=0.130  Sum_probs=43.1

Q ss_pred             ceEEEEcCCCCCChhhH-----HHh-hcCCCcEEEeeccc-----cCCCCCCCC------CC-CCCeEEEeccccccCCC
Q 024997           36 HLVEFVTAPNNPDGQMN-----KAV-LKGPYAKSIYDHAY-----FWPHFAPIP------AP-ADEELMIFTISKLTGHA   97 (259)
Q Consensus        36 ~~~i~i~~p~NPtG~~~-----~~l-a~~~~~~vi~De~y-----~~~~~~~~~------~~-~~~~i~~~S~SK~~g~~   97 (259)
                      .+++++++|+. -|.++     .++ ++..+ .|++|||+     |.+.+..++      +. .+-++++.|..|.++  
T Consensus       283 ~k~vvit~pTY-dG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~--  358 (720)
T PRK13578        283 FRLAVIQLGTY-DGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQA--  358 (720)
T ss_pred             ceEEEEECCCC-cceeecHHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcch--
Confidence            48889998864 45555     254 67788 99999998     223211121      12 234689999999984  


Q ss_pred             cce-EEEEEecC
Q 024997           98 GSR-FGWAVIKD  108 (259)
Q Consensus        98 G~R-~G~i~~~~  108 (259)
                      ++- -+++...+
T Consensus       359 alTQaS~LHvk~  370 (720)
T PRK13578        359 GFSQTSQIHKKD  370 (720)
T ss_pred             hhhhHhhhhcCC
Confidence            333 34666653

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=97.93  E-value=0.00051  Score=61.15  Aligned_cols=163  Identities=13%  Similarity=0.040  Sum_probs=101.1

Q ss_pred             cchhhhhhccCcc-----c--ccccChhhhcccCCCCceE--EEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc--
Q 024997            6 LYQEQTDYFESVD-----Y--KFEGEANLWGNASSDTHLV--EFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY--   69 (259)
Q Consensus         6 ~~~~~~~~~g~~~-----~--~~~~d~~~l~~~~~~~~~~--i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y--   69 (259)
                      .+.+.++..|...     +  .+.+|+++|++++.+.+..  |+-+.++-|||.+=     +++|+++++++.+|.||  
T Consensus       169 s~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG  248 (460)
T COG0076         169 SFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGG  248 (460)
T ss_pred             HHHHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccc
Confidence            4556666666654     2  4789999999999775554  78889999999974     59999999999999999  


Q ss_pred             c----CCCCCCC-CCCCCCeEEEeccccccCCCcceEEEEEecCH-HHHHHHHHhhhhh--------cCCCCHHH-HHHH
Q 024997           70 F----WPHFAPI-PAPADEELMIFTISKLTGHAGSRFGWAVIKDE-AVYQRMSAYISLN--------TMGVSREC-QLRA  134 (259)
Q Consensus        70 ~----~~~~~~~-~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~-~~~~~~~~~~~~~--------~~~~~~~~-q~~~  134 (259)
                      |    -.....+ .+....+=+.-++.|.+. +=.-+||+...|+ ++.+.+.-...++        +...+.+. +.++
T Consensus       249 ~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~-aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~  327 (460)
T COG0076         249 FLLPFLEPDGRWDFGLEGVDSITVDGHKYGL-APIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALA  327 (460)
T ss_pred             eeecccCccchhhcCCCCceEEEECcccccC-CCCCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHH
Confidence            2    1111111 123334556889999974 3344899999986 4555443211111        11112222 2211


Q ss_pred             -HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCC
Q 024997          135 -FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNR  173 (259)
Q Consensus       135 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  173 (259)
                       -..+...    +.+-+.+..++..+..+.+.+.+++.+.
T Consensus       328 ~~~~l~~l----G~eGy~~l~~~~~~~a~~la~~l~~~~~  363 (460)
T COG0076         328 LYANLRRL----GREGYRKLLDRTLELARYLAEELEKLGD  363 (460)
T ss_pred             HHHHHHHh----CHhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence             1112221    2334566667777888888888887764

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=97.89  E-value=0.00023  Score=60.92  Aligned_cols=136  Identities=13%  Similarity=0.036  Sum_probs=94.0

Q ss_pred             CcccchhhhhhccCccccc----ccChhhhcccCCCCceEEEEcCCCCC--Chhh----HHHhhcCCCcEEEeeccccC-
Q 024997            3 FYPLYQEQTDYFESVDYKF----EGEANLWGNASSDTHLVEFVTAPNNP--DGQM----NKAVLKGPYAKSIYDHAYFW-   71 (259)
Q Consensus         3 ~y~~~~~~~~~~g~~~~~~----~~d~~~l~~~~~~~~~~i~i~~p~NP--tG~~----~~~la~~~~~~vi~De~y~~-   71 (259)
                      +-++...+.+..|+..+.+    .-...+++.++++++++++-+.-+|=  +|.+    +.++|+++|+++++|.+-=. 
T Consensus       120 g~~~v~d~~~~aG~~l~EvG~tn~t~~~d~~~AIne~ta~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~  199 (395)
T COG1921         120 GAFRVPDIIRLAGAKLVEVGTTNRTHLKDYELAINENTALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGAL  199 (395)
T ss_pred             CCCChhHHHHHcCCEEEEecccCcCCHHHHHHHhccCCeeEEEEeeccccccccccHHHHHHHHHHcCCCEEEecCCccc
Confidence            4455667777777765322    34466788889888776555554442  2222    24899999999999984400 


Q ss_pred             -CCCCCCC--CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Q 024997           72 -PHFAPIP--APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVV  141 (259)
Q Consensus        72 -~~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~  141 (259)
                       .....+.  -..+.++++.|.-|.+|  |-+-|.+++. +++++++++.......-+..+..++..+.|+.+
T Consensus       200 v~~e~~l~~~la~GaDLV~~SgdKllg--GPqaGii~Gk-KelI~~lq~~~l~Ralrv~K~tla~l~~aLe~y  269 (395)
T COG1921         200 VDKEPDLREALALGADLVSFSGDKLLG--GPQAGIIVGK-KELIEKLQSHPLKRALRVDKETLAALEAALELY  269 (395)
T ss_pred             cccccchhHHHhcCCCEEEEecchhcC--CCccceEech-HHHHHHHHhhhhhhhhhcCcHhHHHHHHHHHHH
Confidence             0011111  13456899999999997  6668999999 899999988766666667788888888888865

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=97.88  E-value=0.002  Score=54.46  Aligned_cols=213  Identities=12%  Similarity=0.042  Sum_probs=126.4

Q ss_pred             cChhhhcccCCC-CceEEEEcCCCCCChhhHH---HhhcCCCcEEEeeccccCC--CCCCCCC-CCCCeEEEeccccccC
Q 024997           23 GEANLWGNASSD-THLVEFVTAPNNPDGQMNK---AVLKGPYAKSIYDHAYFWP--HFAPIPA-PADEELMIFTISKLTG   95 (259)
Q Consensus        23 ~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~~---~la~~~~~~vi~De~y~~~--~~~~~~~-~~~~~i~~~S~SK~~g   95 (259)
                      +|-|.|++.... ++++|+.-.-..|--.-++   ++|.+.|++++.|.++..+  ....+++ -.-.+|+..|..|++ 
T Consensus       176 IDYD~Le~~A~~frPk~iiaG~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTHKsL-  254 (477)
T KOG2467|consen  176 IDYDKLEKTATLFRPKLIIAGTSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTHKSL-  254 (477)
T ss_pred             eehHHHHHHHHhcCCcEEEeccccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeeccccccc-
Confidence            455778776643 7888555443445444443   8899999999999988311  0011111 122478899999997 


Q ss_pred             CCcceEEEEEecCH---------------HHHHHHHHhhhhhc-CCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 024997           96 HAGSRFGWAVIKDE---------------AVYQRMSAYISLNT-MGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKK  159 (259)
Q Consensus        96 ~~G~R~G~i~~~~~---------------~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  159 (259)
                       .|=|-|.|... +               ++-++++..--+.- .++..=.-.+.+-+|...    ....+.+..+++.+
T Consensus       255 -RGPRg~mIFyR-kGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa----~tpefk~Yq~qV~~  328 (477)
T KOG2467|consen  255 -RGPRGAMIFYR-KGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQA----MTPEFKEYQKQVLK  328 (477)
T ss_pred             -cCCcceeEEEe-ccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhh----CCHHHHHHHHHHHH
Confidence             46666777654 2               22333322111111 223222223334455542    33456677888999


Q ss_pred             HHHHHHHHHHhcCCCccccccccccccceeeCCCCCe-eEEEecCCC--chHHHHHHHHHcCeeee----cCCcccCCCC
Q 024997          160 RWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPA-YAWVKCERE--EDKDCYGILKAAKIIGR----EGKKFRAEAR  232 (259)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~ll~~~gi~~~----~g~~f~~~~~  232 (259)
                      |.+.+.+.|.+++              .+......-. .+++++...  +...+++.|+..+|.+.    ||+.-...++
T Consensus       329 Nakala~~l~~~G--------------y~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~Pg  394 (477)
T KOG2467|consen  329 NAKALASALISRG--------------YKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPG  394 (477)
T ss_pred             HHHHHHHHHHHcC--------------ceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCC
Confidence            9999999998877              2222222222 445566544  78889999999899764    4433333478


Q ss_pred             eEEEEe----ec--ChhhHHHHHHHHHHHh
Q 024997          233 FVRLSL----LK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       233 ~~Ris~----~~--~~~~~~~~~~~l~~~l  256 (259)
                      .+||..    ++  .++++++..+-|.+.+
T Consensus       395 GiRiGtPAmTsRG~~e~df~~v~~fi~~av  424 (477)
T KOG2467|consen  395 GIRIGTPAMTSRGFGEEDFEKVADFIDRAV  424 (477)
T ss_pred             ceeccchhhcccCccHHHHHHHHHHHHHHH
Confidence            899985    22  5677777777666554

>PLN02263 serine decarboxylase

Probab=97.78  E-value=0.0051  Score=54.69  Aligned_cols=217  Identities=11%  Similarity=0.036  Sum_probs=125.1

Q ss_pred             chhhhhhccCcc------cccccChhhhcccCCC---CceEEEEcCCCCCChhhH-----HHhhcCCCc-----EEEeec
Q 024997            7 YQEQTDYFESVD------YKFEGEANLWGNASSD---THLVEFVTAPNNPDGQMN-----KAVLKGPYA-----KSIYDH   67 (259)
Q Consensus         7 ~~~~~~~~g~~~------~~~~~d~~~l~~~~~~---~~~~i~i~~p~NPtG~~~-----~~la~~~~~-----~vi~De   67 (259)
                      ..++++++|...      ..+++|.++|++.+.+   .+.+|+.+..+-++|.+=     .++|+++|+     |+-+|.
T Consensus       191 v~KAa~llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDA  270 (470)
T PLN02263        191 VFKAARMYRMECVKVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDG  270 (470)
T ss_pred             HHHHHHhcCCcceEeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEec
Confidence            445666666654      2468999999998843   356666777888999985     378888886     999999


Q ss_pred             ccc---C---CCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhh-----cCCCCHHHHHHH--
Q 024997           68 AYF---W---PHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN-----TMGVSRECQLRA--  134 (259)
Q Consensus        68 ~y~---~---~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~q~~~--  134 (259)
                      +|.   -   .....+.....-.=+.-+..|.++ .-...|.+... .+..+.+.....++     +...+...+.++  
T Consensus       271 A~GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~-~P~~cgvll~R-~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~l  348 (470)
T PLN02263        271 ALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVG-CPMPCGVQITR-MEHINVLSSNVEYLASRDATIMGSRNGHAPIFL  348 (470)
T ss_pred             cchhhHhhhcccccccCCCcCccEEEECCccccC-CCcCEEEEEEe-hhhHhhhccChHhhCCCCCCcCCCCCcHHHHHH
Confidence            992   1   111112111122335667789986 55678988888 45555443211111     122222222111  


Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHH
Q 024997          135 FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGIL  214 (259)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  214 (259)
                      -..++.    .+.+-+.+..++..++.+.+.+.|++.+.             .....|.... +.+..+  +.+.    .
T Consensus       349 W~~L~~----~G~~G~~~~i~~~~~~A~~l~~~l~~~g~-------------~~~~~p~s~~-V~f~~p--~~~~----~  404 (470)
T PLN02263        349 WYTLNR----KGYRGFQKEVQKCLRNAHYLKDRLREAGI-------------SAMLNELSST-VVFERP--KDEE----F  404 (470)
T ss_pred             HHHHHH----hCHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------eEEeCCCceE-EEEecC--chHH----h
Confidence            112222    13344666677777888888888887642             1122344333 333322  1211    1


Q ss_pred             HHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHh
Q 024997          215 KAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       215 ~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l  256 (259)
                       ..|..+..      .++.+++.+..  +.+.+++.++-|++..
T Consensus       405 -~~gW~L~~------~~~~~Hivvmphv~~~~id~fi~DL~~~~  441 (470)
T PLN02263        405 -VRRWQLAC------QGNIAHVVVMPSVTIEKLDYFLKELVEKR  441 (470)
T ss_pred             -hcceEEcc------CCCcEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence             24665543      12568999876  6788888888887654

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=97.76  E-value=0.00011  Score=62.46  Aligned_cols=144  Identities=15%  Similarity=0.164  Sum_probs=54.6

Q ss_pred             hhhhcccCCCCceEEEEcCCCCC-----ChhhH----HHhhcCCCcEEEeeccc--------cC-CCCCCCC--CCCCCe
Q 024997           25 ANLWGNASSDTHLVEFVTAPNNP-----DGQMN----KAVLKGPYAKSIYDHAY--------FW-PHFAPIP--APADEE   84 (259)
Q Consensus        25 ~~~l~~~~~~~~~~i~i~~p~NP-----tG~~~----~~la~~~~~~vi~De~y--------~~-~~~~~~~--~~~~~~   84 (259)
                      .++.+++++++|.+++-.+++|-     |+.+-    .++|+++|+++|+|-.-        |+ +....+.  -..+-+
T Consensus       126 ~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaD  205 (367)
T PF03841_consen  126 LSDYEKAITENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGAD  205 (367)
T ss_dssp             -----------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-S
T ss_pred             cccccccccccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCC
Confidence            45688899999999999999885     33332    48999999999999543        21 1112222  234568


Q ss_pred             EEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcC-------CcchHHHHHHHH
Q 024997           85 LMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDG-------GNNIFEFGYNTM  157 (259)
Q Consensus        85 i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~-------~~~~~~~~~~~~  157 (259)
                      ++++|..|.+|.|.  .|.+++. ++++++++.....-...+......+..+.++...+.+       ....+.+..+.+
T Consensus       206 lV~fSGdKlLGGPQ--aGiI~Gk-k~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L  282 (367)
T PF03841_consen  206 LVTFSGDKLLGGPQ--AGIIVGK-KELIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEEL  282 (367)
T ss_dssp             EEEEETTSSSSS-S---EEEEEE-HHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH------------------------
T ss_pred             EEEEECCCcCCCCC--eEEEEeC-HHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhccccccccccccccccccc
Confidence            99999999998555  7999999 8999999876655556678888787777777543211       112245556667


Q ss_pred             HHHHHHHHHHHHhc
Q 024997          158 KKRWENLSKIISLS  171 (259)
Q Consensus       158 ~~~~~~~~~~l~~~  171 (259)
                      +++.+.+...|+..
T Consensus       283 ~~rA~~l~~~l~~~  296 (367)
T PF03841_consen  283 RARAERLAAQLKAA  296 (367)
T ss_dssp             --------------
T ss_pred             cccccccccccccc
Confidence            77777777776653

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=97.72  E-value=0.0002  Score=62.53  Aligned_cols=137  Identities=12%  Similarity=0.048  Sum_probs=71.3

Q ss_pred             hhhcccC--CCCce---EEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc-----cCC---CCCCCC-C--CCCCe
Q 024997           26 NLWGNAS--SDTHL---VEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY-----FWP---HFAPIP-A--PADEE   84 (259)
Q Consensus        26 ~~l~~~~--~~~~~---~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y-----~~~---~~~~~~-~--~~~~~   84 (259)
                      +.+++.+  .+..+   ++++++|+. -|.++     .++|+++|+.|++|||+     |.+   +...+. +  ....+
T Consensus       154 ~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~~~gad~~~~~~~  232 (417)
T PF01276_consen  154 EDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSALALGADRPNDPGI  232 (417)
T ss_dssp             HHHHHHHHHCTTCHCESEEEEESS-T-TSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCSSTTSS-CTSBEE
T ss_pred             HHHHHHHHhCccccCceEEEEeCCCC-CeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchhhccCccccccce
Confidence            6777777  34434   489999975 35554     48999999999999998     211   011111 1  22347


Q ss_pred             EEEeccccccCCCcce-EEEEEecCHH--HHHHHHHhhhh-hcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 024997           85 LMIFTISKLTGHAGSR-FGWAVIKDEA--VYQRMSAYISL-NTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKR  160 (259)
Q Consensus        85 i~~~S~SK~~g~~G~R-~G~i~~~~~~--~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  160 (259)
                      +++.|..|+++  ++. -+++...+..  -.+++++.... .+.++|-+..+. +..-...+   ....-.+..++..++
T Consensus       233 ~vvqS~HKtL~--altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmAS-lD~a~~~m---~~~~G~~l~~~~i~~  306 (417)
T PF01276_consen  233 IVVQSTHKTLP--ALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMAS-LDVARAQM---EEEEGRELLEEAIEL  306 (417)
T ss_dssp             EEEEEHHHHSS--S-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHH-HHHHHHHH---SHHHHHHHHHHHHHH
T ss_pred             eeeechhhccc--ccccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHH-HHHHHHHH---hhhhhHHHHHHHHHH
Confidence            99999999985  222 4577766422  13455554432 245555544432 22222111   011223344455555


Q ss_pred             HHHHHHHHH
Q 024997          161 WENLSKIIS  169 (259)
Q Consensus       161 ~~~~~~~l~  169 (259)
                      .+.+++.++
T Consensus       307 a~~~R~~i~  315 (417)
T PF01276_consen  307 AEEFRKKIN  315 (417)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            556666663

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=97.65  E-value=0.0018  Score=54.46  Aligned_cols=191  Identities=15%  Similarity=0.202  Sum_probs=106.2

Q ss_pred             CceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--------cCC-CCCCCCCCCCCeEEEeccccccC
Q 024997           35 THLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--------FWP-HFAPIPAPADEELMIFTISKLTG   95 (259)
Q Consensus        35 ~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--------~~~-~~~~~~~~~~~~i~~~S~SK~~g   95 (259)
                      .+.+-+|..| +.--|.-.         .++++++|+.+|+||++        ||. ....+....|    +-||||-|-
T Consensus       270 ~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD----~vTFSKK~q  345 (484)
T KOG1405|consen  270 KPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPD----VVTFSKKFQ  345 (484)
T ss_pred             CCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCcc----ceehhhhhh
Confidence            3555466666 44444333         38999999999999998        222 2334433333    678999994


Q ss_pred             CCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 024997           96 HAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFS  175 (259)
Q Consensus        96 ~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  175 (259)
                       +|   ||..-.  +++.. ..++...+|...+.-...+.++++.+.   .++.    .+..+.--+.+...|.++.   
T Consensus       346 -~g---Gffh~~--~frpn-~pYrifNTWmGdP~k~lll~~vv~~I~---~~~L----l~n~~~vG~~l~~gL~~Lq---  408 (484)
T KOG1405|consen  346 -TG---GFFHDE--EFRPN-EPYRIFNTWMGDPSKNLLLEEVVQEIK---REDL----LNNVAHVGKALLKGLLELQ---  408 (484)
T ss_pred             -cC---ccccCc--ccCCC-chHHHhhhhcCChHHHHHHHHHHHHHh---HHHH----HHHHHHHHHHHHHHHHHHH---
Confidence             66   766633  55442 233444456655544444445555431   2233    3333333344444444332   


Q ss_pred             cccccccccccceeeCCCCCeeEEEecCCCc-hHHHHHHHHHcCeeeecCCcccCCCCeEEEEe--ecChhhHHHHHHHH
Q 024997          176 LQEIAPQYCTYFKKIRPPSPAYAWVKCEREE-DKDCYGILKAAKIIGREGKKFRAEARFVRLSL--LKSQDDFDLLLHRL  252 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~--~~~~~~~~~~~~~l  252 (259)
                       ...+.    .+...+. .|.|+..+++..+ .+.+...++.+|+.+--   ++  ...+|+-.  ...+...+-.++++
T Consensus       409 -~~~p~----~~~~~RG-rGTF~a~d~ps~~~Rdk~i~~~~~nGv~~GG---Cg--~~siRfRPsLvf~~~Ha~i~l~~~  477 (484)
T KOG1405|consen  409 -AKYPG----KINNLRG-RGTFIAWDCPSGSIRDKLILIARLNGVNLGG---CG--DKSIRFRPSLVFRKHHADIFLDIF  477 (484)
T ss_pred             -HhCch----hhhcccc-cceEEEEeCCChHHHHHHHHHHHHcCceecc---cc--cceeeeccceeehhhhHHHHHHHH
Confidence             11111    0222333 5778888888653 46666777778886532   33  24455554  34777777888888


Q ss_pred             HHHhh
Q 024997          253 DELIS  257 (259)
Q Consensus       253 ~~~l~  257 (259)
                      .+++.
T Consensus       478 ~k~l~  482 (484)
T KOG1405|consen  478 DKILA  482 (484)
T ss_pred             HHHhc
Confidence            88765

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=97.52  E-value=0.01  Score=57.61  Aligned_cols=183  Identities=14%  Similarity=0.104  Sum_probs=101.7

Q ss_pred             CCChhhHH-----HhhcCCCcEEEeeccccCCCCCCC--CCCCCCeEEEeccccccC---CCcceEEEEEecCHHHHHHH
Q 024997           46 NPDGQMNK-----AVLKGPYAKSIYDHAYFWPHFAPI--PAPADEELMIFTISKLTG---HAGSRFGWAVIKDEAVYQRM  115 (259)
Q Consensus        46 NPtG~~~~-----~la~~~~~~vi~De~y~~~~~~~~--~~~~~~~i~~~S~SK~~g---~~G~R~G~i~~~~~~~~~~~  115 (259)
                      |-+|.+.+     ++|+++|+++++ .+.- .....+  ++..+.+|+++|.-|..+   .-|=+.|++++. +++...+
T Consensus       244 ~~~G~v~dv~~I~~~ah~~GaL~iV-aad~-lal~~l~~pge~GADi~vgsgqKwg~P~G~GGP~aGflavr-~~~~r~~  320 (993)
T PLN02414        244 ATDGEVLDYAEFVKNAHANGVKVVM-ATDL-LALTMLKPPGEWGADIVVGSAQRFGVPMGYGGPHAAFLATS-QEYKRLM  320 (993)
T ss_pred             CCCeEEcCHHHHHHHHHHcCCEEEE-EECH-HHhcCCCCHhhccCcEEEECCCccccCCCCCCCCeeEEEEC-HHHHhhC
Confidence            45898873     889999999999 4431 011112  234466888999888871   123348999998 5765544


Q ss_pred             HH-hhh---------h-------------hcCCCCHH----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 024997          116 SA-YIS---------L-------------NTMGVSRE----CQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKII  168 (259)
Q Consensus       116 ~~-~~~---------~-------------~~~~~~~~----~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (259)
                      -. ...         .             ...+.+.+    ...++..++-...  ....=+.+..++..++..++.+.|
T Consensus       321 PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~--~g~~Gl~~Ia~ri~~la~~l~~~L  398 (993)
T PLN02414        321 PGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY--HGPEGLKTIAQRVHGLAGVFAAGL  398 (993)
T ss_pred             CCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHH
Confidence            21 000         0             01222333    1222222111000  112224555677777888888888


Q ss_pred             HhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHH
Q 024997          169 SLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFD  246 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~  246 (259)
                      +..+ +.+.            .++..+ -+.++++  +.+.+.+.|.++||.++..   +  .+.+|+|+..  ++++|+
T Consensus       399 ~~~G-~~~~------------~~~~f~-~vt~~~~--~~~~v~~~L~~~gI~l~~~---~--~~~lrvs~~e~~T~edId  457 (993)
T PLN02414        399 KKLG-FQVQ------------SLPFFD-TVKVKCS--DADAIADAAAKVGINLRVV---D--ANTVTVSFDETTTLEDVD  457 (993)
T ss_pred             hhcC-CccC------------CCCCcC-eEEEecC--CHHHHHHHHHHCCCeeEEe---c--CCeEEEEeeccCCHHHHH
Confidence            7643 2211            011112 2233343  3355666667889977642   1  3679999854  889999


Q ss_pred             HHHHHHHH
Q 024997          247 LLLHRLDE  254 (259)
Q Consensus       247 ~~~~~l~~  254 (259)
                      .+++.|..
T Consensus       458 ~L~~~l~~  465 (993)
T PLN02414        458 KLFKVFAG  465 (993)
T ss_pred             HHHHHHcc
Confidence            99998863

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=97.52  E-value=0.0072  Score=51.98  Aligned_cols=219  Identities=10%  Similarity=0.019  Sum_probs=111.4

Q ss_pred             ccChhhhcccC---CCCceEEEEcCCCCCChhhH------HHhhcCCCcEEEeeccc-cCCC--CCCCC---CCCCCeEE
Q 024997           22 EGEANLWGNAS---SDTHLVEFVTAPNNPDGQMN------KAVLKGPYAKSIYDHAY-FWPH--FAPIP---APADEELM   86 (259)
Q Consensus        22 ~~d~~~l~~~~---~~~~~~i~i~~p~NPtG~~~------~~la~~~~~~vi~De~y-~~~~--~~~~~---~~~~~~i~   86 (259)
                      ..|.+.+++.+   .+...+.++++++--.|...      +++|+++|+..|+..|| ....  ...+.   ....-.++
T Consensus       138 ~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~  217 (389)
T PF05889_consen  138 ITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAF  217 (389)
T ss_dssp             EEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEE
T ss_pred             eccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCccee
Confidence            34455566655   34556667776653223322      59999999999999999 1000  00000   11233678


Q ss_pred             EeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 024997           87 IFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSK  166 (259)
Q Consensus        87 ~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (259)
                      +.|+-|-| +-++--+.+.++++..++.+...........+...-..-+..|...  + ....+.++++.+....+++.+
T Consensus       218 vqS~dkNF-~VPvGgai~As~~~~~i~~vs~~YpGRas~sp~ld~~itLl~LG~~--g-~~~ll~~r~~~f~~l~erl~~  293 (389)
T PF05889_consen  218 VQSTDKNF-MVPVGGAIMASFDPSGILAVSKEYPGRASASPSLDLFITLLSLGCT--G-YGALLKERKASFPYLKERLKK  293 (389)
T ss_dssp             EEEHHHHH-CEESSHEEEEESSHHHHHHHHHTSHSHBTSHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeecCCCE-EecCCCcEEEecCHHHHHHHHHHhhhhhhcccchHHHHHHHHHhhh--H-HHHHHHHHHHHHHHHHHHHHH
Confidence            89999988 3333346677777788888876443322222222222222222210  0 122233333333333333333


Q ss_pred             HHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC------chHHHHHHHHHcCee----eecCCcccC------C
Q 024997          167 IISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE------EDKDCYGILKAAKII----GREGKKFRA------E  230 (259)
Q Consensus       167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~gi~----~~~g~~f~~------~  230 (259)
                      .-++.+.    .+.         ..|.....+.+.++..      +.-++..+|...||.    +.++..+..      +
T Consensus       294 ~aee~~e----~ll---------~~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp  360 (389)
T PF05889_consen  294 WAEEVGE----RLL---------ETPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYP  360 (389)
T ss_dssp             HHHHTTE----EBS---------SSTT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--S
T ss_pred             HHHHhhh----hhc---------CCCCCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCc
Confidence            3333331    111         1344455555555533      235677777788885    333322211      2


Q ss_pred             CCeEEEE--eecChhhHHHHHHHHHHHhh
Q 024997          231 ARFVRLS--LLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       231 ~~~~Ris--~~~~~~~~~~~~~~l~~~l~  257 (259)
                      -.++-++  ++-+.++++..+++|+++++
T Consensus       361 ~~Ylt~AsaiG~~~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  361 CPYLTAASAIGMTREEVDYFVKRLDKIIK  389 (389)
T ss_dssp             SSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence            4677774  34499999999999999875

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=97.46  E-value=0.016  Score=54.11  Aligned_cols=80  Identities=15%  Similarity=0.169  Sum_probs=47.0

Q ss_pred             hhhhcccCC--C---CceEEEEcCCCCCChhhH--HHhhcCCCcEE-Eeeccc-----cCCCCC---CCCC---CCCCeE
Q 024997           25 ANLWGNASS--D---THLVEFVTAPNNPDGQMN--KAVLKGPYAKS-IYDHAY-----FWPHFA---PIPA---PADEEL   85 (259)
Q Consensus        25 ~~~l~~~~~--~---~~~~i~i~~p~NPtG~~~--~~la~~~~~~v-i~De~y-----~~~~~~---~~~~---~~~~~i   85 (259)
                      .+.+++.+.  +   +++.+++++| +=-|.++  .++++..|+.+ ++|||+     |.+.+.   .+..   ....++
T Consensus       282 ~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~~g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~  360 (713)
T PRK15399        282 RDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQTLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIF  360 (713)
T ss_pred             HHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHHhCCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeee
Confidence            366777762  2   2367899998 5567777  34444446766 699998     222121   1211   122355


Q ss_pred             EEeccccccCCCcce-EEEEEec
Q 024997           86 MIFTISKLTGHAGSR-FGWAVIK  107 (259)
Q Consensus        86 ~~~S~SK~~g~~G~R-~G~i~~~  107 (259)
                      .+.|.+|.++  ++. -+++...
T Consensus       361 ~tQStHKtL~--alTQaS~iHvk  381 (713)
T PRK15399        361 ETQSTHKMLA--AFSQASLIHIK  381 (713)
T ss_pred             eeeehhcccc--ccchheeeeec
Confidence            6999999984  333 3466664

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=97.44  E-value=0.02  Score=55.08  Aligned_cols=200  Identities=12%  Similarity=0.055  Sum_probs=103.6

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEeccccccC--
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTG--   95 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g--   95 (259)
                      +|.++|++.+  ++..+++.+|+ -+|.+.     .+++++.|++++++--...-....-++..+-+|++++- |.||  
T Consensus       184 ~~~~~l~~~~--~~~~v~~q~Pn-~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~-q~fg~p  259 (939)
T TIGR00461       184 VDCSDIKKAV--DVFGCLLQYPA-TDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTPPGHYGADIVLGSS-QRFGVP  259 (939)
T ss_pred             EcHHHHhhcC--CEEEEEEECCC-CCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCCHHHcCCcEEeeCC-CccCCC
Confidence            3555566555  56676777775 567775     38889999999985411100000111233345554432 3222  


Q ss_pred             ----CCcceEEEEEecCHHHHHHHH----------------------------HhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 024997           96 ----HAGSRFGWAVIKDEAVYQRMS----------------------------AYISLNTMGVSRECQLRAFKLLKVVLE  143 (259)
Q Consensus        96 ----~~G~R~G~i~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~q~~~~~~l~~~~~  143 (259)
                          .|+  .|++.+. +++..++-                            +-+.....|.+...-+..+.++-..  
T Consensus       260 ~g~GGP~--aG~~a~~-~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~--  334 (939)
T TIGR00461       260 MGYGGPH--AAFFAVK-DEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVY--  334 (939)
T ss_pred             CCCCCCc--eeeeeec-HhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHH--
Confidence                244  6777776 45555431                            0111111222221111111222111  


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCee--EEEecCCCchHHHHHHHHHcCeee
Q 024997          144 DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAY--AWVKCEREEDKDCYGILKAAKIIG  221 (259)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~gi~~  221 (259)
                       .+..-+.+.-++...+...+.+.|++.+ +             +...+  .+|  +.++++..+.+.+.+.+.++||.+
T Consensus       335 -~G~~GL~~iA~~~~~~a~~l~~~L~~~G-~-------------~~~~~--~fF~~~~v~~~~~~~~~i~~~~~~~gi~l  397 (939)
T TIGR00461       335 -HGPKGLKNIARRIHSLTSILANGLENDP-H-------------ELINK--TWFDTLTVKVGNGISSELLKAAEEFNINL  397 (939)
T ss_pred             -HCHHHHHHHHHHHHHHHHHHHHHHHhCC-C-------------cccCC--CccceEEEEeCCCCHHHHHHHHHHCCCee
Confidence             1333355555666667777777787643 2             21122  222  234443223455556666789997


Q ss_pred             ecCCcccCCCCeEEEEeec--ChhhHHHHHHHHH
Q 024997          222 REGKKFRAEARFVRLSLLK--SQDDFDLLLHRLD  253 (259)
Q Consensus       222 ~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~  253 (259)
                      +.     ...+.+++|+.-  +.++++.+++.+.
T Consensus       398 ~~-----~~~~~i~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       398 RA-----VDTTTVGIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             ee-----cCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence            65     223689999954  8899999998884

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=97.31  E-value=0.026  Score=49.33  Aligned_cols=195  Identities=13%  Similarity=0.160  Sum_probs=108.1

Q ss_pred             cccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcC-CCcEEEeeccc--c-CC-CCCCCC--CCC-CCeE
Q 024997           19 YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKG-PYAKSIYDHAY--F-WP-HFAPIP--APA-DEEL   85 (259)
Q Consensus        19 ~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~-~~~~vi~De~y--~-~~-~~~~~~--~~~-~~~i   85 (259)
                      ..|.+|+..+.+.+++++..++.+-|+-|+|.+=     .+++.+ +++.+-+|.+-  | -| ......  +-. +.+-
T Consensus       202 ~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~  281 (491)
T KOG1383|consen  202 GDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVT  281 (491)
T ss_pred             cceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCCce
Confidence            3578899999999999999999999999999986     266666 99999999875  3 22 111110  111 1122


Q ss_pred             EE-eccccc-cCCCcceEEEEEecCHHHHHH-H-------HHhhhhhcC-----CCCHHHHHHHHHHHHHHHhcCCcchH
Q 024997           86 MI-FTISKL-TGHAGSRFGWAVIKDEAVYQR-M-------SAYISLNTM-----GVSRECQLRAFKLLKVVLEDGGNNIF  150 (259)
Q Consensus        86 ~~-~S~SK~-~g~~G~R~G~i~~~~~~~~~~-~-------~~~~~~~~~-----~~~~~~q~~~~~~l~~~~~~~~~~~~  150 (259)
                      .+ -+..|. |..+|  +||++-.++++... +       -......+.     +.....|++.  ++.-     +.+-+
T Consensus       282 Sisa~~HKYGl~~~G--~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~--~~~l-----G~eGY  352 (491)
T KOG1383|consen  282 SISADGHKYGLAPAG--SSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAA--LMSL-----GEEGY  352 (491)
T ss_pred             eEeeccceeeeeecC--cEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHH--HHHh-----hHHHH
Confidence            22 233344 34466  78888665544332 1       111111122     2223334433  2221     22234


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCC
Q 024997          151 EFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAE  230 (259)
Q Consensus       151 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~  230 (259)
                      .+..+...+..+.+.+.++.+.++.+             ..++.-.++..+-...+.-.+..+|++.|..+ |...|.. 
T Consensus       353 ~~~~~~ive~~~~l~egie~i~~i~i-------------~gkp~vs~~~~~s~~~~i~elsd~l~~~GW~l-nalq~P~-  417 (491)
T KOG1383|consen  353 RENTQNIVETARKLREGIENIKGIKI-------------VGKPLVSFILFGSNDVNIFELSDLLRKKGWIL-NALQFPA-  417 (491)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccccee-------------cCCCcEEEEEccCCccchhhhhHHHHhcCcCc-cccCCCC-
Confidence            44556677788888888887665332             22222222233333334556777788888866 4444443 


Q ss_pred             CCeEEEEee
Q 024997          231 ARFVRLSLL  239 (259)
Q Consensus       231 ~~~~Ris~~  239 (259)
                        .+-|++.
T Consensus       418 --a~Hi~vt  424 (491)
T KOG1383|consen  418 --AIHICVT  424 (491)
T ss_pred             --ceEEEEE
Confidence              3444443

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=97.30  E-value=0.018  Score=51.90  Aligned_cols=85  Identities=20%  Similarity=0.189  Sum_probs=56.6

Q ss_pred             ccChhhhcccC--CCCc-eEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc--cCCCCCCCC---CCCCCeEEEe
Q 024997           22 EGEANLWGNAS--SDTH-LVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY--FWPHFAPIP---APADEELMIF   88 (259)
Q Consensus        22 ~~d~~~l~~~~--~~~~-~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y--~~~~~~~~~---~~~~~~i~~~   88 (259)
                      +++.+.+++.+  .+.. ++++++||+. -|.++     .++++.+++|+.+|++.  +.......+   .....++.+.
T Consensus       150 gI~~~~~~~~l~~~~~~~k~~vitnpTY-dGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~~tq  228 (557)
T COG1982         150 GIPLETFKEALLAHPDAEKLAVITNPTY-DGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGADFVTQ  228 (557)
T ss_pred             CCCHHHHHHHHHhChhhheeEEEecCcc-ceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCceEEEe
Confidence            67788888876  3455 8889988864 34444     28888999999999987  211111111   2356799999


Q ss_pred             ccccccCCCcceEEEEEecC
Q 024997           89 TISKLTGHAGSRFGWAVIKD  108 (259)
Q Consensus        89 S~SK~~g~~G~R~G~i~~~~  108 (259)
                      |..|.++ +.....++...+
T Consensus       229 S~HK~l~-alSQaS~iHv~~  247 (557)
T COG1982         229 STHKLLA-ALSQASMIHVKD  247 (557)
T ss_pred             chhhhhh-hhhhhHHHhhCC
Confidence            9999986 433344565553

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=97.24  E-value=0.02  Score=53.52  Aligned_cols=69  Identities=16%  Similarity=0.177  Sum_probs=44.3

Q ss_pred             ChhhhcccC--CCCce---EEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc-----cCCCC---CCCC-CC--CC
Q 024997           24 EANLWGNAS--SDTHL---VEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY-----FWPHF---APIP-AP--AD   82 (259)
Q Consensus        24 d~~~l~~~~--~~~~~---~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y-----~~~~~---~~~~-~~--~~   82 (259)
                      +.+.+++.+  .++.+   .+++++| +=-|.++     .++|+.++  |++|||+     |.+.+   ..+. +.  .+
T Consensus       281 ~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~~ga~~~~  357 (714)
T PRK15400        281 QHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGK  357 (714)
T ss_pred             CHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhhcCCCCCC
Confidence            367777777  23333   6799988 4467766     37777777  6899998     22222   1121 12  24


Q ss_pred             CeEEEeccccccC
Q 024997           83 EELMIFTISKLTG   95 (259)
Q Consensus        83 ~~i~~~S~SK~~g   95 (259)
                      .++++.|..|.++
T Consensus       358 ~i~vtQStHKtL~  370 (714)
T PRK15400        358 VIYETQSTHKLLA  370 (714)
T ss_pred             ceEEEEchhhccc
Confidence            4689999999984

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=97.18  E-value=0.036  Score=47.06  Aligned_cols=175  Identities=15%  Similarity=0.076  Sum_probs=110.3

Q ss_pred             cEEEeeccccCCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHh-------------hhhhcCCC
Q 024997           61 AKSIYDHAYFWPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAY-------------ISLNTMGV  126 (259)
Q Consensus        61 ~~vi~De~y~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~-------------~~~~~~~~  126 (259)
                      .++|+|-.-   ...+.+ +-.+-.++..+.=|-+|..|  ++.++.. ++++++...+             ...+..-+
T Consensus       171 ~~~v~D~SS---~ilsr~iDvsk~dviyagaQKnlGpaG--ltvvIvr-~~~l~r~~~~~~P~if~y~~~~~~~s~yNTP  244 (365)
T COG1932         171 GLLVADASS---AILSRPIDVSKYDVIYAGAQKNLGPAG--LTVVIVR-PDLLERAESYTLPSIFDYLTHADNGSMYNTP  244 (365)
T ss_pred             ceEEEeccc---HHhcCCCChhHcceEEEehhhccCccc--eEEEEEc-HHHHhcccccCCchHhhchhhhccCCccCCc
Confidence            778888633   122222 33345777888999999999  8999988 6888877553             11122335


Q ss_pred             CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCc
Q 024997          127 SRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREE  206 (259)
Q Consensus       127 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (259)
                      +.+.-+.....++..++.   .=++...++-+++...+.+.+++.+.+.-.         +.. ...+-+.+.+++.+.+
T Consensus       245 ptfa~y~~~lv~~Wlk~~---GGl~~~~~rn~~ka~~LY~~id~s~fy~~~---------v~~-~~RS~mnV~f~~~~~~  311 (365)
T COG1932         245 PTFAWYLLGLVFKWLKSQ---GGLEALEARNQAKAQLLYDWIDKSDFYRNL---------VAK-ANRSRMNVTFTLVDAE  311 (365)
T ss_pred             HHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHhCCccccc---------cch-hhccceeEEEEcCcHH
Confidence            556666666666654322   234556777788888889998876543211         111 3455566777766442


Q ss_pred             -hHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          207 -DKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       207 -~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                       .+.+...++++|+...-|..  .. +.+|+|+..  +.++++.+++-++.+.+
T Consensus       312 ld~~fv~eae~~gl~~lkGhr--~v-gGmRasiynA~~~e~veaL~~fm~~f~~  362 (365)
T COG1932         312 LDKGFVAEAEAAGLIYLKGHR--SV-GGLRASIYNAVPLEDVEALTDFMDWFEE  362 (365)
T ss_pred             HHHHHHHHHHHcCCceecccc--CC-CceeeeeecCCCHHHHHHHHHHHHHHHH
Confidence             23444455567877777732  22 449999865  88999999888887754

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=97.05  E-value=9.6e-05  Score=61.84  Aligned_cols=97  Identities=10%  Similarity=-0.052  Sum_probs=63.0

Q ss_pred             cccChhhhcccCC------CCceEEEEcCCCCCC-hhhH--------HHhhcCCCcEEEeeccccCCC----CCCCCC-C
Q 024997           21 FEGEANLWGNASS------DTHLVEFVTAPNNPD-GQMN--------KAVLKGPYAKSIYDHAYFWPH----FAPIPA-P   80 (259)
Q Consensus        21 ~~~d~~~l~~~~~------~~~~~i~i~~p~NPt-G~~~--------~~la~~~~~~vi~De~y~~~~----~~~~~~-~   80 (259)
                      -.+++++|++.+.      +.+++|.+++|+|-. |.++        .++|+++|+.+..|.+=++..    ...+.. .
T Consensus       104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~  183 (290)
T PF01212_consen  104 GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIA  183 (290)
T ss_dssp             TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHh
Confidence            3588888998872      468999999999986 5555        289999999999998753110    001111 2


Q ss_pred             CCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh
Q 024997           81 ADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS  120 (259)
Q Consensus        81 ~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~  120 (259)
                      ..-+.+..|+||.+|.++  -+.++++ ++++++......
T Consensus       184 ~~~D~v~~~~tK~~g~~~--Gavl~~~-~~~i~~~~~~~k  220 (290)
T PF01212_consen  184 AGADSVSFGGTKNGGAPG--GAVLAGN-KEFIAKARRQRK  220 (290)
T ss_dssp             TTSSEEEEETTSTT-SSS--EEEEEES-HHHHHHHHHHHH
T ss_pred             hhCCEEEEEEEccccccc--ceEEEec-hHHHHHHHHHHH
Confidence            345788899999988765  2455556 787776655443

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=96.97  E-value=0.051  Score=46.14  Aligned_cols=212  Identities=17%  Similarity=0.160  Sum_probs=118.2

Q ss_pred             ccChhhhcccCC----CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeec------ccc----CCC--CCC
Q 024997           22 EGEANLWGNASS----DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDH------AYF----WPH--FAP   76 (259)
Q Consensus        22 ~~d~~~l~~~~~----~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De------~y~----~~~--~~~   76 (259)
                      .+|.+.|++.+.    ++...|+++--+|-.|...         .++|++|++.++.|.      +||    ++.  ..+
T Consensus       168 d~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~s  247 (471)
T COG3033         168 NFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWS  247 (471)
T ss_pred             ccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCccccccc
Confidence            466778888873    3344544444455544433         289999999999995      454    111  122


Q ss_pred             CCC-----CCCCeEEEecccccc-CCCcceEEEEEecCHH---HHHHHHHhhh-----hhcCCCCHHHHHHHHHHHHHHH
Q 024997           77 IPA-----PADEELMIFTISKLT-GHAGSRFGWAVIKDEA---VYQRMSAYIS-----LNTMGVSRECQLRAFKLLKVVL  142 (259)
Q Consensus        77 ~~~-----~~~~~i~~~S~SK~~-g~~G~R~G~i~~~~~~---~~~~~~~~~~-----~~~~~~~~~~q~~~~~~l~~~~  142 (259)
                      +.+     ..-.+-...|.-|-- ---|   |+++..|+.   +-..++...-     ....+.+.=...+.+..|.+  
T Consensus       248 I~~IarEm~sYaD~~~mS~KKD~lvnmG---Gfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e--  322 (471)
T COG3033         248 IEEIAREMYSYADGCTMSAKKDGLVNMG---GFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLRE--  322 (471)
T ss_pred             HHHHHHHHHhhhhhheeeccccceeccc---cEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHHHHH--
Confidence            220     011122344555552 1245   788888753   4444443221     11223333333444444543  


Q ss_pred             hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC----------chHHHHH
Q 024997          143 EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE----------EDKDCYG  212 (259)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~  212 (259)
                       +-..+|+..+.+    ..+++.+.|++.+              ++...|.||=-++++....          ...+..+
T Consensus       323 -~~~~~yl~~Rv~----Qv~YL~~~l~~~G--------------Vpi~~paGGHavfvda~~~lphip~eqFpaqala~e  383 (471)
T COG3033         323 -GVNFDYLAHRVA----QVQYLADGLEEAG--------------VPIVQPAGGHAVFVDAGKFLPHIPAEQFPAQALACE  383 (471)
T ss_pred             -hcCcHHHHHHHH----HHHHHHHHHHhcC--------------CeeEecCCCceEEeehhhhcCCCChhhCcHHHHHHH
Confidence             123344433333    3345556666554              5556777777777775432          3467778


Q ss_pred             HHHHcCeeeecCCcccC------------CCCeEEEEeec---ChhhHHHHHHHHHHHhh
Q 024997          213 ILKAAKIIGREGKKFRA------------EARFVRLSLLK---SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       213 ll~~~gi~~~~g~~f~~------------~~~~~Ris~~~---~~~~~~~~~~~l~~~l~  257 (259)
                      +.++.||-..-.-.|..            +...+|+++-+   +.+.++..++.++++++
T Consensus       384 ly~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e  443 (471)
T COG3033         384 LYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKE  443 (471)
T ss_pred             HHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHh
Confidence            88888997655333321            12469999954   78889988888888765

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=96.44  E-value=0.0086  Score=50.88  Aligned_cols=92  Identities=17%  Similarity=0.245  Sum_probs=58.6

Q ss_pred             ccChhhhcccCCCCceEEEEcCC----CCCChhhH--H---Hhhc--CCCcEEEeeccc--c-CCCCCCCCCCCCCeEEE
Q 024997           22 EGEANLWGNASSDTHLVEFVTAP----NNPDGQMN--K---AVLK--GPYAKSIYDHAY--F-WPHFAPIPAPADEELMI   87 (259)
Q Consensus        22 ~~d~~~l~~~~~~~~~~i~i~~p----~NPtG~~~--~---~la~--~~~~~vi~De~y--~-~~~~~~~~~~~~~~i~~   87 (259)
                      .+|.+.+++.+++++++++|.--    .-|+=.+-  .   +..+  ..++++++|++|  | +...   +..-.-+++.
T Consensus       141 ~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~E---P~~vGADl~a  217 (403)
T PF06838_consen  141 TIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQE---PTEVGADLMA  217 (403)
T ss_dssp             SB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS----GGGGT-SEEE
T ss_pred             CcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccC---ccccchhhee
Confidence            78888999999999999776542    12433332  1   3333  478999999999  5 2111   1122458999


Q ss_pred             eccccccC----CCcceEEEEEecCHHHHHHHHHhhh
Q 024997           88 FTISKLTG----HAGSRFGWAVIKDEAVYQRMSAYIS  120 (259)
Q Consensus        88 ~S~SK~~g----~~G~R~G~i~~~~~~~~~~~~~~~~  120 (259)
                      ||+-|-.|    .+|   |||++. +++++.......
T Consensus       218 GSLIKNpGGgiAptG---GYIaGr-~~lVe~~a~RLT  250 (403)
T PF06838_consen  218 GSLIKNPGGGIAPTG---GYIAGR-KDLVERAAYRLT  250 (403)
T ss_dssp             EETTSGGGTTT-SS----EEEEES-HHHHHHHHHHHS
T ss_pred             ccceeCCCCCccCcC---CEEech-HHHHHHHHhhhc
Confidence            99999975    366   999999 899998876543

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=96.39  E-value=0.035  Score=48.37  Aligned_cols=161  Identities=13%  Similarity=0.057  Sum_probs=91.7

Q ss_pred             chhhhhhccCcc------cccccChhhhcccCC----C-C-ceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc
Q 024997            7 YQEQTDYFESVD------YKFEGEANLWGNASS----D-T-HLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY   69 (259)
Q Consensus         7 ~~~~~~~~g~~~------~~~~~d~~~l~~~~~----~-~-~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y   69 (259)
                      ..+.+..+|..+      ..+.+|.++|++.+.    . . +.+|+.+..+-.||.+=     .++|+++|+|+-+|.+|
T Consensus       154 ~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~  233 (373)
T PF00282_consen  154 IEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAY  233 (373)
T ss_dssp             HHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETT
T ss_pred             HHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeecccc
Confidence            345556666544      236788888988772    2 2 33566666788899885     48999999999999999


Q ss_pred             c-----CCCCCCC-CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHH----Hhhh-------------hhcCCC
Q 024997           70 F-----WPHFAPI-PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMS----AYIS-------------LNTMGV  126 (259)
Q Consensus        70 ~-----~~~~~~~-~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~----~~~~-------------~~~~~~  126 (259)
                      -     .+..... .+...-+=+.-+++|.++ .-...|++...++.......    .+..             ..+...
T Consensus       234 gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~-~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~  312 (373)
T PF00282_consen  234 GGSALLSPEYRHLLFGIERADSITIDPHKWLG-VPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQG  312 (373)
T ss_dssp             GGGGGGHCTTGGGGTTGGGESEEEEETTTTTS--SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSS
T ss_pred             cccccccccccccccccccccccccchhhhhc-CCccceeEEeecccchHHHhccChhhhcccccccccccccccccccc
Confidence            2     1222221 122333445778899997 44678999888654443221    1111             012233


Q ss_pred             CHHHHHHHHHH--HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCC
Q 024997          127 SRECQLRAFKL--LKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNR  173 (259)
Q Consensus       127 ~~~~q~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  173 (259)
                      +. ...++..+  ++..    +.+-+.+..++..+..+.+.+.+++.+.
T Consensus       313 SR-~~~alk~w~~l~~~----G~~G~~~~i~~~~~~a~~l~~~l~~~~~  356 (373)
T PF00282_consen  313 SR-RFRALKLWATLKSL----GREGYRERIRRCIELARYLADRLRKDPR  356 (373)
T ss_dssp             SG-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred             cc-cchHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            33 11211111  1211    2334667777888888889999988775

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=96.39  E-value=0.056  Score=47.57  Aligned_cols=192  Identities=13%  Similarity=0.119  Sum_probs=87.1

Q ss_pred             CCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCC--CCCCCCeEEEeccccccCC----CcceE
Q 024997           33 SDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPI--PAPADEELMIFTISKLTGH----AGSRF  101 (259)
Q Consensus        33 ~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~--~~~~~~~i~~~S~SK~~g~----~G~R~  101 (259)
                      ++++..+++.+||. .|.+-     .++++++|+.+++ .+-. .....+  |+..+-+|++++ +|.||.    -|=-.
T Consensus       195 ~~~~a~v~vq~Pn~-~G~~ed~~~i~~~~h~~gal~~~-~ad~-~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~~GGP~~  270 (429)
T PF02347_consen  195 DDDTAAVMVQNPNT-FGVFEDIKEIADIAHAAGALVIV-GADP-NALGGLKSPGEYGADIVVGE-HQTFGIPMGFGGPGA  270 (429)
T ss_dssp             STTEEEEEEESS-T-TSB--THHHHHHHHHHTT-EEEE-CGGC-CGCCTC--GGGGT-SEEEEC-CTTTT---CCC-S--
T ss_pred             ccCeEEEEeecCCC-CceEeeHHHHHHHHHHcCCEEEE-ecCH-HHHhCcCChhhcCccEEeeC-CCCCcccCCCCCCCe
Confidence            56889999999984 44443     5899999998887 4331 011111  133445677777 777753    22237


Q ss_pred             EEEEecCHHHHHHHH----------------------------HhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHH
Q 024997          102 GWAVIKDEAVYQRMS----------------------------AYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFG  153 (259)
Q Consensus       102 G~i~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~  153 (259)
                      |++.+. +++..++-                            +-+.....|.+....+..+.++-..   .+.+=+.+.
T Consensus       271 G~~a~~-~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~---~G~~GL~~i  346 (429)
T PF02347_consen  271 GFFAVR-EDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAY---LGPEGLREI  346 (429)
T ss_dssp             EEEEE--GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHH---HHHHHHHHH
T ss_pred             eeEEEh-hhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHH---hCHHHHHHH
Confidence            888888 46655541                            1111223444443322222222221   133345666


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCee--EEEecCCCchHHHHHHHHHcCeeeecCCcccCCC
Q 024997          154 YNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAY--AWVKCEREEDKDCYGILKAAKIIGREGKKFRAEA  231 (259)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~  231 (259)
                      -+..-.+..++.+.|+++....               .....+|  +....+  + ....+++ +.++.--- .......
T Consensus       347 A~~~~~~A~yl~~~L~~~~~~~---------------~~~~~f~e~v~~~~~--~-~~~~~l~-~~~~~~gl-~~~~~~~  406 (429)
T PF02347_consen  347 AERIHLNAHYLAERLKKIYGLP---------------FDNPFFFEFVVVFSK--D-KEVEELL-KRGIEGGL-NLRYPDD  406 (429)
T ss_dssp             HHHHHHHHHHHHHHHCCTTBEC---------------SSSSSBSSEEEEESS----HHHHHHH-HTT----E-EEGGG-S
T ss_pred             HHHHHHHHHHHHHHHHHhcCcc---------------cCCCCceeeeeecCC--c-HHHHHHH-HHHHhcCC-CccccCC
Confidence            6777777888888887652111               1112232  222222  1 3333443 33333211 1111334


Q ss_pred             CeEEEEeec--ChhhHHHHHHHH
Q 024997          232 RFVRLSLLK--SQDDFDLLLHRL  252 (259)
Q Consensus       232 ~~~Ris~~~--~~~~~~~~~~~l  252 (259)
                      +.+-+|+.-  ++++++.+++.+
T Consensus       407 ~~~li~~TE~~t~edid~lv~~f  429 (429)
T PF02347_consen  407 GALLICVTETRTKEDIDRLVEAF  429 (429)
T ss_dssp             SEEEEE--TT--HHHHHHHHH--
T ss_pred             CeEEEEccCCCCHHHHHHHHhcC
Confidence            577788754  778888877653

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>PRK12566 glycine dehydrogenase; Provisional

Probab=96.27  E-value=0.37  Score=46.58  Aligned_cols=203  Identities=11%  Similarity=0.041  Sum_probs=107.0

Q ss_pred             cccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc-cCCCCCCCCCCCCCeEEEecc---c
Q 024997           21 FEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY-FWPHFAPIPAPADEELMIFTI---S   91 (259)
Q Consensus        21 ~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y-~~~~~~~~~~~~~~~i~~~S~---S   91 (259)
                      +++..+++++.+.+++..+++.+|| -.|.+.     .+++++.|+++|+- +- ..-....-++..+-+|.+++.   .
T Consensus       194 ~~i~~~~~~~~~~~~~~~v~vq~P~-~~G~i~d~~~i~~~~h~~gal~~~~-~d~laL~ll~~Pge~GADI~vG~~Q~fG  271 (954)
T PRK12566        194 FELVVDAVDNLAAHAVFGALLQYPD-THGEIRDLRPLIDQLHGQQALACVA-ADLLSLLVLTPPGELGADVVLGSTQRFG  271 (954)
T ss_pred             cEEEEcchhhcCCCCEEEEEEECCC-CceEEccHHHHHHHHHHcCCEEEEE-eCHHHHhCCCChhhcCCcEEeeCCCcCC
Confidence            3444566666666678888888886 567664     37889999876533 22 000011112344456666532   1


Q ss_pred             --cccCCCcceEEEEEecCHHHHHHH----------------------------HHhhhhhcCCCCHHHHHHHHHHHHHH
Q 024997           92 --KLTGHAGSRFGWAVIKDEAVYQRM----------------------------SAYISLNTMGVSRECQLRAFKLLKVV  141 (259)
Q Consensus        92 --K~~g~~G~R~G~i~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~q~~~~~~l~~~  141 (259)
                        =.||.|+  .||+.+. +++..++                            ++-+.....|.+....+.++.++-..
T Consensus       272 vp~~~GGP~--ag~~a~~-~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~  348 (954)
T PRK12566        272 VPMGYGGPH--AAYFACR-DDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVY  348 (954)
T ss_pred             CCCCCCCCC--eeeeeeh-HHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHH
Confidence              2233344  7888888 4665554                            11111222333332222333333221


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCee--EEEecCCCchHHHHHHHHHcCe
Q 024997          142 LEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAY--AWVKCEREEDKDCYGILKAAKI  219 (259)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~gi  219 (259)
                         .+.+=+.+.-++...+...+.+.|++.+ +.+             ...  .+|  +.+++.. +.+.+.....+.||
T Consensus       349 ---~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g-~~~-------------~~~--~fF~~~~v~~~~-~~~~~~~~a~~~~~  408 (954)
T PRK12566        349 ---HGPEGLKRIAQRVHRLTAILAAGLEAKG-IKR-------------LNR--HFFDTLTLEVGG-AQAAIIESAEAARI  408 (954)
T ss_pred             ---hChHHHHHHHHHHHHHHHHHHHHHHhcC-Ccc-------------ccC--CccceEEEEccC-CHHHHHHHHHHCCC
Confidence               1233344555556667777777787733 221             111  222  2233321 24445455556788


Q ss_pred             eeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHH
Q 024997          220 IGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLD  253 (259)
Q Consensus       220 ~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~  253 (259)
                      -++-     .+.+.+.+|+..  +.++++.++..+.
T Consensus       409 n~r~-----~~~~~~~~s~de~~~~~~~~~~~~~f~  439 (954)
T PRK12566        409 NLRI-----LGRGRLGVSLDETCDEATVARLFDIFL  439 (954)
T ss_pred             eeEE-----eCCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence            8876     234678888854  7788888888773

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=95.65  E-value=1.4  Score=38.61  Aligned_cols=206  Identities=14%  Similarity=0.105  Sum_probs=107.4

Q ss_pred             ChhhhcccCCCCceEEEEcCCCCCChhhH------HHhhcCCCcEEEeeccccCCCCC---CCCCCCCCeEEEeccccc-
Q 024997           24 EANLWGNASSDTHLVEFVTAPNNPDGQMN------KAVLKGPYAKSIYDHAYFWPHFA---PIPAPADEELMIFTISKL-   93 (259)
Q Consensus        24 d~~~l~~~~~~~~~~i~i~~p~NPtG~~~------~~la~~~~~~vi~De~y~~~~~~---~~~~~~~~~i~~~S~SK~-   93 (259)
                      |.+.|++....++..+++..|+ -.|...      .+.++.+|+++++=.   .+--.   .-|+..+-+|++|+..-+ 
T Consensus       199 d~~~l~~~~~~~~~gv~vQyP~-~~G~~~~d~~~l~~~~h~~~al~~v~a---DplaL~LL~pPGe~GADIvvG~~QrfG  274 (450)
T COG0403         199 DLDDLESADDGDVFGVLVQYPN-TFGIVEEDLRALIEAAHSAGALVIVAA---DPLALGLLKPPGEFGADIVVGSAQRFG  274 (450)
T ss_pred             hhhhhhhccccCeEEEEEecCC-CCCccchhHHHHHHHHhhcCCEEEEEe---chhHhhccCCccccCCceEEecCcccC
Confidence            4556666623477888888887 666333      378889988777653   22111   112445567888776644 


Q ss_pred             --cCCCcceEEEEEecCHHHHHHH----------------------------HHhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 024997           94 --TGHAGSRFGWAVIKDEAVYQRM----------------------------SAYISLNTMGVSRECQLRAFKLLKVVLE  143 (259)
Q Consensus        94 --~g~~G~R~G~i~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~q~~~~~~l~~~~~  143 (259)
                        +|.-|=-.||..+. +++..++                            ++-+.....|.+....+.++.+.-.+  
T Consensus       275 vPmgfGGPhag~fA~~-~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~--  351 (450)
T COG0403         275 VPMGFGGPHAGYFAVK-DEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVY--  351 (450)
T ss_pred             CCcCCCCcceeeeeEh-HhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHH--
Confidence              22334457888887 4655443                            11122223343333333333333332  


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCe--eEEEecCCCchHHHHHHHHHcCeee
Q 024997          144 DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPA--YAWVKCEREEDKDCYGILKAAKIIG  221 (259)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~gi~~  221 (259)
                       .+.+=+.+.-++.-+....+.+.|++.+.    .        +.....  .+  -+.++++....+.+.+.....|+-+
T Consensus       352 -hGp~GLk~iA~r~~~~a~~la~~L~~~~~----g--------~~~~~~--~fFdt~~v~~~~~~~~~l~~~~~~~G~~L  416 (450)
T COG0403         352 -HGPQGLKEIAERIHRLAAYLAAGLKEIGA----G--------VELVFD--HFFDTFTVRVPEEVAEALLAAAIAGGINL  416 (450)
T ss_pred             -hChHHHHHHHHHHHHHHHHHHHHHhhcCC----c--------eEeccc--cceeeEEEecchhHHHHHHHHHHhcCCce
Confidence             23344556666666677777777775431    0        111111  22  2334444211222223333456666


Q ss_pred             ecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHh
Q 024997          222 REGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       222 ~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l  256 (259)
                      +.   ++  ...+=+|+..  ++++++.+++.+....
T Consensus       417 ~~---~~--~~~~~ia~tEt~t~~~i~~l~~~~~~~~  448 (450)
T COG0403         417 RR---VD--ADTVLIALTETTTKEDIDALVAAFGGVN  448 (450)
T ss_pred             ee---ec--CCceEEEeecccCHHHHHHHHHHHhhhc
Confidence            55   22  3466667643  6788998888876543

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=95.04  E-value=0.37  Score=42.00  Aligned_cols=229  Identities=14%  Similarity=0.067  Sum_probs=121.0

Q ss_pred             ccChhhhcccC---CC--CceEEEEcCC-CCCChhhH-----HHhhcCCCcEEEeeccccCCCCC------CCCCCCCCe
Q 024997           22 EGEANLWGNAS---SD--THLVEFVTAP-NNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFA------PIPAPADEE   84 (259)
Q Consensus        22 ~~d~~~l~~~~---~~--~~~~i~i~~p-~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~------~~~~~~~~~   84 (259)
                      ++++++||+.+   ..  .+-+++.++. .-..|..=     +++|++|++|+.+|.++.+.-..      .+.+...-.
T Consensus       234 km~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~  313 (510)
T KOG0629|consen  234 KMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERAN  313 (510)
T ss_pred             ccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHhhccCccccC
Confidence            67788898877   12  2335455554 34556553     48999999999999999521111      121222223


Q ss_pred             EEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh------------hhcCCCCHHHHHH-----HHHHHHHHHhcCCc
Q 024997           85 LMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS------------LNTMGVSRECQLR-----AFKLLKVVLEDGGN  147 (259)
Q Consensus        85 i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~------------~~~~~~~~~~q~~-----~~~~l~~~~~~~~~  147 (259)
                      =+..+..|..| +.+..+......+.+++.++....            .... .....|..     ...++..-+.  +.
T Consensus       314 SvtwnpHK~~g-aplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DT-gdK~iQCGRh~D~FKlWlmwkaK--G~  389 (510)
T KOG0629|consen  314 SVTWNPHKLMG-APLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDT-GDKAIQCGRHVDVFKLWLMWKAK--GT  389 (510)
T ss_pred             ceeecHHHhhc-CcchhhHHHHHHHHHHHhhcccchhhhhccCceeeccccc-ccchhhcCccccHHHHHHHHHhc--cc
Confidence            34667789998 667777766654556666544211            0000 11122222     1122222111  23


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCCCccc-cccccccccceeeCCCCCee------EEEecCCCchHHHHHHHHHcCee
Q 024997          148 NIFEFGYNTMKKRWENLSKIISLSNRFSLQ-EIAPQYCTYFKKIRPPSPAY------AWVKCEREEDKDCYGILKAAKII  220 (259)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ll~~~gi~  220 (259)
                      .-+++..++..+..+++.+.+++.+++... ...++..++.-+..|++--.      -+..+.......-..++ +.|..
T Consensus       390 ~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm-~~Gt~  468 (510)
T KOG0629|consen  390 QGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMM-KKGTT  468 (510)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcHHHHHHH-hccce
Confidence            336777888999999999999998875432 22233233211122221000      00000000122333444 34554


Q ss_pred             eecCCcccCCCCeEEEEeec---ChhhHHHHHHHHHHH
Q 024997          221 GREGKKFRAEARFVRLSLLK---SQDDFDLLLHRLDEL  255 (259)
Q Consensus       221 ~~~g~~f~~~~~~~Ris~~~---~~~~~~~~~~~l~~~  255 (259)
                      ...-...+..++++|+-++.   +.++++-.++.|.++
T Consensus       469 Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerl  506 (510)
T KOG0629|consen  469 MIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERL  506 (510)
T ss_pred             eeEecccccccchhheecccchhhhhhHHHHHHHHHHh
Confidence            44322333347899999866   567788888777665

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=92.86  E-value=0.55  Score=39.13  Aligned_cols=86  Identities=17%  Similarity=0.198  Sum_probs=58.3

Q ss_pred             ccChhhhcccCCCCceEEEEcCC----CCCChhhHH-----Hhhc--CCCcEEEeeccc--c-CC-CCCCCCCCCCCeEE
Q 024997           22 EGEANLWGNASSDTHLVEFVTAP----NNPDGQMNK-----AVLK--GPYAKSIYDHAY--F-WP-HFAPIPAPADEELM   86 (259)
Q Consensus        22 ~~d~~~l~~~~~~~~~~i~i~~p----~NPtG~~~~-----~la~--~~~~~vi~De~y--~-~~-~~~~~~~~~~~~i~   86 (259)
                      .+|.+.++..+++++|+|-|.--    .-|+=.+..     +..+  ..|+++.+|++|  | +. ....    -..+++
T Consensus       152 kiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EPt~----vGaDli  227 (416)
T COG4100         152 KIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEPTH----VGADLI  227 (416)
T ss_pred             cccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCccc----cchhhh
Confidence            67888899999999999776542    235555541     3334  368999999999  5 21 1111    133677


Q ss_pred             EeccccccCC----CcceEEEEEecCHHHHHHH
Q 024997           87 IFTISKLTGH----AGSRFGWAVIKDEAVYQRM  115 (259)
Q Consensus        87 ~~S~SK~~g~----~G~R~G~i~~~~~~~~~~~  115 (259)
                      .+|+-|--|.    +|   ||+++. ++++++.
T Consensus       228 AGSLIKNpGGgiaktG---GYiaGk-~~~ve~~  256 (416)
T COG4100         228 AGSLIKNPGGGIAKTG---GYIAGK-AELVEAA  256 (416)
T ss_pred             ccceeeCCCCceeecc---ceeech-HHHHHhh
Confidence            8888887642    45   899988 7888764

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=92.24  E-value=7.9  Score=34.39  Aligned_cols=68  Identities=9%  Similarity=0.066  Sum_probs=40.9

Q ss_pred             ceeeCCCCCeeEEEecCCC---chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec---ChhhHHHHHHHHHHHh
Q 024997          187 FKKIRPPSPAYAWVKCERE---EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK---SQDDFDLLLHRLDELI  256 (259)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~---~~~~~~~~~~~l~~~l  256 (259)
                      |....+..--.+++++++.   +..+..++-....|.+.|.+.-  +.-.+|++++.   +.++++++.+.|.+..
T Consensus       396 FE~~~~~~lgLvcFRlk~~N~~ne~Ll~~in~~g~i~l~~~~l~--gk~vlRf~V~s~~t~~~di~~a~~~I~~~a  469 (511)
T KOG0628|consen  396 FEIVNKRILGLVCFRLKGDNEINEALLNRLNSSGRIHLVPASLH--GKFVLRFAVCSPLTNESDIDEAWKIIFEAA  469 (511)
T ss_pred             ceeecccccceeEEeecCCcHHHHHHHHHHHhcCcEEEEEeeec--ceEEEEEEecCCCCcHHHHHHHHHHHHHHH
Confidence            3333343333445555554   2455555555567777774322  35678999965   6778888888877654

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=87.58  E-value=1.4  Score=38.74  Aligned_cols=102  Identities=12%  Similarity=0.090  Sum_probs=63.3

Q ss_pred             hhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhH------HHhhcCCCcEEEeeccccCCCCCCC-
Q 024997           11 TDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN------KAVLKGPYAKSIYDHAYFWPHFAPI-   77 (259)
Q Consensus        11 ~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~------~~la~~~~~~vi~De~y~~~~~~~~-   77 (259)
                      +.+.|.+++      +-.+|+++|++.+.+++.++.++|||- .|..=      .++.+++|..+..|.+-+ +..... 
T Consensus       174 Aam~G~~VV~V~~~~~G~VDlddLk~k~~~~~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANl-NA~vG~~  251 (496)
T COG1003         174 AAMAGFKVVVVKCDENGNVDLDDLRAKAEDNLAALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANL-NAIVGLA  251 (496)
T ss_pred             HhhcCceEEEEecCCCCCccHHHHHHHhccceeEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcch-hhhhccc
Confidence            445555542      237899999999999999999999972 22221      477889999999998763 111111 


Q ss_pred             -CCCCCCeEEEeccccccCC----CcceEEEEEecCHHHHHHH
Q 024997           78 -PAPADEELMIFTISKLTGH----AGSRFGWAVIKDEAVYQRM  115 (259)
Q Consensus        78 -~~~~~~~i~~~S~SK~~g~----~G~R~G~i~~~~~~~~~~~  115 (259)
                       ++..+-+++=--+.|+|+.    -|=-+|=|... +++.+.+
T Consensus       252 rPGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk-~~L~pfL  293 (496)
T COG1003         252 RPGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVK-AHLAPFL  293 (496)
T ss_pred             cccccccceEEeecccccccCCCCCCCCCCceehH-hhccccC
Confidence             2333445555567777742    12226666666 4555543

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=83.56  E-value=15  Score=34.42  Aligned_cols=151  Identities=13%  Similarity=0.021  Sum_probs=82.7

Q ss_pred             ccccChhhhcccCC----C--CceEEEEcCCCCCChhhH-----HHhh---cCCCc--EEEeeccc--cC-CCC------
Q 024997           20 KFEGEANLWGNASS----D--THLVEFVTAPNNPDGQMN-----KAVL---KGPYA--KSIYDHAY--FW-PHF------   74 (259)
Q Consensus        20 ~~~~d~~~l~~~~~----~--~~~~i~i~~p~NPtG~~~-----~~la---~~~~~--~vi~De~y--~~-~~~------   74 (259)
                      .+++|+++|++.+.    .  .+.+||-+..+-.+|.+=     .++|   +++|+  |+.+|.||  |. .-+      
T Consensus       257 ~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~  336 (608)
T TIGR03811       257 NYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDN  336 (608)
T ss_pred             CCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhcccccc
Confidence            46899999988772    2  234556666677899885     2666   66787  79999999  31 000      


Q ss_pred             -CC-------------C---------------CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhh---
Q 024997           75 -AP-------------I---------------PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN---  122 (259)
Q Consensus        75 -~~-------------~---------------~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~---  122 (259)
                       .+             +               .+...-.=+.-.++|.+. .-.-.|.++..++++.+.+.....+.   
T Consensus       337 ~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~-~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~  415 (608)
T TIGR03811       337 FIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGY-IPYSAGGIVIQDIRMRDVISYFATYVFEK  415 (608)
T ss_pred             ccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccc-cCCCeEEEEEeCHHHHHHHhcCcchhccc
Confidence             00             0               011222335677889975 44567888888776655442211111   


Q ss_pred             -----------cCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhc
Q 024997          123 -----------TMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLS  171 (259)
Q Consensus       123 -----------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  171 (259)
                                 +...+.+.-.++..++..-.-+.+.+-+.+...+..+..+++.+.|+..
T Consensus       416 ~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~  475 (608)
T TIGR03811       416 GADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL  475 (608)
T ss_pred             cccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                       1122222211221111110000122345666777778888888888774

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	259
2hor_A	427	Crystal Structure Of Alliinase From Garlic- Apo For		2e-73
1lk9_A	448	The Three-Dimensional Structure Of Alliinase From G		2e-73
3bwn_A	391	L-Tryptophan Aminotransferase Length = 391		1e-53
3bwn_C	391	L-Tryptophan Aminotransferase Length = 391		5e-53
4fl0_A	456	Crystal Structure Of Ald1 From Arabidopsis Thaliana		9e-04

>pdb|2HOR|A Chain A, Crystal Structure Of Alliinase From Garlic- Apo Form Length = 427

Iteration: 1
 Score =  272 bits (695), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 125/262 (47%), Positives = 183/262 (69%), Gaps = 9/262 (3%)
Query: 2   PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYA 61
           PFYP+++EQT YF+   Y + G A  + N S+    +E VT+PNNP+G +  AV+KG   
Sbjct: 163 PFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKG--C 220
Query: 62  KSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL 121
           KSIYD  Y+WPH+ PI   ADE++++FT+SK TGH+GSRFGWA+IKDE+VY  +  Y++ 
Sbjct: 221 KSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTK 280
Query: 122 NTMGVSRECQLRAFKLLKVVL------EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFS 175
           NT G  RE QLR+ K+LK V+      +    ++  FG+  +++RW N++ ++  S+RFS
Sbjct: 281 NTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFS 340
Query: 176 LQEI-APQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFV 234
            QE+   +YC YF+++RPPSP+YAWVKCE EEDKDCY   +  +I  + G  F A +R+V
Sbjct: 341 YQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYV 400
Query: 235 RLSLLKSQDDFDLLLHRLDELI 256
           RLSL+K+QDDFD L++ L +++
Sbjct: 401 RLSLIKTQDDFDQLMYYLKDMV 422

>pdb|1LK9|A Chain A, The Three-Dimensional Structure Of Alliinase From Garlic Length = 448

Iteration: 1
 Score =  272 bits (695), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 125/262 (47%), Positives = 183/262 (69%), Gaps = 9/262 (3%)
Query: 2   PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYA 61
           PFYP+++EQT YF+   Y + G A  + N S+    +E VT+PNNP+G +  AV+KG   
Sbjct: 163 PFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKG--C 220
Query: 62  KSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL 121
           KSIYD  Y+WPH+ PI   ADE++++FT+SK TGH+GSRFGWA+IKDE+VY  +  Y++ 
Sbjct: 221 KSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTK 280
Query: 122 NTMGVSRECQLRAFKLLKVVL------EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFS 175
           NT G  RE QLR+ K+LK V+      +    ++  FG+  +++RW N++ ++  S+RFS
Sbjct: 281 NTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFS 340
Query: 176 LQEI-APQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFV 234
            QE+   +YC YF+++RPPSP+YAWVKCE EEDKDCY   +  +I  + G  F A +R+V
Sbjct: 341 YQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYV 400
Query: 235 RLSLLKSQDDFDLLLHRLDELI 256
           RLSL+K+QDDFD L++ L +++
Sbjct: 401 RLSLIKTQDDFDQLMYYLKDMV 422

>pdb|3BWN|A Chain A, L-Tryptophan Aminotransferase Length = 391

Iteration: 1
 Score =  206 bits (523), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/259 (40%), Positives = 159/259 (61%), Gaps = 13/259 (5%)
Query: 2   PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGP-- 59
           PFY  Y E+T Y  S  YK+EG+A  WG      + +E VT+PNNPDG + + V+  P  
Sbjct: 127 PFYSTYVEETTYVRSGMYKWEGDA--WGFDKKGPY-IELVTSPNNPDGTIRETVVNRPDD 183
Query: 60  -YAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAY 118
             AK I+D AY+WPH+ PI    D ++M+FT SK+TGHAGSR GWA++KD+ V ++M  Y
Sbjct: 184 DEAKVIHDFAYYWPHYTPITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEY 243
Query: 119 ISLNTMGVSRECQLRAFKLLKVV-----LEDGGNNIFEFGYNTMKKRWENLSKIISLSNR 173
           I +N++GVS+E Q+R  K+L V+      E    N F++G   MK RWE L +++  S+ 
Sbjct: 244 IIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDA 303
Query: 174 FSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARF 233
           F+L +    +C YF K     PA+AW+    +E+ D    L+  K++ R G++  ++ + 
Sbjct: 304 FTLPKYPEAFCNYFGKSLESYPAFAWLGT--KEETDLVSELRRHKVMSRAGERCGSDKKH 361
Query: 234 VRLSLLKSQDDFDLLLHRL 252
           VR+S+L  +D F++ L RL
Sbjct: 362 VRVSMLSREDVFNVFLERL 380

>pdb|3BWN|C Chain C, L-Tryptophan Aminotransferase Length = 391

Iteration: 1
 Score =  204 bits (518), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 104/259 (40%), Positives = 158/259 (61%), Gaps = 13/259 (5%)
Query: 2   PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGP-- 59
           PFY  Y E+T Y  S  YK+EG+A  WG      + +E VT+PNNPDG + + V+  P  
Sbjct: 127 PFYSTYVEETTYVRSGMYKWEGDA--WGFDKKGPY-IELVTSPNNPDGTIRETVVNRPDD 183
Query: 60  -YAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAY 118
             AK I+D AY+WPH+ PI    D ++M+FT S +TGHAGSR GWA++KD+ V ++M  Y
Sbjct: 184 DEAKVIHDFAYYWPHYTPITRRQDHDIMLFTFSXITGHAGSRIGWALVKDKEVAKKMVEY 243
Query: 119 ISLNTMGVSRECQLRAFKLLKVV-----LEDGGNNIFEFGYNTMKKRWENLSKIISLSNR 173
           I +N++GVS+E Q+R  K+L V+      E    N F++G   MK RWE L +++  S+ 
Sbjct: 244 IIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDA 303
Query: 174 FSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARF 233
           F+L +    +C YF K     PA+AW+    +E+ D    L+  K++ R G++  ++ + 
Sbjct: 304 FTLPKYPEAFCNYFGKSLESYPAFAWLGT--KEETDLVSELRRHKVMSRAGERCGSDKKH 361
Query: 234 VRLSLLKSQDDFDLLLHRL 252
           VR+S+L  +D F++ L RL
Sbjct: 362 VRVSMLSREDVFNVFLERL 380

>pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana Length = 456

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 23/127 (18%)
Query: 7   YQEQTDYFESVDYKFEGEANLW--GNASSDTHLVEFVTAPNNPDG------QMNKAVLKG 58
           + E+T  +++V Y   G  N +    A +    V F  +PNNP G      Q+++ V   
Sbjct: 182 FHEKTKKYQNVVYMPCGPNNSFFPDLAMTPRTDVIFFCSPNNPTGYVASRKQLHQLV--- 238
Query: 59  PYAKS-----IYDHAY--FWPHFAP-----IPAPADEELMIFTISKLTGHAGSRFGWAVI 106
            +AK+     I+D AY  F    +P     IP   +  + + + SK  G  G R GW++I
Sbjct: 239 DFAKTNGSIIIFDSAYAAFIEDGSPRSIYEIPGAREVAIEVSSFSKFAGFTGVRLGWSII 298
Query: 107 KDEAVYQ 113
            DE +Y 
Sbjct: 299 PDELLYS 305

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	1e-87
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	4e-84

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427

 Score =  266 bits (680), Expect = 1e-87
 Identities = 125/265 (47%), Positives = 183/265 (69%), Gaps = 9/265 (3%)

Query: 2   PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYA 61
           PFYP+++EQT YF+   Y + G A  + N S+    +E VT+PNNP+G +  AV+KG   
Sbjct: 163 PFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKG--C 220

Query: 62  KSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL 121
           KSIYD  Y+WPH+ PI   ADE++++FT+SK TGH+GSRFGWA+IKDE+VY  +  Y++ 
Sbjct: 221 KSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTK 280

Query: 122 NTMGVSRECQLRAFKLLKVVLE------DGGNNIFEFGYNTMKKRWENLSKIISLSNRFS 175
           NT G  RE QLR+ K+LK V+           ++  FG+  +++RW N++ ++  S+RFS
Sbjct: 281 NTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFS 340

Query: 176 LQEI-APQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFV 234
            QE+   +YC YF+++RPPSP+YAWVKCE EEDKDCY   +  +I  + G  F A +R+V
Sbjct: 341 YQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYV 400

Query: 235 RLSLLKSQDDFDLLLHRLDELISKE 259
           RLSL+K+QDDFD L++ L +++  +
Sbjct: 401 RLSLIKTQDDFDQLMYYLKDMVKAK 425

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391

 Score =  255 bits (653), Expect = 4e-84
 Identities = 101/266 (37%), Positives = 157/266 (59%), Gaps = 13/266 (4%)

Query: 2   PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYA 61
           PFY  Y E+T Y  S  YK+EG+A            +E VT+PNNPDG + + V+  P  
Sbjct: 127 PFYSTYVEETTYVRSGMYKWEGDAW---GFDKKGPYIELVTSPNNPDGTIRETVVNRPDD 183

Query: 62  KS---IYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAY 118
                I+D AY+WPH+ PI    D ++M+FT SK+TGHAGSR GWA++KD+ V ++M  Y
Sbjct: 184 DEAKVIHDFAYYWPHYTPITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEY 243

Query: 119 ISLNTMGVSRECQLRAFKLLKVVLEDGGN-----NIFEFGYNTMKKRWENLSKIISLSNR 173
           I +N++GVS+E Q+R  K+L V+ E   +     N F++G   MK RWE L +++  S+ 
Sbjct: 244 IIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDA 303

Query: 174 FSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARF 233
           F+L +    +C YF K     PA+AW+    +E+ D    L+  K++ R G++  ++ + 
Sbjct: 304 FTLPKYPEAFCNYFGKSLESYPAFAWLGT--KEETDLVSELRRHKVMSRAGERCGSDKKH 361

Query: 234 VRLSLLKSQDDFDLLLHRLDELISKE 259
           VR+S+L  +D F++ L RL  +   +
Sbjct: 362 VRVSMLSREDVFNVFLERLANMKLIK 387

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	100.0
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	100.0
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	100.0
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	100.0
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	100.0
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	100.0
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	100.0
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	100.0
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	100.0
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	100.0
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	100.0
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	100.0
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	100.0
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	100.0
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	100.0
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	100.0
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	100.0
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	100.0
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	100.0
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	100.0
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	100.0
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	100.0
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	100.0
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	100.0
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	100.0
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	100.0
3ele_A	398	Amino transferase; RER070207001803, structural gen	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	100.0
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	100.0
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	100.0
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	100.0
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	100.0
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	100.0
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	100.0
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	100.0
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	100.0
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	100.0
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	100.0
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	100.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	100.0
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	100.0
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	100.0
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	100.0
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	100.0
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	100.0
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	100.0
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	100.0
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	100.0
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	100.0
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	100.0
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.98
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.98
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.98
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.98
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.97
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.97
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.97
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.97
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.97
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.97
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.97
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.97
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.97
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.97
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.97
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.97
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.97
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.95
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.97
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.97
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.97
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.97
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.97
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.97
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.97
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.97
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.97
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.96
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.96
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.96
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.95
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.95
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.95
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.94
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.94
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.94
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.94
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.94
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.93
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.93
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.93
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.92
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.92
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.92
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.92
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.92
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.91
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.91
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.91
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.91
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.91
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.91
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.91
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.91
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.91
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.91
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.91
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.91
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.91
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.91
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.9
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.9
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.9
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.9
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.9
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.9
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.9
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.9
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.9
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.9
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.9
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.9
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.9
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.89
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.89
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.89
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.89
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.89
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.89
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.89
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.89
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.89
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.88
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.88
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.88
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.88
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.88
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.87
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.87
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.87
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.86
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.86
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.86
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.86
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.86
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.86
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.86
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.86
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.85
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.85
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.85
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.85
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.85
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.85
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.85
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.85
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.85
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.84
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.84
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.84
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.84
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.83
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.83
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.83
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.82
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.82
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.82
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.82
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.82
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.82
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.82
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.82
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.82
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.82
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.82
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.81
1svv_A	359	Threonine aldolase; structural genomics, structura	99.81
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.81
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.81
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.81
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.8
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.8
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.8
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.8
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.79
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.79
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.79
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.78
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.78
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.78
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.78
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.77
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.77
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.77
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.76
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.75
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.74
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.74
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.74
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.74
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.72
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.72
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.72
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.72
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.71
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.7
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.68
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.51
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.68
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.68
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.68
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.66
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.66
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.64
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.64
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.63
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.62
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.62
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.61
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.58
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.56
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.56
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.55
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.5
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.49
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.48
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.45
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.36
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.29
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.19
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.16
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.07
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.01
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	98.9
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	98.69
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	98.22

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=100.00  E-value=2.3e-38  Score=274.80  Aligned_cols=252  Identities=39%  Similarity=0.770  Sum_probs=198.0

Q ss_pred             CCCcccchhhhhhccCcccccccChhhhcccCCCCceEEEEcCCCCCChhhHHHhhcC-CC--cEEEeeccccCCCCCCC
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKG-PY--AKSIYDHAYFWPHFAPI   77 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~la~~-~~--~~vi~De~y~~~~~~~~   77 (259)
                      +|+|+.|...++..|.++..+.+|.+.++   .++++++++++||||||.++++++++ ++  ++||+||+|+.++...+
T Consensus       126 ~P~y~~~~~~~~~~g~~~~~~~~d~~~l~---~~~~k~v~l~~p~NPtG~~~~~l~~~~~~~~~~ii~De~y~~~~~~~l  202 (391)
T 3bwn_A          126 APFYSTYVEETTYVRSGMYKWEGDAWGFD---KKGPYIELVTSPNNPDGTIRETVVNRPDDDEAKVIHDFAYYWPHYTPI  202 (391)
T ss_dssp             SSCCTHHHHHHHTTCBTTEEEEEESTTCC---CCSCEEEEEESSCTTTCCCCCCCC-----CCCEEEEECTTCSTTTSCC
T ss_pred             CCCchhHHHHHHHcCCeEEEecCCHHHcC---CCCCEEEEECCCCCCCchhHHHHHHHhhcCCCEEEEeCCCCCCCCCcc
Confidence            59999999999999998888888877666   35789999999999999999888766 66  99999999964333334


Q ss_pred             CCCCCCeEEEeccccccCCCcceEEEEEe-cCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhc-----CCcchHH
Q 024997           78 PAPADEELMIFTISKLTGHAGSRFGWAVI-KDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLED-----GGNNIFE  151 (259)
Q Consensus        78 ~~~~~~~i~~~S~SK~~g~~G~R~G~i~~-~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~-----~~~~~~~  151 (259)
                      ....+++++++||||+||++|+|+||+++ + +++++.+.........+++.+.|.++..+++...+.     ..+.+++
T Consensus       203 ~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~  281 (391)
T 3bwn_A          203 TRRQDHDIMLFTFSKITGHAGSRIGWALVKD-KEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFK  281 (391)
T ss_dssp             CCCBCCSEEEEEHHHHHSCGGGCEEEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHH
T ss_pred             ccCCCCeEEEEechhhcCCCccceEEEEecC-HHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHH
Confidence            33567899999999999999999999998 6 799999998887667889999999999999852100     0256889


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCC
Q 024997          152 FGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEA  231 (259)
Q Consensus       152 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~  231 (259)
                      +.++.++++++.+.+.|++++++.+....+...+++....+.+|+|+|++++.  .+.+..+++++||.++||+.|+.++
T Consensus       282 ~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~--~~~~~~~l~~~gV~v~pg~~fg~~~  359 (391)
T 3bwn_A          282 YGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE--ETDLVSELRRHKVMSRAGERCGSDK  359 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS--SCCHHHHHHHTTEECEEGGGGTCCT
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCc--HHHHHHHHHHCCEEEccCCCCCCCC
Confidence            99999999999999999987543322111111222222346788999999974  3567778888999999999998756


Q ss_pred             CeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          232 RFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       232 ~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +++|||++.+++++++++++|++++++
T Consensus       360 ~~iRis~~~~~e~i~~~~~~L~~~~~~  386 (391)
T 3bwn_A          360 KHVRVSMLSREDVFNVFLERLANMKLI  386 (391)
T ss_dssp             TEEEEESCSCHHHHHHHHHHHHSCC--
T ss_pred             CEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            899999988889999999999988764

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=100.00  E-value=2.1e-37  Score=271.57  Aligned_cols=256  Identities=48%  Similarity=0.940  Sum_probs=209.6

Q ss_pred             CCCcccchhhhhhccCcccccccChhhhcccCCCCceEEEEcCCCCCChhhHHHhhcCCCcEEEeeccccCCCCCCCCC-
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAYFWPHFAPIPA-   79 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~la~~~~~~vi~De~y~~~~~~~~~~-   79 (259)
                      +|+|+.|...++..|.++..|.+|++.|++.+++++++++++|||||||.+++++++  ++..|.|++||++. .++.. 
T Consensus       162 ~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~~~l~--~~~~i~d~~~~~~~-~s~~~~  238 (427)
T 2hox_A          162 APFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIK--GCKSIYDMVYYWPH-YTPIKY  238 (427)
T ss_dssp             SSCCHHHHHHHHHSCBTTEEEEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCCCSST--TCEEEEECTTCSTT-TSCCCS
T ss_pred             CCCcccHHHHHHHcCCeeeeecCCHHHHHHhhcCCceEEEEcCCCCCcccccHHHHc--CCCEEEeecccCCC-CCcccc
Confidence            599999999999999998889999999999988889999999999999999985554  56788999887522 22221 


Q ss_pred             CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhc------CCcchHHHH
Q 024997           80 PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLED------GGNNIFEFG  153 (259)
Q Consensus        80 ~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~------~~~~~~~~~  153 (259)
                      ..+++++++||||.+|++|+|+||++++++++++.+.........+++.+.|.++..+|+...+.      ..++++.+.
T Consensus       239 ~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~  318 (427)
T 2hox_A          239 KADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFG  318 (427)
T ss_dssp             CBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHH
T ss_pred             CCCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHH
Confidence            26789999999999999999999999954799999999888777899999999999998852110      135678888


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcccccc-ccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCC
Q 024997          154 YNTMKKRWENLSKIISLSNRFSLQEIA-PQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEAR  232 (259)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~  232 (259)
                      ++.++++++.+.+.|++++++.+..+. +.+++++.+..|++|+|+|++++..+.+++..+++++||.++||..|+.+++
T Consensus       319 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~  398 (427)
T 2hox_A          319 FKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSR  398 (427)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTT
T ss_pred             HHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCcHHHHHHHHHHHCCEEEcCCCccCCCCC
Confidence            999999999999999987654432122 3344445667899999999999753456677778889999999999986568


Q ss_pred             eEEEEeecChhhHHHHHHHHHHHhhhC
Q 024997          233 FVRLSLLKSQDDFDLLLHRLDELISKE  259 (259)
Q Consensus       233 ~~Ris~~~~~~~~~~~~~~l~~~l~~~  259 (259)
                      ++|||++.+++++++++++|++++++|
T Consensus       399 ~~Ris~~~~~e~l~~~l~~l~~~~~~~  425 (427)
T 2hox_A          399 YVRLSLIKTQDDFDQLMYYLKDMVKAK  425 (427)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHTCC
T ss_pred             EEEEEecCCHHHHHHHHHHHHHHHhhc
Confidence            999999888899999999999998764

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=100.00  E-value=4.2e-36  Score=259.84  Aligned_cols=240  Identities=18%  Similarity=0.233  Sum_probs=191.9

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        +|.+|+++|++.++++++++++++||||||.++        .++|+++|++||
T Consensus       122 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li  201 (385)
T 1b5p_A          122 SPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLV  201 (385)
T ss_dssp             ESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEE
Confidence            4899999999998887652        356888999999988899999999999999986        278999999999


Q ss_pred             eeccc--c--CCCCCCCCC-CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q 024997           65 YDHAY--F--WPHFAPIPA-PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLK  139 (259)
Q Consensus        65 ~De~y--~--~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~  139 (259)
                      +||+|  +  .....++.. ..+++++++||||.+|++|+|+||++++ +++++.+.......+.+++.+.|.++.++++
T Consensus       202 ~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~  280 (385)
T 1b5p_A          202 SDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGP-KEVIKAMASVSRQSTTSPDTIAQWATLEALT  280 (385)
T ss_dssp             EECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECC-HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHH
T ss_pred             EEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEEeC-HHHHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence            99999  2  111112211 1178999999999999999999999998 7999999887776677899999999988887


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC--CchHHHHHHHHHc
Q 024997          140 VVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--EEDKDCYGILKAA  217 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~  217 (259)
                      ....  ...++++.++.++++++.+.+.|++++              +.+..+++++|+|++++.  .+.+.+.+.|.++
T Consensus       281 ~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  344 (385)
T 1b5p_A          281 NQEA--SRAFVEMAREAYRRRRDLLLEGLTALG--------------LKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEA  344 (385)
T ss_dssp             CHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHT--------------CCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHT
T ss_pred             CCCc--chHHHHHHHHHHHHHHHHHHHHHHHCC--------------CeecCCCeeEEEEEecCCCCCCHHHHHHHHHHC
Confidence            2000  235688889999999999999998763              444578889999999863  2333344444488


Q ss_pred             CeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          218 KIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       218 gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ||.++||..|+. ++++|||++.+++++++++++|.+++++
T Consensus       345 gv~v~~g~~f~~-~~~iRis~~~~~~~i~~~l~~l~~~l~~  384 (385)
T 1b5p_A          345 GVAVVPGTDFAA-FGHVRLSYATSEENLRKALERFARVLGR  384 (385)
T ss_dssp             TEECEESGGGTC-TTEEEEECCSCHHHHHHHHHHGGGGC--
T ss_pred             CeEEecccccCC-CCeEEEEecCCHHHHHHHHHHHHHHHhh
Confidence            999999999976 5899999988899999999999988764

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=100.00  E-value=2.2e-34  Score=252.21  Aligned_cols=244  Identities=16%  Similarity=0.145  Sum_probs=193.7

Q ss_pred             CCCcccchhhhhhccCcccc-----cccChhhhcccCC------------CCceEEEE-cCCCCCChhhHH--------H
Q 024997            1 MPFYPLYQEQTDYFESVDYK-----FEGEANLWGNASS------------DTHLVEFV-TAPNNPDGQMNK--------A   54 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~-----~~~d~~~l~~~~~------------~~~~~i~i-~~p~NPtG~~~~--------~   54 (259)
                      +|+|+.|...++..|.++..     .++|+++|++.++            ++++++++ ++||||||.+++        +
T Consensus       139 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~  218 (425)
T 2r2n_A          139 EPAYSGTLQSLHPLGCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYE  218 (425)
T ss_dssp             SSCCHHHHHHHGGGTCEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHcCCEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHH
Confidence            59999999999988887633     3467888888775            35777655 689999999982        7


Q ss_pred             hhcCCCcEEEeeccc----cCC-CCCCCC--CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCC
Q 024997           55 VLKGPYAKSIYDHAY----FWP-HFAPIP--APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVS  127 (259)
Q Consensus        55 la~~~~~~vi~De~y----~~~-~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~  127 (259)
                      +|+++|++||+||+|    |.. ...++.  +..+++++++||||.++ +|+|+||++++ +++++.+.......+.+++
T Consensus       219 ~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~-~~l~~~l~~~~~~~~~~~~  296 (425)
T 2r2n_A          219 LARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGP-KPLIERVILHIQVSTLHPS  296 (425)
T ss_dssp             HHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEE-HHHHHHHHHHHHTTTCSSC
T ss_pred             HHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecC-HHHHHHHHHHHHHhcCCCC
Confidence            899999999999999    322 222222  33568999999999998 99999999999 6999999988777778899


Q ss_pred             HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhc-CCCccccccccccccceeeCCCCCeeEEEecCCC-
Q 024997          128 RECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLS-NRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-  205 (259)
Q Consensus       128 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  205 (259)
                      ++.|.++.++++...++...+++.+.++.++++++.+.+.|++. +++            ..+..|.+|+|+|++++.. 
T Consensus       297 ~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~------------~~~~~p~~g~~~~~~~~~~~  364 (425)
T 2r2n_A          297 TFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGL------------AEWHVPAAGMFLWIKVKGIN  364 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS------------EEECCCSBSSEEEEEETTCS
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------------eEEeCCCceEEEEEEeCCCC
Confidence            99999999999853211234678888999999999999999863 321            1234678999999999763 


Q ss_pred             c-hHHHHHHHHHcCeeeecCCcccCC----CCeEEEEee-cChhhHHHHHHHHHHHhhh
Q 024997          206 E-DKDCYGILKAAKIIGREGKKFRAE----ARFVRLSLL-KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       206 ~-~~~~~~ll~~~gi~~~~g~~f~~~----~~~~Ris~~-~~~~~~~~~~~~l~~~l~~  258 (259)
                      + .+++.+.+.++||.++||..|+.+    .+++|||++ .+++++++++++|++++++
T Consensus       365 ~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~  423 (425)
T 2r2n_A          365 DVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKE  423 (425)
T ss_dssp             CCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            2 344567777899999999999742    579999998 5999999999999998864

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-34  Score=254.14  Aligned_cols=237  Identities=13%  Similarity=0.173  Sum_probs=194.5

Q ss_pred             CCCcccchhhhhhccCccc------------------ccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HH
Q 024997            1 MPFYPLYQEQTDYFESVDY------------------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KA   54 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------------------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~   54 (259)
                      +|+|+.|...++..|.++.                  .|.+|+++|++.++++++++++++||||||.++        .+
T Consensus       149 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~  228 (447)
T 3b46_A          149 EPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGN  228 (447)
T ss_dssp             ESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             CCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEEEeCCCCCCCcccCHHHHHHHHH
Confidence            4899999999998887641                  357899999999988899999999999999986        28


Q ss_pred             hhcCCCcEEEeeccc--c--CCCCCCCC----CCCCCeEEEeccccccCCCcceEEEEEe-cCHHHHHHHHHhhhhhcCC
Q 024997           55 VLKGPYAKSIYDHAY--F--WPHFAPIP----APADEELMIFTISKLTGHAGSRFGWAVI-KDEAVYQRMSAYISLNTMG  125 (259)
Q Consensus        55 la~~~~~~vi~De~y--~--~~~~~~~~----~~~~~~i~~~S~SK~~g~~G~R~G~i~~-~~~~~~~~~~~~~~~~~~~  125 (259)
                      +|+++|+++|+||+|  +  .....++.    +..+++++++|+||.+|++|+|+||+++ + +++++.+.......+.+
T Consensus       229 l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~-~~l~~~l~~~~~~~~~~  307 (447)
T 3b46_A          229 ICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLN-AELLSYAAKAHTRICFA  307 (447)
T ss_dssp             HHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSC-HHHHHHHHHHHHHHTSS
T ss_pred             HHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCC-HHHHHHHHHHHhhccCC
Confidence            899999999999999  2  22222221    1346899999999999999999999999 7 79999998877667788


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC
Q 024997          126 VSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE  205 (259)
Q Consensus       126 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (259)
                      ++++.|.++.++|+..   ..+.++++.++.++++++.+.+.|++++              +.+..+++|+|+|++++..
T Consensus       308 ~~~~~~~a~~~aL~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~g~~~~~~~~~~  370 (447)
T 3b46_A          308 SPSPLQEACANSINDA---LKIGYFEKMRQEYINKFKIFTSIFDELG--------------LPYTAPEGTYFVLVDFSKV  370 (447)
T ss_dssp             CCHHHHHHHHHHHHHH---HHHTHHHHHHHHHHHHHHHHHHHHHHHT--------------CCEECCSBSSEEEEECTTC
T ss_pred             CChHHHHHHHHHHhCC---cchHHHHHHHHHHHHHHHHHHHHHHHCC--------------CeecCCCeeEEEEEecccc
Confidence            9999999999898852   1256788899999999999999998764              4455788899999998742


Q ss_pred             ----------------c-hHHHHHHHHHcCeeeecCCcccCC------CCeEEEEeecChhhHHHHHHHHHHH
Q 024997          206 ----------------E-DKDCYGILKAAKIIGREGKKFRAE------ARFVRLSLLKSQDDFDLLLHRLDEL  255 (259)
Q Consensus       206 ----------------~-~~~~~~ll~~~gi~~~~g~~f~~~------~~~~Ris~~~~~~~~~~~~~~l~~~  255 (259)
                                      + .++...+++++||.+.||..|+.+      ++++|||++.+++++++++++|+++
T Consensus       371 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~~~e~l~~~~~~l~~~  443 (447)
T 3b46_A          371 KIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAVERLKLL  443 (447)
T ss_dssp             CCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHHHHHHHHHHGGGG
T ss_pred             cCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence                            2 255556777789999999988742      6899999988999999999999874

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=100.00  E-value=9.3e-34  Score=248.46  Aligned_cols=239  Identities=15%  Similarity=0.180  Sum_probs=195.8

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        .|.+|+++|++.++++++++++++||||||.+++        ++|+++|+++|
T Consensus       149 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i  228 (427)
T 3dyd_A          149 RPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPIL  228 (427)
T ss_dssp             ESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence            4899999999999888652        3567999999999888999999999999999972        88999999999


Q ss_pred             eeccc--c--CC-CCCCCC--CCCCCeEEEeccccccCCCcceEEEEEecC------HHHHHHHHHhhhhhcCCCCHHHH
Q 024997           65 YDHAY--F--WP-HFAPIP--APADEELMIFTISKLTGHAGSRFGWAVIKD------EAVYQRMSAYISLNTMGVSRECQ  131 (259)
Q Consensus        65 ~De~y--~--~~-~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~------~~~~~~~~~~~~~~~~~~~~~~q  131 (259)
                      +||+|  |  .. ...++.  .....+++++|+||.|+++|+|+||+++++      +++++.+...... ..+++++.|
T Consensus       229 ~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~  307 (427)
T 3dyd_A          229 ADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQR-ILGPCTIVQ  307 (427)
T ss_dssp             EECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH-HCCSCHHHH
T ss_pred             EEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhc-cCCCCHHHH
Confidence            99999  3  12 122222  234568999999999999999999999985      3688877766543 578899999


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-------
Q 024997          132 LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-------  204 (259)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  204 (259)
                      .++.++++..    ...++.+.+++++++++.+.+.|+++++             +....|++|+|+|++++.       
T Consensus       308 ~a~~~~L~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~~g-------------~~~~~p~~g~~~~~~l~~~~~~~~~  370 (427)
T 3dyd_A          308 GALKSILCRT----PGEFYHNTLSFLKSNADLCYGALAAIPG-------------LRPVRPSGAMYLMVGIEMEHFPEFE  370 (427)
T ss_dssp             HHHHHHHHHS----CHHHHHHHHHHHHHHHHHHHHHHHHSTT-------------EEEECCSBTTEEEEEECGGGCTTCS
T ss_pred             HHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------ceecCCCeeEEEEEecCHhhcCCCC
Confidence            9999999842    4567888899999999999999987643             556678999999998862       


Q ss_pred             CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          205 EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       205 ~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      .+.+++..+++++||.++||..|+. ++++||+++.+++++++++++|.+++++
T Consensus       371 ~~~~~~~~l~~~~gV~v~~g~~~~~-~~~iRis~~~~~e~i~~~l~~l~~~l~~  423 (427)
T 3dyd_A          371 NDVEFTERLVAEQSVHCLPATCFEY-PNFIRVVITVPEVMMLEACSRIQEFCEQ  423 (427)
T ss_dssp             SHHHHHHHHHHHHCEECEEGGGGTC-TTEEEEESCSCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCEEEECCcccCC-CCeEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            1346677777789999999998875 4899999988999999999999998764

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=100.00  E-value=3.3e-34  Score=248.44  Aligned_cols=235  Identities=16%  Similarity=0.159  Sum_probs=194.1

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHhhcCCCcEEEe
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVLKGPYAKSIY   65 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~vi~   65 (259)
                      +|+|+.|...++..|.++.       +|.+|+++|++.++++++++++++||||||.++        .++|+++|+++|+
T Consensus       127 ~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~  206 (396)
T 3jtx_A          127 NPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIAS  206 (396)
T ss_dssp             ESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEE
T ss_pred             CCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence            4899999999988887652       456788889988877899999999999999997        2788999999999


Q ss_pred             eccc--c--CC-CCCCC-------CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHH
Q 024997           66 DHAY--F--WP-HFAPI-------PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLR  133 (259)
Q Consensus        66 De~y--~--~~-~~~~~-------~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~  133 (259)
                      ||+|  |  .. .....       ....+++++++|+||.++++|+|+||++++ +++++.+.......+.+++++.|.+
T Consensus       207 De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a  285 (396)
T 3jtx_A          207 DECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGD-AELLKNFLLYRTYHGSAMSIPVQRA  285 (396)
T ss_dssp             ECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEEC-HHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             EccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeC-HHHHHHHHHHHhhcccCCCHHHHHH
Confidence            9999  2  11 11111       113678999999999999999999999998 7999999988877778899999999


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCc-hHHHHH
Q 024997          134 AFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREE-DKDCYG  212 (259)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  212 (259)
                      +..+++      .++++.+.+++++++++.+.+.|+++.               ....+.+|+|+|++++..+ .++...
T Consensus       286 ~~~~l~------~~~~~~~~~~~~~~~~~~l~~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (396)
T 3jtx_A          286 SIAAWD------DEQHVIDNRRLYQEKFERVIPILQQVF---------------DVKLPDASFYIWLKVPDGDDLAFARN  344 (396)
T ss_dssp             HHHHHH------CCHHHHHHHHHHHHHHHHHHHHHTTTS---------------CCCCCSSSSEEEEECTTSCHHHHHHH
T ss_pred             HHHHhC------CHHHHHHHHHHHHHHHHHHHHHHHhcC---------------CccCCCeeEEEEEECCCCCHHHHHHH
Confidence            999998      356888899999999999999987531               2346788999999998643 566666


Q ss_pred             HHHHcCeeeecCCcccC-------CCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          213 ILKAAKIIGREGKKFRA-------EARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       213 ll~~~gi~~~~g~~f~~-------~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      +++++||.+.||..|+.       +.+++|||++.+++++++++++|+++++
T Consensus       345 l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~  396 (396)
T 3jtx_A          345 LWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLYR  396 (396)
T ss_dssp             HHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcCCHHHHHHHHHHHHHHhC
Confidence            76788999999999874       3689999998899999999999998763

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=100.00  E-value=5.2e-34  Score=249.24  Aligned_cols=243  Identities=12%  Similarity=0.174  Sum_probs=199.3

Q ss_pred             CCCcccchhhhhhccCccc------------------ccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HH
Q 024997            1 MPFYPLYQEQTDYFESVDY------------------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KA   54 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------------------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~   54 (259)
                      +|+|+.|...++..|.++.                  +|.+|+++|++.++++++++++++||||||.++        .+
T Consensus       122 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~  201 (422)
T 3fvs_A          122 EPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVAS  201 (422)
T ss_dssp             ESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             CCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHHH
Confidence            4899999999988887542                  235788999999988999999999999999997        27


Q ss_pred             hhcCCCcEEEeeccc--c--CC-CCCC---CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCC
Q 024997           55 VLKGPYAKSIYDHAY--F--WP-HFAP---IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGV  126 (259)
Q Consensus        55 la~~~~~~vi~De~y--~--~~-~~~~---~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~  126 (259)
                      +|+++|+++|+||+|  |  .. ...+   +....+++++++|+||.+|++|+|+||++++ +++++.+........+++
T Consensus       202 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~  280 (422)
T 3fvs_A          202 LCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGP-DHIMKHLRTVHQNSVFHC  280 (422)
T ss_dssp             HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECC-HHHHHHHHHHHHTTTCCC
T ss_pred             HHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeC-HHHHHHHHHHHhhccCCC
Confidence            899999999999999  2  22 1222   2233478999999999999999999999999 699999988877677889


Q ss_pred             CHHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC
Q 024997          127 SRECQLRAFKLLKVVLE--DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER  204 (259)
Q Consensus       127 ~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (259)
                      +++.|.++..+++....  +..+.++++.++.++++++.+.+.|++++              +....+.+++|+|++++.
T Consensus       281 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~~~~~~~~~~  346 (422)
T 3fvs_A          281 PTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVG--------------LKPIIPQGSYFLITDISD  346 (422)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTT--------------CEEEBCSBSSEEEEECHH
T ss_pred             CcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcC--------------CeecCCCeeeEEEEechh
Confidence            99999999999873100  12456888999999999999999998763              555688999999998864


Q ss_pred             C---------------chHHHHHHHHHcCeeeecCCcccC------CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          205 E---------------EDKDCYGILKAAKIIGREGKKFRA------EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       205 ~---------------~~~~~~~ll~~~gi~~~~g~~f~~------~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      .               +.++...+++++||.+.||+.|+.      +.+++|||++.+++++++++++|++++++
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~  421 (422)
T 3fvs_A          347 FKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWKVE  421 (422)
T ss_dssp             HHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_pred             hcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHhh
Confidence            2               226677778889999999999863      46899999988999999999999998864

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=100.00  E-value=7.3e-34  Score=247.40  Aligned_cols=238  Identities=23%  Similarity=0.299  Sum_probs=194.7

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHhhcCCCcEEEe
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVLKGPYAKSIY   65 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~vi~   65 (259)
                      +|+|+.|...++..|.++.       +|.+|+++|++.++++++++++++||||||.++        .++|+++|+++|+
T Consensus       140 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~  219 (404)
T 2o1b_A          140 DPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVH  219 (404)
T ss_dssp             ESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEE
T ss_pred             CCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence            4899999999988887652       345788888888877789999999999999987        2789999999999


Q ss_pred             eccc--c--CCCCCCCCC---CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 024997           66 DHAY--F--WPHFAPIPA---PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLL  138 (259)
Q Consensus        66 De~y--~--~~~~~~~~~---~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l  138 (259)
                      ||+|  |  .....++..   ..+++++++|+||.+|++|+|+||++++ +++++.+.......+.+++++.|.++.+++
T Consensus       220 De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l  298 (404)
T 2o1b_A          220 DFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGN-KDMIQALKKYQTHTNAGMFGALQDAAIYAL  298 (404)
T ss_dssp             ECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEEC-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred             EccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecC-HHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence            9999  2  111112212   2357899999999999999999999998 799999988877777889999999999999


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-c-hHHHHHHHHH
Q 024997          139 KVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-E-DKDCYGILKA  216 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ll~~  216 (259)
                      +.     .+.++++.++.++++++.+.+.|++++              +....+++++|+|++++.. + .++...++++
T Consensus       299 ~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~  359 (404)
T 2o1b_A          299 NH-----YDDFLEEQSNVFKTRRDRFEAMLAKAD--------------LPFVHAKGGIYVWLETPPGYDSEQFEQFLVQE  359 (404)
T ss_dssp             HH-----CHHHHHHHHHHHHHHHHHHHHHHHHTT--------------CCEECCCBSSEEEEECCTTCCHHHHHHHHHHH
T ss_pred             hc-----CHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CeecCCCcceEEEEeCCCCCCHHHHHHHHHHH
Confidence            84     356788899999999999999998763              4445778899999998742 3 3556666767


Q ss_pred             cCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          217 AKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       217 ~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +||.++||..|+. +++++|||++.+++++++++++|++++++
T Consensus       360 ~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~~~l~~  402 (404)
T 2o1b_A          360 KSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAYL  402 (404)
T ss_dssp             HCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGGGG
T ss_pred             CCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence            8999999999875 46899999988889999999999998865

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=100.00  E-value=7.8e-34  Score=247.65  Aligned_cols=238  Identities=20%  Similarity=0.187  Sum_probs=193.0

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        +|.+|++.|++.++++++++++++||||||.++        .++|+++|+++|
T Consensus       130 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li  209 (412)
T 2x5d_A          130 NPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVV  209 (412)
T ss_dssp             ESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             CCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence            4899999999988887652        344677888888877889999999999999986        278999999999


Q ss_pred             eeccc--c---CCCCCCCCC---CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 024997           65 YDHAY--F---WPHFAPIPA---PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFK  136 (259)
Q Consensus        65 ~De~y--~---~~~~~~~~~---~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~  136 (259)
                      +||+|  +   +....++..   ..+++++++|+||.+|++|+|+||++++ +++++.+.......+.+++++.|.++..
T Consensus       210 ~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~  288 (412)
T 2x5d_A          210 HDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGN-PELVSALARIKSYHDYGTFTPLQVAAIA  288 (412)
T ss_dssp             EECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEEC-HHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_pred             EeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcC-HHHHHHHHHHHhhhccCCCHHHHHHHHH
Confidence            99999  2   111222221   2467999999999999999999999998 7999999887777778899999999999


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-C---c-hHHHH
Q 024997          137 LLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-E---E-DKDCY  211 (259)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~-~~~~~  211 (259)
                      +++.     .++++++.++.++++++.+.+.|++++              +....+++|+|+|++++. .   + .++..
T Consensus       289 ~l~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  349 (412)
T 2x5d_A          289 ALEG-----DQQCVRDIARQYQQRRDVLVKGLREAG--------------WMVENPKASMYVWAKIPEPYAHLGSLEFAK  349 (412)
T ss_dssp             HHHS-----CSHHHHHHHHHHHHHHHHHHHHHHHHT--------------CCCCCCSBSSEEEEECCTTTGGGCHHHHHH
T ss_pred             HHhC-----CHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CEecCCCeeeEEEEEcCCccCCCCHHHHHH
Confidence            9883     456788899999999999999998763              344567789999999863 2   2 34555


Q ss_pred             HHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          212 GILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       212 ~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      .+++++||.++||..|+. +++++|||++.+++++++++++|.+++++
T Consensus       350 ~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~  397 (412)
T 2x5d_A          350 KLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAMFRA  397 (412)
T ss_dssp             HHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            666678999999999874 46899999988999999999999998763

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.1e-34  Score=256.04  Aligned_cols=243  Identities=16%  Similarity=0.203  Sum_probs=189.7

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCC-----CceEEEEcCCCCCChhhHH--------HhhcCC
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSD-----THLVEFVTAPNNPDGQMNK--------AVLKGP   59 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~-----~~~~i~i~~p~NPtG~~~~--------~la~~~   59 (259)
                      +|+|+.|...++..|.++.        +|.+|+++|++.+++     ++++|+++|||||||.+++        ++|+++
T Consensus       188 ~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~  267 (498)
T 3ihj_A          188 IPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEE  267 (498)
T ss_dssp             ESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHc
Confidence            4899999999999888652        478899999988854     5899999999999999972        789999


Q ss_pred             CcEEEeeccc----cCC--CCCCCCC----------CCCCeEEEecccccc-CCCcceEEEEE---ecCHHHHHHHHHhh
Q 024997           60 YAKSIYDHAY----FWP--HFAPIPA----------PADEELMIFTISKLT-GHAGSRFGWAV---IKDEAVYQRMSAYI  119 (259)
Q Consensus        60 ~~~vi~De~y----~~~--~~~~~~~----------~~~~~i~~~S~SK~~-g~~G~R~G~i~---~~~~~~~~~~~~~~  119 (259)
                      |++||+||+|    |..  ...++..          ...++++++||||.| |++|+|+||++   .+ +++++.+....
T Consensus       268 ~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~-~~l~~~l~~~~  346 (498)
T 3ihj_A          268 KLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLH-PEIKGQLVKLL  346 (498)
T ss_dssp             TCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCC-HHHHHHHHHHH
T ss_pred             CcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCC-HHHHHHHHHHH
Confidence            9999999999    221  2222221          123478999999999 88999999998   46 79999988776


Q ss_pred             hhhcCCCCHHHHHHHHHHHHHHHhc--CCcc---hHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCC
Q 024997          120 SLNTMGVSRECQLRAFKLLKVVLED--GGNN---IFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPS  194 (259)
Q Consensus       120 ~~~~~~~~~~~q~~~~~~l~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (259)
                      . ...+++.+.|.++..+++....+  ..+.   +..+.+++++++++.+.+.|+++++             +.+..+++
T Consensus       347 ~-~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g-------------~~~~~p~g  412 (498)
T 3ihj_A          347 S-VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPG-------------IHCNPLQG  412 (498)
T ss_dssp             H-HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT-------------EECCCCCB
T ss_pred             h-ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------cEecCCCe
Confidence            5 56788999999888887521000  0112   2456678899999999999987643             56678999


Q ss_pred             CeeEEEecCC------------Cc-hHH-HHHHHHHcCeeeecCCcccC--CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          195 PAYAWVKCER------------EE-DKD-CYGILKAAKIIGREGKKFRA--EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       195 ~~~~~~~~~~------------~~-~~~-~~~ll~~~gi~~~~g~~f~~--~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ++|+|+++..            .+ .++ +.++|+++||.++||+.|+.  +++++|++++.+++++++++++|.+++++
T Consensus       413 g~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~~~e~l~~~i~~L~~~~~~  492 (498)
T 3ihj_A          413 AMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHIN  492 (498)
T ss_dssp             SSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            9999987642            12 222 67888889999999999984  46799999987999999999999988763

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=100.00  E-value=1.6e-33  Score=248.42  Aligned_cols=239  Identities=16%  Similarity=0.146  Sum_probs=191.1

Q ss_pred             CCCcccchhhhhhccCccccc-----ccChhhhcccCC----C--CceEE-EEcCCCCCChhhHH--------HhhcCCC
Q 024997            1 MPFYPLYQEQTDYFESVDYKF-----EGEANLWGNASS----D--THLVE-FVTAPNNPDGQMNK--------AVLKGPY   60 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~-----~~d~~~l~~~~~----~--~~~~i-~i~~p~NPtG~~~~--------~la~~~~   60 (259)
                      +|+|+.|...++..|.++..+     ++|+++|++.++    +  +++++ ++++||||||.+++        ++|+++|
T Consensus       171 ~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~  250 (448)
T 3aow_A          171 APTYLAALQAFNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYD  250 (448)
T ss_dssp             ESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             CCChHHHHHHHHHcCCEEEEeccCCCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcC
Confidence            489999999999888776332     468888988876    5  78886 57899999999872        7899999


Q ss_pred             cEEEeecccc----CC-CCCCCC--CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHH
Q 024997           61 AKSIYDHAYF----WP-HFAPIP--APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLR  133 (259)
Q Consensus        61 ~~vi~De~y~----~~-~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~  133 (259)
                      ++||+||+|.    .. ...++.  +..+++++++||||.++ +|+|+||++++ +++++.+.......+.+++++.|.+
T Consensus       251 ~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~~~-~~l~~~l~~~~~~~~~~~~~~~q~a  328 (448)
T 3aow_A          251 FIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMVGD-PGIIRKMEIAKQSTDLCTNVFGQVV  328 (448)
T ss_dssp             CEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEEEC-HHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             CEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEEEeC-HHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            9999999992    11 122232  33467999999999999 99999999999 7999999887776678889999999


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhc-C-CCccccccccccccceeeCCCCCeeEEEecCCC-ch-HH
Q 024997          134 AFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLS-N-RFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-ED-KD  209 (259)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~  209 (259)
                      +.++++..   ..++++.+.++.++++++.+.+.|++. + +             +.+..|.+|+|+|++++.. +. ++
T Consensus       329 ~~~~L~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g-------------~~~~~p~~g~~~~v~~~~~~~~~~l  392 (448)
T 3aow_A          329 AWRYVDGG---YLEKHIPEIRKFYKPRRDAMLEALEEFMPEG-------------VKWTKPEGGMFIWVTLPDGIDSKKM  392 (448)
T ss_dssp             HHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTT-------------CEECCCSBSSEEEEECSTTCCHHHH
T ss_pred             HHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------------eEEeCCCccEEEEEEcCCCCCHHHH
Confidence            99999831   125678888999999999999999863 3 1             4455788899999999752 33 44


Q ss_pred             HHHHHHHcCeeeecCCcccC---CCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          210 CYGILKAAKIIGREGKKFRA---EARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       210 ~~~ll~~~gi~~~~g~~f~~---~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      ...++ ++||.++||..|+.   +++++|||++. +++++++++++|.+++++
T Consensus       393 ~~~l~-~~gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~~  444 (448)
T 3aow_A          393 LERAI-KKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKE  444 (448)
T ss_dssp             HHHHH-HTTEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HCCcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            55555 56999999999964   36899999987 799999999999998764

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=100.00  E-value=1.3e-33  Score=245.69  Aligned_cols=240  Identities=14%  Similarity=0.180  Sum_probs=196.3

Q ss_pred             CCCcccchhhhhhccCccc-----------------ccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHh
Q 024997            1 MPFYPLYQEQTDYFESVDY-----------------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAV   55 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-----------------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~l   55 (259)
                      +|+|+.|...++..|.++.                 .|.+|+++|++.++++++++++++||||||.++        .++
T Consensus       116 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~  195 (410)
T 3e2y_A          116 VPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADL  195 (410)
T ss_dssp             ESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceEEEEeCCCCCCCcCcCHHHHHHHHHH
Confidence            4899999999988887542                 234788999999988999999999999999996        278


Q ss_pred             hcCCCcEEEeeccc--c--CC-CCCC---CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCC
Q 024997           56 LKGPYAKSIYDHAY--F--WP-HFAP---IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVS  127 (259)
Q Consensus        56 a~~~~~~vi~De~y--~--~~-~~~~---~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~  127 (259)
                      |+++|+++|+||+|  |  .. ...+   +....+++++++|+||.+|++|+|+||++++ +++++.+.......+++++
T Consensus       196 ~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~  274 (410)
T 3e2y_A          196 CVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGP-AHLIKHLQTVQQNSFYTCA  274 (410)
T ss_dssp             HHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECC-HHHHHHHHHHHHTTTCCCC
T ss_pred             HHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEEC-HHHHHHHHHHHHhhccCCC
Confidence            99999999999999  2  12 1222   2234578999999999999999999999999 7999999888777778899


Q ss_pred             HHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC
Q 024997          128 RECQLRAFKLLKVVLE--DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE  205 (259)
Q Consensus       128 ~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (259)
                      ++.|.++..+++....  +....++++.++.++++++.+.+.|++++              +....+++++|+|+++...
T Consensus       275 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~~~~~~~~~~~  340 (410)
T 3e2y_A          275 TPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVG--------------LKPIVPDGGYFIIADVSSL  340 (410)
T ss_dssp             HHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTT--------------CEEEBCSBSSEEEEECGGG
T ss_pred             hHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CeecCCCccEEEEEEchhh
Confidence            9999999999873100  12456788899999999999999998764              5566889999999998652


Q ss_pred             c-------------hHHHHHHHHHcCeeeecCCcccC------CCCeEEEEeecChhhHHHHHHHHHHH
Q 024997          206 E-------------DKDCYGILKAAKIIGREGKKFRA------EARFVRLSLLKSQDDFDLLLHRLDEL  255 (259)
Q Consensus       206 ~-------------~~~~~~ll~~~gi~~~~g~~f~~------~~~~~Ris~~~~~~~~~~~~~~l~~~  255 (259)
                      .             .+++..+++++||.+.||..|+.      +.+++|||++.+++++++++++|+++
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~l~~~l~~l~~~  409 (410)
T 3e2y_A          341 GADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRAW  409 (410)
T ss_dssp             CCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHHHHHHHHTC
T ss_pred             hcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHhc
Confidence            1             16677788889999999999964      35899999988999999999999864

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=100.00  E-value=2.7e-33  Score=245.13  Aligned_cols=245  Identities=15%  Similarity=0.148  Sum_probs=191.9

Q ss_pred             CCCcccchhhhhhccCccccc-----ccChhhhcccCCC-CceEEE-EcCCCCCChhhHH--------Hhhc-CCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDYKF-----EGEANLWGNASSD-THLVEF-VTAPNNPDGQMNK--------AVLK-GPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~-----~~d~~~l~~~~~~-~~~~i~-i~~p~NPtG~~~~--------~la~-~~~~~vi   64 (259)
                      +|+|+.|...++..|.++..+     ++|+++|++.+++ ++++++ +++||||||.+++        ++|+ ++|+++|
T Consensus       138 ~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li  217 (422)
T 3d6k_A          138 VPGYDRHFTITEHFGFEMINVPMTDEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIV  217 (422)
T ss_dssp             ESCCHHHHHHHHHHTCEEEEEEEETTEECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEE
T ss_pred             CCccHHHHHHHHHcCCEEEecCCCCCCCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEE
Confidence            489999999999988876433     3788889988865 788877 7899999999982        6788 8999999


Q ss_pred             eeccc----cCC---CCCCC------CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHH
Q 024997           65 YDHAY----FWP---HFAPI------PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQ  131 (259)
Q Consensus        65 ~De~y----~~~---~~~~~------~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q  131 (259)
                      +||+|    |..   ...++      .+..+++++++||||. +++|+|+||++++ +++++.+.......+.+++++.|
T Consensus       218 ~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~~-~~l~~~l~~~~~~~~~~~~~~~q  295 (422)
T 3d6k_A          218 WDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGVSFFASS-KENIEWYASHANVRGIGPNKLNQ  295 (422)
T ss_dssp             EECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSCEEEECC-HHHHHHHHHHHHHHCSCCCHHHH
T ss_pred             EECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccceEEEEeC-HHHHHHHHHHHHhhcCCCCHHHH
Confidence            99999    311   11222      1345789999999999 6799999999999 79999999888877888999999


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHH
Q 024997          132 LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCY  211 (259)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (259)
                      .++..+++..  +..+.++++.++.++++++.+.+.|++.-       ++.  ..+.+..|++|+|+|++++..+.+.+.
T Consensus       296 ~a~~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~l-------~~~--~~~~~~~p~~g~~~~~~~~~~~~~~~~  364 (422)
T 3d6k_A          296 LAHAQFFGDV--AGLKAHMLKHAASLAPKFERVLEILDSRL-------SEY--GVAKWTSPTGGYFISVDVVPGTASRVV  364 (422)
T ss_dssp             HHHHHHHCSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------GGG--TCEEECCCSBSSCEEEEESTTCHHHHH
T ss_pred             HHHHHHHhCc--chHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CcC--CceEEeCCCcceEEEEECCCCCHHHHH
Confidence            9999998731  01235778888899999999988887521       110  013445778999999999764456677


Q ss_pred             HHHHHcCeeeec-CCcccC----CCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          212 GILKAAKIIGRE-GKKFRA----EARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       212 ~ll~~~gi~~~~-g~~f~~----~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      ++++++||.++| |..|..    +.+++|||++. +++++++++++|++++++
T Consensus       365 ~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~  417 (422)
T 3d6k_A          365 ELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGFATCVLM  417 (422)
T ss_dssp             HHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence            788899999999 555641    35899999985 999999999999988753

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=100.00  E-value=2.4e-33  Score=245.70  Aligned_cols=244  Identities=13%  Similarity=0.143  Sum_probs=196.5

Q ss_pred             CCCcccchhhhhhccCccc----------------ccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHhh
Q 024997            1 MPFYPLYQEQTDYFESVDY----------------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVL   56 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~----------------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la   56 (259)
                      +|+|+.|...++..|.++.                .|.+|++.|++.++++++++++++||||||.++        .++|
T Consensus       132 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~  211 (429)
T 1yiz_A          132 EPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLC  211 (429)
T ss_dssp             ESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECCCCCCCCccCCHHHHHHHHHHH
Confidence            4899999998888877541                356888999999988899999999999999987        2789


Q ss_pred             cCCCcEEEeeccc--c--C-CCCCCCC---CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCH
Q 024997           57 KGPYAKSIYDHAY--F--W-PHFAPIP---APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSR  128 (259)
Q Consensus        57 ~~~~~~vi~De~y--~--~-~~~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~  128 (259)
                      +++|+++|+||+|  |  . ....++.   ...+++++++|+||.+|++|+|+||++++ +++++.+.......++++++
T Consensus       212 ~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~  290 (429)
T 1yiz_A          212 KKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGP-EALLKNLQMVHQNCVYTCAT  290 (429)
T ss_dssp             HHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESC-HHHHHHHHHHHHTTTCCCCH
T ss_pred             HHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEEeC-HHHHHHHHHHHhhcccCCCh
Confidence            9999999999999  2  1 1122221   24567999999999999999999999999 79999998877666788999


Q ss_pred             HHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-
Q 024997          129 ECQLRAFKLLKVVLE--DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-  205 (259)
Q Consensus       129 ~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  205 (259)
                      +.|.++.++++....  +..++++++.++.++++++.+.+.|++++              +....+.+|+|+|++++.. 
T Consensus       291 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~g~~~~~~~~~~~  356 (429)
T 1yiz_A          291 PIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVG--------------MNPTVPQGGYFMVADWSSLD  356 (429)
T ss_dssp             HHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHT--------------CEEEECSBSSEEEEECCSSC
T ss_pred             HHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CcccCCCcceEEEEEccccc
Confidence            999999999884100  12267888899999999999999998763              4455677899999998753 


Q ss_pred             ------------c-hHHHHHHHHHcCeeeecCCcccC------CCCeEEEEeecChhhHHHHHHHHHHHhhhC
Q 024997          206 ------------E-DKDCYGILKAAKIIGREGKKFRA------EARFVRLSLLKSQDDFDLLLHRLDELISKE  259 (259)
Q Consensus       206 ------------~-~~~~~~ll~~~gi~~~~g~~f~~------~~~~~Ris~~~~~~~~~~~~~~l~~~l~~~  259 (259)
                                  + .++...+++++||.++||..|+.      +.+++|||++.+++++++++++|+++++++
T Consensus       357 ~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~~  429 (429)
T 1yiz_A          357 SKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKGSS  429 (429)
T ss_dssp             TTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHHHHHHHHHHHHSCCC
T ss_pred             ccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCHHHHHHHHHHHHHhccCC
Confidence                        2 24455566689999999998863      268999999889999999999999988753

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=100.00  E-value=2.4e-33  Score=242.50  Aligned_cols=238  Identities=17%  Similarity=0.207  Sum_probs=193.1

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        +|.+|+++|++.++++++++++++||||||.++        .++|+++|+++|
T Consensus       118 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li  197 (389)
T 1gd9_A          118 TPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVI  197 (389)
T ss_dssp             ESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence            4899999999988887652        356788999999988889999999999999986        288999999999


Q ss_pred             eeccc--c--CCC-CCCCC---CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 024997           65 YDHAY--F--WPH-FAPIP---APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFK  136 (259)
Q Consensus        65 ~De~y--~--~~~-~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~  136 (259)
                      +||+|  +  ... ..++.   +..+++++++|+||.+|++|+|+||++++ +++++.+.......+.+++++.|.++..
T Consensus       198 ~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~  276 (389)
T 1gd9_A          198 SDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAP-SWIIERMVKFQMYNATCPVTFIQYAAAK  276 (389)
T ss_dssp             EECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECC-HHHHHHHHHHHTTTTCSCCHHHHHHHHH
T ss_pred             EehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEEC-HHHHHHHHHHHhhhccCCCHHHHHHHHH
Confidence            99999  2  111 22222   22467999999999999999999999999 7999999887776678899999999988


Q ss_pred             HHHHHHhcCCcc--hHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC--Cch-HHHH
Q 024997          137 LLKVVLEDGGNN--IFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--EED-KDCY  211 (259)
Q Consensus       137 ~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~  211 (259)
                      +++.     ...  ++++.+++++++++.+.+.|++++              +....+++++++|++++.  .+. ++..
T Consensus       277 ~l~~-----~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (389)
T 1gd9_A          277 ALKD-----ERSWKAVEEMRKEYDRRRKLVWKRLNEMG--------------LPTVKPKGAFYIFPRIRDTGLTSKKFSE  337 (389)
T ss_dssp             HHTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------------CCCCCCCBTTEECCBCGGGTCCHHHHHH
T ss_pred             HHhC-----CCcchHHHHHHHHHHHHHHHHHHHHHHcC--------------CeecCCCeeeEEEEeccCCCCCHHHHHH
Confidence            8873     233  678889999999999999998763              334467788999998863  233 4455


Q ss_pred             HHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          212 GILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       212 ~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      .+++++||.++||..|+. +++++|||++.+++++++++++|.+++++
T Consensus       338 ~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~~~~  385 (389)
T 1gd9_A          338 LMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKE  385 (389)
T ss_dssp             HHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            555589999999998874 46899999988999999999999998864

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=100.00  E-value=2.7e-33  Score=242.02  Aligned_cols=234  Identities=15%  Similarity=0.177  Sum_probs=191.6

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHhhcCCCcEEEe
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVLKGPYAKSIY   65 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~vi~   65 (259)
                      +|+|+.|...++..|.++.       .|.+|+++|++.++++++++++++||||||.++        .++|+++|+++|+
T Consensus       122 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~  201 (386)
T 1u08_A          122 DPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVIS  201 (386)
T ss_dssp             ESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEE
T ss_pred             CCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence            4899999999988887652       356889999999988899999999999999987        2789999999999


Q ss_pred             eccc--c--CC-CCCCCCC---CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Q 024997           66 DHAY--F--WP-HFAPIPA---PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKL  137 (259)
Q Consensus        66 De~y--~--~~-~~~~~~~---~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  137 (259)
                      ||+|  |  .. ...++..   ..+++++++|+||.+|++|+|+||++++ +++++.+........++++++.|.++..+
T Consensus       202 De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~  280 (386)
T 1u08_A          202 DEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAP-APISAEIRKVHQYLTFSVNTPAQLALADM  280 (386)
T ss_dssp             ECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECC-HHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred             EccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcC-HHHHHHHHHHHHhhccCCChHHHHHHHHH
Confidence            9999  2  11 1222221   3468999999999999999999999999 79999998877766788899999999999


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---c-hHHHHHH
Q 024997          138 LKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---E-DKDCYGI  213 (259)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~l  213 (259)
                      ++.     .+.++++.+++++++++.+.+.|++++              +....+++|+++|++++..   + .++...+
T Consensus       281 l~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l  341 (386)
T 1u08_A          281 LRA-----EPEHYLALPDFYRQKRDILVNALNESR--------------LEILPCEGTYFLLVDYSAVSTLDDVEFCQWL  341 (386)
T ss_dssp             HHH-----CTHHHHTHHHHHHHHHHHHHHHTTSSS--------------CEECCCCBSSEEEEECTTTCCSCHHHHHHHH
T ss_pred             HhC-----CcHHHHHHHHHHHHHHHHHHHHHHHCC--------------CeecCCCceEEEEEecCCCCCCCHHHHHHHH
Confidence            884     356788889999999999999988653              4455677889999999752   3 3455556


Q ss_pred             HHHcCeeeecCCcccC---CCCeEEEEeecChhhHHHHHHHHHH
Q 024997          214 LKAAKIIGREGKKFRA---EARFVRLSLLKSQDDFDLLLHRLDE  254 (259)
Q Consensus       214 l~~~gi~~~~g~~f~~---~~~~~Ris~~~~~~~~~~~~~~l~~  254 (259)
                      ++++||.++||..|+.   +++++|||++.+++++++++++|++
T Consensus       342 ~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~  385 (386)
T 1u08_A          342 TQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ  385 (386)
T ss_dssp             HHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred             HHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence            6678999999998863   4689999998899999999999865

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=100.00  E-value=2.1e-33  Score=243.19  Aligned_cols=235  Identities=19%  Similarity=0.231  Sum_probs=193.0

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        +|.+|+++|++.   +++++++++||||||.+++        ++|+++|+++|
T Consensus       122 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li  198 (391)
T 3h14_A          122 APGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFI  198 (391)
T ss_dssp             ESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc---CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence            4899999999998888752        355688888776   7888899999999999872        78999999999


Q ss_pred             eeccc--c--CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q 024997           65 YDHAY--F--WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKV  140 (259)
Q Consensus        65 ~De~y--~--~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  140 (259)
                      +||+|  |  ...........+++++++|+||.+|++|+|+||++++ +++++.+.......+.+++++.|.++.++++ 
T Consensus       199 ~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~-  276 (391)
T 3h14_A          199 SDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVP-EDQVRVVERIAQNMFICAPHASQVAALAALD-  276 (391)
T ss_dssp             EECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECC-GGGHHHHHHHHHHTTCCCCHHHHHHHHHHTT-
T ss_pred             EECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHhC-
Confidence            99999  2  2222222234578999999999999999999999999 5999999888887788899999998888886 


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--c-hHHHHHHHHHc
Q 024997          141 VLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--E-DKDCYGILKAA  217 (259)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~ll~~~  217 (259)
                           ..+++.+.+++++++++.+.+.|++++.             .....+.+++++|++++..  + .++...+++++
T Consensus       277 -----~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  338 (391)
T 3h14_A          277 -----CDAELQANLDVYKANRKLMLERLPKAGF-------------TRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKA  338 (391)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------CCBCCCCBTTEEEEECTTTCSCHHHHHHHHHHHH
T ss_pred             -----ChHHHHHHHHHHHHHHHHHHHHHHHcCC-------------CcccCCCeeEEEEEecCccCCCHHHHHHHHHHHC
Confidence                 3467888999999999999999987652             2224677889999998742  3 45566667767


Q ss_pred             CeeeecCCcccC--CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          218 KIIGREGKKFRA--EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       218 gi~~~~g~~f~~--~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ||.++||..|+.  +++++|||++.+++++++++++|++++++
T Consensus       339 gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~~~~  381 (391)
T 3h14_A          339 GVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQA  381 (391)
T ss_dssp             CEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            999999999986  36899999988899999999999999875

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=100.00  E-value=2.3e-33  Score=241.53  Aligned_cols=238  Identities=18%  Similarity=0.236  Sum_probs=196.7

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.+...++..|.++.        +|.+|+++|++.+++++++|++++||||||.+++        ++|+++|+++|
T Consensus       112 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li  191 (375)
T 3op7_A          112 YPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYIL  191 (375)
T ss_dssp             ESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEE
T ss_pred             CCCchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            4889999998888887652        3557999999999889999999999999999972        78999999999


Q ss_pred             eeccc--cCC-CCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Q 024997           65 YDHAY--FWP-HFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVV  141 (259)
Q Consensus        65 ~De~y--~~~-~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~  141 (259)
                      +||+|  +.. ....+.+..+++++++||||.+|++|+|+||++++ +++++.+.......+.+++++.|.++..+++. 
T Consensus       192 ~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-  269 (375)
T 3op7_A          192 SDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAAN-HQVTDILRDYRDYTMICAGVFDDLVAQLALAH-  269 (375)
T ss_dssp             EECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECC-HHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHT-
T ss_pred             EEcccccccccCCCchhhhcCCEEEEeEChhhcCCcccceEEEEeC-HHHHHHHHHHHhhhccCCCcHHHHHHHHHHhc-
Confidence            99999  211 11111134577899999999999999999999998 79999999888777788899999999888873 


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHcCe
Q 024997          142 LEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAKI  219 (259)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi  219 (259)
                          .+.++++.++.++++++.+.+.|++.++             +....+.++++.|+.++..  ..+++..+++++||
T Consensus       270 ----~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi  332 (375)
T 3op7_A          270 ----YQEILERNRHILEENLAILDQWIEEEPL-------------VSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGV  332 (375)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHCTT-------------EEECCCSSSSCEEEEECCSSCHHHHHHHHHHHHCE
T ss_pred             ----cHHHHHHHHHHHHHHHHHHHHHHhhCCC-------------ceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhCCE
Confidence                4557788888899999999999987553             4556788888888887643  34666777788999


Q ss_pred             eeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          220 IGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       220 ~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      .++||..|+. ++++|++++.+.+++++++++|.+++++
T Consensus       333 ~v~~g~~~~~-~~~iRi~~~~~~~~i~~~l~~l~~~l~~  370 (375)
T 3op7_A          333 LLVPGNRFER-DGYVRLGFACEQETLIKGLEKLSQFLRR  370 (375)
T ss_dssp             ECEEGGGGTC-TTEEEECCCSCHHHHHHHHHHHHHHHGG
T ss_pred             EEeChhhhCC-CCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            9999998886 5899999988779999999999998764

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=100.00  E-value=1.9e-33  Score=241.72  Aligned_cols=239  Identities=17%  Similarity=0.223  Sum_probs=194.8

Q ss_pred             CCCcccchhhhhhccCcccccccChhhhcccCCCCceEEEEcCCCCCChhhH----HHhhcCCCcEEEeeccc--c--CC
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN----KAVLKGPYAKSIYDHAY--F--WP   72 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~----~~la~~~~~~vi~De~y--~--~~   72 (259)
                      +|+|+.|...++..|.++..+.+|+++|++.++++++++++++||||||.++    .++|+++|+++|+||+|  +  ..
T Consensus       120 ~p~~~~~~~~~~~~g~~~~~v~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~l~~~~~~~~~~li~De~~~~~~~~g  199 (370)
T 2z61_A          120 NPCYPCYKNFIRFLGAKPVFCDFTVESLEEALSDKTKAIIINSPSNPLGEVIDREIYEFAYENIPYIISDEIYNGLVYEG  199 (370)
T ss_dssp             SSCCTHHHHHHHHTTCEEEEECSSHHHHHHHCCSSEEEEEEESSCTTTCCCCCHHHHHHHHHHCSEEEEECTTTTCBSSS
T ss_pred             CCCchhHHHHHHHcCCEEEEeCCCHHHHHHhcccCceEEEEcCCCCCcCcccCHHHHHHHHHcCCEEEEEcchhhcccCC
Confidence            5899999999998888776556899999999988889999999999999986    48899999999999999  2  11


Q ss_pred             CCCCCC---CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcch
Q 024997           73 HFAPIP---APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNI  149 (259)
Q Consensus        73 ~~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  149 (259)
                      ...++.   +..+++++++|+||.+|++|+|+||++++ +++++.+.......+.+++++.|.++.++++..    .+.+
T Consensus       200 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~  274 (370)
T 2z61_A          200 KCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISN-DEIIEAILKLQQNLFISAPTISQYAALKAFEKE----TERE  274 (370)
T ss_dssp             CCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECC-HHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHH----HHHH
T ss_pred             CCcCHHHccCCCCcEEEEecChhccCCccceEEEEEEC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHHhcc----CHHH
Confidence            111221   24578999999999999999999999999 699999988877777789999999888888631    1356


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccC
Q 024997          150 FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRA  229 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~  229 (259)
                      +++.++.++++++.+.+.|++++              +....+++++++|++++....++...+++++||.++||..|+.
T Consensus       275 ~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~  340 (370)
T 2z61_A          275 INSMIKEFDRRRRLVLKYVKDFG--------------WEVNNPIGAYYVFPNIGEDGREFAYKLLKEKFVALTPGIGFGS  340 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT--------------CBCCCCCBTTEECCBCSSCHHHHHHHHHHHHCEECEEGGGGCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC--------------CeecCCCcceEEEEecCCCHHHHHHHHHHhCCEEEeCchhhCC
Confidence            78888999999999999998763              3344677899999998752234455555578999999999875


Q ss_pred             -CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          230 -EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       230 -~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                       +++++|||++.+++++++++++|++++++
T Consensus       341 ~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~~  370 (370)
T 2z61_A          341 KGKNYIRISYANSYENIKEGLERIKEFLNK  370 (370)
T ss_dssp             GGSSBEEEECCSCHHHHHHHHHHHHHHHC-
T ss_pred             CCCCEEEEEEeCCHHHHHHHHHHHHHHHhC
Confidence             46899999988999999999999998753

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=100.00  E-value=1.4e-33  Score=251.89  Aligned_cols=243  Identities=16%  Similarity=0.165  Sum_probs=190.1

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCC------CceEEEEcCCCCCChhhHH--------HhhcC
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSD------THLVEFVTAPNNPDGQMNK--------AVLKG   58 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~~--------~la~~   58 (259)
                      +|+|+.|...++..|.++.        +|.+|+++|++.+++      ++++|+++|||||||.+++        ++|++
T Consensus       189 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~  268 (500)
T 3tcm_A          189 IPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKN  268 (500)
T ss_dssp             ESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             CCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHH
Confidence            4899999999999988752        468899999988854      6889999999999999972        67999


Q ss_pred             CCcEEEeeccc----cCC--CCCCCC---------CCCCCeEEEecccccc-CCCcceEEEEEe---cCHHHHHHHHHhh
Q 024997           59 PYAKSIYDHAY----FWP--HFAPIP---------APADEELMIFTISKLT-GHAGSRFGWAVI---KDEAVYQRMSAYI  119 (259)
Q Consensus        59 ~~~~vi~De~y----~~~--~~~~~~---------~~~~~~i~~~S~SK~~-g~~G~R~G~i~~---~~~~~~~~~~~~~  119 (259)
                      +|+++|+||+|    |..  ...++.         ....++++++||||.| |++|+|+||+++   + +++++.+....
T Consensus       269 ~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~-~~~~~~l~~~~  347 (500)
T 3tcm_A          269 EGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFS-APVREQIYKIA  347 (500)
T ss_dssp             HTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCC-TTHHHHHHHHH
T ss_pred             cCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCC-HHHHHHHHHHH
Confidence            99999999999    221  122211         1223579999999999 899999999998   6 69999888766


Q ss_pred             hhhcCCCCHHHHHHHHHHHHHHHhcC-----CcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCC
Q 024997          120 SLNTMGVSRECQLRAFKLLKVVLEDG-----GNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPS  194 (259)
Q Consensus       120 ~~~~~~~~~~~q~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (259)
                      . ...+++.+.|.++..+++....++     ...+..+.+++++++++.+.+.|+++++             +.+..+++
T Consensus       348 ~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g-------------~~~~~~~g  413 (500)
T 3tcm_A          348 S-VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEG-------------ITCNEAEG  413 (500)
T ss_dssp             H-TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT-------------EECCCCCB
T ss_pred             h-cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------cEEecCCe
Confidence            4 467889999999888886210000     1234667788899999999999987643             66678999


Q ss_pred             CeeEEEecCCC--------------chHHHHHHHHHcCeeeecCCcccC--CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          195 PAYAWVKCERE--------------EDKDCYGILKAAKIIGREGKKFRA--EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       195 ~~~~~~~~~~~--------------~~~~~~~ll~~~gi~~~~g~~f~~--~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ++|+|+++...              +..++.++|+++||.++||+.|+.  +.+++|++++.+++++++++++|++++++
T Consensus       414 ~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~i~~l~~~~~~  493 (500)
T 3tcm_A          414 AMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEA  493 (500)
T ss_dssp             TTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTHHHHHHHHHHHHHH
T ss_pred             EEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            99999765421              122356888889999999999984  46799999998889999999999988763

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=100.00  E-value=1.3e-33  Score=243.00  Aligned_cols=240  Identities=15%  Similarity=0.123  Sum_probs=199.4

Q ss_pred             CCCcccchhhhhhccCcccccc----cChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDYKFE----GEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~----~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~De~   68 (259)
                      +|+|+.|...++..|.++..+.    +|+++|++.++++++++++++||||||.+++        ++|+++|+++|+||+
T Consensus       112 ~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~  191 (377)
T 3fdb_A          112 TPAYPPFFHLLSATQREGIFIDATGGINLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEI  191 (377)
T ss_dssp             ESCCTHHHHHHHHHTCCEEEEECTTSCCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred             CCCcHhHHHHHHHcCCEEEEccCCCCCCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence            4899999999998888764333    6889999998777899999999999999872        679999999999999


Q ss_pred             c--c--CC--CCCCCCC--CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q 024997           69 Y--F--WP--HFAPIPA--PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKV  140 (259)
Q Consensus        69 y--~--~~--~~~~~~~--~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  140 (259)
                      |  |  ..  ...++..  ..+++++++|+||.+|++|+|+||+++.++++++.+.......+.+++++.|.++.++++.
T Consensus       192 ~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  271 (377)
T 3fdb_A          192 HAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRY  271 (377)
T ss_dssp             TGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHH
T ss_pred             cchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhc
Confidence            9  2  22  2223322  2467899999999999999999998885479999998877767788999999999999884


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHHHHHh-cCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHc
Q 024997          141 VLEDGGNNIFEFGYNTMKKRWENLSKIISL-SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAA  217 (259)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~  217 (259)
                           .++++++.+++++++++.+.+.|++ +++             +....+++++++|++++..  +.+....+++++
T Consensus       272 -----~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  333 (377)
T 3fdb_A          272 -----GTDFLNQEVAYLKNNHDFLLHEIPKRIPG-------------AKITPMQATYLMWIDFRDTTIEGSPSEFFIEKA  333 (377)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHSTT-------------CEECCCSBCSEEEEECTTSCCCSCHHHHHHHHH
T ss_pred             -----cHHHHHHHHHHHHHHHHHHHHHHHhhCCC-------------ceEecCCeeEEEEEECcccCCCHHHHHHHHHhC
Confidence                 4567888999999999999999987 443             5566788899999998763  457788888878


Q ss_pred             CeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          218 KIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       218 gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ||.++||..|+. +++++|||++.+++++++++++|++++++
T Consensus       334 gi~v~~g~~~~~~~~~~~Ris~~~~~e~i~~~l~~l~~~l~~  375 (377)
T 3fdb_A          334 KVAMNDGAWFGEDGTGFCRLNFATSREVLEEAIDRMAKAVSH  375 (377)
T ss_dssp             CEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHTT
T ss_pred             CEEecCChhccCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence            999999999985 47899999988999999999999998864

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=100.00  E-value=8e-34  Score=255.25  Aligned_cols=243  Identities=18%  Similarity=0.279  Sum_probs=188.2

Q ss_pred             CCCcccchhhhhhccCccc----------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------Hhhc-CCCc
Q 024997            1 MPFYPLYQEQTDYFESVDY----------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLK-GPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~----------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~-~~~~   61 (259)
                      +|+|+.|...++..|..+.          .|.+|+++|++.++++++++++++||||||.+++        ++|+ ++|+
T Consensus       200 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~  279 (533)
T 3f6t_A          200 EPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKL  279 (533)
T ss_dssp             SSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTC
T ss_pred             CCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCC
Confidence            5899999998888776541          2678899999999889999999999999999972        6777 7999


Q ss_pred             EEEeeccc--cCCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHH-----------------------
Q 024997           62 KSIYDHAY--FWPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRM-----------------------  115 (259)
Q Consensus        62 ~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~-----------------------  115 (259)
                      ++|+||+|  |.....++. ...+++++++||||.+|++|+|+||++++++.+++.+                       
T Consensus       280 ~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p  359 (533)
T 3f6t_A          280 MIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDP  359 (533)
T ss_dssp             EEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCG
T ss_pred             EEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCc
Confidence            99999999  322222221 2346899999999999999999999999853233222                       


Q ss_pred             -------------HHhhhhhcCCCCHHHHHHH----HHHHHH-HHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 024997          116 -------------SAYISLNTMGVSRECQLRA----FKLLKV-VLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQ  177 (259)
Q Consensus       116 -------------~~~~~~~~~~~~~~~q~~~----~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  177 (259)
                                   .......+.+++++.|.++    ...+.. +-++..+.++.+.++.++++++.+.+.|. ++     
T Consensus       360 ~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~-----  433 (533)
T 3f6t_A          360 DKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-AP-----  433 (533)
T ss_dssp             GGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CC-----
T ss_pred             chhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CC-----
Confidence                         2333455678899999884    334420 00013567888999999999999999996 43     


Q ss_pred             cccccccccceeeCCCCCeeEEEecCC------------------CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEee
Q 024997          178 EIAPQYCTYFKKIRPPSPAYAWVKCER------------------EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL  239 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~  239 (259)
                               +....+.+++|+|++++.                  .+.+++..+++++||.+.||+.|+.+.+++|||++
T Consensus       434 ---------~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a  504 (533)
T 3f6t_A          434 ---------KDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQA  504 (533)
T ss_dssp             ---------CCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESS
T ss_pred             ---------ccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEe
Confidence                     344578999999999863                  23477788888999999999999987799999998


Q ss_pred             c-ChhhHHHHHHHHHHHhhh
Q 024997          240 K-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       240 ~-~~~~~~~~~~~l~~~l~~  258 (259)
                      . +++++++++++|++++++
T Consensus       505 ~~~~e~i~~~i~~L~~~l~~  524 (533)
T 3f6t_A          505 NLPTEDYALIGKQVLELLKE  524 (533)
T ss_dssp             SSCHHHHHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHHHHHH
Confidence            6 999999999999988753

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=100.00  E-value=1.4e-33  Score=254.04  Aligned_cols=237  Identities=16%  Similarity=0.231  Sum_probs=180.7

Q ss_pred             CCCcccchhhhhhcc--Ccc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------Hhh--cCCC
Q 024997            1 MPFYPLYQEQTDYFE--SVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVL--KGPY   60 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g--~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la--~~~~   60 (259)
                      +|+|+.|...+.+.+  .++        .+|.+|+++|++.+++++++++++|||||||.+++        ++|  +++|
T Consensus       201 ~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~  280 (546)
T 2zy4_A          201 MPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPD  280 (546)
T ss_dssp             ESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTT
T ss_pred             CCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCC
Confidence            599999998866543  332        24678999999888888999999999999999982        677  8899


Q ss_pred             cEEEeeccc--cCCCCCCCCC-CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHh-------------h-----
Q 024997           61 AKSIYDHAY--FWPHFAPIPA-PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAY-------------I-----  119 (259)
Q Consensus        61 ~~vi~De~y--~~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~-------------~-----  119 (259)
                      ++||+||+|  |.....++.. ..+++++++||||.+|++|+|+||++++++++++.+...             .     
T Consensus       281 ~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~  360 (546)
T 2zy4_A          281 LMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPD  360 (546)
T ss_dssp             CEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSC
T ss_pred             cEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhcccc
Confidence            999999999  3221222211 246899999999999999999999999842377776321             1     


Q ss_pred             ------------------hhhcCCCCHHHHHHHH-----HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 024997          120 ------------------SLNTMGVSRECQLRAF-----KLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSL  176 (259)
Q Consensus       120 ------------------~~~~~~~~~~~q~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  176 (259)
                                        ...+.+++.+.|.++.     ++++     ..+.+.++.++.++++++.+.+.|. ++    
T Consensus       361 p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~-----~~~~~~~~~r~~~~~r~~~l~~~L~-~~----  430 (546)
T 2zy4_A          361 VRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMD-----EADEYKHTLKQLIRRRETTLYRELG-MP----  430 (546)
T ss_dssp             GGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHGGGT-SS----
T ss_pred             ccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHhcC-CC----
Confidence                              1233578889888742     3333     2467788888889888888777774 22    


Q ss_pred             ccccccccccceeeCCCCCeeEEEecCC------------------CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEe
Q 024997          177 QEIAPQYCTYFKKIRPPSPAYAWVKCER------------------EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSL  238 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~  238 (259)
                                +...++++++|+|++++.                  .+.+++.++++++||.++||+.|+.+.+++|||+
T Consensus       431 ----------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~  500 (546)
T 2zy4_A          431 ----------PLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASL  500 (546)
T ss_dssp             ----------CCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEES
T ss_pred             ----------cccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEe
Confidence                      333477899999999753                  1245677888899999999999998778999999


Q ss_pred             ec-ChhhHHHHHHHHHHHhh
Q 024997          239 LK-SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       239 ~~-~~~~~~~~~~~l~~~l~  257 (259)
                      +. +++++++++++|+++++
T Consensus       501 ~~~~~e~i~~~~~~l~~~l~  520 (546)
T 2zy4_A          501 ANLNEYEYAAIGRALRKMAD  520 (546)
T ss_dssp             SSSCHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHH
Confidence            87 88999999999998875

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=100.00  E-value=4.5e-33  Score=240.75  Aligned_cols=238  Identities=16%  Similarity=0.199  Sum_probs=193.3

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        +|.+|+++|++.++++++++++++||||||.++        .++|+++|+++|
T Consensus       121 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li  200 (388)
T 1j32_A          121 APFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVL  200 (388)
T ss_dssp             SSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             CCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence            5899999999888887641        356788999999988899999999999999985        278999999999


Q ss_pred             eeccc--c--CC-CCCCCCC----CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 024997           65 YDHAY--F--WP-HFAPIPA----PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAF  135 (259)
Q Consensus        65 ~De~y--~--~~-~~~~~~~----~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~  135 (259)
                      +||+|  +  .. ...++..    ..+++++++|+||.+|++|+|+||++++ +++++.+.......+.+++++.|.++.
T Consensus       201 ~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~  279 (388)
T 1j32_A          201 SDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGP-VPLVKAATKIQGHSTSNVCTFAQYGAI  279 (388)
T ss_dssp             EECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECC-HHHHHHHHHHHHTTTCSCCHHHHHHHH
T ss_pred             EEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeC-HHHHHHHHHHHhhcccCCCHHHHHHHH
Confidence            99999  2  11 1122221    1457999999999999999999999999 699999988877777889999999988


Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC--Cc-hHHHHH
Q 024997          136 KLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--EE-DKDCYG  212 (259)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~  212 (259)
                      ++++.     .++++++.+++++++++.+.+.|+++++             +....+.+++++|++++.  .+ .++...
T Consensus       280 ~~l~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (388)
T 1j32_A          280 AAYEN-----SQDCVQEMLAAFAERRRYMLDALNAMPG-------------LECPKPDGAFYMFPSIAKTGRSSLDFCSE  341 (388)
T ss_dssp             HHHHS-----CSHHHHHHHHHHHHHHHHHHHHHHTCTT-------------CBCCCCCBTTEECCBCGGGTCCHHHHHHH
T ss_pred             HHHhC-----CcHHHHHHHHHHHHHHHHHHHHHhhCCC-------------CcccCCCeeEEEEEecCCCCCCHHHHHHH
Confidence            88873     4567888999999999999999987643             344567788999998863  23 345555


Q ss_pred             HHHHcCeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          213 ILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       213 ll~~~gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +++++||.++||..|+. ++++|+|++.+++++++++++|++++++
T Consensus       342 l~~~~gi~v~~g~~~~~-~~~iRis~~~~~~~i~~~~~~l~~~l~~  386 (388)
T 1j32_A          342 LLDQHQVATVPGAAFGA-DDCIRLSYATDLDTIKRGMERLEKFLHG  386 (388)
T ss_dssp             HHHHHCEECEEGGGGTC-TTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCEEEeChhhhCC-CCcEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            55568999999998875 4899999988999999999999998764

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=100.00  E-value=6.9e-33  Score=240.34  Aligned_cols=232  Identities=16%  Similarity=0.232  Sum_probs=185.3

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcC------C
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKG------P   59 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~------~   59 (259)
                      +|+|+.|...++..|.++.       +|.+|+++|++.++++++++++++||||||.+++        ++|++      +
T Consensus       131 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~  210 (398)
T 3ele_A          131 APYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGR  210 (398)
T ss_dssp             SSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCC
Confidence            5899999999998887652       4678899999999889999999999999999983        77888      9


Q ss_pred             CcEEEeeccc--c--CC-CCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHH------HHHHHHHhhhh-hcCCCC
Q 024997           60 YAKSIYDHAY--F--WP-HFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEA------VYQRMSAYISL-NTMGVS  127 (259)
Q Consensus        60 ~~~vi~De~y--~--~~-~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~------~~~~~~~~~~~-~~~~~~  127 (259)
                      |+++|+||+|  |  .. .........+++++++|+||.+|++|+|+||+++++ +      +.+.+...... ...+++
T Consensus       211 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  289 (398)
T 3ele_A          211 PIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPD-EVYDKAELYAAVCGAGRALGYVCAP  289 (398)
T ss_dssp             CCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEECCT-TSTTHHHHHHHHHHHHHHTTCCCSC
T ss_pred             CeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEEEEcc-hhhhHHHHHHHHHHHhhhccccCCC
Confidence            9999999999  2  22 122222456789999999999999999999999994 5      44444444333 246778


Q ss_pred             HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCch
Q 024997          128 RECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREED  207 (259)
Q Consensus       128 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (259)
                      .+.|.++..+++.     ..     .++.++++++.+.+.|++++              +....+++++++|++++..+.
T Consensus       290 ~~~~~a~~~~l~~-----~~-----~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~~~~~~~~~~~~~  345 (398)
T 3ele_A          290 SLFQKMIVKCQGA-----TG-----DINAYKENRDLLYEGLTRIG--------------YHCFKPDGAFYMFVKALEDDS  345 (398)
T ss_dssp             HHHHHHHTTCTTC-----CC-----CHHHHHHHHHHHHHHHHHHT--------------CCEECCSBSSEEEEECSSSCH
T ss_pred             HHHHHHHHHHhcC-----HH-----HHHHHHHHHHHHHHHHHHcC--------------CeecCCCeeEEEEEEcCCCCH
Confidence            8889888777762     22     26788899999999998763              455678899999999986555


Q ss_pred             HHHHHHHHHcCeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          208 KDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       208 ~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +.+.+.|.++||.++||..|+. ++++|||++.+++++++++++|++++++
T Consensus       346 ~~~~~~l~~~gi~v~~g~~~~~-~~~iRis~~~~~e~i~~~l~~l~~~l~~  395 (398)
T 3ele_A          346 NAFCEKAKEEDVLIVAADGFGC-PGWVRISYCVDREMIKHSMPAFEKIYKK  395 (398)
T ss_dssp             HHHHHHHHTTTEECEESGGGTC-TTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCEEEeCccccCC-CCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            5566677789999999999986 4899999988999999999999998764

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=100.00  E-value=1.7e-33  Score=244.64  Aligned_cols=239  Identities=17%  Similarity=0.173  Sum_probs=195.5

Q ss_pred             CCCcccchhhhhhccCccc------------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCC
Q 024997            1 MPFYPLYQEQTDYFESVDY------------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPY   60 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~   60 (259)
                      +|+|+.+...++..|.++.            .+.+|++.|++.++++++++++++||||||.+++        ++|+++|
T Consensus       133 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~  212 (407)
T 3nra_A          133 QPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYG  212 (407)
T ss_dssp             ESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             CCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcC
Confidence            4889999999988887652            3456889999988778899999999999999962        7899999


Q ss_pred             cEEEeeccc--c--CC-CCCCCC----CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHH
Q 024997           61 AKSIYDHAY--F--WP-HFAPIP----APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQ  131 (259)
Q Consensus        61 ~~vi~De~y--~--~~-~~~~~~----~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q  131 (259)
                      +++|+||+|  +  .. ....+.    ...+++++++|+||.+|++|+|+||++++ +++++.+.......+.+++++.|
T Consensus       213 ~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~  291 (407)
T 3nra_A          213 ATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS-RAIIARMEKLQAIVSLRAAGYSQ  291 (407)
T ss_dssp             CEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEEC-HHHHHHHHHHHHHHTSSSCHHHH
T ss_pred             CEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcC-HHHHHHHHHHHhhhccCCChHHH
Confidence            999999999  2  21 222221    23567999999999999999999999998 79999999888877888889999


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--c-hH
Q 024997          132 LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--E-DK  208 (259)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~  208 (259)
                      .++..+++.     ...++++.+++++++++.+.+.|+++++             +....+.+++++|++++..  + .+
T Consensus       292 ~a~~~~l~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~  353 (407)
T 3nra_A          292 AVLRGWFDE-----APGWMEDRIARHQAIRDELLHVLRGCEG-------------VFARTPQAGSYLFPRLPKLAVAPAE  353 (407)
T ss_dssp             GGGGGTTCC-----CTTHHHHHHHHHHHHHHHHHHHHHTSTT-------------CBCCCCSBSSEECCBCCCBSSCHHH
T ss_pred             HHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHhcCCC-------------ceeccCCeeEEEEEeCCCCCCCHHH
Confidence            888777762     4567888899999999999999987643             4445778889999998752  3 34


Q ss_pred             HHHHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          209 DCYGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       209 ~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +...+++++||.++||..|+. +.+++|||++.+++++++++++|++++++
T Consensus       354 ~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~~~~  404 (407)
T 3nra_A          354 FVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVER  404 (407)
T ss_dssp             HHHHHHHHHCEECEEGGGTCTTCTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            555555678999999999985 57899999988999999999999998764

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=100.00  E-value=1.6e-32  Score=235.17  Aligned_cols=229  Identities=18%  Similarity=0.195  Sum_probs=181.6

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEee
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIYD   66 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~D   66 (259)
                      +|+|+.|...++..|.++.      +|.+|+++|++.++ +++++++++||||||.+++        ++|+ +|+++|+|
T Consensus       107 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~D  184 (356)
T 1fg7_A          107 PPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVAD  184 (356)
T ss_dssp             SSSCTHHHHHHHHHTCEEEECCCCTTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEE
T ss_pred             CCChHHHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEE
Confidence            5899999999998887652      35688899998888 8899999999999999872        5677 99999999


Q ss_pred             ccc--cC--CCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHH
Q 024997           67 HAY--FW--PHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVL  142 (259)
Q Consensus        67 e~y--~~--~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~  142 (259)
                      |+|  |.  .+...+.+..+++++++|+||.+|++|+|+||++++ +++++.+......  ++++++.|.++.++++.. 
T Consensus       185 e~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~--~~~~~~~~~a~~~~l~~~-  260 (356)
T 1fg7_A          185 EAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLAN-EEVINLLMKVIAP--YPLSTPVADIAAQALSPQ-  260 (356)
T ss_dssp             CTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEEC-HHHHHHHHHHSCS--SCSCHHHHHHHHHHTSHH-
T ss_pred             ccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeC-HHHHHHHHHhcCC--CCCCHHHHHHHHHHhcCc-
Confidence            999  33  122222234567999999999999999999999998 7999998876553  478999999999888742 


Q ss_pred             hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeee
Q 024997          143 EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGR  222 (259)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~  222 (259)
                         ..+++++.+++++++++.+.+.|+++++             +....+.+++|+|++++  +.+.+.+.|.++||.++
T Consensus       261 ---~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------------~~~~~~~~~~~~~~~~~--~~~~l~~~L~~~gI~v~  322 (356)
T 1fg7_A          261 ---GIVAMRERVAQIIAEREYLIAALKEIPC-------------VEQVFDSETNYILARFK--ASSAVFKSLWDQGIILR  322 (356)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHSTT-------------EEEECCCSSSEEEEEET--THHHHHHHHHHTTEECE
T ss_pred             ---cHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------ceEECCCCCeEEEEECC--CHHHHHHHHHHCCEEEE
Confidence               1123788899999999999999987652             12234567889999987  34444455578999999


Q ss_pred             c-CCcccCCCCeEEEEeecChhhHHHHHHHHHHH
Q 024997          223 E-GKKFRAEARFVRLSLLKSQDDFDLLLHRLDEL  255 (259)
Q Consensus       223 ~-g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~  255 (259)
                      + |..|+.+ +++|||++ +++++++++++|+++
T Consensus       323 ~~g~~~~~~-~~iRis~~-~~~e~~~~~~~l~~~  354 (356)
T 1fg7_A          323 DQNKQPSLS-GCLRITVG-TREESQRVIDALRAE  354 (356)
T ss_dssp             ECTTSTTCT-TEEEEECC-CHHHHHHHHHHHHTC
T ss_pred             ECCCCCCCC-CeEEEEeC-CHHHHHHHHHHHHhh
Confidence            9 8887753 69999996 578999999998865

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=100.00  E-value=9.3e-34  Score=246.53  Aligned_cols=235  Identities=12%  Similarity=-0.001  Sum_probs=176.9

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCC--CCceEEEEcCC-CCCChhhHH--------HhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASS--DTHLVEFVTAP-NNPDGQMNK--------AVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~--~~~~~i~i~~p-~NPtG~~~~--------~la~~~~~   61 (259)
                      +|+|++|..+++..|.++.        +|++|++.|++.++  ++++++++++| |||||.+++        ++|+++|+
T Consensus       129 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~  208 (405)
T 3k7y_A          129 NPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKH  208 (405)
T ss_dssp             SSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCC
T ss_pred             CCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCe
Confidence            6999999999999998652        37889999998884  45677777665 899999993        78899999


Q ss_pred             EEEeeccc--c--CC-C--CCCC---CCCCCCeEEEeccccccCCCcceEEEEEe--cCHHHHHHHHH----hhhhhcCC
Q 024997           62 KSIYDHAY--F--WP-H--FAPI---PAPADEELMIFTISKLTGHAGSRFGWAVI--KDEAVYQRMSA----YISLNTMG  125 (259)
Q Consensus        62 ~vi~De~y--~--~~-~--~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i~~--~~~~~~~~~~~----~~~~~~~~  125 (259)
                      +||+||+|  |  +. .  ..++   ....+++|+++||||+|+++|||+||+++  +++++++.+..    ..+....+
T Consensus       209 ~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  288 (405)
T 3k7y_A          209 VIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSS  288 (405)
T ss_dssp             EEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSS
T ss_pred             EEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCC
Confidence            99999999  3  21 1  0111   13457899999999999999999999864  34677665543    33334456


Q ss_pred             CCHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHH----hcCCCccccccccccccceeeCCCCCeeEEE
Q 024997          126 VSRECQLRAFKLLKVVL-EDGGNNIFEFGYNTMKKRWENLSKIIS----LSNRFSLQEIAPQYCTYFKKIRPPSPAYAWV  200 (259)
Q Consensus       126 ~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (259)
                      ++.+.|.++..+++... .+...+++.+.+++++++++.+.+.|+    +++.      +    ..|.+..+++|+|+|+
T Consensus       289 ~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~------~----~~~~~~~p~gg~f~~~  358 (405)
T 3k7y_A          289 PVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNL------N----YDWNVYKKQRGLFSFV  358 (405)
T ss_dssp             CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC------C----CCGGGGSSCCSSEEEC
T ss_pred             CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC------C----CCCccccCCceEEEec
Confidence            77899999888887310 000234566778889999999999998    6541      0    0045568999999999


Q ss_pred             ecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          201 KCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       201 ~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      +++.   +++..+ +++||.++||.         |||++. +++++++++++|++++++
T Consensus       359 ~l~~---~~~~~L-~~~gV~v~p~~---------Ris~a~~~~~~i~~~~~~i~~~~~~  404 (405)
T 3k7y_A          359 PLLA---KIAEHL-KTHHIYIINNG---------RINVSGITKNNVDYIADKICLSLSQ  404 (405)
T ss_dssp             GGGG---GGTTTT-TTTTEECCTTS---------EEEGGGCCTTHHHHHHHHHHHHHHC
T ss_pred             CCCH---HHHHHH-HHCCEeecCCC---------eEEEeccCHHHHHHHHHHHHHHHhh
Confidence            8753   455565 88999999942         999987 899999999999998864

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=5.7e-33  Score=239.23  Aligned_cols=235  Identities=17%  Similarity=0.209  Sum_probs=188.6

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEee
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIYD   66 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~D   66 (259)
                      +|+|+.|...++..|.++.      +|.+|+++|++.++++++++++++||||||.+++        ++|+++|+++|+|
T Consensus       118 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D  197 (376)
T 2dou_A          118 EVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHD  197 (376)
T ss_dssp             SSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence            5899999999988887652      3457888898888777899999999999999862        7899999999999


Q ss_pred             ccc--c--CCCCCC---CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q 024997           67 HAY--F--WPHFAP---IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLK  139 (259)
Q Consensus        67 e~y--~--~~~~~~---~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~  139 (259)
                      |+|  |  .....+   ..+..+++++++|+||.+|++|+|+||++++ +++++.+.......+.+++++.|.++.++++
T Consensus       198 e~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~  276 (376)
T 2dou_A          198 NPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGS-EEALARLERVKGVIDFNQYAGVLRMGVEALK  276 (376)
T ss_dssp             CTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEEC-HHHHHHHHHHHHHHCCCSCHHHHHHHHHHHT
T ss_pred             ccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecC-HHHHHHHHHHHHhcccCCCHHHHHHHHHHHh
Confidence            999  3  221111   1123467999999999999999999999998 7999999888777777889999999998887


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcC
Q 024997          140 VVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAK  218 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~g  218 (259)
                      .     .++++++.++.++++++.+.+.|+++               +....+.+|+|+|++++.. +.+.+.+.|.++|
T Consensus       277 ~-----~~~~~~~~~~~~~~~~~~l~~~L~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  336 (376)
T 2dou_A          277 T-----PKEVVRGYARVYRERALGMAEALKGV---------------LSLLPPRATMYLWGRLPEGVDDLEFGLRLVERG  336 (376)
T ss_dssp             S-----CHHHHHHHHHHHHHHHHHHHHHHTTT---------------SEECCCCBSSEEEEECCTTCCHHHHHHHHHHTT
T ss_pred             C-----cHHHHHHHHHHHHHHHHHHHHHHHHh---------------cCccCCCeeEEEEEECCCCCCHHHHHHHHHHCC
Confidence            3     35678888999999999999998753               1234567889999998743 3333444444569


Q ss_pred             eeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          219 IIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       219 i~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      |.++||..|+. +++++|||++.+++++++++++|++++
T Consensus       337 i~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          337 VALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREAL  375 (376)
T ss_dssp             EECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred             EEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence            99999998875 468999999888999999999999876

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.1e-32  Score=240.26  Aligned_cols=238  Identities=16%  Similarity=0.212  Sum_probs=192.9

Q ss_pred             CCCcccchhhhhhccCccc---------ccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHhhcCCCcEE
Q 024997            1 MPFYPLYQEQTDYFESVDY---------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVLKGPYAKS   63 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~---------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~v   63 (259)
                      +|+|+.|...++..|.++.         +|.+|++.|++.++++++++++++|+||||.++        .++|+++|+++
T Consensus       117 ~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~l  196 (411)
T 2o0r_A          117 EPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVV  196 (411)
T ss_dssp             ESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred             CCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Confidence            4899999999888887652         355889999999988899999999999999986        27899999999


Q ss_pred             Eeeccc--c--CC-CCCCCC---CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 024997           64 IYDHAY--F--WP-HFAPIP---APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAF  135 (259)
Q Consensus        64 i~De~y--~--~~-~~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~  135 (259)
                      |+||+|  +  .. ...++.   ...+++++++|+||.+|++|+|+||++++ +++++.+.......+++.+++.|.++.
T Consensus       197 i~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~  275 (411)
T 2o0r_A          197 ITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGP-AELIAGVRAAKQYLSYVGGAPFQPAVA  275 (411)
T ss_dssp             EEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECC-HHHHHHHHHHHHHHTSCCCTTHHHHHH
T ss_pred             EEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeC-HHHHHHHHHHHhhccCCCChHHHHHHH
Confidence            999999  2  11 112221   23567999999999999999999999998 799999988776666778889999998


Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC---Cc-hHHHH
Q 024997          136 KLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER---EE-DKDCY  211 (259)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~  211 (259)
                      .+++.     .+.++++.++.++++++.+.+.|++++              +....+++|+++|++++.   .+ .++..
T Consensus       276 ~~l~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  336 (411)
T 2o0r_A          276 LALDT-----EDAWVAALRNSLRARRDRLAAGLTEIG--------------FAVHDSYGTYFLCADPRPLGYDDSTEFCA  336 (411)
T ss_dssp             HHHHH-----CHHHHHHHHHHHHHHHHHHHHHHHHHT--------------CEECCCCBSSEEEEECGGGTCCCHHHHHH
T ss_pred             HHHhC-----ChHHHHHHHHHHHHHHHHHHHHHHHcC--------------CEecCCCeeEEEEEecCCCCCCCHHHHHH
Confidence            88874     356788889999999999999998763              445567789999999875   22 35555


Q ss_pred             HHHHHcCeeeecCCcccC------------CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          212 GILKAAKIIGREGKKFRA------------EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       212 ~ll~~~gi~~~~g~~f~~------------~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      .+++++||.++||..|..            +++++|||++.+++++++++++|++++++
T Consensus       337 ~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~~~~  395 (411)
T 2o0r_A          337 ALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLAER  395 (411)
T ss_dssp             HHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHHHHHHGGGGC-
T ss_pred             HHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            567678999999998842            25789999988899999999999988753

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=100.00  E-value=1.2e-32  Score=238.84  Aligned_cols=240  Identities=14%  Similarity=0.104  Sum_probs=191.4

Q ss_pred             CCCcccchhhhhhccCccc---------ccccChhhhcccCC-CCceEEEEcCCCCCChhhHH--------HhhcCCCcE
Q 024997            1 MPFYPLYQEQTDYFESVDY---------KFEGEANLWGNASS-DTHLVEFVTAPNNPDGQMNK--------AVLKGPYAK   62 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~---------~~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~   62 (259)
                      +|+|+.|...++..|.++.         .|.+|+++|++.++ ++++++++++||||||.+++        ++|+++|++
T Consensus       120 ~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~  199 (399)
T 1c7n_A          120 TPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLM  199 (399)
T ss_dssp             SSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCE
T ss_pred             CCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCE
Confidence            5899999999888887652         24488899999886 68899999999999999862        889999999


Q ss_pred             EEeeccc--c--CC-CCCCCCCC----CCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcC-CCCHHHHH
Q 024997           63 SIYDHAY--F--WP-HFAPIPAP----ADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTM-GVSRECQL  132 (259)
Q Consensus        63 vi~De~y--~--~~-~~~~~~~~----~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~-~~~~~~q~  132 (259)
                      +|+||+|  |  .. ...++...    .+++++++|+||.+|++|+|+||++++++++++.+.......+. +++++.|.
T Consensus       200 li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  279 (399)
T 1c7n_A          200 LWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYK  279 (399)
T ss_dssp             EEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHH
T ss_pred             EEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHH
Confidence            9999999  2  11 12222222    46789999999999999999999999755799998887765544 67899999


Q ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh-cCCCccccccccccccceeeCCCCCeeEEEecCC--Cch-H
Q 024997          133 RAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISL-SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--EED-K  208 (259)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~  208 (259)
                      ++.++++.     .++++++.++.++++++.+.+.|++ +++             +....+.+++++|++++.  .+. +
T Consensus       280 a~~~~l~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~  341 (399)
T 1c7n_A          280 ACEICYKE-----CGKWLDGCIKVIDKNQRIVKDFFEVNHPE-------------IKAPLIEGTYLQWIDFRALKMDHKA  341 (399)
T ss_dssp             HHHHHHHH-----CHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------------SBCCCCSBSSEEEEECGGGCCCHHH
T ss_pred             HHHHHHhC-----ChHHHHHHHHHHHHHHHHHHHHHHhhCCC-------------CeEecCCceEEEEEEcccCCCCHHH
Confidence            98888874     3567888899999999999999987 554             334567888999999874  234 4


Q ss_pred             HHHHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          209 DCYGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       209 ~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +...+++++||.++||..|+. +++++|||++..++++++++++|.+++++
T Consensus       342 ~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~  392 (399)
T 1c7n_A          342 MEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKD  392 (399)
T ss_dssp             HHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEEeCccccCCCCCCeEEEEeccCHHHHHHHHHHHHHHHHH
Confidence            444555578999999998874 46899999988888999999999988753

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=100.00  E-value=5.5e-33  Score=243.69  Aligned_cols=237  Identities=19%  Similarity=0.270  Sum_probs=183.6

Q ss_pred             CCCcccchhhhhhccC------------cccccccChh-hhcccC--CCCceEEEEcCCCCCChhhHH--------Hhhc
Q 024997            1 MPFYPLYQEQTDYFES------------VDYKFEGEAN-LWGNAS--SDTHLVEFVTAPNNPDGQMNK--------AVLK   57 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~------------~~~~~~~d~~-~l~~~~--~~~~~~i~i~~p~NPtG~~~~--------~la~   57 (259)
                      +|+|++|...++..|.            .+..+..+.+ .+...+  .++++++++++||||||.+++        ++|+
T Consensus       149 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~  228 (432)
T 3ei9_A          149 DPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEFAK  228 (432)
T ss_dssp             ESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhhCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHH
Confidence            4899999999888774            2222222221 111111  357889999999999999872        6799


Q ss_pred             CCCcEEEeeccc--c--CCCCCCC---CCCCCCeEEEeccccccCCCcceEEEEEecCHHH--------HHHHHHhhhhh
Q 024997           58 GPYAKSIYDHAY--F--WPHFAPI---PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAV--------YQRMSAYISLN  122 (259)
Q Consensus        58 ~~~~~vi~De~y--~--~~~~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~--------~~~~~~~~~~~  122 (259)
                      ++|+++|+||+|  |  +....++   .+..+++++++|+||.||++|+|+||+++++ ++        ++.+.......
T Consensus       229 ~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~  307 (432)
T 3ei9_A          229 KNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPK-KLLYSDGFPVAKDFNRIICTC  307 (432)
T ss_dssp             HHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCT-TCBCTTSCBHHHHHHHHHHHS
T ss_pred             HcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEECh-HHhhcchHHHHHHHHHHhccc
Confidence            999999999999  3  2222222   2335679999999999999999999999994 76        78787776666


Q ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEec
Q 024997          123 TMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKC  202 (259)
Q Consensus       123 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (259)
                      ..+++++.|.++.+++...    ...++++.+++++++++.+.+.|++++              +....+.+++|+|+++
T Consensus       308 ~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~~~~~~~~  369 (432)
T 3ei9_A          308 FNGASNISQAGALACLTPE----GLEAMHKVIGFYKENTNIIIDTFTSLG--------------YDVYGGKNAPYVWVHF  369 (432)
T ss_dssp             CCCSCHHHHHHHHHHSSHH----HHHHHHHHHHHHHHHHHHHHHHHHHTT--------------CCEEECSSSSEEEEEC
T ss_pred             cCCCCHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHHHHHHCC--------------ceecCCCcceEEEEEC
Confidence            6778999999988888631    235788889999999999999998763              4455677899999999


Q ss_pred             CCCc-hHHHHHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          203 EREE-DKDCYGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       203 ~~~~-~~~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      +..+ .+++..+++++||.++||..|+. +++++|||++.+++++++++++|++-.
T Consensus       370 ~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~rl~~~~  425 (432)
T 3ei9_A          370 PNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFKQLY  425 (432)
T ss_dssp             TTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence            8543 46677788888999999999985 578999999889999999999998753

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=4.9e-32  Score=237.37  Aligned_cols=244  Identities=13%  Similarity=0.158  Sum_probs=192.4

Q ss_pred             CCCcccchhhhhhccCccccc-----ccChhhhcccCC-CCceEEEEc-CCCCCChhhHH--------Hhh-cCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDYKF-----EGEANLWGNASS-DTHLVEFVT-APNNPDGQMNK--------AVL-KGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~-----~~d~~~l~~~~~-~~~~~i~i~-~p~NPtG~~~~--------~la-~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++..+     ++|+++|++.++ +++++++++ +||||||.+++        ++| +++|++||
T Consensus       140 ~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii  219 (427)
T 3ppl_A          140 VPGYDRHFSITERFGFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVV  219 (427)
T ss_dssp             ESCCHHHHHHHHHTTCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEE
T ss_pred             CCCcHHHHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEE
Confidence            489999999999998876332     478889999884 678887755 78999999982        778 89999999


Q ss_pred             eeccc----cCCCC-C--CCC------CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHH
Q 024997           65 YDHAY----FWPHF-A--PIP------APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQ  131 (259)
Q Consensus        65 ~De~y----~~~~~-~--~~~------~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q  131 (259)
                      +||+|    |.... .  ++.      +..+++++++||||. +++|+|+||++++ +++++.+.........+++++.|
T Consensus       220 ~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G~r~G~~~~~-~~l~~~~~~~~~~~~~~~~~~~q  297 (427)
T 3ppl_A          220 WDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKI-TLAGAGVSFFLTS-AENRKWYTGHAGIRGIGPNKVNQ  297 (427)
T ss_dssp             EECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTT-SCTTSSCEEEECC-HHHHHHHHHHHHHHCSCCCHHHH
T ss_pred             EECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhc-cCcCccEEEEEcC-HHHHHHHHHHhhcccCCCCHHHH
Confidence            99999    32211 1  111      256789999999999 6799999999999 79999999988878899999999


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh-cCCCccccccccccccceeeCCCCCeeEEEecCCCchHHH
Q 024997          132 LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISL-SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDC  210 (259)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (259)
                      .++..+++..  +..+.++.+.++.++++++.+.+.|.+ ++.+     .     .+.+..|++|+|+|++++..+.+.+
T Consensus       298 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~-----~-----~~~~~~p~~g~~~~~~~~~~~~~~~  365 (427)
T 3ppl_A          298 LAHARYFGDA--EGVRAVMRKHAASLAPKFNKVLEILDSRLAEY-----G-----VAQWTVPAGGYFISLDVVPGTASRV  365 (427)
T ss_dssp             HHHHHHHCSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-----T-----CCEECCCSBSSCEEEECSTTCHHHH
T ss_pred             HHHHHHHhCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----C-----ceEEeCCCccEEEEEECCcchHHHH
Confidence            9999998731  012456788888999999999888865 2210     0     1445578899999999986555666


Q ss_pred             HHHHHHcCeeeec-CCcccC----CCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          211 YGILKAAKIIGRE-GKKFRA----EARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       211 ~~ll~~~gi~~~~-g~~f~~----~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      .+.|.++||.++| |..|+.    ..+++|||++. +++++++++++|.+++++
T Consensus       366 ~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~  419 (427)
T 3ppl_A          366 AELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLL  419 (427)
T ss_dssp             HHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            7778889999999 556652    46899999987 889999999999988763

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=100.00  E-value=4.7e-33  Score=245.25  Aligned_cols=240  Identities=20%  Similarity=0.290  Sum_probs=186.4

Q ss_pred             CCCcccchhhhhhccCc----------ccccccChh-hhcccC--CCCceEEEEcCCCCCChhhHH--------HhhcCC
Q 024997            1 MPFYPLYQEQTDYFESV----------DYKFEGEAN-LWGNAS--SDTHLVEFVTAPNNPDGQMNK--------AVLKGP   59 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~----------~~~~~~d~~-~l~~~~--~~~~~~i~i~~p~NPtG~~~~--------~la~~~   59 (259)
                      +|+|+.|...++..|.+          +..+..+.+ .+...+  .++++++++++||||||.+++        ++|+++
T Consensus       162 ~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~  241 (449)
T 3qgu_A          162 DPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKN  241 (449)
T ss_dssp             ESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC
Confidence            48999999999999877          543443332 222222  157889999999999999872        778999


Q ss_pred             CcEEEeeccc--c--CCC-CCCC---CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHH--------HHHHhhhhhc
Q 024997           60 YAKSIYDHAY--F--WPH-FAPI---PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQ--------RMSAYISLNT  123 (259)
Q Consensus        60 ~~~vi~De~y--~--~~~-~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~--------~~~~~~~~~~  123 (259)
                      |+++|+||+|  |  .+. ..++   ....+++++++|+||.+|++|+|+||++++ +++++        .+........
T Consensus       242 ~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  320 (449)
T 3qgu_A          242 GSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVP-KALKYANGEPVHADWNRVMTTCF  320 (449)
T ss_dssp             TCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECC-TTCBCTTSCBHHHHHHHHHHHSC
T ss_pred             CcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecC-HHHHhhhhhhHHHHHHHHhhccc
Confidence            9999999999  3  221 1122   223567899999999999999999999999 47765        4555555556


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecC
Q 024997          124 MGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCE  203 (259)
Q Consensus       124 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (259)
                      .+++++.|.++.++++..    ...++.+.+++++++++.+.+.|++++              +....+++++|+|++++
T Consensus       321 ~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~~~~~~~~~  382 (449)
T 3qgu_A          321 NGASNIVQAGGLACLQPE----GLKEMNAMIKFYKENAQILKTTFTEMG--------------FSVYGGDDAPYIWVGFP  382 (449)
T ss_dssp             CCCCHHHHHHHHHHTSHH----HHHHHHHHHHHHHHHHHHHHHHHHHTT--------------CCEEESSSSSEEEEECT
T ss_pred             CCCCHHHHHHHHHHHhhc----CHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CeeeCCCCeeEEEEECC
Confidence            688999999999888742    235788889999999999999998764              45567788999999997


Q ss_pred             CCc-hHHHHHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhhC
Q 024997          204 REE-DKDCYGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISKE  259 (259)
Q Consensus       204 ~~~-~~~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~~  259 (259)
                      ..+ .+++..+++++||.++||..|+. +++++|||++.+++++++++++|+++++++
T Consensus       383 ~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~  440 (449)
T 3qgu_A          383 GKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENILEAVRRFKEAYGKR  440 (449)
T ss_dssp             TSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence            433 46667778778999999999985 578999999779999999999999998764

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=100.00  E-value=1.7e-32  Score=240.68  Aligned_cols=241  Identities=17%  Similarity=0.125  Sum_probs=194.5

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccC-CCCceEEEEcCCCCCChhhH--------HHhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNAS-SDTHLVEFVTAPNNPDGQMN--------KAVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~-~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.       +|.+|+++|++.+ +++++++++++||||||.++        .++|+++|+++|
T Consensus       140 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li  219 (437)
T 3g0t_A          140 DPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVI  219 (437)
T ss_dssp             ESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEE
Confidence            4899999999998888763       3457889999998 77899999999999999987        278999999999


Q ss_pred             eeccc--c--CCC--C-------CCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHH-H----------------
Q 024997           65 YDHAY--F--WPH--F-------APIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQ-R----------------  114 (259)
Q Consensus        65 ~De~y--~--~~~--~-------~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~-~----------------  114 (259)
                      +||+|  +  ...  .       ..+.+..+++++++|+||.+|++|+|+||++++ +++++ .                
T Consensus       220 ~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  298 (437)
T 3g0t_A          220 EDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMIS-GKLYEREYPDLEESFGRLRFGEA  298 (437)
T ss_dssp             EECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEEC-HHHHHCBCGGGHHHHSCSBHHHH
T ss_pred             EEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEEC-HHHhhhhhhcccccccccchhHH
Confidence            99999  2  211  1       122234678999999999999999999999999 69998 7                


Q ss_pred             -HHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceee---
Q 024997          115 -MSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKI---  190 (259)
Q Consensus       115 -~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---  190 (259)
                       +.........+++++.|.++..+++...  ..+.++++.+++++++++.+.+.|++++              +...   
T Consensus       299 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~  362 (437)
T 3g0t_A          299 LSSSALYALSSGATHSAQWGMAAMLKACN--DGEYNFRDSVIEYGRKARIMKKMFLDNG--------------FNIVYDK  362 (437)
T ss_dssp             HHTTHHHHHHSSSCHHHHHHHHHHHHHHH--TTSCCHHHHHHHHHHHHHHHHHHHHTTT--------------EEESSCE
T ss_pred             HHHHHHhhhcCCCCHHHHHHHHHHHhCcH--hHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------CEEeccc
Confidence             7776666678899999999999998521  1223388899999999999999999763              3344   


Q ss_pred             ----CCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCC-CeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          191 ----RPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEA-RFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       191 ----~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~-~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                          ++.+++|+|++++..+.+.+.+.|.++||.++||..|+... +++|||++. +++++++++++|++++++
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          363 DGNEPLADGFYFTVGYKGMDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             ETTEECCSSSEEEEEETTCCHHHHHHHHHHTTEECEESTTTTCCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred             cCCCCCceeEEEEEecCCCCHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence                33789999999985455555555667899999999888654 889999987 999999999999998764

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=100.00  E-value=4.8e-33  Score=239.53  Aligned_cols=232  Identities=16%  Similarity=0.186  Sum_probs=187.5

Q ss_pred             CCCcccchhhhhhccCcccccccChh-----hhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEeec
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEGEAN-----LWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIYDH   67 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~d~~-----~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~De   67 (259)
                      +|+|+.|...++..|.++..+..+.+     +|++.+.++++++++++||||||.+++        ++|+++|+++|+||
T Consensus       115 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De  194 (376)
T 3ezs_A          115 NPFYQIYEGAAKFIKAKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDE  194 (376)
T ss_dssp             ESCCTHHHHHHHHTTCEEEEEECCGGGTSCCCCCHHHHHHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             cCCcHhHHHHHHHcCCEEEEcccCCCCCcchhHHhhhccCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEc
Confidence            48999999999988887754444333     566666667889999999999999972        67999999999999


Q ss_pred             cc--c--CCCCCCCCC--------CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 024997           68 AY--F--WPHFAPIPA--------PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAF  135 (259)
Q Consensus        68 ~y--~--~~~~~~~~~--------~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~  135 (259)
                      +|  |  .....++..        ..+++++++|+||.+|++|+|+||++++ +++++.+.......+.+++++.|.++.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~  273 (376)
T 3ezs_A          195 CYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGD-SRLLEKYKAFRAYLGYTSANAIQKASE  273 (376)
T ss_dssp             TTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEEC-HHHHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred             cchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeC-HHHHHHHHHHHhhhcCCCChHHHHHHH
Confidence            99  2  121111111        4678999999999999999999999998 799999998887777889999999999


Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHH
Q 024997          136 KLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILK  215 (259)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  215 (259)
                      .+++      ..+++++.++.++++++.+.+.|+  +              +.  .+.+++|+|++++ ...++...+++
T Consensus       274 ~~l~------~~~~~~~~~~~~~~~~~~l~~~l~--~--------------~~--~~~~~~~~~~~~~-~~~~~~~~l~~  328 (376)
T 3ezs_A          274 AAWL------DDRHAEFFRNIYANNLKLARKIFK--N--------------TL--IYPYSFYVYLPVQ-NGENFAKTLYQ  328 (376)
T ss_dssp             HHHH------CSHHHHHHHHHHHHHHHHHHHHST--T--------------CC--CCSBSSEEEEECS-CHHHHHHHHHH
T ss_pred             HHHh------CcHHHHHHHHHHHHHHHHHHHHhc--C--------------CC--CCCcceEEEEECC-CHHHHHHHHHH
Confidence            9998      345678888899999998888876  2              32  5678999999997 23455556665


Q ss_pred             HcCeeeecCCcccC---CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          216 AAKIIGREGKKFRA---EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       216 ~~gi~~~~g~~f~~---~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ++||.++||..|+.   +.+++|||++.+++++++++++|++++++
T Consensus       329 ~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~~  374 (376)
T 3ezs_A          329 NEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYREN  374 (376)
T ss_dssp             HHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHHCC
T ss_pred             hCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence            58999999999983   57899999988999999999999998864

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=1.6e-32  Score=237.67  Aligned_cols=233  Identities=23%  Similarity=0.263  Sum_probs=189.7

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        +|.+|+++|++.++++++++++++||||||.++        .++|+++|+++|
T Consensus       132 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li  211 (389)
T 1o4s_A          132 SPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYII  211 (389)
T ss_dssp             ESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             CCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            4899999999988887652        356788999999988899999999999999985        278999999999


Q ss_pred             eecccc----CCCCCCCC---CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Q 024997           65 YDHAYF----WPHFAPIP---APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKL  137 (259)
Q Consensus        65 ~De~y~----~~~~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  137 (259)
                      +||+|.    .....++.   ...+++++++|+||.+|++|+|+||++++ +++++.+.......+.+++++.|.++.++
T Consensus       212 ~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~  290 (389)
T 1o4s_A          212 SDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISS-EKVATAVSKIQSHTTSCINTVAQYAALKA  290 (389)
T ss_dssp             EECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECC-HHHHHHHHHHHHHHTCSCCHHHHHHHHHH
T ss_pred             EEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeC-HHHHHHHHHHhhhcccCCCHHHHHHHHHH
Confidence            999992    11111111   22578999999999999999999999998 69999998887777788899999988888


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCc-hHHHHHHHHH
Q 024997          138 LKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREE-DKDCYGILKA  216 (259)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~  216 (259)
                      ++.     .   +++.++.++++++.+.+.|++++              +....+++++++|++++ .+ .++...++++
T Consensus       291 l~~-----~---~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~  347 (389)
T 1o4s_A          291 LEV-----D---NSYMVQTFKERKNFVVERLKKMG--------------VKFVEPEGAFYLFFKVR-GDDVKFCERLLEE  347 (389)
T ss_dssp             TTC-----C---CHHHHHHHHHHHHHHHHHHHHTT--------------CCCCCCSBSSEEEEECS-SCHHHHHHHHHHH
T ss_pred             Hhc-----c---HHHHHHHHHHHHHHHHHHHHhcC--------------CeeecCCcceEEEEeCC-CCHHHHHHHHHHH
Confidence            872     2   67778899999999999998762              33446778899999886 33 4455555558


Q ss_pred             cCeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          217 AKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       217 ~gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +||.++||..|+. ++++|+|++.+++++++++++|.+++++
T Consensus       348 ~gi~v~~g~~f~~-~~~~Ris~~~~~~~l~~~l~~l~~~l~~  388 (389)
T 1o4s_A          348 KKVALVPGSAFLK-PGFVRLSFATSIERLTEALDRIEDFLNS  388 (389)
T ss_dssp             HCEECEEGGGGTC-TTEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEeCchhcCC-CCeEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            8999999998876 4799999988999999999999998764

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=100.00  E-value=1.9e-32  Score=236.65  Aligned_cols=240  Identities=14%  Similarity=0.115  Sum_probs=194.2

Q ss_pred             CCCcccchhhhhhccCccc---------ccccChhhhcccCC-CCceEEEEcCCCCCChhhH--------HHhhcCCCcE
Q 024997            1 MPFYPLYQEQTDYFESVDY---------KFEGEANLWGNASS-DTHLVEFVTAPNNPDGQMN--------KAVLKGPYAK   62 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~---------~~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~   62 (259)
                      +|+|+.+...++..|.++.         .|.+|+++|++.++ ++++++++++||||||.++        .++|+++|++
T Consensus       116 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~  195 (391)
T 3dzz_A          116 EPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVL  195 (391)
T ss_dssp             SSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCE
T ss_pred             CCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCE
Confidence            5889999999988887652         23488999999996 7899999999999999995        2789999999


Q ss_pred             EEeeccc--c--CC-CCCCCC----CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhh-hcCCCCHHHHH
Q 024997           63 SIYDHAY--F--WP-HFAPIP----APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL-NTMGVSRECQL  132 (259)
Q Consensus        63 vi~De~y--~--~~-~~~~~~----~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~-~~~~~~~~~q~  132 (259)
                      +|+||+|  |  .. ...++.    ...+++++++|+||.+|++|+|+||++++++++++.+...... ...+++++.|.
T Consensus       196 li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (391)
T 3dzz_A          196 LISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIP  275 (391)
T ss_dssp             EEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHH
T ss_pred             EEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHH
Confidence            9999999  2  11 222222    1256789999999999999999999999756899998877543 34678889999


Q ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh-cCCCccccccccccccceeeCCCCCeeEEEecCCC--ch-H
Q 024997          133 RAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISL-SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--ED-K  208 (259)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~  208 (259)
                      ++..+++.     .+.++++.+++++++++.+.+.|++ +++             +....+.+++++|++++..  +. +
T Consensus       276 a~~~~l~~-----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~  337 (391)
T 3dzz_A          276 AAIAAYEE-----GHDWLRELKQVLRDNFAYAREFLAKEVPE-------------VKVLDSNASYLAWVDISALGMNAED  337 (391)
T ss_dssp             HHHHHHHH-----CHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------------SEECCCCBSSEEEEECGGGCSCHHH
T ss_pred             HHHHHHhc-----cHHHHHHHHHHHHHHHHHHHHHHHhhCCC-------------cEEeccCceEEEEEehhhcCCCHHH
Confidence            99888874     4567888999999999999999987 554             4556788899999998752  44 4


Q ss_pred             HHHHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          209 DCYGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       209 ~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +...+++++||.++||..|+. +++++|||++.+++++++++++|.+++++
T Consensus       338 ~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~~  388 (391)
T 3dzz_A          338 FCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKELVIDGMQRLKQGVLN  388 (391)
T ss_dssp             HHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            455555689999999999985 46899999988999999999999998864

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=100.00  E-value=2.4e-32  Score=235.71  Aligned_cols=237  Identities=14%  Similarity=0.218  Sum_probs=192.7

Q ss_pred             CCCcccchhhhhhccCccc---------ccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHhhcCCCcEE
Q 024997            1 MPFYPLYQEQTDYFESVDY---------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVLKGPYAKS   63 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~---------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~v   63 (259)
                      +|+|+.|...++..|.++.         .+.+|+++|++.++++++++++++||||||.++        .++|+++|+++
T Consensus       109 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~l  188 (381)
T 1v2d_A          109 EPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFL  188 (381)
T ss_dssp             ESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred             CCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEE
Confidence            4899999998888887652         245788999999988899999999999999986        27899999999


Q ss_pred             Eeecccc----CCCCCCCCC-CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 024997           64 IYDHAYF----WPHFAPIPA-PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLL  138 (259)
Q Consensus        64 i~De~y~----~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l  138 (259)
                      |+||+|.    +....++.. ..+++++++|+||.+|++|+|+||++++ +++++.+........++++++.|.++..++
T Consensus       189 i~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l  267 (381)
T 1v2d_A          189 ISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGP-KEFMPRLAGMRQWTSFSAPTPLQAGVAEAL  267 (381)
T ss_dssp             EEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECC-TTTHHHHHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred             EEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeC-HHHHHHHHHHHhhcccCCCcHHHHHHHHHH
Confidence            9999992    111112111 3578999999999999999999999998 599998887776667888999999998888


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcC
Q 024997          139 KVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAK  218 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g  218 (259)
                      +..   ..++++++.+++++++++.+.+.|++.+              +....+++++++|++++..  + +..+++++|
T Consensus       268 ~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~~~~~~~~~~~--~-~~~~l~~~g  327 (381)
T 1v2d_A          268 KLA---RREGFYEALREGYRRRRDLLAGGLRAMG--------------LRVYVPEGTYFLMAELPGW--D-AFRLVEEAR  327 (381)
T ss_dssp             HHH---HHTTHHHHHHHHHHHHHHHHHHHHHHTT--------------CCEECCSBSSEEEEECTTC--C-HHHHHHHTC
T ss_pred             hCc---ccHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CEecCCCcceEEEEecChH--h-HHHHHHhCC
Confidence            742   0156788889999999999999998743              4455677889999998754  3 777788899


Q ss_pred             eeeecCCcccC---CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          219 IIGREGKKFRA---EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       219 i~~~~g~~f~~---~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      |.++||..|+.   +.+++|||++.+.+++++++++|++++++
T Consensus       328 i~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~l~~  370 (381)
T 1v2d_A          328 VALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVNS  370 (381)
T ss_dssp             EECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC--
T ss_pred             EEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence            99999998874   46899999988999999999999988753

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=100.00  E-value=6.3e-32  Score=235.56  Aligned_cols=240  Identities=17%  Similarity=0.178  Sum_probs=181.9

Q ss_pred             CCCcccchhhhhhc----c--Ccc-----c--ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCC
Q 024997            1 MPFYPLYQEQTDYF----E--SVD-----Y--KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGP   59 (259)
Q Consensus         1 ~P~y~~~~~~~~~~----g--~~~-----~--~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~   59 (259)
                      +|+|+.|...+...    +  ..+     .  .|.+|+++|+  ++++++++++++||||||.+++        ++|+++
T Consensus       135 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~  212 (417)
T 3g7q_A          135 APEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQH  212 (417)
T ss_dssp             CCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred             CCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHc
Confidence            47888877665322    1  111     1  3568888888  6778999999999999999972        789999


Q ss_pred             CcEEEeecccc--CCC--CCCC-CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHH
Q 024997           60 YAKSIYDHAYF--WPH--FAPI-PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRA  134 (259)
Q Consensus        60 ~~~vi~De~y~--~~~--~~~~-~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  134 (259)
                      |+++|+||+|-  .+.  .... +...+++++++|+|| ++.+|+|+||++++ +++++.+.......+.+++++.|.++
T Consensus       213 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (417)
T 3g7q_A          213 NIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSK-LGLPGSRCGIIIAN-DKTITAIANMNGIISLAPGGMGPAMM  290 (417)
T ss_dssp             TCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GTCTTSCCEEEECC-HHHHHHHHHHHHHHCCCCCSHHHHHH
T ss_pred             CCEEEEeCCCccccccccccccccCCCCCEEEEEechh-ccCCCcceEEEEeC-HHHHHHHHHhhcceeeCCCcHHHHHH
Confidence            99999999992  111  1111 234678999999999 57899999999998 79999999988888888999999999


Q ss_pred             HHHHHHHHhcCCcchHHH-HHHHHHHHHHHHHHHHHh-cCCCccccccccccccceeeCCCCCeeEEEecCC--CchHHH
Q 024997          135 FKLLKVVLEDGGNNIFEF-GYNTMKKRWENLSKIISL-SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--EEDKDC  210 (259)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  210 (259)
                      ..+++..   ....+..+ .++.++++++.+.+.|++ ++.+.           +....+++|+++|++++.  .+.+.+
T Consensus       291 ~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----------~~~~~~~~g~~~~~~~~~~~~~~~~l  356 (417)
T 3g7q_A          291 CEMIKRN---DLLRLSETVIKPFYYQRVQQTIAIIRRYLSEER-----------CLIHKPEGAIFLWLWFKDLPITTELL  356 (417)
T ss_dssp             HHHHHTT---CHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTT-----------CEEECCCBSSEEEEECTTCSSCHHHH
T ss_pred             HHHHcCc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-----------ceeeCCCcceEEEEEcCCCCCCHHHH
Confidence            9999841   11222333 567788888888888876 33211           445678899999999985  245555


Q ss_pred             HHHHHHcCeeeecCCcccCC--------CCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          211 YGILKAAKIIGREGKKFRAE--------ARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       211 ~~ll~~~gi~~~~g~~f~~~--------~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      .+.|.++||.++||..|+.+        .+++|||++.+++++++++++|++++++
T Consensus       357 ~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~  412 (417)
T 3g7q_A          357 YQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEEIER  412 (417)
T ss_dssp             HHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            56667899999999998753        4799999988999999999999998764

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=100.00  E-value=6.9e-32  Score=235.44  Aligned_cols=239  Identities=15%  Similarity=0.153  Sum_probs=186.3

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        +|.+|+++|++.++++++++++++||||||.+++        ++|+++|+++|
T Consensus       135 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li  214 (416)
T 1bw0_A          135 QPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLF  214 (416)
T ss_dssp             ESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEE
T ss_pred             CCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEE
Confidence            4899999999988887652        3568899999999888899999999999999872        78999999999


Q ss_pred             eeccc--c--CCC-----CCCCC--CCCCCeEEEeccccccCCCcceEEEEEecCH-HHHHHH----HHhhhhhcCCCCH
Q 024997           65 YDHAY--F--WPH-----FAPIP--APADEELMIFTISKLTGHAGSRFGWAVIKDE-AVYQRM----SAYISLNTMGVSR  128 (259)
Q Consensus        65 ~De~y--~--~~~-----~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~-~~~~~~----~~~~~~~~~~~~~  128 (259)
                      +||+|  |  ...     ..++.  ...+++++++|+||.++++|+|+||++++++ ++++.+    .... ....++++
T Consensus       215 ~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  293 (416)
T 1bw0_A          215 SDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVG-MLVCGPCT  293 (416)
T ss_dssp             EECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHH-HHHTCSCH
T ss_pred             EEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHh-ccccCCCc
Confidence            99999  2  221     22332  2234689999999999999999999999853 243333    3322 13467889


Q ss_pred             HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC----
Q 024997          129 ECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER----  204 (259)
Q Consensus       129 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  204 (259)
                      +.|.++.++++.    ..+.++++.+++++++++.+.+.|+++++             +....+.+|+|+|++++.    
T Consensus       294 ~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~  356 (416)
T 1bw0_A          294 VVQAALGEALLN----TPQEHLDQIVAKIEESAMYLYNHIGECIG-------------LAPTMPRGAMYLMSRIDLEKYR  356 (416)
T ss_dssp             HHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHHHHHHTTSTT-------------EEECCCCBTTEEEEEECGGGBS
T ss_pred             HHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CcccCCCeeEEEEEeCCHHHcC
Confidence            999999999883    13567888899999999999999987543             444567789999988753    


Q ss_pred             --Cc-hHHHHHHHHHcCeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          205 --EE-DKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       205 --~~-~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                        .+ .++...+++++||.++||..|+. ++++|||++.+++++++++++|.+++++
T Consensus       357 ~~~~~~~~~~~l~~~~gi~v~~g~~f~~-~~~iRis~~~~~e~l~~~l~~l~~~l~~  412 (416)
T 1bw0_A          357 DIKTDVEFFEKLLEEENVQVLPGTIFHA-PGFTRLTTTRPVEVYREAVERIKAFCQR  412 (416)
T ss_dssp             SCCSHHHHHHHHHHHHCEECEEGGGGTC-TTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHCCEEEecccccCC-CCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence              22 34556666788999999998875 4899999987899999999999998764

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=100.00  E-value=1.2e-31  Score=231.80  Aligned_cols=238  Identities=15%  Similarity=0.158  Sum_probs=190.4

Q ss_pred             CCCcccchhhhhhccCccc----------ccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHhhcCCCcE
Q 024997            1 MPFYPLYQEQTDYFESVDY----------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVLKGPYAK   62 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~----------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~   62 (259)
                      +|+|+.|...++..|.++.          .|.+|+++|++.+++ ++++++++||||||.++        .++|+++|++
T Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~  199 (391)
T 4dq6_A          121 EPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVK  199 (391)
T ss_dssp             SSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCE
T ss_pred             CCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCE
Confidence            5899999999998887652          134788999999977 99999999999999995        2789999999


Q ss_pred             EEeeccc--c--CC-CCCCCCCC----CCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhh-cCCCCHHHHH
Q 024997           63 SIYDHAY--F--WP-HFAPIPAP----ADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN-TMGVSRECQL  132 (259)
Q Consensus        63 vi~De~y--~--~~-~~~~~~~~----~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~-~~~~~~~~q~  132 (259)
                      +|+||+|  |  .. ...++...    .+++++++|+||.+|++|+|+||++++++++.+.+....... ..+++++.|.
T Consensus       200 li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (391)
T 4dq6_A          200 IISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLV  279 (391)
T ss_dssp             EEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHH
T ss_pred             EEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHH
Confidence            9999999  2  11 12222211    367899999999999999999999998558999888775543 3478889999


Q ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh-cCCCccccccccccccceeeCCCCCeeEEEecCC--Cch-H
Q 024997          133 RAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISL-SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--EED-K  208 (259)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~  208 (259)
                      ++..+++.     .++++++.+++++++++.+.+.|++ +++             +....+++++++|++++.  .+. +
T Consensus       280 a~~~~l~~-----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~  341 (391)
T 4dq6_A          280 ATEASYNN-----GESWLESFLEYLESNIDFAIKYINENMPK-------------LKVRKPEGTYLLWVDFSALGLSDEE  341 (391)
T ss_dssp             HHHHHHHH-----CHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------------SEECCCSBSSEEEEECGGGCCCHHH
T ss_pred             HHHHHHhc-----hHHHHHHHHHHHHHHHHHHHHHHHhhCCC-------------CEecCCCccEEEEEEhhhcCCCHHH
Confidence            98888884     4567888899999999999999987 443             555678889999999874  244 4


Q ss_pred             HHHHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          209 DCYGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       209 ~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      +...+++++||.++||..|+. +.+++|+|++.+++++++++++|+++++
T Consensus       342 ~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~  391 (391)
T 4dq6_A          342 LESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSMLEEALIRIKNAIN  391 (391)
T ss_dssp             HHHHHHHTTCEECEEGGGGCTTCTTEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcCCHHHHHHHHHHHHHHhC
Confidence            444555444999999999985 4689999998899999999999998763

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=100.00  E-value=2.7e-32  Score=238.63  Aligned_cols=240  Identities=15%  Similarity=0.204  Sum_probs=194.5

Q ss_pred             CCCcccchhhhhhccCccc---------ccccChhhhcccCC-CCceEEEEcCCCCCChhhH--------HHhhcCCCcE
Q 024997            1 MPFYPLYQEQTDYFESVDY---------KFEGEANLWGNASS-DTHLVEFVTAPNNPDGQMN--------KAVLKGPYAK   62 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~---------~~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~   62 (259)
                      +|+|+.+...++..|.++.         .|.+|+++|++.++ ++++++++++||||||.++        .++|+++|++
T Consensus       150 ~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~  229 (421)
T 3l8a_A          150 SPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVI  229 (421)
T ss_dssp             ESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCE
T ss_pred             CCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCE
Confidence            4889999988888877652         24578999999996 7899999999999999885        2789999999


Q ss_pred             EEeeccc--c---CCCCCCCC----CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhh-hcCCCCHHHHH
Q 024997           63 SIYDHAY--F---WPHFAPIP----APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL-NTMGVSRECQL  132 (259)
Q Consensus        63 vi~De~y--~---~~~~~~~~----~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~-~~~~~~~~~q~  132 (259)
                      +|+||+|  |   +....++.    +..++++++.|+||.+|++|+|+||++++++++.+.+...... ...+++++.|.
T Consensus       230 li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~  309 (421)
T 3l8a_A          230 LVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMI  309 (421)
T ss_dssp             EEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHH
T ss_pred             EEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHH
Confidence            9999999  2   11122221    2346789999999999999999999999866899988876643 34478899999


Q ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---chHH
Q 024997          133 RAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---EDKD  209 (259)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  209 (259)
                      ++.++++.     .++++++.++.++++++.+.+.|+++++             +....+++++++|++++..   ..++
T Consensus       310 a~~aal~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------------i~~~~~~~~~~~~v~~~~~~~~~~~l  371 (421)
T 3l8a_A          310 ATQAAFQY-----GKPWLEELKTVIEGNIKLVIKELEAKTK-------------IKVMEPEGTYLVWLDFSAYAIAQPQL  371 (421)
T ss_dssp             HHHHHHHH-----CHHHHHHHHHHHHHHHHHHHHHHHHHCS-------------CEEECCSBSSEEEEECGGGTCCTTHH
T ss_pred             HHHHHHhc-----cHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------ceEeCCCeeEEEEEeccccCCCHHHH
Confidence            99999884     5567888999999999999999987643             5567889999999998752   3455


Q ss_pred             HHHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          210 CYGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       210 ~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ...+++++||.+.+|..|+. +.+++||+++.+++++++++++|++++++
T Consensus       372 ~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~~  421 (421)
T 3l8a_A          372 SEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRIISVFGK  421 (421)
T ss_dssp             HHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHhCCEEEECchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhC
Confidence            66666678999999999985 57999999988999999999999998753

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=100.00  E-value=2e-32  Score=238.34  Aligned_cols=238  Identities=17%  Similarity=0.225  Sum_probs=190.5

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++.        +|.+|++.|++.++++++++++++|+||||.++        .++|+++|+++|
T Consensus       132 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li  211 (406)
T 1xi9_A          132 GPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVI  211 (406)
T ss_dssp             ESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEE
T ss_pred             CCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEE
Confidence            4899999999888887652        355788999999988899999999999999975        278999999999


Q ss_pred             eeccc--c--CCCCCCCCCC-CCC-eEEEeccccccCCCcceEEEEE--ecCH----HHHHHHHHhhhhhcCCCCHHHHH
Q 024997           65 YDHAY--F--WPHFAPIPAP-ADE-ELMIFTISKLTGHAGSRFGWAV--IKDE----AVYQRMSAYISLNTMGVSRECQL  132 (259)
Q Consensus        65 ~De~y--~--~~~~~~~~~~-~~~-~i~~~S~SK~~g~~G~R~G~i~--~~~~----~~~~~~~~~~~~~~~~~~~~~q~  132 (259)
                      +||+|  +  .....++... .++ +++++|+||.+|++|+|+||++  ++ +    ++++.+....... .+++++.|.
T Consensus       212 ~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-~~~~~~l~~~l~~~~~~~-~~~~~~~~~  289 (406)
T 1xi9_A          212 SDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDP-ENKLSEVREAIDRLARIR-LCPNTPAQF  289 (406)
T ss_dssp             EECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECT-TCTTHHHHHHHHHHHHHT-CCSCSHHHH
T ss_pred             EEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEEEEEecC-chhHHHHHHHHHHHHHhh-cCCCHHHHH
Confidence            99999  2  1111111111 567 8999999999999999999999  88 7    8999888776655 778899999


Q ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC---Cc-hH
Q 024997          133 RAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER---EE-DK  208 (259)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~  208 (259)
                      ++.++++.     ..+++++.++.++++++.+.+.|+++++             +....+.+++++|++++.   .+ .+
T Consensus       290 a~~~~l~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (406)
T 1xi9_A          290 AAIAGLTG-----PMDYLKEYMKKLKERRDYIYKRLNEIPG-------------ISTTKPQGAFYIFPKIEVGPWKNDKE  351 (406)
T ss_dssp             HHHHHHHS-----CCHHHHHHHHHHHHHHHHHHHHHHTSTT-------------EECCCCCBSSEECCEECSCSCSSHHH
T ss_pred             HHHHHHhC-----CcHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CeeecCCeeEEEEEecCccCCCCHHH
Confidence            99999963     3455788889999999999999987643             444567788999988763   23 34


Q ss_pred             HHHHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          209 DCYGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       209 ~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +...+++++||.++||..|+. +++++|||++.+++++++++++|++++++
T Consensus       352 l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~~~~l~~~l~~  402 (406)
T 1xi9_A          352 FVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKE  402 (406)
T ss_dssp             HHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            455556588999999998874 46899999988899999999999998764

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=100.00  E-value=6.9e-32  Score=236.43  Aligned_cols=240  Identities=18%  Similarity=0.216  Sum_probs=183.7

Q ss_pred             CCCcccchhhh-hhccCcc--------cccccChhhhcccCC------CCceEEEEcCCCCCChhhHH--------Hhhc
Q 024997            1 MPFYPLYQEQT-DYFESVD--------YKFEGEANLWGNASS------DTHLVEFVTAPNNPDGQMNK--------AVLK   57 (259)
Q Consensus         1 ~P~y~~~~~~~-~~~g~~~--------~~~~~d~~~l~~~~~------~~~~~i~i~~p~NPtG~~~~--------~la~   57 (259)
                      +|+|+.|...+ ...|.++        .+|.+|+++|++.++      ++++++++++||||||.+++        ++|+
T Consensus       139 ~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~  218 (428)
T 1iay_A          139 SPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTN  218 (428)
T ss_dssp             SSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             cCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHH
Confidence            58899887644 3566654        235678888888774      36888999999999999873        7899


Q ss_pred             CCCcEEEeecccc----CC-CCCCCC---CC-------CCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhh
Q 024997           58 GPYAKSIYDHAYF----WP-HFAPIP---AP-------ADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN  122 (259)
Q Consensus        58 ~~~~~vi~De~y~----~~-~~~~~~---~~-------~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~  122 (259)
                      ++|+++|+||+|.    .. ...++.   ..       .++++++.|+||.+|++|+|+||++++++++++.+...... 
T Consensus       219 ~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~-  297 (428)
T 1iay_A          219 QHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSF-  297 (428)
T ss_dssp             TTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTT-
T ss_pred             HCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhc-
Confidence            9999999999992    11 121211   22       57889999999999999999999999547899888865443 


Q ss_pred             cCCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEe
Q 024997          123 TMGVSRECQLRAFKLLKVVLEDG-GNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVK  201 (259)
Q Consensus       123 ~~~~~~~~q~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (259)
                       ++++++.|.++..+++..   . .+.++++.++.++++++.+.+.|++++              +.+..+++|+|+|++
T Consensus       298 -~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~g~~~~~~  359 (428)
T 1iay_A          298 -GLVSTQTQYFLAAMLSDE---KFVDNFLRESAMRLGKRHKHFTNGLEVVG--------------IKCLKNNAGLFCWMD  359 (428)
T ss_dssp             -SCCCHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------------CCBCCCSSSSEEEEE
T ss_pred             -ccCCHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CcccCCCeeEEEEEe
Confidence             568899999998888731   0 123667788899999999999998763              334466689999999


Q ss_pred             cCCC-------ch-HHHHHHHHHcCeeeecCCcccC-CCCeEEEEee-cChhhHHHHHHHHHHHhhhC
Q 024997          202 CERE-------ED-KDCYGILKAAKIIGREGKKFRA-EARFVRLSLL-KSQDDFDLLLHRLDELISKE  259 (259)
Q Consensus       202 ~~~~-------~~-~~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~-~~~~~~~~~~~~l~~~l~~~  259 (259)
                      ++..       +. ++...+++++||.+++|..|+. +++++||+++ .+++++++++++|+++++++
T Consensus       360 ~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~  427 (428)
T 1iay_A          360 LRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVE  427 (428)
T ss_dssp             CGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred             chhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhcc
Confidence            8752       12 3445555556999999998875 3689999998 49999999999999998764

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=100.00  E-value=3.5e-32  Score=238.83  Aligned_cols=240  Identities=19%  Similarity=0.223  Sum_probs=186.8

Q ss_pred             CCCcccchhhhh-hccCccc--------ccccChhhhcccCCC------CceEEEEcCCCCCChhhHH--------Hhhc
Q 024997            1 MPFYPLYQEQTD-YFESVDY--------KFEGEANLWGNASSD------THLVEFVTAPNNPDGQMNK--------AVLK   57 (259)
Q Consensus         1 ~P~y~~~~~~~~-~~g~~~~--------~~~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~~--------~la~   57 (259)
                      +|+|+.+...+. ..|.++.        +|.+|+++|++.+++      ++++|++++||||||.+++        ++|+
T Consensus       142 ~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~  221 (435)
T 3piu_A          142 TPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVE  221 (435)
T ss_dssp             ESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             CCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Confidence            488998888777 5676652        355788999988843      7899999999999999872        7899


Q ss_pred             CCCcEEEeeccc----cCC-CCCCCC---CC---------CCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh
Q 024997           58 GPYAKSIYDHAY----FWP-HFAPIP---AP---------ADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS  120 (259)
Q Consensus        58 ~~~~~vi~De~y----~~~-~~~~~~---~~---------~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~  120 (259)
                      ++|+++|+||+|    |.. ...++.   ..         .+++++++|+||.+|++|+|+||++++++++.+.+.....
T Consensus       222 ~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~  301 (435)
T 3piu_A          222 DKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS  301 (435)
T ss_dssp             HHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGG
T ss_pred             HcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhh
Confidence            999999999999    222 122211   11         5678999999999999999999999965678887776554


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEE
Q 024997          121 LNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWV  200 (259)
Q Consensus       121 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (259)
                      .  ..++++.|.++..+++...  ..++++.+.+++++++++.+.+.|++++              +....+.+|+++|+
T Consensus       302 ~--~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~g~~~~~  363 (435)
T 3piu_A          302 F--GLVSSQTQHLLSAMLSDKK--LTKNYIAENHKRLKQRQKKLVSGLQKSG--------------ISCLNGNAGLFCWV  363 (435)
T ss_dssp             G--SCCCHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTT--------------CEECCCCSSSEEEE
T ss_pred             c--CCCCHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CcccCCCeeEEEEE
Confidence            3  5678899999888887310  0023566778888999999999988653              55567888899999


Q ss_pred             ecCCC--------chHHHHHHHHHcCeeeecCCcccC-CCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          201 KCERE--------EDKDCYGILKAAKIIGREGKKFRA-EARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       201 ~~~~~--------~~~~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      +++..        ..++...+++++||.++||..|+. +++++||+++. +++++++++++|++++++
T Consensus       364 ~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~  431 (435)
T 3piu_A          364 DMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGE  431 (435)
T ss_dssp             ECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             EcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence            99753        235566667666999999999874 57899999987 999999999999998763

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=100.00  E-value=1.3e-31  Score=234.16  Aligned_cols=246  Identities=14%  Similarity=0.141  Sum_probs=192.8

Q ss_pred             CCCcccchhhhhhccCcccc-----cccChhhhcccC--CCCceEEEE-cCCCCCChhhHH--------Hhh-cCCCcEE
Q 024997            1 MPFYPLYQEQTDYFESVDYK-----FEGEANLWGNAS--SDTHLVEFV-TAPNNPDGQMNK--------AVL-KGPYAKS   63 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~-----~~~d~~~l~~~~--~~~~~~i~i-~~p~NPtG~~~~--------~la-~~~~~~v   63 (259)
                      +|+|+.|...++..|.++..     .++|+++|++.+  +++++++++ ++||||||.+++        ++| +++|+++
T Consensus       131 ~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~l  210 (423)
T 3ez1_A          131 VPGYDRHFLLLQTLGFELLTVDMQSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTI  210 (423)
T ss_dssp             ESCCHHHHHHHHHHTCEEEEEEEETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEE
T ss_pred             CCCcHHHHHHHHHcCCEEEeccCCCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEE
Confidence            48999999999999887632     247889999988  578888764 489999999983        677 8999999


Q ss_pred             Eeecccc----CC-CCCCCC---------CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHH
Q 024997           64 IYDHAYF----WP-HFAPIP---------APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRE  129 (259)
Q Consensus        64 i~De~y~----~~-~~~~~~---------~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~  129 (259)
                      |+||+|-    .. ......         +..+++++++||||. +++|+|+||++++ +++++.+.........+++++
T Consensus       211 i~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~  288 (423)
T 3ez1_A          211 FADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKI-TFAGAGLGFVASS-EDNIRWLSKYLGAQSIGPNKV  288 (423)
T ss_dssp             EEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTT-SCSSSSCEEEEEC-HHHHHHHHHHHHHSCSCCCHH
T ss_pred             EEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhh-ccCCcceEEEEeC-HHHHHHHHHHHhhhccCCCHH
Confidence            9999992    11 111111         256789999999999 5699999999999 799999999888788899999


Q ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh-cCCCccccccccccccceeeCCCCCeeEEEecCCCchH
Q 024997          130 CQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISL-SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDK  208 (259)
Q Consensus       130 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (259)
                      .|.++..+++.+. +....++.+.++.++++++.+.+.|.+ ++.+.        . .+.+..|.+|+|+|++++..+.+
T Consensus       289 ~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~--------~-~~~~~~p~~g~~~~~~~~~~~~~  358 (423)
T 3ez1_A          289 EQARHVKFLTEYP-GGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGG--------E-YATWTLPKGGYFISLDTAEPVAD  358 (423)
T ss_dssp             HHHHHHHHHHHST-THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT--------S-SEEECCCSBSSCEEEEESSSCHH
T ss_pred             HHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC--------C-ceEEeCCCccEEEEEECCCCcHH
Confidence            9999999998410 012356777888888888888888764 22110        0 13445788999999999865667


Q ss_pred             HHHHHHHHcCeeeec-CCcccC----CCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          209 DCYGILKAAKIIGRE-GKKFRA----EARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       209 ~~~~ll~~~gi~~~~-g~~f~~----~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      .+.++++++||.++| |..|+.    .++++|||++. +++++++++++|++++++
T Consensus       359 ~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~  414 (423)
T 3ez1_A          359 RVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVVAACIRL  414 (423)
T ss_dssp             HHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence            777888899999999 777752    46899999987 999999999999998763

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=1.4e-31  Score=231.58  Aligned_cols=239  Identities=13%  Similarity=0.113  Sum_probs=186.6

Q ss_pred             CCCcccchhhhhhccCccc---------ccccChhhhcccCCC-CceEEEEcCCCCCChhhH--------HHhhcCCCcE
Q 024997            1 MPFYPLYQEQTDYFESVDY---------KFEGEANLWGNASSD-THLVEFVTAPNNPDGQMN--------KAVLKGPYAK   62 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~---------~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~--------~~la~~~~~~   62 (259)
                      +|+|+.|...++..|.++.         .|.+|+++|++.+++ +++++++++||||||.++        .++|+++|++
T Consensus       118 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~  197 (390)
T 1d2f_A          118 TPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVR  197 (390)
T ss_dssp             ESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCE
T ss_pred             CCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCE
Confidence            4899999999888887652         245888999998865 789989999999999986        2789999999


Q ss_pred             EEeeccc--c--C-CCCCCCCCCCCC--eEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh-hhcC-CCCHHHHHH
Q 024997           63 SIYDHAY--F--W-PHFAPIPAPADE--ELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS-LNTM-GVSRECQLR  133 (259)
Q Consensus        63 vi~De~y--~--~-~~~~~~~~~~~~--~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~-~~~~-~~~~~~q~~  133 (259)
                      +|+||+|  |  . ....++......  .. ++|+||.+|++|+|+||++++++++++.+..... ..+. +++++.|.+
T Consensus       198 li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  276 (390)
T 1d2f_A          198 VISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTA  276 (390)
T ss_dssp             EEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHH
T ss_pred             EEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHH
Confidence            9999999  2  1 112222222111  34 9999999999999999999865688888887665 3443 788999998


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh-cCCCccccccccccccceeeCCCCCeeEEEecCC--CchH-H
Q 024997          134 AFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISL-SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--EEDK-D  209 (259)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~  209 (259)
                      +.++++.     .++++++.++.++++++.+.+.|++ +++             +....+.+++++|++++.  .+.. +
T Consensus       277 ~~~~l~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l  338 (390)
T 1d2f_A          277 HIAAYQQ-----GAPWLDALRIYLKDNLTYIADKMNAAFPE-------------LNWQIPQSTYLAWLDLRPLNIDDNAL  338 (390)
T ss_dssp             HHHHHHH-----CHHHHHHHHHHHHHHHHHHHHHHHHHCSS-------------CCCCCCSBCSEEEEECGGGCCCHHHH
T ss_pred             HHHHHhc-----CHHHHHHHHHHHHHHHHHHHHHHHhhCCC-------------CEEecCCccEEEEEEccccCCCHHHH
Confidence            8888873     3567888899999999999999987 543             334567788999999875  2344 4


Q ss_pred             HHHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          210 CYGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       210 ~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ...+++++||.++||..|+. +++++|||++.+++++++++++|.+++++
T Consensus       339 ~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~  388 (390)
T 1d2f_A          339 QKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRA  388 (390)
T ss_dssp             HHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCEEeeCccccCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            44445478999999999874 46899999988889999999999998764

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.98  E-value=5e-32  Score=237.24  Aligned_cols=242  Identities=13%  Similarity=0.103  Sum_probs=188.9

Q ss_pred             CCCcccchhhhhhccCccccc-----ccChhhhcccCCC--------CceEE-EEcCCCCCChhhHH--------HhhcC
Q 024997            1 MPFYPLYQEQTDYFESVDYKF-----EGEANLWGNASSD--------THLVE-FVTAPNNPDGQMNK--------AVLKG   58 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~-----~~d~~~l~~~~~~--------~~~~i-~i~~p~NPtG~~~~--------~la~~   58 (259)
                      +|+|+.|...++..|.++..+     .+|+++|++.+++        ++++| ++++||||||.+++        ++|++
T Consensus       140 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~  219 (425)
T 1vp4_A          140 DPAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEK  219 (425)
T ss_dssp             ESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHcCCEEEEeccCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHH
Confidence            489999999998888776333     3678888888754        67886 57999999999872        78999


Q ss_pred             CCcEEEeeccc--c--CCC-CCCCC--CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHH
Q 024997           59 PYAKSIYDHAY--F--WPH-FAPIP--APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQ  131 (259)
Q Consensus        59 ~~~~vi~De~y--~--~~~-~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q  131 (259)
                      +|+++|+||+|  |  ... ..++.  +..+++++++|+||.+| +|+|+||++++ +++++.+.......+.+++++.|
T Consensus       220 ~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~  297 (425)
T 1vp4_A          220 YDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAGS-KEFIRKIVQAKQSADLCSPAITH  297 (425)
T ss_dssp             TTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEECC-HHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             cCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccceEEEeeC-HHHHHHHHHHhhhhcCCCCHHHH
Confidence            99999999999  2  111 12221  23467999999999999 99999999999 79999998877766778899999


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhc-CCCccccccccccccceeeCCCCCeeEEEecCCC-c-hH
Q 024997          132 LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLS-NRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-E-DK  208 (259)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~  208 (259)
                      .++.++++..   ..++++.+.++.++++++.+.+.|+++ +..     +     .+....+.+|+|+|++++.. + .+
T Consensus       298 ~a~~~~l~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-----~-----g~~~~~~~~g~~~~~~~~~~~~~~~  364 (425)
T 1vp4_A          298 RLAARYLERY---DLLEQLKPTIELYRRKRTVMLNALEEYFSDI-----P-----GVKWVKSEGGLFIWLTLPEGFDTWE  364 (425)
T ss_dssp             HHHHHHHHHS---CHHHHTHHHHHHHHHHHHHHHHHHHHHSTTS-----T-----TCEECCCSBSSEEEEECCTTCCTTT
T ss_pred             HHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----C-----ceEEecCCccEEEEEEcCCCCCHHH
Confidence            9999999841   124677888999999999999999864 210     0     04445678899999999742 2 44


Q ss_pred             HHHHHHHHcCeeeecCCcccC---CCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          209 DCYGILKAAKIIGREGKKFRA---EARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       209 ~~~~ll~~~gi~~~~g~~f~~---~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      +...++ ++||.++||..|+.   +++++|||++. +++++++++++|++++++
T Consensus       365 l~~~l~-~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~~~l~~  417 (425)
T 1vp4_A          365 MFEYAK-RKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLE  417 (425)
T ss_dssp             THHHHH-HHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HCCCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            555555 45999999998864   36899999987 789999999999988753

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.98  E-value=2.7e-31  Score=231.39  Aligned_cols=238  Identities=17%  Similarity=0.203  Sum_probs=187.9

Q ss_pred             CCCcccchhhhhhccCccccccc------C-hhhhcccCCCCceEEEEcCCCCCChhhH--------HHhhcCCCcEEEe
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEG------E-ANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVLKGPYAKSIY   65 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~------d-~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~vi~   65 (259)
                      +|+|+.|...++..|.++..+..      + +++|++.++++++++++++||||||.++        .++|+++|+++|+
T Consensus       133 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~  212 (409)
T 2gb3_A          133 EPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIV  212 (409)
T ss_dssp             ESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCchhHHHHHHHcCCEEEEeccCCCCCCccHHHHHHhhCcCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence            48999999998888876532222      1 6788888888899999999999999875        2889999999999


Q ss_pred             eccc--c--CCCCCC-CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q 024997           66 DHAY--F--WPHFAP-IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKV  140 (259)
Q Consensus        66 De~y--~--~~~~~~-~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  140 (259)
                      ||+|  +  .....+ +.+..+++++++|+||.+|++|+|+||++++++++++.+.......+ +++++.|.++.++++.
T Consensus       213 Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~  291 (409)
T 2gb3_A          213 DEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNL  291 (409)
T ss_dssp             ECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTC
T ss_pred             ECcccccccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhc
Confidence            9999  2  111222 22234679999999999999999999999994389999888776655 8899999999888862


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccee-eCCCCCeeEEEecCCCch-HHHHHHHHH--
Q 024997          141 VLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKK-IRPPSPAYAWVKCEREED-KDCYGILKA--  216 (259)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~ll~~--  216 (259)
                           ...++++.++.++++++.+.+.|++++              +.. ..+.+++++|++++..+. ++...++++  
T Consensus       292 -----~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  352 (409)
T 2gb3_A          292 -----DDSFFDFVRETYRERVETVLKKLEEHG--------------LKRFTKPSGAFYITAELPVEDAEEFARWMLTDFN  352 (409)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHTT--------------CCCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCC
T ss_pred             -----cHHHHHHHHHHHHHHHHHHHHHHHHcC--------------ceeeeCCCeeEEEEEEeCCCCHHHHHHHHHhccc
Confidence                 356788889999999999999998763              333 467789999999873334 444555544  


Q ss_pred             ---cCeeeecCCcccC----CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          217 ---AKIIGREGKKFRA----EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       217 ---~gi~~~~g~~f~~----~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                         +||.++||..|+.    +++++||+++.+++++++++++|++++++
T Consensus       353 ~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~l~~  401 (409)
T 2gb3_A          353 MDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKM  401 (409)
T ss_dssp             BTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             cccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence               4999999998864    36899999988999999999999988753

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.98  E-value=1.2e-30  Score=223.62  Aligned_cols=230  Identities=17%  Similarity=0.236  Sum_probs=186.8

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCC--CcEEEeec
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGP--YAKSIYDH   67 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~--~~~vi~De   67 (259)
                      +|+|+.|...++..|.++.      .+.+|+++|++.++++++++++++||||||.+++     ++++.+  |+++|+||
T Consensus       115 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De  194 (363)
T 3ffh_A          115 TPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDE  194 (363)
T ss_dssp             ESSCHHHHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEEC
T ss_pred             CCChHHHHHHHHHcCCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeC
Confidence            4889999999988887652      4677899999999889999999999999999983     666665  99999999


Q ss_pred             cc--cC-CCCCC---CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Q 024997           68 AY--FW-PHFAP---IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVV  141 (259)
Q Consensus        68 ~y--~~-~~~~~---~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~  141 (259)
                      +|  |. .....   .....+++++++|+||.+|++|+|+||++++ +++++.+.....  .++++++.|.++..+++  
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~--  269 (363)
T 3ffh_A          195 AYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIAD-KEIIRQLNIVRP--PFNTTSIGQKLAIEAIK--  269 (363)
T ss_dssp             TTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEEC-HHHHHHHHHTCC--SCCCBHHHHHHHHHHHH--
T ss_pred             chHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecC-HHHHHHHHHhCC--CCCCCHHHHHHHHHHhc--
Confidence            99  32 11111   1135678999999999999999999999998 799999988765  46789999999999998  


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeee
Q 024997          142 LEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIG  221 (259)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~  221 (259)
                          ..+++.+.+++++++++.+.+.|+++.+             +... +..+.|+|++++. +.+.+.+.|.++||.+
T Consensus       270 ----~~~~~~~~~~~~~~~~~~l~~~l~~~~g-------------~~~~-~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v  330 (363)
T 3ffh_A          270 ----DQAFIGECRTSNANGIKQYEAFAKRFEK-------------VKLY-PANGNFVLIDLGI-EAGTIFSYLEKNGYIT  330 (363)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHCTT-------------CEEC-CCCSSEEEEECSS-CHHHHHHHHHHTTEEC
T ss_pred             ----CHHHHHHHHHHHHHHHHHHHHHHhhCCC-------------ceEC-CCCCeEEEEECCC-CHHHHHHHHHHCCeEE
Confidence                3367888999999999999999987443             3333 4456788999976 4455555566789999


Q ss_pred             ecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          222 REGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       222 ~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      ++|..|+. ++++|||++ ++++++++++.|++++
T Consensus       331 ~~g~~~~~-~~~iRis~~-~~~~i~~~~~~l~~~l  363 (363)
T 3ffh_A          331 RSGAALGF-PTAVRITIG-KEEDNSAVIALLEKLL  363 (363)
T ss_dssp             EETTTTTC-TTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred             EeCccCCC-CCeEEEECC-CHHHHHHHHHHHHHhC
Confidence            99999876 589999996 8899999999998864

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.98  E-value=2.7e-31  Score=227.90  Aligned_cols=230  Identities=15%  Similarity=0.245  Sum_probs=188.3

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCC-CceEEEEcCCCCCChhhH--------HHhhcCC--CcEE
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSD-THLVEFVTAPNNPDGQMN--------KAVLKGP--YAKS   63 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~--------~~la~~~--~~~v   63 (259)
                      +|+|+.|...++..|.++.      .+.+|+++|++.+++ +++++++++||||||.++        .++|+++  |+++
T Consensus       116 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~l  195 (367)
T 3euc_A          116 VPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLV  195 (367)
T ss_dssp             ESCSCCSCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEE
T ss_pred             CCCHHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEE
Confidence            4899999999998888752      357889999999876 899999999999999986        2779999  9999


Q ss_pred             Eeeccc--cC-CCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q 024997           64 IYDHAY--FW-PHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKV  140 (259)
Q Consensus        64 i~De~y--~~-~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  140 (259)
                      |+||+|  |. .......+..+++++++|+||. +++|+|+||++++ +++++.+.....  .++++++.|.++..+++ 
T Consensus       196 i~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~-~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~-  270 (367)
T 3euc_A          196 VVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAGD-PQWLEQLDKVRP--PYNVNVLTEATALFALE-  270 (367)
T ss_dssp             EEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCCEEEEEEC-HHHHHHHGGGCC--SSCCCHHHHHHHHHHHT-
T ss_pred             EEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccCceeeeeC-HHHHHHHHHhCC--CCCCCHHHHHHHHHHhc-
Confidence            999999  32 1221222456789999999999 8999999999998 799998877655  36789999999999987 


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCee
Q 024997          141 VLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKII  220 (259)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~  220 (259)
                           ..+++.+.+++++++++.+.+.|+++++             +. ..+.++.|+|++++  +.+.+.+.|.++||.
T Consensus       271 -----~~~~~~~~~~~~~~~~~~l~~~l~~~~g-------------~~-~~~~~~~~~~~~~~--~~~~l~~~l~~~gi~  329 (367)
T 3euc_A          271 -----HVAVLDEQAAQLRAERSRVAEGMAAHGG-------------VT-VFPSAANFLLARVP--DAAQTFDRLLARKVL  329 (367)
T ss_dssp             -----THHHHHHHHHHHHHHHHHHHHHHHTSTT-------------CE-ECCCSSSEEEEECS--CHHHHHHHHHTTTEE
T ss_pred             -----CHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------cE-ECCCCCeEEEEECC--CHHHHHHHHHHCCeE
Confidence                 2467888899999999999999987643             33 34567889999987  455566667789999


Q ss_pred             eecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          221 GREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       221 ~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      +++|..|+. ..+++|||++ ++++++++++.|+++++
T Consensus       330 v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          330 IKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             CEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred             EEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence            999998864 4689999996 88999999999999875

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.97  E-value=6.4e-31  Score=225.45  Aligned_cols=230  Identities=18%  Similarity=0.206  Sum_probs=184.8

Q ss_pred             CCCcccchhhhhhccCcccccc------cChhhhcccCCCCceEEEEcCCCCCChhhHH-----Hhhc--CCCcEEEeec
Q 024997            1 MPFYPLYQEQTDYFESVDYKFE------GEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLK--GPYAKSIYDH   67 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~------~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~--~~~~~vi~De   67 (259)
                      +|+|+.|...++..|.++..+.      +|+++|++.++++++++++++||||||.+++     ++++  ++|+++|+||
T Consensus       113 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De  192 (365)
T 3get_A          113 GVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDA  192 (365)
T ss_dssp             SSCCTHHHHHHHHHTCEEEECSSSSCCHHHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEEC
T ss_pred             CCChHHHHHHHHHcCCEEEEEecCCCCCCCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeC
Confidence            5899999999988887653322      7888999999989999999999999999982     4554  6799999999


Q ss_pred             cc--cC---CCCCCCC-----CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Q 024997           68 AY--FW---PHFAPIP-----APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKL  137 (259)
Q Consensus        68 ~y--~~---~~~~~~~-----~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  137 (259)
                      +|  |.   .......     +..+++++++|+||.+|++|+|+||++++ +++++.+......  ++++++.|.++..+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~  269 (365)
T 3get_A          193 AYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIAN-ANIISAFYKLRAP--FNVSNLALKAAVAA  269 (365)
T ss_dssp             TTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEEC-HHHHHHHHHHSCT--TCSCHHHHHHHHHH
T ss_pred             ccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcC-HHHHHHHHHhcCC--CCcCHHHHHHHHHH
Confidence            99  21   2111111     23578999999999999999999999998 7999999887664  56899999999999


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHc
Q 024997          138 LKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAA  217 (259)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  217 (259)
                      ++      ...++++.+++++++++.+.+.|++++              +...+ ..+.|+|++++..+.+.+.+.|.++
T Consensus       270 l~------~~~~~~~~~~~~~~~~~~l~~~l~~~g--------------~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~  328 (365)
T 3get_A          270 MD------DDEFTEKTLENNFSQMELYKEFAKKHN--------------IKIID-SYTNFITYFFDEKNSTDLSEKLLKK  328 (365)
T ss_dssp             HT------CHHHHHHHHHHHHHHHHHHHHHHHHTT--------------CEECC-CSSSEEEEECSSSCHHHHHHHHHTT
T ss_pred             hC------CHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CEECC-CCCeEEEEECCCCCHHHHHHHHHHC
Confidence            88      336788899999999999999998763              33333 4466789999764445555556678


Q ss_pred             CeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          218 KIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       218 gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      ||.++||..|+  ++++|||++ ++++++++++.|+++++
T Consensus       329 gi~v~~g~~~~--~~~iRis~~-~~~~i~~l~~~l~~~l~  365 (365)
T 3get_A          329 GIIIRNLKSYG--LNAIRITIG-TSYENEKFFTEFDKILR  365 (365)
T ss_dssp             TEECEECGGGT--CSEEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECccCC--CCEEEEEcC-CHHHHHHHHHHHHHHhC
Confidence            99999999998  689999996 78999999999998763

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.97  E-value=1.2e-30  Score=221.22  Aligned_cols=227  Identities=16%  Similarity=0.148  Sum_probs=176.5

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY   69 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y   69 (259)
                      +|+|+.|...++..|.++.      ++.+|+++|++.  .+++++++++||||||.+++     ++|++++. +|+||+|
T Consensus        97 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~  173 (337)
T 3p1t_A           97 WPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQV--SRDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETY  173 (337)
T ss_dssp             SSSCSHHHHHHTTSCCEEEEECBCTTSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTT
T ss_pred             CCCcHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCC
Confidence            5899999999998887652      357788888876  56789999999999999983     78888887 5669999


Q ss_pred             --cCCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCc
Q 024997           70 --FWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGN  147 (259)
Q Consensus        70 --~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~  147 (259)
                        |...........+++++++|+||.+|++|+|+||++++ +++++.+.....  ..+++.+.|.++..+++.      .
T Consensus       174 ~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~--~~~~~~~~~~a~~~~l~~------~  244 (337)
T 3p1t_A          174 VDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGP-SELIAAMKRKQW--FCNVGTLDLHALEAALDN------D  244 (337)
T ss_dssp             GGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECC-HHHHHHHHTTSC--TTCSCHHHHHHHHHHHTC------H
T ss_pred             hhhccccccccccCCCEEEEeeCchhccCcchheEEEEeC-HHHHHHHHhhcC--CCCCCHHHHHHHHHHhCC------H
Confidence              32222222244578999999999999999999999999 799998877654  366888999988888872      2


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcc
Q 024997          148 NIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKF  227 (259)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f  227 (259)
                      ....+.++++.++++.+.+.|++++              +...++.+ .|+|+....  .+.+.+.|+++||.++||..|
T Consensus       245 ~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~-~~~~~~~~~--~~~~~~~l~~~gi~v~~g~~~  307 (337)
T 3p1t_A          245 RAREAHIAKTLAQRRRVADALRGLG--------------YRVASSEA-NFVLVENAA--GERTLRFLRERGIQVKDAGQF  307 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT--------------CCBCCCSS-SEEEEECTT--THHHHHHHHHTTEECEEGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCc--------------CEECCCCC-eEEEEEcCC--HHHHHHHHHHCCeEEEECccC
Confidence            3566677788888899999998763              33334444 455666543  355667778899999999999


Q ss_pred             cCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          228 RAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       228 ~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +. ++++|||++ ++++++.+++.|+++.++
T Consensus       308 ~~-~~~iRis~~-~~~~~~~l~~al~~~~~~  336 (337)
T 3p1t_A          308 GL-HHHIRISIG-REEDNDRLLAALAEYSDH  336 (337)
T ss_dssp             TC-CSEEEEECC-CHHHHHHHHHHHHHHTC-
T ss_pred             CC-CCeEEEecC-CHHHHHHHHHHHHHHhhc
Confidence            76 489999996 688899999999888754

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.97  E-value=3.4e-31  Score=232.13  Aligned_cols=239  Identities=14%  Similarity=0.088  Sum_probs=184.1

Q ss_pred             CCCcccchhhhhh-ccCccc-------ccccChhhhcccCCC---CceEEEEcCCCCCChhhHH--------HhhcC---
Q 024997            1 MPFYPLYQEQTDY-FESVDY-------KFEGEANLWGNASSD---THLVEFVTAPNNPDGQMNK--------AVLKG---   58 (259)
Q Consensus         1 ~P~y~~~~~~~~~-~g~~~~-------~~~~d~~~l~~~~~~---~~~~i~i~~p~NPtG~~~~--------~la~~---   58 (259)
                      +|+|+.|...++. .|.++.       .|.+|+++|++.+++   +++++++++||||||.+++        ++|++   
T Consensus       144 ~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~  223 (430)
T 2x5f_A          144 EHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALAN  223 (430)
T ss_dssp             SSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhh
Confidence            5899999999988 877652       256888889888854   7899999999999999872        78889   


Q ss_pred             --CCcEEEeeccc--c--CCC-CCCC----CCCCCC---eEEEeccccccCCCcceEEEEEe---cCHHHHHHHHHhhhh
Q 024997           59 --PYAKSIYDHAY--F--WPH-FAPI----PAPADE---ELMIFTISKLTGHAGSRFGWAVI---KDEAVYQRMSAYISL  121 (259)
Q Consensus        59 --~~~~vi~De~y--~--~~~-~~~~----~~~~~~---~i~~~S~SK~~g~~G~R~G~i~~---~~~~~~~~~~~~~~~  121 (259)
                        +|+++|+||+|  |  ... ..++    .+..++   +++++|+||.+|++|+|+||+++   + +++++.+......
T Consensus       224 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~-~~~~~~l~~~~~~  302 (430)
T 2x5f_A          224 KGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSD-QTTKEVLEAKVKG  302 (430)
T ss_dssp             TTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCC-HHHHHHHHHHHHH
T ss_pred             ccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCC-HHHHHHHHHHHhh
Confidence              99999999999  2  111 1222    123567   89999999999999999999999   7 7999998876655


Q ss_pred             ----hcCCCCHHHHHHHHHHHH-HHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCe
Q 024997          122 ----NTMGVSRECQLRAFKLLK-VVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPA  196 (259)
Q Consensus       122 ----~~~~~~~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (259)
                          .+.+++++.|.++.++++ ..   ...+.+.+.+++++++++.+.+.|++..       .+.   .+....+++|+
T Consensus       303 ~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~-------~~~---g~~~~~~~~g~  369 (430)
T 2x5f_A          303 LIRSNISSGPLPTQSAVKHVLKNNK---QFDKEIEQNIQTLKERYEVTKEVVYADQ-------YHS---HWQAYDFNSGY  369 (430)
T ss_dssp             HHHTTTSSCCHHHHHHHHHHHHSCH---HHHHHHHHHHHHHHHHHHHHHHHHTCGG-------GTT---TEEECCCCBSS
T ss_pred             hhhcccCCCChHHHHHHHHHHccCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhC-------CCC---CceeeCCCceE
Confidence                567899999999999987 52   0122344488889999999998887321       000   04556788899


Q ss_pred             eEEEecCCCch-HHHHHHHHHcCeeeecCCcccCCCCeEEEEee-cChhhHHHHHHHHHHHhhh
Q 024997          197 YAWVKCEREED-KDCYGILKAAKIIGREGKKFRAEARFVRLSLL-KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       197 ~~~~~~~~~~~-~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~-~~~~~~~~~~~~l~~~l~~  258 (259)
                      |+|++++..+. ++...+++++||.++||     +++++|||++ .+++++++++++|++++++
T Consensus       370 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g-----~~~~iRis~~~~~~e~i~~~~~~l~~~l~~  428 (430)
T 2x5f_A          370 FMAIKVHDVDPEALRKHLIDKYSIGVIAL-----NATDIRIAFSCVEKDDIPHVFDSIAKAIDD  428 (430)
T ss_dssp             EEEEEESSSCHHHHHHHHHHHHCEECEEC-----SSSEEEEEGGGSCGGGHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHhCCEEEecC-----CCCeEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            99999874344 44555554489999997     3579999998 5889999999999998763

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.97  E-value=1.3e-30  Score=222.62  Aligned_cols=230  Identities=17%  Similarity=0.198  Sum_probs=184.3

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCC--CCceEEEEcCCCCCChhhHH-----Hhhc--CCCcEEEe
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASS--DTHLVEFVTAPNNPDGQMNK-----AVLK--GPYAKSIY   65 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~--~~~~~i~i~~p~NPtG~~~~-----~la~--~~~~~vi~   65 (259)
                      +|+|+.|...++..|.++.      .+.+|+++|++.++  ++++++++++||||||.+++     ++++  ++|+++|+
T Consensus        99 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~  178 (354)
T 3ly1_A           99 ELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIV  178 (354)
T ss_dssp             SSSCTHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEE
T ss_pred             CCCchHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEE
Confidence            5899999999998887652      46778999999986  78999999999999999872     4444  49999999


Q ss_pred             eccc--c--CCCCCCCC---CCC-CCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Q 024997           66 DHAY--F--WPHFAPIP---APA-DEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKL  137 (259)
Q Consensus        66 De~y--~--~~~~~~~~---~~~-~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  137 (259)
                      ||+|  |  .....+..   ... +++++++|+||.+|++|+|+||++++ +++++.+......  ++++++.|.++..+
T Consensus       179 De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~~--~~~~~~~~~a~~~~  255 (354)
T 3ly1_A          179 DEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAH-PTVIALMGRYVAG--EKINFSGVDAALAS  255 (354)
T ss_dssp             ECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECC-HHHHHHHGGGTTC--SCCCHHHHHHHHHH
T ss_pred             eccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecC-HHHHHHHHHhcCC--CCCCHHHHHHHHHH
Confidence            9999  2  22111211   233 78999999999999999999999998 7999999887765  68899999999999


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHc
Q 024997          138 LKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAA  217 (259)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  217 (259)
                      ++.      ..++.+.+++++++++.+.+.|++++              +... +..|.|+|++++. +.+.+.+.|.++
T Consensus       256 l~~------~~~~~~~~~~~~~~~~~l~~~l~~~~--------------~~~~-~~~~~~~~~~~~~-~~~~~~~~l~~~  313 (354)
T 3ly1_A          256 MND------SAFITYSKKSNDVSRQILLKALEDLK--------------LPYL-PSEGNFVFHQLVV-PLKDYQTHMADA  313 (354)
T ss_dssp             TTC------HHHHHHHHHHHHHHHHHHHHHHHHHT--------------CCBC-CCCSSEEEEECSS-CHHHHHHHHHHT
T ss_pred             hcC------HHHHHHHHHHHHHHHHHHHHHHHHCC--------------CeEC-CCCceEEEEECCC-CHHHHHHHHHHC
Confidence            873      36788899999999999999998763              3333 4457789999976 445555556678


Q ss_pred             CeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          218 KIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       218 gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ||.++ |..++ .++++|||++ +++++++++++|++++++
T Consensus       314 gi~v~-g~~~~-~~~~iRis~~-~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          314 GVLIG-RAFPP-ADNWCRISLG-TPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             TEECC-CCCTT-CTTEEEEECC-CHHHHHHHHHHHHHHHHT
T ss_pred             CEEEe-ecCCC-CCCEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence            99998 66444 5689999996 789999999999999876

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.97  E-value=2e-31  Score=231.30  Aligned_cols=238  Identities=14%  Similarity=0.158  Sum_probs=186.8

Q ss_pred             CCCcccchhhhhhccCccccc-----ccChhhhcccCCC-CceEE-EEcCCCCCChhhHH--------HhhcCCCcEEEe
Q 024997            1 MPFYPLYQEQTDYFESVDYKF-----EGEANLWGNASSD-THLVE-FVTAPNNPDGQMNK--------AVLKGPYAKSIY   65 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~-----~~d~~~l~~~~~~-~~~~i-~i~~p~NPtG~~~~--------~la~~~~~~vi~   65 (259)
                      +|+|+.|...++..|.++..+     .+|+++|++.+++ +++++ ++++||||||.+++        ++|+++|+++|+
T Consensus       122 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~  201 (397)
T 2zyj_A          122 APSYMGAIQAFRLQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVE  201 (397)
T ss_dssp             ESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEE
T ss_pred             CCCcHHHHHHHHHcCCEEEecCcCCCCCCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence            489999999988888766332     3688889888854 67776 57999999999872        788999999999


Q ss_pred             eccc--cC--CC-CCCCC--CCC---CCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 024997           66 DHAY--FW--PH-FAPIP--APA---DEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAF  135 (259)
Q Consensus        66 De~y--~~--~~-~~~~~--~~~---~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~  135 (259)
                      ||+|  +.  .. ..++.  +..   +++++++|+||.+| +|+|+||++++ +++++.+.........+++++.|.++.
T Consensus       202 De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~  279 (397)
T 2zyj_A          202 DDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAH-PEALQKLVQAKQGADLHTPMLNQMLVH  279 (397)
T ss_dssp             ECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred             eCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            9999  21  11 11221  122   67899999999999 99999999999 799999988777667788999999998


Q ss_pred             HHHHHHHhcCCc-chHHHHHHHHHHHHHHHHHHHHhc-C-CCccccccccccccceeeCCCCCeeEEEecCC-CchHHHH
Q 024997          136 KLLKVVLEDGGN-NIFEFGYNTMKKRWENLSKIISLS-N-RFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-EEDKDCY  211 (259)
Q Consensus       136 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  211 (259)
                      ++++.     .. +++++.++.++++++.+.+.|++. + +             +....+.+|+++|++++. .+.+.+.
T Consensus       280 ~~l~~-----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g-------------~~~~~~~~g~~~~~~~~~~~~~~~~~  341 (397)
T 2zyj_A          280 ELLKE-----GFSERLERVRRVYREKAQAMLHALDREVPKE-------------VRYTRPKGGMFVWMELPKGLSAEGLF  341 (397)
T ss_dssp             HHHTT-----THHHHHHHHHHHHHHHHHHHHHHHHHHSCTT-------------SEECCCSBSSEEEEECSTTCCHHHHH
T ss_pred             HHHHh-----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------eEEccCCccEEEEEEcCCCCCHHHHH
Confidence            88873     22 567888889999999999999863 3 1             344567789999999974 2344444


Q ss_pred             HHHHHcCeeeecCCcccC---CCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          212 GILKAAKIIGREGKKFRA---EARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       212 ~ll~~~gi~~~~g~~f~~---~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      +.|.++||.++||..|+.   +++++|||++. +++++++++++|.+++++
T Consensus       342 ~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~  392 (397)
T 2zyj_A          342 RRALEENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRALKG  392 (397)
T ss_dssp             HHHHHTTEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence            455567999999998863   46899999987 789999999999988753

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.97  E-value=5.8e-31  Score=228.69  Aligned_cols=236  Identities=21%  Similarity=0.198  Sum_probs=175.7

Q ss_pred             CCCcccchhhhhhccCc-ccccccChh-hhcccCC--CCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESV-DYKFEGEAN-LWGNASS--DTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~-~~~~~~d~~-~l~~~~~--~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~De~   68 (259)
                      +|+|+.|...++..|.+ +..+..+.+ .+...+.  ++++++++++||||||.+++        ++|+++|+++|+||+
T Consensus       125 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~  204 (400)
T 3asa_A          125 DPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAA  204 (400)
T ss_dssp             ESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred             CCCcHHHHHHHHHcCCcceEecccchhcCcccChhhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEch
Confidence            48999999988888877 544433321 1111121  56889899999999999872        678999999999999


Q ss_pred             c--cC--CC-CCCCCC---CCCCeEEEeccccccCCCcceEEEEEecCHHH-------HHHHHHhhhhh-cCCCCHHHHH
Q 024997           69 Y--FW--PH-FAPIPA---PADEELMIFTISKLTGHAGSRFGWAVIKDEAV-------YQRMSAYISLN-TMGVSRECQL  132 (259)
Q Consensus        69 y--~~--~~-~~~~~~---~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~-------~~~~~~~~~~~-~~~~~~~~q~  132 (259)
                      |  |.  +. ...+..   ..+++++++|+||.+|++|+|+||++++ +++       ++.+....... ..+++++.|.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (400)
T 3asa_A          205 YSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIP-QELTYADGHFVIQDWERFLSTTFNGASIPAQE  283 (400)
T ss_dssp             TGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECC-TTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHH
T ss_pred             hhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeC-hhhccchhhhHHHHHHHHhccCccCCChHHHH
Confidence            9  31  21 112221   2357899999999999999999999998 477       56654433222 3468999999


Q ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEe-cCCC-c-hHH
Q 024997          133 RAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVK-CERE-E-DKD  209 (259)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~~  209 (259)
                      ++..+++.     .  ++++.++.++++++.+.+.|++++              +....+.+++|+|++ ++.. + .++
T Consensus       284 a~~~~l~~-----~--~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (400)
T 3asa_A          284 AGVAGLSI-----L--PQLEAIHYYRENSDLLRKALLATG--------------FEVFGGEHAPYLWVKPTQANISDRDL  342 (400)
T ss_dssp             HHHHHHHH-----T--TTCHHHHHHHHHHHHHHHHHHHTT--------------CEEEECSSSSEEEEECCCTTCCTTTH
T ss_pred             HHHHHhCc-----H--HHHHHHHHHHHHHHHHHHHHHHCC--------------CeeeCCCCceEEEEeccCCCCCHHHH
Confidence            99988884     2  567788999999999999998753              444566788999999 7642 2 466


Q ss_pred             HHHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          210 CYGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       210 ~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ...+++++||.++||..|+. +++++|||+..+++++++++++|++++++
T Consensus       343 ~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~  392 (400)
T 3asa_A          343 FDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERLQMAPAL  392 (400)
T ss_dssp             HHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCHHHHHHHHHHHHC----
T ss_pred             HHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCHHHHHHHHHHHHHHHHh
Confidence            77777778999999999874 46899999766999999999999988753

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.97  E-value=5.4e-31  Score=229.98  Aligned_cols=235  Identities=12%  Similarity=0.070  Sum_probs=178.5

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCC----Cce-EEEEcCC-CCCChhhHH--------Hhhc--
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSD----THL-VEFVTAP-NNPDGQMNK--------AVLK--   57 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~----~~~-~i~i~~p-~NPtG~~~~--------~la~--   57 (259)
                      +|+|+.|...++..|.++.       .|.+|++.|++.+++    +++ ++++++| |||||.+++        ++|+  
T Consensus       133 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~  212 (418)
T 3rq1_A          133 DWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDL  212 (418)
T ss_dssp             SSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence            5899999999999888652       247788889888853    454 8899999 999999983        5666  


Q ss_pred             ----CCCcEEEeeccc--cCCC---CCC----CCCCCCC--eEEEeccccccCCCcceEEEEEe---cCHHHHHHHHHhh
Q 024997           58 ----GPYAKSIYDHAY--FWPH---FAP----IPAPADE--ELMIFTISKLTGHAGSRFGWAVI---KDEAVYQRMSAYI  119 (259)
Q Consensus        58 ----~~~~~vi~De~y--~~~~---~~~----~~~~~~~--~i~~~S~SK~~g~~G~R~G~i~~---~~~~~~~~~~~~~  119 (259)
                          ++|+++|+||+|  |...   ..+    ..+..++  +++++||||.+|++|+|+||+++   + +++++.+....
T Consensus       213 ~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~-~~~~~~~~~~~  291 (418)
T 3rq1_A          213 VAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDD-EEIADEFFEVN  291 (418)
T ss_dssp             HHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESS-HHHHHHHHHHH
T ss_pred             hhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCC-HHHHHHHHHHH
Confidence                999999999999  3211   111    1233445  58899999999999999999998   6 79999888765


Q ss_pred             hhh----cCCCCHHHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCC
Q 024997          120 SLN----TMGVSRECQLRAFKLLKVVLE-DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPS  194 (259)
Q Consensus       120 ~~~----~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (259)
                      ...    ..+++.+.|.++..+++.... +.......+.++.++++++.+.+.|++++              +.+..+++
T Consensus       292 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~  357 (418)
T 3rq1_A          292 KSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVG--------------LPMLPYRG  357 (418)
T ss_dssp             HHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------CCCCCCCS
T ss_pred             HHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CCCCCCCc
Confidence            432    246889999998888863100 00112334567788899999999888763              44567889


Q ss_pred             CeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          195 PAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      ++|+|+++.  +.+.+.+.|.++||.++||      ++++|||++. +++++++++++|++++++
T Consensus       358 ~~~~~~~~~--~~~~~~~~l~~~gi~v~~g------~~~iRis~~~~~~~~i~~~~~~l~~~l~~  414 (418)
T 3rq1_A          358 GFFITIPTD--SANAICEELKKEHIYVIAL------ANGIRIAACGIPKCQMTGLAEKIYNAMKS  414 (418)
T ss_dssp             SSEEEEECT--THHHHHHHHHHTTEECEEC------SSEEEEEGGGSCHHHHTTHHHHHHHHHHH
T ss_pred             eEEEEcCCC--CHHHHHHHHHhCCEEEecC------CCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            999999885  3444556778899999996      3689999986 999999999999998864

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.97  E-value=1.2e-30  Score=229.45  Aligned_cols=242  Identities=17%  Similarity=0.192  Sum_probs=184.5

Q ss_pred             CCCcccchhhh------hhccCccc-----------ccccChhhhccc---CCCCceEEEEcCCCCCChhhHH-------
Q 024997            1 MPFYPLYQEQT------DYFESVDY-----------KFEGEANLWGNA---SSDTHLVEFVTAPNNPDGQMNK-------   53 (259)
Q Consensus         1 ~P~y~~~~~~~------~~~g~~~~-----------~~~~d~~~l~~~---~~~~~~~i~i~~p~NPtG~~~~-------   53 (259)
                      +|+|+.|...+      ...|..+.           .|.+|+++|++.   ++++++++++++||||||.+++       
T Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i  231 (444)
T 3if2_A          152 TPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHL  231 (444)
T ss_dssp             SSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             CCCccchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHH
Confidence            47888887743      22333321           256899999988   6788999999999999999872       


Q ss_pred             -HhhcCCCcEEEeecccc--CCC--CCCC-CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCC
Q 024997           54 -AVLKGPYAKSIYDHAYF--WPH--FAPI-PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVS  127 (259)
Q Consensus        54 -~la~~~~~~vi~De~y~--~~~--~~~~-~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~  127 (259)
                       ++|+++|+++|+||+|-  .+.  +... ....+++++++|+||+ +++|+|+||++++ +++++.+.......+.+++
T Consensus       232 ~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~-~~l~~~~~~~~~~~~~~~~  309 (444)
T 3if2_A          232 AEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLPGMRTGIIVAD-AKVIEAVSAMNAVVNLAPT  309 (444)
T ss_dssp             HHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCGGGCCEEEECC-HHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc-cCCCCceEEEEEC-HHHHHHHHHHHHhccCCCC
Confidence             78999999999999992  111  1111 1345789999999997 7899999999998 7999999988887778899


Q ss_pred             HHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHHHHHHHh-cCCCccccccccccccceeeCCCCCeeEEEecCC-
Q 024997          128 RECQLRAFKLLKVVLEDGGNNIFEF-GYNTMKKRWENLSKIISL-SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-  204 (259)
Q Consensus       128 ~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  204 (259)
                      ++.|.++..+++..   ....+..+ .++.++++++.+.+.|++ ++.+.           +....+.+|+++|++++. 
T Consensus       310 ~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----------~~~~~~~~g~~~~~~~~~~  375 (444)
T 3if2_A          310 RFGAAIATPLVAND---RIKQLSDNEIKPFYQKQATLAVKLLKQALGDYP-----------LMIHKPEGAIFLWLWFKDL  375 (444)
T ss_dssp             CHHHHHHHHHHHTS---HHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSS-----------EEEECCCBSSEEEEEETTC
T ss_pred             hHHHHHHHHHHHcC---chhHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-----------ceEecCCccEEEEEEcCCC
Confidence            99999999998841   11122333 566788888888888875 33211           345578889999999875 


Q ss_pred             -CchHHHHHHHHHcCeeeecCCcccCC---------CCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          205 -EEDKDCYGILKAAKIIGREGKKFRAE---------ARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       205 -~~~~~~~~ll~~~gi~~~~g~~f~~~---------~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                       .+.+.+...|.++||.++||+.|..+         .+++|||++.+++++++++++|.+++++
T Consensus       376 ~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~  439 (444)
T 3if2_A          376 PISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVVRE  439 (444)
T ss_dssp             SSCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence             34555566667899999999998642         2689999988999999999999988753

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.97  E-value=3e-31  Score=231.03  Aligned_cols=235  Identities=11%  Similarity=-0.013  Sum_probs=180.4

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCC---CCceEEEEcCCCCCChhhHH--------HhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASS---DTHLVEFVTAPNNPDGQMNK--------AVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~~--------~la~~~~~   61 (259)
                      +|+|+.|...++..|.++.        ++.+|+++|++.++   +.++++++++||||||.+++        ++|+++|+
T Consensus       138 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~  217 (409)
T 4eu1_A          138 DVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNH  217 (409)
T ss_dssp             SSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred             CCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCc
Confidence            5999999999999988652        35778899998883   46778788999999999982        78999999


Q ss_pred             EEEeeccc--c--CC---CCCCC---CCCCCCeEEEeccccccCCCcceEEEE--EecCHH----HHHHHHHhhhhhcCC
Q 024997           62 KSIYDHAY--F--WP---HFAPI---PAPADEELMIFTISKLTGHAGSRFGWA--VIKDEA----VYQRMSAYISLNTMG  125 (259)
Q Consensus        62 ~vi~De~y--~--~~---~~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i--~~~~~~----~~~~~~~~~~~~~~~  125 (259)
                      ++|+||+|  |  .+   ...++   .+..+++++++||||++|++|+|+||+  ++++++    +++.+.........+
T Consensus       218 ~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~  297 (409)
T 4eu1_A          218 IPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNN  297 (409)
T ss_dssp             EEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSS
T ss_pred             EEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCC
Confidence            99999999  2  11   01111   144577999999999999999999997  555467    677777666666778


Q ss_pred             CCHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC
Q 024997          126 VSRECQLRAFKLLKVVL-EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER  204 (259)
Q Consensus       126 ~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (259)
                      ++.+.|.++..+++... ......++.+.+++++++++.+.+.|++++.      +.    .+....+++++|+|++++ 
T Consensus       298 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~------~~----~~~~~~~~~~~~~~~~~~-  366 (409)
T 4eu1_A          298 PPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGS------VH----DWSHIERQVGMMAYTGLT-  366 (409)
T ss_dssp             CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------CS----CCHHHHHSCSSEEECCCC-
T ss_pred             CChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC----CcceecCCceEEEEeCCC-
Confidence            88999999999887310 0001345778889999999999999987641      00    023346789999997764 


Q ss_pred             CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHhh
Q 024997          205 EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       205 ~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l~  257 (259)
                        .+.+..+++++||.+.||         .||+++. +++++++++++|+++++
T Consensus       367 --~~~~~~ll~~~gv~v~p~---------~Ri~~~~~~~~~i~~~~~~l~~~l~  409 (409)
T 4eu1_A          367 --REQVELLRSEYHIYMTLN---------GRAAVSGLNSTNVEYVSQAIHNVTK  409 (409)
T ss_dssp             --HHHHHHHHHHHCEECCTT---------CEEEGGGCCTTTHHHHHHHHHHHHC
T ss_pred             --HHHHHHHHHcCCEEEcCC---------CEEEEEecCHhhHHHHHHHHHHHhC
Confidence              567888888899999984         3999986 88889999999998763

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.97  E-value=1.6e-30  Score=226.04  Aligned_cols=240  Identities=15%  Similarity=0.144  Sum_probs=186.3

Q ss_pred             CCCcccchhhhhhccCccccc-----ccChhhhcccCC----C--CceEE-EEcCCCCCChhhH--------HHhhcCCC
Q 024997            1 MPFYPLYQEQTDYFESVDYKF-----EGEANLWGNASS----D--THLVE-FVTAPNNPDGQMN--------KAVLKGPY   60 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~-----~~d~~~l~~~~~----~--~~~~i-~i~~p~NPtG~~~--------~~la~~~~   60 (259)
                      +|+|+.+...++..|.++..+     .+|+++|++.++    +  ++++| ++++||||||.++        .++|+++|
T Consensus       129 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~  208 (407)
T 2zc0_A          129 NPSYINTLLAFEQLGAKIEGVPVDNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYD  208 (407)
T ss_dssp             ESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             CCChHHHHHHHHHcCCEEEEcccCCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence            488999998888888765332     367888988876    5  77876 5789999999976        27899999


Q ss_pred             cEEEeeccc--c--CC-CCCCCC--CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHH
Q 024997           61 AKSIYDHAY--F--WP-HFAPIP--APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLR  133 (259)
Q Consensus        61 ~~vi~De~y--~--~~-~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~  133 (259)
                      +++|+||+|  +  .. ...++.  +..+++++++|+||.++ +|+|+||++++ +++++.+.......+.+++++.|.+
T Consensus       209 ~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  286 (407)
T 2zc0_A          209 LLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFRIGWIIAE-GEILKKVLMQKQPIDFCAPAISQYI  286 (407)
T ss_dssp             CEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSCCEEEECC-HHHHHHHHHHHTTTTSSSCHHHHHH
T ss_pred             CEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-CCcceEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHH
Confidence            999999999  2  11 112221  23357899999999999 99999999999 7999999887776677789999999


Q ss_pred             HHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHHHHHhc-CCCccccccccccccceeeCCCCCeeEEEecCC-Cch-HH
Q 024997          134 AFKLLKVVLEDGGN-NIFEFGYNTMKKRWENLSKIISLS-NRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-EED-KD  209 (259)
Q Consensus       134 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~  209 (259)
                      +..+++..   ..+ .++++.++.++++++.+.+.|++. ++             +....+.+++++|++++. .+. ++
T Consensus       287 ~~~~l~~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l  350 (407)
T 2zc0_A          287 ALEYLKRG---YFEKYHLEGALLGYKEKRDIMLKALENHLPN-------------AEFTKPIAGMFVMFFLPEGADGISF  350 (407)
T ss_dssp             HHHHHHTT---HHHHHTTTTHHHHHHHHHHHHHHHHHHHCTT-------------SCBCCCSBSSEEEEECSTTCCHHHH
T ss_pred             HHHHHHcC---CchHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CEEecCCCcEEEEEEcCCCCCHHHH
Confidence            99998731   013 466778888999999999999863 32             333456788999999964 233 45


Q ss_pred             HHHHHHHcCeeeecCCcccC---CCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          210 CYGILKAAKIIGREGKKFRA---EARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       210 ~~~ll~~~gi~~~~g~~f~~---~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      ...+++++||.++||..|..   +.+++|||++. +++++++++++|++++++
T Consensus       351 ~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~  403 (407)
T 2zc0_A          351 ANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKE  403 (407)
T ss_dssp             HHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            55555544999999998874   36899999987 799999999999988753

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.97  E-value=2.5e-30  Score=221.20  Aligned_cols=231  Identities=18%  Similarity=0.208  Sum_probs=179.0

Q ss_pred             CCCcccchhhhhhccCccccc------ccChhhhcccCCCCceEEEEcCCCCCChhhH--------HHhhcCCCcEEEee
Q 024997            1 MPFYPLYQEQTDYFESVDYKF------EGEANLWGNASSDTHLVEFVTAPNNPDGQMN--------KAVLKGPYAKSIYD   66 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~------~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~~vi~D   66 (259)
                      +|+|+.|...++..|.++..+      .+++++|++.+++ ++++++++||||||.++        .++|+++|+++|+|
T Consensus       105 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D  183 (361)
T 3ftb_A          105 VPSYAEYEINAKKHGVSVVFSYLDENMCIDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIID  183 (361)
T ss_dssp             ESCCTHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             cCChHHHHHHHHHcCCeEEEeecCcccCCCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEE
Confidence            489999999999888876332      4555789988877 99999999999999987        27788999999999


Q ss_pred             ccc--cCC----CCCCCCCCCCCeEEEeccccccCCCcceEEEEE-ecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q 024997           67 HAY--FWP----HFAPIPAPADEELMIFTISKLTGHAGSRFGWAV-IKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLK  139 (259)
Q Consensus        67 e~y--~~~----~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~-~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~  139 (259)
                      |+|  |..    .........+++++++|+||.+|++|+|+||++ .+ +++++.+......  ++++++.|.++.++++
T Consensus       184 e~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~  260 (361)
T 3ftb_A          184 EAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNN-KEIAAKIKAKQNP--WNINCFAEMAAINCLK  260 (361)
T ss_dssp             CSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESC-HHHHHHHHTTSCT--TCSCHHHHHHHHHTSS
T ss_pred             CcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCC-HHHHHHHHhhCCC--CCCCHHHHHHHHHHhc
Confidence            999  321    111222456789999999999999999999999 66 7999998876653  5788999999988887


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccce-eeCCCCCeeEEEecCCCchHHHHHHHHHcC
Q 024997          140 VVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFK-KIRPPSPAYAWVKCEREEDKDCYGILKAAK  218 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g  218 (259)
                            ..+++++.+++++++++.+.+.|+++++             +. ..+ ..|.++|++++..+.+.+.+.|.++|
T Consensus       261 ------~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------------~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~g  320 (361)
T 3ftb_A          261 ------DTNYIEESLLWIKKERKRFIEELNKIGF-------------IKRVFS-PHANFVLCRLENISGEKLYDSLLKED  320 (361)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHSSS-------------EEEEEC-CSSSEEEEEESSSCHHHHHHHHHTTT
T ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CceecC-CCCeEEEEEcCCCCHHHHHHHHHHCC
Confidence                  3467888999999999999999998754             33 334 44667888887644445555555679


Q ss_pred             eeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          219 IIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       219 i~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      |.++||..|+. +++++|||++ ++++++++++.|+++.
T Consensus       321 i~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~  358 (361)
T 3ftb_A          321 IVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRALKGVE  358 (361)
T ss_dssp             EECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred             eEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHH
Confidence            99999999975 4789999996 5555555555555554

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.97  E-value=2.5e-30  Score=224.59  Aligned_cols=235  Identities=12%  Similarity=0.048  Sum_probs=177.1

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccC---CCCceEEEEcCCCCCChhhH--------HHhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNAS---SDTHLVEFVTAPNNPDGQMN--------KAVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~---~~~~~~i~i~~p~NPtG~~~--------~~la~~~~~   61 (259)
                      +|+|+.|...++..|.++.        .+.+|++.+++.+   +++++++++++||||||.++        .++|+++|+
T Consensus       130 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~  209 (401)
T 7aat_A          130 KPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNL  209 (401)
T ss_dssp             ESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred             CCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCc
Confidence            4899999999999988652        4677777444443   56789999999999999887        278999999


Q ss_pred             EEEeeccc--c--CCC---CCCC---CCCCCCeEEEeccccccCCCcceEEEEEe--cCHH----HHHHHHHhhhhhcCC
Q 024997           62 KSIYDHAY--F--WPH---FAPI---PAPADEELMIFTISKLTGHAGSRFGWAVI--KDEA----VYQRMSAYISLNTMG  125 (259)
Q Consensus        62 ~vi~De~y--~--~~~---~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i~~--~~~~----~~~~~~~~~~~~~~~  125 (259)
                      ++|+||+|  |  .+.   ..++   ....+++++++|+||.||++|+|+||+++  .+++    +.+.+.........+
T Consensus       210 ~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (401)
T 7aat_A          210 LAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSN  289 (401)
T ss_dssp             EEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSS
T ss_pred             EEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCC
Confidence            99999999  2  111   1111   13567899999999999999999999987  2255    556666666666778


Q ss_pred             CCHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC
Q 024997          126 VSRECQLRAFKLLKVVL-EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER  204 (259)
Q Consensus       126 ~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (259)
                      ++...|.++..+++... .....+++.+.+++++++++.+.+.|++++.      ++    .+....+++++|+|++++ 
T Consensus       290 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~------~~----~~~~~~~~~~~~~~~~~~-  358 (401)
T 7aat_A          290 PPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGS------SH----NWQHITDQIGMFCFTGLK-  358 (401)
T ss_dssp             CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------CS----CCHHHHHCCSSEEECCCC-
T ss_pred             CChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC----CCceecCCcceEEecCCC-
Confidence            88888888887776210 0000356778889999999999999987531      00    033457889999998774 


Q ss_pred             CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHhh
Q 024997          205 EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       205 ~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l~  257 (259)
                        .+.+..+++++||.+.|+         +|||++. +.+++++++++|+++++
T Consensus       359 --~~~~~~ll~~~gi~v~~~---------~Ris~~~~~~~~i~~~~~~l~~~~~  401 (401)
T 7aat_A          359 --PEQVERLTKEFSIYMTKD---------GRISVAGVASSNVGYLAHAIHQVTK  401 (401)
T ss_dssp             --HHHHHHHHHHHCEECCTT---------CEEEGGGCCTTTHHHHHHHHHHHHC
T ss_pred             --HHHHHHHHHhCCEeccCC---------CeEEeccCChhhHHHHHHHHHHHhC
Confidence              667788888899999763         6999986 77779999999998763

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.95  E-value=5.1e-33  Score=240.99  Aligned_cols=240  Identities=14%  Similarity=0.189  Sum_probs=189.1

Q ss_pred             CCCcccchhhhhhccCccc---------ccccChhhhcccCC-CCceEEEEcCCCCCChhhHH--------HhhcCCCcE
Q 024997            1 MPFYPLYQEQTDYFESVDY---------KFEGEANLWGNASS-DTHLVEFVTAPNNPDGQMNK--------AVLKGPYAK   62 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~---------~~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~   62 (259)
                      +|+|+.|...++..|.++.         .|.+|++.|++.++ ++++++++++||||||.+++        ++|+++|++
T Consensus       120 ~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~  199 (392)
T 3b1d_A          120 SPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVI  199 (392)
Confidence            4889999988888777652         24478888998886 67888899999999999973        788999999


Q ss_pred             EEeeccc--c--CC-CCCCCC--C--CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhc-CCCCHHHHH
Q 024997           63 SIYDHAY--F--WP-HFAPIP--A--PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNT-MGVSRECQL  132 (259)
Q Consensus        63 vi~De~y--~--~~-~~~~~~--~--~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~-~~~~~~~q~  132 (259)
                      +|+||+|  |  .. ...++.  .  ..+++++++|+||.+|++|+|+||++++++++++.+.......+ .+++++.|.
T Consensus       200 li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (392)
T 3b1d_A          200 LVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYI  279 (392)
Confidence            9999999  3  11 122222  1  15679999999999999999999999974459998887766543 356888999


Q ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh-cCCCccccccccccccceeeCCCCCeeEEEecCCC--c-hH
Q 024997          133 RAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISL-SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--E-DK  208 (259)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~  208 (259)
                      ++.++++.     .++++.+.++.++++++.+.+.|++ +++             +....+.+++++|++++..  + .+
T Consensus       280 a~~~~l~~-----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------------~~~~~~~~~~~~~i~~~~~~~~~~~  341 (392)
T 3b1d_A          280 ATETAYRY-----GKPWLVALKAVLEENIQFAVEYFAQEAPR-------------LKVMKPQGTYLIWLDFSDYGLTDDA  341 (392)
Confidence            88888873     3567888889999999999998876 443             4456788999999988752  3 34


Q ss_pred             HHHHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          209 DCYGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       209 ~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +...+++++||.++||..|+. +++++||+++.+++++++++++|++++++
T Consensus       342 l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~e~i~~~l~~l~~~l~~  392 (392)
T 3b1d_A          342 LFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKSLVEEICKRIVCCLPK  392 (392)
Confidence            455555678999999999974 46899999988889999999999988753

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.97  E-value=6.7e-30  Score=219.19  Aligned_cols=232  Identities=19%  Similarity=0.260  Sum_probs=176.5

Q ss_pred             CCCcccchhhhhhccCcccccccC-------hhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEe
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEGE-------ANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIY   65 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~d-------~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~   65 (259)
                      +|+|+.|...++..|.++..+..+       ++++.+.++++++++++++||||||.+++        ++|+++|+++|+
T Consensus       105 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~  184 (364)
T 1lc5_A          105 TPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLIL  184 (364)
T ss_dssp             ESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCcHHHHHHHHHcCCeEEEEeCCcccccchhHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEE
Confidence            489999999999888776433332       24344455677888899999999999872        789999999999


Q ss_pred             eccc--cCC---CCCCCCCCCCCeEEEeccccccCCCcceEEEEE-ecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q 024997           66 DHAY--FWP---HFAPIPAPADEELMIFTISKLTGHAGSRFGWAV-IKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLK  139 (259)
Q Consensus        66 De~y--~~~---~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~-~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~  139 (259)
                      ||+|  |..   ......+..+++++++|+||.+|++|+|+||++ ++ +++++.+.....  .++++++.|.++.++++
T Consensus       185 De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~  261 (364)
T 1lc5_A          185 DEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSD-DAAMARMRRQQM--PWSVNALAALAGEVALQ  261 (364)
T ss_dssp             ECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCC-HHHHHHHHHHSC--TTCSCHHHHHHHHHGGG
T ss_pred             ECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECC-HHHHHHHHHhCC--CCCCCHHHHHHHHHHHh
Confidence            9999  321   112222345679999999999999999999999 88 799998887654  46789999999988887


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCe
Q 024997          140 VVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKI  219 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi  219 (259)
                      .      ..++++.++.++++++.+.+.|+++++             +... +..|.|+|++++....++...++ ++||
T Consensus       262 ~------~~~~~~~~~~~~~~~~~l~~~L~~~~~-------------~~~~-~~~g~~~~~~~~~~~~~l~~~l~-~~gi  320 (364)
T 1lc5_A          262 D------SAWQQATWHWLREEGARFYQALCQLPL-------------LTVY-PGRANYLLLRCEREDIDLQRRLL-TQRI  320 (364)
T ss_dssp             C------HHHHHHHHHHHHHHHHHHHHHHHTSTT-------------EEEC-CCSSSEEEEEESCTTCCHHHHHH-TTTE
T ss_pred             C------cHHHHHHHHHHHHHHHHHHHHHhcCCC-------------CEEC-CCCCeEEEEECCCcHHHHHHHHH-HCCc
Confidence            2      357888899999999999999987643             3333 34567788888653234555554 6799


Q ss_pred             eeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          220 IGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       220 ~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      .++||..|+. +++++|||++ ++++++++++.|+++++
T Consensus       321 ~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~~  358 (364)
T 1lc5_A          321 LIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVLT  358 (364)
T ss_dssp             ECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC-
T ss_pred             EEeeCcccCCCCCCEEEEEeC-CHHHHHHHHHHHHHHhh
Confidence            9999998864 4689999996 46777888888877764

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.97  E-value=7.2e-31  Score=229.52  Aligned_cols=235  Identities=13%  Similarity=0.058  Sum_probs=179.6

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCC---CCceEEEEcCCCCCChhhH--------HHhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASS---DTHLVEFVTAPNNPDGQMN--------KAVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~--------~~la~~~~~   61 (259)
                      +|+|+.|...++..|.++.        .+.+|++.|++.++   ++++++++++||||||.++        .++|+++|+
T Consensus       150 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~  229 (420)
T 4f4e_A          150 DPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRL  229 (420)
T ss_dssp             ESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred             CCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCc
Confidence            4899999999999988752        45678899998886   6789999999999999987        278999999


Q ss_pred             EEEeeccc--c--CC--CCCCC---CCCCCCeEEEeccccccCCCcceEEEEEe--cCHHHHHHH----HHhhhhhcCCC
Q 024997           62 KSIYDHAY--F--WP--HFAPI---PAPADEELMIFTISKLTGHAGSRFGWAVI--KDEAVYQRM----SAYISLNTMGV  126 (259)
Q Consensus        62 ~vi~De~y--~--~~--~~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i~~--~~~~~~~~~----~~~~~~~~~~~  126 (259)
                      ++|+||+|  |  ..  ...++   .+..+++++++|+||.+|++|+|+||+++  +++++++.+    +...+....++
T Consensus       230 ~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (420)
T 4f4e_A          230 VPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNP  309 (420)
T ss_dssp             EEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSC
T ss_pred             EEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCC
Confidence            99999999  2  11  11111   13567899999999999999999999864  335665543    33333455667


Q ss_pred             CHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC
Q 024997          127 SRECQLRAFKLLKVVL-EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE  205 (259)
Q Consensus       127 ~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (259)
                      +.+.|.++..++.... .+..++++++.+++++++++.+.+.|+++..       +.   .+....+++|+|+|++++  
T Consensus       310 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------~~---~~~~~~~~~g~~~~~~~~--  377 (420)
T 4f4e_A          310 PTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGI-------ER---DFSFINAQRGMFSYSGLT--  377 (420)
T ss_dssp             CSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------SS---CCTHHHHSCSSEEECCCC--
T ss_pred             CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CC---CceeECCCccEEEEeCCC--
Confidence            8899999888887310 0001456788899999999999999997631       00   034456789999998873  


Q ss_pred             chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHhh
Q 024997          206 EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       206 ~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l~  257 (259)
                       .+.+..+++++||.++|+         .|+|++. +++++++++++|+++++
T Consensus       378 -~~~~~~~l~~~gI~v~~~---------~Ris~~~~~~~~i~~~~~~l~~~l~  420 (420)
T 4f4e_A          378 -SAQVDRLREEFGIYAVST---------GRICVAALNTRNLDVVANAIAAVLK  420 (420)
T ss_dssp             -HHHHHHHHHHHCEECCTT---------SEEEGGGCCTTTHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHhCCEEecCC---------CeEEEecCCHHHHHHHHHHHHHHhC
Confidence             567888888999999984         2999987 88889999999998863

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.97  E-value=1e-30  Score=230.54  Aligned_cols=242  Identities=13%  Similarity=0.077  Sum_probs=183.4

Q ss_pred             CCCcccchhhhh----hccCccc---------ccccChhhhcccCC---CCceEEEEcCCCCCChhhH--------HHhh
Q 024997            1 MPFYPLYQEQTD----YFESVDY---------KFEGEANLWGNASS---DTHLVEFVTAPNNPDGQMN--------KAVL   56 (259)
Q Consensus         1 ~P~y~~~~~~~~----~~g~~~~---------~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~--------~~la   56 (259)
                      +|+|+.|...++    ..|.++.         ++.+|+++|++.++   ++++++++++||||||.++        .++|
T Consensus       152 ~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~  231 (448)
T 3meb_A          152 STTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIM  231 (448)
T ss_dssp             SSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHH
T ss_pred             CCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHH
Confidence            599999999999    8887652         35678899998884   4688889999999999987        2789


Q ss_pred             cCCCcEEEeeccc--cCCC-----CCCCC---CCCCCeEEEeccccccCCCcceEEEE--Ee--------cCH----HHH
Q 024997           57 KGPYAKSIYDHAY--FWPH-----FAPIP---APADEELMIFTISKLTGHAGSRFGWA--VI--------KDE----AVY  112 (259)
Q Consensus        57 ~~~~~~vi~De~y--~~~~-----~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i--~~--------~~~----~~~  112 (259)
                      +++|+++|+||+|  |...     ...+.   ...+++++++||||.||++|+|+||+  ++        +++    +++
T Consensus       232 ~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~  311 (448)
T 3meb_A          232 KEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMV  311 (448)
T ss_dssp             HHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHH
T ss_pred             HHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHH
Confidence            9999999999999  3111     11111   34567999999999999999999998  76        535    677


Q ss_pred             HHHHHhhhhhcCCCCHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeC
Q 024997          113 QRMSAYISLNTMGVSRECQLRAFKLLKVVL-EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIR  191 (259)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  191 (259)
                      +.+....+....+++.+.|.++..++.... .....+++++.+++++++++.+.+.|++++.-.......     +....
T Consensus       312 ~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~-----~~~~~  386 (448)
T 3meb_A          312 SGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGT-----WDHIL  386 (448)
T ss_dssp             HHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCC-----CTHHH
T ss_pred             HHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccc-----cceeC
Confidence            777776666777889999999988887310 000113477888899999999999998762100000000     33456


Q ss_pred             CCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          192 PPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      +++++|+|++++   .+.+..+++++||.+.||+        .|||++. +.+++++++++|++++++
T Consensus       387 ~~~g~~~~~~~~---~~~~~~ll~~~gV~v~~G~--------gRis~a~~~~~~i~~~~~~l~~~l~~  443 (448)
T 3meb_A          387 TAIGMFTFTGLT---PEHVDYLKEKWSIYLVKAG--------GRMSMCGLTESNCDYVAEAIHDAVTK  443 (448)
T ss_dssp             HCCSSEEECCCC---HHHHHHHHHHHCEEECSGG--------GEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCC---HHHHHHHHHhCCEEEeCCC--------cEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            789999998874   6788888888999999976        2999988 888999999999998763

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.97  E-value=6.6e-30  Score=222.65  Aligned_cols=235  Identities=11%  Similarity=0.067  Sum_probs=175.1

Q ss_pred             CCCcccchhhhhhccCcc---------cccccChhhhcccC---CCCceEEEEcCCCCCChhhHH--------HhhcCCC
Q 024997            1 MPFYPLYQEQTDYFESVD---------YKFEGEANLWGNAS---SDTHLVEFVTAPNNPDGQMNK--------AVLKGPY   60 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~---------~~~~~d~~~l~~~~---~~~~~~i~i~~p~NPtG~~~~--------~la~~~~   60 (259)
                      +|+|++|..+++..|.+.         ..+.+|.+.+.+.+   .++++++++++||||||.+++        ++|++++
T Consensus       144 ~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~  223 (420)
T 4h51_A          144 DPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKH  223 (420)
T ss_dssp             ESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             cCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence            599999999999999863         23467777766655   567889899999999999992        8899999


Q ss_pred             cEEEeeccc--c--CCC-CCC-----CCCCCCCeEEEeccccccCCCcceEEEEEecCH------HHHHHHHHhhhhhcC
Q 024997           61 AKSIYDHAY--F--WPH-FAP-----IPAPADEELMIFTISKLTGHAGSRFGWAVIKDE------AVYQRMSAYISLNTM  124 (259)
Q Consensus        61 ~~vi~De~y--~--~~~-~~~-----~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~------~~~~~~~~~~~~~~~  124 (259)
                      +++|+||+|  |  +.. ...     ..+..++++++.||||.|+++|+|+||++++.+      .+...+....+....
T Consensus       224 ~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s  303 (420)
T 4h51_A          224 HQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYT  303 (420)
T ss_dssp             CEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTS
T ss_pred             ceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccC
Confidence            999999999  3  111 001     113557799999999999999999999998741      223334444556678


Q ss_pred             CCCHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecC
Q 024997          125 GVSRECQLRAFKLLKVVL-EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCE  203 (259)
Q Consensus       125 ~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (259)
                      +++...|.++..++.... .......+...+++++++|+.+.+.|+.++.-         .+ |..+.+++|+|.|+.++
T Consensus       304 ~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~---------~~-~~~i~~q~GmF~~~gls  373 (420)
T 4h51_A          304 CPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTP---------GS-WEHVINQIGMFSFLGLS  373 (420)
T ss_dssp             SCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS---------SC-CTHHHHCCSSEEECCCC
T ss_pred             cchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CC-CCeecCCCceEEecCcC
Confidence            889999999888887321 00123456777888899999999999875410         00 44557789999998773


Q ss_pred             CCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          204 REEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       204 ~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                         .+.+ ++|+++||.+.|+     +    |||++. ++++++.+.++|.+++++
T Consensus       374 ---~e~v-~~L~e~~Vy~~~~-----g----Ris~Agl~~~ni~~~a~aI~~vvr~  416 (420)
T 4h51_A          374 ---KAQC-EYCQNHNIFITVS-----G----RANMAGLTHETALMLAQTINDAVRN  416 (420)
T ss_dssp             ---HHHH-HHHHHTTEECCTT-----C----EEEGGGCCHHHHHHHHHHHHHHHC-
T ss_pred             ---HHHH-HHHHhCCEEEcCC-----C----EEEeccCCHHHHHHHHHHHHHHHHH
Confidence               4444 5678899998873     1    999987 999999999999998763

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.97  E-value=1.1e-29  Score=218.29  Aligned_cols=228  Identities=17%  Similarity=0.176  Sum_probs=180.0

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCC-CceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSD-THLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~   68 (259)
                      +|+|+.|...++..|.++.      .|.+|+++|++.+++ +++++++++||||||.+++     ++++.+++++|+||+
T Consensus       123 ~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~  202 (369)
T 3cq5_A          123 QPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEA  202 (369)
T ss_dssp             ESSCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECT
T ss_pred             CCChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECC
Confidence            4899999998888887652      356788899988866 7889899999999999983     788888899999999


Q ss_pred             c--cC--CCCCCCCCCCC-CeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 024997           69 Y--FW--PHFAPIPAPAD-EELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLE  143 (259)
Q Consensus        69 y--~~--~~~~~~~~~~~-~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~  143 (259)
                      |  |.  .+.....+..+ ++++++|+||.+|++|+|+||++++ +++++.+......  ++++++.|.++.++++.   
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~--~~~~~~~~~a~~~~l~~---  276 (369)
T 3cq5_A          203 YAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN-PAFIDAVMLVRLP--YHLSALSQAAAIVALRH---  276 (369)
T ss_dssp             TGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC-THHHHHHHTTSCT--TCSCHHHHHHHHHHHHT---
T ss_pred             chhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeC-HHHHHHHHHcCCC--CCCCHHHHHHHHHHhcC---
Confidence            9  32  12222223345 7899999999999999999999999 5999988876553  56889999999999983   


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeec
Q 024997          144 DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGRE  223 (259)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~  223 (259)
                         .+++++.+++++++++.+.+.|++.+              +... +..+.|+|++++ .+.+.+.+.|.++||.++|
T Consensus       277 ---~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~-~~~~~~~~~~~~-~~~~~l~~~l~~~gi~v~~  337 (369)
T 3cq5_A          277 ---SADTLGTVEKLSVERVRVAARLEELG--------------YAVV-PSESNFVFFGDF-SDQHAAWQAFLDRGVLIRD  337 (369)
T ss_dssp             ---HHHHHTHHHHHHHHHHHHHHHHHHHT--------------CEEE-CCSSSEEEEECC-SSHHHHHHHHHHTTEECBC
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHhCC--------------CEEC-CCCCeEEEEECC-CCHHHHHHHHHHCCEEEEE
Confidence               35678888999999999999998643              3334 345678898886 3344455555689999999


Q ss_pred             CCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          224 GKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       224 g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      |   + .++++|||++ +++++++++++|+++++.
T Consensus       338 ~---~-~~~~iRis~~-~~~~i~~~~~~l~~~~~~  367 (369)
T 3cq5_A          338 V---G-IAGHLRTTIG-VPEENDAFLDAAAEIIKL  367 (369)
T ss_dssp             C---S-CTTEEEEECC-CHHHHHHHHHHHHHHHTT
T ss_pred             C---C-CCCeEEEEeC-CHHHHHHHHHHHHHHHhc
Confidence            7   2 2589999997 789999999999998764

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.97  E-value=1.3e-30  Score=225.83  Aligned_cols=234  Identities=12%  Similarity=0.026  Sum_probs=177.5

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCC---CCceEEEEcCCCCCChhhH--------HHhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASS---DTHLVEFVTAPNNPDGQMN--------KAVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~--------~~la~~~~~   61 (259)
                      +|+|+.|...++..|.++.        .+.+|+++|++.++   ++++++++++||||||.++        .++|+++|+
T Consensus       128 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~  207 (397)
T 3fsl_A          128 DPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKAREL  207 (397)
T ss_dssp             SSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred             CCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCE
Confidence            5899999999999887652        45678899999886   6788999999999999987        278999999


Q ss_pred             EEEeeccc--cCCC----CCCC---CCCCCCeEEEeccccccCCCcceEEEEEe--cCHHHHHHHHHh----hhhhcCCC
Q 024997           62 KSIYDHAY--FWPH----FAPI---PAPADEELMIFTISKLTGHAGSRFGWAVI--KDEAVYQRMSAY----ISLNTMGV  126 (259)
Q Consensus        62 ~vi~De~y--~~~~----~~~~---~~~~~~~i~~~S~SK~~g~~G~R~G~i~~--~~~~~~~~~~~~----~~~~~~~~  126 (259)
                      ++|+||+|  |...    ..++   .+..+++++++|+||.+|++|+|+||+++  .++++++.+...    ......++
T Consensus       208 ~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (397)
T 3fsl_A          208 IPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSP  287 (397)
T ss_dssp             EEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSC
T ss_pred             EEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCC
Confidence            99999999  3111    1111   13567899999999999999999999975  335666554332    23344566


Q ss_pred             CHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC
Q 024997          127 SRECQLRAFKLLKVVL-EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE  205 (259)
Q Consensus       127 ~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (259)
                      +.+.|.++..++.... ......++++.+++++++++.+.+.|+++..       +.+   +....+++|+|+|++++  
T Consensus       288 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------~~~---~~~~~~~~~~~~~~~~~--  355 (397)
T 3fsl_A          288 PNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMP-------ERN---FDYLLNQRGMFSYTGLS--  355 (397)
T ss_dssp             CSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-------TSC---CTHHHHCCSSEEECCCC--
T ss_pred             CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CCC---ceeecCCceEEEecCCC--
Confidence            8899998888876310 0001456788899999999999999987641       000   33446788999998874  


Q ss_pred             chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHh
Q 024997          206 EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELI  256 (259)
Q Consensus       206 ~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l  256 (259)
                       .+.+..+++++||.++||.         |||++. +++++++++++|++++
T Consensus       356 -~~~~~~~l~~~gi~v~~g~---------Ris~~~~~~~~i~~~~~~l~~~l  397 (397)
T 3fsl_A          356 -AAQVDRLREEFGVYLIASG---------RMCVAGLNTANVQRVAKAFAAVM  397 (397)
T ss_dssp             -HHHHHHHHHTTCEECCTTC---------EEEGGGCCTTTHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHhCCEEECCCC---------eEEEEecCHhhHHHHHHHHHhhC
Confidence             5667888889999999863         999987 8899999999998764

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.97  E-value=2.2e-29  Score=215.67  Aligned_cols=229  Identities=18%  Similarity=0.211  Sum_probs=179.1

Q ss_pred             CCCcccchhhhhhccCcccccccCh----hhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc--
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEGEA----NLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY--   69 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~d~----~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y--   69 (259)
                      +|+|+.|...++..|.++..+..+.    +++++.+  +++++++++||||||.+++     ++|+++|+++|+||+|  
T Consensus       113 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~--~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~  190 (360)
T 3hdo_A          113 HPSYSYYGTLAEVQGARVRTFGLTGDFRIAGFPERY--EGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAE  190 (360)
T ss_dssp             SSSCTHHHHHHHHHTCEEEEECBCTTSSBTTCCSSB--CSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGG
T ss_pred             CCChHHHHHHHHHCCCEEEEeeCCCCCCHHHHHhhc--CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHh
Confidence            5899999999999888775443332    3333332  4568899999999999983     8899999999999999  


Q ss_pred             cCCC-CCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcc
Q 024997           70 FWPH-FAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNN  148 (259)
Q Consensus        70 ~~~~-~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  148 (259)
                      |... .....+..+++++++|+||.+|++|+|+||++++ +++++.+......  ++++++.|.++..+++      ..+
T Consensus       191 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~------~~~  261 (360)
T 3hdo_A          191 FAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIAR-PEVIAALDKIRDH--YNLDRLAQAACVAALR------DQA  261 (360)
T ss_dssp             GSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECC-HHHHHHHHHHSCS--CCSCHHHHHHHHHHHH------CHH
T ss_pred             hCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeC-HHHHHHHHHhCCC--CCCCHHHHHHHHHHhc------CHH
Confidence            3221 1111134578999999999999999999999998 7999999887654  6789999999999998      345


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCccc
Q 024997          149 IFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFR  228 (259)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~  228 (259)
                      ++.+.+++++++++.+.+.|++++              +... +..+.|+|+.++..+.+.+.+.|.++||.++++... 
T Consensus       262 ~~~~~~~~~~~~~~~l~~~L~~~~--------------~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~-  325 (360)
T 3hdo_A          262 YLSECCRRIRETREWFTTELRSIG--------------YDVI-PSQGNYLFATPPDRDGKRVYDGLYARKVLVRHFSDP-  325 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT--------------CEEC-CCSSSEEEEECTTCCHHHHHHHHHHTTEECBCCCST-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC--------------CEEc-CCCccEEEEECCCCCHHHHHHHHHHCCEEEEECCCC-
Confidence            788899999999999999998763              3333 445678888887655666666777899999997762 


Q ss_pred             CCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          229 AEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       229 ~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      ..++++|||++ ++++++++++.|+++-+
T Consensus       326 ~~~~~iRis~~-~~~e~~~l~~al~~~~~  353 (360)
T 3hdo_A          326 LLAHGMRISIG-TREEMEQTLAALKEIGE  353 (360)
T ss_dssp             TTTTSEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence            34589999996 78999999999988754

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.97  E-value=3.3e-29  Score=213.71  Aligned_cols=231  Identities=16%  Similarity=0.249  Sum_probs=171.4

Q ss_pred             CCCcccchhhhhhccCccccccc-Ch-hhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCC-cEEEeeccc--c
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEG-EA-NLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPY-AKSIYDHAY--F   70 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~-d~-~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~-~~vi~De~y--~   70 (259)
                      +|+|+.|...++..|.++..+.. +. +.+.   .++++++++++||||||.+++     ++++..+ .++|+||+|  |
T Consensus        96 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~  172 (350)
T 3fkd_A           96 IPSFAEYEDACRMYEHEVCFYPSNEDIGEAD---FSNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSF  172 (350)
T ss_dssp             ESCCHHHHHHHHHTTCEEEEEETTSCGGGSC---CTTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTS
T ss_pred             CCCcHHHHHHHHHcCCeEEEEecCCccccCc---cCCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhh
Confidence            48999999999999988766665 43 3332   267889999999999999983     5555443 599999999  3


Q ss_pred             C--CCC-CCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCc
Q 024997           71 W--PHF-APIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGN  147 (259)
Q Consensus        71 ~--~~~-~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~  147 (259)
                      .  ... ....+..+++++++|+||.+|++|+|+||++++ +++++.+......  ++++++.|.++..+++.     .+
T Consensus       173 ~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~-----~~  244 (350)
T 3fkd_A          173 TTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVAN-KDFMKRVAAFSTP--WAVNALAIEAAKFILIH-----PA  244 (350)
T ss_dssp             CSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECC-HHHHHHHHTTCCT--TCSCHHHHHHHHHHHHC-----TT
T ss_pred             ccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeC-HHHHHHHHHhCCC--CCCCHHHHHHHHHHHhC-----HH
Confidence            1  111 111145678999999999999999999999998 7999999887653  67899999999999984     33


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCch-HHHHHHHHHcCeeeecCCc
Q 024997          148 NIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREED-KDCYGILKAAKIIGREGKK  226 (259)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~gi~~~~g~~  226 (259)
                      .+.++.++.. ++++.+.+.|+++++             +.. .+..+.|+|+.++..+. ++...+++++||.++||..
T Consensus       245 ~~~~~~~~~~-~~~~~l~~~L~~~~~-------------~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~  309 (350)
T 3fkd_A          245 QFTLPIRKWQ-RNTVDFITALNRLDG-------------VEV-HPSGTTFFLLRLKKGTAAELKKYMLEEYNMLIRDASN  309 (350)
T ss_dssp             TTCCCHHHHH-HHHHHHHHHHHHSTT-------------EEE-CCCSSSEEEEEESSSCHHHHHHHHHHTTCEECEECTT
T ss_pred             HHHHHHHHHH-HHHHHHHHHHhcCCC-------------cEE-CCCCCcEEEEECCCCCHHHHHHHHHHHCCEEEEeCcc
Confidence            3444444444 888899999987643             333 34556777888876444 4444444438999999999


Q ss_pred             ccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          227 FRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       227 f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      |+. +++++|||++ ++++++++++.|++++++
T Consensus       310 f~~~~~~~iRis~~-~~~~~~~l~~al~~~~~~  341 (350)
T 3fkd_A          310 FRGLDESYVRITTQ-RPAQNQLFIKALETFLEK  341 (350)
T ss_dssp             STTCCTTEEEEECC-CHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHH
Confidence            975 4789999996 667777888888877765

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.97  E-value=2e-30  Score=225.89  Aligned_cols=235  Identities=13%  Similarity=0.091  Sum_probs=178.3

Q ss_pred             CCCcccchhhhhhccCc-c--------cccccChhhhcccCC---CCceEEEEcCCCCCChhhH--------HHhhcCCC
Q 024997            1 MPFYPLYQEQTDYFESV-D--------YKFEGEANLWGNASS---DTHLVEFVTAPNNPDGQMN--------KAVLKGPY   60 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~-~--------~~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~--------~~la~~~~   60 (259)
                      +|+|+.|...++..|.+ +        ..+.+|+++|++.++   ++++++++++||||||.++        .++|+++|
T Consensus       137 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~  216 (412)
T 1ajs_A          137 SPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRF  216 (412)
T ss_dssp             ESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence            48999999999988887 5        235678888988874   3678888999999999986        27889999


Q ss_pred             cEEEeeccc--cCC-----CCCCCC---CCCCCeEEEeccccccCCCcceEEEEEe---cCHH----HHHHHHHhhhhhc
Q 024997           61 AKSIYDHAY--FWP-----HFAPIP---APADEELMIFTISKLTGHAGSRFGWAVI---KDEA----VYQRMSAYISLNT  123 (259)
Q Consensus        61 ~~vi~De~y--~~~-----~~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~---~~~~----~~~~~~~~~~~~~  123 (259)
                      +++|+||+|  |..     ...++.   ...+++++++|+||.+|.+|+|+||+++   + ++    +++.+........
T Consensus       217 ~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~-~~~~~~~~~~~~~~~~~~~  295 (412)
T 1ajs_A          217 LFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKE-PDSILRVLSQMQKIVRVTW  295 (412)
T ss_dssp             CEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSS-HHHHHHHHHHHHHHHHTTT
T ss_pred             CEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEEEEEecCC-HHHHHHHHHHHHHHHhccc
Confidence            999999998  321     111221   2457899999999999988999999999   6 67    4444554344444


Q ss_pred             CCCCHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEec
Q 024997          124 MGVSRECQLRAFKLLKVVL-EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKC  202 (259)
Q Consensus       124 ~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (259)
                      .+++++.|.++.++++... ....+.++++.+++++++++.+.+.|++++.       +.   .+....+.+|+|+|+++
T Consensus       296 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------~~---~~~~~~~~~~~~~~~~~  365 (412)
T 1ajs_A          296 SNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKT-------PG---TWNHITDQIGMFSFTGL  365 (412)
T ss_dssp             SSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------SS---CCHHHHHCCSSEEECCC
T ss_pred             CCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-------CC---CeeEEcCCCceEEEeCC
Confidence            5568999999999988310 0001346788899999999999999987540       00   02334678899999877


Q ss_pred             CCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          203 EREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       203 ~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      +   .+.+..+++++||.++|+         +|||++. +++++++++++|++++++
T Consensus       366 ~---~~~~~~~l~~~gv~v~~~---------~Ris~~~~~~~~i~~~~~~l~~~l~~  410 (412)
T 1ajs_A          366 N---PKQVEYLINQKHIYLLPS---------GRINMCGLTTKNLDYVATSIHEAVTK  410 (412)
T ss_dssp             C---HHHHHHHHHTTCEECCTT---------SEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred             C---HHHHHHHHHhCCEEecCC---------cEEEeeeCCHHHHHHHHHHHHHHHHh
Confidence            4   567788888899999973         5999986 899999999999998864

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.96  E-value=8.2e-29  Score=210.17  Aligned_cols=217  Identities=21%  Similarity=0.245  Sum_probs=167.0

Q ss_pred             CCcccchhhhhhccCcccc------cccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc-
Q 024997            2 PFYPLYQEQTDYFESVDYK------FEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY-   69 (259)
Q Consensus         2 P~y~~~~~~~~~~g~~~~~------~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y-   69 (259)
                      |+|+.|...++..|.++..      |.+|+++|     ++++++++++||||||.+++     ++++..| ++|+||+| 
T Consensus       104 p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~  177 (335)
T 1uu1_A          104 PTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNV-----GEGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYY  177 (335)
T ss_dssp             SSCHHHHHHHHHHTCEEEECCCCTTSCCCCCCC-----CTTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTH
T ss_pred             CCcHHHHHHHHHcCCeEEEeccCCCCCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcch
Confidence            7899999888888876633      34555544     57899899999999999983     6777778 99999999 


Q ss_pred             -c-CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCc
Q 024997           70 -F-WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGN  147 (259)
Q Consensus        70 -~-~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~  147 (259)
                       | ........+..+++++++|+||.+|++|+|+||++++ +++++.+......  ++++++.|.++.++++.      .
T Consensus       178 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~--~~~~~~~~~~~~~~l~~------~  248 (335)
T 1uu1_A          178 EFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVAS-EKFIDAYNRVRLP--FNVSYVSQMFAKVALDH------R  248 (335)
T ss_dssp             HHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEEC-HHHHHHHHHHSCT--TCSCHHHHHHHHHHHHT------H
T ss_pred             hhcchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeC-HHHHHHHHHhcCC--CCcCHHHHHHHHHHhCC------H
Confidence             3 2222222234567999999999999999999999998 7999988876543  57899999999999983      3


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcc
Q 024997          148 NIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKF  227 (259)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f  227 (259)
                      +++++.+++++++++.+.+.|++++              +.. .+.+++|+|++++..+.+.+.+.|.++||.++|    
T Consensus       249 ~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~----  309 (335)
T 1uu1_A          249 EIFEERTKFIVEERERMKSALREMG--------------YRI-TDSRGNFVFVFMEKEEKERLLEHLRTKNVAVRS----  309 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT--------------CCB-CCCCSSEEEEECCTHHHHHHHHHHHHHTEEEEE----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC--------------cEE-cCCCCeEEEEECCCCCHHHHHHHHHHCCEEEEE----
Confidence            4778889999999999999998763              222 345678899998753333444445578999998    


Q ss_pred             cCCCCeEEEEeecChhhHHHHHHHHHHH
Q 024997          228 RAEARFVRLSLLKSQDDFDLLLHRLDEL  255 (259)
Q Consensus       228 ~~~~~~~Ris~~~~~~~~~~~~~~l~~~  255 (259)
                        .++++|||++. ++++++++++|+++
T Consensus       310 --~~~~iRis~~~-~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          310 --FREGVRITIGK-REENDMILRELEVF  334 (335)
T ss_dssp             --ETTEEEEECCC-HHHHHHHHHHHHCC
T ss_pred             --CCCeEEEEeCC-HHHHHHHHHHHHhh
Confidence              24799999964 57799999998865

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.96  E-value=7.5e-30  Score=222.36  Aligned_cols=234  Identities=13%  Similarity=0.103  Sum_probs=176.8

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCC---CceEEEEcCCCCCChhhH--------HHhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSD---THLVEFVTAPNNPDGQMN--------KAVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~---~~~~i~i~~p~NPtG~~~--------~~la~~~~~   61 (259)
                      +|+|+.|...++..|.++.        .+.+|+++|++.+++   .+.++++++||||||.++        .++|+++|+
T Consensus       131 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~  210 (412)
T 1yaa_A          131 KPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNH  210 (412)
T ss_dssp             ESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Confidence            4899999999998887652        356788889888743   356666699999999986        278999999


Q ss_pred             EEEeeccc--c--CC---CCCCCC---CCCC---CeEEEeccccccCCCcceEEEEE--e-----cCHH----HHHHHHH
Q 024997           62 KSIYDHAY--F--WP---HFAPIP---APAD---EELMIFTISKLTGHAGSRFGWAV--I-----KDEA----VYQRMSA  117 (259)
Q Consensus        62 ~vi~De~y--~--~~---~~~~~~---~~~~---~~i~~~S~SK~~g~~G~R~G~i~--~-----~~~~----~~~~~~~  117 (259)
                      ++|+||+|  |  ..   ...++.   ...+   ++++++|+||.+|.+|+|+||++  +     + ++    +++.+..
T Consensus       211 ~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~-~~~~~~l~~~l~~  289 (412)
T 1yaa_A          211 IALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQN-KTIKPAVTSQLAK  289 (412)
T ss_dssp             EEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTH-HHHHHHHHHHHHH
T ss_pred             EEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCC-HHHHHHHHHHHHH
Confidence            99999999  3  21   111221   2234   79999999999998899999998  7     5 56    7887777


Q ss_pred             hhhhhcCCCCHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCe
Q 024997          118 YISLNTMGVSRECQLRAFKLLKVVL-EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPA  196 (259)
Q Consensus       118 ~~~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (259)
                      .......+++.+.|.++.++++... ....+.++++.+++++++++.+.+.|++++.       +.   .+.+..+++|+
T Consensus       290 ~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------~~---~~~~~~~~~~~  359 (412)
T 1yaa_A          290 IIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGT-------PG---NWDHIVNQCGM  359 (412)
T ss_dssp             HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------SS---CCTHHHHCCSS
T ss_pred             HHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-------CC---CeeeeccCceE
Confidence            5555556678999999999987410 0001247888899999999999999987641       00   02234678899


Q ss_pred             eEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHhh
Q 024997          197 YAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       197 ~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l~  257 (259)
                      |+|++++   .+.+..+++++||.+++         ++|||++. +++++++++++|+++++
T Consensus       360 ~~~~~~~---~~~~~~~l~~~gi~v~~---------~~Ris~~~~~~~~i~~~~~~l~~~~~  409 (412)
T 1yaa_A          360 FSFTGLT---PQMVKRLEETHAVYLVA---------SGRASIAGLNQGNVEYVAKAIDEVVR  409 (412)
T ss_dssp             EEECCCC---HHHHHHHHHHHCEECCT---------TSEEEGGGCCTTTHHHHHHHHHHHHH
T ss_pred             EEeeCCC---HHHHHHHHHhCCEEecc---------CcEEEEccCCHhHHHHHHHHHHHHHH
Confidence            9998763   45567888889999987         47999987 89999999999998875

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.96  E-value=6.6e-30  Score=221.32  Aligned_cols=234  Identities=13%  Similarity=0.090  Sum_probs=174.1

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCC---CceEEEEcCCCCCChhhH--------HHhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSD---THLVEFVTAPNNPDGQMN--------KAVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~---~~~~i~i~~p~NPtG~~~--------~~la~~~~~   61 (259)
                      +|+|+.|...++..|.++.        .+.+|+++|++.+++   +++++++++||||||.++        .++|+++|+
T Consensus       127 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~  206 (396)
T 2q7w_A          127 NPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGW  206 (396)
T ss_dssp             ESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred             CCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Confidence            4899999999998887652        356688899888853   478888999999999986        278899999


Q ss_pred             EEEeeccc--cCC----CCCCCC---CCCCCeEEEeccccccCCCcceEEEEEe--cCHH----HHHHHHHhhhhhcCCC
Q 024997           62 KSIYDHAY--FWP----HFAPIP---APADEELMIFTISKLTGHAGSRFGWAVI--KDEA----VYQRMSAYISLNTMGV  126 (259)
Q Consensus        62 ~vi~De~y--~~~----~~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~--~~~~----~~~~~~~~~~~~~~~~  126 (259)
                      ++|+||+|  |..    ...++.   ...+++++++|+||.+|++|+|+||+++  ++++    +++.+.........++
T Consensus       207 ~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (396)
T 2q7w_A          207 LPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNP  286 (396)
T ss_dssp             EEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSC
T ss_pred             EEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCC
Confidence            99999999  311    111221   2346899999999999999999999997  3353    5555554444444556


Q ss_pred             CHHHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC
Q 024997          127 SRECQLRAFKLLKVV-LEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE  205 (259)
Q Consensus       127 ~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (259)
                      +++.|.++.++++.. +.+..++++++.+++++++++.+.+.|++++.       +.   .+.+..+.+|+|+|++++  
T Consensus       287 ~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------~~---~~~~~~~~~~~~~~~~~~--  354 (396)
T 2q7w_A          287 PAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA-------NR---DFSFIIKQNGMFSFSGLT--  354 (396)
T ss_dssp             CHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTC-------CS---CCTHHHHCCSSEEECCCC--
T ss_pred             CcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CC---CcceecCCCceEEEecCC--
Confidence            899999998888731 00001356778888999999999999987641       00   022346788999998774  


Q ss_pred             chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHh
Q 024997          206 EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELI  256 (259)
Q Consensus       206 ~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l  256 (259)
                       .+.+..+++++||.++||         +|||++. +++++++++++|++++
T Consensus       355 -~~~~~~~l~~~gv~v~~~---------~Ris~~~~~~e~i~~~~~~l~~~l  396 (396)
T 2q7w_A          355 -KEQVLRLREEFGVYAVAS---------GRVNVAGMTPDNMAPLCEAIVAVL  396 (396)
T ss_dssp             -HHHHHHHHHHHCEECCTT---------CEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHhcCeeecCC---------ceEEEeecCHHHHHHHHHHHHhcC
Confidence             467778888899999873         6999986 9999999999998764

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.95  E-value=6.8e-29  Score=214.92  Aligned_cols=233  Identities=15%  Similarity=0.051  Sum_probs=172.1

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCC---CceEEEEcCCCCCChhhH--------HHhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSD---THLVEFVTAPNNPDGQMN--------KAVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~---~~~~i~i~~p~NPtG~~~--------~~la~~~~~   61 (259)
                      +|+|+.|...++..|.++.        .+.+|+++|++.+++   .++++++++||||||.++        .++|+++|+
T Consensus       124 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~  203 (394)
T 2ay1_A          124 DPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGA  203 (394)
T ss_dssp             ESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred             CCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Confidence            4899999999988887652        356788889888743   467878899999999987        278999999


Q ss_pred             EEEeeccc--cCCC----CCCCC---CCCCCeEEEeccccccCCCcceEEEEEe--cCHHHHHHHH----HhhhhhcCCC
Q 024997           62 KSIYDHAY--FWPH----FAPIP---APADEELMIFTISKLTGHAGSRFGWAVI--KDEAVYQRMS----AYISLNTMGV  126 (259)
Q Consensus        62 ~vi~De~y--~~~~----~~~~~---~~~~~~i~~~S~SK~~g~~G~R~G~i~~--~~~~~~~~~~----~~~~~~~~~~  126 (259)
                      ++|+||+|  |...    ..++.   ...+++++++|+||.+|++|+|+||+++  +++++++.+.    ........++
T Consensus       204 ~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  283 (394)
T 2ay1_A          204 LPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFP  283 (394)
T ss_dssp             EEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSC
T ss_pred             EEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCC
Confidence            99999999  3111    11121   2346799999999999999999999998  3356655443    2333334456


Q ss_pred             CHHHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC
Q 024997          127 SRECQLRAFKLLKVV-LEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE  205 (259)
Q Consensus       127 ~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (259)
                      +++.|.++.++++.. +.+..++++++.+++++++++.+.+.|++++.       +.   .+....+.+|+|+|++++  
T Consensus       284 ~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------~~---~~~~~~~~~g~~~~~~~~--  351 (394)
T 2ay1_A          284 PFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSG-------SD---RFGFVAEHRGMFSRLGAT--  351 (394)
T ss_dssp             CCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------SS---TTTHHHHCCSSEEECCCC--
T ss_pred             ChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CC---CeeEEcCCceEEEeeCCC--
Confidence            889999998888731 00001346788889999999999999987541       00   022345678999998774  


Q ss_pred             chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHH
Q 024997          206 EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDEL  255 (259)
Q Consensus       206 ~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~  255 (259)
                       .+.+..+++++||.++||         +|||++. +++++++++++|+++
T Consensus       352 -~~~~~~~l~~~gi~v~~~---------~Ris~~~~~~~~i~~~~~~l~~~  392 (394)
T 2ay1_A          352 -PEQVKRIKEEFGIYMVGD---------SRINIAGLNDNTIPILARAIIEV  392 (394)
T ss_dssp             -HHHHHHHHHHHCEECCTT---------CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhCCEEecCC---------CeEEeecCCHhhHHHHHHHHHHc
Confidence             356778888899999874         5999986 899999999999876

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.95  E-value=3.4e-27  Score=204.56  Aligned_cols=233  Identities=12%  Similarity=0.034  Sum_probs=175.9

Q ss_pred             CCCcccchhhhhhccCcccccc-cChhhhcccCCC----CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc
Q 024997            1 MPFYPLYQEQTDYFESVDYKFE-GEANLWGNASSD----THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~-~d~~~l~~~~~~----~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~   70 (259)
                      +|+|+.|...++..|.++..+. +|+++|++.+++    +++++++++|+||||.++     .++|+++|+++|+||+|.
T Consensus       134 ~p~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~  213 (398)
T 3a2b_A          134 ERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHS  213 (398)
T ss_dssp             TTCCHHHHHHHHHSSSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTT
T ss_pred             CccCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCc
Confidence            5899999999998888775443 578889888744    789999999999999987     389999999999999992


Q ss_pred             ----CCCCCCCC---CCCCC-eEEEeccccccCCCcceEEEEEecCHHHHHHHHHh-hhhhcCCCCHHHHH-HHHHHHHH
Q 024997           71 ----WPHFAPIP---APADE-ELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAY-ISLNTMGVSRECQL-RAFKLLKV  140 (259)
Q Consensus        71 ----~~~~~~~~---~~~~~-~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~-~~~~~~~~~~~~q~-~~~~~l~~  140 (259)
                          +....++.   +..++ +++++|+||.++.+|   ||++++ +++++.+... ......+.+++.|. ++..+++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~  289 (398)
T 3a2b_A          214 LGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGD-ADVIDFLKHNARSVMFSASMTPASVASTLKALEI  289 (398)
T ss_dssp             TTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEEC-HHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHH
T ss_pred             ccccCCCCCchHhhcCCCcCCeEEEecccccccCCC---cEEEeC-HHHHHHHHHhcccceecCCCCHHHHHHHHHHHHH
Confidence                11111221   22345 799999999999888   999999 7999988875 33344556666676 45577774


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCe
Q 024997          141 VLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKI  219 (259)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi  219 (259)
                      .      +++.+.+++++++++.+.+.|++++              +....+. |+++|+.++.. +...+.+.|.++||
T Consensus       290 ~------~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~-g~~~~~~~~~~~~~~~l~~~l~~~gi  348 (398)
T 3a2b_A          290 I------QNEPEHIEKLWKNTDYAKAQLLDHG--------------FDLGATE-SPILPIFIRSNEKTFWVTKMLQDDGV  348 (398)
T ss_dssp             H------HHCTHHHHHHHHHHHHHHHHHHHTT--------------CCBCSCC-SSEEEEECCCHHHHHHHHHHHHHTTE
T ss_pred             H------hhCHHHHHHHHHHHHHHHHHHHhcC--------------CCcCCCC-CCEEEEEcCCHHHHHHHHHHHHHCCc
Confidence            2      2456778899999999999998763              2233444 68889998742 23334444445699


Q ss_pred             eeecCCcccC--CCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          220 IGREGKKFRA--EARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       220 ~~~~g~~f~~--~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      .++||..|..  +.+++||+++.  +++++++++++|++++++
T Consensus       349 ~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~  391 (398)
T 3a2b_A          349 FVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQ  391 (398)
T ss_dssp             ECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            9999998864  35899999986  999999999999998764

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.95  E-value=1.6e-26  Score=201.18  Aligned_cols=238  Identities=10%  Similarity=0.040  Sum_probs=172.0

Q ss_pred             CCCcccchh----hhhhccCccccccc-ChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcC-CCcEEEeeccc
Q 024997            1 MPFYPLYQE----QTDYFESVDYKFEG-EANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKG-PYAKSIYDHAY   69 (259)
Q Consensus         1 ~P~y~~~~~----~~~~~g~~~~~~~~-d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~-~~~~vi~De~y   69 (259)
                      +|+|+.+..    .++..|.++..+.. |+++|++.++++++++++++||||||.++     .++|++ +|+++|+||+|
T Consensus       108 ~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~  187 (404)
T 1e5e_A          108 ECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTF  187 (404)
T ss_dssp             SCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTT
T ss_pred             CCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCC
Confidence            588988888    66667877654443 78889999988999999999999999998     389999 99999999999


Q ss_pred             cCCCC-CCCCCCCCCeEEEeccccccCCCcceE-EEEEecCHHHHH-HHHHhhhhh-cCCCCHHHHHHHHHHHHHHHhcC
Q 024997           70 FWPHF-APIPAPADEELMIFTISKLTGHAGSRF-GWAVIKDEAVYQ-RMSAYISLN-TMGVSRECQLRAFKLLKVVLEDG  145 (259)
Q Consensus        70 ~~~~~-~~~~~~~~~~i~~~S~SK~~g~~G~R~-G~i~~~~~~~~~-~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~  145 (259)
                      ..... .++  ..++++++.|+||.++.+|+|+ ||++++ +++++ .+....... +.+++++.|.++.+.++.     
T Consensus       188 ~~~~~~~~~--~~~~di~~~S~sK~~~~~g~ri~G~~~~~-~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~-----  259 (404)
T 1e5e_A          188 CSPMITNPV--DFGVDVVVHSATKYINGHTDVVAGLICGK-ADLLQQIRMVGIKDITGSVISPHDAWLITRGLST-----  259 (404)
T ss_dssp             TCTTTCCGG--GGTCSEEEEETTTTTTCSSCCCCEEEEEC-HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT-----
T ss_pred             chhhhCCcc--ccCCEEEEEcCccccCCCCCCeEEEEEEC-HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhH-----
Confidence            31111 112  2367999999999999999998 999999 68887 787766554 566888899888888762     


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhcCCCc---cccccccccccceeeCC----CCCeeEEEecCCCchHHHHHHHHHcC
Q 024997          146 GNNIFEFGYNTMKKRWENLSKIISLSNRFS---LQEIAPQYCTYFKKIRP----PSPAYAWVKCEREEDKDCYGILKAAK  218 (259)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ll~~~g  218 (259)
                          ...+.++..++.+.+.+.+++.+.+.   ...+...  ..+....+    .++++.| +++.. .+.+.+++++.|
T Consensus       260 ----~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~--p~~~~~~~~~~~~g~~~~~-~~~~~-~~~~~~~l~~~~  331 (404)
T 1e5e_A          260 ----LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDH--EGHDIAKKQMRMYGSMITF-ILKSG-FEGAKKLLDNLK  331 (404)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSS--TTHHHHHHHCSSCCSEEEE-EETTH-HHHHHHHHHTCS
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCC--ccHHHHHhhCCCCceEEEE-EeCCC-HHHHHHHHHhCC
Confidence                34456667788888888888765321   1111110  11222222    3677777 77642 356777888899


Q ss_pred             eeeecCCcccC--------------------------CCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          219 IIGREGKKFRA--------------------------EARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       219 i~~~~g~~f~~--------------------------~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      | +.+|..|+.                          +++++|||++.  +++++++++|+++++
T Consensus       332 i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--e~~~~li~~l~~al~  393 (404)
T 1e5e_A          332 L-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--EDADELIADFKQGLD  393 (404)
T ss_dssp             S-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHH
T ss_pred             C-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHHHHHH
Confidence            9 566665541                          15899999987  777888888877664

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.94  E-value=2.2e-25  Score=191.90  Aligned_cols=236  Identities=12%  Similarity=0.019  Sum_probs=174.2

Q ss_pred             CCCccc--chhhhhhccCccc------ccccChhhhcccC--CCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEe
Q 024997            1 MPFYPL--YQEQTDYFESVDY------KFEGEANLWGNAS--SDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIY   65 (259)
Q Consensus         1 ~P~y~~--~~~~~~~~g~~~~------~~~~d~~~l~~~~--~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~   65 (259)
                      +|+|+.  |...++..|.++.      .+.+|+++|++.+  .++++++++++|+||||.+.     .++|+++|+++|+
T Consensus       102 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~  181 (386)
T 2dr1_A          102 IIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFV  181 (386)
T ss_dssp             ESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEE
T ss_pred             cCCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEE
Confidence            478887  7888887887652      2457889999988  56889999999999999987     3899999999999


Q ss_pred             ecccc-CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHH----------------Hh--hhhhcCCC
Q 024997           66 DHAYF-WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMS----------------AY--ISLNTMGV  126 (259)
Q Consensus        66 De~y~-~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~----------------~~--~~~~~~~~  126 (259)
                      ||+|. ......+ ...+.+++++|+||.++.++ ++||++++ +++++.+.                ..  ......++
T Consensus       182 D~a~~~~~~~~~~-~~~~~di~~~s~sK~~~~~~-g~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (386)
T 2dr1_A          182 DAVSAMGGADIKF-DKWGLDVVFSSSQKAFGVPP-GLAIGAFS-ERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTP  258 (386)
T ss_dssp             ECTTTBTTBCCCT-TTTTCSEEEEETTSTTCCCS-SCEEEEEC-HHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCC
T ss_pred             EccccccCccccc-cccCCcEEEEeccccccCCC-ceEEEEEC-HHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCC
Confidence            99982 2111122 23356899999999998552 39999999 68888763                22  12334567


Q ss_pred             CHHHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCC---CCeeEEEec
Q 024997          127 SRECQLRAFKLLKVVLEDGGNN-IFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPP---SPAYAWVKC  202 (259)
Q Consensus       127 ~~~~q~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  202 (259)
                      +.+.|.++..+++..    .+. .+++.+++++++++.+.+.|+++ ++             ....++   .+.++|+.+
T Consensus       259 ~~~~~~a~~~~l~~~----~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~-------------~~~~~~~~~~~~~~~~~~  320 (386)
T 2dr1_A          259 PMPQVFGINVALRII----EKMGGKEKWLEMYEKRAKMVREGVREI-GL-------------DILAEPGHESPTITAVLT  320 (386)
T ss_dssp             CHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHHHT-TC-------------CBSSCTTCBCSSEEEEEC
T ss_pred             CHHHHHHHHHHHHHH----HHhcCHHHHHHHHHHHHHHHHHHHHHc-CC-------------eeCcCccccCCceEEEEc
Confidence            888898888888753    111 36778889999999999999876 32             222332   467888888


Q ss_pred             CC-CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          203 ER-EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       203 ~~-~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      +. .+.+.+.+.|.++||.+++|..+. ..+++||+++.  +++++++++++|++++++
T Consensus       321 ~~~~~~~~~~~~l~~~gi~v~~~~~~~-~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  378 (386)
T 2dr1_A          321 PPGIKGDEVYEAMRKRGFELAKGYGSV-KEKTFRIGHMGYMKFEDIQEMLDNLREVINE  378 (386)
T ss_dssp             CTTCCHHHHHHHHHHTTEECEECCGGG-TTTEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHCCeEEecCcccc-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            63 344444445556699999998664 35799999984  999999999999988753

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.94  E-value=3.2e-26  Score=197.99  Aligned_cols=235  Identities=9%  Similarity=-0.030  Sum_probs=172.7

Q ss_pred             CCCccc--chhhhhhccCcccc------cccChhhhcccCCC-CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEee
Q 024997            1 MPFYPL--YQEQTDYFESVDYK------FEGEANLWGNASSD-THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYD   66 (259)
Q Consensus         1 ~P~y~~--~~~~~~~~g~~~~~------~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~D   66 (259)
                      +|+|+.  |...++..|.++..      +.+|+++|++.+++ +++++++++|+||||.++     .++|+++|+++|+|
T Consensus       116 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D  195 (393)
T 1vjo_A          116 VAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVD  195 (393)
T ss_dssp             ESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEE
T ss_pred             cCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEE
Confidence            478888  88888888876532      35788999998876 888999999999999987     38999999999999


Q ss_pred             ccc-cCCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhh-------------------hhhcC-C
Q 024997           67 HAY-FWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI-------------------SLNTM-G  125 (259)
Q Consensus        67 e~y-~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~-------------------~~~~~-~  125 (259)
                      |+| |+.....+ ...+.+++++|+||.++.+| |+||++++ +++++.+....                   ..... +
T Consensus       196 ea~~~g~~~~~~-~~~~~di~~~s~sK~l~~~~-~~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  272 (393)
T 1vjo_A          196 TVTSLGGVPIFL-DAWGVDLAYSCSQKGLGCSP-GASPFTMS-SRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHT  272 (393)
T ss_dssp             CTTTTTTSCCCT-TTTTCSEEECCSSSTTCSCS-SCEEEEEC-HHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSC
T ss_pred             CCccccCcCCcc-cccCccEEEEcCcccccCCC-ceEEEEEC-HHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCC
Confidence            999 43211112 23456899999999998777 99999999 68888875420                   01123 6


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCC---CCeeEEEec
Q 024997          126 VSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPP---SPAYAWVKC  202 (259)
Q Consensus       126 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  202 (259)
                      ++.+.|.++..+++..    .+.++++.+++++++++.+.+.|+++ ++             ....++   .+.++++.+
T Consensus       273 ~~~~~~~a~~~al~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-------------~~~~~~~~~~~~~~~~~~  334 (393)
T 1vjo_A          273 APINLYYALREALRLI----AQEGLANCWQRHQKNVEYLWERLEDI-GL-------------SLHVEKEYRLPTLTTVCI  334 (393)
T ss_dssp             CCHHHHHHHHHHHHHH----HHHCHHHHHHHHHHHHHHHHHHHHHT-TC-------------CBSSCGGGBCSSEEEEEC
T ss_pred             CCHHHHHHHHHHHHHH----HHccHHHHHHHHHHHHHHHHHHHHHc-CC-------------cccCCccccCCcEEEEEc
Confidence            7888899888888752    12346778899999999999999876 32             222332   234667776


Q ss_pred             CC-Cch-HHHHHHHHHcCeeeecCCcccCCCCeEEEEe-e--cChhhHHHHHHHHHHHhh
Q 024997          203 ER-EED-KDCYGILKAAKIIGREGKKFRAEARFVRLSL-L--KSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       203 ~~-~~~-~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~-~--~~~~~~~~~~~~l~~~l~  257 (259)
                      +. .+. ++...+++++||.++||..|.. ++++|||+ +  .+++++++++++|+++++
T Consensus       335 ~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-~~~iRis~~~~~~~~~~i~~~~~~l~~~l~  393 (393)
T 1vjo_A          335 PDGVDGKAVARRLLNEHNIEVGGGLGELA-GKVWRVGLMGFNSRKESVDQLIPALEQVLR  393 (393)
T ss_dssp             CTTCCHHHHHHHHHHHHCEECEECCGGGT-TTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHhhCCEEEecCccccC-CCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence            53 233 4444555444999999997764 58999994 3  266679999999998863

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.94  E-value=6.6e-26  Score=196.18  Aligned_cols=235  Identities=10%  Similarity=0.015  Sum_probs=175.0

Q ss_pred             CCCcccchhhhhhccCcccccc-cChhhhcccCCC------CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDYKFE-GEANLWGNASSD------THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~-~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~   68 (259)
                      +|+|+.+...++..|.++..+. .|++.|++.+++      +++++++++|+||||.++     .++|+++|+++|+||+
T Consensus       134 ~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~  213 (399)
T 3tqx_A          134 ELNHASIIDGIRLCKAQRYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDS  213 (399)
T ss_dssp             TTCCHHHHHHHHSCCSEEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECT
T ss_pred             CcccHHHHHHHHHcCCceeEeCCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECC
Confidence            5889999999988888775443 677888888743      789999999999999997     3899999999999999


Q ss_pred             c-c---CCCCCCCC---C-CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhh--hcCCCCHHHHHHHHHHH
Q 024997           69 Y-F---WPHFAPIP---A-PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL--NTMGVSRECQLRAFKLL  138 (259)
Q Consensus        69 y-~---~~~~~~~~---~-~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l  138 (259)
                      | .   ........   + ..+.+++++|+||.++  |.+.||++++ +++++.+......  .+...+++.+.++...+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~--g~~gG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  290 (399)
T 3tqx_A          214 HAVGFIGENGRGTPEYCGVADRVDILTGTLGKALG--GASGGYTSGH-KEIIEWLRNRSRPYLFSNTVAPVIVATSLKVL  290 (399)
T ss_dssp             TTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSC--SSCCEEEEEC-HHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHH
T ss_pred             ccccccCCCCCchHHhhCCCCCCcEEEecchHhcc--cCceEEEEcC-HHHHHHHHHhCcceeccCCCcHHHHHHHHHHH
Confidence            9 2   21111111   2 2456899999999998  3444999999 7999998875432  23456777777777777


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHc
Q 024997          139 KVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAA  217 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~  217 (259)
                      +.     .+.+.++.+++++++++.+.+.|++++              +... +..+.++|+.++.. +.+.+.+.|.++
T Consensus       291 ~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~  350 (399)
T 3tqx_A          291 EL-----LKTEGPQLRKQLQENSRYFRAGMEKLG--------------FQLV-PGNHPIIPVMLGDAQLATNMADHLLQE  350 (399)
T ss_dssp             HH-----HHHTHHHHHHHHHHHHHHHHHHHHHHT--------------CCBC-CCSSSEEEEEEECHHHHHHHHHHHHHT
T ss_pred             HH-----HhhccHHHHHHHHHHHHHHHHHHHHcC--------------CCcC-CCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence            74     214577889999999999999999764              3333 34456678877653 334444445568


Q ss_pred             CeeeecCCccc--CCCCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          218 KIIGREGKKFR--AEARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       218 gi~~~~g~~f~--~~~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      ||.++|+..+.  .+.+++|++++  .+++++++++++|++++++
T Consensus       351 gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  395 (399)
T 3tqx_A          351 GIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKK  395 (399)
T ss_dssp             TEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence            99999875543  24579999997  3899999999999998864

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.94  E-value=3.8e-26  Score=196.51  Aligned_cols=235  Identities=14%  Similarity=0.085  Sum_probs=166.4

Q ss_pred             CCCcccchhhh---hhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCC--cEEE
Q 024997            1 MPFYPLYQEQT---DYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPY--AKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~---~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~--~~vi   64 (259)
                      +|+|+.+...+   +..|.++.      .+.+|+++|++.++++++++++++|+||||.+++     ++|+++|  +++|
T Consensus        96 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li  175 (384)
T 1eg5_A           96 PIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVH  175 (384)
T ss_dssp             TTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEE
T ss_pred             CCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEE
Confidence            47788776665   45566542      2457889999999888999999999999999983     8899999  9999


Q ss_pred             eeccc-cCCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHH--HHHHHHh---hhhhcCCCCHHHHHHHHHHH
Q 024997           65 YDHAY-FWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAV--YQRMSAY---ISLNTMGVSRECQLRAFKLL  138 (259)
Q Consensus        65 ~De~y-~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~--~~~~~~~---~~~~~~~~~~~~q~~~~~~l  138 (259)
                      +||+| |+.....+. ..+.+++++|+||.+|.+|  +||+++++ ++  .+.+...   .......++.+.|.++..++
T Consensus       176 ~Dea~~~~~~~~~~~-~~~~di~~~s~sK~~g~~G--~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al  251 (384)
T 1eg5_A          176 VDAVQTIGKIPFSLE-KLEVDYASFSAHKFHGPKG--VGITYIRK-GVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAM  251 (384)
T ss_dssp             EECTTTTTTSCCCCT-TTCCSEEEEEGGGGTSCTT--CEEEEECT-TSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHH
T ss_pred             EEhhhhcCCcccCch-hcCCCEEEecHHHhcCCCc--eEEEEEcC-CCccccccccCcccccccCCCCChHHHHHHHHHH
Confidence            99998 432222222 2357899999999999889  79999994 65  2222111   11234567888998888888


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCC---CCeeEEEecCCCchHHHHHHHH
Q 024997          139 KVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPP---SPAYAWVKCEREEDKDCYGILK  215 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ll~  215 (259)
                      +.     ..+++++.+++++++++.+.+.|++. +             +....+.   .+.++++.++..+.+.+.+.|.
T Consensus       252 ~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~-g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (384)
T 1eg5_A          252 EI-----AVEELSEAAKHMEKLRSKLVSGLMNL-G-------------AHIITPLEISLPNTLSVSFPNIRGSTLQNLLS  312 (384)
T ss_dssp             HH-----HHHTHHHHHHHHHHHHHHHHHHHHTT-T-------------CEECSCTTSBCTTEEEEECTTCCHHHHHHHHH
T ss_pred             HH-----HHHhHHHHHHHHHHHHHHHHHHhCCC-C-------------eEEeCCcccCCCCEEEEEeCCCCHHHHHHHHh
Confidence            74     23467788899999999999999863 2             2222221   2345666665444555566667


Q ss_pred             HcCeeeecCCcccCC------------------CCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          216 AAKIIGREGKKFRAE------------------ARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       216 ~~gi~~~~g~~f~~~------------------~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      ++||.+++|..|+..                  .+++||+++  .+++++++++++|++++++
T Consensus       313 ~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  375 (384)
T 1eg5_A          313 GYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSF  375 (384)
T ss_dssp             HTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            899999999877531                  378999998  4899999999999998763

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.94  E-value=1.5e-25  Score=194.28  Aligned_cols=233  Identities=10%  Similarity=0.034  Sum_probs=175.3

Q ss_pred             CCCcccchhhhhhccCcccccc-cChhhhcccCCC------CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDYKFE-GEANLWGNASSD------THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~-~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~   68 (259)
                      +|+|+.+...++..|.++..+. .|+++|++.+++      +++++++++||||||.++     .++|+++|+++|+||+
T Consensus       136 ~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~  215 (401)
T 1fc4_A          136 ALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDS  215 (401)
T ss_dssp             TTCCHHHHHHHHTSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECT
T ss_pred             chhHHHHHHHHHHcCCceEEECCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECc
Confidence            4788777777777787765443 577888887743      689999999999999987     3899999999999999


Q ss_pred             c-cC---CCCCC----CCCCCCCeEEEecccccc-CCCcceEEEEEecCHHHHHHHHHhhh--hhcCCCCHHHHHHHHHH
Q 024997           69 Y-FW---PHFAP----IPAPADEELMIFTISKLT-GHAGSRFGWAVIKDEAVYQRMSAYIS--LNTMGVSRECQLRAFKL  137 (259)
Q Consensus        69 y-~~---~~~~~----~~~~~~~~i~~~S~SK~~-g~~G~R~G~i~~~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~  137 (259)
                      | .+   +....    ..-..+.+++++|+||.+ |.+|   ||++++ +++++.+.....  ..+.+++++.|.++...
T Consensus       216 ~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~g---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~  291 (401)
T 1fc4_A          216 HAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG---GYTAAR-KEVVEWLRQRSRPYLFSNSLAPAIVAASIKV  291 (401)
T ss_dssp             TTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC---EEEEEC-HHHHHHHHHHCHHHHHSCCCCHHHHHHHHHH
T ss_pred             ccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCC---EEEEcC-HHHHHHHHHhCcCceeCCCCCHHHHHHHHHH
Confidence            9 32   11111    111235689999999999 6666   999998 799998887542  23567889999999888


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHH
Q 024997          138 LKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKA  216 (259)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~  216 (259)
                      ++..     + ..++.+++++++++.+.+.|++++              +... +..+.++|++++.. +.+.+.+.|.+
T Consensus       292 l~~~-----~-~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~  350 (401)
T 1fc4_A          292 LEMV-----E-AGSELRDRLWANARQFREQMSAAG--------------FTLA-GADHAIIPVMLGDAVVAQKFARELQK  350 (401)
T ss_dssp             HHHH-----H-TCHHHHHHHHHHHHHHHHHHHHTT--------------CCBC-CSSSSEEEEEEECHHHHHHHHHHHHH
T ss_pred             HHHH-----h-cCHHHHHHHHHHHHHHHHHHHHcC--------------Cccc-CCCCCEEEEEcCChHHHHHHHHHHHH
Confidence            8742     1 135678889999999999998763              2223 45677889988642 33445555557


Q ss_pred             cCeeeecCCcccCC--CCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          217 AKIIGREGKKFRAE--ARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       217 ~gi~~~~g~~f~~~--~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      +||.+++|..|+.+  .+++||+++  .+++++++++++|++++++
T Consensus       351 ~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  396 (401)
T 1fc4_A          351 EGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQ  396 (401)
T ss_dssp             TTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            79999999877642  468999997  3899999999999998763

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.93  E-value=4.6e-25  Score=191.33  Aligned_cols=235  Identities=11%  Similarity=-0.013  Sum_probs=170.8

Q ss_pred             CCCcccchhhhhhccCccccccc-ChhhhcccCC----CCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEG-EANLWGNASS----DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~-d~~~l~~~~~----~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~   70 (259)
                      +|+|+.+...++..|.++..+.. |++.|++.++    ++++++++++|+||||.++     .++|+++|+++|+||+|.
T Consensus       139 ~~~~~~~~~~~~~~g~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~  218 (401)
T 2bwn_A          139 SLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHA  218 (401)
T ss_dssp             TTCCHHHHHHHHHSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTT
T ss_pred             chhhHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEecccc
Confidence            47888888888888877644433 5677777764    5789999999999999987     389999999999999992


Q ss_pred             ----CCCCCCCC---CC-CCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhh--hcCCCCHHHHHHHHHHHHH
Q 024997           71 ----WPHFAPIP---AP-ADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL--NTMGVSRECQLRAFKLLKV  140 (259)
Q Consensus        71 ----~~~~~~~~---~~-~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~  140 (259)
                          ++....+.   +. .+.+++++|+||.+|.+|   ||++++ +++++.+......  ...+.+++.|.++..+++.
T Consensus       219 ~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~  294 (401)
T 2bwn_A          219 VGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAAS-ARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAF  294 (401)
T ss_dssp             TTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEEC-HHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHH
T ss_pred             ccccCCCCceeeeccCccccCcEEEeechhhccCCC---CEEecC-HHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHH
Confidence                22222111   22 234799999999999888   999998 7999888764322  2344566788777777774


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-ch-HHHHHHHHHcC
Q 024997          141 VLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-ED-KDCYGILKAAK  218 (259)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~ll~~~g  218 (259)
                      .    ....+.+.+++++++++.+.+.|+++ +             +....+.++ ++|+.++.. +. ++...+++++|
T Consensus       295 ~----~~~~~~~~~~~~~~~~~~l~~~L~~~-g-------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~~g  355 (401)
T 2bwn_A          295 L----KTAEGQKLRDAQQMHAKVLKMRLKAL-G-------------MPIIDHGSH-IVPVVIGDPVHTKAVSDMLLSDYG  355 (401)
T ss_dssp             H----TSHHHHHHHHHHHHHHHHHHHHHHHH-T-------------CCBCCCSSS-CEEEECCCHHHHHHHHHHHHHHHC
T ss_pred             H----HhcccHHHHHHHHHHHHHHHHHHHHC-C-------------CcccCCCCC-eEEEEeCChHHHHHHHHHHHhcCC
Confidence            2    11124677888999999999999876 2             222344444 788888642 23 44445556789


Q ss_pred             eeeecCCcccCC--CCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          219 IIGREGKKFRAE--ARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       219 i~~~~g~~f~~~--~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      |.++|+..|+.+  .+++|+|++.  +++++++++++|++++++
T Consensus       356 i~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~  399 (401)
T 2bwn_A          356 VYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWAR  399 (401)
T ss_dssp             EECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred             EEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence            999999877643  3699999974  899999999999988753

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.93  E-value=4.3e-25  Score=192.15  Aligned_cols=235  Identities=16%  Similarity=0.129  Sum_probs=169.9

Q ss_pred             CCCccc----chhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEe
Q 024997            1 MPFYPL----YQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIY   65 (259)
Q Consensus         1 ~P~y~~----~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~   65 (259)
                      +|+|+.    |...++..|.++.      .+.+|+++|++.+++++++|++++|+||||.++     .++|+++|+++|+
T Consensus       125 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~  204 (420)
T 1t3i_A          125 VMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLV  204 (420)
T ss_dssp             TTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEE
T ss_pred             cchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCCCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEE
Confidence            477887    5566666676542      345888999999988899999999999999987     3899999999999


Q ss_pred             eccccCCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhh--------------------hcC
Q 024997           66 DHAYFWPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL--------------------NTM  124 (259)
Q Consensus        66 De~y~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~--------------------~~~  124 (259)
                      |++|..... .+. ...+.+++++|+||.+|.+|  +||++++ +++++.+......                    ...
T Consensus       205 D~a~~~~~~-~~~~~~~~~di~~~s~sK~~~~~g--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (420)
T 1t3i_A          205 DACQSAPHY-PLDVQLIDCDWLVASGHKMCAPTG--IGFLYGK-EEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEA  280 (420)
T ss_dssp             ECTTTTTTS-CCCHHHHTCSEEEEEGGGTTSCTT--CEEEEEC-HHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCC
T ss_pred             EhhhccCCc-cCchhhcCCCEEEEehhhhcCCCc--eEEEEEc-hHHHhhcCceecCCCccccccccccCCCCchhhccC
Confidence            999931111 111 12246899999999998888  9999999 6998887654321                    123


Q ss_pred             CCCHHHHHHHHH-HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCC------CCee
Q 024997          125 GVSRECQLRAFK-LLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPP------SPAY  197 (259)
Q Consensus       125 ~~~~~~q~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~  197 (259)
                      +.+++.|.++.. +++..    .+..+++.+++++++++.+.+.|+++++             +....+.      ++++
T Consensus       281 ~~~~~~~~~a~~~al~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~~g-------------~~~~~~~~~~~~~~~~~  343 (420)
T 1t3i_A          281 GTPAIAEAIALGAAVDYL----TDLGMENIHNYEVELTHYLWQGLGQIPQ-------------LRLYGPNPKHGDRAALA  343 (420)
T ss_dssp             SSCCHHHHHHHHHHHHHH----HHHCHHHHHHHHHHHHHHHHHHHHTCTT-------------EEEESCCGGGSCBCSEE
T ss_pred             CCccHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHhCCC-------------eEEeCCCccccccCCEE
Confidence            567777776554 44432    1123567788899999999999987643             3333443      4444


Q ss_pred             EEEecCCCchHHHHHHHHHcCeeeecCCcccC------C-CCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          198 AWVKCEREEDKDCYGILKAAKIIGREGKKFRA------E-ARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       198 ~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~------~-~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                       ++.++..+.+.+.+.|.++||.+++|..|..      + ++++||+++.  ++++++.++++|+++++
T Consensus       344 -~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~  411 (420)
T 1t3i_A          344 -SFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIR  411 (420)
T ss_dssp             -EEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             -EEEECCCCHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence             4466644455566777889999999965531      2 5899999985  88999999999998865

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.93  E-value=6e-25  Score=190.31  Aligned_cols=235  Identities=17%  Similarity=0.105  Sum_probs=168.7

Q ss_pred             CCCccc----chhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEe
Q 024997            1 MPFYPL----YQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIY   65 (259)
Q Consensus         1 ~P~y~~----~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~   65 (259)
                      +|+|+.    |...++..|.++.      .+.+|+++|++.+++++++|++++|+||||.++     .++|+++|+++|+
T Consensus       120 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~  199 (406)
T 1kmj_A          120 QMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLV  199 (406)
T ss_dssp             TTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEE
T ss_pred             cccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhccCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEE
Confidence            366554    3344555666542      345788999999988899999999999999987     3889999999999


Q ss_pred             eccccCCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh---------------------hhc
Q 024997           66 DHAYFWPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS---------------------LNT  123 (259)
Q Consensus        66 De~y~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~---------------------~~~  123 (259)
                      ||+|..... .+. ...+.+++++|+||.+|.+|  +||++++ +++++.+.....                     ...
T Consensus       200 D~~~~~g~~-~~~~~~~~~d~~~~s~~K~~g~~G--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (406)
T 1kmj_A          200 DGAQAVMHH-PVDVQALDCDFYVFSGHKLYGPTG--IGILYVK-EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFE  275 (406)
T ss_dssp             ECTTTTTTS-CCCHHHHTCSEEEEEGGGTTSCTT--CEEEEEC-HHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGC
T ss_pred             EchhhcCCC-CCcccccCCCEEEEEchhccCCCC--cEEEEEe-HHHHhhcCCcccCCCceeecccccccccCCCchhcc
Confidence            999931111 111 12256899999999999888  8999999 799888764331                     122


Q ss_pred             CCCCHHHHHHHH-HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCC--CCCeeEEE
Q 024997          124 MGVSRECQLRAF-KLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP--PSPAYAWV  200 (259)
Q Consensus       124 ~~~~~~~q~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  200 (259)
                      .+.+++.|.++. .+++..    .+..+++.+++++++++.+.+.|+++++             +....+  .++++.| 
T Consensus       276 ~~~~~~~~~~a~~~al~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------------~~~~~~~~~~~~~~~-  337 (406)
T 1kmj_A          276 AGTPNTGGIIGLGAALEYV----SALGLNNIAEYEQNLMHYALSQLESVPD-------------LTLYGPQNRLGVIAF-  337 (406)
T ss_dssp             CSSCCHHHHHHHHHHHHHH----HHHCHHHHHHHHHHHHHHHHHHHTTSTT-------------EEEESCTTCCSEEEE-
T ss_pred             CCCCCHHHHHHHHHHHHHH----HHcCHHHHHHHHHHHHHHHHHHHhcCCC-------------eEEecCCCcCCEEEE-
Confidence            445677777655 455532    1124567788888999999999987643             344455  5666555 


Q ss_pred             ecCCCchHHHHHHHHHcCeeeecCCcccC-------CCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          201 KCEREEDKDCYGILKAAKIIGREGKKFRA-------EARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       201 ~~~~~~~~~~~~ll~~~gi~~~~g~~f~~-------~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      .++..+.+.+.+.|.++||.+++|..|..       .++++||+++.  ++++++.+++.|+++++
T Consensus       338 ~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~  403 (406)
T 1kmj_A          338 NLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHR  403 (406)
T ss_dssp             EETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence            56544455556777788999999986531       25899999976  88999999999998875

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.92  E-value=5.5e-25  Score=189.73  Aligned_cols=232  Identities=12%  Similarity=-0.003  Sum_probs=170.5

Q ss_pred             CCCcccchhhhhhccCccccc-ccChhhhcccCCC---CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc-
Q 024997            1 MPFYPLYQEQTDYFESVDYKF-EGEANLWGNASSD---THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF-   70 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~-~~d~~~l~~~~~~---~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~-   70 (259)
                      +|+|+.+...++..|.++..+ ..|+++|++.+++   +++++++++||||||.++     .++|+++|+++|+||+|- 
T Consensus       130 ~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~  209 (384)
T 1bs0_A          130 RLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGT  209 (384)
T ss_dssp             TTCCHHHHHHHHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTT
T ss_pred             ccccHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCccc
Confidence            478888888888888776444 2577888887743   378989999999999998     389999999999999992 


Q ss_pred             C--C-CCCCCCC--CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhh--hcCCCCHHHHHHHHHHHHHHHh
Q 024997           71 W--P-HFAPIPA--PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL--NTMGVSRECQLRAFKLLKVVLE  143 (259)
Q Consensus        71 ~--~-~~~~~~~--~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~  143 (259)
                      +  . ....+..  ..+.+++++|+||.+|.+|   ||++++ +++++.+......  .+.+++++.|.++.+.++..  
T Consensus       210 ~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~--  283 (384)
T 1bs0_A          210 GVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG---AAVLCS-STVADYLLQFARHLIYSTSMPPAQAQALRASLAVI--  283 (384)
T ss_dssp             TTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC---EEEEEC-HHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH--
T ss_pred             ceecCCCCchHHhcCCCCcEEEeeccchhhccC---cEEEeC-HHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHH--
Confidence            1  1 1111111  1234699999999999878   999998 7999988775322  23367888888888888742  


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeee
Q 024997          144 DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGR  222 (259)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~  222 (259)
                        .+.+.++.+++++++++.+.+.|++++              +... +..+.++|+.++.. +.+.+.+.|.++||.++
T Consensus       284 --~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~  346 (384)
T 1bs0_A          284 --RSDEGDARREKLAALITRFRAGVQDLP--------------FTLA-DSCSAIQPLIVGDNSRALQLAEKLRQQGCWVT  346 (384)
T ss_dssp             --HSHHHHHHHHHHHHHHHHHHHHHTTSS--------------CEEC-SCCSSBCCEEEESHHHHHHHHHHHHHTTEECC
T ss_pred             --hccccHHHHHHHHHHHHHHHHHHHhcC--------------Cccc-CCCCCEEEEEeCCHHHHHHHHHHHHHCCcEEE
Confidence              111556778889999999999998753              2222 34566778887532 33444455556799999


Q ss_pred             cCCcccC--CCCeEEEEeec--ChhhHHHHHHHHHHH
Q 024997          223 EGKKFRA--EARFVRLSLLK--SQDDFDLLLHRLDEL  255 (259)
Q Consensus       223 ~g~~f~~--~~~~~Ris~~~--~~~~~~~~~~~l~~~  255 (259)
                      +|..|+.  +.+++||+++.  +++++++++++|+++
T Consensus       347 ~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          347 AIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             EECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             eecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            9987763  35799999975  899999999999875

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.92  E-value=4.3e-24  Score=188.65  Aligned_cols=243  Identities=13%  Similarity=0.110  Sum_probs=167.3

Q ss_pred             CCCcccchhh----hhhccCccccccc-ChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc
Q 024997            1 MPFYPLYQEQ----TDYFESVDYKFEG-EANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~~~~~~----~~~~g~~~~~~~~-d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~   70 (259)
                      +|+|+.|...    ++..|.++..+.. |+++|++.++++++++++++||||||.++     .++|+++|+++|+||+|.
T Consensus       178 ~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~  257 (464)
T 1ibj_A          178 DDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIM  257 (464)
T ss_dssp             SSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTT
T ss_pred             CCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCc
Confidence            4788888754    3455666543332 78889999988999999999999999997     389999999999999995


Q ss_pred             CCCC-CCCCCCCCCeEEEeccccccC-CCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcc
Q 024997           71 WPHF-APIPAPADEELMIFTISKLTG-HAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNN  148 (259)
Q Consensus        71 ~~~~-~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  148 (259)
                      .+.. .++  ..+.+++++|+||.++ ..|+|+||++++++++++.+.........+.+++.|+++.+.++.        
T Consensus       258 ~g~~~~~~--~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~--------  327 (464)
T 1ibj_A          258 SPVLSRPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT--------  327 (464)
T ss_dssp             CTTTCCGG--GTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTT--------
T ss_pred             ccccCChh--hcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhh--------
Confidence            3221 112  2467999999999886 459999999998558888888777655677889989888777762        


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCc---cccccccccccceeeCCC---CCeeEEEecCCCc-hHHHHHHHHHcCeee
Q 024997          149 IFEFGYNTMKKRWENLSKIISLSNRFS---LQEIAPQYCTYFKKIRPP---SPAYAWVKCEREE-DKDCYGILKAAKIIG  221 (259)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~ll~~~gi~~  221 (259)
                       ...+.+...++...+.+.+++.+.+.   ...+...  ..+....++   .|.+++++++..+ .+.+.+.|+..||.+
T Consensus       328 -~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~--p~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~L~~~gi~v  404 (464)
T 1ibj_A          328 -MALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDH--PGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAV  404 (464)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTS--TTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECS
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCC--cchHHHhccCCCCceEEEEEECCHHHHHHHHHhcCcceEee
Confidence             22234445555666667777654221   1222211  113333333   3557788885321 222334444579999


Q ss_pred             ecCC------------ccc----------CCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          222 REGK------------KFR----------AEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       222 ~~g~------------~f~----------~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ++|.            ++.          .+++++|+|++.  +++++++++|++++++
T Consensus       405 ~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--edi~~li~~L~~al~~  461 (464)
T 1ibj_A          405 SFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI--EDVDDLISDLDIAFKT  461 (464)
T ss_dssp             CCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--SCHHHHHHHHHHHHHS
T ss_pred             cCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CCHHHHHHHHHHHHhh
Confidence            9885            222          235799999987  8999999999998764

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.92  E-value=9.2e-25  Score=191.26  Aligned_cols=234  Identities=12%  Similarity=0.039  Sum_probs=173.6

Q ss_pred             CCCcccchhhhhhccCccccc-ccChhhhcccCCC----CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc
Q 024997            1 MPFYPLYQEQTDYFESVDYKF-EGEANLWGNASSD----THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~-~~d~~~l~~~~~~----~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~   70 (259)
                      +|+|+.+...++..|.++..+ ..|++.|++.+.+    ++++|++++|+||||.++     .++|+++|+++|+||+|-
T Consensus       155 ~~~h~~~~~~~~~~g~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~  234 (427)
T 2w8t_A          155 ADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHS  234 (427)
T ss_dssp             TTCCHHHHHHHHHSCSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTT
T ss_pred             CcccHHHHHHHHHcCCeeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCcc
Confidence            478888888888888776544 3688889888743    789999999999999987     389999999999999992


Q ss_pred             ----CCCCCCC---CC-CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh--hhcCCCCHHHHHHHHHHHHH
Q 024997           71 ----WPHFAPI---PA-PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS--LNTMGVSRECQLRAFKLLKV  140 (259)
Q Consensus        71 ----~~~~~~~---~~-~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~  140 (259)
                          ......+   .+ ..+.+++++||||.+|++|   ||++++ +++++.+.....  ..+...+++.+.++.++++.
T Consensus       235 ~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~g---G~v~~~-~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~  310 (427)
T 2w8t_A          235 MGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG---GFVVSN-HPKFEAVRLACRPYIFTASLPPSVVATATTSIRK  310 (427)
T ss_dssp             TTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSCC---EEEEEC-CTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHH
T ss_pred             ccccCCCCCchHhhcCCCcCCcEEEecchhhhccCC---CEEEeC-HHHHHHHHHhcccccccCCCCHHHHHHHHHHHHH
Confidence                2111111   12 2356999999999999888   999999 588888766522  22345667766666678874


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceee-CCCCCeeEEEecCCC-chHHHHHHHHHcC
Q 024997          141 VLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKI-RPPSPAYAWVKCERE-EDKDCYGILKAAK  218 (259)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~ll~~~g  218 (259)
                      .      ..+++.+++++++++.+.+.|++++              +... ++..+.++|+.++.. +...+.+.|.++|
T Consensus       311 ~------~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G  370 (427)
T 2w8t_A          311 L------MTAHEKRERLWSNARALHGGLKAMG--------------FRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGG  370 (427)
T ss_dssp             H------TSCHHHHHHHHHHHHHHHHHHHHHT--------------CEESCSSCCSSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred             H------hcCHHHHHHHHHHHHHHHHHHHHcC--------------CcccCCCCCCCEEEEEECCHHHHHHHHHHHHHCC
Confidence            2      1256778899999999999998763              3333 332556788888653 2333444445679


Q ss_pred             eeeecCCcccC--CCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          219 IIGREGKKFRA--EARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       219 i~~~~g~~f~~--~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      |.+.++..|+.  +.+++|++++.  +++++++++++|++++++
T Consensus       371 i~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~  414 (427)
T 2w8t_A          371 LYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRA  414 (427)
T ss_dssp             EECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999987764  34689999985  899999999999988753

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.92  E-value=4.7e-24  Score=183.39  Aligned_cols=233  Identities=7%  Similarity=-0.004  Sum_probs=164.7

Q ss_pred             CCccc--chhhhhhccCccc------ccccChhhhcccCCC-CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeec
Q 024997            2 PFYPL--YQEQTDYFESVDY------KFEGEANLWGNASSD-THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDH   67 (259)
Q Consensus         2 P~y~~--~~~~~~~~g~~~~------~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De   67 (259)
                      |+|+.  +...++..|.++.      .+.+|+++|++.+++ +++++++++|+||||.++     .++|+++|+++|+|+
T Consensus        85 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~  164 (384)
T 3zrp_A           85 NGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDG  164 (384)
T ss_dssp             SSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEEC
T ss_pred             CCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEEC
Confidence            55533  4455555676542      235788999998866 799999999999999987     389999999999999


Q ss_pred             ccc-CCCCCCCCCCCCCeEEEeccccccC-CCcceEEEEEecCHHHHHHH-------------HHhhhh---------hc
Q 024997           68 AYF-WPHFAPIPAPADEELMIFTISKLTG-HAGSRFGWAVIKDEAVYQRM-------------SAYISL---------NT  123 (259)
Q Consensus        68 ~y~-~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~i~~~~~~~~~~~-------------~~~~~~---------~~  123 (259)
                      +|- ......+ ...+.+++++|+||.++ .+|  +||++++ +++++.+             ......         ..
T Consensus       165 a~~~~~~~~~~-~~~~~d~~~~s~~K~~~~~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (384)
T 3zrp_A          165 VSSVGAEEVKA-EEWNVDVYLTASQKALGSAAG--LGLLLLS-PKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAY  240 (384)
T ss_dssp             TTTTTTSCCCT-TTTTCSEEEEETTSTTCCCSS--EEEEEEC-HHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCC
T ss_pred             cccccCccccc-cccCCCEEEecCcccccCCCc--eEEEEEC-HHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCc
Confidence            982 2111112 23356899999999874 455  9999999 6888877             222211         11


Q ss_pred             C-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCC----CCeeE
Q 024997          124 M-GVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPP----SPAYA  198 (259)
Q Consensus       124 ~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  198 (259)
                      . .++...+.++..+++..    .+..+++.+++++++++.+.+.|+++ +             +....+.    ++.++
T Consensus       241 ~g~~~~~~~~a~~~al~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~-g-------------~~~~~~~~~~~~~~~~  302 (384)
T 3zrp_A          241 FATPPVHVILQLAEAFRLI----EKEGIENRIKRHTMVASAIRAGLEAL-G-------------LEIVARRPESYSNTVT  302 (384)
T ss_dssp             SSCCCHHHHHHHHHHHHHH----HHHCHHHHHHHHHHHHHHHHHHHHHT-T-------------CCBSCSSGGGBCSSEE
T ss_pred             CCCCCHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHHC-C-------------CeEccCcccccCccEE
Confidence            1 44555555555666532    11236778889999999999999886 3             2222333    56778


Q ss_pred             EEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          199 WVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       199 ~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      |+.++..+.+.+.+.|.++||.+++|..+..  +++||++..  +++++++++++|++++++
T Consensus       303 ~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~--~~iRi~~~~~~~~e~i~~~~~~l~~~l~~  362 (384)
T 3zrp_A          303 GVILKVADPQKVLAGTVNEGVEFAPGVHPAF--KYFRIGHMGWVTPNDAIIAISVIERTLRK  362 (384)
T ss_dssp             EEECSSSCHHHHHHHHHTTTCCCEECCCTTC--CEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHCCEEEecCCCCCc--CEEEEeccccCCHHHHHHHHHHHHHHHHH
Confidence            8888765555566666677999999875443  899999864  889999999999998763

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.92  E-value=2.2e-24  Score=185.85  Aligned_cols=237  Identities=14%  Similarity=0.061  Sum_probs=156.4

Q ss_pred             CCCcccchh---hhhhccCcccccccChhhhcccCCCCceE-EEEcCCCCCCh-hhH-----HHhhcCCCcEEEeeccc-
Q 024997            1 MPFYPLYQE---QTDYFESVDYKFEGEANLWGNASSDTHLV-EFVTAPNNPDG-QMN-----KAVLKGPYAKSIYDHAY-   69 (259)
Q Consensus         1 ~P~y~~~~~---~~~~~g~~~~~~~~d~~~l~~~~~~~~~~-i~i~~p~NPtG-~~~-----~~la~~~~~~vi~De~y-   69 (259)
                      +|+|+.+..   .++..|.++..+ .|+++|++. ++++++ +++++|||||| ...     .++|+++|+++|+||+| 
T Consensus       105 ~~~y~~~~~~~~~~~~~g~~~~~v-~d~~~l~~~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~  182 (374)
T 2aeu_A          105 LPELPGHPSIERSCKIVNAKYFES-DKVGEILNK-IDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASG  182 (374)
T ss_dssp             CSSSSCCTHHHHHHHHTTCEEEEE-SCHHHHHTT-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTH
T ss_pred             cCCCCccHHHHHHHHHcCcEEEEe-CCHHHHHhc-CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcc
Confidence            477777655   455567776555 789999988 778999 99999999999 554     38899999999999998 


Q ss_pred             -cC--CCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCC
Q 024997           70 -FW--PHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGG  146 (259)
Q Consensus        70 -~~--~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~  146 (259)
                       +.  +.........+.+++++|+||.+  +|+|+||++++ +++++.+.........+++++.|.++...++.     .
T Consensus       183 ~~~~~~~~~~~~~~~~~di~~~S~sK~l--~g~~~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~-----~  254 (374)
T 2aeu_A          183 ARVRLLFNQPPALKLGADLVVTSTDKLM--EGPRGGLLAGK-KELVDKIYIEGTKFGLEAQPPLLAGIYRALKN-----F  254 (374)
T ss_dssp             HHHHHHTTCCCHHHHTCSEEEEETTSSS--SSCSCEEEEEE-HHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHH-----C
T ss_pred             cccccccccCCccccCCcEEEecCcccc--cCcceEEEEEC-HHHHHHHHHhhccccCCCCHHHHHHHHHHHHH-----H
Confidence             21  11110011123478999999996  47899999999 69999998877655567889999998888884     2


Q ss_pred             cchHHHHHHHHHHHHHHH----HHHHHh-cCCCcccccccccccccee-eCCCCCeeEEEecCCC-c----hHHHHHHHH
Q 024997          147 NNIFEFGYNTMKKRWENL----SKIISL-SNRFSLQEIAPQYCTYFKK-IRPPSPAYAWVKCERE-E----DKDCYGILK  215 (259)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~----~~~l~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~----~~~~~~ll~  215 (259)
                      ..   +..+++.++++.+    .+.|.+ ++.+.    ...   .+.+ ..+.+.++.|.+.... +    .+++..+++
T Consensus       255 ~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~----~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ll~  324 (374)
T 2aeu_A          255 NL---ERIRKAFERAKNFDLSKIEKLNKELKAID----DNI---NIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLK  324 (374)
T ss_dssp             CH---HHHHHHHHHHHHCCCHHHHHHHHHHTTTC----TTE---EEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             hH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhh----hcc---CcceeeCCceEEEEeecccccccccchHHHHHHHHH
Confidence            11   1223333333333    333332 11100    000   0233 2455555666655421 1    125567888


Q ss_pred             HcCeeeecCCcccCCCCeEEEEeec-Ch--hhHHHHHHHHHHHhh
Q 024997          216 AAKIIGREGKKFRAEARFVRLSLLK-SQ--DDFDLLLHRLDELIS  257 (259)
Q Consensus       216 ~~gi~~~~g~~f~~~~~~~Ris~~~-~~--~~~~~~~~~l~~~l~  257 (259)
                      ++||.++||..|..+.+++||+++. +.  .+++.+.+.+++.++
T Consensus       325 ~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~  369 (374)
T 2aeu_A          325 NYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIK  369 (374)
T ss_dssp             HHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHH
T ss_pred             hCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHH
Confidence            8999999998886556799999975 32  236777777776665

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.91  E-value=1.5e-23  Score=178.35  Aligned_cols=230  Identities=11%  Similarity=-0.025  Sum_probs=160.7

Q ss_pred             CCcccch--hhhhhccCcccc------cccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCC--CcEEEee
Q 024997            2 PFYPLYQ--EQTDYFESVDYK------FEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGP--YAKSIYD   66 (259)
Q Consensus         2 P~y~~~~--~~~~~~g~~~~~------~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~--~~~vi~D   66 (259)
                      |+|+.+.  ..++..|.++..      +.+|+++|++   ++++++++++|+||||.++     .++|+++  |+++|+|
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D  159 (352)
T 1iug_A           83 YGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAK---EGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGAD  159 (352)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCC---SSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEE
T ss_pred             CCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhc---cCCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEE
Confidence            6677764  333445665522      3467777776   6788999999999999997     3889999  9999999


Q ss_pred             ccc-cCCCCCCCCCCCCCeEEEecccc-ccCCCcceEEEEEecCHHHHHH---------HHH----h-hhhhcCCCCHHH
Q 024997           67 HAY-FWPHFAPIPAPADEELMIFTISK-LTGHAGSRFGWAVIKDEAVYQR---------MSA----Y-ISLNTMGVSREC  130 (259)
Q Consensus        67 e~y-~~~~~~~~~~~~~~~i~~~S~SK-~~g~~G~R~G~i~~~~~~~~~~---------~~~----~-~~~~~~~~~~~~  130 (259)
                      ++| ++.....+ ...+.+++++|+|| .+|.+|  +||++++ +++++.         +..    . .......++...
T Consensus       160 ~a~~~~~~~~~~-~~~~~d~~~~s~~K~~~~~~g--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (352)
T 1iug_A          160 MVTSLLVGEVAL-EAMGVDAAASGSQKGLMCPPG--LGFVALS-PRALERLKPRGYYLDLARELKAQKEGESAWTPAINL  235 (352)
T ss_dssp             CTTTBTTBCCCS-GGGTCSEEEEESSSTTCCCSC--EEEEEEC-HHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHH
T ss_pred             CCccccCcceec-cccCeeEEEecCcccccCCCc--eeEEEEC-HHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHH
Confidence            998 32111111 12246789999999 555455  8999998 577654         221    1 112234566777


Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCC-CCeeEEEecCC-CchH
Q 024997          131 QLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPP-SPAYAWVKCER-EEDK  208 (259)
Q Consensus       131 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~  208 (259)
                      +.++..+++..     ..++++.+++++++++.+.+.|+++ +             +....+. .+.++|+.++. .+.+
T Consensus       236 ~~a~~~al~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~-g-------------~~~~~~~~~~~~~~~~~~~~~~~~  296 (352)
T 1iug_A          236 VLAVAAVLEEV-----LPRLEEHLALKAWQNALLYGVGEEG-G-------------LRPVPKRFSPAVAAFYLPEGVPYA  296 (352)
T ss_dssp             HHHHHHHHHHH-----GGGHHHHHHHHHHHHHHHHHHHHHT-T-------------CEESCSSBCTTCEEEECCTTCCHH
T ss_pred             HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHC-C-------------CcccccccCCeEEEEEcCCCCCHH
Confidence            77777777642     2337788899999999999999876 3             3333443 67788988873 3444


Q ss_pred             HHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          209 DCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       209 ~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      .+.+.|.++||.+++|.... ..+++||+++.  +++++++++++|++++++
T Consensus       297 ~~~~~l~~~gi~v~~~~~~~-~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  347 (352)
T 1iug_A          297 RVKEAFAQRGAVIAGGQGPL-KGKVFRLSLMGAYDRYEALGVAGMFREVLEE  347 (352)
T ss_dssp             HHHHHHHTTTEECEECCGGG-TTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCEEEEeCCCcc-CCCEEEEEccccCCHHHHHHHHHHHHHHHHH
Confidence            55555667799999988432 45899999975  789999999999988753

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.91  E-value=4.5e-24  Score=183.95  Aligned_cols=231  Identities=13%  Similarity=0.059  Sum_probs=162.3

Q ss_pred             CCCcccchhh----hhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhc----CC
Q 024997            1 MPFYPLYQEQ----TDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLK----GP   59 (259)
Q Consensus         1 ~P~y~~~~~~----~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~----~~   59 (259)
                      +|+|+.+...    ++..|.++.        .+.+|++.|++.++++++++++++|+||||.++     .++|+    ++
T Consensus       108 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~  187 (390)
T 1elu_A          108 DCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNY  187 (390)
T ss_dssp             TTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSS
T ss_pred             cCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCceecCHHHHHHHHhhhhhhc
Confidence            4788887653    344566542        345778899999988899999999999999987     38899    99


Q ss_pred             CcEEEeeccc-cCCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhh-------------------
Q 024997           60 YAKSIYDHAY-FWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI-------------------  119 (259)
Q Consensus        60 ~~~vi~De~y-~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~-------------------  119 (259)
                      |+++|+||+| ++.....+ ...+.+++++|+||.++ .|.++||++++ +++++.+....                   
T Consensus       188 ~~~li~Dea~~~g~~~~~~-~~~~~d~~~~s~~K~~~-~~~g~G~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  264 (390)
T 1elu_A          188 PVRVLVDGAQSAGSLPLDF-SRLEVDYYAFTGHKWFA-GPAGVGGLYIH-GDCLGEINPTYVGWRSITYGAKGEPTGWAE  264 (390)
T ss_dssp             CCEEEEECTTTBTTBCCCT-TTSCCSEEEEESSSTTC-CCTTCEEEEEC-TTTGGGCCCCSCCTTTEEECTTSCEEEECS
T ss_pred             CcEEEEEcccccCCcCCCh-hhcCCCEEEcccccccc-CCCceEEEEEC-HHhHhhcCCccccCCcccccccCccccccc
Confidence            9999999999 32111112 23356899999999432 45669999999 58877665421                   


Q ss_pred             ---hhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceee---CCC
Q 024997          120 ---SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKI---RPP  193 (259)
Q Consensus       120 ---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~  193 (259)
                         ......++.+.|.++..+++...   ..+++++.+++++++++.+.+.|+++++             +...   .+.
T Consensus       265 ~~~~~~~~~~~~~~~~a~~~al~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~~g-------------~~~~~~~~~~  328 (390)
T 1elu_A          265 GGKRFEVATSAYPQYAGLLAALQLHQ---RQGTAEERYQAICQRSEFLWRGLNQLPH-------------VHCLATSAPQ  328 (390)
T ss_dssp             GGGGGCCSCCCHHHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHHHHSTT-------------EEESCSSCCS
T ss_pred             chHhhCCCCCCHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHhcCC-------------cEEecCcccc
Confidence               11223456676776666665431   1235778899999999999999998643             2223   234


Q ss_pred             CCeeEEEecC-CCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHHHHHHHHHH
Q 024997          194 SPAYAWVKCE-REEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDLLLHRLDEL  255 (259)
Q Consensus       194 ~~~~~~~~~~-~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~~~~~l~~~  255 (259)
                      ++++.| +++ ..+.+.+.+.|.++||.+++|.    +++++|||++  .+++++++++++|+++
T Consensus       329 ~~~~~~-~~~~~~~~~~~~~~l~~~gi~v~~~~----~~~~iRis~~~~~~~~~i~~~~~~l~~~  388 (390)
T 1elu_A          329 AGLVSF-TVDSPLGHRAIVQKLEEQRIYLRTIA----DPDCIRACCHYITDEEEINHLLARLADF  388 (390)
T ss_dssp             SSEEEE-EECSSSCHHHHHHHHHHTTEECEEET----TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             ccEEEE-EcCCCCCHHHHHHHHHHCCEEEEecC----CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence            555544 774 3344445555568899999976    3589999985  4899999999998764

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.91  E-value=3.3e-23  Score=176.72  Aligned_cols=224  Identities=13%  Similarity=0.036  Sum_probs=160.2

Q ss_pred             hhhhccCcc------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCC-CcEEEeeccc-cCCCCCC
Q 024997           10 QTDYFESVD------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGP-YAKSIYDHAY-FWPHFAP   76 (259)
Q Consensus        10 ~~~~~g~~~------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~-~~~vi~De~y-~~~~~~~   76 (259)
                      .++..|.++      ..+.+|+++|+  ++++++++++++||||||.+++     ++|+++ |+++|+|++| +....  
T Consensus       101 ~~~~~g~~~~~v~~~~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~--  176 (362)
T 3ffr_A          101 FAGELGREAYKEEAAFGKGFYPADIT--VPADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPK--  176 (362)
T ss_dssp             HHHHTTCEEEEEECCTTCCCCGGGCC--CCTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSC--
T ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHh--ccCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcc--
Confidence            444556554      23577888888  7788999999999999999983     789999 9999999998 21111  


Q ss_pred             CCCCCCCeEEEeccccccC-CCcceEEEEEecCHHHHHHHHHhhh---------------------hhcCCCCHHHHHHH
Q 024997           77 IPAPADEELMIFTISKLTG-HAGSRFGWAVIKDEAVYQRMSAYIS---------------------LNTMGVSRECQLRA  134 (259)
Q Consensus        77 ~~~~~~~~i~~~S~SK~~g-~~G~R~G~i~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~q~~~  134 (259)
                      . +..+.+++++|+||.++ .+|  +|+++++ +++++.+.....                     .....++...+.++
T Consensus       177 ~-~~~~~d~~~~s~~K~~~~~~G--~g~~~~~-~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (362)
T 3ffr_A          177 F-DWTKIDSVFFSVQKCFGLPAG--LGVWILN-DRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLL  252 (362)
T ss_dssp             C-CTTSCSEEEEETTSTTCCCSC--CEEEEEE-HHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHH
T ss_pred             c-ChhHCcEEEEecccccCCCCc--eEEEEEC-HHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHH
Confidence            1 11225789999999998 788  5778888 688888876543                     01345666767666


Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHH
Q 024997          135 FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGIL  214 (259)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  214 (259)
                      ..+++...+    ..+++.+++++++++.+.+.|++++++.+.  .+       .....++..+|+.++. +.+.+.+.|
T Consensus       253 ~~al~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~-------~~~~~~~~~~~~~~~~-~~~~~~~~l  318 (362)
T 3ffr_A          253 GKVTGDMLQ----ISADGIRKQTEEKAALINTYIESSKVFSFG--VE-------DAKLRSMTTIVANTTM-LPGEINKIL  318 (362)
T ss_dssp             HHHHHHHHH----HCHHHHHHHHHHHHHHHHHHHHHCSSEEES--SS-------CGGGBCSSEEEEEESS-CHHHHHHHH
T ss_pred             HHHHHHHHH----ccHHHHHHHHHHHHHHHHHHHHHccCceec--cC-------ChhhcCCceEEEecCC-CHHHHHHHH
Confidence            666663211    126778889999999999999987543221  00       0012346677888876 555566666


Q ss_pred             HHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHh
Q 024997          215 KAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       215 ~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l  256 (259)
                      .++||.+++|..+. +++++|||++.  ++++++.+++.|++++
T Consensus       319 ~~~gi~~~~g~~~~-~~~~iRis~~~~~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          319 EPFDMAVGAGYGSK-KETQIRIANFPAHSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             GGGTEEEEECSGGG-TTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHCCeEEecCcccc-CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            67799999986543 35899999975  8899999999998875

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.91  E-value=4.8e-24  Score=183.29  Aligned_cols=232  Identities=14%  Similarity=0.084  Sum_probs=161.4

Q ss_pred             CCCcccchhhhhh---ccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEee
Q 024997            1 MPFYPLYQEQTDY---FESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYD   66 (259)
Q Consensus         1 ~P~y~~~~~~~~~---~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~D   66 (259)
                      +|+|+.+...+..   .|.++.      .+.+|+++|++.++++++++++++|+||||.++     .++|+++|++ |+|
T Consensus        95 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D  173 (382)
T 4eb5_A           95 AVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HID  173 (382)
T ss_dssp             TTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEE
T ss_pred             CCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEE
Confidence            4778877766654   465542      234788999999988899999999999999987     3899999999 999


Q ss_pred             ccc-cCCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHh-------hhhhcCCCCHHHHHHHHHHH
Q 024997           67 HAY-FWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAY-------ISLNTMGVSRECQLRAFKLL  138 (259)
Q Consensus        67 e~y-~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l  138 (259)
                      ++| ++.....+ ...+.+++++|+||.+|.+|  +||+++++ +.  .+...       .......++...+.++..++
T Consensus       174 ~a~~~g~~~~~~-~~~~~di~~~s~sK~~g~~g--~G~~~~~~-~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al  247 (382)
T 4eb5_A          174 ATASVGQIEVDV-EKIGADMLTISSNDIYGPKG--VGALWIRK-EA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAA  247 (382)
T ss_dssp             CTTTBTTBCCCH-HHHTCSEEEEETGGGTCCSS--CEEEEEET-TC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHH
T ss_pred             cchhcCCcccCc-cccCCCEEEeehHHhcCCCc--eEEEEEcc-cc--ccCceecCCCccccccCCCccHHHHHHHHHHH
Confidence            999 32111111 11246799999999988777  79999885 52  11111       11122344556666666666


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCC---CCeeEEEecCCCchHHHHHHHH
Q 024997          139 KVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPP---SPAYAWVKCEREEDKDCYGILK  215 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ll~  215 (259)
                      +..     .+.+++.+++++++++.+.+.|+++++             +....+.   .+.++++.++..+.+.+.+.|.
T Consensus       248 ~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  309 (382)
T 4eb5_A          248 EIT-----AMEWREEAERLRRLRDRIIDNVLKIEE-------------SYLNGHPEKRLPNNVNVRFSYIEGESIVLSLD  309 (382)
T ss_dssp             HHH-----HHHHHHHHHHHHHHHHHHHHHHTTSTT-------------EEECSCSSSBCTTEEEEEETTSCHHHHHHHHH
T ss_pred             HHH-----HHhHHHHHHHHHHHHHHHHHHHhhCCC-------------eEEeCCcccCCCCEEEEEeCCcCHHHHHHHHH
Confidence            632     224677788889999999999987643             2222332   2446677776444555555666


Q ss_pred             HcCeeeecCCcccC------------------CCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          216 AAKIIGREGKKFRA------------------EARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       216 ~~gi~~~~g~~f~~------------------~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      ++||.+++|..|..                  +.+++||+++.  +++++++++++|+++++
T Consensus       310 ~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (382)
T 4eb5_A          310 MAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIE  371 (382)
T ss_dssp             HHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            78999999986543                  15799999984  89999999999998875

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.91  E-value=7.2e-24  Score=180.96  Aligned_cols=232  Identities=14%  Similarity=0.057  Sum_probs=164.8

Q ss_pred             CCccc-chhhhhhccCccc------ccccChhhhcccCCC--CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeec
Q 024997            2 PFYPL-YQEQTDYFESVDY------KFEGEANLWGNASSD--THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDH   67 (259)
Q Consensus         2 P~y~~-~~~~~~~~g~~~~------~~~~d~~~l~~~~~~--~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De   67 (259)
                      |+|+. |...++..|.++.      .+.+|+++|++.+++  +++++++++|+||||.++     .++|+++|+++|+||
T Consensus        89 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De  168 (366)
T 1m32_A           89 GAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDA  168 (366)
T ss_dssp             SHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEEC
T ss_pred             CCccHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEC
Confidence            34443 5555666676652      235788889988843  578889999999999987     389999999999999


Q ss_pred             ccc-CCCCCCCCCCCCCeEEEecccccc-CCCcceEEEEEecCHHHHHHHHHhh---------------h---hhcCCCC
Q 024997           68 AYF-WPHFAPIPAPADEELMIFTISKLT-GHAGSRFGWAVIKDEAVYQRMSAYI---------------S---LNTMGVS  127 (259)
Q Consensus        68 ~y~-~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~i~~~~~~~~~~~~~~~---------------~---~~~~~~~  127 (259)
                      +|. +.....+ ...+.+++++|+||.+ |..|  +||++++ +++++.+....               .   .....++
T Consensus       169 a~~~~~~~~~~-~~~~~di~~~s~~K~~~~~~g--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (366)
T 1m32_A          169 MSSFGGIPMDI-AALHIDYLISSANKCIQGVPG--FAFVIAR-EQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSP  244 (366)
T ss_dssp             TTTTTTSCCCT-TTTTCSEEEEESSSTTCCCSS--EEEEEEE-HHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCC
T ss_pred             CccccCcCccc-cccCccEEEecCcccccCCCc--eEEEEEC-HHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCC
Confidence            993 2111122 2234689999999976 5445  7999999 68877654321               0   0024567


Q ss_pred             HHHHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeC---CCCCeeEEEec
Q 024997          128 RECQLRAFKLLKVVLEDGGNNI--FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIR---PPSPAYAWVKC  202 (259)
Q Consensus       128 ~~~q~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  202 (259)
                      ...+.++.++++..     ..+  +++.+++++++++.+.+.|+++ ++             ....   +.+++++|+.+
T Consensus       245 ~~~~~a~~~al~~~-----~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~-------------~~~~~~~~~~~~~~~~~~  305 (366)
T 1m32_A          245 THTVLAFAQALKEL-----AKEGGVAARHQRYQQNQRSLVAGMRAL-GF-------------NTLLDDELHSPIITAFYS  305 (366)
T ss_dssp             HHHHHHHHHHHHHH-----HHHTHHHHHHHHHHHHHHHHHHHHHHT-TC-------------CBSSCGGGBCSSEEEEEC
T ss_pred             HHHHHHHHHHHHHH-----HHccCHhHHHHHHHHHHHHHHHHHHHC-CC-------------eeccCchhcCceEEEEEc
Confidence            77777777777642     122  5677889999999999999876 32             1122   24677889988


Q ss_pred             CC---CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          203 ER---EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       203 ~~---~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      +.   .+.+.+.+.|.++||.+++|..|.  ++++|++++.  +++++++++++|++++++
T Consensus       306 ~~~~~~~~~~~~~~l~~~gi~v~~~~~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  364 (366)
T 1m32_A          306 PEDPQYRFSEFYRRLKEQGFVIYPGKVSQ--SDCFRIGNIGEVYAADITALLTAIRTAMYW  364 (366)
T ss_dssp             CCCTTCCHHHHHHHHHHTTEECEECCCSS--SCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred             CccCCCCHHHHHHHHHHCCEEEECCcCCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            73   344555555667799999998773  5899999975  789999999999998753

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.91  E-value=3.9e-23  Score=179.31  Aligned_cols=240  Identities=10%  Similarity=0.072  Sum_probs=162.6

Q ss_pred             CCCcccchhhh----hhccCcccccc-cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc
Q 024997            1 MPFYPLYQEQT----DYFESVDYKFE-GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~~~~~~~----~~~g~~~~~~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~   70 (259)
                      +|+|+.+...+    +..|.++..+. .|+++|++.++++++++++++|+||||.++     .++|+++|+++|+||+|.
T Consensus       110 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~  189 (398)
T 2rfv_A          110 SAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFM  189 (398)
T ss_dssp             SSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred             CCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCc
Confidence            47888877766    55676654333 278889999988999999999999999998     389999999999999993


Q ss_pred             CCCCCCCCCCCCCeEEEeccccccCCCcceE-EEEEecCHHHHH-HHHHhhhhh-cCCCCHHHHHHHHHHHHHHHhcCCc
Q 024997           71 WPHFAPIPAPADEELMIFTISKLTGHAGSRF-GWAVIKDEAVYQ-RMSAYISLN-TMGVSRECQLRAFKLLKVVLEDGGN  147 (259)
Q Consensus        71 ~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~-G~i~~~~~~~~~-~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~  147 (259)
                      ...... +...+.++++.|+||.++.+|+|+ ||++++ +++++ .+....... +.+.+++.|.++.+.++.       
T Consensus       190 ~~~~~~-~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------  260 (398)
T 2rfv_A          190 SPYCQQ-PLQLGADIVVHSVTKYINGHGDVIGGIIVGK-QEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT-------  260 (398)
T ss_dssp             CTTTCC-GGGGTCSEEEEETTTTTTCSSCCCCEEEEEC-HHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT-------
T ss_pred             ccccCC-chhhCCcEEEEeCcccccCCCCceEEEEEEC-HHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhh-------
Confidence            111111 112357899999999998899999 999999 68877 666655554 567888889888888762       


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCCCcc---ccccccccccceeeCC---CCCeeEEEecCCCchHHHHHHHHHc---C
Q 024997          148 NIFEFGYNTMKKRWENLSKIISLSNRFSL---QEIAPQYCTYFKKIRP---PSPAYAWVKCEREEDKDCYGILKAA---K  218 (259)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~---g  218 (259)
                        ...+.+...++...+.+.|++.+.+..   ..+..  ...+....+   ..+.+++++++.. .+....++++.   |
T Consensus       261 --~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~--~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~l~~~~~~~~  335 (398)
T 2rfv_A          261 --LGIRMERHCENALKIARFLEGHPSITRVYYPGLSS--HPQYELGQRQMSLPGGIISFEIAGG-LEAGRRMINSVELCL  335 (398)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTT--STTHHHHHHHCSSCCSEEEEEETTH-HHHHHHHHTTCSSSE
T ss_pred             --HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCC--CccHHHHHhhCCCCceEEEEEEcCC-HHHHHHHHHhCCcce
Confidence              233456677788888888887643211   11111  001222222   2344555577642 23445555544   8


Q ss_pred             eeeecCCccc----------------------CCCCeEEEEeec--ChhhHHHHHHHHHH
Q 024997          219 IIGREGKKFR----------------------AEARFVRLSLLK--SQDDFDLLLHRLDE  254 (259)
Q Consensus       219 i~~~~g~~f~----------------------~~~~~~Ris~~~--~~~~~~~~~~~l~~  254 (259)
                      +.+.+|..|.                      ..++.+|||++.  ++++++.+.+.|++
T Consensus       336 i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~  395 (398)
T 2rfv_A          336 LAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK  395 (398)
T ss_dssp             ECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence            8888886541                      126899999987  45556666666654

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.91  E-value=4.5e-24  Score=181.37  Aligned_cols=234  Identities=11%  Similarity=-0.005  Sum_probs=162.8

Q ss_pred             CCcccc--hhhhhhccCccc------ccccChhhhcccCCC-CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeec
Q 024997            2 PFYPLY--QEQTDYFESVDY------KFEGEANLWGNASSD-THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDH   67 (259)
Q Consensus         2 P~y~~~--~~~~~~~g~~~~------~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De   67 (259)
                      |+|+.+  ...++..|.++.      .+.+|+++|++.+++ +++++++++|+||||.++     .++|+++|+++|+|+
T Consensus        82 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~  161 (353)
T 2yrr_A           82 NGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDA  161 (353)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEc
Confidence            556654  344455676652      235788889988866 789999999999999987     388999999999999


Q ss_pred             cc-cCCCCCCCCCCCCCeEEEecccccc-CCCcceEEEEEecCHHHHHHHHH-------------h--hhhhcCCCCHHH
Q 024997           68 AY-FWPHFAPIPAPADEELMIFTISKLT-GHAGSRFGWAVIKDEAVYQRMSA-------------Y--ISLNTMGVSREC  130 (259)
Q Consensus        68 ~y-~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~i~~~~~~~~~~~~~-------------~--~~~~~~~~~~~~  130 (259)
                      +| ++.....+ ...+.++++.|++|.+ |.+|  +||++++ +++++.+..             .  .......++...
T Consensus       162 a~~~~~~~~~~-~~~~~d~~~~s~~K~~~~~~g--~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (353)
T 2yrr_A          162 VTTLGMLPFSM-RAMGVDYAFTGSQKCLSAPPG--LAPIAAS-LEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLL  237 (353)
T ss_dssp             TTTTTTSCCCH-HHHTCSEEECCTTSTTCCCSS--CEEEEEC-HHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHH
T ss_pred             Ccccccccccc-cccCceEEEecCcccccCCCc--eEEEEEC-HHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHH
Confidence            99 32111111 1123478899999954 5577  6999999 688876641             0  111223456677


Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCC--CCeeEEEecC-CCch
Q 024997          131 QLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPP--SPAYAWVKCE-REED  207 (259)
Q Consensus       131 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~  207 (259)
                      +.++..+++...    +..+++.+++++++++.+.+.|+++ +             ++...+.  +++++|+.++ ..+.
T Consensus       238 ~~a~~~al~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g-------------~~~~~~~~~~~~~~~~~~~~~~~~  299 (353)
T 2yrr_A          238 HYALLEALDLVL----EEGVAARERRAREVYAWVLEELKAR-G-------------FRPYPKASPLPTVLVVRPPEGVDA  299 (353)
T ss_dssp             HHHHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHHHHHT-T-------------CEESCSSSBCTTEEEEECCTTCCH
T ss_pred             HHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHC-C-------------CccccCccCCCeEEEEECCCCCCH
Confidence            776666666421    1126677889999999999999875 3             2222332  5666788885 3344


Q ss_pred             HHHHHHHHHcCeeeecCCcccCCCCeEEEEee-c-ChhhHH-HHHHHHHHHhhh
Q 024997          208 KDCYGILKAAKIIGREGKKFRAEARFVRLSLL-K-SQDDFD-LLLHRLDELISK  258 (259)
Q Consensus       208 ~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~-~-~~~~~~-~~~~~l~~~l~~  258 (259)
                      +.+.+.|.++||.+++|..|.. ++++|+|+. . ++++++ +++++|+++++.
T Consensus       300 ~~~~~~l~~~gi~v~~g~~~~~-~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~  352 (353)
T 2yrr_A          300 DRLVRALYAEGVAVAGGIGPTR-GQVLRLGLMGEGARREAYQAFLKALDRALAL  352 (353)
T ss_dssp             HHHHHHHHHTTEECEECCGGGT-TTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCEEEeCCccccC-CCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence            5555566677999999987654 478999994 3 888888 999999998764

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.91  E-value=1.7e-23  Score=180.68  Aligned_cols=234  Identities=11%  Similarity=-0.030  Sum_probs=162.5

Q ss_pred             CCcccch--hhhhhccCcccc------cccChhhhcccCCC-CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeec
Q 024997            2 PFYPLYQ--EQTDYFESVDYK------FEGEANLWGNASSD-THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDH   67 (259)
Q Consensus         2 P~y~~~~--~~~~~~g~~~~~------~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De   67 (259)
                      |+|+.+.  ..++..|..+..      +.+|+++|++.+++ ++++|++++|+||||.++     .++|+++|+++|+|+
T Consensus       102 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~  181 (393)
T 2huf_A          102 TGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDT  181 (393)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEEC
T ss_pred             CCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEc
Confidence            6666642  233445665422      35788889988876 889999999999999987     389999999999999


Q ss_pred             cc-cCCCCCCCCCCCCCeEEEeccccc-cCCCcceEEEEEecCHHHHHHHHHhh---hh-------------------hc
Q 024997           68 AY-FWPHFAPIPAPADEELMIFTISKL-TGHAGSRFGWAVIKDEAVYQRMSAYI---SL-------------------NT  123 (259)
Q Consensus        68 ~y-~~~~~~~~~~~~~~~i~~~S~SK~-~g~~G~R~G~i~~~~~~~~~~~~~~~---~~-------------------~~  123 (259)
                      ++ ++.....+ ...+.++++.|+||. +|.+|+  ||++++ +++++.+....   ..                   ..
T Consensus       182 a~~~~~~~~~~-~~~~~d~~~~s~sK~l~g~~G~--G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (393)
T 2huf_A          182 VASLGGAPMFM-DRWEIDAMYTGSQKVLGAPPGI--TPVSFS-HRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIY  257 (393)
T ss_dssp             TTTBTTBCCCT-TTTTCSEEECCSSSTTCCCSSC--EEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCC
T ss_pred             ccccCCCCcch-hhcCccEEEECCCcccccCCCe--EEEEEC-HHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCC
Confidence            98 32211122 233578999999996 567886  999999 79999887541   00                   01


Q ss_pred             -CCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCC---CCCeeEE
Q 024997          124 -MGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP---PSPAYAW  199 (259)
Q Consensus       124 -~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  199 (259)
                       ..++...+.++..+++...    +..+.+.+++++++++.+.+.|+++ ++             ....+   .++.+++
T Consensus       258 ~~~~~~~~~~a~~~al~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~-------------~~~~~~~~~~~~~~~  319 (393)
T 2huf_A          258 HHTISSTLLYGLREAIAMAC----EEGLPALIARHEDCAKRLYRGLQDA-GF-------------ELYADPKDRLSTVTT  319 (393)
T ss_dssp             SCCCCHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHHHHHT-TC-------------CBSSCGGGBCTTEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHH----HhCHHHHHHHHHHHHHHHHHHHHHc-CC-------------eeccCccccCCcEEE
Confidence             2345555555555666421    1136677888999999999999876 32             22222   2455777


Q ss_pred             EecC-CCch-HHHHHHHHHcCeeeecCCcccCCCCeEEEEe-ec--ChhhHHHHHHHHHHHhhh
Q 024997          200 VKCE-REED-KDCYGILKAAKIIGREGKKFRAEARFVRLSL-LK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       200 ~~~~-~~~~-~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~-~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      +.++ ..+. ++...+++++||.+++|..+.. .+++||++ +.  +++++++++++|++++++
T Consensus       320 ~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~-~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~  382 (393)
T 2huf_A          320 IKVPQGVDWLKAAQYAMKTYLVEISGGLGPTA-GQVFRIGLMGQNATTERVDRVLQVFQEAVAA  382 (393)
T ss_dssp             EECCTTCCHHHHHHHHHHHHCEECBCCCGGGT-TTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHHhCCEEEecCccccc-CCEEEEEcccCcCCHHHHHHHHHHHHHHHHH
Confidence            8775 3333 4455555567999999887643 58999999 53  678899999999988753

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.91  E-value=1.4e-23  Score=182.03  Aligned_cols=230  Identities=15%  Similarity=0.063  Sum_probs=163.8

Q ss_pred             CCCcccchhhhhhccCcc----------cccc----cChhhhcccCCCCceEEEEcCCCCCChhhH----------HHhh
Q 024997            1 MPFYPLYQEQTDYFESVD----------YKFE----GEANLWGNASSDTHLVEFVTAPNNPDGQMN----------KAVL   56 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~----------~~~~----~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~----------~~la   56 (259)
                      +|+|+.+...+...+...          .++.    .|+++|++.+++++++++++ |+||||.++          .++|
T Consensus       135 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~  213 (406)
T 4adb_A          135 KNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALIDDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELC  213 (406)
T ss_dssp             TTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHTTCSTTEEEEEEC-SEETTTTSEECCHHHHHHHHHHH
T ss_pred             CCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHHHhcCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHH
Confidence            578888866655554421          1122    57889999998889997777 999999854          2889


Q ss_pred             cCCCcEEEeeccc--cCCCCCCCC----CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHH
Q 024997           57 KGPYAKSIYDHAY--FWPHFAPIP----APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSREC  130 (259)
Q Consensus        57 ~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (259)
                      +++|+++|+||+|  |......+.    +....++   ||||.++ +|+|+||++++ +++++.+.......+++.+++.
T Consensus       214 ~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~---t~sK~~~-~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~  288 (406)
T 4adb_A          214 NRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLL---TTAKALG-GGFPVGALLAT-EECARVMTVGTHGTTYGGNPLA  288 (406)
T ss_dssp             HHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE---EECGGGG-TTSCCEEEEEC-HHHHHTCCTTSSCCSSTTCHHH
T ss_pred             HHcCCEEEEeccccCCCccchhHHHHhcCCCCCEE---Eechhhc-CCCCeEEEEEc-HHHHhhhccCCcCCCCCCCHHH
Confidence            9999999999999  321111111    2223333   7899999 99999999999 7999888776666678899999


Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---ch
Q 024997          131 QLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---ED  207 (259)
Q Consensus       131 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  207 (259)
                      |.++.++++..    . .  ++..++++++++.+.+.|+.+..    .+.     .+.. .+..|.++|+.++..   +.
T Consensus       289 ~~a~~~~l~~~----~-~--~~~~~~~~~~~~~l~~~l~~~~~----~~~-----~~~~-~~~~g~~~~~~~~~~~~~~~  351 (406)
T 4adb_A          289 SAVAGKVLELI----N-T--PEMLNGVKQRHDWFVERLNTINH----RYG-----LFSE-VRGLGLLIGCVLNADYAGQA  351 (406)
T ss_dssp             HHHHHHHHHHH----S-S--HHHHHHHHHHHHHHHHHHHHHHH----HHC-----CEEE-EEEETTEEEEEECTTTTTCH
T ss_pred             HHHHHHHHHHH----H-h--cCHHHHHHHHHHHHHHHHHHHHH----hCC-----CceE-EEEEEEEEEEEEeCCcHHHH
Confidence            99999988853    1 1  45678888888888888876531    000     0111 223467788887653   24


Q ss_pred             HHHHHHHHHcCeeeecCCcccCCCCeEEEEe--ecChhhHHHHHHHHHHHhhh
Q 024997          208 KDCYGILKAAKIIGREGKKFRAEARFVRLSL--LKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       208 ~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~--~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +.+.+.|.++||.++|+.     .+++|+++  ..+++++++++++|++++++
T Consensus       352 ~~~~~~l~~~gi~v~~~~-----~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~  399 (406)
T 4adb_A          352 KQISQEAAKAGVMVLIAG-----GNVVRFAPALNVSEEEVTTGLDRFAAACEH  399 (406)
T ss_dssp             HHHHHHHHHTTEECEESS-----TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCcEEeecC-----CCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            445555556799999843     58999965  44899999999999998753

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.91  E-value=6.1e-24  Score=183.74  Aligned_cols=207  Identities=13%  Similarity=0.094  Sum_probs=151.5

Q ss_pred             ChhhhcccCCCCceEEEEcCCCCCChhhHH---------HhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEeccc
Q 024997           24 EANLWGNASSDTHLVEFVTAPNNPDGQMNK---------AVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFTIS   91 (259)
Q Consensus        24 d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~---------~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~S   91 (259)
                      |+++|++.++++++++++++|+||||.+++         ++|+++|+++|+||+|  |........ ...+....+.|+|
T Consensus       171 d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~S  250 (392)
T 3ruy_A          171 DLEALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILG  250 (392)
T ss_dssp             CHHHHHHHCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC
T ss_pred             cHHHHHHHhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEEEc
Confidence            788999999989999999999999999872         7899999999999999  322111111 1111111134789


Q ss_pred             cccCCCc-ceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh
Q 024997           92 KLTGHAG-SRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISL  170 (259)
Q Consensus        92 K~~g~~G-~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  170 (259)
                      |.++ .| +|+||++++ +++++.+.......+++++++.|.++.++++..     + . ++.+++++++++.+.+.|++
T Consensus       251 K~l~-gG~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~-~-~~~~~~~~~~~~~l~~~L~~  321 (392)
T 3ruy_A          251 KALG-GGVFPISCAAAN-RDILGVFEPGSHGSTFGGNPLACAVSIAALEVL-----E-E-EKLTERSLQLGEKLVGQLKE  321 (392)
T ss_dssp             GGGG-TTTSCCEEEEEC-HHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHH-----H-H-TTHHHHHHHHHHHHHHHHTT
T ss_pred             hhhh-CChhhhEEEEEC-HHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHH-----H-h-hhHHHHHHHHHHHHHHHHHH
Confidence            9986 47 999999999 699888877666667889999999999998853     1 1 45678888999999999886


Q ss_pred             cCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHHH
Q 024997          171 SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDLL  248 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~~  248 (259)
                      ++.           ..+....+.++ ++++.++. +.+.+.+.|.++||.++||.     ++++|+++.  .++++++++
T Consensus       322 ~~~-----------~~~~~~~~~g~-~~~~~~~~-~~~~l~~~l~~~gi~v~~~~-----~~~iRi~~~~~~~~~~i~~~  383 (392)
T 3ruy_A          322 IDN-----------PMITEVRGKGL-FIGIELNE-PARPYCEQLKAAGLLCKETH-----ENVIRIAPPLVISEEDLEWA  383 (392)
T ss_dssp             CCC-----------TTEEEEEEETT-EEEEEESS-CSHHHHHHHHTTTEECCCBT-----TTEEEECCCTTCCHHHHHHH
T ss_pred             hcC-----------CCceEEEeeee-EEEEEEcc-hHHHHHHHHHHCCcEEecCC-----CCEEEEECCCCCCHHHHHHH
Confidence            531           11333344444 44555665 34445555557899999854     589999954  489999999


Q ss_pred             HHHHHHHhh
Q 024997          249 LHRLDELIS  257 (259)
Q Consensus       249 ~~~l~~~l~  257 (259)
                      +++|+++++
T Consensus       384 ~~~l~~~l~  392 (392)
T 3ruy_A          384 FQKIKAVLS  392 (392)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999998863

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.91  E-value=9e-24  Score=181.26  Aligned_cols=232  Identities=15%  Similarity=0.103  Sum_probs=159.3

Q ss_pred             CCCcccchhhhhhc---cCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEee
Q 024997            1 MPFYPLYQEQTDYF---ESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYD   66 (259)
Q Consensus         1 ~P~y~~~~~~~~~~---g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~D   66 (259)
                      +|.|+.+...+...   |.++.      .+.+|+++|++.++++++++++++||||||.++     .++|+++|+ +|+|
T Consensus        95 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D  173 (382)
T 4hvk_A           95 AVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHID  173 (382)
T ss_dssp             TTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEE
T ss_pred             CCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEE
Confidence            46788877766553   55542      345789999999998999999999999999987     389999999 9999


Q ss_pred             ccccCCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhh-------hhhcCCCCHHHHHHHHHHH
Q 024997           67 HAYFWPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI-------SLNTMGVSRECQLRAFKLL  138 (259)
Q Consensus        67 e~y~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~q~~~~~~l  138 (259)
                      ++|..+ ..... ...+.+++++|+||.+|.+|  +|++++++ +.  .+....       ......++...+.++..++
T Consensus       174 ~a~~~~-~~~~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al  247 (382)
T 4hvk_A          174 ATASVG-QIEVDVEKIGADMLTISSNDIYGPKG--VGALWIRK-EA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAA  247 (382)
T ss_dssp             CTTTBT-TBCCCHHHHTCSEEEEESGGGTSCTT--CEEEEEET-TC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHH
T ss_pred             hHHhcC-CCCCCchhcCCCEEEEeHHHhcCCCc--eEEEEEcC-cc--CcCcccccCCCcCccccCCcCHHHHHHHHHHH
Confidence            988211 11111 12245799999999988777  67777763 43  121111       1112334566666666666


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCC---CeeEEEecCCCchHHHHHHHH
Q 024997          139 KVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPS---PAYAWVKCEREEDKDCYGILK  215 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ll~  215 (259)
                      +.     ...++++.+++++++++.+.+.|+++++             +....+++   +.++++.++..+.+.+.+.|.
T Consensus       248 ~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  309 (382)
T 4hvk_A          248 EI-----TAMEWREEAERLRRLRDRIIDNVLKIEE-------------SYLNGHPEKRLPNNVNVRFSYIEGESIVLSLD  309 (382)
T ss_dssp             HH-----HHHHHHHHHHHHHHHHHHHHHHHTTSTT-------------EEECSCSSSBCTTEEEEEETTCCHHHHHHHHH
T ss_pred             HH-----HHhhHHHHHHHHHHHHHHHHHHHhcCCC-------------eEEeCCccccCCCEEEEEECCCCHHHHHHHHH
Confidence            53     2246777888999999999999987654             22223222   345666666555666667777


Q ss_pred             HcCeeeecCCcccCC------------------CCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          216 AAKIIGREGKKFRAE------------------ARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       216 ~~gi~~~~g~~f~~~------------------~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      ++||.+++|..|...                  .+++||+++.  +++++++++++|+++++
T Consensus       310 ~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~  371 (382)
T 4hvk_A          310 MAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIE  371 (382)
T ss_dssp             HTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            889999999877642                  5899999974  78999999999998875

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.91  E-value=1.7e-23  Score=180.93  Aligned_cols=235  Identities=9%  Similarity=-0.038  Sum_probs=165.1

Q ss_pred             CCCcccch--hhhhhccCccc------ccccChhhhcccCCC-CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEee
Q 024997            1 MPFYPLYQ--EQTDYFESVDY------KFEGEANLWGNASSD-THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYD   66 (259)
Q Consensus         1 ~P~y~~~~--~~~~~~g~~~~------~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~D   66 (259)
                      +|+|+.|.  ..++..|.++.      .+.+|+++|++.+++ ++++|++++|+||||.++     .++|+++|+++|+|
T Consensus       100 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D  179 (396)
T 2ch1_A          100 VNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVD  179 (396)
T ss_dssp             ESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEE
T ss_pred             cCCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEE
Confidence            47888884  35666777652      245888899988876 789999999999999998     38999999999999


Q ss_pred             ccc-cCCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhh-----------------------hhh
Q 024997           67 HAY-FWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI-----------------------SLN  122 (259)
Q Consensus        67 e~y-~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~-----------------------~~~  122 (259)
                      |+| ++.....+ ...+..+++.|++|.++ .+.++|+++++ +++++.+....                       ...
T Consensus       180 ea~~~g~~~~~~-~~~~~d~~~~s~~K~~~-~~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (396)
T 2ch1_A          180 AVASLCGVPFYM-DKWEIDAVYTGAQKVLG-APPGITPISIS-PKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRY  256 (396)
T ss_dssp             CTTTBTTBCCCT-TTTTCCEEECCCC-CCC-CCSSCEEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCC
T ss_pred             ccccccCCccch-hhcCcCEEEEcCCcccc-CCCCeEEEEEC-HHHHHhhhhccCcccceEechHHHHHhhhhhcccCCC
Confidence            999 33111112 22234677899999764 22346999998 68888775420                       111


Q ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCC----CeeE
Q 024997          123 TMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPS----PAYA  198 (259)
Q Consensus       123 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  198 (259)
                      ...++...|.++..+++..    .+..+++.+++++++++.+.+.|+++ ++             ....+.+    +.++
T Consensus       257 ~~~~~~~~~~a~~~al~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-------------~~~~~~~~~~~~~~~  318 (396)
T 2ch1_A          257 HHTVASNLIFALREALAQI----AEEGLENQIKRRIECAQILYEGLGKM-GL-------------DIFVKDPRHRLPTVT  318 (396)
T ss_dssp             CCCCCHHHHHHHHHHHHHH----HHHCHHHHHHHHHHHHHHHHHHHHHH-TC-------------CBSSCSGGGBCTTEE
T ss_pred             CCCCcHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHC-CC-------------eeccCCccccCCceE
Confidence            2346777888877787742    12356778889999999999999876 32             2223322    3477


Q ss_pred             EEecCC-Cch-HHHHHHHHHcCeeeecCCcccCCCCeEEEEe-ec--ChhhHHHHHHHHHHHhh
Q 024997          199 WVKCER-EED-KDCYGILKAAKIIGREGKKFRAEARFVRLSL-LK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       199 ~~~~~~-~~~-~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~-~~--~~~~~~~~~~~l~~~l~  257 (259)
                      ++.++. .+. ++...+++++||.+++|..+.. ++++||++ +.  +++++++++++|+++++
T Consensus       319 ~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~-~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~  381 (396)
T 2ch1_A          319 GIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTF-GKAWRVGIMGECSTVQKIQFYLYGFKESLK  381 (396)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGT-TTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHHHhCCEEEecCccccC-CCEEEEECCCCcCCHHHHHHHHHHHHHHHH
Confidence            887752 333 4455555556999999875543 58999999 42  78899999999998875

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.91  E-value=6.1e-24  Score=185.35  Aligned_cols=233  Identities=13%  Similarity=0.066  Sum_probs=164.2

Q ss_pred             CCCcccchhhhhhc---cCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEee
Q 024997            1 MPFYPLYQEQTDYF---ESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYD   66 (259)
Q Consensus         1 ~P~y~~~~~~~~~~---g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~D   66 (259)
                      +|+|+.+...+...   |.++.      .+.+|+++|++.++++++++++++|+||||.++     .++|+++|+++|+|
T Consensus       120 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D  199 (423)
T 3lvm_A          120 KTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVD  199 (423)
T ss_dssp             TTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEE
T ss_pred             CccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEE
Confidence            47888887777544   66542      345688999999988999999999999999998     38999999999999


Q ss_pred             ccccCCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh-------hhcCCCCHHHHHHHHHHH
Q 024997           67 HAYFWPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS-------LNTMGVSRECQLRAFKLL  138 (259)
Q Consensus        67 e~y~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~q~~~~~~l  138 (259)
                      |+|..... ... ...+.+++++|+||.+|.+|  +||+++++ ++.+.+.....       ......+...+.++..++
T Consensus       200 ea~~~~~~-~~~~~~~~~di~~~s~sK~~g~~g--~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al  275 (423)
T 3lvm_A          200 ATQSVGKL-PIDLSQLKVDLMSFSGHKIYGPKG--IGALYVRR-KPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAY  275 (423)
T ss_dssp             CTTTTTTS-CCCTTTSCCSEEEEESTTTTSCSS--CEEEEECB-TTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHH
T ss_pred             hhhhcCCC-CcChhhcCCCEEEechHHhcCCCC--eEEEEEec-cccCCCCccccCCcccccccCCCCCHHHHHHHHHHH
Confidence            99832111 111 23356899999999988777  89999984 66655544321       123345666666665666


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCC---CeeEEEecCCCchHHHHHHHH
Q 024997          139 KVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPS---PAYAWVKCEREEDKDCYGILK  215 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ll~  215 (259)
                      +..     ...+++.+++++++++.+.+.|+++++             +....+.+   +.++++.++..+.+.+.+.|.
T Consensus       276 ~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  337 (423)
T 3lvm_A          276 RIA-----KEEMATEMERLRGLRNRLWNGIKDIEE-------------VYLNGDLEHGAPNILNVSFNYVEGESLIMALK  337 (423)
T ss_dssp             HHH-----HHHHHHHHHHHHHHHHHHHHHHTTSTT-------------EEEESCSTTBCTTEEEEEETTSCHHHHHHHTT
T ss_pred             HHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCC-------------EEEeCCccccCCCeEEEEeCCCCHHHHHHHHh
Confidence            532     234677888999999999999987654             33333332   334555555555566666665


Q ss_pred             HcCeeeecCCcccCC------------------CCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          216 AAKIIGREGKKFRAE------------------ARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       216 ~~gi~~~~g~~f~~~------------------~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      +  |.+++|..|...                  .+++||+++.  +++++++++++|+++++
T Consensus       338 ~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~  397 (423)
T 3lvm_A          338 D--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIG  397 (423)
T ss_dssp             T--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             h--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            5  999999776531                  4899999975  78999999999998875

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.91  E-value=1.8e-23  Score=179.59  Aligned_cols=221  Identities=11%  Similarity=0.013  Sum_probs=159.8

Q ss_pred             CCCcccchhhhhhccCcc----------cccc----cChhhhcccCCCCceEEEEcCCCCCChhhH---------HHhhc
Q 024997            1 MPFYPLYQEQTDYFESVD----------YKFE----GEANLWGNASSDTHLVEFVTAPNNPDGQMN---------KAVLK   57 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~----------~~~~----~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~---------~~la~   57 (259)
                      +|+|+.+...+...+...          .++.    .|+++|++.++++++++++++|+||||.++         .++|+
T Consensus       124 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~  203 (375)
T 2eh6_A          124 ENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICK  203 (375)
T ss_dssp             BTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHHHHHTTCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHH
T ss_pred             CCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCchHHHHHHHhcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHH
Confidence            478888877665543221          0122    588899999988899999999999999983         27899


Q ss_pred             CCCcEEEeeccc--cCCCC--CCCC--CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHH
Q 024997           58 GPYAKSIYDHAY--FWPHF--APIP--APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQ  131 (259)
Q Consensus        58 ~~~~~vi~De~y--~~~~~--~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q  131 (259)
                      ++|+++|+||+|  |....  ..+.  +.... ++  ||||.++ +|+|+||++++ +++++.+.......+++.+++.|
T Consensus       204 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d-~~--s~SK~~~-~g~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  278 (375)
T 2eh6_A          204 EKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPD-VI--ALAKGLG-GGVPIGAILAR-EEVAQSFTPGSHGSTFGGNPLAC  278 (375)
T ss_dssp             HHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS-EE--EECGGGG-TTSCCEEEEEE-HHHHTTCCTTSCCCSSTTCHHHH
T ss_pred             HhCCEEEEeccccCCCCCCcchhhhhcCCCCC-EE--EEccccc-CCCCeEEEEEc-HHHHhhhcCCCCCCCCCCCHHHH
Confidence            999999999999  32111  1111  11122 22  8899998 79999999999 68888776533334567889999


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHH
Q 024997          132 LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCY  211 (259)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (259)
                      .++.++++..         .+..++++++++.+.+.|++++.              .. .+..|.++|++++....++..
T Consensus       279 ~~~~~~l~~~---------~~~~~~~~~~~~~l~~~L~~~~~--------------~~-~~~~g~~~~~~~~~~~~~~~~  334 (375)
T 2eh6_A          279 RAGTVVVDEV---------EKLLPHVREVGNYFKEKLKELGK--------------GK-VKGRGLMLGLELERECKDYVL  334 (375)
T ss_dssp             HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHTTS--------------SE-EEEETTEEEEECSSCCHHHHH
T ss_pred             HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhc--------------CC-ceEEEEEEEEEEcCcHHHHHH
Confidence            9888888742         15677888899999999987542              11 223567889988753344555


Q ss_pred             HHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHHHHHHHHHHh
Q 024997          212 GILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDLLLHRLDELI  256 (259)
Q Consensus       212 ~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~~~~~l~~~l  256 (259)
                      .+ .++||.++|+     +++++|++++  .+++++++++++|++++
T Consensus       335 ~l-~~~gi~~~~~-----~~~~iRi~~~~~~~~~~i~~~~~~l~~~l  375 (375)
T 2eh6_A          335 KA-LEKGLLINCT-----AGKVLRFLPPLIIQKEHIDRAISVLREIL  375 (375)
T ss_dssp             HH-HHTTEECEEE-----TTTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred             HH-HHCCCEEecC-----CCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            54 4689999985     2589999976  38999999999998764

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.90  E-value=5.3e-23  Score=173.92  Aligned_cols=239  Identities=10%  Similarity=0.046  Sum_probs=163.7

Q ss_pred             CCCcccchhhhh----hccCcccccc-cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcC-CCcEEEeeccc
Q 024997            1 MPFYPLYQEQTD----YFESVDYKFE-GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKG-PYAKSIYDHAY   69 (259)
Q Consensus         1 ~P~y~~~~~~~~----~~g~~~~~~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~-~~~~vi~De~y   69 (259)
                      +|+|+.+...+.    ..|.++..+. .|++.|++.++++++++++++||||||.++     .++|++ +|+++|+|++|
T Consensus        44 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~  123 (331)
T 1pff_A           44 DCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTF  123 (331)
T ss_dssp             SCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTT
T ss_pred             CCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCC
Confidence            478887766653    3566553332 578889999988899999999999999998     389999 99999999999


Q ss_pred             cCCC-CCCCCCCCCCeEEEeccccccCCCcce-EEEEEecCH-HHHHHHHHhhhh-hcCCCCHHHHHHHHHHHHHHHhcC
Q 024997           70 FWPH-FAPIPAPADEELMIFTISKLTGHAGSR-FGWAVIKDE-AVYQRMSAYISL-NTMGVSRECQLRAFKLLKVVLEDG  145 (259)
Q Consensus        70 ~~~~-~~~~~~~~~~~i~~~S~SK~~g~~G~R-~G~i~~~~~-~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~  145 (259)
                      .... ..++  ..+.+++++|+||.++.+|.| +||++++ + ++++.+...... .+...+++.++++...++      
T Consensus       124 ~~~~~~~~~--~~~~d~~~~s~~K~~~~~~~r~~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~------  194 (331)
T 1pff_A          124 ASPILTNPL--DLGVDIVVHSATKYINGHTDVVAGLVCSR-ADIIAKVKSQGIKDITGAIISPHDAWLITRGTL------  194 (331)
T ss_dssp             THHHHCCGG--GGTCSEEEEETTTTTSSSSSCCCEEEEEC-HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHH------
T ss_pred             cccccCChh--hcCCcEEEEECccccCCCCCceEEEEEeC-cHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcc------
Confidence            2100 0111  245789999999999999999 7999998 6 899988877665 456778888877666665      


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhcCCCccc---cccccccccceeeC---CCCCeeEEEecCCCchHHHHHHHHHcCe
Q 024997          146 GNNIFEFGYNTMKKRWENLSKIISLSNRFSLQ---EIAPQYCTYFKKIR---PPSPAYAWVKCEREEDKDCYGILKAAKI  219 (259)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~gi  219 (259)
                         ......+...++.+.+.+.+++...+...   .+.+.  ..+....   ...+.++.+.+.  +.+.+..+++++||
T Consensus       195 ---~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gI  267 (331)
T 1pff_A          195 ---TLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDH--PGHEIAKKQMKMFGSMIAFDVD--GLEKAKKVLDNCHV  267 (331)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTS--TTHHHHHHHCSSCCSEEEEECS--SHHHHHHHHHTCSS
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCC--ccHHHHHhhCCCCceEEEEEEC--CHHHHHHHHHhCCC
Confidence               23344566777777787887765432211   11110  0111111   123455666665  45667788888999


Q ss_pred             eeecCC---------c----------------ccCCCCeEEEEeec--ChhhHHHHHHHHHHH
Q 024997          220 IGREGK---------K----------------FRAEARFVRLSLLK--SQDDFDLLLHRLDEL  255 (259)
Q Consensus       220 ~~~~g~---------~----------------f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~  255 (259)
                      .+++.+         +                ++.+++.+|+|++.  ++++++.+++.|+++
T Consensus       268 ~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~  330 (331)
T 1pff_A          268 VSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             SEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred             ceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence            876652         1                12235899999976  556677777777654

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.90  E-value=1.2e-23  Score=181.39  Aligned_cols=229  Identities=12%  Similarity=0.083  Sum_probs=165.2

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCC-CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSD-THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~   68 (259)
                      +|+|+.|...++..|.++.      .+.+|+++|++.+++ +++++++++|+||||.+.     .++|+++|+++|+||+
T Consensus       130 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea  209 (397)
T 3f9t_A          130 ITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAA  209 (397)
T ss_dssp             TTCCTHHHHHHHHHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECT
T ss_pred             CcchhHHHHHHHHcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEcc
Confidence            5899999999998887652      345788999999877 889999999999999987     3899999999999999


Q ss_pred             c--c----CCCCC-------CCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhc-----------
Q 024997           69 Y--F----WPHFA-------PIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNT-----------  123 (259)
Q Consensus        69 y--~----~~~~~-------~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~-----------  123 (259)
                      |  +    .....       .+. .. +.++++.|++|.++ +|.|+|++++.++.+.+.+........           
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (397)
T 3f9t_A          210 FGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGH-CPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTR  287 (397)
T ss_dssp             TGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTC-CCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSC
T ss_pred             ccchhhhhcccccccccccccccccc-cCCeEEEccccccC-CCCCceEEEEeCHHHHHhhccCCccccCCCcccccccc
Confidence            9  1    11100       111 22 56889999999875 788999999876555554432221111           


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecC
Q 024997          124 MGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCE  203 (259)
Q Consensus       124 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (259)
                      .+.+...+.++...+..       ..+.+..++++++++.+.+.|+++ +             +....+..+.++++.++
T Consensus       288 ~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~-g-------------~~~~~~~~~~~~~~~~~  346 (397)
T 3f9t_A          288 VGFGGACTYAVLRYLGR-------EGQRKIVNECMENTLYLYKKLKEN-N-------------FKPVIEPILNIVAIEDE  346 (397)
T ss_dssp             CSHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT-T-------------CCBSSCCSSSEEEEECT
T ss_pred             ccchHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHC-C-------------CEEEcCCCccEEEEEeC
Confidence            12245566666665542       356777888899999999999976 3             22234455667777776


Q ss_pred             CCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          204 REEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       204 ~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      .  .+.+.+.|.++||.+++|..    ++++||+++.  +++++++++++|++++++
T Consensus       347 ~--~~~~~~~l~~~gi~v~~~~~----~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~~  397 (397)
T 3f9t_A          347 D--YKEVCKKLRDRGIYVSVCNC----VKALRIVVMPHIKREHIDNFIEILNSIKRD  397 (397)
T ss_dssp             T--HHHHHHHHHHTTCBCEECSS----SSEEEEECCTTCCHHHHHHHHHHHHHHC--
T ss_pred             C--HHHHHHHHHhCCeEEeccCC----CCEEEEEEcCCCCHHHHHHHHHHHHHhhCC
Confidence            4  44455555677999999653    4899999974  899999999999998753

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.90  E-value=2.1e-22  Score=175.06  Aligned_cols=242  Identities=12%  Similarity=0.083  Sum_probs=162.1

Q ss_pred             CCCcccchh----hhhhccCccccccc-ChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCC-cEEEeeccc
Q 024997            1 MPFYPLYQE----QTDYFESVDYKFEG-EANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPY-AKSIYDHAY   69 (259)
Q Consensus         1 ~P~y~~~~~----~~~~~g~~~~~~~~-d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~-~~vi~De~y   69 (259)
                      +|+|+....    .++..|.++..+.. |+++|++.+++++++|++++|+||||.++     .++|+++| +++|+|++|
T Consensus       112 ~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~  191 (403)
T 3cog_A          112 DDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTF  191 (403)
T ss_dssp             SSCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTT
T ss_pred             CCCcchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCC
Confidence            467765333    23445666544433 78889999988999999999999999998     38999999 999999999


Q ss_pred             cCCC-CCCCCCCCCCeEEEeccccccCCCc-ceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCc
Q 024997           70 FWPH-FAPIPAPADEELMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGN  147 (259)
Q Consensus        70 ~~~~-~~~~~~~~~~~i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~  147 (259)
                      ..+. ..++  ..+.+++++|+||.++.+| +|+||++++++++++.+.......+...+++.++++.+.++        
T Consensus       192 ~~~~~~~~~--~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~--------  261 (403)
T 3cog_A          192 MSPYFQRPL--ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLK--------  261 (403)
T ss_dssp             TCTTTCCTT--TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT--------
T ss_pred             cccccCCcc--ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh--------
Confidence            3211 1122  2357899999999998665 58999999646899988887776667788888888777776        


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCCCccc---cccccccccceeeC----CCCCeeEEEecCCCchHHHHHHHHHcCee
Q 024997          148 NIFEFGYNTMKKRWENLSKIISLSNRFSLQ---EIAPQYCTYFKKIR----PPSPAYAWVKCEREEDKDCYGILKAAKII  220 (259)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ll~~~gi~  220 (259)
                       .+..+.++..++...+.+.+++.+.+...   .+...  ..+....    ..++++.| .++.. .+...+++++.||.
T Consensus       262 -~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~--p~~~~~~~~~~~~g~~~~~-~l~~~-~~~~~~~l~~~~i~  336 (403)
T 3cog_A          262 -TLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSH--PQHELVKRQCTGCTGMVTF-YIKGT-LQHAEIFLKNLKLF  336 (403)
T ss_dssp             -THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTS--TTHHHHHHHCSCCCSEEEE-EESSC-HHHHHHHHHHCSSS
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCC--CcHHHHHhcCCCCceEEEE-EecCC-HHHHHHHHHhCCcc
Confidence             23445677778888888888876532211   12221  0122122    23566655 56543 35677788888886


Q ss_pred             eec---CC----------c--c----------cCCCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          221 GRE---GK----------K--F----------RAEARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       221 ~~~---g~----------~--f----------~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      ++.   |.          .  .          +.+++++|||++.  +++.++.+.+.|+++++
T Consensus       337 ~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~~  400 (403)
T 3cog_A          337 TLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAHP  400 (403)
T ss_dssp             EECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHCC
T ss_pred             eEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhhc
Confidence            542   21          1  1          2236899999987  33445555555555443

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.90  E-value=6.9e-24  Score=184.53  Aligned_cols=232  Identities=10%  Similarity=0.015  Sum_probs=168.5

Q ss_pred             CCCcccchhhhhhccCcccccc-cChhhhcccCCC-CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc----
Q 024997            1 MPFYPLYQEQTDYFESVDYKFE-GEANLWGNASSD-THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY----   69 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~-~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y----   69 (259)
                      +|+|+.+...++..|.++..+. .|+++|++.+.+ +++++++++|+||||.++     .++|+++|+++|+||+|    
T Consensus       150 ~~~~~~~~~~~~~~g~~~~~~~~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~  229 (409)
T 3kki_A          150 FFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGT  229 (409)
T ss_dssp             TTSCHHHHHHHHHTTCEEEEECTTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred             CCcCHHHHHHHHHcCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccc
Confidence            4788888888888888776553 688899998854 579999999999999987     38999999999999999    


Q ss_pred             cCCCCCCCC---C-CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhh--hcCCCCHHHHHHHHHHHHHHHh
Q 024997           70 FWPHFAPIP---A-PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL--NTMGVSRECQLRAFKLLKVVLE  143 (259)
Q Consensus        70 ~~~~~~~~~---~-~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~  143 (259)
                      |++......   + ..+.++++.|+||.++.+|   ||++++ +++++.+......  .....++..+.++.+.++..  
T Consensus       230 ~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~g---g~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~--  303 (409)
T 3kki_A          230 HGPNGAGLLAELGLTREVHFMTASLAKTFAYRA---GAIWCN-NEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEII--  303 (409)
T ss_dssp             SSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEES-SSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHH--
T ss_pred             cCCCCCcchhhcCCCCCCCEEEeecchhhCCCc---eEEEEC-HHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHH--
Confidence            221111111   1 2345799999999998665   999999 5888877764332  23345666666666677642  


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeee
Q 024997          144 DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGR  222 (259)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~  222 (259)
                          ...++.+++++++++.+.+.|++++              +...  ..+.++|+.++.. +...+.+.|.++||.++
T Consensus       304 ----~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~  363 (409)
T 3kki_A          304 ----ESADNRRQHLDRMARKLRIGLSQLG--------------LTIR--SESQIIGLETGDERNTEKVRDYLESNGVFGS  363 (409)
T ss_dssp             ----HHCHHHHHHHHHHHHHHHHHHHTTT--------------CCCC--CSSSEEEEEEESHHHHHHHHHHHHHTTEECE
T ss_pred             ----hcCHHHHHHHHHHHHHHHHHHHHcC--------------CccC--CCCCEEEEEeCCHHHHHHHHHHHHHCCceEe
Confidence                1225678889999999999998763              2222  3677888887653 23334444456699998


Q ss_pred             cCCcccC--CCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          223 EGKKFRA--EARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       223 ~g~~f~~--~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      ++..+..  +.+++||++..  +++++++++++|++++++
T Consensus       364 ~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~  403 (409)
T 3kki_A          364 VFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY  403 (409)
T ss_dssp             EECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence            8654322  46799999974  899999999999998864

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.90  E-value=7.5e-25  Score=187.74  Aligned_cols=230  Identities=10%  Similarity=0.044  Sum_probs=163.0

Q ss_pred             CCCcccchhhhhhccCcccc--------cccChhhhcccCC-----CCceEEEEcCCCCCChhhH-----HHhhcCCCcE
Q 024997            1 MPFYPLYQEQTDYFESVDYK--------FEGEANLWGNASS-----DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAK   62 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~--------~~~d~~~l~~~~~-----~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~   62 (259)
                      +|+|+.+...++..|.++..        +.+|+++|++.++     ++++++++++|+||||.++     .++|+++|++
T Consensus       100 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~  179 (371)
T 2e7j_A          100 ENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVP  179 (371)
T ss_dssp             TTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCC
T ss_pred             cCcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCe
Confidence            58899888888888876522        4567888998886     7889999999999999987     3899999999


Q ss_pred             EEeeccccCCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHH-HHHhhh--hh-----cCCCCHHHHHH
Q 024997           63 SIYDHAYFWPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQR-MSAYIS--LN-----TMGVSRECQLR  133 (259)
Q Consensus        63 vi~De~y~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~-~~~~~~--~~-----~~~~~~~~q~~  133 (259)
                      +|+||+|..... +.. ...+.+++++|+||.++. +.|+||+++++ ++++. +.....  ..     ...++...+.+
T Consensus       180 li~D~a~~~~~~-~~~~~~~~~di~~~s~sK~~~~-~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  256 (371)
T 2e7j_A          180 LLVNGAYAIGRM-PVSLKEIGADFIVGSGHKSMAA-SGPIGVMGMKE-EWAEIVLRRSEKYKNKEVELLGCTARGATIIT  256 (371)
T ss_dssp             EEEECTTTBTTB-CCCHHHHTCSEEEEEHHHHSSC-CSSCEEEEECT-TTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHH
T ss_pred             EEEECccccCCC-CCChhhcCCCEEEecCCcCCCC-CCCcEEEEEec-hhhhhhccccccCcccccccccCCcCHHHHHH
Confidence            999999931111 111 112356999999999874 45999999994 87776 654433  11     23344555555


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHH--HHHHHHHHHHHHhcCCCccccccccccccceeeCCC--CCeeEEEecCCCchHH
Q 024997          134 AFKLLKVVLEDGGNNIFEFGYNTM--KKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPP--SPAYAWVKCEREEDKD  209 (259)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  209 (259)
                      +...++..     ..   +..+++  +++++.+.+.|+++ +             +....+.  .+.++|++++  +.+.
T Consensus       257 ~~~~l~~~-----~~---~~~~~~~~~~~~~~l~~~L~~~-~-------------~~~~~~~~~~~~~~~~~~~--~~~~  312 (371)
T 2e7j_A          257 LMASFPHV-----RE---RIKRWDEEVEKARRFAAEMEKL-G-------------IKQLGDNPHNHDLMFFHAE--VLYE  312 (371)
T ss_dssp             HHHHHHHH-----HH---HGGGHHHHHHHHHHHHHHHHHT-T-------------CEEESSSSCCSSEEEEECH--HHHH
T ss_pred             HHHHHHHH-----HH---HHHHHHHHHHHHHHHHHHHHHc-C-------------cEEecCCCccCceEEEECC--CHHH
Confidence            55566532     11   345666  78888888888875 2             3333332  3567899886  4444


Q ss_pred             HHHHHHHcCeeeecCCcccC-----CCCeEE-EEee---cChhhHHHHHHHHHHHhhh
Q 024997          210 CYGILKAAKIIGREGKKFRA-----EARFVR-LSLL---KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       210 ~~~ll~~~gi~~~~g~~f~~-----~~~~~R-is~~---~~~~~~~~~~~~l~~~l~~  258 (259)
                      +.+.|.++||.+.| ..+..     +++++| ++++   .+++++++++++|++++++
T Consensus       313 ~~~~l~~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~  369 (371)
T 2e7j_A          313 ISKKAKGGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK  369 (371)
T ss_dssp             HHHHSSSGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence            55556688999998 54432     268999 9998   5899999999999998764

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.90  E-value=3.2e-23  Score=177.00  Aligned_cols=212  Identities=12%  Similarity=0.016  Sum_probs=152.5

Q ss_pred             cChhhhcc-cCCCCceEEEEcCCCCCChhhHHHhhcCCCcEEEeecccc-CCCCCCCCCCCCCeEEEeccccccCCCcce
Q 024997           23 GEANLWGN-ASSDTHLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAYF-WPHFAPIPAPADEELMIFTISKLTGHAGSR  100 (259)
Q Consensus        23 ~d~~~l~~-~~~~~~~~i~i~~p~NPtG~~~~~la~~~~~~vi~De~y~-~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R  100 (259)
                      +|+++|++ .++++++++++++|+||||.+++++++++|+++|+|++|. +.....+..   ..++++|+||.+|.+|  
T Consensus       128 ~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~~~i~~~~~~~li~D~a~~~~~~~~~~~~---~di~~~s~sK~~~~~G--  202 (360)
T 1w23_A          128 QSIPDFSEFQLNENDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQ---FGMIYAGAQKNLGPSG--  202 (360)
T ss_dssp             CSCCCGGGCCCCTTEEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGG---CSEEEEETTTTTSCTT--
T ss_pred             CCccchHhhccCCCCCEEEEeCCCCCcceecccccccCCceEEEechhhcCCCCcCccc---CCEEEEEcccccCCCC--
Confidence            67788988 8888899999999999999998788889999999999992 111111211   1589999999999777  


Q ss_pred             EEEEEecCHHHHHHHHHhhh------------hhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 024997          101 FGWAVIKDEAVYQRMSAYIS------------LNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKII  168 (259)
Q Consensus       101 ~G~i~~~~~~~~~~~~~~~~------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (259)
                      +||++++ +++++.+.....            .....++...+.++..+++...   ....+++.+++++++++.+.+.|
T Consensus       203 ~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~---~~~~~~~~~~~~~~~~~~l~~~L  278 (360)
T 1w23_A          203 VTVVIVK-KDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIK---DLGGAEAIAKQNEEKAKIIYDTI  278 (360)
T ss_dssp             CEEEEEE-HHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEc-HHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHHHH
Confidence            9999999 688766544210            1112345566666666666321   11156778899999999999999


Q ss_pred             HhcCCCccccccccccccceee--C-CCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--Ch
Q 024997          169 SLSNRFSLQEIAPQYCTYFKKI--R-PPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQ  242 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~  242 (259)
                      ++++++            +...  + ..+++++|++++.. +...+.+.|.++||.+++|..+   ++++|||++.  ++
T Consensus       279 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~---~~~iRis~~~~~~~  343 (360)
T 1w23_A          279 DESNGF------------YVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHRS---VGGCRASIYNAVPI  343 (360)
T ss_dssp             HTTTTS------------SEESSCGGGBCSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCTT---TCSEEEECCTTSCH
T ss_pred             HHccCc------------ccccCCchhccCcEEEEEcCCCccHHHHHHHHHHCCeeeecCCCC---CCeEEEEecCCCCH
Confidence            876531            1111  1 13566889988753 2333444466789999998764   4789999974  88


Q ss_pred             hhHHHHHHHHHHHhhh
Q 024997          243 DDFDLLLHRLDELISK  258 (259)
Q Consensus       243 ~~~~~~~~~l~~~l~~  258 (259)
                      +++++++++|++++++
T Consensus       344 ~~i~~~~~~l~~~~~~  359 (360)
T 1w23_A          344 DACIALRELMIQFKEN  359 (360)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999998875

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.90  E-value=7.6e-23  Score=177.56  Aligned_cols=233  Identities=9%  Similarity=-0.075  Sum_probs=166.3

Q ss_pred             CCccc--chhhhhhccCccc------ccccChhhhcccCCC-CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeec
Q 024997            2 PFYPL--YQEQTDYFESVDY------KFEGEANLWGNASSD-THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDH   67 (259)
Q Consensus         2 P~y~~--~~~~~~~~g~~~~------~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De   67 (259)
                      |+|+.  +...++..|.++.      .+.+|+++|++.+++ +++++++++||||||.+.     .++|+++|+++|+|+
T Consensus        96 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De  175 (411)
T 3nnk_A           96 FGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDA  175 (411)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEEC
T ss_pred             CCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEEC
Confidence            67765  7777777777652      345688999998865 899999999999999987     489999999999999


Q ss_pred             cc-cCCCCCCCCCCCCCeEEEecccccc-CCCcceEEEEEecCHHHHHHHHHhh--------------------------
Q 024997           68 AY-FWPHFAPIPAPADEELMIFTISKLT-GHAGSRFGWAVIKDEAVYQRMSAYI--------------------------  119 (259)
Q Consensus        68 ~y-~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~i~~~~~~~~~~~~~~~--------------------------  119 (259)
                      ++ +....... ...+.++++.|+||.+ |..  ++||++++ +++++.+....                          
T Consensus       176 a~~~~~~~~~~-~~~~~d~~~~s~~K~l~~~~--g~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~  251 (411)
T 3nnk_A          176 TASLGGNPLET-DVWGLDAVSAGMQKCLGGPS--GTSPITLS-ARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDL  251 (411)
T ss_dssp             TTTBTTBCCCT-TTTTCSEEECCSTTTTCCCS--SEEEEEEC-HHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCH
T ss_pred             CcccCCcccch-hccCCcEEEecCccccCCCC--ceEEEEEC-HHHHHHHhhcccccccccccccccccCCCCcccccch
Confidence            98 22111111 2335689999999974 544  58999999 69998887643                          


Q ss_pred             ----------hhhcCCCCHHHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccce
Q 024997          120 ----------SLNTMGVSRECQLRAFKLLKVVLEDGGNNI-FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFK  188 (259)
Q Consensus       120 ----------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  188 (259)
                                .......+...+.++..+++..     ... +++.+++++++++.+.+.|++++              +.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-----~~~g~~~~~~~~~~~~~~l~~~L~~~g--------------~~  312 (411)
T 3nnk_A          252 GMVMDYWGPERLNHHTEATTALFGARECARLI-----LQEGLDYGIARHKLHGDALVKGIQAMG--------------LE  312 (411)
T ss_dssp             HHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHH-----HHHCHHHHHHHHHHHHHHHHHHHHHTT--------------CC
T ss_pred             HHHHhhhccccCCCCCCCHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHHHcC--------------CE
Confidence                      0112344666666666666642     122 67788899999999999998763              11


Q ss_pred             eeCC---CCCeeEEEecCC-Cch-HHHHHHHHHcCeeeecCCcccCCCCeEEEEe-ec--ChhhHHHHHHHHHHHhhh
Q 024997          189 KIRP---PSPAYAWVKCER-EED-KDCYGILKAAKIIGREGKKFRAEARFVRLSL-LK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       189 ~~~~---~~~~~~~~~~~~-~~~-~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~-~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      ...+   ..+.++++.++. .+. ++...+++++||.+++|.... ..+++||++ +.  +++++++++++|++++++
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~-~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~  389 (411)
T 3nnk_A          313 TFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPL-HGKVWRIGTMGYNARKDCVMTTLSALEAVLNY  389 (411)
T ss_dssp             BCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             eCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCCC-CCCEEEEeCccCcCCHHHHHHHHHHHHHHHHH
Confidence            2222   236778888853 343 455555666699999984332 357999998 53  789999999999998764

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.90  E-value=4.9e-23  Score=178.66  Aligned_cols=236  Identities=11%  Similarity=0.024  Sum_probs=162.3

Q ss_pred             CCCcccchhhhhh----ccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDY----FESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~----~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi   64 (259)
                      +|+|+.+...+..    .|.++.       .+.+|+++|++.+++++++|++++|+||||.++     .++|+++|+++|
T Consensus       120 ~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li  199 (406)
T 3cai_A          120 RLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVV  199 (406)
T ss_dssp             TTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEE
T ss_pred             CCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEE
Confidence            4677776555543    466542       234688999999988899999999999999998     389999999999


Q ss_pred             eeccccCCCCCCCC-CCCCCeEEEeccccccCCCcceEE-EEEecCHHHHHHHHHhhh---------hhcCCCCHHHHHH
Q 024997           65 YDHAYFWPHFAPIP-APADEELMIFTISKLTGHAGSRFG-WAVIKDEAVYQRMSAYIS---------LNTMGVSRECQLR  133 (259)
Q Consensus        65 ~De~y~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G-~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~q~~  133 (259)
                      +|++|.... ..+. ...+.+++++|+||.+| ++  +| |++++ +++++.+.....         .....++.+.+.+
T Consensus       200 ~D~a~~~g~-~~~~~~~~~~d~~~~s~~K~~g-~~--~G~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a  274 (406)
T 3cai_A          200 VDHSAAAPY-RLLDIRETDADVVTVNAHAWGG-PP--IGAMVFRD-PSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAG  274 (406)
T ss_dssp             EECTTTTTT-CCCCHHHHCCSEEEEEGGGGTS-CS--CEEEEESC-HHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHH
T ss_pred             EEcccccCC-CCCCchhcCCCEEEeehhhhcC-CC--cCeEEEEe-hHHHhhcCCcccCCCCCccccccCCCccHHHHHH
Confidence            999993111 1111 12246899999999887 55  89 99998 688877654421         1123345555555


Q ss_pred             HHHHHHHHHhcC----------CcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCC---CCCeeEEE
Q 024997          134 AFKLLKVVLEDG----------GNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP---PSPAYAWV  200 (259)
Q Consensus       134 ~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  200 (259)
                      +..+++...+.+          .+.++++.+++++++++.+.+.|+++++             +....+   .++ ++++
T Consensus       275 ~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------------~~~~~~~~~~~~-~~~~  340 (406)
T 3cai_A          275 VVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPL-------------VMLIGRPEAQIP-VVSF  340 (406)
T ss_dssp             HHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-------------EEECCCCSSBCS-EEEE
T ss_pred             HHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCC-------------eEEcCCccccCC-EEEE
Confidence            555555321100          0014677888899999999999987654             222233   244 6777


Q ss_pred             ecCCCchHHHHHHHHHcCeeeecCC------cccC--CCCeEEEEeec--ChhhHHHHHHHHHHH
Q 024997          201 KCEREEDKDCYGILKAAKIIGREGK------KFRA--EARFVRLSLLK--SQDDFDLLLHRLDEL  255 (259)
Q Consensus       201 ~~~~~~~~~~~~ll~~~gi~~~~g~------~f~~--~~~~~Ris~~~--~~~~~~~~~~~l~~~  255 (259)
                      .++..+.+.+.+.|.++||.+++|.      .|+.  +.+++|++++.  +++++++++++|+++
T Consensus       341 ~~~~~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~  405 (406)
T 3cai_A          341 AVHKVPADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALASL  405 (406)
T ss_dssp             EETTBCHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred             EECCcCHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence            7765445556666667899999987      3442  25899999976  789999999998764

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.90  E-value=6.5e-23  Score=176.78  Aligned_cols=232  Identities=10%  Similarity=0.028  Sum_probs=162.4

Q ss_pred             hhhhhhccCccc------ccccChhhhcccCCC-CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc-cCCCC
Q 024997            8 QEQTDYFESVDY------KFEGEANLWGNASSD-THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY-FWPHF   74 (259)
Q Consensus         8 ~~~~~~~g~~~~------~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y-~~~~~   74 (259)
                      ...++..|.++.      .+.+|+++|++.+++ +++++++++||||||.++     .++|+++|+++|+||+| ++...
T Consensus       114 ~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~  193 (393)
T 3kgw_A          114 AEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVP  193 (393)
T ss_dssp             HHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSC
T ss_pred             HHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcc
Confidence            455556676542      235788999999876 899999999999999987     39999999999999998 22111


Q ss_pred             CCCCCCCCCeEEEecccccc-CCCcceEEEEEecCHHHHHHHHHhhhh-----------------------hcCCCCHHH
Q 024997           75 APIPAPADEELMIFTISKLT-GHAGSRFGWAVIKDEAVYQRMSAYISL-----------------------NTMGVSREC  130 (259)
Q Consensus        75 ~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~i~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~  130 (259)
                      ... ...+.++++.|+||.+ |.+|  +||++++ +++++.+......                       ....++...
T Consensus       194 ~~~-~~~~~d~~~~s~sK~~~~~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (393)
T 3kgw_A          194 IYM-DQQGIDIMYSSSQKVLNAPPG--ISLISFN-DKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTS  269 (393)
T ss_dssp             CCT-TTTTCCEEEEESSSTTCCCSS--CEEEEEC-HHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHH
T ss_pred             cch-hhcCCCEEEecCcccccCCCc--eeEEEEC-HHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHH
Confidence            111 2345688999999976 4455  8999999 6999888653211                       123456666


Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-Cc-hH
Q 024997          131 QLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-EE-DK  208 (259)
Q Consensus       131 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~  208 (259)
                      +.++...++..    .+..+++.+++++++++.+.+.|++++ +.+.  .+       ......++++++.++. .+ .+
T Consensus       270 ~~a~~~al~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~  335 (393)
T 3kgw_A          270 LYCLRESLALI----AEQGLENCWRRHREATAHLHKHLQEMG-LKFF--VK-------DPEIRLPTITTVTVPAGYNWRD  335 (393)
T ss_dssp             HHHHHHHHHHH----HHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBS--SS-------SGGGBCSSEEEEECCTTBCHHH
T ss_pred             HHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHcC-Ceec--cC-------ChhhcCCeEEEEeCCCCCCHHH
Confidence            66666666632    122367788999999999999999863 2111  00       0012335667777753 23 34


Q ss_pred             HHHHHHHHcCeeeecCCcccCCCCeEEEEe-ec--ChhhHHHHHHHHHHHhhh
Q 024997          209 DCYGILKAAKIIGREGKKFRAEARFVRLSL-LK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       209 ~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~-~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      +...+++++||.+++|..+. .++++|+++ +.  +++++++++++|++++++
T Consensus       336 ~~~~l~~~~gi~v~~g~~~~-~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~  387 (393)
T 3kgw_A          336 IVSYVLDHFSIEISGGLGPT-EERVLRIGLLGYNATTENVDRVAEALREALQH  387 (393)
T ss_dssp             HHHHHHHHHCEECBCCCGGG-TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEEeCCcccC-CCCEEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence            55555555599999988644 358999998 63  889999999999998864

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.90  E-value=1.2e-22  Score=176.18  Aligned_cols=236  Identities=11%  Similarity=-0.013  Sum_probs=166.5

Q ss_pred             CCCcccch---hhhhhccCc--c-------cccccChhhhcccCCC-CceEEEEcCCCCCChhhH---HHhhcCCCcEEE
Q 024997            1 MPFYPLYQ---EQTDYFESV--D-------YKFEGEANLWGNASSD-THLVEFVTAPNNPDGQMN---KAVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~---~~~~~~g~~--~-------~~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~---~~la~~~~~~vi   64 (259)
                      +|+|+.+.   ..++..|..  .       ..+.+|+++|++.+++ +++++++++|+||+-.-+   .++|+++|+++|
T Consensus       116 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li  195 (407)
T 2dkj_A          116 DLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLV  195 (407)
T ss_dssp             CGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEE
T ss_pred             cccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEeccccCCCCCHHHHHHHHHHcCCEEE
Confidence            47787773   444444431  1       1467888999988864 788888899999843323   388999999999


Q ss_pred             eecccc-----CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHH-HHHHHH
Q 024997           65 YDHAYF-----WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQL-RAFKLL  138 (259)
Q Consensus        65 ~De~y~-----~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~l  138 (259)
                      +||+|.     .......  ....+++++|+||.+  +|.|+||++++++++++.+.........+.+.+.+. ++..++
T Consensus       196 ~Dea~~~g~~~~~~~~~~--~~~~di~~~s~sK~l--~g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al  271 (407)
T 2dkj_A          196 VDMAHFAGLVAAGLHPNP--LPYAHVVTSTTHKTL--RGPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAF  271 (407)
T ss_dssp             EECTTTHHHHHTTCSCCC--TTTCSEEEEESSGGG--CCCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHH
T ss_pred             EEccccccccccCccCCc--cccccEEEEeccccC--CCCCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHH
Confidence            999982     1111111  123689999999955  588999999984589988887665444444444344 555666


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeC-CCCCeeEEEecCCC--chHHHHHHHH
Q 024997          139 KVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIR-PPSPAYAWVKCERE--EDKDCYGILK  215 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~ll~  215 (259)
                      +..    ...++++.+++++++++.+.+.|++++              +.... +..+.++|++++..  +.+.+.+.|.
T Consensus       272 ~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (407)
T 2dkj_A          272 FEA----LQPEFKEYSRLVVENAKRLAEELARRG--------------YRIVTGGTDNHLFLVDLRPKGLTGKEAEERLD  333 (407)
T ss_dssp             HHH----HSHHHHHHHHHHHHHHHHHHHHHHHTT--------------CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHH
T ss_pred             HHH----HHhhHHHHHHHHHHHHHHHHHHHHhCC--------------ceeecCCCCceEEEEECcccCCCHHHHHHHHH
Confidence            532    134677889999999999999998763              22222 45678889998742  4555666677


Q ss_pred             HcCeeeecCCcc----c-CCCCeEEEEee------cChhhHHHHHHHHHHHhhh
Q 024997          216 AAKIIGREGKKF----R-AEARFVRLSLL------KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       216 ~~gi~~~~g~~f----~-~~~~~~Ris~~------~~~~~~~~~~~~l~~~l~~  258 (259)
                      ++||.+++|..+    + ..++++|+|++      .+++++++++++|++++++
T Consensus       334 ~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          334 AVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE  387 (407)
T ss_dssp             HTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred             HcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence            899999998754    2 13578999995      5899999999999998764

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.90  E-value=7.8e-24  Score=183.45  Aligned_cols=207  Identities=11%  Similarity=0.092  Sum_probs=148.0

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChh-hH--------HHhhcCCCcEEEeeccc--cCCCCCCC--C--CCCCCeEEE
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQ-MN--------KAVLKGPYAKSIYDHAY--FWPHFAPI--P--APADEELMI   87 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~-~~--------~~la~~~~~~vi~De~y--~~~~~~~~--~--~~~~~~i~~   87 (259)
                      .|+++|++.++++++++++++||||||. ++        .++|+++|+++|+||+|  |.......  .  +....   +
T Consensus       171 ~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d---~  247 (397)
T 2ord_A          171 NNVEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPD---V  247 (397)
T ss_dssp             TCHHHHHHHCCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCS---E
T ss_pred             CCHHHHHHHhhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCC---e
Confidence            4788899999888999999999999998 43        38899999999999999  32111111  1  11112   2


Q ss_pred             eccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHH
Q 024997           88 FTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKI  167 (259)
Q Consensus        88 ~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
                      .||||.++ +|+|+||+++++ +++ .+.......+++++++.|.++.++++..   ..    ++.+++++++++.+.+.
T Consensus       248 ~s~sK~~~-~G~r~G~~~~~~-~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~----~~~~~~~~~~~~~l~~~  317 (397)
T 2ord_A          248 LTTAKGLG-GGVPIGAVIVNE-RAN-VLEPGDHGTTFGGNPLACRAGVTVIKEL---TK----EGFLEEVEEKGNYLMKK  317 (397)
T ss_dssp             EEECGGGG-TTSCCEEEEECS-TTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHH---TS----TTHHHHHHHHHHHHHHH
T ss_pred             eeeccccC-CCcCeEEEEEch-Hhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHH---Hh----CCHHHHHHHHHHHHHHH
Confidence            38899999 899999999995 776 5543333445678999999999988853   11    34577888889999888


Q ss_pred             HHhcC-CCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChh
Q 024997          168 ISLSN-RFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQD  243 (259)
Q Consensus       168 l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~  243 (259)
                      |+++. ++.          .+....+ .|.++|++++.. +.+.+.+.|.++||.++||     +++++|+++.  .+++
T Consensus       318 L~~~~~~~~----------~~~~~~~-~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~-----~~~~iRis~~~~~~~e  381 (397)
T 2ord_A          318 LQEMKEEYD----------VVADVRG-MGLMIGIQFREEVSNREVATKCFENKLLVVPA-----GNNTIRFLPPLTVEYG  381 (397)
T ss_dssp             HHHHHHHCT----------TEEEEEE-ETTEEEEEECTTSCHHHHHHHHHHTTEECEEE-----TTTEEEECCCTTCCHH
T ss_pred             HHHHHHhCC----------ceEEEEE-EeEEEEEEECChHHHHHHHHHHHHCCCEEccC-----CCCEEEEECCcCCCHH
Confidence            87653 110          0111223 356778888653 3444445555689999996     2579999964  4899


Q ss_pred             hHHHHHHHHHHHhhh
Q 024997          244 DFDLLLHRLDELISK  258 (259)
Q Consensus       244 ~~~~~~~~l~~~l~~  258 (259)
                      ++++++++|++++++
T Consensus       382 ~i~~~~~~l~~~l~~  396 (397)
T 2ord_A          382 EIDLAVETLKKVLQG  396 (397)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999998764

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.90  E-value=1e-22  Score=175.85  Aligned_cols=233  Identities=12%  Similarity=-0.033  Sum_probs=158.7

Q ss_pred             CCcccch--hhhhhccCcccc------cccChhhhcccC--CCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEee
Q 024997            2 PFYPLYQ--EQTDYFESVDYK------FEGEANLWGNAS--SDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYD   66 (259)
Q Consensus         2 P~y~~~~--~~~~~~g~~~~~------~~~d~~~l~~~~--~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~D   66 (259)
                      |+|+.+.  ..++..|.++..      +.+|+++|++.+  +++++++++++|+||||.++     .++|+++|+++|+|
T Consensus        91 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D  170 (392)
T 2z9v_A           91 SGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVD  170 (392)
T ss_dssp             SSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEE
T ss_pred             CCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEE
Confidence            5666542  333445665522      247888999888  46889999999999999987     38999999999999


Q ss_pred             ccc-cCCCCCCCCCCCCCeEEEeccccc-cCCCcceEEEEEecCHHHHHHHHHhh--------------------hhhcC
Q 024997           67 HAY-FWPHFAPIPAPADEELMIFTISKL-TGHAGSRFGWAVIKDEAVYQRMSAYI--------------------SLNTM  124 (259)
Q Consensus        67 e~y-~~~~~~~~~~~~~~~i~~~S~SK~-~g~~G~R~G~i~~~~~~~~~~~~~~~--------------------~~~~~  124 (259)
                      ++| ++.....+ ...+.+++++|+||. +|.+|+  ||++++ +++++.++...                    .....
T Consensus       171 ~a~~~g~~~~~~-~~~~~d~~~~s~sK~~~~~~g~--G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  246 (392)
T 2z9v_A          171 AVSSFGGMKTHP-EDCKADIYVTGPNKCLGAPPGL--TMMGVS-ERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPF  246 (392)
T ss_dssp             CTTTBTTBSCCG-GGGTCSEEEECSSSTTCCCSCC--EEEEEC-HHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSS
T ss_pred             cccccCCccccc-ccccceEEEecCcccccCCCce--eEEEEC-HHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCC
Confidence            998 32111111 122467999999995 455674  999999 69888886421                    11123


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeC-C---CCCeeEE
Q 024997          125 GVSRECQLRAFKLLKVVLEDGGNNI-FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIR-P---PSPAYAW  199 (259)
Q Consensus       125 ~~~~~~q~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~  199 (259)
                      .++...+.++..+++..     ... +++.+++++++++.+.+.|+++ ++.             ... +   ..+.+++
T Consensus       247 ~~~~~~~~a~~~al~~~-----~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~-------------~~~~~~~~~~~~~~~  307 (392)
T 2z9v_A          247 TPSVSEINGLDVALDLY-----LNEGPEAVWARHALTAKAMRAGVTAM-GLS-------------VWAASDSIASPTTTA  307 (392)
T ss_dssp             CCCHHHHHHHHHHHHHH-----HHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-------------BSSSSGGGBCTTEEE
T ss_pred             CCCHHHHHHHHHHHHHH-----HhccHHHHHHHHHHHHHHHHHHHHHc-CCe-------------eccCCccccCCceEE
Confidence            34555555555566532     122 5677888999999999999876 322             122 2   2466778


Q ss_pred             EecCC-Cch-HHHHHHHHHcCeeeecCCcccCCCCeEEEEe-e--cChhhHHHHHHHHHHHhhh
Q 024997          200 VKCER-EED-KDCYGILKAAKIIGREGKKFRAEARFVRLSL-L--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       200 ~~~~~-~~~-~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~-~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      +.++. .+. ++...+++++||.+++|..+. ..+++|+++ +  .+++++++++++|++++++
T Consensus       308 ~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~-~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~  370 (392)
T 2z9v_A          308 VRTPDGVDEKALRQAARARYGVVFSSGRGET-LGKLTRIGHMGPTAQPIYAIAALTALGGAMNA  370 (392)
T ss_dssp             EECCTTCCHHHHHHHHHHHHCEECEECCGGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHhcCCEEEecCCCCC-CCCeEEEeCcccccCHHHHHHHHHHHHHHHHH
Confidence            88753 344 444444444499999988654 358999994 5  4999999999999988753

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.90  E-value=1.1e-23  Score=182.39  Aligned_cols=234  Identities=12%  Similarity=0.017  Sum_probs=144.9

Q ss_pred             CCCcccchhhhhhc---cCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEee
Q 024997            1 MPFYPLYQEQTDYF---ESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYD   66 (259)
Q Consensus         1 ~P~y~~~~~~~~~~---g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~D   66 (259)
                      +|.||.+...+...   |.++.      .+.+|+++|++.++++++++++++||||||.++     .++|+++|+++|+|
T Consensus       116 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D  195 (400)
T 3vax_A          116 AIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVD  195 (400)
T ss_dssp             TTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEE
T ss_pred             ccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEE
Confidence            35677776666553   55542      345788999999988999999999999999987     38999999999999


Q ss_pred             cccc-CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEE-ecCHHHH---HHHHHhh-------hhhcCCCCHHHHHHH
Q 024997           67 HAYF-WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAV-IKDEAVY---QRMSAYI-------SLNTMGVSRECQLRA  134 (259)
Q Consensus        67 e~y~-~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~-~~~~~~~---~~~~~~~-------~~~~~~~~~~~q~~~  134 (259)
                      ++|- ......+...  .+++++|+||.+|.+|  +|+++ ++++++.   ..+....       ......++...+.++
T Consensus       196 ~a~~~~~~~~~~~~~--~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  271 (400)
T 3vax_A          196 AAQGYGKVPGDLTTP--IDMISISGHKIGAPKG--VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGL  271 (400)
T ss_dssp             CTTTTTTSGGGGGSC--CSEEEEETGGGTSCSS--CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHH
T ss_pred             hhhhcCCCCcChhhc--CcEEEEeHHHhCCCCc--eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHH
Confidence            9982 1111112122  5789999999888666  56666 6631221   1111111       112334566666666


Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCC---CeeEEEecCCCchHHHH
Q 024997          135 FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPS---PAYAWVKCEREEDKDCY  211 (259)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  211 (259)
                      ..+++..     .+.+++.+++++++++.+.+.|+ .++             +....+.+   +.++++.++..+.+.+.
T Consensus       272 ~~al~~~-----~~~~~~~~~~~~~~~~~l~~~L~-~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~  332 (400)
T 3vax_A          272 AEAAKIF-----EAEHAQWQVAAQDLRSRLLAGLA-STS-------------FQVNGDQDHVVPHILNLSFEDVDAEAFL  332 (400)
T ss_dssp             HHHHHHH-----HHSHHHHHHHHHHHHHHHHHHHT-TTT-------------CEECSCTTSBCTTEEEEECTTCCHHHHH
T ss_pred             HHHHHHH-----HhhHHHHHHHHHHHHHHHHHhhC-CCC-------------EEEeCCcccCCCCEEEEEeCCCCHHHHH
Confidence            6666632     23567788899999999999987 554             22333333   34666677655566666


Q ss_pred             HHHHHcCeeeecCCcccCC------------------CCeEEEEe-ec--ChhhHHHHHHHHHHHhhh
Q 024997          212 GILKAAKIIGREGKKFRAE------------------ARFVRLSL-LK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       212 ~ll~~~gi~~~~g~~f~~~------------------~~~~Ris~-~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      +.|. +||.+++|..|...                  .+++||++ +.  +++++++++++|++++++
T Consensus       333 ~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          333 VTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS  399 (400)
T ss_dssp             HHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred             HHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence            6777 89999998766431                  48999999 64  789999999999988753

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.89  E-value=2.3e-22  Score=174.79  Aligned_cols=233  Identities=10%  Similarity=-0.023  Sum_probs=163.4

Q ss_pred             CCccc--chhhhhhccCccc------ccccChhhhcccCC-CCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeec
Q 024997            2 PFYPL--YQEQTDYFESVDY------KFEGEANLWGNASS-DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDH   67 (259)
Q Consensus         2 P~y~~--~~~~~~~~g~~~~------~~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De   67 (259)
                      |+|+.  +...++..|.++.      .+.+|+++|++.++ ++++++++++||||||.++     .++|+++|+++|+|+
T Consensus        94 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~  173 (416)
T 3isl_A           94 YGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDA  173 (416)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEEC
T ss_pred             CCcccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEEC
Confidence            66665  6666777777652      23568889999886 5889999999999999987     389999999999999


Q ss_pred             cc-cCCCCCCCCCCCCCeEEEeccccc-cCCCcceEEEEEecCHHHHHHHHHhh--------------------------
Q 024997           68 AY-FWPHFAPIPAPADEELMIFTISKL-TGHAGSRFGWAVIKDEAVYQRMSAYI--------------------------  119 (259)
Q Consensus        68 ~y-~~~~~~~~~~~~~~~i~~~S~SK~-~g~~G~R~G~i~~~~~~~~~~~~~~~--------------------------  119 (259)
                      +| ++...... ...+.++++.|+||. +|..|  +|+++++ +++++.+....                          
T Consensus       174 a~~~~~~~~~~-~~~~~d~~~~s~~K~l~g~~g--~g~~~~~-~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~  249 (416)
T 3isl_A          174 VATIGGCEVKV-DEWKIDAAIGGTQKCLSVPSG--MAPITYN-ERVADVIAARKKVERGIATQADRAALSGNRPITSNYF  249 (416)
T ss_dssp             TTTTTTSCCCT-TTTTCSEEECCSSSTTCCCSS--EEEEEEC-HHHHHHHHTC------------------CCCCSCSTT
T ss_pred             CccccCCCcch-hhcCCCEEEecCccccCCCCC--eEEEEEC-HHHHHHhhccccccccccccccchhccCCCCCCcccc
Confidence            98 22111111 233568999999997 45444  8999999 69988877421                          


Q ss_pred             ------------hhhcCCCCHHHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q 024997          120 ------------SLNTMGVSRECQLRAFKLLKVVLEDGGNNI-FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTY  186 (259)
Q Consensus       120 ------------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  186 (259)
                                  ......++...+.++..+++..     ..+ +++.+++++++++.+.+.|++++              
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-----~~~g~~~~~~~~~~~~~~l~~~L~~~g--------------  310 (416)
T 3isl_A          250 DLSQLEDYWSERRLNHHTEATTMLYALREGVRLV-----LEEGLETRFERHRHHEAALAAGIKAMG--------------  310 (416)
T ss_dssp             CHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHH-----HHHCHHHHHHHHHHHHHHHHHHHHHTT--------------
T ss_pred             chHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHHHcC--------------
Confidence                        0112244666666666666642     223 67888999999999999998753              


Q ss_pred             ceeeCCC---CCeeEEEecCC-Cch-HHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--Chhh-HHHHHHHHHHHhhh
Q 024997          187 FKKIRPP---SPAYAWVKCER-EED-KDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDD-FDLLLHRLDELISK  258 (259)
Q Consensus       187 ~~~~~~~---~~~~~~~~~~~-~~~-~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~-~~~~~~~l~~~l~~  258 (259)
                      +....++   .+.++++.++. .+. ++...+++++||.+++|.... .++++|+++..  ++++ +++++++|++++++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~-~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~  389 (416)
T 3isl_A          311 LRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPL-AGKIWRIGTMGYSCRKENVLFVLAGLEAVLLR  389 (416)
T ss_dssp             CCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTT-TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             CEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCC-CCCEEEEecccCCCcHHHHHHHHHHHHHHHHH
Confidence            2222332   35677788753 344 445555555599999987432 35899999932  5555 99999999998763

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.89  E-value=4.9e-22  Score=171.68  Aligned_cols=244  Identities=11%  Similarity=0.031  Sum_probs=157.7

Q ss_pred             CCCcccchhh----hhhccCcccccc-cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc
Q 024997            1 MPFYPLYQEQ----TDYFESVDYKFE-GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~~~~~~----~~~~g~~~~~~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~   70 (259)
                      +|+|+.....    ++..|.++..+. .|++.|++.++++++++++++|+||||.++     .++|+++|+++|+||+|.
T Consensus        98 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~  177 (386)
T 1cs1_A           98 HDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFL  177 (386)
T ss_dssp             TTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred             cCCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCc
Confidence            3666653322    244565554333 377889888888889999999999999987     389999999999999993


Q ss_pred             CCCCCCCCCCCCCeEEEeccccccCCCcceE-EEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcch
Q 024997           71 WPHFAPIPAPADEELMIFTISKLTGHAGSRF-GWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNI  149 (259)
Q Consensus        71 ~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~-G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  149 (259)
                      ..... .+...+.+++++|+||.++.+|.|+ ||++++++++++.+.......+...+++.++++...++         +
T Consensus       178 ~~~~~-~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~---------~  247 (386)
T 1cs1_A          178 SPALQ-NPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR---------T  247 (386)
T ss_dssp             CTTTC-CGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT---------T
T ss_pred             ccccC-CccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc---------H
Confidence            11110 1112457899999999998899997 99999855888988877766556678887777665554         3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccccccccc-cccceeeC---CCCCeeEEEecCCCchHHHHHHHHHcCeeeecCC
Q 024997          150 FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQY-CTYFKKIR---PPSPAYAWVKCEREEDKDCYGILKAAKIIGREGK  225 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~  225 (259)
                      +.+..+.+.++.+.+.+.|++++.+.....+... ...+....   ...+.++.+.++.. .+.+...|+++||.+++.+
T Consensus       248 ~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~~~  326 (386)
T 1cs1_A          248 LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-EQTLRRFLGGLSLFTLAES  326 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC-HHHHHHHHHTCSSSEEBSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC-HHHHHHHHHhCCcceEccc
Confidence            4556777888889998888876543211111100 00011111   11244455566543 4667777888999887421


Q ss_pred             c---------------c----------cCCCCeEEEEeec--ChhhHHHHHHHHHHH
Q 024997          226 K---------------F----------RAEARFVRLSLLK--SQDDFDLLLHRLDEL  255 (259)
Q Consensus       226 ~---------------f----------~~~~~~~Ris~~~--~~~~~~~~~~~l~~~  255 (259)
                      .               +          +.+++++|+|++.  ++++++.+.+.|+++
T Consensus       327 ~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~  383 (386)
T 1cs1_A          327 LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA  383 (386)
T ss_dssp             CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence            1               0          1225899999976  233344444444443

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.89  E-value=2.4e-23  Score=181.78  Aligned_cols=213  Identities=9%  Similarity=-0.030  Sum_probs=144.5

Q ss_pred             cChhhhcccCC-----CCceEEEE-cCCCCCCh-hhH--------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCe
Q 024997           23 GEANLWGNASS-----DTHLVEFV-TAPNNPDG-QMN--------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEE   84 (259)
Q Consensus        23 ~d~~~l~~~~~-----~~~~~i~i-~~p~NPtG-~~~--------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~   84 (259)
                      +|+++|++.++     +++++|++ ++||| || .++        .++|+++|+++|+||+|  |........ +..+..
T Consensus       182 ~d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~  260 (426)
T 1sff_A          182 DAIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVA  260 (426)
T ss_dssp             HHHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSC
T ss_pred             HHHHHHHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCC
Confidence            47788888774     45666555 34578 99 444        28899999999999999  321111111 112223


Q ss_pred             EEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 024997           85 LMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENL  164 (259)
Q Consensus        85 i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (259)
                      +.+.||||.++. |+|+||++++ +++++.+.......+.+++++.|.++.++++...+   +    ...++++++++.+
T Consensus       261 ~di~s~sK~~~~-GlriG~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~---~----~~~~~~~~~~~~l  331 (426)
T 1sff_A          261 PDLTTFAKSIAG-GFPLAGVTGR-AEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ---E----NLLQKANDLGQKL  331 (426)
T ss_dssp             CSEEEECGGGGT-SSCCEEEEEE-HHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH---T----THHHHHHHHHHHH
T ss_pred             CCEEEEcccccC-CCceEEEEEc-HHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHh---c----CHHHHHHHHHHHH
Confidence            335599999995 9999999999 68888776544445677899999999888774311   1    2356677777777


Q ss_pred             HHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC---------CchHHHHHHHHHcCeeeecCCcccCCCCeEE
Q 024997          165 SKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER---------EEDKDCYGILKAAKIIGREGKKFRAEARFVR  235 (259)
Q Consensus       165 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~R  235 (259)
                      .+.|+.+..    .++.     +....+. |+++|+++..         .+.+.+.+.|.++||.++||..+   ++++|
T Consensus       332 ~~~l~~~~~----~~~~-----~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~---~~~iR  398 (426)
T 1sff_A          332 KDGLLAIAE----KHPE-----IGDVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPY---YNVLR  398 (426)
T ss_dssp             HHHHHHHHH----TCTT-----EEEEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTT---SCEEE
T ss_pred             HHHHHHHHH----hCCC-----eEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCC---CCEEE
Confidence            777765431    0110     2223444 7788998842         12333444455689999998764   48999


Q ss_pred             EEee--cChhhHHHHHHHHHHHhhh
Q 024997          236 LSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       236 is~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      |+++  .+++++++++++|++++++
T Consensus       399 i~~~~~~~~~~i~~~~~~l~~~l~~  423 (426)
T 1sff_A          399 ILVPLTIEDAQIRQGLEIISQCFDE  423 (426)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EECCccCCHHHHHHHHHHHHHHHHH
Confidence            9986  3999999999999998753

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.89  E-value=1.7e-22  Score=173.87  Aligned_cols=226  Identities=8%  Similarity=0.029  Sum_probs=156.9

Q ss_pred             hhhhhccCccc-------ccccChhhhcccCCC-CceEEEEcCCCCCChhhH-----HHhhcCC--CcEEEeeccc-cCC
Q 024997            9 EQTDYFESVDY-------KFEGEANLWGNASSD-THLVEFVTAPNNPDGQMN-----KAVLKGP--YAKSIYDHAY-FWP   72 (259)
Q Consensus         9 ~~~~~~g~~~~-------~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~-----~~la~~~--~~~vi~De~y-~~~   72 (259)
                      ..++..|.++.       .+.+|+++|++.+++ ++++|++++|+||||.++     .++|+++  |+++|+|++| ++.
T Consensus       103 ~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~  182 (385)
T 2bkw_A          103 DCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGC  182 (385)
T ss_dssp             HHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTT
T ss_pred             HHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCC
Confidence            44555566542       234688889988865 789999999999999987     3889999  9999999999 321


Q ss_pred             CCCCCCCCCCCeEEEecccccc-CCCcceEEEEEecCHHHHH-HHH------------------Hhh-hhh------cCC
Q 024997           73 HFAPIPAPADEELMIFTISKLT-GHAGSRFGWAVIKDEAVYQ-RMS------------------AYI-SLN------TMG  125 (259)
Q Consensus        73 ~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~i~~~~~~~~~-~~~------------------~~~-~~~------~~~  125 (259)
                      ....+ ...+.+++++|+||.+ |.+|  +||++++ +++++ .+.                  ... ...      ...
T Consensus       183 ~~~~~-~~~~~d~~~~s~~K~~~~~~G--~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (385)
T 2bkw_A          183 EEFEF-DEWGVDFALTASQKAIGAPAG--LSISLCS-SRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFAT  258 (385)
T ss_dssp             SCCCT-TTTTCSEEEEESSSTTCCCSC--EEEEEEC-HHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSC
T ss_pred             ccccc-cccCceEEEecCccccccCCc--ceEEEEc-HHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCC
Confidence            11122 2234688999999965 4677  5999998 57776 442                  111 111      124


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH-HhcCCCccccccccccccceeeCC-----CCCeeEE
Q 024997          126 VSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKII-SLSNRFSLQEIAPQYCTYFKKIRP-----PSPAYAW  199 (259)
Q Consensus       126 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  199 (259)
                      ++...+.++..+++...    +..+++.+++++++++.+.+.| +++ +             +....+     ..+.++|
T Consensus       259 ~~~~~~~a~~~al~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~~-g-------------~~~~~~~~~~~~~~~~~~  320 (385)
T 2bkw_A          259 PPVQLINSLDVALKEIL----EEGLHKRWDLHREMSDWFKDSLVNGL-Q-------------LTSVSRYPSNMSAHGLTA  320 (385)
T ss_dssp             CCHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHHHHTTT-C-------------CEESSCSSSTTBCSSCEE
T ss_pred             CCHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHHHHHHHHHHhc-C-------------ceecccCcccccCCceEE
Confidence            56666666666666421    1125667888899999999998 765 2             222221     2577888


Q ss_pred             EecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEE-ee-----cChhhHHHHHHHHHHHhhh
Q 024997          200 VKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLS-LL-----KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       200 ~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris-~~-----~~~~~~~~~~~~l~~~l~~  258 (259)
                      +.++.  .+.+.+.|.++||.+++|..+....+++||| ++     .+++++++++++|++++++
T Consensus       321 ~~~~~--~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~  383 (385)
T 2bkw_A          321 VYVAD--PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR  383 (385)
T ss_dssp             EECSC--HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred             EecCC--HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence            88875  3444455567899999998765556899999 76     3889999999999998753

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.89  E-value=3.1e-22  Score=174.50  Aligned_cols=242  Identities=12%  Similarity=0.102  Sum_probs=160.2

Q ss_pred             CCCcccchhhhhh----ccCccccccc-ChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc
Q 024997            1 MPFYPLYQEQTDY----FESVDYKFEG-EANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~~~~~~~~~----~g~~~~~~~~-d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~   70 (259)
                      +|+|+.+...++.    .|.++..+.. |+++|++.+++++++|++++|+||||.+.     .++|+++|+++|+|++|-
T Consensus       127 ~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~  206 (414)
T 3ndn_A          127 RSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFA  206 (414)
T ss_dssp             SCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred             CCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCc
Confidence            4778877766644    6666543333 77889999988999999999999999997     389999999999999982


Q ss_pred             CCC-CCCCCCCCCCeEEEeccccccCCCc-ceEEEEEecCHHHHH-HHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCc
Q 024997           71 WPH-FAPIPAPADEELMIFTISKLTGHAG-SRFGWAVIKDEAVYQ-RMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGN  147 (259)
Q Consensus        71 ~~~-~~~~~~~~~~~i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~-~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~  147 (259)
                      .+. ..++  ..+.++++.|+||.+|.+| +|+|+++++ ++.+. .+...........++...+++...++        
T Consensus       207 ~~~~~~~~--~~g~div~~S~sK~l~~~G~~~~G~vv~~-~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~--------  275 (414)
T 3ndn_A          207 TPLLQQGF--PLGVDVVVYSGTKHIDGQGRVLGGAILGD-REYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE--------  275 (414)
T ss_dssp             HHHHCCCG--GGTCSEEEEETTTTTTCSSCCCCEEEEEC-HHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG--------
T ss_pred             ccccCCch--hcCCCeEeccCCccccCCCCceEEEEEEC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--------
Confidence            000 0111  2234789999999999878 899999999 57665 66655555555666665554444443        


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccc----ccceeeCCCCCeeEEEecCCC------chHHHHHHHHHc
Q 024997          148 NIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYC----TYFKKIRPPSPAYAWVKCERE------EDKDCYGILKAA  217 (259)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~  217 (259)
                       .+..+.++..++++.+.+.|++.+.+.....+....    ..++......|..+++.++..      ..+.+...++..
T Consensus       276 -~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~  354 (414)
T 3ndn_A          276 -TLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLI  354 (414)
T ss_dssp             -GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSS
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccc
Confidence             566677888999999999999876543222221000    000011123467888888652      123344444455


Q ss_pred             CeeeecCCcc----------------------cCCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          218 KIIGREGKKF----------------------RAEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       218 gi~~~~g~~f----------------------~~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      ++.+.+|..+                      +..++.+|||++.  ++.+++++.|.+.|
T Consensus       355 ~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~--e~~~dli~dl~~al  413 (414)
T 3ndn_A          355 DISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL--EDTDDLIADIDRAL  413 (414)
T ss_dssp             EECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred             eEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHhh
Confidence            6777777533                      2246799999987  44555566665554

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.89  E-value=7.1e-22  Score=171.15  Aligned_cols=244  Identities=13%  Similarity=0.037  Sum_probs=163.8

Q ss_pred             CCCcccchhhh----hhccCccccccc-ChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc
Q 024997            1 MPFYPLYQEQT----DYFESVDYKFEG-EANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~~~~~~~----~~~g~~~~~~~~-d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~   70 (259)
                      +|+|+.+...+    +..|.++..+.. |+++|++.+++++++|++++|+||||.+.     .++|+++|+++|+|++|-
T Consensus       112 ~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~  191 (392)
T 3qhx_A          112 DDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFA  191 (392)
T ss_dssp             TTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTT
T ss_pred             CCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCc
Confidence            36676655544    444555433332 67889999999999999999999999987     389999999999999982


Q ss_pred             CCCCCCCCCCCCCeEEEeccccccCCCc-ceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcch
Q 024997           71 WPHFAPIPAPADEELMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNI  149 (259)
Q Consensus        71 ~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  149 (259)
                      .+ ...-+...+.++++.|+||.+|.+| +|+||++++++++.+.+.......+.+.++..++++...++         .
T Consensus       192 ~~-~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~---------~  261 (392)
T 3qhx_A          192 SP-ALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLK---------T  261 (392)
T ss_dssp             CT-TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---------T
T ss_pred             cc-ccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh---------H
Confidence            11 1111112345799999999998777 89999999866899988888777778888988888777766         2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc----cceeeCCCCCeeEEEecCCC--chHHHHHHHHHcCeeeec
Q 024997          150 FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCT----YFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAKIIGRE  223 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~  223 (259)
                      +..+.++..++.+.+.+.|++.+.+.....+.....    .+.......|..+++.++..  ..+.+...++..++.+..
T Consensus       262 l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~  341 (392)
T 3qhx_A          262 LVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESL  341 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCC
Confidence            445677888888999999988764322211110000    00000112355678888752  233444445556777776


Q ss_pred             CCccc-------------------CCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          224 GKKFR-------------------AEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       224 g~~f~-------------------~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      |..+.                   ..++.+|||++.  ++.++.++.|.+.+
T Consensus       342 G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~--e~~~~~i~~l~~al  391 (392)
T 3qhx_A          342 GSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI--EDVADLLDDLKQAL  391 (392)
T ss_dssp             CCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred             CCCCceeeCcccccccccCHHHcCCCCCeEEEEecc--CCHHHHHHHHHHHh
Confidence            65422                   135789999987  45555666665554

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.89  E-value=9.2e-22  Score=170.26  Aligned_cols=242  Identities=11%  Similarity=0.104  Sum_probs=165.8

Q ss_pred             CCCcccchhh----hhhccCcccccc-cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc
Q 024997            1 MPFYPLYQEQ----TDYFESVDYKFE-GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~~~~~~----~~~~g~~~~~~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~   70 (259)
                      +|+|+.+...    ++..|.++..+. .|+++|++.++++++++++++|+||||.++     .++|+++|+++|+|++|.
T Consensus       105 ~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~  184 (389)
T 3acz_A          105 DTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFT  184 (389)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCEEEEECTTCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTT
T ss_pred             CCCchHHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCc
Confidence            3677765544    355676654333 478889999988999999999999999997     389999999999999993


Q ss_pred             CCCC-CCCCCCCCCeEEEeccccccCCCcceE-EEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcc
Q 024997           71 WPHF-APIPAPADEELMIFTISKLTGHAGSRF-GWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNN  148 (259)
Q Consensus        71 ~~~~-~~~~~~~~~~i~~~S~SK~~g~~G~R~-G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  148 (259)
                      .... .++  ..+.+++++|+||.++.+|.|+ ||++++++++++.+.......+...++..++++.+.++         
T Consensus       185 ~~~~~~~~--~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~---------  253 (389)
T 3acz_A          185 SPCFLKPL--ELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMK---------  253 (389)
T ss_dssp             CTTTCCGG--GTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---------
T ss_pred             cccccCcc--ccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcc---------
Confidence            1111 112  2356899999999999899998 99999933898888877765566677777777666665         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc-cccceeeC---CCCCeeEEEecCCCchHHHHHHHHHcCeeeec-
Q 024997          149 IFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQY-CTYFKKIR---PPSPAYAWVKCEREEDKDCYGILKAAKIIGRE-  223 (259)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~-  223 (259)
                      .+..+.++..++...+.+.|++++.+.....+... ...+....   ...|.++.+.++.  .+....++++.|+.+++ 
T Consensus       254 ~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~--~~~~~~~l~~~~i~~~~~  331 (389)
T 3acz_A          254 TLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS--FEAAKKLMEHLKVCTLAV  331 (389)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--HHHHHHHHTTCSSSEEBS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC--HHHHHHHHHhCCCcEECc
Confidence            23445667778888888888887543222111100 00011111   1224455666754  56677888888998877 


Q ss_pred             --C------Ccc----------------cCCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          224 --G------KKF----------------RAEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       224 --g------~~f----------------~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                        |      ..+                +.+++.+|+|++.+  +.++.++.|.+.++
T Consensus       332 s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~--~~~~li~~l~~al~  387 (389)
T 3acz_A          332 SLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE--NVDDIIADLKQALE  387 (389)
T ss_dssp             CCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS--CHHHHHHHHHHHHT
T ss_pred             CCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC--CHHHHHHHHHHHHh
Confidence              4      222                12258999999773  66777777777765

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.89  E-value=1.6e-22  Score=177.10  Aligned_cols=215  Identities=13%  Similarity=0.071  Sum_probs=133.5

Q ss_pred             ChhhhcccCC----CCceEEEEcCC-CC-CChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCC-CCe
Q 024997           24 EANLWGNASS----DTHLVEFVTAP-NN-PDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APA-DEE   84 (259)
Q Consensus        24 d~~~l~~~~~----~~~~~i~i~~p-~N-PtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~-~~~   84 (259)
                      |+++|++.++    +++++ ++++| +| |+|.+.         .++|+++|+++|+||+|  |........ ... +..
T Consensus       175 ~~~~le~~l~~~~~~~~~~-vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~  253 (430)
T 3i4j_A          175 DAEGLRALLEREGPETVAA-FMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVT  253 (430)
T ss_dssp             HHTHHHHHHHHHCGGGEEE-EEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCC
T ss_pred             HHHHHHHHHHhcCCCCEEE-EEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCC
Confidence            3477888774    34555 55555 56 788743         38899999999999999  421111111 111 112


Q ss_pred             EEEeccccccCCCc-ceEEEEEecCHHHHHHHHHh----hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 024997           85 LMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAY----ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKK  159 (259)
Q Consensus        85 i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  159 (259)
                      ..+.||||.++ .| +|+||++++ +++++.+...    ....+++.+++.|.++.++++...   .+++    .+.+++
T Consensus       254 ~di~t~sK~l~-~G~~r~G~~~~~-~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~~~~----~~~~~~  324 (430)
T 3i4j_A          254 PDIAVLGKGLA-AGYAPLAGLLAA-PQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVE---REDL----TGAAKE  324 (430)
T ss_dssp             CSEEEECGGGT-TTSSCCEEEEEC-HHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHH---HTTH----HHHHHH
T ss_pred             CcEEEEccccc-CCccccEEEEEC-HHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHH---cccH----HHHHHH
Confidence            22447999998 69 999999998 7999999874    444567899999999999988531   1233    444555


Q ss_pred             HHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCc----------hHHHHHHHHHcCeeeecCCccc-
Q 024997          160 RWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREE----------DKDCYGILKAAKIIGREGKKFR-  228 (259)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ll~~~gi~~~~g~~f~-  228 (259)
                      +.+.+.+.|+++.    ..++     .+...++. |.++++.+.+.+          ...+.+.|.++||.++|+..+. 
T Consensus       325 ~~~~~~~~l~~~~----~~~~-----~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~  394 (430)
T 3i4j_A          325 RGAQLLAGLQALQ----ARFP-----QMMQVRGT-GLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEP  394 (430)
T ss_dssp             HHHHHHHHHHHHH----HHCT-----TEEEEEEE-TTEEEEEEC------------CHHHHHHHHHHTTEECC-------
T ss_pred             HHHHHHHHHHHHH----HhCC-----CeEEEEEE-EEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccC
Confidence            5555555544321    0000     03333444 456666664221          1334455557899999984332 


Q ss_pred             -CCCCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          229 -AEARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       229 -~~~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                       .+++++||+++  .+++++++++++|++++++
T Consensus       395 ~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  427 (430)
T 3i4j_A          395 NGRGDHLLLGPPLSITAAEVDGLLALLAGALED  427 (430)
T ss_dssp             ----CEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence             24689999987  4899999999999998864

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.89  E-value=2.2e-22  Score=174.17  Aligned_cols=211  Identities=12%  Similarity=0.036  Sum_probs=144.9

Q ss_pred             ChhhhcccCCCCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEeccc
Q 024997           24 EANLWGNASSDTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFTIS   91 (259)
Q Consensus        24 d~~~l~~~~~~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~S   91 (259)
                      |+++|++.+++++++++++.++||+|.+.         .++|+++|+++|+||+|  |+....... ...+....+.|+|
T Consensus       168 d~~~l~~~l~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~s  247 (395)
T 3nx3_A          168 DISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSA  247 (395)
T ss_dssp             CHHHHHTTCCTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC
T ss_pred             CHHHHHHhccCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEec
Confidence            78889999988888888888888888873         38899999999999998  322111111 1112222356899


Q ss_pred             cccCCCcceEEEEEecCHHH-HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh
Q 024997           92 KLTGHAGSRFGWAVIKDEAV-YQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISL  170 (259)
Q Consensus        92 K~~g~~G~R~G~i~~~~~~~-~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  170 (259)
                      |.++ .|+|+||++++ +++ ++.+.......+++.+++.|.++.++++...   .+++    .++++++.+.+.+.|++
T Consensus       248 K~~~-~G~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~---~~~~----~~~~~~~~~~~~~~l~~  318 (395)
T 3nx3_A          248 KALG-CGLSVGAFVIN-QKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFK---EEKI----LENVNKLTPYLEQSLDE  318 (395)
T ss_dssp             GGGT-TTSCCEEEEEC-HHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHH---HTTH----HHHHHHHHHHHHHHHHH
T ss_pred             cccc-CCCceEEEEEc-hhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHH---hhHH----HHHHHHHHHHHHHHHHH
Confidence            9998 59999999999 688 8887765555678889999999998887531   1233    34444444444444443


Q ss_pred             cCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHH
Q 024997          171 SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDL  247 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~  247 (259)
                      +..    .++     .+.... ..|.++|+.+... +...+.+.|.++||.++++.     ++++||+++.  +++++++
T Consensus       319 ~~~----~~~-----~~~~~~-~~g~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~iRi~~~~~~t~e~i~~  383 (395)
T 3nx3_A          319 LIN----EFD-----FCKKRK-GLGFMQGLSLDKSVKVAKVIQKCQENALLLISCG-----ENDLRFLPPLILQKEHIDE  383 (395)
T ss_dssp             HHH----HCT-----TEEEEE-EETTEEEEEECTTSCHHHHHHHHHHTTEECEEET-----TTEEEECCCTTCCHHHHHH
T ss_pred             HHH----hCC-----CeEEEE-eEEEEEEEEeCCcchHHHHHHHHHHCCCEEecCC-----CCEEEEECCCCCCHHHHHH
Confidence            210    000     022222 3466778887653 34445555567899999853     5899998643  8999999


Q ss_pred             HHHHHHHHhhh
Q 024997          248 LLHRLDELISK  258 (259)
Q Consensus       248 ~~~~l~~~l~~  258 (259)
                      ++++|++++++
T Consensus       384 ~l~~l~~~l~~  394 (395)
T 3nx3_A          384 MSEKLRKALKS  394 (395)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.88  E-value=2.6e-22  Score=171.29  Aligned_cols=207  Identities=10%  Similarity=-0.079  Sum_probs=146.0

Q ss_pred             cccChhhhcccCCCCceEEEEcCCCCCC-hhhH--------HHhhcCCCcEEEeecccc-------CCCCCCCCCCCCCe
Q 024997           21 FEGEANLWGNASSDTHLVEFVTAPNNPD-GQMN--------KAVLKGPYAKSIYDHAYF-------WPHFAPIPAPADEE   84 (259)
Q Consensus        21 ~~~d~~~l~~~~~~~~~~i~i~~p~NPt-G~~~--------~~la~~~~~~vi~De~y~-------~~~~~~~~~~~~~~   84 (259)
                      +.+|+++|++..  +++++++++||||| |.++        .++|+++|+++|+|++|.       +.....+..  ...
T Consensus       123 ~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~--~~d  198 (357)
T 3lws_A          123 RLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAG--LFD  198 (357)
T ss_dssp             SCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHT--TSS
T ss_pred             CCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHh--cCC
Confidence            467888898873  38899999999998 8876        278999999999999872       111111111  123


Q ss_pred             EEEecccccc-CCCcceEEEEEecCHHHHHHHHHhhhhhcC--CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 024997           85 LMIFTISKLT-GHAGSRFGWAVIKDEAVYQRMSAYISLNTM--GVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRW  161 (259)
Q Consensus        85 i~~~S~SK~~-g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  161 (259)
                      +++.|+||.+ +..|   ||++++ +++++.+.........  ....+.+.++...++.        +.++ .+++.+++
T Consensus       199 ~~~~s~sK~~~~~~g---g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~-~~~~~~~~  265 (357)
T 3lws_A          199 SIYISFYKGLGGIAG---AILAGP-AAFCQTARIWKRRYGGDLISLYPYIVSADYYYEL--------RKDR-MGQYYEQA  265 (357)
T ss_dssp             EEEEESSSTTCCSSC---EEEEEC-HHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH--------HTTC-HHHHHHHH
T ss_pred             EEEEeccccCCCCce---EEEEcC-HHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHH--------HHHH-HHHHHHHH
Confidence            4589999999 5455   999998 7999998876544322  2234445555555553        2222 33467788


Q ss_pred             HHHHHHHHhcCCCcccccccccccccee-eCCCCCeeEEEecCCC---chHHHHHHHHHcCeeeecCCcccCCCCeEEEE
Q 024997          162 ENLSKIISLSNRFSLQEIAPQYCTYFKK-IRPPSPAYAWVKCERE---EDKDCYGILKAAKIIGREGKKFRAEARFVRLS  237 (259)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris  237 (259)
                      +.+.+.|+++++             +.. ..+.+++++|++++..   +.+.+.+.|.++||.++||..+.++..++|++
T Consensus       266 ~~l~~~L~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~  332 (357)
T 3lws_A          266 KQLAEQFNALPG-------------VHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEIS  332 (357)
T ss_dssp             HHHHHHHHTSTT-------------EEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEE
T ss_pred             HHHHHHHHhCCC-------------CeeccCCCcceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccCCCceEEEEE
Confidence            888899987654             444 2467788999998764   24556677778999999997766555689999


Q ss_pred             ee-----cChhhHHHHHHHHHHHhh
Q 024997          238 LL-----KSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       238 ~~-----~~~~~~~~~~~~l~~~l~  257 (259)
                      ++     .+.+++++++++|.+.++
T Consensus       333 i~~~~~~~~~~~l~~al~~l~~al~  357 (357)
T 3lws_A          333 VGDAYGELDQQTRDAGFARLRQAFS  357 (357)
T ss_dssp             BCTTGGGSCHHHHHHHHHHHHHHC-
T ss_pred             ecchhhhcCHHHHHHHHHHHHHhcC
Confidence            86     267889999999988763

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.88  E-value=3.9e-21  Score=168.72  Aligned_cols=243  Identities=11%  Similarity=0.022  Sum_probs=159.3

Q ss_pred             CCcccchhh----hhhccCccccccc-ChhhhcccCCCCc-eEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc
Q 024997            2 PFYPLYQEQ----TDYFESVDYKFEG-EANLWGNASSDTH-LVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         2 P~y~~~~~~----~~~~g~~~~~~~~-d~~~l~~~~~~~~-~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~   70 (259)
                      |.|+.+...    ++..|.++..+.. |+++|++.+++++ ++|++++|+||||.+.     .++|+++|+++|+|++|.
T Consensus       161 ~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~  240 (445)
T 1qgn_A          161 DCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFA  240 (445)
T ss_dssp             TSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred             CCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCc
Confidence            566655443    3445665543332 6788998887778 9999999999999997     389999999999999993


Q ss_pred             CCCCCCCCCCCCCeEEEeccccccCCCc-ceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcch
Q 024997           71 WPHFAPIPAPADEELMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNI  149 (259)
Q Consensus        71 ~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  149 (259)
                      .+.. ..+...+.+++++|+||.+|..| +++||++++ +++++.+...........+++..+++.+.++         .
T Consensus       241 ~~~~-~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~-~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~---------~  309 (445)
T 1qgn_A          241 TPLN-QKALALGADLVLHSATKFLGGHNDVLAGCISGP-LKLVSEIRNLHHILGGALNPNAAYLIIRGMK---------T  309 (445)
T ss_dssp             CTTT-CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEEC-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHGG---------G
T ss_pred             cccc-CCccccCCEEEEECCcccccccccceEEEEEEC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHhHH---------H
Confidence            1111 11112346799999999998655 589999999 6999988876665555556665555544444         4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccccccccc-ccc---ceeeCCCCCeeEEEecCCCchHHHHHHHHHc---Ceeee
Q 024997          150 FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQY-CTY---FKKIRPPSPAYAWVKCEREEDKDCYGILKAA---KIIGR  222 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---gi~~~  222 (259)
                      +..+.++..++.+.+.+.|++++.+.....+... ...   .+......|..+++.++.. .+....++++.   ++.+.
T Consensus       310 l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~-~~~~~~~l~~l~~~~i~~s  388 (445)
T 1qgn_A          310 LHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD-LLTTAKFVDALKIPYIAPS  388 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC-HHHHHHHHHHCSSSEECSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC-HHHHHHHHHhCCCceEecc
Confidence            5556677788889999999987653211111100 000   0000012455677788652 23344444443   67777


Q ss_pred             cCCccc----------------------CCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          223 EGKKFR----------------------AEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       223 ~g~~f~----------------------~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      .|..+.                      ..++.+|+|++.  ++++++++.|++.+++
T Consensus       389 ~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~--Edid~li~~L~~al~~  444 (445)
T 1qgn_A          389 FGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV--EDFDDLKADILQALDS  444 (445)
T ss_dssp             CCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred             CCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence            776431                      235799999984  6788888888887753

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.88  E-value=4e-22  Score=172.47  Aligned_cols=206  Identities=10%  Similarity=0.086  Sum_probs=146.1

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeEEE
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEELMI   87 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i~~   87 (259)
                      .|+++|++.+++++++++++.++||||.+.         .++|+++|+++|+||+|  |........    +.... ++ 
T Consensus       173 ~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d-~~-  250 (395)
T 1vef_A          173 NDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD-IL-  250 (395)
T ss_dssp             TCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS-EE-
T ss_pred             CcHHHHHHHhccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCC-EE-
Confidence            578899999988888877666678999753         28899999999999999  321111111    22222 22 


Q ss_pred             eccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHH
Q 024997           88 FTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKI  167 (259)
Q Consensus        88 ~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
                       ||||.++. |+|+||++++ +++++.+.......+.+++++.|.++..+++...+       ....++++++++.+.+.
T Consensus       251 -s~sK~~~~-g~~~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~-------~~~~~~~~~~~~~l~~~  320 (395)
T 1vef_A          251 -TLAKALGG-GVPLGVAVMR-EEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLER-------TRLWERAAELGPWFMEK  320 (395)
T ss_dssp             -EECGGGGT-TSSCEEEEEE-HHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH-------HTTHHHHHHHHHHHHHH
T ss_pred             -EEcccccC-CCceEEEEeh-HHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHh-------CCHHHHHHHHHHHHHHH
Confidence             89999985 9999999999 58887765532334567889999888888874311       23467788888888888


Q ss_pred             HHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhH
Q 024997          168 ISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDF  245 (259)
Q Consensus       168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~  245 (259)
                      |++++. .          .+.. .+..|.++|++++....++...+++++||.++|+     +.+++||+++  .+++++
T Consensus       321 l~~~~~-~----------~~~~-~~~~g~~~~~~~~~~~~~l~~~l~~~~gi~v~~~-----~~~~iRi~~~~~~~~~~i  383 (395)
T 1vef_A          321 LRAIPS-P----------KIRE-VRGMGLMVGLELKEKAAPYIARLEKEHRVLALQA-----GPTVIRFLPPLVIEKEDL  383 (395)
T ss_dssp             HHTSCC-T----------TEEE-EEEETTEEEEEESSCSHHHHHHHHHHHCEECEES-----STTEEEECCCTTCCHHHH
T ss_pred             HHHhhc-C----------ceEE-EEEEEEEEEEEEcChHHHHHHHHHHHCCeEEecC-----CCCEEEEeCCCCCCHHHH
Confidence            886542 0          0111 2234678888887533455555553789999985     3589999875  389999


Q ss_pred             HHHHHHHHHHhh
Q 024997          246 DLLLHRLDELIS  257 (259)
Q Consensus       246 ~~~~~~l~~~l~  257 (259)
                      ++++++|+++++
T Consensus       384 ~~~~~~l~~~l~  395 (395)
T 1vef_A          384 ERVVEAVRAVLA  395 (395)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999998763

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.88  E-value=1.3e-21  Score=167.99  Aligned_cols=215  Identities=10%  Similarity=0.032  Sum_probs=144.7

Q ss_pred             ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc-cCCCCCCCC-CCCCCeEEEecccc
Q 024997           20 KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY-FWPHFAPIP-APADEELMIFTISK   92 (259)
Q Consensus        20 ~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y-~~~~~~~~~-~~~~~~i~~~S~SK   92 (259)
                      .+.+|+++|++.++++++++++++|+||||.++     .++|+++|+++|+|++| +..  ..+. ...+.++++.|+||
T Consensus       129 ~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~--~~~~~~~~~~d~~~~s~~K  206 (376)
T 3f0h_A          129 GKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLA--DPFNMNECGADVMITGSQK  206 (376)
T ss_dssp             TCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTT--SCCCHHHHTCSEEEEETTT
T ss_pred             CCCCCHHHHHHhhccCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccC--ccccccccCccEEEecCcc
Confidence            367899999998888999999999999999998     38999999999999988 211  1111 12235799999999


Q ss_pred             ccC-CCcceEEEEEecCHHHHHHHHHhhh-----------------hhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHH
Q 024997           93 LTG-HAGSRFGWAVIKDEAVYQRMSAYIS-----------------LNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGY  154 (259)
Q Consensus        93 ~~g-~~G~R~G~i~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  154 (259)
                      .++ .+|  +|+++++ +++++.+.....                 .....++...+.++.++++...   ....+++.+
T Consensus       207 ~l~~~~G--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~---~~~~~~~~~  280 (376)
T 3f0h_A          207 VLACPPG--ISVIVLA-PRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIK---KHGGADAEV  280 (376)
T ss_dssp             TTCCCSS--CEEEEEC-HHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHH---HTTHHHHHH
T ss_pred             cccCCCc--eEEEEEC-HHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHH---HhcCHHHHH
Confidence            997 677  6788888 699888764211                 0122334433344444554321   111466778


Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCC--CCeeEEEecCCCch-HHHHHHHHHcCeeeecCCcccCCC
Q 024997          155 NTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPP--SPAYAWVKCEREED-KDCYGILKAAKIIGREGKKFRAEA  231 (259)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~ll~~~gi~~~~g~~f~~~~  231 (259)
                      ++++++++.+.+.|++++              +....+.  ..++.+ .....+. ++...+++++||.+++|.... .+
T Consensus       281 ~~~~~~~~~l~~~L~~~~--------------~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~gi~v~~g~~~~-~~  344 (376)
T 3f0h_A          281 ARIASQAADFRAKIKDLP--------------FELVSESPANGVTSV-HPTTANAYDIFLKLKDEYGIWICPNGGEM-KD  344 (376)
T ss_dssp             HHHHHHHHHHHHHTTTSS--------------EEECCSSBBTTEEEE-EESSSCHHHHHHHHHHHSSEECEECCGGG-TT
T ss_pred             HHHHHHHHHHHHHHHHcC--------------CccCccccCceEEEE-eCCCCCHHHHHHHHHHhCCEEEecCcccc-CC
Confidence            888888888888887653              2222221  222222 2233334 445555544499999984322 45


Q ss_pred             CeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          232 RFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       232 ~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      +++|+++..  +++++++++++|++++++
T Consensus       345 ~~lRis~~~~~t~e~i~~~~~~l~~~l~~  373 (376)
T 3f0h_A          345 TIFRVGHIGALTHEDNTTLVNAFKDLQKR  373 (376)
T ss_dssp             TCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            899999963  899999999999999875

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.88  E-value=2e-21  Score=168.63  Aligned_cols=242  Identities=14%  Similarity=0.121  Sum_probs=159.2

Q ss_pred             CCCcccchhhh----hhccCcccccc-cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc
Q 024997            1 MPFYPLYQEQT----DYFESVDYKFE-GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~~~~~~~----~~~g~~~~~~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~   70 (259)
                      +|+|+.+...+    ...|.++..+. .|+++|++.++++++++++++|+||||.++     .++|+++|+++|+|++|.
T Consensus       111 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~  190 (398)
T 1gc0_A          111 NTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYC  190 (398)
T ss_dssp             SSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTT
T ss_pred             CCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCc
Confidence            47787776655    44555543332 377889999988999999999999999987     389999999999999992


Q ss_pred             CCC-CCCCCCCCCCeEEEeccccccCCCcceE-EEEEecCHHHHH-HHHHhhhh-hcCCCCHHHHHHHHHHHHHHHhcCC
Q 024997           71 WPH-FAPIPAPADEELMIFTISKLTGHAGSRF-GWAVIKDEAVYQ-RMSAYISL-NTMGVSRECQLRAFKLLKVVLEDGG  146 (259)
Q Consensus        71 ~~~-~~~~~~~~~~~i~~~S~SK~~g~~G~R~-G~i~~~~~~~~~-~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~  146 (259)
                      ... ..++  ..+.++++.|+||.++.+|.|+ ||++++ +++++ .+...... .+...+++.++++.+.++       
T Consensus       191 ~~~~~~~~--~~~~d~~~~S~sK~~~~~~~~~~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------  260 (398)
T 1gc0_A          191 TPYLQRPL--ELGADLVVHSATKYLSGHGDITAGIVVGS-QALVDRIRLQGLKDMTGAVLSPHDAALLMRGIK-------  260 (398)
T ss_dssp             HHHHCCGG--GGTCSEEEEETTTTTTCSSSCCCEEEEEC-HHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHT-------
T ss_pred             ccccCCch--hhCceEEEECCccccCCCCCCeEEEEEEC-hHHHHHHHHHHhhccCCCCCCHHHHHHHHhccc-------
Confidence            000 0111  2346899999999999999998 999998 57665 56555544 455678887777766665       


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc-cccceeeCC---CCCeeEEEecCCCchHHHHHHHHHcCeeee
Q 024997          147 NNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQY-CTYFKKIRP---PSPAYAWVKCEREEDKDCYGILKAAKIIGR  222 (259)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~  222 (259)
                        .+..+.++..++...+.+.|++++.+.....+... ...+....+   ..+.++.+.++. +.+....++++.++.++
T Consensus       261 --~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~l~~~~i~~~  337 (398)
T 1gc0_A          261 --TLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG-GIGAGRRFMNALQLFSR  337 (398)
T ss_dssp             --THHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT-HHHHHHHHHHHCSSSEE
T ss_pred             --hHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC-CHHHHHHHHHhCCCcee
Confidence              34556778888999999999886543211111100 001111221   234455556654 24567788888898876


Q ss_pred             c---CCc----------------------ccCCCCeEEEEeec--ChhhHHHHHHHHHHH
Q 024997          223 E---GKK----------------------FRAEARFVRLSLLK--SQDDFDLLLHRLDEL  255 (259)
Q Consensus       223 ~---g~~----------------------f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~  255 (259)
                      .   |..                      .+.+++.+|+|++.  ++++++.+.+.|+++
T Consensus       338 ~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~  397 (398)
T 1gc0_A          338 AVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS  397 (398)
T ss_dssp             CSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence            5   321                      01125899999987  445566666666543

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.87  E-value=1.4e-21  Score=170.83  Aligned_cols=209  Identities=11%  Similarity=0.073  Sum_probs=146.7

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhh-H--------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeEEE
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQM-N--------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEELMI   87 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~-~--------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i~~   87 (259)
                      .|+++|++.+++++++|++++++||+|.+ +        .++|+++|+++|+||+|  |......+.    +....++  
T Consensus       189 ~d~~~le~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii--  266 (420)
T 2pb2_A          189 NDLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL--  266 (420)
T ss_dssp             TCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--
T ss_pred             CCHHHHHHHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE--
Confidence            37889999998889998888888888852 2        38999999999999999  322111111    2222232  


Q ss_pred             eccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHH
Q 024997           88 FTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKI  167 (259)
Q Consensus        88 ~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
                       ||||.++ +|+|+||++++ +++++.+.......+++.+++.|.++.+.++..    .+   ++..++++++++.+.+.
T Consensus       267 -t~sK~l~-~G~~iG~~~~~-~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~----~~---~~~~~~~~~~~~~l~~~  336 (420)
T 2pb2_A          267 -TSAKALG-GGFPVSAMLTT-QEIASAFHVGSHGSTYGGNPLACAVAGAAFDII----NT---PEVLQGIHTKRQQFVQH  336 (420)
T ss_dssp             -EECGGGG-TTSCCEEEEEC-HHHHTTCC----CCEECCCHHHHHHHHHHHHHH----SS---HHHHHHHHHHHHHHHHH
T ss_pred             -Eeccccc-CCCceEEEEEh-HHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHH----Hh---ccHHHHHHHHHHHHHHH
Confidence             7899999 89999999999 688877765434456788999999999888853    11   34577888888888888


Q ss_pred             HHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---chHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cCh
Q 024997          168 ISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQ  242 (259)
Q Consensus       168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~  242 (259)
                      |+++..    .++     .+....+. |.+++++++..   +.+.+.+.|.++||.++|+.     ++++||++.  .++
T Consensus       337 L~~~~~----~~~-----~~~~~~~~-g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~-----~~~iRl~~~~~~t~  401 (420)
T 2pb2_A          337 LQAIDE----QFD-----IFSDIRGM-GLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAG-----ADVMRFAPSLVVEE  401 (420)
T ss_dssp             HHHHHH----HHC-----CEEEEEEE-TTEEEEEECGGGTTCHHHHHHHHHHTTEECEESS-----TTEEEECCCTTCCH
T ss_pred             HHHHHh----cCC-----CeEEEEec-ceEEEEEECCCchHHHHHHHHHHHHCCCEEEeCC-----CCEEEEECCCCCCH
Confidence            876420    011     02223333 56677887643   23444455556899999863     579999964  499


Q ss_pred             hhHHHHHHHHHHHhhh
Q 024997          243 DDFDLLLHRLDELISK  258 (259)
Q Consensus       243 ~~~~~~~~~l~~~l~~  258 (259)
                      +++++++++|++++++
T Consensus       402 eei~~~~~~l~~~l~~  417 (420)
T 2pb2_A          402 ADIHEGMQRFAQAVGK  417 (420)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998764

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.87  E-value=1.1e-21  Score=167.36  Aligned_cols=211  Identities=9%  Similarity=-0.055  Sum_probs=146.3

Q ss_pred             ccccChhhhcccCCCCceEEEEcCCCCCC-hhhH--------HHhhcCCCcEEEeecccc-CC---CCCCCCC-CCCCeE
Q 024997           20 KFEGEANLWGNASSDTHLVEFVTAPNNPD-GQMN--------KAVLKGPYAKSIYDHAYF-WP---HFAPIPA-PADEEL   85 (259)
Q Consensus        20 ~~~~d~~~l~~~~~~~~~~i~i~~p~NPt-G~~~--------~~la~~~~~~vi~De~y~-~~---~~~~~~~-~~~~~i   85 (259)
                      .+.+|+++|++. .++++++++++||||+ |.++        .++|+++|+++|+|++|. ..   ....... .....+
T Consensus       123 ~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~  201 (359)
T 3pj0_A          123 NQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDS  201 (359)
T ss_dssp             TSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSE
T ss_pred             CCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCE
Confidence            357789999988 7789999999999998 5765        378999999999999882 10   0111100 122345


Q ss_pred             EEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCC--CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 024997           86 MIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMG--VSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWEN  163 (259)
Q Consensus        86 ~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (259)
                      ++.|+||.++.++ . ||++.+ +++++.+..........  ...+.+.++...++.        .. +..+++.++++.
T Consensus       202 ~~~s~sK~~~~~~-g-g~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--------~~-~~~~~~~~~~~~  269 (359)
T 3pj0_A          202 VYVSFYKGIGGIA-G-AILAGN-DDFVQEAKIWKRRYGGDLISLYPYILSADYYFEK--------RI-GKMAEYFEAAKG  269 (359)
T ss_dssp             EEEESSSTTCCSS-C-EEEEEC-HHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH--------HG-GGHHHHHHHHHH
T ss_pred             EEEeccccCCCcc-e-EEEECC-HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH--------HH-HHhHHHHHHHHH
Confidence            6679999887553 2 888888 79999988765433222  233334444444542        12 234457788888


Q ss_pred             HHHHHHhcCCCccccccccccccceee-CCCCCeeEEEecCCC---chHHHHHHHHHcCeeeecCCcccC-CCCeEEEEe
Q 024997          164 LSKIISLSNRFSLQEIAPQYCTYFKKI-RPPSPAYAWVKCERE---EDKDCYGILKAAKIIGREGKKFRA-EARFVRLSL  238 (259)
Q Consensus       164 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~  238 (259)
                      +.+.|+++++             +... .+..+.++|++++..   +.+.+.+.|.++||.++||..|+. +.+++|+++
T Consensus       270 l~~~L~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i  336 (359)
T 3pj0_A          270 LAERFNSCSG-------------VKTVPEVPVSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSV  336 (359)
T ss_dssp             HHHHHHTSTT-------------EEEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEEC
T ss_pred             HHHHHhhCCC-------------ceeeccCCcceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEe
Confidence            9999987654             4443 456778888888653   245666777789999999987774 457899998


Q ss_pred             e-----cChhhHHHHHHHHHHHh
Q 024997          239 L-----KSQDDFDLLLHRLDELI  256 (259)
Q Consensus       239 ~-----~~~~~~~~~~~~l~~~l  256 (259)
                      +     .+.+++++++++|.+.+
T Consensus       337 ~~~~~~~~~e~l~~~l~~l~~~l  359 (359)
T 3pj0_A          337 GDAFAEIPAKNLELVFRCLEKEL  359 (359)
T ss_dssp             CTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             cCccccCCHHHHHHHHHHHHhcC
Confidence            5     27889999999998753

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.87  E-value=9.6e-22  Score=172.54  Aligned_cols=209  Identities=10%  Similarity=0.026  Sum_probs=140.4

Q ss_pred             ChhhhcccC----CCCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCC--CCCC--CCCCCe
Q 024997           24 EANLWGNAS----SDTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHF--APIP--APADEE   84 (259)
Q Consensus        24 d~~~l~~~~----~~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~--~~~~--~~~~~~   84 (259)
                      |+++|++.+    .++++++++++++|++|.+.         .++|+++|+++|+||+|  |....  ....  +.... 
T Consensus       186 d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~d-  264 (439)
T 3dxv_A          186 ILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPD-  264 (439)
T ss_dssp             HHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCS-
T ss_pred             HHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCC-
Confidence            578888887    45678877777788888874         28899999999999999  42211  1111  22222 


Q ss_pred             EEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 024997           85 LMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENL  164 (259)
Q Consensus        85 i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (259)
                        +.||||.++ +|+|+||++++ +++++.+.......++ .+++.|.++.++++...   .++    ..++++++.+.+
T Consensus       265 --i~s~sK~~~-~G~riG~~~~~-~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~---~~~----~~~~~~~~~~~~  332 (439)
T 3dxv_A          265 --ILVLGKGLG-GGLPLSAVIAP-AEILDCASAFAMQTLH-GNPISAAAGLAVLETID---RDD----LPAMAERKGRLL  332 (439)
T ss_dssp             --EEEECGGGG-TTSCCEEEEEE-HHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHH---HTT----HHHHHHHHHHHH
T ss_pred             --EEEEcchhc-CCcceEEEEEC-HHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHH---hcC----HHHHHHHHHHHH
Confidence              239999999 69999999999 7999888765545566 89999999888887531   122    355566666666


Q ss_pred             HHHHHhcCCCccccccccccccceeeCCCCCeeEEEecC--------CC-chHHHHHHHHHcCeeeecCCcccCCCCeEE
Q 024997          165 SKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCE--------RE-EDKDCYGILKAAKIIGREGKKFRAEARFVR  235 (259)
Q Consensus       165 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~R  235 (259)
                      .+.|+++..    .++     .+...++ .|.++++.+.        .. ....+.+.+.++||.++|+..   .++++|
T Consensus       333 ~~~l~~~~~----~~~-----~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~iR  399 (439)
T 3dxv_A          333 RDGLSELAK----RHP-----LIGDIRG-RGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGM---NGNVLE  399 (439)
T ss_dssp             HHHHHHHHH----HCT-----TEEEEEE-ETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEEST---TSCEEE
T ss_pred             HHHHHHHHH----hCC-----CeEEEEE-EEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCC---CCCEEE
Confidence            666654320    000     0222333 3556666652        11 123334444467999999743   248999


Q ss_pred             EEee--cChhhHHHHHHHHHHHhhh
Q 024997          236 LSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       236 is~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      |+++  .+++++++++++|++++++
T Consensus       400 i~~~~~~t~e~i~~~l~~l~~~l~~  424 (439)
T 3dxv_A          400 FTPPLTITETDIHKALDLLDRAFSE  424 (439)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHH
Confidence            9864  3899999999999998763

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.86  E-value=6.8e-22  Score=174.35  Aligned_cols=211  Identities=14%  Similarity=0.033  Sum_probs=139.6

Q ss_pred             hhhcccCCCCceEEEEcCCCCCChhhH----------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEecccc
Q 024997           26 NLWGNASSDTHLVEFVTAPNNPDGQMN----------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFTISK   92 (259)
Q Consensus        26 ~~l~~~~~~~~~~i~i~~p~NPtG~~~----------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~SK   92 (259)
                      +.|++.+.+++.++++++|+||+|.+.          .++|+++|+++|+||+|  |+....... ...+....+.||||
T Consensus       215 ~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK  294 (453)
T 4ffc_A          215 SRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAK  294 (453)
T ss_dssp             HHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECG
T ss_pred             HHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhh
Confidence            556666666666668889998887443          38999999999999999  322111111 11122223568999


Q ss_pred             ccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcC
Q 024997           93 LTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSN  172 (259)
Q Consensus        93 ~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (259)
                      .++. |+|+||++++ +++++.+.......+++.+++.|+++.++++...   .+++    .++++++.+++.+.|+++.
T Consensus       295 ~~~~-G~~~G~~~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~~~~----~~~~~~~~~~l~~~l~~~~  365 (453)
T 4ffc_A          295 GIAG-GMPLSAVTGR-AELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMR---ELDL----PARARAIEASVTSRLSALA  365 (453)
T ss_dssp             GGGT-TSSCEEEEEE-HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHH---HTTH----HHHHHHHHHHHHHHHHHHH
T ss_pred             hhcC-CcCeEEEEEC-HHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhh---hhhH----HHHHHHHHHHHHHHHHHHH
Confidence            9984 9999999999 7999988776666788999999999999988531   1233    4444555555555554321


Q ss_pred             CCccccccccccccceeeCCCCCeeEEEecCC-----C---chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--Ch
Q 024997          173 RFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-----E---EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQ  242 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~  242 (259)
                          ..++     .+....+ .|.++|+.+..     .   ....+...+.++||.++|+..|+   +++|+++..  ++
T Consensus       366 ----~~~~-----~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~---~~iRi~~~~~~t~  432 (453)
T 4ffc_A          366 ----EEVD-----IIGEVRG-RGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFG---NVIRLLPPLVIGD  432 (453)
T ss_dssp             ----HHCS-----SEEEEEE-ETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECTTS---CEEEECCCTTCCH
T ss_pred             ----hhCC-----CeEEEEe-eceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCCCC---CEEEEECCCCCCH
Confidence                0000     0222233 35667776632     1   12334445557899999975543   689998653  89


Q ss_pred             hhHHHHHHHHHHHhhh
Q 024997          243 DDFDLLLHRLDELISK  258 (259)
Q Consensus       243 ~~~~~~~~~l~~~l~~  258 (259)
                      +++++++++|++++++
T Consensus       433 e~i~~~l~~l~~~l~~  448 (453)
T 4ffc_A          433 DLLDEGITALSDIIRA  448 (453)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998763

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.86  E-value=2.2e-21  Score=165.99  Aligned_cols=204  Identities=13%  Similarity=0.050  Sum_probs=144.7

Q ss_pred             CCCCceEEEEcCCCCCChhhHHHhhcCCCcEEEeecccc-CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHH
Q 024997           32 SSDTHLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAYF-WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEA  110 (259)
Q Consensus        32 ~~~~~~~i~i~~p~NPtG~~~~~la~~~~~~vi~De~y~-~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~  110 (259)
                      ++++++++++++|+||||.+++.+.+-+|+++|+|++|. +.....+   .+..+++.|+||.+|++|  +||++++ ++
T Consensus       139 i~~~t~~v~~~~~~n~tG~~~~~l~~i~~~~vivD~a~~~~~~~~~~---~~~d~~~~s~~K~~g~~G--~G~l~~~-~~  212 (362)
T 2c0r_A          139 LQDNAAYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFDL---NQFGLVYAGAQKNLGPSG--VTVVIVR-ED  212 (362)
T ss_dssp             CCTTEEEEEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCCG---GGCSEEEEETTTTTCCSS--CEEEEEE-GG
T ss_pred             cCCCcCEEEEeCCcCccceecccccccCCCEEEEEChhhccCCccch---hHCcEEEEeccccccCcC--cEEEEEc-HH
Confidence            677899999999999999975444444899999999993 2111112   122688899999999889  9999999 58


Q ss_pred             HHHHHHHh------------hhhhcCCCCHHHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHHHHHHhcCCC-cc
Q 024997          111 VYQRMSAY------------ISLNTMGVSRECQLRAFKLLKVVLEDGGNN-IFEFGYNTMKKRWENLSKIISLSNRF-SL  176 (259)
Q Consensus       111 ~~~~~~~~------------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~-~~  176 (259)
                      +++.+...            .......++.+.|.++..+++..    .+. .+++.+++++++++.+.+.|++++++ .+
T Consensus       213 ~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  288 (362)
T 2c0r_A          213 LVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWI----EERGGLEGVQQANRKKASLIYDAIDQSGGFYRG  288 (362)
T ss_dssp             GSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHH----HHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEE
T ss_pred             HHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHH----HHhCCHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence            77655431            11223467778888888888742    111 56788899999999999999876521 11


Q ss_pred             ccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHH
Q 024997          177 QEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLD  253 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~  253 (259)
                      .  .+        ....++.++++.++.. +.+.+.+.|+++||.+++|..+   .+++|+|++.  +.++++.+++.|+
T Consensus       289 ~--~~--------~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~---~~~iRis~~~~~~~e~i~~l~~~l~  355 (362)
T 2c0r_A          289 C--VD--------VDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRS---VGGLRASIYNAVPYESCEALVQFME  355 (362)
T ss_dssp             S--SC--------GGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTT---TCSEEEECCTTSCHHHHHHHHHHHH
T ss_pred             C--CC--------hHHcCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCC---CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            0  00        0122455678877642 3445555677889999988766   3679999975  7899999999999


Q ss_pred             HHhhh
Q 024997          254 ELISK  258 (259)
Q Consensus       254 ~~l~~  258 (259)
                      +++++
T Consensus       356 ~~~~~  360 (362)
T 2c0r_A          356 HFKRS  360 (362)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88753

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.86  E-value=1.3e-20  Score=164.21  Aligned_cols=216  Identities=12%  Similarity=0.033  Sum_probs=150.3

Q ss_pred             cccChhhhcccCC-CCceEEEEcCCCCCChhhHH---HhhcCCCcEEEeecccc-----CCCCCCCCCCCCCeEEEeccc
Q 024997           21 FEGEANLWGNASS-DTHLVEFVTAPNNPDGQMNK---AVLKGPYAKSIYDHAYF-----WPHFAPIPAPADEELMIFTIS   91 (259)
Q Consensus        21 ~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~~---~la~~~~~~vi~De~y~-----~~~~~~~~~~~~~~i~~~S~S   91 (259)
                      +.+|+++|++.+. +++++|++++|+||+..-+.   ++|+++|+++|+||+|+     .......  .....++++|+|
T Consensus       157 ~~~d~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~--~~~~di~~~s~s  234 (425)
T 3ecd_A          157 MLIDYDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP--VEHAHVVTSTTH  234 (425)
T ss_dssp             SSCCHHHHHHHHHHHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--GGTCSEEEEESS
T ss_pred             CccCHHHHHHHHhhcCCcEEEEccccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCc--hhcCcEEEecCC
Confidence            6788999999885 57899999999998766663   88999999999999962     2211111  112358899999


Q ss_pred             cccCCCcceEEEEEecCHHHHHHHHHhhhhhcC-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh
Q 024997           92 KLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTM-GVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISL  170 (259)
Q Consensus        92 K~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  170 (259)
                      |.+  +|.|.||++++++++.+.+......... +++...+.++..++...    ....+.+.+++++++++.+.+.|++
T Consensus       235 K~l--~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~----~~~~~~~~~~~~~~~~~~l~~~L~~  308 (425)
T 3ecd_A          235 KTL--RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEA----LTDDFKTYIDRVLANAQALGDVLKA  308 (425)
T ss_dssp             GGG--CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHH----TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccc--CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            998  5788999999865777777665443222 34444444444444431    3345677888899999999999987


Q ss_pred             cCCCccccccccccccceeeC-CCCCeeEEEecCCC--chHHHHHHHHHcCeeee----cCCcccC-CCCeEEEEeec--
Q 024997          171 SNRFSLQEIAPQYCTYFKKIR-PPSPAYAWVKCERE--EDKDCYGILKAAKIIGR----EGKKFRA-EARFVRLSLLK--  240 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~----~g~~f~~-~~~~~Ris~~~--  240 (259)
                      .+              +.... +.++.++|+.+...  +.+.+.+.|+++||.++    ||..+.. ..+.+|+++..  
T Consensus       309 ~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~  374 (425)
T 3ecd_A          309 GG--------------VDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGT  374 (425)
T ss_dssp             TT--------------CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHH
T ss_pred             CC--------------CeeccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhhe
Confidence            43              23333 24677888887642  46777888888999999    4433222 24689999532  


Q ss_pred             ----ChhhHHHHHHHHHHHhhh
Q 024997          241 ----SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       241 ----~~~~~~~~~~~l~~~l~~  258 (259)
                          ++++++++++.|++++++
T Consensus       375 ~~~~~~e~i~~~~~~l~~~l~~  396 (425)
T 3ecd_A          375 TRGFGAAEFREVGRLILEVFEA  396 (425)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eccCCHHHHHHHHHHHHHHHhc
Confidence                378999999999888753

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.86  E-value=2e-20  Score=162.07  Aligned_cols=206  Identities=13%  Similarity=0.075  Sum_probs=144.2

Q ss_pred             CCCCceEEEEcCCCCCChhhHH--HhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCH
Q 024997           32 SSDTHLVEFVTAPNNPDGQMNK--AVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDE  109 (259)
Q Consensus        32 ~~~~~~~i~i~~p~NPtG~~~~--~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~  109 (259)
                      +++++++|++++|+||||.+++  ++++.+|+++|+|++|.... ..+ +..+.+++++|+||.+|.+| ++||++++ +
T Consensus       162 i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~vivD~a~~~~~-~~~-~~~~~di~~~s~sK~~~~~g-g~g~l~~~-~  237 (398)
T 2fyf_A          162 TDPSVDVIAWAHNETSTGVAVAVRRPEGSDDALVVIDATSGAGG-LPV-DIAETDAYYFAPQKNFASDG-GLWLAIMS-P  237 (398)
T ss_dssp             CCTTCSEEEEESEETTTTEECCCCCCTTCC-CEEEEECTTTTTT-SCC-CGGGCSEEEECTTSTTCSCS-SEEEEEEC-H
T ss_pred             ccCCCCEEEEeCcCCCcceecchHHhhhhcCCeEEEEeccccCC-ccc-CcccCcEEEEecCcccCCCC-ceEEEEEC-H
Confidence            5678899999999999999985  56666999999999993111 111 11235689999999999775 59999999 6


Q ss_pred             HHHHHHHHhh---------------------hhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 024997          110 AVYQRMSAYI---------------------SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKII  168 (259)
Q Consensus       110 ~~~~~~~~~~---------------------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (259)
                      ++++.++...                     ......++...+.++..+++...+   ...+++.+++++++++.+.+.|
T Consensus       238 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~---~g~~~~~~~~~~~~~~~l~~~L  314 (398)
T 2fyf_A          238 AALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVG---NGGLDWAVKRTADSSQRLYSWA  314 (398)
T ss_dssp             HHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH---HTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHHH
Confidence            8888775421                     011234556666667667764211   1126778889999999999999


Q ss_pred             HhcCCCccccccccccccceeeC--C--CCCeeEEEecCC-CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--C
Q 024997          169 SLSNRFSLQEIAPQYCTYFKKIR--P--PSPAYAWVKCER-EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--S  241 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~-~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~  241 (259)
                      +++++             +....  +  .+++++|++++. .+.+.+.+.|.++||.+++|... .+.+++|||++.  +
T Consensus       315 ~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~-~~~~~iRis~~~~~t  380 (398)
T 2fyf_A          315 QERPY-------------TTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRANGIVDTEPYRK-LGRNQLRVAMFPAVE  380 (398)
T ss_dssp             HHSTT-------------EEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHHHTTCBCCSCCTT-TCSSEEEEECCTTSC
T ss_pred             HHcCC-------------ceeccCChhhcCCcEEEEECCCCCCHHHHHHHHHHCCcEEecCccc-CCCCEEEEEecCCCC
Confidence            88753             22221  2  345588888853 34445555555679999987322 235899999974  8


Q ss_pred             hhhHHHHHHHHHHHhhh
Q 024997          242 QDDFDLLLHRLDELISK  258 (259)
Q Consensus       242 ~~~~~~~~~~l~~~l~~  258 (259)
                      ++++++++++|++++++
T Consensus       381 ~e~i~~~~~~l~~~l~~  397 (398)
T 2fyf_A          381 PDDVSALTECVDWVVER  397 (398)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998764

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.86  E-value=2.8e-21  Score=167.49  Aligned_cols=234  Identities=9%  Similarity=0.056  Sum_probs=148.3

Q ss_pred             hhhhccCccccccc-ChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCC----CcEEEeeccccCCCCCCCCC
Q 024997           10 QTDYFESVDYKFEG-EANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGP----YAKSIYDHAYFWPHFAPIPA   79 (259)
Q Consensus        10 ~~~~~g~~~~~~~~-d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~----~~~vi~De~y~~~~~~~~~~   79 (259)
                      .++..|.++..+.. | ++|++.+++++++|++++||||||.++     .++|+++    |+++|+|++|-....... .
T Consensus       113 ~~~~~G~~v~~v~~~d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~~~-~  190 (393)
T 1n8p_A          113 VANAHGVETSFTNDLL-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNP-L  190 (393)
T ss_dssp             TSTTTCSCCEEESSHH-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCG-G
T ss_pred             HHHHcCcEEEEeCCCh-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccCCH-H
Confidence            33445665543333 5 788888888899999999999999998     3889999    999999999920000011 1


Q ss_pred             CCCCeEEEeccccccCCCcceE-EEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 024997           80 PADEELMIFTISKLTGHAGSRF-GWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMK  158 (259)
Q Consensus        80 ~~~~~i~~~S~SK~~g~~G~R~-G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  158 (259)
                      ..+.+++++|+||.+|.+|+|+ ||+++.++++++.+.......+...++..+.++...++         .+....++..
T Consensus       191 ~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~---------~~~~~~~~~~  261 (393)
T 1n8p_A          191 NFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLK---------TLHLRVRQAA  261 (393)
T ss_dssp             GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---------THHHHHHHHH
T ss_pred             HcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc---------hHHHHHHHHH
Confidence            1247899999999999999999 99998436899988877665555566766665555554         3455677778


Q ss_pred             HHHHHHHHHHHhcCC-Cccccccccc-ccc---ceeeCCC-C-CeeEEEecCCCchHHHHHHHHH---cCeeeecCC---
Q 024997          159 KRWENLSKIISLSNR-FSLQEIAPQY-CTY---FKKIRPP-S-PAYAWVKCEREEDKDCYGILKA---AKIIGREGK---  225 (259)
Q Consensus       159 ~~~~~~~~~l~~~~~-~~~~~~~~~~-~~~---~~~~~~~-~-~~~~~~~~~~~~~~~~~~ll~~---~gi~~~~g~---  225 (259)
                      ++...+.+.|++.+. +.....+... ...   +...... . +..+++.++.. ......+++.   .++.+..|.   
T Consensus       262 ~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-~~~~~~~l~~l~~~~~~~s~G~~~s  340 (393)
T 1n8p_A          262 LSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG-AEAASKFASSTRLFTLAESLGGIES  340 (393)
T ss_dssp             HHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC-HHHHHHHHHHCSSSEECSCCCCSSC
T ss_pred             HHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCc-HHHHHHHHhhCCcceECCCCCCCcc
Confidence            888888888887643 2111111100 000   0000011 2 55678888653 2334444443   344554442   


Q ss_pred             -------cc------------cCCCCeEEEEeec--ChhhHHHHHHHHHHH
Q 024997          226 -------KF------------RAEARFVRLSLLK--SQDDFDLLLHRLDEL  255 (259)
Q Consensus       226 -------~f------------~~~~~~~Ris~~~--~~~~~~~~~~~l~~~  255 (259)
                             .+            +.+.+.+|+|++.  ++++++.+.+.|+++
T Consensus       341 ~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~  391 (393)
T 1n8p_A          341 LLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             EEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             eeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence                   11            1125789999987  455567777776654

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.86  E-value=2.3e-21  Score=170.81  Aligned_cols=214  Identities=14%  Similarity=0.086  Sum_probs=141.5

Q ss_pred             hhhhcccCC----CCceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEE
Q 024997           25 ANLWGNASS----DTHLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMI   87 (259)
Q Consensus        25 ~~~l~~~~~----~~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~   87 (259)
                      +++|++.+.    +++++++++.+ +| ||.++         .++|+++|+++|+||+|  |+....... ...+....+
T Consensus       201 ~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di  279 (452)
T 3n5m_A          201 VKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDI  279 (452)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSE
T ss_pred             HHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCE
Confidence            677888775    46777677666 89 99765         28899999999999999  422111111 111212224


Q ss_pred             eccccccCCCc-ceEEEEEecCHHHHHHHHH------hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 024997           88 FTISKLTGHAG-SRFGWAVIKDEAVYQRMSA------YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKR  160 (259)
Q Consensus        88 ~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  160 (259)
                      .||||.++. | +|+||++++ +++++.+..      .....+++.+++.|+++.++++...   .++    ..++++++
T Consensus       280 ~t~sK~l~~-G~~~ig~~~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~~~----~~~~~~~~  350 (452)
T 3n5m_A          280 ITMAKGITS-AYLPLSATAVK-REIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIE---NEN----LIERSAQM  350 (452)
T ss_dssp             EEECGGGGT-TSSCCEEEEEE-HHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHH---HTT----HHHHHHHH
T ss_pred             EeecccccC-CCcceEEEEEC-HHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHH---hcc----HHHHHHHH
Confidence            579999984 9 999999999 799988843      1234567889999999999888531   122    35556666


Q ss_pred             HHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-c---------hHHHHHHHHHcCeeeecCCcccC-
Q 024997          161 WENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-E---------DKDCYGILKAAKIIGREGKKFRA-  229 (259)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~ll~~~gi~~~~g~~f~~-  229 (259)
                      .+.+.+.|+++..    .++     .+....+. |.++++.+... .         ...+.+.+.++||.++|+..|.. 
T Consensus       351 ~~~l~~~L~~~~~----~~~-----~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~  420 (452)
T 3n5m_A          351 GSLLLEQLKEEIG----EHP-----LVGDIRGK-GLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAG  420 (452)
T ss_dssp             HHHHHHHHHHHHT----TCT-----TEEEEEES-SSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTT
T ss_pred             HHHHHHHHHHHHh----cCC-----CeEEEEEE-EEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCC
Confidence            6666666655310    000     12333444 44555555221 0         12344455578999999887654 


Q ss_pred             CCCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          230 EARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       230 ~~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      .++++||+++  .+++++++++++|++++++
T Consensus       421 ~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  451 (452)
T 3n5m_A          421 YNNILTLAPPLVISSEEIAFVIGTLKTAMER  451 (452)
T ss_dssp             CCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            3689999754  4999999999999998864

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.86  E-value=1e-21  Score=172.08  Aligned_cols=214  Identities=16%  Similarity=0.046  Sum_probs=142.8

Q ss_pred             ChhhhcccCC----CCceEEEEcCCC-CCChhh-H--------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEE
Q 024997           24 EANLWGNASS----DTHLVEFVTAPN-NPDGQM-N--------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELM   86 (259)
Q Consensus        24 d~~~l~~~~~----~~~~~i~i~~p~-NPtG~~-~--------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~   86 (259)
                      |++.|++.++    +++++ ++++|+ ||||.+ +        .++|+++|+++|+||+|  |+....... +..+....
T Consensus       188 d~~~le~~l~~~~~~~~~~-vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~d  266 (433)
T 1zod_A          188 ELDYAFDLIDRQSSGNLAA-FIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPD  266 (433)
T ss_dssp             HHHHHHHHHHHHCCSCEEE-EEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS
T ss_pred             HHHHHHHHHHhcCCCCeEE-EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCC
Confidence            5778888774    45566 666775 889964 3        28899999999999999  421111111 10011112


Q ss_pred             EeccccccCCCcceEEEEEecCHHHHHHHHHhhhh--hcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 024997           87 IFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL--NTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENL  164 (259)
Q Consensus        87 ~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (259)
                      +.|+||.++ .|+|+||++++ +++++.+......  .+.+.+++.|.++.++++...+   ++    ..++++++++.+
T Consensus       267 i~s~sK~~~-~G~~ig~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~---~~----~~~~~~~~~~~l  337 (433)
T 1zod_A          267 ILTLSKTLG-AGLPLAAIVTS-AAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR---DG----LVARANVMGDRL  337 (433)
T ss_dssp             EEEECHHHH-TTSSCEEEEEC-HHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH---TT----HHHHHHHHHHHH
T ss_pred             EEEeccccc-CCCCeeEEEEh-HHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh---CC----HHHHHHHHHHHH
Confidence            459999999 49999999999 6999988763222  5677899999998888875321   12    356677777777


Q ss_pred             HHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---------chHHHHHHHHHcCeeeecCCcccCCCCeEE
Q 024997          165 SKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---------EDKDCYGILKAAKIIGREGKKFRAEARFVR  235 (259)
Q Consensus       165 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ll~~~gi~~~~g~~f~~~~~~~R  235 (259)
                      .+.|+++..    .++     .+...++. |.++|+++...         ....+.+.|.++||.+.||..|+ .++++|
T Consensus       338 ~~~l~~l~~----~~~-----~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~-~~~~lR  406 (433)
T 1zod_A          338 RRGLLDLME----RFD-----CIGDVRGR-GLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG-MGGVFR  406 (433)
T ss_dssp             HHHHHHHHH----HCT-----TEEEEEEE-TTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTT-SCCEEE
T ss_pred             HHHHHHHHH----hCC-----CeEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCC-CCCEEE
Confidence            777765420    000     02223333 56667776531         13334444447899999988775 358999


Q ss_pred             EEee--cChhhHHHHHHHHHHHhhh
Q 024997          236 LSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       236 is~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      |+++  .+++++++++++|++++++
T Consensus       407 i~~~~~~t~~~i~~~l~~l~~~l~~  431 (433)
T 1zod_A          407 IAPPLTVSEDEIDLGLSLLGQAIER  431 (433)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EECCcCCCHHHHHHHHHHHHHHHHH
Confidence            9764  4899999999999998753

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.86  E-value=2.8e-21  Score=168.10  Aligned_cols=216  Identities=12%  Similarity=0.031  Sum_probs=152.1

Q ss_pred             cCcccccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc-cCCCCCCCCCCCCCeEEEe
Q 024997           15 ESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY-FWPHFAPIPAPADEELMIF   88 (259)
Q Consensus        15 g~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y-~~~~~~~~~~~~~~~i~~~   88 (259)
                      |.++..+.. +++|++.++++++++++++|+||||.++     .++|+++|+++|+|++| ++.....+ ...+.++++.
T Consensus       146 g~~~~~v~~-~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~-~~~~~d~~~~  223 (416)
T 1qz9_A          146 GYTLRLVDS-PEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDL-HQAGADYAIG  223 (416)
T ss_dssp             SCEEEEESS-GGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCH-HHHTCSEEEE
T ss_pred             CceEEEeCc-HHHHHHHhCCCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCCh-hhcCCCEEEe
Confidence            655543333 7889988888899999999999999987     38899999999999999 32111111 1123578999


Q ss_pred             ccccccCCCcceE-EEEEecCHHHHHHHHHhh-----------------------hhhcCCCCHHHHHHHHHHHHHHHhc
Q 024997           89 TISKLTGHAGSRF-GWAVIKDEAVYQRMSAYI-----------------------SLNTMGVSRECQLRAFKLLKVVLED  144 (259)
Q Consensus        89 S~SK~~g~~G~R~-G~i~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~q~~~~~~l~~~~~~  144 (259)
                      |+||.++ .|.++ |+++++ +++++.+....                       ......++...+.++..+++..   
T Consensus       224 s~~K~l~-~g~~~~g~l~~~-~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---  298 (416)
T 1qz9_A          224 CTYKYLN-GGPGSQAFVWVS-PQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVF---  298 (416)
T ss_dssp             CSSSTTC-CCTTCCCEEEEC-TTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHH---
T ss_pred             cCcccCC-CCCCCeEEEEEC-HHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHH---
Confidence            9999984 67777 999999 47776654321                       1112235666666666777643   


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhc-C--CCccccccccccccceeeCCC----CCeeEEEecCCCchHHHHHHHHHc
Q 024997          145 GGNNIFEFGYNTMKKRWENLSKIISLS-N--RFSLQEIAPQYCTYFKKIRPP----SPAYAWVKCEREEDKDCYGILKAA  217 (259)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ll~~~  217 (259)
                       ....+++.+++++++++.+.+.|+++ +  +             +....+.    .+.++|+.++.  .+.+.+.|.++
T Consensus       299 -~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~  362 (416)
T 1qz9_A          299 -AQTDMASLRRKSLALTDLFIELVEQRCAAHE-------------LTLVTPREHAKRGSHVSFEHPE--GYAVIQALIDR  362 (416)
T ss_dssp             -TTSCHHHHHHHHHHHHHHHHHHHHHHHTTSC-------------CEECSCSSGGGBCSEEEEECTT--HHHHHHHHHTT
T ss_pred             -HhcCHHHHHHHHHHHHHHHHHHHHhhccCCC-------------eEEeCCCCHHHcCCEEEEecCC--HHHHHHHHHhC
Confidence             22356778889999999999999875 3  2             2222332    24568888864  34455555578


Q ss_pred             CeeeecCCcccCCCCeEEEEeec---ChhhHHHHHHHHHHHhhh
Q 024997          218 KIIGREGKKFRAEARFVRLSLLK---SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       218 gi~~~~g~~f~~~~~~~Ris~~~---~~~~~~~~~~~l~~~l~~  258 (259)
                      ||.+..     .+.+++||+++.   +++++++++++|++++++
T Consensus       363 gi~~~~-----~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~  401 (416)
T 1qz9_A          363 GVIGDY-----REPRIMRFGFTPLYTTFTEVWDAVQILGEILDR  401 (416)
T ss_dssp             TEECEE-----ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CcEecc-----CCCCeEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence            998753     235899999973   899999999999998764

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.85  E-value=1.1e-20  Score=166.59  Aligned_cols=232  Identities=12%  Similarity=0.068  Sum_probs=149.6

Q ss_pred             CCc-ccchhhhhhccCccc----------------ccccChhhhcccCCCCc----eEEEEcCCCC-CChhhH-------
Q 024997            2 PFY-PLYQEQTDYFESVDY----------------KFEGEANLWGNASSDTH----LVEFVTAPNN-PDGQMN-------   52 (259)
Q Consensus         2 P~y-~~~~~~~~~~g~~~~----------------~~~~d~~~l~~~~~~~~----~~i~i~~p~N-PtG~~~-------   52 (259)
                      |+| +.|...+...|.++.                ++.+|+++|++.+++++    +++++++|+| |||.++       
T Consensus       120 ~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~  199 (456)
T 2ez2_A          120 NMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRA  199 (456)
T ss_dssp             SSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHH
T ss_pred             ccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHH
Confidence            677 777777777776541                25678899998885443    8889999999 999876       


Q ss_pred             -HHhhcCCCcEEEeeccc-cC---------CCCCCCC--------CCCCCeEEEeccccccCCCcceEEEEEecCHHHHH
Q 024997           53 -KAVLKGPYAKSIYDHAY-FW---------PHFAPIP--------APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQ  113 (259)
Q Consensus        53 -~~la~~~~~~vi~De~y-~~---------~~~~~~~--------~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~  113 (259)
                       .++|+++|+++|+||+| ++         .......        .....++++ |++|.++ +| |.||++++++++++
T Consensus       200 i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~-S~kk~~~-~~-~gG~~~~~~~~~~~  276 (456)
T 2ez2_A          200 VRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTM-SGKKDCL-VN-IGGFLCMNDDEMFS  276 (456)
T ss_dssp             HHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEE-ETTTTTC-CS-SCEEEEESCHHHHH
T ss_pred             HHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEE-eCcccCC-CC-ceeEEEECCHHHHH
Confidence             28899999999999998 31         1111110        112234444 7888865 67 78999984378988


Q ss_pred             HHHHhhhhh-----cCCCCHHHHHH-HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q 024997          114 RMSAYISLN-----TMGVSRECQLR-AFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYF  187 (259)
Q Consensus       114 ~~~~~~~~~-----~~~~~~~~q~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  187 (259)
                      .+.......     ..+.+.....+ +...++.     .+   ++..++.+++.+.+.+.|++.+              +
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~-----~~---~~~~~~~~~~~~~l~~~L~~~g--------------~  334 (456)
T 2ez2_A          277 SAKELVVVYEGMPSYGGLAGRDMEAMAIGLREA-----MQ---YEYIEHRVKQVRYLGDKLKAAG--------------V  334 (456)
T ss_dssp             HHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHH-----TC---HHHHHHHHHHHHHHHHHHHHTT--------------C
T ss_pred             HHHHHHhhccCcccccCcchhHHHHHHHHHHHH-----hH---HHHHHHHHHHHHHHHHHHhcCC--------------C
Confidence            887654321     12233322222 3333331     11   2334445555666777776532              3


Q ss_pred             eeeCCCCCeeEEEecC----CCc-hHH-----HHHHHHHcCeeeec-CCccc-----------CCCCeEEEEee---cCh
Q 024997          188 KKIRPPSPAYAWVKCE----REE-DKD-----CYGILKAAKIIGRE-GKKFR-----------AEARFVRLSLL---KSQ  242 (259)
Q Consensus       188 ~~~~~~~~~~~~~~~~----~~~-~~~-----~~~ll~~~gi~~~~-g~~f~-----------~~~~~~Ris~~---~~~  242 (259)
                      ....|.+++++|+++.    ..+ .++     ...+++++||.+.+ |..|.           .+.+++|||++   .++
T Consensus       335 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~  414 (456)
T 2ez2_A          335 PIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTY  414 (456)
T ss_dssp             CBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCH
T ss_pred             ccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCH
Confidence            3446778899999863    222 333     44454788999776 54331           12478999997   589


Q ss_pred             hhHHHHHHHHHHHhhh
Q 024997          243 DDFDLLLHRLDELISK  258 (259)
Q Consensus       243 ~~~~~~~~~l~~~l~~  258 (259)
                      +++++++++|++++++
T Consensus       415 e~i~~~~~~l~~~l~~  430 (456)
T 2ez2_A          415 AHMDVVADGIIKLYQH  430 (456)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999988753

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.85  E-value=5.2e-21  Score=162.54  Aligned_cols=225  Identities=12%  Similarity=0.049  Sum_probs=145.4

Q ss_pred             CCCccc-ch--hhhhhccCccc-----ccccChhhhcccCCC------CceEEEEcCCCCCC-hhhH--------HHhhc
Q 024997            1 MPFYPL-YQ--EQTDYFESVDY-----KFEGEANLWGNASSD------THLVEFVTAPNNPD-GQMN--------KAVLK   57 (259)
Q Consensus         1 ~P~y~~-~~--~~~~~~g~~~~-----~~~~d~~~l~~~~~~------~~~~i~i~~p~NPt-G~~~--------~~la~   57 (259)
                      +|+|+. |.  ..++..|.++.     .+.+|+++|++.+++      ++++|++++||||| |.++        .++|+
T Consensus        84 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~  163 (347)
T 1jg8_A           84 ADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAK  163 (347)
T ss_dssp             TTCHHHHSSTTHHHHHTCCEEEEECEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHH
T ss_pred             CcchhhhccccchhhccCeEEEEecCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHH
Confidence            366643 33  14455566542     234688999998864      68999999999999 9875        27889


Q ss_pred             CCCcEEEeeccc-cC-----C-CCCCCCCCCCCeEEEeccccccCCCcceEE-EEEecCHHHHHHHHHhhhhhcC--CCC
Q 024997           58 GPYAKSIYDHAY-FW-----P-HFAPIPAPADEELMIFTISKLTGHAGSRFG-WAVIKDEAVYQRMSAYISLNTM--GVS  127 (259)
Q Consensus        58 ~~~~~vi~De~y-~~-----~-~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G-~i~~~~~~~~~~~~~~~~~~~~--~~~  127 (259)
                      ++|+++|+|++| |+     + ....+....+  .++.|+||.++.+   +| |++.+ +++++++.........  ..+
T Consensus       164 ~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d--~~~~s~sK~l~~~---~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~  237 (347)
T 1jg8_A          164 EHGINVHIDGARIFNASIASGVPVKEYAGYAD--SVMFCLSKGLCAP---VGSVVVGD-RDFIERARKARKMLGGGMRQA  237 (347)
T ss_dssp             HHTCEEEEEETTHHHHHHHHCCCHHHHHHTCS--EEEEESSSTTCCS---SCEEEEEC-HHHHHHHHHHHHHHTCCCSST
T ss_pred             HCCCEEEeehhhhhcchhhcCCChHHhccccc--EEEEecccccCCC---ceEEEEcC-HHHHHHHHHHHHHcCCchhHH
Confidence            999999999987 31     1 1111111122  3456899999743   57 56667 7898888766544332  234


Q ss_pred             HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC--C
Q 024997          128 RECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--E  205 (259)
Q Consensus       128 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  205 (259)
                      ...+.++...++.     ....+    ++..++++.+.+.|+++ ++.+.            ..+..+.++|++++.  .
T Consensus       238 ~~~~~~~~~~l~~-----~~~~~----~~~~~~~~~l~~~L~~~-~~~~~------------~~~~~~~~~~~~~~~~~~  295 (347)
T 1jg8_A          238 GVLAAAGIIALTK-----MVDRL----KEDHENARFLALKLKEI-GYSVN------------PEDVKTNMVILRTDNLKV  295 (347)
T ss_dssp             HHHHHHHHHHHHH-----SSTTH----HHHHHHHHHHHHHHHHH-TCBCC------------GGGCCSSEEEEECTTSSS
T ss_pred             HHHHHHHHHHHHH-----HHHHH----HHHHHHHHHHHHHHHhc-Cceec------------cCCCcceEEEEEcccccC
Confidence            5566666666663     22222    22345667778888765 32110            123456678998873  3


Q ss_pred             chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          206 EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       206 ~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      +.+.+.+.|.++||.++++.     .+++|+++..  +++++++++++|++++++
T Consensus       296 ~~~~~~~~l~~~gi~v~~~~-----~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~  345 (347)
T 1jg8_A          296 NAHGFIEALRNSGVLANAVS-----DTEIRLVTHKDVSRNDIEEALNIFEKLFRK  345 (347)
T ss_dssp             CHHHHHHHHHHHTEECEEEE-----TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCEEecCC-----CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence            34444444557899999842     4789999853  899999999999998753

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.85  E-value=1.6e-20  Score=159.70  Aligned_cols=226  Identities=12%  Similarity=0.020  Sum_probs=146.6

Q ss_pred             CCcccchhh--hhhc--cCcc-----cccccChhhhcc-cCCC-------CceEEEEcCCCCCChhhH--------HHhh
Q 024997            2 PFYPLYQEQ--TDYF--ESVD-----YKFEGEANLWGN-ASSD-------THLVEFVTAPNNPDGQMN--------KAVL   56 (259)
Q Consensus         2 P~y~~~~~~--~~~~--g~~~-----~~~~~d~~~l~~-~~~~-------~~~~i~i~~p~NPtG~~~--------~~la   56 (259)
                      |+|+.+...  +...  |.++     ..+.+|+++|++ .+++       ++++|++++||| ||.++        .++|
T Consensus        91 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~  169 (356)
T 1v72_A           91 ASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVC  169 (356)
T ss_dssp             TSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHH
T ss_pred             ccchhhhhchHHHHHhCCcEEEEecCCCCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHH
Confidence            555544433  4444  6554     235678899999 8864       689999999987 99865        2889


Q ss_pred             cCCCcEEEeecccc-------CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcC-CC-C
Q 024997           57 KGPYAKSIYDHAYF-------WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTM-GV-S  127 (259)
Q Consensus        57 ~~~~~~vi~De~y~-------~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~-~~-~  127 (259)
                      +++|+++|+|++|.       +.....+.-.....+++.|+||. |. ....||++++ +++++.+......... .. +
T Consensus       170 ~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~-~~G~g~~~~~-~~~~~~~~~~~~~~~~~~~~~  246 (356)
T 1v72_A          170 KSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GV-LAAEAIVLFN-TSLATEMSYRRKRAGHLSSKM  246 (356)
T ss_dssp             HHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TC-SSCEEEEESS-GGGHHHHHHHHHHTTCCCSST
T ss_pred             HHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CC-cCccEEEEEC-HHHHhhHHHHhhccCchhhhH
Confidence            99999999999982       11111110001233556699998 43 2223488887 6888887665432221 11 2


Q ss_pred             HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCch
Q 024997          128 RECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREED  207 (259)
Q Consensus       128 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (259)
                      ...+..+...++       +....+..++++++++.+.+.|+++++             +....+.+++++|++++   .
T Consensus       247 ~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~l~~~L~~~~g-------------~~~~~~~~~~~~~~~~~---~  303 (356)
T 1v72_A          247 RFLSAQIDAYLT-------DDLWLRNARKANAAAQRLAQGLEGLGG-------------VEVLGGTEANILFCRLD---S  303 (356)
T ss_dssp             HHHHHHHHHHTS-------TTHHHHHHHHHHHHHHHHHHHHTTCTT-------------EEEESCCCSSEEEEEEC---H
T ss_pred             HHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHhhCCC-------------cEEccCCCccEEEEEcC---H
Confidence            222222222332       123344567778888888888876543             44445678889999875   3


Q ss_pred             HHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          208 KDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       208 ~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      ++... |.++||.++||. |+  ++++|+++..  +++++++++++|++++++
T Consensus       304 ~~~~~-l~~~gi~v~~g~-~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~  352 (356)
T 1v72_A          304 AMIDA-LLKAGFGFYHDR-WG--PNVVRFVTSFATTAEDVDHLLNQVRLAADR  352 (356)
T ss_dssp             HHHHH-HHHTTCBCBCSS-SS--TTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred             HHHHH-HHhcCeEEeccc-cC--CCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            44444 457899999987 55  5899999864  889999999999988764

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.85  E-value=1.3e-20  Score=166.46  Aligned_cols=211  Identities=14%  Similarity=0.078  Sum_probs=135.1

Q ss_pred             hhhhcccCC----CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEe
Q 024997           25 ANLWGNASS----DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIF   88 (259)
Q Consensus        25 ~~~l~~~~~----~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~   88 (259)
                      .++|++.+.    +++++|+++.++|++|.+.         .++|+++|+++|+||+|  |+....... ...+....+.
T Consensus       207 ~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~  286 (460)
T 3gju_A          207 ADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLI  286 (460)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEE
T ss_pred             HHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCee
Confidence            467777774    4566655555566777643         38999999999999999  422111111 1111111245


Q ss_pred             ccccccCCCc-ceEEEEEecCHHHHHHHHHh-------hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 024997           89 TISKLTGHAG-SRFGWAVIKDEAVYQRMSAY-------ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKR  160 (259)
Q Consensus        89 S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  160 (259)
                      ||||.++ .| +|+||++++ +++++.+...       ....+++.+++.|+++.++++...   .++++++.++..+..
T Consensus       287 t~sK~l~-gG~~~lg~v~~~-~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~~~~~~~~~~~~~~~  361 (460)
T 3gju_A          287 TIAKGLT-SAYAPLSGVIVA-DRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELID---EMDLVTNAGETGAYF  361 (460)
T ss_dssp             EECGGGT-TTSSCCEEEEEE-HHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHH
T ss_pred             eeehhhc-CCCCCeEEEEEC-HHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHH---hccHHHHHHHHHHHH
Confidence            7999997 56 899999999 7999998642       334578899999999999998531   123444444444444


Q ss_pred             HHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-c-----------hHHHHHHHHHcCeeeecCCccc
Q 024997          161 WENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-E-----------DKDCYGILKAAKIIGREGKKFR  228 (259)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~ll~~~gi~~~~g~~f~  228 (259)
                      ++.+.+.++.++.             +....+. |.++++.+... .           ...+.+.+.++||.++|+.   
T Consensus       362 ~~~l~~~l~~~~~-------------~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---  424 (460)
T 3gju_A          362 RAELAKAVGGHKN-------------VGEVRGD-GMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP---  424 (460)
T ss_dssp             HHHHHHHHTTSTT-------------EEEEEEE-TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS---
T ss_pred             HHHHHHHHhcCCC-------------eEEEeee-eEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC---
Confidence            4444444443331             2333444 44555555421 0           2234455557899999964   


Q ss_pred             CCCCeEEEEe--ecChhhHHHHHHHHHHHhhh
Q 024997          229 AEARFVRLSL--LKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       229 ~~~~~~Ris~--~~~~~~~~~~~~~l~~~l~~  258 (259)
                       ..+++||++  ..+++++++++++|++++++
T Consensus       425 -~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  455 (460)
T 3gju_A          425 -QGDILGFAPPLCLTREQADIVVSKTADAVKS  455 (460)
T ss_dssp             -SSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence             348999995  45999999999999998763

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.85  E-value=3.9e-20  Score=161.17  Aligned_cols=242  Identities=14%  Similarity=0.067  Sum_probs=153.9

Q ss_pred             CCCcccchhh----hhhccCcccccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccC
Q 024997            1 MPFYPLYQEQ----TDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFW   71 (259)
Q Consensus         1 ~P~y~~~~~~----~~~~g~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~   71 (259)
                      +|.|+.....    ++..|.++..+..|+++|++.+++++++|++++|+||||.++     .++|+++|+++|+|++|-.
T Consensus       102 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~  181 (412)
T 2cb1_A          102 KGLFGQTIGLFGQVLSLMGVTVRYVDPEPEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGA  181 (412)
T ss_dssp             TTCCHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGT
T ss_pred             CCCchhHHHHHHHHHHHcCCEEEEECCCHHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCcc
Confidence            3666654433    333566666667778999999988999999999999999997     3899999999999999931


Q ss_pred             CCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecC-H--------------------------HHHHHHHHhh-hhhc
Q 024997           72 PHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKD-E--------------------------AVYQRMSAYI-SLNT  123 (259)
Q Consensus        72 ~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~-~--------------------------~~~~~~~~~~-~~~~  123 (259)
                      ......+...+.++++.|+||.++.+|.|+|++++.+ +                          ++.+.++... ....
T Consensus       182 ~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g  261 (412)
T 2cb1_A          182 AGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCG  261 (412)
T ss_dssp             TTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTC
T ss_pred             ccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcC
Confidence            1111111124578999999999988999999988763 1                          3445554433 2222


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc----cceeeCCCCCeeEE
Q 024997          124 MGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCT----YFKKIRPPSPAYAW  199 (259)
Q Consensus       124 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  199 (259)
                      ...++...+.+...++         .+....++..++.+.+.+.|++.+++.....++....    ..+......+..+.
T Consensus       262 ~~~~~~~a~~~~~~l~---------~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~  332 (412)
T 2cb1_A          262 MALSPFNAYLLFQGLE---------TVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILT  332 (412)
T ss_dssp             CCCCHHHHHHHHHHGG---------GHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEE
T ss_pred             CCCChHHhHHHHcCCc---------hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEE
Confidence            3344544443333333         3445566677888889999988765432211110000    00000012344566


Q ss_pred             EecCCCchHHHHHHHHHcCeeeecCC---------ccc----------------CCCCeEEEEeec--ChhhHHHHHHHH
Q 024997          200 VKCEREEDKDCYGILKAAKIIGREGK---------KFR----------------AEARFVRLSLLK--SQDDFDLLLHRL  252 (259)
Q Consensus       200 ~~~~~~~~~~~~~ll~~~gi~~~~g~---------~f~----------------~~~~~~Ris~~~--~~~~~~~~~~~l  252 (259)
                      +.+ . +.+.+..++++.||.+ .++         .+.                ..++.+|+|++.  ++++++.+.+.|
T Consensus       333 ~~~-~-~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al  409 (412)
T 2cb1_A          333 LDL-G-DLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEAL  409 (412)
T ss_dssp             EEC-S-SHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred             EEe-C-CHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHH
Confidence            677 4 5677888888899998 764         221                115899999987  445566666665


Q ss_pred             HH
Q 024997          253 DE  254 (259)
Q Consensus       253 ~~  254 (259)
                      ++
T Consensus       410 ~~  411 (412)
T 2cb1_A          410 EA  411 (412)
T ss_dssp             HC
T ss_pred             hh
Confidence            43

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.85  E-value=3.9e-21  Score=170.46  Aligned_cols=236  Identities=9%  Similarity=-0.003  Sum_probs=164.3

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhh-H-----HHhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQM-N-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~-~-----~~la~~~~~~vi~De~   68 (259)
                      +|+|+.|...++..|.++.      .+.+|+++|++.+++++++|++++| ||||.+ .     .++|+++|+++|+|++
T Consensus       163 ~~~h~~~~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea  241 (474)
T 1wyu_B          163 DSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGA  241 (474)
T ss_dssp             TTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGG
T ss_pred             CCcChhhHHHHHHCCCEEEEecCCCCCCcCHHHHHHhhCCCceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCc
Confidence            4788999988888887652      3467899999999888999999998 689987 2     3899999999999999


Q ss_pred             ccCCCCCCCC-CCCCCeEEEeccccccCCC-c---ceEEEEEecCHHHHHHHHH-hh------------------hhhcC
Q 024997           69 YFWPHFAPIP-APADEELMIFTISKLTGHA-G---SRFGWAVIKDEAVYQRMSA-YI------------------SLNTM  124 (259)
Q Consensus        69 y~~~~~~~~~-~~~~~~i~~~S~SK~~g~~-G---~R~G~i~~~~~~~~~~~~~-~~------------------~~~~~  124 (259)
                      |......... ...+.++++.|+||.|+.+ |   .|+||++++ +++++.+.. ..                  .....
T Consensus       242 ~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~-~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~  320 (474)
T 1wyu_B          242 NLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVK-AHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSF  320 (474)
T ss_dssp             GGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEEC-GGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSST
T ss_pred             hhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEEEc-HHHHHhCCCCeeeccCCeeEecccCcccCcccccC
Confidence            9311111111 1224688999999999766 4   599999999 477766541 10                  01122


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCee-EEEecC
Q 024997          125 GVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAY-AWVKCE  203 (259)
Q Consensus       125 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  203 (259)
                      +.+.+.+.++..++...    ..+.+.+..+++.++++++.+.|+++ ++.+             ..+...++ .|++++
T Consensus       321 ~~~~~~~~aa~~~l~~~----g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~-------------~~~~~~~~~~~~~~~  382 (474)
T 1wyu_B          321 YGNFLALVRAWAYIRTL----GLEGLKKAAALAVLNARYLKELLKEK-GYRV-------------PYDGPSMHEFVAQPP  382 (474)
T ss_dssp             TSCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHT-TCBC-------------SSCSSCCSCEEEBCS
T ss_pred             cCcHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhc-CcEe-------------cCCCCcceEEEEEcC
Confidence            35677788777777642    23467777888999999999999876 3221             11111121 455553


Q ss_pred             C-CchHHHHHHHHHcCeeeecCCcccC-CCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          204 R-EEDKDCYGILKAAKIIGREGKKFRA-EARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       204 ~-~~~~~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      . .+...+.+.|.++||.+ ++..|+. ..+++||+++.  +++++++++++|+++++
T Consensus       383 ~~~~~~~l~~~L~~~Gi~~-~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~  439 (474)
T 1wyu_B          383 EGFRALDLAKGLLELGFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLK  439 (474)
T ss_dssp             TTCCHHHHHHHHHHTTCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHCCccc-cccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence            2 23344444444679985 6666653 35899999986  88999999999998875

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.85  E-value=1.4e-20  Score=164.72  Aligned_cols=207  Identities=11%  Similarity=0.013  Sum_probs=143.2

Q ss_pred             ccChhhhcccCC---CCceEEEEcCC--CCCChhhH---------HHhhcCCCcEEEeeccc--cCCC--CCCCC--CCC
Q 024997           22 EGEANLWGNASS---DTHLVEFVTAP--NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPH--FAPIP--APA   81 (259)
Q Consensus        22 ~~d~~~l~~~~~---~~~~~i~i~~p--~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~--~~~~~--~~~   81 (259)
                      .+|+++|++.++   +++++ ++++|  |||||.+.         .++|+++|+++|+||+|  |+..  ...+.  +..
T Consensus       188 ~~d~~~l~~~l~~~~~~~~~-vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~  266 (429)
T 1s0a_A          188 ERDMVGFARLMAAHRHEIAA-VIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIA  266 (429)
T ss_dssp             GGGGHHHHHHHHHHTTTEEE-EEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred             HHHHHHHHHHHHhCCCCEEE-EEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCC
Confidence            378888888875   45566 56666  58999643         38899999999999999  4221  11111  222


Q ss_pred             CCeEEEeccccccCCCc-ceEEEEEecCHHHHHHHHHhh-----hhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q 024997           82 DEELMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAYI-----SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYN  155 (259)
Q Consensus        82 ~~~i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~  155 (259)
                      ..   +.|+||.++ .| +|+||++++ +++++.+....     ...+++++++.|.++.++++...   .    +...+
T Consensus       267 ~d---~~t~sK~l~-~G~~~iG~~~~~-~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~---~----~~~~~  334 (429)
T 1s0a_A          267 PD---ILCLGKALT-GGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILE---S----GDWQQ  334 (429)
T ss_dssp             CS---EEEECGGGG-TSSSCCEEEEEC-HHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHH---T----CHHHH
T ss_pred             CC---EEEeccccc-CCCccceEEEeC-HHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHH---h----CCHHH
Confidence            22   338999998 68 999999999 69988887531     23467789999999988887431   1    13467


Q ss_pred             HHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCCCeE
Q 024997          156 TMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEARFV  234 (259)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~  234 (259)
                      +++++++.+.+.|+++..     ++.     +....+. |.++|++++.. +.+.+...|.++||.+++.      .+++
T Consensus       335 ~~~~~~~~l~~~L~~l~~-----~~~-----~~~~~~~-g~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~------~~~i  397 (429)
T 1s0a_A          335 QVADIEVQLREQLAPARD-----AEM-----VADVRVL-GAIGVVETTHPVNMAALQKFFVEQGVWIRPF------GKLI  397 (429)
T ss_dssp             HHHHHHHHHHHHHGGGGG-----CTT-----EEEEEEE-TTEEEEEESSCBCHHHHHHHHHHTTEECCCB------TTEE
T ss_pred             HHHHHHHHHHHHHHHHhc-----CCC-----EEEEEEe-eEEEEEEECCcccHHHHHHHHHHCCCEEecc------CCEE
Confidence            788888888888876531     111     2223333 55788888652 3444444455789999883      2789


Q ss_pred             EEEee--cChhhHHHHHHHHHHHhhh
Q 024997          235 RLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       235 Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      ||+++  .+++++++++++|++++++
T Consensus       398 Ris~~~~~t~e~i~~~~~~l~~~~~~  423 (429)
T 1s0a_A          398 YLMPPYIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            99964  4999999999999998753

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.85  E-value=2.4e-20  Score=166.91  Aligned_cols=230  Identities=10%  Similarity=0.030  Sum_probs=160.4

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY   69 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y   69 (259)
                      +|+|+.|...++..|..+.      .+.+|+++|++.+++++++|++++|+||||.+.     .++|+++|+++|+|++|
T Consensus       199 ~~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~  278 (514)
T 3mad_A          199 VSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACL  278 (514)
T ss_dssp             TTSCTHHHHHHHHHTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTT
T ss_pred             CccchHHHHHHHHcCCeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEeccc
Confidence            4889999999998887652      346789999999988999999999999999997     38999999999999998


Q ss_pred             cC----------CCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh----------hhcC-CCC
Q 024997           70 FW----------PHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS----------LNTM-GVS  127 (259)
Q Consensus        70 ~~----------~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~----------~~~~-~~~  127 (259)
                      -+          .....+. ...+.++++.|++|.++ .|.++|++++.+ +..........          .... ..+
T Consensus       279 ~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gs~~  356 (514)
T 3mad_A          279 GGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGY-GAKGTSVILYRR-PDLLHYQYFIAADWPGGLYFSPTFAGSRP  356 (514)
T ss_dssp             TTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTC-CCSSCEEEEESS-HHHHTTTCEEESSCTTCSEEESSSCSSCC
T ss_pred             ccccchhHHhcCCCCCcccccCCCCcEEEECchhccC-CCCCeEEEEEeC-HHHhccccccccccCCCcccCCccCCCCc
Confidence            21          0011222 23456889999999964 678899999986 44332211000          0001 111


Q ss_pred             ---HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC
Q 024997          128 ---RECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER  204 (259)
Q Consensus       128 ---~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (259)
                         ...+.++...+.       ...+.+..+++.++++++.+.|+++++             +....+..+ ++++....
T Consensus       357 ~~~~~a~~aal~~l~-------~~~~~~~~~~~~~~~~~l~~~L~~~~g-------------~~~~~~~~~-~~~~~~~~  415 (514)
T 3mad_A          357 GALSATAWAAMLSLG-------EEGYLDATRRILQAADRLKAGVRAIPS-------------LKILGDPLW-VIAVASDE  415 (514)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTSTT-------------CEESSCCSS-EEEEECSS
T ss_pred             hHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHhhCCC-------------eEEeCCCeE-EEEEeCCC
Confidence               233444444443       235677888899999999999987654             333344433 66666655


Q ss_pred             CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec---ChhhHHHHHHHHHHHhh
Q 024997          205 EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK---SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       205 ~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~---~~~~~~~~~~~l~~~l~  257 (259)
                      .+...+.+.|.++||.+ +|..+   ++.+|++++.   +++++++++++|+++++
T Consensus       416 ~~~~~l~~~L~~~Gi~v-~g~~~---~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~  467 (514)
T 3mad_A          416 LNIYQVMEEMAGRGWRL-NGLHR---PPAFHVALTLRHTEPGVVDRFLADLQDAVA  467 (514)
T ss_dssp             SCHHHHHHHHHTTTCBC-EEETT---TTEEEEECCGGGGSTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCEe-ccCCC---CCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            55555666666789988 55544   3689999973   56899999999998875

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.85  E-value=8.5e-20  Score=162.64  Aligned_cols=231  Identities=9%  Similarity=-0.003  Sum_probs=161.2

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~   68 (259)
                      +|+|+.+...++..|.++.       .+.+|+++|++.+++++++|++++|+||||.+.+     ++|+++|+++|+|++
T Consensus       165 ~~~h~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a  244 (497)
T 3mc6_A          165 VTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSC  244 (497)
T ss_dssp             TTSCHHHHHHHHHSCCEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETT
T ss_pred             CCccHHHHHHHHHcCCeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECc
Confidence            4788999999998887652       4578899999999889999999999999999983     899999999999999


Q ss_pred             cc------C--CCCC---CCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCC----CC-----
Q 024997           69 YF------W--PHFA---PIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMG----VS-----  127 (259)
Q Consensus        69 y~------~--~~~~---~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~----~~-----  127 (259)
                      |-      .  ....   .+. ...+.++++.|++|.++ .|.++|++++.+ +..............+    .+     
T Consensus       245 ~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~  322 (497)
T 3mc6_A          245 LGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGF-APKGSSVIMYRN-SDLRMHQYYVNPAWTGGLYGSPTLAGS  322 (497)
T ss_dssp             TTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTC-CCSSCEEEECSS-HHHHTTTSCCBTTCTTSCBCCSSSCSS
T ss_pred             chhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcC-CCCCceeEEecC-HHHHhhhhcccccccCCCcCCcCcccC
Confidence            92      0  1111   121 23456788999999864 678899999986 4443332111100000    00     


Q ss_pred             -----HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh-cCCCccccccccccccceeeCCCCCeeEEEe
Q 024997          128 -----RECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISL-SNRFSLQEIAPQYCTYFKKIRPPSPAYAWVK  201 (259)
Q Consensus       128 -----~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (259)
                           ...+.++...+..       ..+.+..++..++.+.+.+.|++ +++             +....+..+.++++.
T Consensus       323 ~~~~~~~a~~aal~~l~~-------~~~~~~~~~~~~~~~~l~~~L~~~~~g-------------~~~~~~~~~~~v~~~  382 (497)
T 3mc6_A          323 RPGAIVVGCWATMVNMGE-------NGYIESCQEIVGAAMKFKKYIQENIPD-------------LDIMGNPRYSVISFS  382 (497)
T ss_dssp             CBHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHSCTT-------------CEECSCCCSSEEEEE
T ss_pred             CcchhHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHhcCCC-------------EEEecCCCeeEEEEe
Confidence                 3345556555542       24566788888999999999998 454             333333344444555


Q ss_pred             cCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHhh
Q 024997          202 CEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       202 ~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l~  257 (259)
                      ....+...+.+.|.++||.++++..    +..+|++++. +.+++++++++|+++++
T Consensus       383 ~~~~~~~~l~~~L~~~Gi~v~~~~~----~~~~ri~~~~~t~e~i~~~~~~L~~~l~  435 (497)
T 3mc6_A          383 SKTLNIHELSDRLSKKGWHFNALQK----PVALHMAFTRLSAHVVDEICDILRTTVQ  435 (497)
T ss_dssp             CTTTTHHHHHHHHHTTTCBCEECCS----SCCEEEECCTTTTCTHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhCCEEEecCCC----CCeEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            5544555666666678998876432    3468999976 88999999999998875

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.84  E-value=1.3e-19  Score=157.91  Aligned_cols=242  Identities=10%  Similarity=0.042  Sum_probs=151.7

Q ss_pred             CCcccchhhh----hhccCcccccc-cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcC--CCcEEEeeccc
Q 024997            2 PFYPLYQEQT----DYFESVDYKFE-GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKG--PYAKSIYDHAY   69 (259)
Q Consensus         2 P~y~~~~~~~----~~~g~~~~~~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~--~~~~vi~De~y   69 (259)
                      |.|+.....+    +..|.++..+. .|+++|++++++++++|++++|+||||.++     .++|++  +|+++|+|++|
T Consensus       129 ~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~  208 (415)
T 2fq6_A          129 TAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTW  208 (415)
T ss_dssp             TSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTT
T ss_pred             CCchHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCC
Confidence            4555444333    23455543222 378899999998999999999999999998     389999  99999999998


Q ss_pred             cCCCCCCCCCCCCCeEEEeccccccCCCcce-EEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcc
Q 024997           70 FWPHFAPIPAPADEELMIFTISKLTGHAGSR-FGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNN  148 (259)
Q Consensus        70 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R-~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  148 (259)
                      -.+ ....+-..+.++++.|+||.+|.+|.+ .||++++ +++++.+...........++...+.+...++         
T Consensus       209 a~~-~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~-~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~---------  277 (415)
T 2fq6_A          209 AAG-VLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCN-ARCWEQLRENAYLMGQMVDADTAYITSRGLR---------  277 (415)
T ss_dssp             TTT-TSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEEC-TTTHHHHHHHHHHTTCCCCHHHHHHHHHHHH---------
T ss_pred             ccc-ccCCccccCCeEEEEeCccccCCCCCceEEEEEeC-HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh---------
Confidence            211 111111234689999999999988765 5999988 4888888776654445556655554444444         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCccccccc---cccc-cceeeCCCCCeeEEEecCCC-chHHHHHHHHHc---Cee
Q 024997          149 IFEFGYNTMKKRWENLSKIISLSNRFSLQEIAP---QYCT-YFKKIRPPSPAYAWVKCERE-EDKDCYGILKAA---KII  220 (259)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~---gi~  220 (259)
                      .+..+.++..++...+.+.|++.+.+.....+.   .... .........+..+++.++.. +.+....+++..   ++.
T Consensus       278 ~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a  357 (415)
T 2fq6_A          278 TLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMA  357 (415)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEe
Confidence            455567778888999999998875432111111   0000 00000012455677778752 234455555544   355


Q ss_pred             eecCCc--------------------ccCCCCeEEEEeec--ChhhHHHHHHHHHH
Q 024997          221 GREGKK--------------------FRAEARFVRLSLLK--SQDDFDLLLHRLDE  254 (259)
Q Consensus       221 ~~~g~~--------------------f~~~~~~~Ris~~~--~~~~~~~~~~~l~~  254 (259)
                      +..|+.                    ++...+.+|||++.  +++.++.+.+.|++
T Consensus       358 ~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~  413 (415)
T 2fq6_A          358 YSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR  413 (415)
T ss_dssp             SCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred             ccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence            555521                    22235799999987  34445666565553

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.84  E-value=3.5e-20  Score=160.68  Aligned_cols=231  Identities=12%  Similarity=0.011  Sum_probs=156.1

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~   68 (259)
                      +|+|+.+...++..|.++.       .+.+|+++|++.+++++++++   |+||||.+.     .++|+++|+++|+|++
T Consensus       110 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea  186 (399)
T 2oga_A          110 SHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALL---PVHLYGHPADMDALRELADRHGLHIVEDAA  186 (399)
T ss_dssp             SSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECT
T ss_pred             CCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECc
Confidence            4889999988888887652       357888999999988888755   678999876     3889999999999999


Q ss_pred             cc-CC--CCCCCCCCCCCeEEEecc--ccccCCCcceEEEEEecCHHHHHHHHHhhhhh------------cCCCCHHHH
Q 024997           69 YF-WP--HFAPIPAPADEELMIFTI--SKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN------------TMGVSRECQ  131 (259)
Q Consensus        69 y~-~~--~~~~~~~~~~~~i~~~S~--SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~q  131 (259)
                      |- +.  ....+...  .++++.|+  ||.+|.+| |.||++++++++++.+.......            ....+++.+
T Consensus       187 ~~~g~~~~~~~~~~~--~di~~~S~~~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~  263 (399)
T 2oga_A          187 QAHGARYRGRRIGAG--SSVAAFSFYPGKNLGCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQA  263 (399)
T ss_dssp             TCTTCEETTEETTCT--TCEEEEECCTTSSSCCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHH
T ss_pred             ccccCccCCeecccc--cCEEEEeCCCCccCCcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHH
Confidence            92 11  11111111  26889998  79999779 99999987568888887654421            124567766


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEE--EecCCCchHH
Q 024997          132 LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAW--VKCEREEDKD  209 (259)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  209 (259)
                      .++...++         .+++..++.+++.+.+.+.|++++++.+.            ..+.++.++|  +.+...+.+.
T Consensus       264 a~~~~~l~---------~~~~~~~~~~~~~~~l~~~L~~~~g~~~~------------~~~~~~~~~~~~~~~~~~~~~~  322 (399)
T 2oga_A          264 AVLRIRLA---------HLDSWNGRRSALAAEYLSGLAGLPGIGLP------------VTAPDTDPVWHLFTVRTERRDE  322 (399)
T ss_dssp             HHHHHHHH---------THHHHHHHHHHHHHHHHHHTTTCTTCBCC------------CCCTTEECCCSSEEEECSSHHH
T ss_pred             HHHHHHHH---------HHHHHHHHHHHHHHHHHHHhccCCCcccc------------CCCCCCcceeEEEEEECCCHHH
Confidence            66666665         23334555666677777777765432211            1233444444  2222224555


Q ss_pred             HHHHHHHcCeeeecCCcccC---------C-------------CCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          210 CYGILKAAKIIGREGKKFRA---------E-------------ARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       210 ~~~ll~~~gi~~~~g~~f~~---------~-------------~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      +.+.|.++||.++++.....         +             .+.+||++..  ++++++.+++.|++++++
T Consensus       323 l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  395 (399)
T 2oga_A          323 LRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAER  395 (399)
T ss_dssp             HHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            66666678999987532100         0             2579999864  899999999999988753

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.84  E-value=2.2e-20  Score=161.21  Aligned_cols=237  Identities=11%  Similarity=0.034  Sum_probs=157.9

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~   68 (259)
                      +|+|+.+...++..|.++.       .+.+|+++|++.+++++++|+   |+||||.+.     .++|+++|+++|+|++
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a  161 (388)
T 1b9h_A           85 AFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAA  161 (388)
T ss_dssp             SSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECT
T ss_pred             CCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecc
Confidence            4889999988888887652       356888999999988888755   999999887     3889999999999999


Q ss_pred             cc-CC--CCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHH--HHHHHHhhhhh---------------cCCCCH
Q 024997           69 YF-WP--HFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAV--YQRMSAYISLN---------------TMGVSR  128 (259)
Q Consensus        69 y~-~~--~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~--~~~~~~~~~~~---------------~~~~~~  128 (259)
                      |- +.  ....+...  .++.+.||||..+++|.|.||++++++.+  ++.+.......               ....+.
T Consensus       162 ~~~g~~~~~~~~~~~--~~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  239 (388)
T 1b9h_A          162 HAHGARWQGKRVGEL--DSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNE  239 (388)
T ss_dssp             TCTTCEETTEEGGGS--SSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBH
T ss_pred             hhcCCccCCeecccc--cceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCH
Confidence            92 11  11112111  26889999977766778999999985336  56665432210               011333


Q ss_pred             HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---
Q 024997          129 ECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---  205 (259)
Q Consensus       129 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  205 (259)
                      +..+++   ..      ..+++++.+++++++++.+.+.|++++++.+.  .+     -....+.+++++|+.++..   
T Consensus       240 ~~~a~~---~~------~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~  303 (388)
T 1b9h_A          240 FSASVL---RA------QLARLDEQIAVRDERWTLLSRLLGAIDGVVPQ--GG-----DVRADRNSHYMAMFRIPGLTEE  303 (388)
T ss_dssp             HHHHHH---HH------HHTTHHHHHHHHHHHHHHHHHHHHTSTTCEEC--CC-----CTTCCBCCCSEEEEECTTCCHH
T ss_pred             HHHHHH---HH------HHHHHHHHHHHHHHHHHHHHHHhccCCCcccc--CC-----CcCCCccceEEEEEEeCCcCcc
Confidence            322222   22      12356677888889999999999876542211  00     0000135578999999763   


Q ss_pred             chHHHHHHHHHcCeeeecCCcccC----------------------------CCCeEEEEeec---ChhhHHHHHHHHHH
Q 024997          206 EDKDCYGILKAAKIIGREGKKFRA----------------------------EARFVRLSLLK---SQDDFDLLLHRLDE  254 (259)
Q Consensus       206 ~~~~~~~ll~~~gi~~~~g~~f~~----------------------------~~~~~Ris~~~---~~~~~~~~~~~l~~  254 (259)
                      +.+.+.+.|.++||.++++..-..                            ..+.+||++..   ++++++.+++.|++
T Consensus       304 ~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~  383 (388)
T 1b9h_A          304 RRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIAD  383 (388)
T ss_dssp             HHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHH
Confidence            344455566678999988642100                            01358999864   68899999999999


Q ss_pred             Hhhh
Q 024997          255 LISK  258 (259)
Q Consensus       255 ~l~~  258 (259)
                      ++++
T Consensus       384 ~~~~  387 (388)
T 1b9h_A          384 AVAR  387 (388)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            8764

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.84  E-value=1.5e-20  Score=165.72  Aligned_cols=204  Identities=13%  Similarity=0.032  Sum_probs=134.1

Q ss_pred             CCCceEEEEcCCCCCChhhH----------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEeccccccCCCcc
Q 024997           33 SDTHLVEFVTAPNNPDGQMN----------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFTISKLTGHAGS   99 (259)
Q Consensus        33 ~~~~~~i~i~~p~NPtG~~~----------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~   99 (259)
                      .++...+++++|.|++|.+.          .++|+++|+++|+||+|  |+....... ...+....+.||||.++ .|+
T Consensus       224 ~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~-~G~  302 (451)
T 3oks_A          224 GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIA-GGL  302 (451)
T ss_dssp             CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGG-TTS
T ss_pred             CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhh-CCc
Confidence            44555568888887776443          28899999999999999  422111111 11111122349999998 599


Q ss_pred             eEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q 024997          100 RFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEI  179 (259)
Q Consensus       100 R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  179 (259)
                      |+||++++ +++++.+.......+++.+++.|+++.++++...+   +++    .++++++.+.+.+.|+++..    .+
T Consensus       303 ~iG~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~----~~~~~~~~~~l~~~L~~~~~----~~  370 (451)
T 3oks_A          303 PLSAVTGR-AEIMDSPHVSGLGGTYGGNPIACAAALATIETIES---EGL----VARAQQIEKIMKDRLGRLQA----ED  370 (451)
T ss_dssp             SCEEEEEE-HHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHH---TTH----HHHHHHHHHHHHHHHHHHHH----HC
T ss_pred             ceEEEEEC-HHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhh---hhH----HHHHHHHHHHHHHHHHHHHh----hC
Confidence            99999999 79999887666667889999999999999885311   233    44555555555555554310    00


Q ss_pred             cccccccceeeCCCCCeeEEEecCC-----C---chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHH
Q 024997          180 APQYCTYFKKIRPPSPAYAWVKCER-----E---EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLL  249 (259)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~  249 (259)
                      +     .+....+ .|.++|+.+..     .   ....+...+.++||.++|+..|+   +++|+++..  +++++++++
T Consensus       371 ~-----~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~---~~iRi~~~~~~t~e~i~~~l  441 (451)
T 3oks_A          371 D-----RIGDVRG-RGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYG---NVVRFLPPLSIGDDLLNEGL  441 (451)
T ss_dssp             T-----TEEEEEE-ETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTTS---CEEEECCCTTCCHHHHHHHH
T ss_pred             C-----CeEEEEE-eeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCCC---CEEEEECCCCCCHHHHHHHH
Confidence            0     0222233 35566776632     1   12334455557899999975543   689998653  899999999


Q ss_pred             HHHHHHhhh
Q 024997          250 HRLDELISK  258 (259)
Q Consensus       250 ~~l~~~l~~  258 (259)
                      ++|++++++
T Consensus       442 ~~l~~~l~~  450 (451)
T 3oks_A          442 DVLEEVLRG  450 (451)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999999875

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.83  E-value=1.6e-20  Score=164.57  Aligned_cols=210  Identities=11%  Similarity=0.051  Sum_probs=135.0

Q ss_pred             ChhhhcccCC---CCceEEEEcCCCC-CChhhH---------HHhhcCCCcEEEeeccccC-CCCCCCC-CCCCCeEEEe
Q 024997           24 EANLWGNASS---DTHLVEFVTAPNN-PDGQMN---------KAVLKGPYAKSIYDHAYFW-PHFAPIP-APADEELMIF   88 (259)
Q Consensus        24 d~~~l~~~~~---~~~~~i~i~~p~N-PtG~~~---------~~la~~~~~~vi~De~y~~-~~~~~~~-~~~~~~i~~~   88 (259)
                      |+++|++.+.   +++++ ++++|+| ++|.+.         .++|+++|+++|+||+|-+ ....... ...+....+.
T Consensus       188 d~~~le~~l~~~~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~di~  266 (434)
T 3l44_A          188 NVETLKEALDKWGHEVAA-ILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPDLT  266 (434)
T ss_dssp             CHHHHHHHHHHHGGGEEE-EEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCSEE
T ss_pred             cHHHHHHHHHhCCCCEEE-EEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCCee
Confidence            7788888874   34555 5566655 555443         2899999999999999921 1111110 0011111256


Q ss_pred             ccccccCCCcceEEEEEecCHHHHHHHHHh---hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 024997           89 TISKLTGHAGSRFGWAVIKDEAVYQRMSAY---ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLS  165 (259)
Q Consensus        89 S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (259)
                      |+||.++ +|+|+||++++ +++++.+...   ....+++.+++.|.++.++++..   ..++    ..++++++.+.+.
T Consensus       267 t~sK~~~-~G~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~---~~~~----~~~~~~~~~~~l~  337 (434)
T 3l44_A          267 ALGKVIG-GGLPIGAYGGK-KEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVL---QQEG----LYEKLDELGATLE  337 (434)
T ss_dssp             EEEGGGG-TTSSCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHH---TSTT----HHHHHHHHHHHHH
T ss_pred             ehhhhhc-CCcCeeeEEEc-HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHH---Hccc----HHHHHHHHHHHHH
Confidence            8999998 89999999998 7999887652   23456888999999999988853   1223    3555666666666


Q ss_pred             HHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--------------chHHHHHHHHHcCeeeecCCcccCCC
Q 024997          166 KIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--------------EDKDCYGILKAAKIIGREGKKFRAEA  231 (259)
Q Consensus       166 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ll~~~gi~~~~g~~f~~~~  231 (259)
                      +.|+++..    .++     ...... ..|.++++.+...              ..+.+.+.|.++||.++|+.     .
T Consensus       338 ~~L~~~~~----~~~-----~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~  402 (434)
T 3l44_A          338 KGILEQAA----KHN-----IDITLN-RLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSK-----Y  402 (434)
T ss_dssp             HHHHHHHH----HTT-----CCEEEE-EETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSST-----T
T ss_pred             HHHHHHHH----hCC-----CCEEEE-eeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecC-----C
Confidence            66655320    000     011222 3345556655321              11334455557899999853     3


Q ss_pred             CeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          232 RFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       232 ~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +.+|+++..+++++++++++|++++++
T Consensus       403 ~~~rl~~~~t~e~i~~~l~~l~~~l~~  429 (434)
T 3l44_A          403 EAWFLTTEHTKEDIEYTIEAVGRAFAA  429 (434)
T ss_dssp             CCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEecccCHHHHHHHHHHHHHHHHH
Confidence            578998777999999999999998763

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.83  E-value=2.7e-19  Score=154.98  Aligned_cols=215  Identities=11%  Similarity=0.021  Sum_probs=149.9

Q ss_pred             ccccChhhhcccCCC-CceEEEEcCCCC-CChhhH---HHhhcCCCcEEEeecccc----CCCCCCCCCCCCCeEEEecc
Q 024997           20 KFEGEANLWGNASSD-THLVEFVTAPNN-PDGQMN---KAVLKGPYAKSIYDHAYF----WPHFAPIPAPADEELMIFTI   90 (259)
Q Consensus        20 ~~~~d~~~l~~~~~~-~~~~i~i~~p~N-PtG~~~---~~la~~~~~~vi~De~y~----~~~~~~~~~~~~~~i~~~S~   90 (259)
                      .+.+|+++|++.+++ +++++++ +|+| |.-.-+   .++|+++|+++|+||+|.    ....... ......++++|+
T Consensus       147 ~~~~d~~~l~~~i~~~~~~~v~~-~~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~-~~~~~di~~~s~  224 (405)
T 2vi8_A          147 THVIDYDDVREKARLHRPKLIVA-AAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPN-PVPYAHFVTTTT  224 (405)
T ss_dssp             TCSBCHHHHHHHHHHHCCSEEEE-CCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC-STTTCSEEEEES
T ss_pred             cCCcCHHHHHHHHHhcCCeEEEE-eCCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCC-ccccCCEEEEec
Confidence            356888999988865 7788666 5554 322112   388999999999999992    1111111 111345899999


Q ss_pred             ccccC-CCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHH-HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 024997           91 SKLTG-HAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRA-FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKII  168 (259)
Q Consensus        91 SK~~g-~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (259)
                      ||.++ ..|   ||++++ +++++.+.........+.+.+.|.++ .++++..    ...++++.+++++++++.+.+.|
T Consensus       225 sK~~~g~~g---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~----~~~~~~~~~~~~~~~~~~l~~~L  296 (405)
T 2vi8_A          225 HKTLRGPRG---GMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEA----LQDDFKAYAKRVVDNAKRLASAL  296 (405)
T ss_dssp             SSTTCCCSC---EEEEEC-HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH----HSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCC---eEEEEc-HHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHH
Confidence            99996 677   999999 79999888765444444434444443 4566532    12467788999999999999999


Q ss_pred             HhcCCCccccccccccccceeeCC-CCCeeEEEecCCC--chHHHHHHHHHcCeeeecCCc----ccC-CCCeEEEEeec
Q 024997          169 SLSNRFSLQEIAPQYCTYFKKIRP-PSPAYAWVKCERE--EDKDCYGILKAAKIIGREGKK----FRA-EARFVRLSLLK  240 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~g~~----f~~-~~~~~Ris~~~  240 (259)
                      ++++              +....+ ..++++|++++..  +.+.+.+.|.++||.+++|..    ++. .++++|+|++.
T Consensus       297 ~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~  362 (405)
T 2vi8_A          297 QNEG--------------FTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAA  362 (405)
T ss_dssp             HHTT--------------CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHH
T ss_pred             HhCC--------------CeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeee
Confidence            8762              333333 4578889998742  455566677789999999862    332 35789999973


Q ss_pred             ------ChhhHHHHHHHHHHHhhh
Q 024997          241 ------SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       241 ------~~~~~~~~~~~l~~~l~~  258 (259)
                            +++++++++++|++++++
T Consensus       363 ~~~~~~~~~~i~~~~~~l~~~~~~  386 (405)
T 2vi8_A          363 VTTRGFGLEEMDEIAAIIGLVLKN  386 (405)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred             eeecCCCHHHHHHHHHHHHHHHhc
Confidence                  799999999999998753

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.83  E-value=1e-20  Score=165.09  Aligned_cols=196  Identities=12%  Similarity=0.056  Sum_probs=134.9

Q ss_pred             Chhhhc-ccCC-----CCceEEEEcCCC-CCChhh-H--------HHhhcCCCcEEEeeccc--cCC--CCCCCC--CCC
Q 024997           24 EANLWG-NASS-----DTHLVEFVTAPN-NPDGQM-N--------KAVLKGPYAKSIYDHAY--FWP--HFAPIP--APA   81 (259)
Q Consensus        24 d~~~l~-~~~~-----~~~~~i~i~~p~-NPtG~~-~--------~~la~~~~~~vi~De~y--~~~--~~~~~~--~~~   81 (259)
                      |+++|+ +.++     +++++ ++++|+ ||||.+ +        .++|+++|+++|+||+|  |..  ....+.  +..
T Consensus       195 ~~~~l~~~~i~~~~~~~~~~~-vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~  273 (419)
T 2eo5_A          195 VIEFIEDYIFVNLVPPEEVAG-IFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTV  273 (419)
T ss_dssp             HHHHHHHTHHHHTCCGGGEEE-EEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred             HHHHHHHHHHhhccCCCCEEE-EEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCC
Confidence            567888 7774     34455 667776 578963 3        28899999999999999  421  111111  222


Q ss_pred             CCeEEEeccccccCCCc-ceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 024997           82 DEELMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKR  160 (259)
Q Consensus        82 ~~~i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  160 (259)
                      +.   +.||||.++ .| +|+||++++ ++++ .+ ......+++.+++.|.++.++++..         .+.+++++++
T Consensus       274 ~d---~~t~sK~~~-~G~~riG~~~~~-~~~~-~~-~~~~~~t~~~n~~~~~aa~aal~~~---------~~~~~~~~~~  337 (419)
T 2eo5_A          274 PD---VITLAKALG-GGIMPIGATIFR-KDLD-FK-PGMHSNTFGGNALACAIGSKVIDIV---------KDLLPHVNEI  337 (419)
T ss_dssp             CS---EEEECGGGG-TTTSCCEEEEEE-GGGC-CC-------CCCCCHHHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred             CC---EEEeccccc-CCccceEEEEEc-hHhh-cC-CcccCCCCCCCHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence            22   338999999 59 999999999 5877 66 3234456888999999999999842         2267888889


Q ss_pred             HHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecC-CC-chHHHHHHHHHcCeeeecCCcccCCCCeEEEEe
Q 024997          161 WENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCE-RE-EDKDCYGILKAAKIIGREGKKFRAEARFVRLSL  238 (259)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~  238 (259)
                      ++.+.+.|+++               +....+ .|.++|+++. .. ..+ +.+.|.++||.++|+.     .+++||++
T Consensus       338 ~~~l~~~L~~~---------------~~~~~~-~g~~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~~~-----~~~lRis~  395 (419)
T 2eo5_A          338 GKIFAEELQGL---------------ADDVRG-IGLAWGLEYNEKKVRDR-IIGESFKRGLLLLPAG-----RSAIRVIP  395 (419)
T ss_dssp             HHHHHHHHTTS---------------SSEEEE-ETTEEEEECSCHHHHHH-HHHHHHHTTEECEEET-----TTEEEECC
T ss_pred             HHHHHHHHHHh---------------hhheEe-eeEEEEEEEecCccHHH-HHHHHHHCCCEEecCC-----CCEEEEEC
Confidence            99998888753               011223 3567788884 21 133 4444457899999953     57999987


Q ss_pred             e--cChhhHHHHHHHHHHHhhh
Q 024997          239 L--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       239 ~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      +  .+++++++++++|++++++
T Consensus       396 ~~~~t~e~i~~~l~~l~~~l~~  417 (419)
T 2eo5_A          396 PLVISEEEAKQGLDILKKVIKV  417 (419)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHh
Confidence            5  4899999999999998764

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.82  E-value=8.6e-20  Score=161.15  Aligned_cols=205  Identities=14%  Similarity=0.092  Sum_probs=131.5

Q ss_pred             hhhhcccCC----CCceEEEEcCCCCC-ChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCe
Q 024997           25 ANLWGNASS----DTHLVEFVTAPNNP-DGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEE   84 (259)
Q Consensus        25 ~~~l~~~~~----~~~~~i~i~~p~NP-tG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~   84 (259)
                      +++|++.+.    +++++ ++++|+|+ +|.+.         .++|+++|+++|+||+|  |+.......    +.... 
T Consensus       205 ~~~le~~i~~~~~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pd-  282 (459)
T 4a6r_A          205 ARWLEEKILEIGADKVAA-FVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPD-  282 (459)
T ss_dssp             HHHHHHHHHHHCGGGEEE-EEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCS-
T ss_pred             HHHHHHHHHHcCCCCEEE-EEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCC-
Confidence            567777774    34455 66666554 44433         38999999999999999  422111111    22222 


Q ss_pred             EEEeccccccCCCcceEEEEEecCHHHHHHHH---HhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH-HH
Q 024997           85 LMIFTISKLTGHAGSRFGWAVIKDEAVYQRMS---AYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMK-KR  160 (259)
Q Consensus        85 i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~  160 (259)
                        +.||||.++..|+|+||++++ +++++.+.   ......+++.+++.|+++.++|+...   .+++    .++++ ++
T Consensus       283 --i~t~sK~l~gg~~~lg~v~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~~~~----~~~~~~~~  352 (459)
T 4a6r_A          283 --LFTAAKGLSSGYLPIGAVFVG-KRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALR---DEGI----VQRVKDDI  352 (459)
T ss_dssp             --EEEECGGGGTTSSCCEEEEEC-HHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHH---HTCH----HHHHHHTH
T ss_pred             --eeehhhhhcCCCCCccceeeC-HHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHh---cchH----HHHHHHHH
Confidence              447899997555999999999 79999987   34445568899999999999998531   1233    44455 55


Q ss_pred             HHHHHHHH-HhcCCCccccccccccccceeeCCCCCeeEEEecCCC-c-----------hHHHHHHHHHcCeeeecCCcc
Q 024997          161 WENLSKII-SLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-E-----------DKDCYGILKAAKIIGREGKKF  227 (259)
Q Consensus       161 ~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~ll~~~gi~~~~g~~f  227 (259)
                      .+.+.+.| +.+....          .+....+. |.++++.+... .           ...+.+.+.++||.++|+   
T Consensus       353 ~~~~~~~l~~~l~~~~----------~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---  418 (459)
T 4a6r_A          353 GPYMQKRWRETFSRFE----------HVDDVRGV-GMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRAC---  418 (459)
T ss_dssp             HHHHHHHHHHHHTTCT----------TEEEEEEE-TTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEE---
T ss_pred             HHHHHHHHHHHHhcCC----------CeEEEEEE-EEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecC---
Confidence            55555555 3332110          13333444 44555555321 0           233444455679999985   


Q ss_pred             cCCCCeEEEEe--ecChhhHHHHHHHHHHHhhh
Q 024997          228 RAEARFVRLSL--LKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       228 ~~~~~~~Ris~--~~~~~~~~~~~~~l~~~l~~  258 (259)
                        + +++||++  ..+++++++++++|++++++
T Consensus       419 --g-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  448 (459)
T 4a6r_A          419 --G-DHIVSAPPLVMTRAEVDEMLAVAERCLEE  448 (459)
T ss_dssp             --T-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             --C-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence              2 7999995  45999999999999988753

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.82  E-value=9.4e-20  Score=160.05  Aligned_cols=206  Identities=11%  Similarity=0.039  Sum_probs=143.1

Q ss_pred             cChhhhcccC-CCCceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeE
Q 024997           23 GEANLWGNAS-SDTHLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEEL   85 (259)
Q Consensus        23 ~d~~~l~~~~-~~~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i   85 (259)
                      .|+++|++.+ ++++++ ++++| +|++|.+.         .++|+++|+++|+||+|  |+.....+.    +... .+
T Consensus       210 ~d~~~le~~l~~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~-Di  287 (439)
T 2oat_A          210 NDLPALERALQDPNVAA-FMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRP-DI  287 (439)
T ss_dssp             SCHHHHHHHTTSTTEEE-EEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCC-SE
T ss_pred             CCHHHHHHHhCCCCEEE-EEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCC-cE
Confidence            4788899988 466777 44556 46789643         38999999999999999  322111111    1112 22


Q ss_pred             EEeccccccCCCc-ceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 024997           86 MIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENL  164 (259)
Q Consensus        86 ~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (259)
                        .|+||.++ .| +|+||++++ +++++.+.......+++.+++.+.++.+.++...+       +...++++++.+.+
T Consensus       288 --~t~sK~l~-~G~~~~G~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~-------~~~~~~~~~~~~~l  356 (439)
T 2oat_A          288 --VLLGKALS-GGLYPVSAVLCD-DDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEE-------ENLAENADKLGIIL  356 (439)
T ss_dssp             --EEECGGGG-TTSSCCEEEEEC-HHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH-------TTHHHHHHHHHHHH
T ss_pred             --EEeccccc-CCCCCeEEEEEC-HHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHH
Confidence              39999998 69 999999999 69888776544455678899999988888875311       13467788888888


Q ss_pred             HHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---chHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--
Q 024997          165 SKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--  239 (259)
Q Consensus       165 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--  239 (259)
                      .+.|++++ +.          .+...+ ..|.++|+.++..   +...+...|.++||.+.|+     +++++|+++.  
T Consensus       357 ~~~L~~l~-~~----------~~~~~~-~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~-----~~~~iRi~~~~~  419 (439)
T 2oat_A          357 RNELMKLP-SD----------VVTAVR-GKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPT-----HGDIIRFAPPLV  419 (439)
T ss_dssp             HHHHTTSC-TT----------TEEEEE-EETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBS-----SSSEEEECCCTT
T ss_pred             HHHHHHhc-CC----------CcEEEE-eeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecC-----CCCEEEEECccC
Confidence            88887652 11          011222 3456778887643   2334444455689999983     3589999875  


Q ss_pred             cChhhHHHHHHHHHHHhhh
Q 024997          240 KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       240 ~~~~~~~~~~~~l~~~l~~  258 (259)
                      .+++++++++++|++++++
T Consensus       420 ~t~e~i~~~l~~l~~~l~~  438 (439)
T 2oat_A          420 IKEDELRESIEIINKTILS  438 (439)
T ss_dssp             CCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            4999999999999998864

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.82  E-value=1.9e-20  Score=163.72  Aligned_cols=219  Identities=12%  Similarity=0.044  Sum_probs=142.4

Q ss_pred             cccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCC----------cEEEeeccccCCCCCCCC-CCCCCe
Q 024997           21 FEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPY----------AKSIYDHAYFWPHFAPIP-APADEE   84 (259)
Q Consensus        21 ~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~----------~~vi~De~y~~~~~~~~~-~~~~~~   84 (259)
                      +.+|+++|++.++++++++++++|+||||.++     .++|+++|          +++|+|++|.... ..+. ...+..
T Consensus       161 ~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~-~~~~~~~~~~d  239 (432)
T 3a9z_A          161 GQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGK-RRVDVEDLGVD  239 (432)
T ss_dssp             SSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT-SCCCHHHHCCS
T ss_pred             CCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCC-cccChhhcCCC
Confidence            35788999999988899999999999999998     38899998          9999999993111 1111 111245


Q ss_pred             EEEeccccccCCCcceEEEEEecCHHH-HHHHHHh-------hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Q 024997           85 LMIFTISKLTGHAGSRFGWAVIKDEAV-YQRMSAY-------ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNT  156 (259)
Q Consensus        85 i~~~S~SK~~g~~G~R~G~i~~~~~~~-~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  156 (259)
                      +++.|+||.+|   .|+||+++++ ++ ...+...       .......++.+.+.++.++++..     ++++++.+++
T Consensus       240 ~~~~s~~K~~g---~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~-----~~~~~~~~~~  310 (432)
T 3a9z_A          240 FLTIVGHKFYG---PRIGALYVRG-VGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLV-----SENCETYEAH  310 (432)
T ss_dssp             EEEEEGGGTTC---CSCEEEEETT-BTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred             EEEEehhHhcC---CcceEEEEcc-ccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHH-----HhhHHHHHHH
Confidence            67999999875   5699999984 54 2222211       11122446677777776777642     2356778889


Q ss_pred             HHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHcCeeeecCCcccC-----
Q 024997          157 MKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAKIIGREGKKFRA-----  229 (259)
Q Consensus       157 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~g~~f~~-----  229 (259)
                      ++++++.+.+.|+++.++.+....+..      -....+..+++.+...  +.+.+...+  .++.+.+|..+..     
T Consensus       311 ~~~~~~~l~~~L~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~G~~~~~~~~~~  382 (432)
T 3a9z_A          311 MRDIRDYLEERLEAEFGKRIHLNSRFP------GVERLPNTCNFSIQGSQLRGYMVLAQC--QTLLASVGASCHSDHEDR  382 (432)
T ss_dssp             HHHHHHHHHHHHHHHHGGGEEESSCCT------TCCBCTTEEEEEECSTTCCHHHHHHHC--SSEECBSSCGGGGGGTTS
T ss_pred             HHHHHHHHHHHHHhccCCcEEEeCCCC------cccCCCCEEEEEeCCCCCcHHHHHHHh--cCeEEeccccccCCCCCC
Confidence            999999999999875432211000000      0012233444555432  233333323  3777777754432     


Q ss_pred             --------------CCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          230 --------------EARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       230 --------------~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                                    ..+++|||++.  +++++++++++|+++++
T Consensus       383 ~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~  426 (432)
T 3a9z_A          383 PSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVN  426 (432)
T ss_dssp             CCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence                          13799999976  89999999999998875

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.82  E-value=5.9e-20  Score=161.05  Aligned_cols=208  Identities=11%  Similarity=0.076  Sum_probs=143.2

Q ss_pred             cChhhhcccC-CCCceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeE
Q 024997           23 GEANLWGNAS-SDTHLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEEL   85 (259)
Q Consensus        23 ~d~~~l~~~~-~~~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i   85 (259)
                      .|+++|++.+ ++++++ ++++| +|++|.+.         .++|+++|+++|+||+|  |+.......    +... . 
T Consensus       199 ~d~~~le~~l~~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~-d-  275 (433)
T 1z7d_A          199 DDLEALEEELKDPNVCA-FIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKP-D-  275 (433)
T ss_dssp             TCHHHHHHHHTSTTEEE-EEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCC-S-
T ss_pred             CCHHHHHHHhCCCCEEE-EEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCC-C-
Confidence            4788899888 567777 45555 56789753         38999999999999999  322111111    1112 2 


Q ss_pred             EEeccccccCCCc-ceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 024997           86 MIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENL  164 (259)
Q Consensus        86 ~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (259)
                       +.|+||.+| +| +|+||++++ +++++.+.......+++.+++.++++.+.++...+       ++..++++++.+.+
T Consensus       276 -i~t~sK~l~-~G~~~~G~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~-------~~~~~~~~~~~~~l  345 (433)
T 1z7d_A          276 -VILLGKALS-GGHYPISAVLAN-DDIMLVIKPGEHGSTYGGNPLAASICVEALNVLIN-------EKLCENAEKLGGPF  345 (433)
T ss_dssp             -EEEECGGGG-TTSSCCEEEEEC-HHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH-------TTHHHHHHHHHHHH
T ss_pred             -EEEECcccc-CCCCCeEEEEEC-HHHHhhhccccccccCCCCHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHH
Confidence             339999999 89 999999999 69888776544455678899999988888875311       12466777888888


Q ss_pred             HHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--c
Q 024997          165 SKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--K  240 (259)
Q Consensus       165 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~  240 (259)
                      .+.|+++..    .++     .+.... ..|.++|+.++..  +...+.+.|.++||.++|+     +.+++|++++  .
T Consensus       346 ~~~L~~l~~----~~~-----~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~-----~~~~iRi~~~~~~  410 (433)
T 1z7d_A          346 LENLKRELK----DSK-----IVRDVR-GKGLLCAIEFKNELVNVLDICLKLKENGLITRDV-----HDKTIRLTPPLCI  410 (433)
T ss_dssp             HHHHHHHHT----TCT-----TEEEEE-EETTEEEEEECTTTCCHHHHHHHHHHTTEECCEE-----TTTEEEECCCTTC
T ss_pred             HHHHHHHHH----hCC-----CeEEEE-eeeeEEEEEEccChhHHHHHHHHHHHCCeEEecC-----CCCEEEEECCcCC
Confidence            888876520    011     012222 3466778887653  2334444455689999985     3589999875  3


Q ss_pred             ChhhHHHHHHHHHHHhhh
Q 024997          241 SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       241 ~~~~~~~~~~~l~~~l~~  258 (259)
                      +++++++++++|++++++
T Consensus       411 t~e~i~~~l~~l~~~l~~  428 (433)
T 1z7d_A          411 TKEQLDECTEIIVKTVKF  428 (433)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999999988753

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.82  E-value=1.3e-18  Score=151.28  Aligned_cols=215  Identities=12%  Similarity=0.041  Sum_probs=151.3

Q ss_pred             cccChhhhcccCC-CCceEEEEcCCCCCChhhH---HHhhcCCCcEEEeecccc-----CCC-CCCCCCCCCCeEEEecc
Q 024997           21 FEGEANLWGNASS-DTHLVEFVTAPNNPDGQMN---KAVLKGPYAKSIYDHAYF-----WPH-FAPIPAPADEELMIFTI   90 (259)
Q Consensus        21 ~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~---~~la~~~~~~vi~De~y~-----~~~-~~~~~~~~~~~i~~~S~   90 (259)
                      +.+|+++|++.++ +++++|++++|+|++-.-+   .++|+++|+++|+||+++     ... ...+   ...+++++|+
T Consensus       149 ~~~d~~~l~~~i~~~~~~~v~~~~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~---~~~di~~~s~  225 (417)
T 3n0l_A          149 GRIDYEKVREIAKKEKPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPF---PYAHVVSSTT  225 (417)
T ss_dssp             SSCCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCT---TTCSEEEEES
T ss_pred             CCcCHHHHHHHHHhcCCeEEEECCcccCccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCcc---ccceEEEeeC
Confidence            5688999999886 6889988888887433223   389999999999999972     211 1111   2457999999


Q ss_pred             ccccCCCcceEEEEEecCHHHHHHHHHhhhhhcC-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHH
Q 024997           91 SKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTM-GVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIIS  169 (259)
Q Consensus        91 SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  169 (259)
                      ||.+  +|+|.||++++++++.+.+......... +++...+.++..++...    .+..+.+.++++.++++.+.+.|+
T Consensus       226 sK~l--~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~----~~~~~~~~~~~~~~~~~~l~~~L~  299 (417)
T 3n0l_A          226 HKTL--RGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFN----LSDEWKVYAKQVRTNAQVLANVLM  299 (417)
T ss_dssp             STTT--CSCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH----TSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccc--CCCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9988  6888999999866888888776554333 33444444444455431    334567788889999999999998


Q ss_pred             hcCCCccccccccccccceeeC-CCCCeeEEEecCCC--chHHHHHHHHHcCeeeecCCcccC-----CCCeEEEEeec-
Q 024997          170 LSNRFSLQEIAPQYCTYFKKIR-PPSPAYAWVKCERE--EDKDCYGILKAAKIIGREGKKFRA-----EARFVRLSLLK-  240 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~g~~f~~-----~~~~~Ris~~~-  240 (259)
                      +.+              +.... +..+.++|+++...  +.+.+.++|+++||.++++..+..     ..+.+|+++.. 
T Consensus       300 ~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~  365 (417)
T 3n0l_A          300 DRK--------------FKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPAL  365 (417)
T ss_dssp             HTT--------------CEEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHH
T ss_pred             hCC--------------ceeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHH
Confidence            733              22222 24456788887542  567788888889999987643321     24679999742 


Q ss_pred             -----ChhhHHHHHHHHHHHhhh
Q 024997          241 -----SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       241 -----~~~~~~~~~~~l~~~l~~  258 (259)
                           +++++++++++|++++++
T Consensus       366 ~~~~~~~~~i~~~~~~l~~~l~~  388 (417)
T 3n0l_A          366 TARGFKEKEMEIVSNYIADILDD  388 (417)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             hhCCCCHHHHHHHHHHHHHHHhc
Confidence                 579999999999998763

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.82  E-value=6.3e-19  Score=153.26  Aligned_cols=214  Identities=11%  Similarity=0.057  Sum_probs=148.0

Q ss_pred             cccChhhhcccCCC-CceEEEEcCCCCCChhhH---HHhhcCCCcEEEeecccc-----CCCCCCCCCCCCCeEEEeccc
Q 024997           21 FEGEANLWGNASSD-THLVEFVTAPNNPDGQMN---KAVLKGPYAKSIYDHAYF-----WPHFAPIPAPADEELMIFTIS   91 (259)
Q Consensus        21 ~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~---~~la~~~~~~vi~De~y~-----~~~~~~~~~~~~~~i~~~S~S   91 (259)
                      +.+|+++|++.+++ +++++++++|+||+-.-+   .++|+++|+++|+||+|+     ......  .....+++++|+|
T Consensus       154 ~~~d~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~--~~~~~di~~~s~s  231 (420)
T 3gbx_A          154 GKIDYDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPN--PVPHAHVVTTTTH  231 (420)
T ss_dssp             CSCCHHHHHHHHHHHCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCC--STTTSSEEEEESS
T ss_pred             CCcCHHHHHHHHHhcCCeEEEEecCccCCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCc--ccccCCEEEeecc
Confidence            45889999998865 689989999999863333   388999999999999972     111111  1223569999999


Q ss_pred             cccCCCcceEEEEEecC--HHHHHHHHHhhhhhcC-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 024997           92 KLTGHAGSRFGWAVIKD--EAVYQRMSAYISLNTM-GVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKII  168 (259)
Q Consensus        92 K~~g~~G~R~G~i~~~~--~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (259)
                      |.++  |.+.||+++++  +++.+.+......... +++...+.++...+..    ..+.++++.++++.++++.+.+.|
T Consensus       232 K~~~--g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~----~~~~~~~~~~~~~~~~~~~l~~~L  305 (420)
T 3gbx_A          232 KTLA--GPRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKE----AMEPEFKVYQQQVAKNAKAMVEVF  305 (420)
T ss_dssp             GGGC--SCSCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHH----TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCC--CCCceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHH----HHhHhHHHHHHHHHHHHHHHHHHH
Confidence            9995  44459999983  2787777665443323 3344444444444443    234567788899999999999999


Q ss_pred             HhcCCCccccccccccccceeeC-CCCCeeEEEecCCC--chHHHHHHHHHcCeeeec-------CCcccCCCCeEEEEe
Q 024997          169 SLSNRFSLQEIAPQYCTYFKKIR-PPSPAYAWVKCERE--EDKDCYGILKAAKIIGRE-------GKKFRAEARFVRLSL  238 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~-------g~~f~~~~~~~Ris~  238 (259)
                      ++.+              +.... +..+.++|+.+...  +.+.+.++|+++||.+++       |..|+  +..+||++
T Consensus       306 ~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~--~~~iRi~~  369 (420)
T 3gbx_A          306 LNRG--------------YKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFV--TSGIRIGS  369 (420)
T ss_dssp             HHTT--------------CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTT--CSEEEEEC
T ss_pred             HhcC--------------CeeccCCCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCC--CcceEEec
Confidence            8743              22222 24677888887542  467777888889999998       33333  35699998


Q ss_pred             ec------ChhhHHHHHHHHHHHhhh
Q 024997          239 LK------SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       239 ~~------~~~~~~~~~~~l~~~l~~  258 (259)
                      ..      ++++++.+++.|++++++
T Consensus       370 ~~~~~~~~~~~~i~~~~~~l~~~l~~  395 (420)
T 3gbx_A          370 PAVTRRGFKEAEVKELAGWMCDVLDN  395 (420)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             chhcccCCCHHHHHHHHHHHHHHHhC
Confidence            53      468899999999988764

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.82  E-value=1.6e-19  Score=156.75  Aligned_cols=229  Identities=11%  Similarity=0.042  Sum_probs=149.1

Q ss_pred             ccCcccccc-cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCC-CCCCCCCCCCeEE
Q 024997           14 FESVDYKFE-GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPH-FAPIPAPADEELM   86 (259)
Q Consensus        14 ~g~~~~~~~-~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~-~~~~~~~~~~~i~   86 (259)
                      .|.++..+. .|+++|++.+++++++|++++|+||||.++     .++|+++|+++|+||+|-.+. ..++  ..+.+++
T Consensus       130 ~g~~~~~v~~~d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~--~~g~div  207 (400)
T 3nmy_A          130 AGLDFSFVDLTDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPL--SLGADLV  207 (400)
T ss_dssp             HCCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGG--GGTCSEE
T ss_pred             cCeEEEEECCCCHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh--hcCCcEE
Confidence            465553332 367889999998999999999999999997     389999999999999982000 0111  1246799


Q ss_pred             EeccccccCCCcceEEE--EEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 024997           87 IFTISKLTGHAGSRFGW--AVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENL  164 (259)
Q Consensus        87 ~~S~SK~~g~~G~R~G~--i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (259)
                      +.|+||.++.+|.++|.  ++..++++.+.+.......+.+.++...+++.+.++         .+..+.++..++...+
T Consensus       208 ~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~---------~l~~r~~~~~~~a~~l  278 (400)
T 3nmy_A          208 VHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLK---------TLPLRMRAHCENALAL  278 (400)
T ss_dssp             EEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHT---------THHHHHHHHHHHHHHH
T ss_pred             EecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHh---------HHHHHHHHHHHHHHHH
Confidence            99999999878877755  555447899999888777778888887776666665         3556678889999999


Q ss_pred             HHHHHhcCCCccccccccccc----cceeeCCCCCeeEEEecCCCchHHHHHHHHHc---CeeeecCCccc---------
Q 024997          165 SKIISLSNRFSLQEIAPQYCT----YFKKIRPPSPAYAWVKCEREEDKDCYGILKAA---KIIGREGKKFR---------  228 (259)
Q Consensus       165 ~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---gi~~~~g~~f~---------  228 (259)
                      .+.|++.+.+.....+.....    .++......|..+++.++.. .+....++++.   ++.+..|..+.         
T Consensus       279 ~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~-~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~  357 (400)
T 3nmy_A          279 AQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGG-FDAAKRFCEKTELFTLAESLGGVESLVNHPAVMT  357 (400)
T ss_dssp             HHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH-HHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTT
T ss_pred             HHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCc-HHHHHHHHHcCCcceEecCCCCCcceeeCccccc
Confidence            999988765432222210000    00000123466778888642 23344444433   44444443221         


Q ss_pred             -------------CCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          229 -------------AEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       229 -------------~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                                   ..++.+|+|++.  ++.+++++.|.+.|
T Consensus       358 ~~~~~~~~~~~~gi~~~liRlsvGl--e~~~dli~dl~~al  396 (400)
T 3nmy_A          358 HASIPVARREQLGISDALVRLSVGI--EDLGDLRGDLERAL  396 (400)
T ss_dssp             TTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred             cccCCHHHHHhcCCCcCeEEEEeCc--CCHHHHHHHHHHHH
Confidence                         135789999987  33334445555544

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.82  E-value=8.8e-20  Score=161.17  Aligned_cols=232  Identities=14%  Similarity=0.072  Sum_probs=146.9

Q ss_pred             CCcccchhhhhhccCccc----------------ccccChhhhcccCC----CCceEEEEcCCCCCC-hhhH--------
Q 024997            2 PFYPLYQEQTDYFESVDY----------------KFEGEANLWGNASS----DTHLVEFVTAPNNPD-GQMN--------   52 (259)
Q Consensus         2 P~y~~~~~~~~~~g~~~~----------------~~~~d~~~l~~~~~----~~~~~i~i~~p~NPt-G~~~--------   52 (259)
                      |.|+.+...+...|....                .+.+|+++|++.++    +++++|++++||||| |.++        
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i  209 (467)
T 1ax4_A          130 FHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEV  209 (467)
T ss_dssp             SCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHH
T ss_pred             cccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHH
Confidence            455665666666555431                23578899998885    368999999999999 7664        


Q ss_pred             HHhhcCCCcEEEeeccc-c-----------CCCCCCCCCC-----CCCeEEEeccccccCCC-cceEEEEEecCH-HHHH
Q 024997           53 KAVLKGPYAKSIYDHAY-F-----------WPHFAPIPAP-----ADEELMIFTISKLTGHA-GSRFGWAVIKDE-AVYQ  113 (259)
Q Consensus        53 ~~la~~~~~~vi~De~y-~-----------~~~~~~~~~~-----~~~~i~~~S~SK~~g~~-G~R~G~i~~~~~-~~~~  113 (259)
                      .++|+++|+++|+|+++ |           .....++...     ....+++.|+||.+|++ |   ||++.+++ ++++
T Consensus       210 ~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G---g~~~~~d~~~l~~  286 (467)
T 1ax4_A          210 YEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG---GLVAIRDNEEIFT  286 (467)
T ss_dssp             HHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC---EEEEESSCHHHHH
T ss_pred             HHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcc---eEEEeCCHHHHHH
Confidence            38999999999999975 2           1111111110     11235679999999876 5   77777755 7888


Q ss_pred             HHHHhhhhh----cCC-CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccce
Q 024997          114 RMSAYISLN----TMG-VSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFK  188 (259)
Q Consensus       114 ~~~~~~~~~----~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  188 (259)
                      .+.......    ..+ .+...+.++...++..    .+   .+..+...++++.+.+.|++. +             +.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~---~~~~~~~~~~~~~l~~~L~~~-~-------------~~  345 (467)
T 1ax4_A          287 LARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEG----TE---EEYLHYRIGQVKYLGDRLREA-G-------------IP  345 (467)
T ss_dssp             HHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHT----TC---HHHHHHHHHHHHHHHHHHHHT-T-------------CC
T ss_pred             HHHhhccccccccccCCccchHHHHHHHHHHHh----hh---hhHHHHHHHHHHHHHHHHHhC-C-------------CC
Confidence            776554321    122 2333333333345421    11   112333446677778888762 2             33


Q ss_pred             eeCCCCCeeEEEe-------cCCC--c-hHHHHHHHHHcCeeeec-CCcc-cC----------CCCeEEEEee---cChh
Q 024997          189 KIRPPSPAYAWVK-------CERE--E-DKDCYGILKAAKIIGRE-GKKF-RA----------EARFVRLSLL---KSQD  243 (259)
Q Consensus       189 ~~~~~~~~~~~~~-------~~~~--~-~~~~~~ll~~~gi~~~~-g~~f-~~----------~~~~~Ris~~---~~~~  243 (259)
                      ...+.+++++|++       ++..  + .++...+++++||.+.| |..+ +.          ..+++|||+.   .+.+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e  425 (467)
T 1ax4_A          346 IQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTND  425 (467)
T ss_dssp             BCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHH
T ss_pred             cccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHH
Confidence            4467789999998       4321  2 34455554889999999 6542 11          1379999997   3789


Q ss_pred             hHHHHHHHHHHHhh
Q 024997          244 DFDLLLHRLDELIS  257 (259)
Q Consensus       244 ~~~~~~~~l~~~l~  257 (259)
                      ++++++++|+++++
T Consensus       426 ~i~~~~~~l~~~~~  439 (467)
T 1ax4_A          426 HMDYIADALIGLKE  439 (467)
T ss_dssp             HHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998775

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.82  E-value=5.6e-19  Score=152.45  Aligned_cols=234  Identities=10%  Similarity=-0.010  Sum_probs=157.0

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~   68 (259)
                      +|+|+.+...++..|.++.       ++.+|+++|++.+++++++++++   ||||.+.     .++|+++|+++|+|++
T Consensus        86 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a  162 (393)
T 1mdo_A           86 SMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAA  162 (393)
T ss_dssp             SSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECT
T ss_pred             CCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCCCceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECc
Confidence            5889999888888887652       25588899999998888887765   4788876     3889999999999999


Q ss_pred             cc-C--CCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhc----------------------
Q 024997           69 YF-W--PHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNT----------------------  123 (259)
Q Consensus        69 y~-~--~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~----------------------  123 (259)
                      |. +  .....+ +.  .++++.|+||..+++|.|.||++++++++++.+........                      
T Consensus       163 ~~~g~~~~~~~~-~~--~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  239 (393)
T 1mdo_A          163 HATGTSYKGRHI-GA--RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPG  239 (393)
T ss_dssp             TCTTCEETTEET-TS--SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCC
T ss_pred             cccCCeECCeec-CC--CCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccC
Confidence            93 1  111111 11  78999999933333456899999975688888876543211                      


Q ss_pred             --CCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEe
Q 024997          124 --MGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVK  201 (259)
Q Consensus       124 --~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (259)
                        ...+++...++...++         .+++..++.+++++.+.+.|++++ +.+...++       ...+.++.++|+.
T Consensus       240 ~~~~~~~~~~a~~~~~l~---------~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~-------~~~~~~~~~~~v~  302 (393)
T 1mdo_A          240 YKYNLPDLNAAIALAQLQ---------KLDALNARRAAIAAQYHQAMADLP-FQPLSLPS-------WEHIHAWHLFIIR  302 (393)
T ss_dssp             CBCCCCHHHHHHHHHHHH---------THHHHHHHHHHHHHHHHHHHHTSS-CEECCCCS-------SCEECCCSCEEEE
T ss_pred             ccCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhcCC-cccccCCC-------CCCCceeEEEEEE
Confidence              1234554444444443         244556666677788888887654 22110000       0012355678888


Q ss_pred             cCC----CchHHHHHHHHHcCeeeecCCccc---------------C-----CCCeEEEEeec--ChhhHHHHHHHHHHH
Q 024997          202 CER----EEDKDCYGILKAAKIIGREGKKFR---------------A-----EARFVRLSLLK--SQDDFDLLLHRLDEL  255 (259)
Q Consensus       202 ~~~----~~~~~~~~ll~~~gi~~~~g~~f~---------------~-----~~~~~Ris~~~--~~~~~~~~~~~l~~~  255 (259)
                      ++.    .+.+.+.+.|.++||.+++|..+.               +     ..+.+|+++..  ++++++.+++.|+++
T Consensus       303 ~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~  382 (393)
T 1mdo_A          303 VDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQI  382 (393)
T ss_dssp             CCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             ecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            873    345556666667899999986441               0     13579999974  999999999999988


Q ss_pred             hh
Q 024997          256 IS  257 (259)
Q Consensus       256 l~  257 (259)
                      ++
T Consensus       383 ~~  384 (393)
T 1mdo_A          383 AG  384 (393)
T ss_dssp             HC
T ss_pred             Hh
Confidence            75

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.82  E-value=3.7e-20  Score=162.99  Aligned_cols=209  Identities=9%  Similarity=0.031  Sum_probs=136.2

Q ss_pred             ChhhhcccCC---CCceEEEEcCCC-CCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEE
Q 024997           24 EANLWGNASS---DTHLVEFVTAPN-NPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMI   87 (259)
Q Consensus        24 d~~~l~~~~~---~~~~~i~i~~p~-NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~   87 (259)
                      |+++|++.+.   +++++|+++.++ ||+|.+.         .++|+++|+++|+||+|  |+....... ...+....+
T Consensus       196 d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di  275 (448)
T 3dod_A          196 CLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDL  275 (448)
T ss_dssp             HHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE
T ss_pred             HHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCE
Confidence            3677888775   456665555555 8888654         38999999999999999  421111111 111111224


Q ss_pred             eccccccCCCc-ceEEEEEecCHHHHHHHHH-------hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 024997           88 FTISKLTGHAG-SRFGWAVIKDEAVYQRMSA-------YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKK  159 (259)
Q Consensus        88 ~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  159 (259)
                      .||||.++ .| +|+||++++ +++++.+..       .....+++.+++.|+++.++++...   .++    ..+++++
T Consensus       276 ~t~sK~l~-~G~~~ig~v~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~~~----~~~~~~~  346 (448)
T 3dod_A          276 MAAGKGIT-GGYLPIAVTFAT-EDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFE---SEN----IVEQVAE  346 (448)
T ss_dssp             EEECGGGG-TTSSCCEEEEEE-HHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHH---HTT----HHHHHHH
T ss_pred             EEeccccc-CCcCceEEEEEC-HHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHh---ccc----HHHHHHH
Confidence            58999998 59 599999999 799998876       4445678889999999999988531   123    3455555


Q ss_pred             HHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-c-----------hHHHHHHHHHcCeeeecCCcc
Q 024997          160 RWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-E-----------DKDCYGILKAAKIIGREGKKF  227 (259)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~ll~~~gi~~~~g~~f  227 (259)
                      +.+.+.+.|+++....          .+....+ .|.++|+.+... +           ...+...+.++||.++|+   
T Consensus       347 ~~~~~~~~l~~l~~~~----------~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---  412 (448)
T 3dod_A          347 KSKKLHFLLQDLHALP----------HVGDIRQ-LGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL---  412 (448)
T ss_dssp             HHHHHHHHHHHHTTST----------TEEEEEE-ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE---
T ss_pred             HHHHHHHHHHHHhcCC----------CeEEEEe-eeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEecc---
Confidence            5666666555422110          0222222 355667776542 1           133444455679999985   


Q ss_pred             cCCCCeEEEEe--ecChhhHHHHHHHHHHHhhh
Q 024997          228 RAEARFVRLSL--LKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       228 ~~~~~~~Ris~--~~~~~~~~~~~~~l~~~l~~  258 (259)
                        + +++||++  ..+++++++++++|++++++
T Consensus       413 --~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  442 (448)
T 3dod_A          413 --G-DVIAFLPPLASTAEELSEMVAIMKQAIHE  442 (448)
T ss_dssp             --T-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             --C-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence              2 7999965  44999999999999988753

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.82  E-value=4.8e-19  Score=154.92  Aligned_cols=242  Identities=10%  Similarity=0.025  Sum_probs=148.9

Q ss_pred             CCCcccchh----hhhhccCccccccc-ChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc
Q 024997            1 MPFYPLYQE----QTDYFESVDYKFEG-EANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF   70 (259)
Q Consensus         1 ~P~y~~~~~----~~~~~g~~~~~~~~-d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~   70 (259)
                      +|+|+.+..    .+...|.++..+.. |+++|++.+++++++|++++|+||||.++     .++|+++|+++|+|++|-
T Consensus       128 ~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~  207 (430)
T 3ri6_A          128 DRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMT  207 (430)
T ss_dssp             TTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTS
T ss_pred             CCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCc
Confidence            467776666    44556766543332 77889999999999999999999999997     389999999999999993


Q ss_pred             CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEe--cCH------------------HHHHHHHH-hhhhhcCCCCHH
Q 024997           71 WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVI--KDE------------------AVYQRMSA-YISLNTMGVSRE  129 (259)
Q Consensus        71 ~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~--~~~------------------~~~~~~~~-~~~~~~~~~~~~  129 (259)
                      .+.. .-+...+.++++.|+||.++.+|..+|.+++  .+.                  .+++..+. .........++.
T Consensus       208 ~~~~-~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~  286 (430)
T 3ri6_A          208 PPYL-LEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPH  286 (430)
T ss_dssp             CTTT-CCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHH
T ss_pred             cccc-CChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHH
Confidence            1111 1111234579999999999877655655554  211                  11233322 223344455665


Q ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc----cceeeCCCCCeeEEEecCCC
Q 024997          130 CQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCT----YFKKIRPPSPAYAWVKCERE  205 (259)
Q Consensus       130 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  205 (259)
                      ..+.+...++         .+..+.++..++...+.+.|++.+.+.....+....+    .++.....||+.+|+.++. 
T Consensus       287 ~a~l~l~~l~---------~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~-  356 (430)
T 3ri6_A          287 NAYLQSLGLE---------TMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELES-  356 (430)
T ss_dssp             HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS-
T ss_pred             HHHHHHhhhh---------hHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC-
Confidence            5544444444         4566677888999999999998776442222220000    0000002255588999973 


Q ss_pred             chHHHHHHHH---HcCeeeecCCccc----------------------CCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          206 EDKDCYGILK---AAKIIGREGKKFR----------------------AEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       206 ~~~~~~~ll~---~~gi~~~~g~~f~----------------------~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                       .+...++++   ..++.+.+|..+.                      ..++.+|||++.  |+.+++++.|++.|
T Consensus       357 -~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~--E~~~dl~~dl~~al  429 (430)
T 3ri6_A          357 -KEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI--EEIEDLKEDILQAL  429 (430)
T ss_dssp             -HHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHhh
Confidence             333444443   3456666665443                      236789999987  44445555555544

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.81  E-value=6.6e-19  Score=155.42  Aligned_cols=207  Identities=11%  Similarity=0.046  Sum_probs=144.5

Q ss_pred             cChhhhcccCC---CCceEEEEcC-CCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCC
Q 024997           23 GEANLWGNASS---DTHLVEFVTA-PNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADE   83 (259)
Q Consensus        23 ~d~~~l~~~~~---~~~~~i~i~~-p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~   83 (259)
                      .|+++|++.++   +++++++++. ++||+|.+.         .++|+++|+++|+||+|  |+.....+.    +..+.
T Consensus       218 ~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pd  297 (457)
T 3tfu_A          218 AYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPD  297 (457)
T ss_dssp             HHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS
T ss_pred             HHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCce
Confidence            36788888885   5678877777 789999875         28999999999999999  432221111    22222


Q ss_pred             eEEEeccccccCCCc-ceEEEEEecCHHHHHHHHHh-----hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 024997           84 ELMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAY-----ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTM  157 (259)
Q Consensus        84 ~i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  157 (259)
                      +   -||||.++ .| +|+||++++ +++++.+...     ....+++.+++.++++.+.++...   .++    ..+++
T Consensus       298 i---it~sK~l~-gG~~~lG~v~~~-~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~---~~~----~~~~~  365 (457)
T 3tfu_A          298 I---MCVGKALT-GGYLSLAATLCT-ADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLL---GQD----WRTRI  365 (457)
T ss_dssp             E---EEECGGGG-TTSSCCEEEEEE-HHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHH---TSC----HHHHH
T ss_pred             E---EEEChhhh-CCCcceEEEEEc-HHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHh---hhH----HHHHH
Confidence            2   29999987 46 799999999 7999988632     334567889999999999888531   122    36677


Q ss_pred             HHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCCCeEEE
Q 024997          158 KKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEARFVRL  236 (259)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ri  236 (259)
                      +++.+++.+.|+++...     +     .+...++. |.++++.+... +...+.+.|.++||.++|.      .+++||
T Consensus       366 ~~~~~~l~~~L~~l~~~-----~-----~v~~vr~~-G~~~~i~l~~~~~~~~~~~~l~~~Gv~v~~~------~~~lRi  428 (457)
T 3tfu_A          366 TELAAGLTAGLDTARAL-----P-----AVTDVRVC-GAIGVIECDRPVDLAVATPAALDRGVWLRPF------RNLVYA  428 (457)
T ss_dssp             HHHHHHHHHHHGGGGGS-----T-----TEEEEEEC-SSCEEEEESSCCCHHHHHHHHHHTTEECCCB------TTEEEE
T ss_pred             HHHHHHHHHHHHHHhcC-----C-----CeeeeecC-CeEEEEEECCcccHHHHHHHHHHCCeEEEec------CCEEEE
Confidence            77888888888765321     1     13333333 56677777653 3344444455679999972      268999


Q ss_pred             Eee--cChhhHHHHHHHHHHHhhh
Q 024997          237 SLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       237 s~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      ++.  .+++++++++++|++++++
T Consensus       429 ~p~~~~t~eei~~~l~~L~~~l~~  452 (457)
T 3tfu_A          429 MPPYICTPAEITQITSAMVEVARL  452 (457)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHH
Confidence            864  4999999999999998864

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.81  E-value=3.1e-20  Score=158.05  Aligned_cols=227  Identities=11%  Similarity=-0.026  Sum_probs=150.5

Q ss_pred             CCCcccchh--hhhhccCcc-----cccccChhhhcccCCCC-------ceEEEEcCCCCCChhhH--------HHhhcC
Q 024997            1 MPFYPLYQE--QTDYFESVD-----YKFEGEANLWGNASSDT-------HLVEFVTAPNNPDGQMN--------KAVLKG   58 (259)
Q Consensus         1 ~P~y~~~~~--~~~~~g~~~-----~~~~~d~~~l~~~~~~~-------~~~i~i~~p~NPtG~~~--------~~la~~   58 (259)
                      +|+|+.+..  .++..|.++     ..+.+|+++|++.+++.       ++++++++| ||||.++        .++|++
T Consensus        97 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~  175 (359)
T 1svv_A           97 QLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKE  175 (359)
T ss_dssp             TTSHHHHSSTTHHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHhcCCCeeEEEeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHH
Confidence            478888877  366667655     24567889999888543       889999999 7999985        288999


Q ss_pred             CCcEEEeeccc--cC-CCCCCCCCC-----CCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhc--CCCCH
Q 024997           59 PYAKSIYDHAY--FW-PHFAPIPAP-----ADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNT--MGVSR  128 (259)
Q Consensus        59 ~~~~vi~De~y--~~-~~~~~~~~~-----~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~--~~~~~  128 (259)
                      +|+++|+||+|  |. ... .....     ....++..|++|..+.  ..+|+++++ +++++.+........  ...+.
T Consensus       176 ~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~d~~~~s~~K~g~~--~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~  251 (359)
T 1svv_A          176 HGLYLFLDGARLASALSSP-VNDLTLADIARLTDMFYIGATKAGGM--FGEALIILN-DALKPNARHLIKQRGALMAKGW  251 (359)
T ss_dssp             HTCEEEEECTTHHHHHTST-TCCCCHHHHHHHCSEEEEECTTTTCS--SCEEEEECS-GGGCTTHHHHHHHTTCCCTTTH
T ss_pred             hCCEEEEEccchhhhhcCC-CcchhhhhhhhcCCEEEEecccCCCC--CceEEEEEc-ccHHHHHHHHHhcCCcccccch
Confidence            99999999998  31 111 11111     2346788899997543  458999988 588877766432111  12222


Q ss_pred             HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchH
Q 024997          129 ECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDK  208 (259)
Q Consensus       129 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (259)
                      .......++++      . ...++.+++++++++.+.+.| +..+             +....+.+++++|++++   .+
T Consensus       252 ~~~~~~~~~l~------~-~~~~~~~~~~~~~~~~l~~~L-~~~~-------------~~~~~~~~~~~~~~~~~---~~  307 (359)
T 1svv_A          252 LLGIQFEVLMK------D-NLFFELGAHSNKMAAILKAGL-EACG-------------IRLAWPSASNQLFPILE---NT  307 (359)
T ss_dssp             HHHHHHHHHTS------T-THHHHHHHHHHHHHHHHHHHH-HHTT-------------CCBSSCCSSSEECBEEE---HH
T ss_pred             hhHHHHHHHHh------h-hhHHHHHHHHHHHHHHHHHHh-ccCC-------------eEEccCCccceEEEEcC---HH
Confidence            22222333343      1 345677888999999999988 4443             33345677888888774   45


Q ss_pred             HHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          209 DCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       209 ~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      +...+++++||.+.+ .. ..+.+++|++++.  +++++++++++|++++++
T Consensus       308 ~~~~l~~~~gi~v~~-~~-~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  357 (359)
T 1svv_A          308 MIAELNNDFDMYTVE-PL-KDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS  357 (359)
T ss_dssp             HHHHHTTTEECEEEE-EE-TTTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHhcCEEEEe-cc-cCCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence            555555544999822 11 1245789998763  899999999999988753

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.81  E-value=1.9e-18  Score=150.91  Aligned_cols=228  Identities=11%  Similarity=0.004  Sum_probs=146.9

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~   68 (259)
                      +|+|+.+...++..|.++.       ++.+|+++|++.+++++++|+++   ||||...     .++|+++|+++|+|++
T Consensus        97 ~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~tG~~~~l~~i~~la~~~~~~li~Dea  173 (424)
T 2po3_A           97 SMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGV---HLWGRPCAADQLRKVADEHGLRLYFDAA  173 (424)
T ss_dssp             SSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEE---CGGGCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred             CCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEE---CCCCCcCCHHHHHHHHHHcCCEEEEECc
Confidence            5899999998888887652       45678899999998888987875   4899875     3899999999999999


Q ss_pred             cc-CC--CCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcC------------CCCHHHHHH
Q 024997           69 YF-WP--HFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTM------------GVSRECQLR  133 (259)
Q Consensus        69 y~-~~--~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~------------~~~~~~q~~  133 (259)
                      |. +-  ....+....  .++++||||..+++|+|+||++++++++++.+.........            ..+.+.   
T Consensus       174 ~~~g~~~~~~~~~~~~--di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~---  248 (424)
T 2po3_A          174 HALGCAVDGRPAGSLG--DAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAA---  248 (424)
T ss_dssp             TCTTCEETTEETTSSS--SEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHH---
T ss_pred             cccCCeECCeeccccc--CEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHH---
Confidence            92 11  111221112  39999999666667799999999856888888775542211            122332   


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeC-CCCC---eeE-EEecCC----
Q 024997          134 AFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIR-PPSP---AYA-WVKCER----  204 (259)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~-~~~~~~----  204 (259)
                      +...+..      ...+++..++.+++++.+.+.|+++++             +.... ++++   +++ ++.++.    
T Consensus       249 aa~~l~~------~~~~~~~~~~~~~~~~~l~~~L~~~~g-------------~~~~~~~~~~~~~~~~~~i~~~~~~~~  309 (424)
T 2po3_A          249 AAMGLTS------LDAFPEVIDRNRRNHAAYREHLADLPG-------------VLVADHDRHGLNNHQYVIVEIDEATTG  309 (424)
T ss_dssp             HHHHHHH------HHHHHHHHHHHHHHHHHHHHHTCSCTT-------------EEECCGGGGSCCCCCCEEEEECHHHHS
T ss_pred             HHHHHHH------HHHHHHHHHHHHHHHHHHHHHhccCCC-------------ccccCCCCCCccccEEEEEEECCccch
Confidence            2222221      123445566666666666666665433             22222 2222   233 366652    


Q ss_pred             CchHHHHHHHHHcCeeeecCCcccCC---------------CCe-------EEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          205 EEDKDCYGILKAAKIIGREGKKFRAE---------------ARF-------VRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       205 ~~~~~~~~ll~~~gi~~~~g~~f~~~---------------~~~-------~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      .+.+.+.+.|.++||.+++.  |..+               ++.       +|+++..  +++++++++++|+++++
T Consensus       310 ~~~~~l~~~L~~~gI~v~~~--~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~  384 (424)
T 2po3_A          310 IHRDLVMEVLKAEGVHTRAY--FSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCAT  384 (424)
T ss_dssp             SCHHHHHHHHHHTTEECBCT--TCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHCCCceecc--cCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence            34556666777899999872  2210               122       6666323  89999999999998765

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.81  E-value=8.8e-19  Score=154.19  Aligned_cols=216  Identities=11%  Similarity=0.021  Sum_probs=150.9

Q ss_pred             cccChhhhcccCC-CCceEEEEcCCCCCChhhH---HHhhcCCCcEEEeecccc-----CCCCCCCCCCCCCeEEEeccc
Q 024997           21 FEGEANLWGNASS-DTHLVEFVTAPNNPDGQMN---KAVLKGPYAKSIYDHAYF-----WPHFAPIPAPADEELMIFTIS   91 (259)
Q Consensus        21 ~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~---~~la~~~~~~vi~De~y~-----~~~~~~~~~~~~~~i~~~S~S   91 (259)
                      +.+|+++|++.+. .+++++++++|+||++.-+   .++|+++|+++|+||+|+     .......  .....+++.|+|
T Consensus       170 ~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~--~~~~di~~~s~s  247 (447)
T 3h7f_A          170 HLIDMDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP--VPHADVVSTTVH  247 (447)
T ss_dssp             CSCCHHHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS--TTTCSEEEEESS
T ss_pred             CCcCHHHHHHHHHhcCCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC--CCCCcEEEecCC
Confidence            5688999998884 4788988999999999766   388999999999999972     1111111  123358899999


Q ss_pred             cccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCC-CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh
Q 024997           92 KLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGV-SRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISL  170 (259)
Q Consensus        92 K~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  170 (259)
                      |.++  |+|.||++++ +++++.+.........+. +...+.++..++...    .+..+.+.++++.++++.+.+.|++
T Consensus       248 K~l~--G~~gG~i~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~----~~~~~~~~~~~~~~~~~~l~~~L~~  320 (447)
T 3h7f_A          248 KTLG--GGRSGLIVGK-QQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIA----ATPEFADRQRRTLSGARIIADRLMA  320 (447)
T ss_dssp             GGGC--CCSCEEEEEC-GGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT----TSHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cCCC--CCCeEEEEEC-HHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHh----hCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9984  8899999999 589888877654443333 334355555555531    3335677888999999999999886


Q ss_pred             c----CCCccccccccccccceee-CCCCCeeEEEecCCC--chHHHHHHHHHcCeeee----cCCcccC-CCCeEEEEe
Q 024997          171 S----NRFSLQEIAPQYCTYFKKI-RPPSPAYAWVKCERE--EDKDCYGILKAAKIIGR----EGKKFRA-EARFVRLSL  238 (259)
Q Consensus       171 ~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~----~g~~f~~-~~~~~Ris~  238 (259)
                      .    .+             +... .+..+.++|+++...  +.+.+.++|+++||.++    |+..+++ .++++||+.
T Consensus       321 ~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~  387 (447)
T 3h7f_A          321 PDVAKAG-------------VSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGT  387 (447)
T ss_dssp             HHHHHTT-------------CEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEEC
T ss_pred             ccccCCC-------------eEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccC
Confidence            5    11             2222 234567788887543  56778888988899998    6543332 357899997


Q ss_pred             e------cChhhHHHHHHHHHHHhhh
Q 024997          239 L------KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       239 ~------~~~~~~~~~~~~l~~~l~~  258 (259)
                      .      .++++++++++.|.+++++
T Consensus       388 ~~~~~~~~~~eei~~~~~~l~~~l~~  413 (447)
T 3h7f_A          388 PALATRGFGDTEFTEVADIIATALAT  413 (447)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred             HHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence            3      3679999999999988764

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.81  E-value=7.7e-20  Score=159.85  Aligned_cols=211  Identities=11%  Similarity=-0.013  Sum_probs=137.3

Q ss_pred             ChhhhcccCCC---CceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccccC-CCCCCCC-CCCCCeEEEec
Q 024997           24 EANLWGNASSD---THLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAYFW-PHFAPIP-APADEELMIFT   89 (259)
Q Consensus        24 d~~~l~~~~~~---~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y~~-~~~~~~~-~~~~~~i~~~S   89 (259)
                      |+++|++.+++   ++++++++.++|++|.+.         .++|+++|+++|+||+|-+ ....... ...+....+.|
T Consensus       185 d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t  264 (427)
T 3fq8_A          185 DLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFGVTPDLTT  264 (427)
T ss_dssp             CHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTTCCCSEEE
T ss_pred             CHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcCCCCChhh
Confidence            78888888743   567756655567777655         3899999999999999921 1110010 11111122579


Q ss_pred             cccccCCCcceEEEEEecCHHHHHHHHHh---hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 024997           90 ISKLTGHAGSRFGWAVIKDEAVYQRMSAY---ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSK  166 (259)
Q Consensus        90 ~SK~~g~~G~R~G~i~~~~~~~~~~~~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (259)
                      +||.++ +|+|+||++++ +++++.+...   ....+++.+++.++++.++++..   ..++    ..++++++.+.+.+
T Consensus       265 ~sK~~~-~G~~~G~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~---~~~~----~~~~~~~~~~~~~~  335 (427)
T 3fq8_A          265 LGKIIG-GGLPVGAYGGK-REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELL---RQPG----TYEYLDQITKRLSD  335 (427)
T ss_dssp             ECGGGG-TTSSCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHH---TSTT----HHHHHHHHHHHHHH
T ss_pred             hhhhhh-CCcceEEEEEc-HHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHH---HhcC----HHHHHHHHHHHHHH
Confidence            999999 89999999998 7999887653   23345678999999999888753   1223    35556666666666


Q ss_pred             HHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCc--------------hHHHHHHHHHcCeeeecCCcccCCCC
Q 024997          167 IISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREE--------------DKDCYGILKAAKIIGREGKKFRAEAR  232 (259)
Q Consensus       167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ll~~~gi~~~~g~~f~~~~~  232 (259)
                      .|+++..    .+.      +....+..|.++|+.+....              ...+.+.+.++||.++|+..     .
T Consensus       336 ~l~~~~~----~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~-----~  400 (427)
T 3fq8_A          336 GLLAIAQ----ETG------HAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF-----E  400 (427)
T ss_dssp             HHHHHHH----HTT------CCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT-----S
T ss_pred             HHHHHHH----hCC------CCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCC-----C
Confidence            6654321    000      11112334667777765421              12344455578999998542     3


Q ss_pred             eEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          233 FVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       233 ~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      .+|+++..+++++++++++|++++++
T Consensus       401 r~~~~~~~t~e~i~~~l~~l~~~l~~  426 (427)
T 3fq8_A          401 AGFTSLAHTEEDIDATLAAARTVMSA  426 (427)
T ss_dssp             CEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence            56666666999999999999998864

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.80  E-value=7.4e-20  Score=161.74  Aligned_cols=232  Identities=11%  Similarity=-0.015  Sum_probs=155.9

Q ss_pred             CCCcccch----hhhhhccCcc-----------cccccChhhhcccCC---CCceEEEEcCCCCCChhhH-----HHhhc
Q 024997            1 MPFYPLYQ----EQTDYFESVD-----------YKFEGEANLWGNASS---DTHLVEFVTAPNNPDGQMN-----KAVLK   57 (259)
Q Consensus         1 ~P~y~~~~----~~~~~~g~~~-----------~~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~-----~~la~   57 (259)
                      +|+|+...    ..++..|..+           ..+.+|+++|++.+.   ++++++++++||||||.++     .++|+
T Consensus       162 ~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~  241 (465)
T 3e9k_A          162 AKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQ  241 (465)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHH
T ss_pred             CCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHH
Confidence            46777633    3555566553           235678999999984   6889999999999999998     38999


Q ss_pred             CCCcEEEeeccccCCCCCCCC-CCCCCeEEEeccccccC-CCcceEEEEEecCHHHHHHHHHhhhh--------------
Q 024997           58 GPYAKSIYDHAYFWPHFAPIP-APADEELMIFTISKLTG-HAGSRFGWAVIKDEAVYQRMSAYISL--------------  121 (259)
Q Consensus        58 ~~~~~vi~De~y~~~~~~~~~-~~~~~~i~~~S~SK~~g-~~G~R~G~i~~~~~~~~~~~~~~~~~--------------  121 (259)
                      ++|+++|+|+++..+ ..++. ...+.+++++|++|.++ .+| ++|+++++ +++.+.+......              
T Consensus       242 ~~g~~vi~D~a~~~g-~~~~~~~~~~~D~~~~s~~K~l~~gp~-~~g~l~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~  318 (465)
T 3e9k_A          242 AKGCYVGFDLAHAVG-NVELYLHDWGVDFACWCSYKYLNAGAG-GIAGAFIH-EKHAHTIKPALVGWFGHELSTRFKMDN  318 (465)
T ss_dssp             HTTCEEEEECTTTTT-TSCCCHHHHTCCEEEECSSSTTCCCTT-CCCEEEEC-GGGTTTSCCSSCCGGGBCHHHHTTCCS
T ss_pred             HcCCEEEEEhhhhcC-CcCCchhhcCCCEEEECcccccccCCC-ceEEEEEc-HHHHhhcCCcccCccCCCCCcccccCC
Confidence            999999999988311 11121 12346789999999993 344 68999998 5776654321100              


Q ss_pred             -----------hcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhc----------CCCcccccc
Q 024997          122 -----------NTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLS----------NRFSLQEIA  180 (259)
Q Consensus       122 -----------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~  180 (259)
                                 ....++.+...+..++++..    .+..+++.+++++++++.+.+.|+++          ++       
T Consensus       319 ~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g-------  387 (465)
T 3e9k_A          319 KLQLIPGVCGFRISNPPILLVCSLHASLEIF----KQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPV-------  387 (465)
T ss_dssp             CCCBCSSGGGGCCSCCCHHHHHHHHHHHHHH----HHHCHHHHHHHHHHHHHHHHHHHHHHCC---------C-------
T ss_pred             CcCcCCChHHhccCCccHHHHHHHHHHHHHH----HHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCC-------
Confidence                       00134445455555555532    11126778888999999999998874          22       


Q ss_pred             ccccccceeeCCC----CCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEee-c--ChhhHHHHHHHHH
Q 024997          181 PQYCTYFKKIRPP----SPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL-K--SQDDFDLLLHRLD  253 (259)
Q Consensus       181 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~-~--~~~~~~~~~~~l~  253 (259)
                            +....|.    .|.++++.++. +...+.+.|.++||.++.     .+++++|+|++ .  +.++++++++.|+
T Consensus       388 ------~~~~~p~~~~~~g~~~~~~~~~-~~~~l~~~L~~~Gi~v~~-----~~~~~iRis~~~~~~t~edi~~~~~~l~  455 (465)
T 3e9k_A          388 ------VNIITPSHVEERGCQLTITFSV-PNKDVFQELEKRGVVCDK-----RNPNGIRVAPVPLYNSFHDVYKFTNLLT  455 (465)
T ss_dssp             ------EEECSCSSGGGBCSCEEEEECC-TTCCHHHHHHTTTEECEE-----ETTTEEEEBCCTTTCCHHHHHHHHHHHH
T ss_pred             ------eEEeCCCCHhhcccEEEEEecC-CHHHHHHHHHHCCEEEec-----CCCCEEEEeCcccCCCHHHHHHHHHHHH
Confidence                  3333443    36677887763 333444455567999873     23589999983 2  8999999999999


Q ss_pred             HHhhh
Q 024997          254 ELISK  258 (259)
Q Consensus       254 ~~l~~  258 (259)
                      +++++
T Consensus       456 ~~l~~  460 (465)
T 3e9k_A          456 SILDS  460 (465)
T ss_dssp             HHHTC
T ss_pred             HHHHh
Confidence            98864

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.80  E-value=1.9e-18  Score=153.54  Aligned_cols=213  Identities=14%  Similarity=0.039  Sum_probs=149.2

Q ss_pred             cccChhhhcccCC-CCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc------CCCCCCCCCCCCCeEEEe
Q 024997           21 FEGEANLWGNASS-DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF------WPHFAPIPAPADEELMIF   88 (259)
Q Consensus        21 ~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~------~~~~~~~~~~~~~~i~~~   88 (259)
                      +.+|+++|++.++ +++++|++ +++||+ .++     .++|+++|+++|+|++|+      +....+++   ..++++.
T Consensus       178 ~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~---~~div~~  252 (483)
T 1rv3_A          178 GYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE---HCHVVTT  252 (483)
T ss_dssp             CSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG---TCSEEEE
T ss_pred             CcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC---CCcEEEe
Confidence            5688999999997 78999888 999998 655     389999999999999983      11111121   3468999


Q ss_pred             ccccccCCCcceEEEEEecCH--------------HHHHHHHHhhhhhcCC-CCHHHHHHHHHHHHHHHhcCCcchHHHH
Q 024997           89 TISKLTGHAGSRFGWAVIKDE--------------AVYQRMSAYISLNTMG-VSRECQLRAFKLLKVVLEDGGNNIFEFG  153 (259)
Q Consensus        89 S~SK~~g~~G~R~G~i~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~  153 (259)
                      |+||.+  .|+|.||++++++              ++.+.+.........+ ++.....+...+++..    ....+++.
T Consensus       253 s~~K~l--~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~----~~~~~~~~  326 (483)
T 1rv3_A          253 TTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA----MTPEFKEY  326 (483)
T ss_dssp             ESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH----TSHHHHHH
T ss_pred             cCcccC--CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHH----hChhHHHH
Confidence            999987  5888899999852              2344443322222233 3334444445556542    23356778


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCC-CCeeEEEecCC--CchHHHHHHHHHcCeeee----cCCc
Q 024997          154 YNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPP-SPAYAWVKCER--EEDKDCYGILKAAKIIGR----EGKK  226 (259)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~ll~~~gi~~~----~g~~  226 (259)
                      .+++.++++.+.+.|++++              +....+. ...++|+++..  .+.+.+.+.|++.||.+.    ||..
T Consensus       327 ~~~~~~~~~~l~~~L~~~g--------------~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~  392 (483)
T 1rv3_A          327 QRQVVANCRALSAALVELG--------------YKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDK  392 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--------------CEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCS
T ss_pred             HHHHHHHHHHHHHHHHhcC--------------CEeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCC
Confidence            8899999999999998763              2222332 34577888864  245667788888999999    8875


Q ss_pred             ccCCCCeEEEEeec--C----hhhHHHHHHHHHHHhhh
Q 024997          227 FRAEARFVRLSLLK--S----QDDFDLLLHRLDELISK  258 (259)
Q Consensus       227 f~~~~~~~Ris~~~--~----~~~~~~~~~~l~~~l~~  258 (259)
                      +..+++++|||++.  +    ++++++++++|.++++.
T Consensus       393 ~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          393 SALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             CTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence            33346899999965  4    79999999999988753

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.80  E-value=2.2e-19  Score=157.13  Aligned_cols=209  Identities=12%  Similarity=0.054  Sum_probs=136.1

Q ss_pred             ChhhhcccCC---CCceEEEEcCCCCCChhhH----------HHhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEE
Q 024997           24 EANLWGNASS---DTHLVEFVTAPNNPDGQMN----------KAVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMI   87 (259)
Q Consensus        24 d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~----------~~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~   87 (259)
                      |+++|++.+.   +++++ ++++|+||+|.++          .++|+++|+++|+||+|  | ....... ...+....+
T Consensus       186 d~~~le~~l~~~~~~~~~-vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pdi  263 (429)
T 4e77_A          186 DLASVRQAFEQYPQEVAC-IIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPDL  263 (429)
T ss_dssp             CHHHHHHHHHHSTTTEEE-EEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCSE
T ss_pred             CHHHHHHHHHhcCCCEEE-EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCCe
Confidence            7788888874   34455 7788887776553          38899999999999999  3 1111110 111111114


Q ss_pred             eccccccCCCcceEEEEEecCHHHHHHHHHh---hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 024997           88 FTISKLTGHAGSRFGWAVIKDEAVYQRMSAY---ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENL  164 (259)
Q Consensus        88 ~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (259)
                      .|+||.++ +|+|+||++++ +++++.+...   ....+++.+++.+.++.+.++..   ..+++    .++++++.+.+
T Consensus       264 ~t~sK~~~-~G~~~G~~~~~-~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~---~~~~~----~~~~~~~~~~l  334 (429)
T 4e77_A          264 TCLGKIIG-GGMPVGAFGGR-REVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEI---SQVGV----YETLTELTDSL  334 (429)
T ss_dssp             EEEEGGGG-TTSCCEEEEEC-HHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHH---TSTTH----HHHHHHHHHHH
T ss_pred             eeeccccc-CCCCeEEEEEC-HHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHH---HhcCH----HHHHHHHHHHH
Confidence            59999998 89999999998 7998887653   23456788999999999988854   12333    45555666666


Q ss_pred             HHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCc---------------hHHHHHHHHHcCeeeecCCcccC
Q 024997          165 SKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREE---------------DKDCYGILKAAKIIGREGKKFRA  229 (259)
Q Consensus       165 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ll~~~gi~~~~g~~f~~  229 (259)
                      .+.|+++..    .++      +....+..|.++|+.+...+               ...+.+.|.++||.++|+.    
T Consensus       335 ~~~L~~~~~----~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----  400 (429)
T 4e77_A          335 ATGLRHAAK----EEN------IPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSA----  400 (429)
T ss_dssp             HHHHHHHHH----HTT------CCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSST----
T ss_pred             HHHHHHHHH----hCC------CceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecC----
Confidence            665554310    000      11112335677788776531               1334444556799999853    


Q ss_pred             CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          230 EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       230 ~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                       ...+|+++..+++++++++++|++++++
T Consensus       401 -~~~~~~~~~~t~e~i~~~l~~l~~~l~~  428 (429)
T 4e77_A          401 -FEAGFMSLAHSNEDIQKTVNAARRCFAK  428 (429)
T ss_dssp             -TSCEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             -CCCEEEeccCCHHHHHHHHHHHHHHHHh
Confidence             2456777766999999999999998864

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.80  E-value=7.4e-19  Score=150.69  Aligned_cols=231  Identities=9%  Similarity=0.033  Sum_probs=151.0

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY   69 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y   69 (259)
                      +|+|+.+...++..|.++.      .+.+|+++|++.+++++++++   |+||||.+.     .++|+++|+++|+|++|
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~  161 (374)
T 3uwc_A           85 ANTFIASVGAIVQAGATPVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQ  161 (374)
T ss_dssp             SSSCHHHHHHHHHTTCEEEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCccHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCC
Confidence            4889999888888887652      356789999999988888855   999999976     38999999999999998


Q ss_pred             c-CCCCCCCCCCCCCeEEEeccc--cccCCCcceEEEEEecCHHHHHHHHHhhhh------------hcCCCCHHHHHHH
Q 024997           70 F-WPHFAPIPAPADEELMIFTIS--KLTGHAGSRFGWAVIKDEAVYQRMSAYISL------------NTMGVSRECQLRA  134 (259)
Q Consensus        70 ~-~~~~~~~~~~~~~~i~~~S~S--K~~g~~G~R~G~i~~~~~~~~~~~~~~~~~------------~~~~~~~~~q~~~  134 (259)
                      - +..+..-.-..-.++++.|+|  |.++.+|. .|+++++++++.+.+......            .....+.....+.
T Consensus       162 ~~g~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~  240 (374)
T 3uwc_A          162 TILGRINDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIA  240 (374)
T ss_dssp             CTTCEETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHH
T ss_pred             ccCceeCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHH
Confidence            2 111100000111267788866  99985565 899998766788877765421            1122344433322


Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCC-CccccccccccccceeeCCCC---Ce-eEEEecCCCchHH
Q 024997          135 FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNR-FSLQEIAPQYCTYFKKIRPPS---PA-YAWVKCEREEDKD  209 (259)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~  209 (259)
                      ...+         ..+++..++.+++.+.+.+.|+++++ +.+..            .+.+   .+ .+.+...  +.+.
T Consensus       241 ~~~~---------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~--~~~~  297 (374)
T 3uwc_A          241 NRLM---------NQLETITEKRRGIAHLYDQSFVDLSEFIDVPV------------RREGVYHVFHIYVLRVK--YRDQ  297 (374)
T ss_dssp             HHHG---------GGHHHHHHHHHHHHHHHHHHTGGGTTTEECCC------------CCTTEECCCSSEEEEET--THHH
T ss_pred             HHHH---------HHHHHHHHHHHHHHHHHHHHhccCCCeEEecc------------CCCCCceeeEEEEEEcC--CHHH
Confidence            2222         23455677777788888888877653 32211            1111   11 1222222  4556


Q ss_pred             HHHHHHHcCeeeecCCccc----C------------------CCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          210 CYGILKAAKIIGREGKKFR----A------------------EARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       210 ~~~ll~~~gi~~~~g~~f~----~------------------~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      +.+.|.++||.++++....    +                  ..+.+|+++..  ++++++++++.|++++++
T Consensus       298 l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~  370 (374)
T 3uwc_A          298 LFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE  370 (374)
T ss_dssp             HHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence            6667778899999875111    0                  02679999865  899999999999999875

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.79  E-value=7.8e-20  Score=160.00  Aligned_cols=209  Identities=13%  Similarity=0.041  Sum_probs=139.0

Q ss_pred             ChhhhcccCC---CCceEEEEcCCCC-CChhhH---------HHhhcCCCcEEEeeccccC-CCCCCCC-CCCCCeEEEe
Q 024997           24 EANLWGNASS---DTHLVEFVTAPNN-PDGQMN---------KAVLKGPYAKSIYDHAYFW-PHFAPIP-APADEELMIF   88 (259)
Q Consensus        24 d~~~l~~~~~---~~~~~i~i~~p~N-PtG~~~---------~~la~~~~~~vi~De~y~~-~~~~~~~-~~~~~~i~~~   88 (259)
                      |+++|++.+.   +++++ ++++|+| ++|.+.         .++|+++|+++|+||+|.+ ....... ...+....+.
T Consensus       186 d~~~le~~l~~~~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~  264 (429)
T 3k28_A          186 DLESVKYAFEQFGDDIAC-VIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLT  264 (429)
T ss_dssp             CHHHHHHHHHHHGGGEEE-EEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHTCCCSEE
T ss_pred             CHHHHHHHHHhCCCCEEE-EEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHhCCCCcee
Confidence            7788888774   34555 5556654 555543         3899999999999999931 1111100 0111122246


Q ss_pred             ccccccCCCcceEEEEEecCHHHHHHHHHhh---hhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 024997           89 TISKLTGHAGSRFGWAVIKDEAVYQRMSAYI---SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLS  165 (259)
Q Consensus        89 S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (259)
                      |+||.++ .|+|+||++++ +++++.+....   ...+++.+++.|.++.++++.     .+   ++.+++++++++.+.
T Consensus       265 t~sK~~~-~G~~iG~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~-----~~---~~~~~~~~~~~~~l~  334 (429)
T 3k28_A          265 CLGKVIG-GGLPVGAYGGK-AEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQ-----LT---PESYVEFERKAEMLE  334 (429)
T ss_dssp             EECGGGG-TTSCCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHT-----CC---HHHHHHHHHHHHHHH
T ss_pred             hhhhhhc-CCCCeEEEEEc-HHHHhhhccCCCccccCCCCCChHHHHHHHHHHHH-----HH---HHHHHHHHHHHHHHH
Confidence            8999998 69999999999 79988876532   334678899999999999984     22   567788888888888


Q ss_pred             HHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCc--------------hHHHHHHHHHcCeeeecCCcccCCC
Q 024997          166 KIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREE--------------DKDCYGILKAAKIIGREGKKFRAEA  231 (259)
Q Consensus       166 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ll~~~gi~~~~g~~f~~~~  231 (259)
                      +.|+++..    .++     .+...++ .|.++++.+....              .+.+.+.|.++||.++|+     +.
T Consensus       335 ~~L~~~~~----~~~-----~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-----~~  399 (429)
T 3k28_A          335 AGLRKAAE----KHG-----IPHHINR-AGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPS-----QF  399 (429)
T ss_dssp             HHHHHHHH----HTT-----CCCEEEE-ETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSS-----TT
T ss_pred             HHHHHHHh----hCC-----CCEEEEe-eccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecC-----CC
Confidence            88876421    000     0112233 3445555543211              133444455789999985     24


Q ss_pred             CeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          232 RFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       232 ~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +.+|+++..+++++++++++|++++++
T Consensus       400 ~~~r~~~~~t~e~i~~~l~~l~~~l~~  426 (429)
T 3k28_A          400 EGLFLSTVHSDADIEATIAAAEIAMSK  426 (429)
T ss_dssp             SCBCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHHHHH
Confidence            678998877999999999999998864

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.79  E-value=1.7e-18  Score=152.36  Aligned_cols=203  Identities=12%  Similarity=0.100  Sum_probs=140.0

Q ss_pred             hhhhcccCC----CCceEEEEcCCC-CCChhhH---------HHhhcCCCcEEEeeccc--cCCCCC--CCC--CCCCCe
Q 024997           25 ANLWGNASS----DTHLVEFVTAPN-NPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFA--PIP--APADEE   84 (259)
Q Consensus        25 ~~~l~~~~~----~~~~~i~i~~p~-NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~--~~~--~~~~~~   84 (259)
                      +++|++.++    +++++ ++++|+ ||||.+.         .++|+++|+++|+||+|  |+....  .+.  +.... 
T Consensus       205 ~~~le~~l~~~~~~~~~~-vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d-  282 (449)
T 3a8u_X          205 ADELLKLIELHDASNIAA-VFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPD-  282 (449)
T ss_dssp             HHHHHHHHHHHCGGGEEE-EEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCS-
T ss_pred             HHHHHHHHHhcCCCCEEE-EEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCC-
Confidence            778888874    34556 666775 6799743         28999999999999999  432111  111  22222 


Q ss_pred             EEEeccccccCCCc-ceEEEEEecCHHHHHHHHHh---------hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHH
Q 024997           85 LMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAY---------ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGY  154 (259)
Q Consensus        85 i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  154 (259)
                        +.|+||.++ .| +|+||++++ +++++.+...         ....+.+.+++.+.++.++++...+       +...
T Consensus       283 --i~s~sK~l~-~G~~~~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~-------~~~~  351 (449)
T 3a8u_X          283 --LMCIAKQVT-NGAIPMGAVIAS-TEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQK-------ENLV  351 (449)
T ss_dssp             --EEEECGGGG-TTSSCCEEEEEE-HHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHH-------TTHH
T ss_pred             --EEEEccccc-CCCCceEEEEEC-HHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHh-------cCHH
Confidence              239999998 58 999999999 6999988764         1234567889999988888875311       1246


Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCc--h-----HHHHHHHHHcCeeeecCCcc
Q 024997          155 NTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREE--D-----KDCYGILKAAKIIGREGKKF  227 (259)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~ll~~~gi~~~~g~~f  227 (259)
                      ++++++.+.+.+.|++++.+..          +.... ..|.++|++++...  .     ++...++ ++||.++|+   
T Consensus       352 ~~~~~~~~~l~~~L~~l~~~~~----------~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~---  416 (449)
T 3a8u_X          352 QSVAEVAPHFEKALHGIKGAKN----------VIDIR-NFGLAGAIQIAPRDGDAIVRPFEAGMALW-KAGFYVRFG---  416 (449)
T ss_dssp             HHHHHHHHHHHHHHHTTTTSTT----------EEEEE-EETTEEEEEECCBTTBSSHHHHHHHHHHH-HHTEECEEE---
T ss_pred             HHHHHHHHHHHHHHHHHhcCCC----------eEEEe-eeEEEEEEEEecCcccccccHHHHHHHHH-HCCcEEecC---
Confidence            7788888888888876432110          22222 34678888886431  1     3444444 679999996   


Q ss_pred             cCCCCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          228 RAEARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       228 ~~~~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                        + +++||++.  .+++++++++++|++++++
T Consensus       417 --g-~~iRis~~~~~t~~~i~~~l~~l~~~l~~  446 (449)
T 3a8u_X          417 --G-DTLQFGPTFNSKPQDLDRLFDAVGEVLNK  446 (449)
T ss_dssp             --T-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             --C-CEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence              2 78999954  4999999999999998764

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.79  E-value=2.4e-18  Score=152.45  Aligned_cols=206  Identities=13%  Similarity=0.041  Sum_probs=135.3

Q ss_pred             hhhhcccCC----CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeE
Q 024997           25 ANLWGNASS----DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEEL   85 (259)
Q Consensus        25 ~~~l~~~~~----~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i   85 (259)
                      .++|++.+.    +++++|++..++|++|.+.         .++|+++|+++|+||+|  |+.......    +..+.  
T Consensus       209 ~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pd--  286 (472)
T 3hmu_A          209 ARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPH--  286 (472)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCS--
T ss_pred             HHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCc--
Confidence            566777774    3456644444456667654         28999999999999999  422211111    22222  


Q ss_pred             EEeccccccCCCcceEEEEEecCHHHHHHHHH--hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH-HHHH
Q 024997           86 MIFTISKLTGHAGSRFGWAVIKDEAVYQRMSA--YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMK-KRWE  162 (259)
Q Consensus        86 ~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~--~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~  162 (259)
                       +.+|||.++..|+|+||++++ +++++.+..  .....+++.+++.|+++.++|+...   .    +...++++ ++.+
T Consensus       287 -i~t~sK~l~gg~~plG~v~~~-~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~---~----~~~~~~~~~~~~~  357 (472)
T 3hmu_A          287 -IMTIAKGLSSGYAPIGGSIVC-DEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILE---E----ENILDHVRNVAAP  357 (472)
T ss_dssp             -EEEECGGGTTTSSCCEEEEEE-HHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHH---H----TTHHHHHHHTHHH
T ss_pred             -eeeechhhhcCCcceEEEEEC-HHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHH---H----hHHHHHHHHHHHH
Confidence             347899998555999999999 799998832  1334468889999999999988531   1    12466667 7777


Q ss_pred             HHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-c------------hHHHHHHHHHcCeeeecCCcccC
Q 024997          163 NLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-E------------DKDCYGILKAAKIIGREGKKFRA  229 (259)
Q Consensus       163 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~ll~~~gi~~~~g~~f~~  229 (259)
                      .+.+.|+.+...     +     .+..+++.+ .++++.+... .            ...+.+.|.++||.++|+     
T Consensus       358 ~l~~~L~~l~~~-----~-----~v~~vr~~G-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-----  421 (472)
T 3hmu_A          358 YLKEKWEALTDH-----P-----LVGEAKIVG-MMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHV-----  421 (472)
T ss_dssp             HHHHHHHGGGGS-----T-----TEEEEEEET-TEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEE-----
T ss_pred             HHHHHHHHHhcC-----C-----CeEEEEecC-ceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEec-----
Confidence            777777655321     1     133344444 4445555321 0            223444455789999984     


Q ss_pred             CCCeEEEE--eecChhhHHHHHHHHHHHhhh
Q 024997          230 EARFVRLS--LLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       230 ~~~~~Ris--~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      + +++||+  +..+++++++++++|++++++
T Consensus       422 g-~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  451 (472)
T 3hmu_A          422 G-DRMIISPPLVITPAEIDEMFVRIRKSLDE  451 (472)
T ss_dssp             T-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             C-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            2 899999  445999999999999988753

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.78  E-value=1.3e-17  Score=142.91  Aligned_cols=228  Identities=10%  Similarity=0.000  Sum_probs=152.0

Q ss_pred             CCCcccchhhhhhccCccccc------ccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc
Q 024997            1 MPFYPLYQEQTDYFESVDYKF------EGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY   69 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~------~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y   69 (259)
                      +|+|+.+...++..|.++..+      .+|+++|++.++++++++++++|   ||.+.     .++|+++|+++|+|++|
T Consensus        81 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~  157 (375)
T 2fnu_A           81 PISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSH  157 (375)
T ss_dssp             SSSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTT
T ss_pred             CCccHhHHHHHHHCCCEEEEeccCCCCCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECcc
Confidence            488999998888888765322      46888999999888898888877   89876     38899999999999998


Q ss_pred             c-CC--CCCCCCCCCCCeEEEeccc--cccCCCcceEEEEEe-cCHHHHHHHHHhhhhhc----------------CCCC
Q 024997           70 F-WP--HFAPIPAPADEELMIFTIS--KLTGHAGSRFGWAVI-KDEAVYQRMSAYISLNT----------------MGVS  127 (259)
Q Consensus        70 ~-~~--~~~~~~~~~~~~i~~~S~S--K~~g~~G~R~G~i~~-~~~~~~~~~~~~~~~~~----------------~~~~  127 (259)
                      . +.  ....+ +..+ .+.+.|+|  |.+|. |  +|++++ +++++++.+........                .+.+
T Consensus       158 ~~~~~~~~~~~-~~~~-~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (375)
T 2fnu_A          158 ALGSEYQNKKV-GGFA-LASVFSFHAIKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLN  232 (375)
T ss_dssp             CTTCEETTEET-TSSS-SEEEEECCTTSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCC
T ss_pred             ccCCeECCeec-cccC-CeEEEeCCCCCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCC
Confidence            2 11  11112 1111 58888999  99975 7  788877 44678888876543211                1333


Q ss_pred             HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCC-----CCCeeEEEec
Q 024997          128 RECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP-----PSPAYAWVKC  202 (259)
Q Consensus       128 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  202 (259)
                      .+...++...+         ..+++..++.+++++.+.+.|++++++.             ...+     ..++..|+.+
T Consensus       233 ~~~~a~~~~~~---------~~~~~~~~~~~~~~~~l~~~L~~~~~~~-------------~~~~~~~~~~~~~~~~~~~  290 (375)
T 2fnu_A          233 EIQSALGLSQL---------KKAPFLMQKREEAALTYDRIFKDNPYFT-------------PLHPLLKDKSSNHLYPILM  290 (375)
T ss_dssp             HHHHHHHHHHH---------TTHHHHHHHHHHHHHHHHHHHTTCSSEE-------------ESGGGCSSCCCCSCEEEEE
T ss_pred             HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhcCCCcc-------------ccCCCCCCCcceEEEEEEe
Confidence            43332222111         2456778888999999999998765422             1121     1234456776


Q ss_pred             CCC---chHHHHHHHHHcCeeeecC----C---ccc-------C------CCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          203 ERE---EDKDCYGILKAAKIIGREG----K---KFR-------A------EARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       203 ~~~---~~~~~~~ll~~~gi~~~~g----~---~f~-------~------~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      +..   +.+.+.+.|.++||.++.+    .   .|+       .      ..+++||+++.  +++++++++++|+++++
T Consensus       291 ~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~  370 (375)
T 2fnu_A          291 HQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFE  370 (375)
T ss_dssp             CGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CccccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence            542   3455556667889999832    1   111       0      12689999975  88999999999998875


Q ss_pred             h
Q 024997          258 K  258 (259)
Q Consensus       258 ~  258 (259)
                      +
T Consensus       371 ~  371 (375)
T 2fnu_A          371 S  371 (375)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.78  E-value=9.1e-18  Score=144.92  Aligned_cols=232  Identities=12%  Similarity=0.010  Sum_probs=150.3

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~   68 (259)
                      +|+|+.+...++..|.++.       .+.+|++.|++.+++++++++   |+||||.+.     .++|+++|+++|+|++
T Consensus       103 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a  179 (391)
T 3dr4_A          103 SLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAA  179 (391)
T ss_dssp             SSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred             CCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcCCCceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECc
Confidence            4889999998888887652       356788999999988888855   678999876     3899999999999999


Q ss_pred             cc-CCC--CCCCCCCCCCeEEEeccc--cccCCCcceEEEEEecCHHHHHHHHHhhhhhc--------------CCCCHH
Q 024997           69 YF-WPH--FAPIPAPADEELMIFTIS--KLTGHAGSRFGWAVIKDEAVYQRMSAYISLNT--------------MGVSRE  129 (259)
Q Consensus        69 y~-~~~--~~~~~~~~~~~i~~~S~S--K~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~  129 (259)
                      |- +..  ........  .+.+.|||  |.++  |.+.|+++++++++.+.+........              ...+.+
T Consensus       180 ~~~g~~~~~~~~~~~~--di~~~S~s~~K~l~--~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l  255 (391)
T 3dr4_A          180 EAVGATYRGKKSGSLG--DCATFSFFGNAIIT--TGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNI  255 (391)
T ss_dssp             TCTTCEETTEETTSSS--SEEEEECBTTSSSC--CBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHH
T ss_pred             ccccceECCeeecccC--CEEEEECCCCCcCC--cCCeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHH
Confidence            82 111  11111111  47778877  7664  45789999886678887766543211              233444


Q ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccc--cccccccceeeCCCCCeeEEEecCC---
Q 024997          130 CQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEI--APQYCTYFKKIRPPSPAYAWVKCER---  204 (259)
Q Consensus       130 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---  204 (259)
                      ..++....++         .+++..++.+++.+.+.+.|+++ ++.+...  ++        ........+++.++.   
T Consensus       256 ~aa~~~~~~~---------~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~--------~~~~~~~~~~i~~~~~~~  317 (391)
T 3dr4_A          256 QAAIGLAQLE---------RVDEHLAARERVVGWYEQKLARL-GNRVTKPHVAL--------TGRHVFWMYTVRLGEGLS  317 (391)
T ss_dssp             HHHHHHHHHH---------THHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCT--------TSCCCCSSEEEEECSSCS
T ss_pred             HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCC--------CCcceeEEEEEEECCccc
Confidence            3333222222         34556777788888888888876 3222110  00        001122234566553   


Q ss_pred             CchHHHHHHHHHcCeeeecCCc---ccC----------------CCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          205 EEDKDCYGILKAAKIIGREGKK---FRA----------------EARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       205 ~~~~~~~~ll~~~gi~~~~g~~---f~~----------------~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      .+.+.+.+.|.++||.+++|..   ..+                ..+.+||++..  ++++++++++.|+++++
T Consensus       318 ~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~  391 (391)
T 3dr4_A          318 TTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVLV  391 (391)
T ss_dssp             SCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTCC
T ss_pred             hhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHhC
Confidence            2455666667788999998751   110                13578999865  89999999999998763

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.78  E-value=3.3e-18  Score=151.70  Aligned_cols=204  Identities=16%  Similarity=0.084  Sum_probs=139.3

Q ss_pred             hhhhcccCC----CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCC-----CCCCCCCe
Q 024997           25 ANLWGNASS----DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAP-----IPAPADEE   84 (259)
Q Consensus        25 ~~~l~~~~~----~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~-----~~~~~~~~   84 (259)
                      +++|++.+.    +++++|+++.++|++|.+.         .++|+++|+++|+||+|  |+.....     ..+..+. 
T Consensus       207 ~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pd-  285 (476)
T 3i5t_A          207 VQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPD-  285 (476)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCS-
T ss_pred             HHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcc-
Confidence            567777773    4567766666677888643         38999999999999999  4211111     1121222 


Q ss_pred             EEEeccccccCCCc-ceEEEEEecCHHHHHHHHHh-------hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Q 024997           85 LMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAY-------ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNT  156 (259)
Q Consensus        85 i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  156 (259)
                        +.++||.++ .| +|+|+++++ +++++.+...       ....+++.+++.++++.++|+...+       +...++
T Consensus       286 --i~t~sK~l~-~G~~plg~v~~~-~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~-------~~~~~~  354 (476)
T 3i5t_A          286 --IITFAKGVT-SGYVPLGGLAIS-EAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMER-------EGIVDQ  354 (476)
T ss_dssp             --EEEECGGGG-TTSSCCEEEEEC-HHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHH-------TTHHHH
T ss_pred             --hhhhhhhhc-CCCcCeEEEEEC-HHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHh-------HHHHHH
Confidence              337899998 59 999999999 7999988764       3345788999999999999985311       234667


Q ss_pred             HHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCc------------hHHHHHHHHHcCeeeecC
Q 024997          157 MKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREE------------DKDCYGILKAAKIIGREG  224 (259)
Q Consensus       157 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ll~~~gi~~~~g  224 (259)
                      ++++.+++.+.|+.+....          .+..+.+. |.++++++....            ...+.+.+.++||.++|.
T Consensus       355 ~~~~~~~l~~~L~~l~~~~----------~v~~v~~~-G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~  423 (476)
T 3i5t_A          355 AREMADYFAAALASLRDLP----------GVAETRSV-GLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL  423 (476)
T ss_dssp             HHHHHHHHHHHHHTTTTST----------TEEEEEEE-TTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE
T ss_pred             HHHHHHHHHHHHHHHhcCC----------CeEEEEec-CceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEec
Confidence            7788888888887543211          13334444 445556654320            223444455689999982


Q ss_pred             CcccCCCCeEEEE--eecChhhHHHHHHHHHHHhh
Q 024997          225 KKFRAEARFVRLS--LLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       225 ~~f~~~~~~~Ris--~~~~~~~~~~~~~~l~~~l~  257 (259)
                           + +++||+  +..+++++++++++|+++++
T Consensus       424 -----g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~  452 (476)
T 3i5t_A          424 -----G-DLCVISPPLIISRAQIDEMVAIMRQAIT  452 (476)
T ss_dssp             -----T-TEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             -----C-CEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                 2 899999  45599999999999999875

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.78  E-value=2.9e-18  Score=151.10  Aligned_cols=233  Identities=14%  Similarity=0.027  Sum_probs=153.5

Q ss_pred             CcccchhhhhhccCcc-----c--ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCC------CcEEE
Q 024997            3 FYPLYQEQTDYFESVD-----Y--KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGP------YAKSI   64 (259)
Q Consensus         3 ~y~~~~~~~~~~g~~~-----~--~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~------~~~vi   64 (259)
                      +|+.|...++..|.++     .  .+.+|+++|++.+++++++|++++|+||||.+.     .++|+++      |++++
T Consensus       148 ~h~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~  227 (452)
T 2dgk_A          148 VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMH  227 (452)
T ss_dssp             CCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEE
T ss_pred             CcHHHHHHHHHcCceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEE
Confidence            4667777778777765     1  467899999999988899999999999999997     3888884      99999


Q ss_pred             eeccc--c-----CCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHH-HHHHHhhhhh-----------cC
Q 024997           65 YDHAY--F-----WPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVY-QRMSAYISLN-----------TM  124 (259)
Q Consensus        65 ~De~y--~-----~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~-~~~~~~~~~~-----------~~  124 (259)
                      +|++|  +     .+.. ... ...+-+.+..|++| ++..|+++||+++.+++++ +.+.......           +.
T Consensus       228 vD~a~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~hK-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  305 (452)
T 2dgk_A          228 IDAASGGFLAPFVAPDI-VWDFRLPRVKSISASGHK-FGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSR  305 (452)
T ss_dssp             EECTTGGGTHHHHCTTC-CCSTTSTTEEEEEEETTT-TTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSC
T ss_pred             EEcccHHHHHHhhCccc-hhhcCCCCCcEEEECccc-ccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCC
Confidence            99999  2     1111 111 23344667889999 4568899999999754333 3331111110           00


Q ss_pred             -CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCC----CCCeeEE
Q 024997          125 -GVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP----PSPAYAW  199 (259)
Q Consensus       125 -~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  199 (259)
                       +...+.|+++...+..       +.+.+..++..++++++.+.|++++++.             ...+    ....++.
T Consensus       306 ~~~~~~~~~aal~~lg~-------~g~~~~~~~~~~~a~~l~~~L~~~~~~~-------------~~~~~~~~~~~~~v~  365 (452)
T 2dgk_A          306 PAGQVIAQYYEFLRLGR-------EGYTKVQNASYQVAAYLADEIAKLGPYE-------------FICTGRPDEGIPAVC  365 (452)
T ss_dssp             BCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTTSSEE-------------EEEECCTTTBSSEEE
T ss_pred             hhHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHhCCCeE-------------EecCCCCCCCeEEEE
Confidence             1134455555555432       3467778889999999999999876432             2221    2233445


Q ss_pred             EecCCC-----chHHHHHHHHHcCeeeecCCccc--CCCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          200 VKCERE-----EDKDCYGILKAAKIIGREGKKFR--AEARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       200 ~~~~~~-----~~~~~~~ll~~~gi~~~~g~~f~--~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      +.++..     +...+.+.|.++||.++......  .+.+++|++++.  +.++++.+++.|+++++
T Consensus       366 f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~  432 (452)
T 2dgk_A          366 FKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLK  432 (452)
T ss_dssp             EEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            555431     22455566667899765422111  134689999976  78899999999988764

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.77  E-value=2.4e-19  Score=156.60  Aligned_cols=206  Identities=12%  Similarity=0.041  Sum_probs=136.8

Q ss_pred             cChhhhcccCC---CCceEEEEcCCCCC-ChhhH---------HHhhcCCCcEEEeeccc--cCC-CCCCCC--CCCCCe
Q 024997           23 GEANLWGNASS---DTHLVEFVTAPNNP-DGQMN---------KAVLKGPYAKSIYDHAY--FWP-HFAPIP--APADEE   84 (259)
Q Consensus        23 ~d~~~l~~~~~---~~~~~i~i~~p~NP-tG~~~---------~~la~~~~~~vi~De~y--~~~-~~~~~~--~~~~~~   84 (259)
                      .|++.|++.++   +++++ ++++|+|| ||.+.         .++ +++|+++|+||+|  |.. ......  +.... 
T Consensus       184 ~d~~~le~~l~~~~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~d-  260 (424)
T 2e7u_A          184 NDPEGLREVLKRRGEEIAA-IIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFGGATELLGLKPD-  260 (424)
T ss_dssp             TCHHHHHHHHHHHGGGEEE-EEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTTHHHHHHTCCCS-
T ss_pred             CCHHHHHHHHHhCCCCEEE-EEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchhHHHHHhCCCcc-
Confidence            47788888774   34555 77788765 88654         278 9999999999999  311 100000  11122 


Q ss_pred             EEEeccccccCCCcceEEEEEecCHHHHHHHHHhh---hhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 024997           85 LMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI---SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRW  161 (259)
Q Consensus        85 i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  161 (259)
                        +.|+||.+| .|+|+||++++ +++++.+....   ...+++.+++.|.++.++++...+      .++..++++++.
T Consensus       261 --i~s~sK~l~-~G~~~G~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~------~~~~~~~~~~~~  330 (424)
T 2e7u_A          261 --LVTLGKILG-GGLPAAAYAGR-REIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE------NPGYYAYLEDLG  330 (424)
T ss_dssp             --EEEECGGGG-TTSSCEEEEEC-HHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH------CTHHHHHHHHHH
T ss_pred             --hhhhhhhhh-CCcceEEEEEc-HHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh------ccHHHHHHHHHH
Confidence              349999999 69999999999 69988776522   234567889999998888874311      134577788888


Q ss_pred             HHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--------------chHHHHHHHHHcCeeeecCCcc
Q 024997          162 ENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--------------EDKDCYGILKAAKIIGREGKKF  227 (259)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ll~~~gi~~~~g~~f  227 (259)
                      +.+.+.|+++..    .++   .  ....++ .|.++|+++...              ....+.+.|.++||.++|+.. 
T Consensus       331 ~~l~~~L~~~~~----~~~---~--~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-  399 (424)
T 2e7u_A          331 ARLEAGLKEVLK----EKG---L--PHTVNR-VGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNF-  399 (424)
T ss_dssp             HHHHHHHHHHHH----HTT---C--CCEEEE-ETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSS-
T ss_pred             HHHHHHHHHHHH----hCC---C--ceEEEe-eceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCC-
Confidence            888888876420    000   0  111233 456788888641              122344444478999999641 


Q ss_pred             cCCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          228 RAEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       228 ~~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                          ..+|+++..+++++++++++|++++
T Consensus       400 ----~~~~~~~~~t~~~i~~~l~~l~~~l  424 (424)
T 2e7u_A          400 ----EAAFLSVAHREEDVEKTLEALRKAL  424 (424)
T ss_dssp             ----SCEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             ----CceEeeccCCHHHHHHHHHHHHHhC
Confidence                3578887679999999999998864

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.77  E-value=3.5e-17  Score=142.60  Aligned_cols=230  Identities=14%  Similarity=0.086  Sum_probs=148.7

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~   68 (259)
                      +|+|+.+...++..|.++.       .+.+|+++|++.+++++++|+++   ||||...     .++|+++|+++|+|++
T Consensus        89 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~~~~i~~~~~~~~~~li~D~a  165 (418)
T 2c81_A           89 SLTWIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAITDKTKAIIPV---HLFGSMANMDEINEIAQEHNLFVIEDCA  165 (418)
T ss_dssp             SSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECCB---CCTTCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred             CCccHhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEEe---CCcCCcccHHHHHHHHHHCCCEEEEECc
Confidence            4889999998888887652       46778999999998888887754   5899875     3889999999999999


Q ss_pred             ccCCC---CCCCCCCCCCeEEEecc--ccccCCCcceEEEEEecCHHHHHHHHHhhhhhc------------CC------
Q 024997           69 YFWPH---FAPIPAPADEELMIFTI--SKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNT------------MG------  125 (259)
Q Consensus        69 y~~~~---~~~~~~~~~~~i~~~S~--SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~------------~~------  125 (259)
                      |....   ...+....  .+.+.||  ||.++. | |.||++++++++++.+........            ..      
T Consensus       166 ~~~~~~~~~~~~~~~~--~~~~~s~s~~K~~~~-g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (418)
T 2c81_A          166 QSHGSVWNNQRAGTIG--DIGAFSCQQGKVLTA-G-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKG  241 (418)
T ss_dssp             TCTTCEETTEETTSSS--SEEEEECCTTSSSCS-S-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECC
T ss_pred             ccccCccCCEeccccc--ceEEEeccCCcccCC-C-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccc
Confidence            93111   11121111  3778888  999986 8 999999964688888876543211            00      


Q ss_pred             -C------CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceee-CCCC---
Q 024997          126 -V------SRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKI-RPPS---  194 (259)
Q Consensus       126 -~------~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~---  194 (259)
                       .      ....+.+.  .+..      .+.+++..++.+++++.+.+.|+++++             +... .+++   
T Consensus       242 ~~~g~~~~~~~~~aa~--~~~~------l~~~~~~~~~~~~~~~~l~~~L~~~~g-------------~~~~~~~~~~~~  300 (418)
T 2c81_A          242 DIQGSNYCLSEFQSAI--LLDQ------LQELDDKNAIREKNAMFLNDALSKIDG-------------IKVMKRPPQVSR  300 (418)
T ss_dssp             SSCCCBCCCCHHHHHH--HHHH------HTTHHHHHHHHHHHHHHHHHHHTTSTT-------------EEECCCCTTEEE
T ss_pred             cccCcCCCcCHHHHHH--HHHH------HHHHHHHHHHHHHHHHHHHHHhccCCC-------------cccCCCCCCCcc
Confidence             0      01122211  1111      123555667777778888888876543             2222 2333   


Q ss_pred             -CeeEE-EecCC-----CchHHHHHHHHHc-Cee---eecCCcccC--------------------------C-------
Q 024997          195 -PAYAW-VKCER-----EEDKDCYGILKAA-KII---GREGKKFRA--------------------------E-------  230 (259)
Q Consensus       195 -~~~~~-~~~~~-----~~~~~~~~ll~~~-gi~---~~~g~~f~~--------------------------~-------  230 (259)
                       .++++ +.++.     .+.+.+.+.|.++ ||.   +++|.....                          +       
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (418)
T 2c81_A          301 QTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSER  380 (418)
T ss_dssp             CCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHH
T ss_pred             cccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHH
Confidence             22233 66652     3444555555566 999   887641100                          0       


Q ss_pred             --CCeEEEEee--c-ChhhHHHHHHHHHHHhhh
Q 024997          231 --ARFVRLSLL--K-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       231 --~~~~Ris~~--~-~~~~~~~~~~~l~~~l~~  258 (259)
                        .+.+||++.  . ++++++.+++.|++++++
T Consensus       381 ~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~  413 (418)
T 2c81_A          381 ASGQSIVIHHAILLAEPSHLSLLVDAVAELARK  413 (418)
T ss_dssp             HHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred             HHhCEEEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence              158999985  3 789999999999988753

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.77  E-value=1.4e-19  Score=158.58  Aligned_cols=211  Identities=12%  Similarity=0.007  Sum_probs=137.6

Q ss_pred             cChhhhcccCC---CCceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccccC-CCCCCCC-CCCCCeEEE
Q 024997           23 GEANLWGNASS---DTHLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAYFW-PHFAPIP-APADEELMI   87 (259)
Q Consensus        23 ~d~~~l~~~~~---~~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y~~-~~~~~~~-~~~~~~i~~   87 (259)
                      .|++.|++.++   +++++ ++++| +||||.+.         .++|+++|+++|+||+|-+ ....... +..+....+
T Consensus       188 ~d~~~le~~l~~~~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di  266 (434)
T 2epj_A          188 NDVEALERVFAEYGDRIAG-VIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLEGAQGYFNIEGDI  266 (434)
T ss_dssp             TCHHHHHHHHHHHGGGEEE-EEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSSTTHHHHHHTCCCSE
T ss_pred             CCHHHHHHHHHhCCCCEEE-EEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCcchhhHHhCCCCCe
Confidence            47788888875   35666 56666 46799754         2899999999999999921 1110000 000111124


Q ss_pred             eccccccCCCcceEEEEEecCHHHHHHHHHhh---hhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 024997           88 FTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI---SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENL  164 (259)
Q Consensus        88 ~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (259)
                      .|+||.++. |+|+||++++ +++++.+....   ...+++.+++.++++.++++...+       ++..++++++.+.+
T Consensus       267 ~s~sK~l~~-G~~~G~v~~~-~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~-------~~~~~~~~~~~~~l  337 (434)
T 2epj_A          267 IVLGKIIGG-GFPVGAVAGS-REVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE-------EPVYSVSREAAKAL  337 (434)
T ss_dssp             EEEEGGGGT-TSSCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHH
T ss_pred             eeecchhcC-Ccceeeeeec-HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHH
Confidence            599999984 9999999999 69888776522   234567889999988888875311       22466777777777


Q ss_pred             HHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--------------chHHHHHHHHHcCeeeecCCcccCC
Q 024997          165 SKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--------------EDKDCYGILKAAKIIGREGKKFRAE  230 (259)
Q Consensus       165 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ll~~~gi~~~~g~~f~~~  230 (259)
                      .+.|+++..    .+ +  .  ..... ..|.++|+.+...              ..+.+.+.|.++||.++||.     
T Consensus       338 ~~~L~~~~~----~~-~--~--~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----  402 (434)
T 2epj_A          338 EEAASEVLD----RT-G--L--PYTIN-RVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSN-----  402 (434)
T ss_dssp             HHHHHHHHH----HH-T--C--CEEEE-EETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSST-----
T ss_pred             HHHHHHHHh----hC-C--C--cEEEE-EeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccC-----
Confidence            777775420    00 0  0  11122 3456778887641              12334444557899999864     


Q ss_pred             CCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          231 ARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       231 ~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ...+|+++..+++++++++++|++++++
T Consensus       403 ~~~~~~~~~~t~e~i~~~l~~l~~~l~~  430 (434)
T 2epj_A          403 LEAVFTGLPHQGEALEIAVEGLRSSLKT  430 (434)
T ss_dssp             TSCEECCTTCSHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEeccCCHHHHHHHHHHHHHHHHH
Confidence            2357888766999999999999988753

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.76  E-value=7.3e-18  Score=148.70  Aligned_cols=232  Identities=9%  Similarity=-0.039  Sum_probs=152.8

Q ss_pred             CCCcccchhhhhhccCccc---------ccccChhhhcccC-C----CCceEEEEcCCCCCChhhH-----HHhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDY---------KFEGEANLWGNAS-S----DTHLVEFVTAPNNPDGQMN-----KAVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~---------~~~~d~~~l~~~~-~----~~~~~i~i~~p~NPtG~~~-----~~la~~~~~   61 (259)
                      +|.|+.+...++..|.++.         .+.+|+++|++.+ +    .++.++++++||||||.+.     .++|+++|+
T Consensus       183 ~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~  262 (456)
T 2z67_A          183 YASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDI  262 (456)
T ss_dssp             CCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTC
T ss_pred             CCCcHHHHHHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC
Confidence            3677777777887777641         2468899999988 4    4677888999999999997     389999999


Q ss_pred             EEEeeccccCCCC--CCCC--C-CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 024997           62 KSIYDHAYFWPHF--APIP--A-PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFK  136 (259)
Q Consensus        62 ~vi~De~y~~~~~--~~~~--~-~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~  136 (259)
                      ++++|++|-....  .+..  . .....+++.|++|.++ .+.++||+++.++++++.+.........+.+.+.+.+++.
T Consensus       263 ~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~  341 (456)
T 2z67_A          263 PHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLL  341 (456)
T ss_dssp             CEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHH
T ss_pred             cEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcC-CCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHH
Confidence            9999999821111  0110  0 0134678899999765 5688999999546888877433221111222444555544


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcC---CCccccccccccccceeeCCCCCeeEEEec--CCCchHHHH
Q 024997          137 LLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSN---RFSLQEIAPQYCTYFKKIRPPSPAYAWVKC--EREEDKDCY  211 (259)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  211 (259)
                      .+..       ..+++..++..++++++.+.|++++   ++             ....++  .++++++  +.. ...+.
T Consensus       342 ~l~~-------~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~-------------~v~~~~--~~v~~~~~~~~~-~~~l~  398 (456)
T 2z67_A          342 SMGS-------KNYLELVKNQKNSKKLLDELLNDLSKKTGG-------------KFLDVE--SPIASCISVNSD-PVEIA  398 (456)
T ss_dssp             HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-------------CBCCCC--CSSEEEEECSSC-HHHHH
T ss_pred             HHHH-------HHHHHHHHHHHHHHHHHHHHHHhcccccCC-------------EecCCC--CeEEEEEecccH-HHHHH
Confidence            4432       3567778899999999999998763   31             122333  3445555  332 23344


Q ss_pred             HHHHHcCe---eee------cCCcccC-CCCeEEEEeec--ChhhHHHHHHHHHHHh
Q 024997          212 GILKAAKI---IGR------EGKKFRA-EARFVRLSLLK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       212 ~ll~~~gi---~~~------~g~~f~~-~~~~~Ris~~~--~~~~~~~~~~~l~~~l  256 (259)
                      +.|.+.|+   .+.      +|.+|.. +.+++|+|++.  +++++++++++|++++
T Consensus       399 ~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          399 AKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             HHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred             HHHHHcCCCcceEEeecCccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence            44556675   332      2445543 35899999873  8999999999998865

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.75  E-value=5e-19  Score=155.93  Aligned_cols=204  Identities=11%  Similarity=-0.009  Sum_probs=133.0

Q ss_pred             cChhhhcccCC---CCceEEEEcCCC-CCChhhH---------HHhhcCCCcEEEeeccc--cC-CCCCCCC--CCCCCe
Q 024997           23 GEANLWGNASS---DTHLVEFVTAPN-NPDGQMN---------KAVLKGPYAKSIYDHAY--FW-PHFAPIP--APADEE   84 (259)
Q Consensus        23 ~d~~~l~~~~~---~~~~~i~i~~p~-NPtG~~~---------~~la~~~~~~vi~De~y--~~-~~~~~~~--~~~~~~   84 (259)
                      .|+++|++.++   +++++ ++++|+ ||||.+.         .++|+++|+++|+||+|  |. .......  +... .
T Consensus       186 ~d~~~le~~l~~~~~~~~~-vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~-d  263 (453)
T 2cy8_A          186 DDIEGMREVFANHGSDIAA-FIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGMQALLDVQP-D  263 (453)
T ss_dssp             TCHHHHHHHHHHHGGGEEE-EEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTTHHHHHHTCCC-S
T ss_pred             CCHHHHHHHHHhcCCCEEE-EEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCchhhhHHhCCCC-c
Confidence            47788888875   35666 566665 7799753         28999999999999999  31 1100010  1111 1


Q ss_pred             EEEeccccccCCCcceEEEEEecCHHHHHHHHH-----hhhhhcCCCCHHHHHHHHHHHHH-HHhcCCcchHHHHHHHHH
Q 024997           85 LMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSA-----YISLNTMGVSRECQLRAFKLLKV-VLEDGGNNIFEFGYNTMK  158 (259)
Q Consensus        85 i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~  158 (259)
                        +.|+||.++ .|+|+||++++ +++++.+..     .....+++.+++.+.++.++++. . .       ++..++++
T Consensus       264 --i~s~sK~l~-~G~~~G~v~~~-~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~-------~~~~~~~~  331 (453)
T 2cy8_A          264 --LTCLAKASA-GGLPGGILGGR-EDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-E-------DDVCAKIN  331 (453)
T ss_dssp             --EEEEEGGGG-TTSSCEEEEEC-HHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-H-------TTHHHHHH
T ss_pred             --EEEEChhhh-CCcceEEEech-HHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-h-------hhHHHHHH
Confidence              349999998 59999999999 699887755     12334577889999998888873 2 1       22456777


Q ss_pred             HHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-----C------------c---hHHHHHHHHHcC
Q 024997          159 KRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-----E------------E---DKDCYGILKAAK  218 (259)
Q Consensus       159 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------------~---~~~~~~ll~~~g  218 (259)
                      ++++.+.+.|+++..    .++     .....+ ..|.++|+.+..     .            +   ...+...|.++|
T Consensus       332 ~~~~~l~~~L~~~~~----~~~-----~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G  401 (453)
T 2cy8_A          332 DLGQFAREAMNHLFA----RKG-----LNWLAY-GRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEG  401 (453)
T ss_dssp             HHHHHHHHHHHHHHH----HTT-----CCEEEE-CCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHh----hCC-----CcEEEE-EeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCC
Confidence            777777777765420    000     011223 346678888764     1            1   233444444689


Q ss_pred             eeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          219 IIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       219 i~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      |.+.|+       +.+|+++..+++++++++++|+++++
T Consensus       402 v~v~~~-------~~~~l~~~~t~~~i~~~l~~l~~~l~  433 (453)
T 2cy8_A          402 VDIGGR-------GSVFLSAQHEREHVEHLVTTFDRVLD  433 (453)
T ss_dssp             EECBTT-------TEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             eEEeCC-------CCEEeeccCCHHHHHHHHHHHHHHHH
Confidence            999652       24788766699999999999998875

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.74  E-value=6.5e-17  Score=138.50  Aligned_cols=229  Identities=14%  Similarity=0.047  Sum_probs=153.5

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~   68 (259)
                      +|+|+.+...++..|.++.       .+.+|+++|++.+++++++|+   |+||||...     .++|+++|+++|+|++
T Consensus        82 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a  158 (367)
T 3nyt_A           82 GFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAA  158 (367)
T ss_dssp             SSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECT
T ss_pred             CCccHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECc
Confidence            4788888888888887652       267789999999988888855   889999765     3899999999999999


Q ss_pred             c-cCCC--CCCCCCCCCCeEEEecc--ccccCCCcceEEEEEecCHHHHHHHHHhhhh------------hcCCCCHHHH
Q 024997           69 Y-FWPH--FAPIPAPADEELMIFTI--SKLTGHAGSRFGWAVIKDEAVYQRMSAYISL------------NTMGVSRECQ  131 (259)
Q Consensus        69 y-~~~~--~~~~~~~~~~~i~~~S~--SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~------------~~~~~~~~~q  131 (259)
                      | ++..  .... ...+ ++++.||  +|.+|.+|. .|+++++++++.+.+......            .+...+++.+
T Consensus       159 ~~~g~~~~~~~~-~~~~-di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~a  235 (367)
T 3nyt_A          159 QSFGASYKGKRS-CNLS-TVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQA  235 (367)
T ss_dssp             TTTTCEETTEET-TSSS-SEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHH
T ss_pred             cccCCeECCeec-cCCC-CEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHH
Confidence            8 2111  1111 1111 6888997  899986576 899998767888888775442            2355667666


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHH
Q 024997          132 LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCY  211 (259)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (259)
                      +++...++         .+++..++.+++.+.+.+.|++++ +.+....+.        .........+.++  +.+.+.
T Consensus       236 a~~~~~l~---------~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~--------~~~~~~~~~~~~~--~~~~l~  295 (367)
T 3nyt_A          236 AILLPKLE---------IFEEEIALRQKVAAEYDLSLKQVG-IGTPFIEVN--------NISVYAQYTVRMD--NRESVQ  295 (367)
T ss_dssp             HHHHHHHH---------THHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCTT--------EECCCSSEEEECS--SHHHHH
T ss_pred             HHHHHHHH---------HHHHHHHHHHHHHHHHHHHhccCC-eeccCCCCC--------CceeeEEEEEEeC--CHHHHH
Confidence            66655555         234456667777788888888764 211100000        0011122334444  456677


Q ss_pred             HHHHHcCeeeecCCccc---------C----------CCCeEEEEeec--ChhhHHHHHHHHHHH
Q 024997          212 GILKAAKIIGREGKKFR---------A----------EARFVRLSLLK--SQDDFDLLLHRLDEL  255 (259)
Q Consensus       212 ~ll~~~gi~~~~g~~f~---------~----------~~~~~Ris~~~--~~~~~~~~~~~l~~~  255 (259)
                      +.|+++||.++++....         .          ..+.+|+++..  ++++++.+++.++++
T Consensus       296 ~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~  360 (367)
T 3nyt_A          296 ASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL  360 (367)
T ss_dssp             HHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred             HHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence            77778899998764311         0          03468999865  899999999998865

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.74  E-value=1.5e-17  Score=147.75  Aligned_cols=234  Identities=10%  Similarity=0.017  Sum_probs=152.0

Q ss_pred             CCCcccchhhhhhccCcc------cccccChhhhcccCCCCc------eEEEEcCCCCCChhhH-----HHhhcCCCcEE
Q 024997            1 MPFYPLYQEQTDYFESVD------YKFEGEANLWGNASSDTH------LVEFVTAPNNPDGQMN-----KAVLKGPYAKS   63 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~------~~~~~d~~~l~~~~~~~~------~~i~i~~p~NPtG~~~-----~~la~~~~~~v   63 (259)
                      +|+|+.+...++..|..+      ..+.+|+++|++.+++++      .++++++|+||||.+-     .++|+++|+++
T Consensus       189 ~~~h~s~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~l  268 (486)
T 1js3_A          189 DQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWL  268 (486)
T ss_dssp             TTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEE
T ss_pred             CCCcHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEE
Confidence            367888888888888765      245789999999985543      4889999999999886     38999999999


Q ss_pred             Eeecccc-----CCCCCCC-CCCCCCeEEEeccccccCCCcceEEEEEecCHHH-HHHHH---Hhhhh------------
Q 024997           64 IYDHAYF-----WPHFAPI-PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAV-YQRMS---AYISL------------  121 (259)
Q Consensus        64 i~De~y~-----~~~~~~~-~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~-~~~~~---~~~~~------------  121 (259)
                      ++|++|-     .+..... .+......+..|++|.++.+ +++|++++.+++. .+.+.   .+...            
T Consensus       269 hvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~  347 (486)
T 1js3_A          269 HVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYR  347 (486)
T ss_dssp             EEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESCHHHHHGGGC------------CCSCCCGG
T ss_pred             EEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-cceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCcc
Confidence            9999991     1222111 12223356678899999855 8899999986553 34331   11100            


Q ss_pred             -----hcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceee-CCCCC
Q 024997          122 -----NTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKI-RPPSP  195 (259)
Q Consensus       122 -----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~  195 (259)
                           .+.....+.++++...+..       +.+.+..++..++++.+.+.|+++++             +... ++..+
T Consensus       348 ~~~~~~~rr~~~~~~~~al~~~g~-------~g~~~~~~~~~~~a~~l~~~L~~~~~-------------~~~~~~~~~~  407 (486)
T 1js3_A          348 HWQLPLGRRFRSLKMWFVFRMYGV-------KGLQAYIRKHVQLSHEFEAFVLQDPR-------------FEVCAEVTLG  407 (486)
T ss_dssp             GSSSCSCCCCTHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHCTT-------------EEECSCCCSS
T ss_pred             ccCCCCCCchhHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHhcCCC-------------eEEeCCCcee
Confidence                 0112234556666555532       35677788889999999999988765             3332 24444


Q ss_pred             eeEEEecCCCc--hHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec---ChhhHHHHHHHHHHHhh
Q 024997          196 AYAWVKCEREE--DKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK---SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       196 ~~~~~~~~~~~--~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~---~~~~~~~~~~~l~~~l~  257 (259)
                      ++.+ .++..+  .+.+.+.|.+.|+.+.++..+. +.+++|++++.   +.+++++++++|+++++
T Consensus       408 ~v~f-~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~  472 (486)
T 1js3_A          408 LVCF-RLKGSDGLNEALLERINSARKIHLVPCRLR-GQFVLRFAICSRKVESGHVRLAWEHIRGLAA  472 (486)
T ss_dssp             EEEE-EESSCHHHHHHHHHHHHHHTSCBCEEEEET-TEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEE-EecChHHHHHHHHHHHHhcCCEEEEEEEEC-CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            4443 444321  2334444445676544433343 35799999853   67899999999988764

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.74  E-value=3.6e-17  Score=145.89  Aligned_cols=236  Identities=9%  Similarity=0.034  Sum_probs=157.3

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCC------CcE
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGP------YAK   62 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~------~~~   62 (259)
                      +|+|+.|...++..|..+.       .+.+|+++|++.+++++++|++++|+||||.+.     .++|+++      |++
T Consensus       161 ~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~  240 (502)
T 3hbx_A          161 ANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP  240 (502)
T ss_dssp             TTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCC
T ss_pred             CCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCe
Confidence            3677888888888887641       267899999999999999999999999999987     3888888      999


Q ss_pred             EEeecccc-------CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhh-hhh-----------c
Q 024997           63 SIYDHAYF-------WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI-SLN-----------T  123 (259)
Q Consensus        63 vi~De~y~-------~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~-~~~-----------~  123 (259)
                      +++|++|-       .+..........-+++..|.+|.++ .+.++||+++.+++.+....... ...           +
T Consensus       241 l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~-~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~s  319 (502)
T 3hbx_A          241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFS  319 (502)
T ss_dssp             EEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCS
T ss_pred             EEEECCccchhhhhhCcccccccCCCCceEEEECcccccC-CCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCC
Confidence            99999992       1111111123345778889999874 66779998876544442211110 100           0


Q ss_pred             -CCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCC-CCCeeEEEe
Q 024997          124 -MGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP-PSPAYAWVK  201 (259)
Q Consensus       124 -~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  201 (259)
                       .+.....|+++...+..       .-+.+..++..++.+++.+.|+++++             +....+ ....++.+.
T Consensus       320 r~~~~~~a~~~al~~lg~-------~g~~~~~~~~~~~a~~l~~~L~~~~~-------------~~~~~~~~~~~~v~f~  379 (502)
T 3hbx_A          320 KGSSQVIAQYYQLIRLGH-------EGYRNVMENCRENMIVLREGLEKTER-------------FNIVSKDEGVPLVAFS  379 (502)
T ss_dssp             CBSHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTTTC-------------EEECSCSSSSSEEEEE
T ss_pred             chHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhCCC-------------EEEEeCCCCceEEEEE
Confidence             01123445555554432       23566778888888999999998765             333333 344456666


Q ss_pred             cCC---CchHHHHHHHHHcCeeeecCCcccC--CCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          202 CER---EEDKDCYGILKAAKIIGREGKKFRA--EARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       202 ~~~---~~~~~~~~ll~~~gi~~~~g~~f~~--~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      ++.   .+...+.+.|.++||.+........  +...+|++++.  +.++++.+++.|+++++
T Consensus       380 ~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~  442 (502)
T 3hbx_A          380 LKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMR  442 (502)
T ss_dssp             ESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            654   2344566667788998864332221  34689999975  88999999999988765

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.74  E-value=2.4e-17  Score=141.36  Aligned_cols=232  Identities=13%  Similarity=0.038  Sum_probs=145.0

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecc
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHA   68 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~   68 (259)
                      +|+|+.+...++..|.++.       .+.+|+++|++.+++++++++   |+||||...     .++|+++|+++|+|++
T Consensus        83 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a  159 (373)
T 3frk_A           83 SNTFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAA  159 (373)
T ss_dssp             TTSCTHHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECT
T ss_pred             CCCcHHHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECC
Confidence            4788888888888887652       356789999999988888866   888999876     3899999999999999


Q ss_pred             ccCCCCCCCCC-CCCCeEEEeccc--cccCCCcceEEEEEecCHHHHHHHHHhhhhh------------cCCCCHHHHHH
Q 024997           69 YFWPHFAPIPA-PADEELMIFTIS--KLTGHAGSRFGWAVIKDEAVYQRMSAYISLN------------TMGVSRECQLR  133 (259)
Q Consensus        69 y~~~~~~~~~~-~~~~~i~~~S~S--K~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~q~~  133 (259)
                      |-......... ..-..+.+.|||  |.++..|. .|+++++++++.+.+.......            ....+.+..++
T Consensus       160 ~~~g~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~-gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~  238 (373)
T 3frk_A          160 QAHGSLYKGMKVGSLGDAAGFSFYPAKNLGSLGD-GGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGF  238 (373)
T ss_dssp             TCTTCEETTEETTSSSSEEEEECCTTSSSCCSSS-CEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHH
T ss_pred             cccCCEECCEeccccccEEEEeCcCCCccCccce-eEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHH
Confidence            82111111100 001257888877  98874353 7999988667888777654421            22235554444


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCee-EEEecCCCchHHHHH
Q 024997          134 AFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAY-AWVKCEREEDKDCYG  212 (259)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  212 (259)
                      ....++         .+++..++.+++.+.+.+.|++++ +.+...++         .....++ +.+...  +.+.+.+
T Consensus       239 ~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~---------~~~~~~~~~~~~~~--~~~~l~~  297 (373)
T 3frk_A          239 LRVKLK---------YLDKWNEERRKIAQKYIAGINNPN-VIIPVEAD---------YAKHVWYTFVIRSE--KRDELQK  297 (373)
T ss_dssp             HHHHHH---------THHHHHHHHHHHHHHHHHHCCCTT-EECCCCCT---------TEECCCSSEEEEES--SHHHHHH
T ss_pred             HHHHHH---------HHHHHHHHHHHHHHHHHHHhccCc-eEeccCCC---------CCceeeEEEEEEeC--CHHHHHH
Confidence            333333         234455666666666666666544 22110000         0011111 122222  4566677


Q ss_pred             HHHHcCeeeecCCcccC----------------------CCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          213 ILKAAKIIGREGKKFRA----------------------EARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       213 ll~~~gi~~~~g~~f~~----------------------~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      .|.++||.++++.....                      ..+.+|+++..  ++++++.+++.|+++..
T Consensus       298 ~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~  366 (373)
T 3frk_A          298 YLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKL  366 (373)
T ss_dssp             HHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC-
T ss_pred             HHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhh
Confidence            77788999987642110                      01579999965  89999999999988654

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.72  E-value=3.1e-17  Score=143.29  Aligned_cols=241  Identities=10%  Similarity=0.037  Sum_probs=146.6

Q ss_pred             CCcccchhhh----hhccCccccc-cc-ChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc-
Q 024997            2 PFYPLYQEQT----DYFESVDYKF-EG-EANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY-   69 (259)
Q Consensus         2 P~y~~~~~~~----~~~g~~~~~~-~~-d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y-   69 (259)
                      |.|+.+...+    +..|.++..+ .. |+++|++.+++++++|++++|+||||.++     .++|+++|+++|+|++| 
T Consensus       105 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~  184 (421)
T 2ctz_A          105 NLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFG  184 (421)
T ss_dssp             CCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGG
T ss_pred             CCchHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcc
Confidence            5666655544    4556665444 33 67889999988999999999999999987     38999999999999999 


Q ss_pred             c-CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecC--HHH----HHHHHH-------------------------
Q 024997           70 F-WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKD--EAV----YQRMSA-------------------------  117 (259)
Q Consensus        70 ~-~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~--~~~----~~~~~~-------------------------  117 (259)
                      - +.....+  ..+.++++.|+||.++.+|.|+|++++.+  .++    .+.+..                         
T Consensus       185 ~~g~~~~~~--~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~  262 (421)
T 2ctz_A          185 MGGYLLRPL--AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARV  262 (421)
T ss_dssp             GGGTSCCGG--GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHH
T ss_pred             cccccCCcc--ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHH
Confidence            3 2111111  22457999999999998999999888751  111    112211                         


Q ss_pred             -hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc-c---ce-eeC
Q 024997          118 -YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCT-Y---FK-KIR  191 (259)
Q Consensus       118 -~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~---~~-~~~  191 (259)
                       .....+...++...+++...++         .+..+.++..++...+.+.|++++++.....+..... .   +. ..+
T Consensus       263 ~~~~~~g~~~~~~~a~~~~~~l~---------~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~  333 (421)
T 2ctz_A          263 DGLRDQGQALGPFEAWVVLLGME---------TLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFK  333 (421)
T ss_dssp             THHHHHCCCCCHHHHHHHHHHHT---------THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHT
T ss_pred             HHHHhcCCCCCHHHHHHHHcCcc---------hHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhcc
Confidence             0111233455654444444443         3445566777899999999998776443221210000 0   00 000


Q ss_pred             CCCCeeEEEecCCCchHHHHHHHHHc---CeeeecCCcc----------------------cCCCCeEEEEeecChhhHH
Q 024997          192 PPSPAYAWVKCEREEDKDCYGILKAA---KIIGREGKKF----------------------RAEARFVRLSLLKSQDDFD  246 (259)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~ll~~~---gi~~~~g~~f----------------------~~~~~~~Ris~~~~~~~~~  246 (259)
                      ...|..+.+.+... .+....++++.   ++.++.|...                      +..++.+|+|++.  ++++
T Consensus       334 ~~~g~ivsf~l~~~-~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~--e~~~  410 (421)
T 2ctz_A          334 GKPGAVLTFGLKGG-YEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL--EHVE  410 (421)
T ss_dssp             TCCCSEEEEEETTH-HHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHH
T ss_pred             CCCceEEEEEeCCC-HHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC--CCHH
Confidence            12344455666542 23444555443   4455555211                      1125899999976  5777


Q ss_pred             HHHHHHHHHh
Q 024997          247 LLLHRLDELI  256 (259)
Q Consensus       247 ~~~~~l~~~l  256 (259)
                      +.++.|.+.+
T Consensus       411 ~li~~l~~al  420 (421)
T 2ctz_A          411 DLKAELKEAL  420 (421)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            7888887765

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.72  E-value=6.2e-17  Score=144.50  Aligned_cols=236  Identities=11%  Similarity=0.015  Sum_probs=153.8

Q ss_pred             CCcccchhhhhhccC---cc------cccccChhhhcccCCC------CceEEEEcCCCCCChhhH-----HHhhcCCCc
Q 024997            2 PFYPLYQEQTDYFES---VD------YKFEGEANLWGNASSD------THLVEFVTAPNNPDGQMN-----KAVLKGPYA   61 (259)
Q Consensus         2 P~y~~~~~~~~~~g~---~~------~~~~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~-----~~la~~~~~   61 (259)
                      +.|+.+...++..|.   .+      ..+.+|+++|++.+++      ++++|++++|+||||.+.     .++|+++|+
T Consensus       197 ~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~  276 (504)
T 2okj_A          197 QSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNL  276 (504)
T ss_dssp             TSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTC
T ss_pred             cchHHHHHHHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCC
Confidence            567777777777664   33      2467889999998844      588999999999999876     489999999


Q ss_pred             EEEeecccc-----CCCC-CCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhh-hhhc-----------
Q 024997           62 KSIYDHAYF-----WPHF-APIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI-SLNT-----------  123 (259)
Q Consensus        62 ~vi~De~y~-----~~~~-~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~-~~~~-----------  123 (259)
                      ++++|++|-     .+.+ ..+.+....++++.|++|.++.+ .++|++++.++++.+...... ....           
T Consensus       277 ~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (504)
T 2okj_A          277 WLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYD  355 (504)
T ss_dssp             EEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGC
T ss_pred             EEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcCCCccccCCcccccCcCC
Confidence            999999992     1211 12222234468888999999854 689999998545655432211 1110           


Q ss_pred             ---------CCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceee---C
Q 024997          124 ---------MGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKI---R  191 (259)
Q Consensus       124 ---------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~  191 (259)
                               .....+.++++.+.+..       ..+.+..++..++++++.+.|++++++             ...   .
T Consensus       356 ~~~~~~~~~rr~~~l~~~a~l~~lg~-------~g~~~~~~~~~~~a~~l~~~L~~~~~~-------------~~~~~~~  415 (504)
T 2okj_A          356 TGDKAIQCGRHVDIFKFWLMWKAKGT-------VGFENQINKCLELAEYLYAKIKNREEF-------------EMVFNGE  415 (504)
T ss_dssp             CGGGSSCSSCBCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTTCTTE-------------EESSSSC
T ss_pred             cccCCCCCCCCccHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHhcCCCE-------------EEEecCC
Confidence                     01135666666666542       346677888889999999999876543             222   2


Q ss_pred             CCCCeeEEEecCCC----------------chHHHHHHHHHcCeeeecCCcccCCCCeEEEEee---cChhhHHHHHHHH
Q 024997          192 PPSPAYAWVKCERE----------------EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL---KSQDDFDLLLHRL  252 (259)
Q Consensus       192 ~~~~~~~~~~~~~~----------------~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~---~~~~~~~~~~~~l  252 (259)
                      |..+++.+...+..                ....+.+.|.+.|+.+..+..+....+++|++++   .+.++++.++++|
T Consensus       416 p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l  495 (504)
T 2okj_A          416 PEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEI  495 (504)
T ss_dssp             CSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHH
T ss_pred             CCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHH
Confidence            55566555443320                0123444455667544433333322368999997   3889999999999


Q ss_pred             HHHhhh
Q 024997          253 DELISK  258 (259)
Q Consensus       253 ~~~l~~  258 (259)
                      ++++++
T Consensus       496 ~~~~~~  501 (504)
T 2okj_A          496 ERLGQD  501 (504)
T ss_dssp             HHHHTC
T ss_pred             HHHHHH
Confidence            988753

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.72  E-value=2e-17  Score=146.05  Aligned_cols=210  Identities=15%  Similarity=0.051  Sum_probs=131.3

Q ss_pred             cccChhhhcccCC----CCceEEEEcCCCCCC-hhhH--------HHhhcCCCcEEEeeccc-c-----------CCCCC
Q 024997           21 FEGEANLWGNASS----DTHLVEFVTAPNNPD-GQMN--------KAVLKGPYAKSIYDHAY-F-----------WPHFA   75 (259)
Q Consensus        21 ~~~d~~~l~~~~~----~~~~~i~i~~p~NPt-G~~~--------~~la~~~~~~vi~De~y-~-----------~~~~~   75 (259)
                      +.+|+++|++.++    +++++|++++||||+ |.++        .++|+++|+++|+|+++ +           .....
T Consensus       165 ~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~  244 (467)
T 2oqx_A          165 GNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW  244 (467)
T ss_dssp             TCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTS
T ss_pred             CCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCc
Confidence            3578899999885    478999999999998 6654        38999999999999433 1           00111


Q ss_pred             CCCCC-----CCCeEEEeccccccCCC-cceEEEEEecCHH-HHH---HHHHhhhhh----cCC-CCHHHHHHHHHHHHH
Q 024997           76 PIPAP-----ADEELMIFTISKLTGHA-GSRFGWAVIKDEA-VYQ---RMSAYISLN----TMG-VSRECQLRAFKLLKV  140 (259)
Q Consensus        76 ~~~~~-----~~~~i~~~S~SK~~g~~-G~R~G~i~~~~~~-~~~---~~~~~~~~~----~~~-~~~~~q~~~~~~l~~  140 (259)
                      +....     ....+++.|+||.+|++ |   ||+++++ + +++   .++......    ..+ .+.....+....++.
T Consensus       245 ~~~~~~~~~~~~~d~~~~s~sK~~g~~~G---g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~  320 (467)
T 2oqx_A          245 TIEQITRETYKYADMLAMSAKKDAMVPMG---GLLCMKD-DSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYD  320 (467)
T ss_dssp             CHHHHHHHHGGGCSEEEEESSSTTCCSSC---EEEEECS-GGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHH
T ss_pred             cHHHHhhhhhccCCeEEEecccccCCCCc---eEEEecC-hhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHh
Confidence            11000     11235688999999877 6   8888885 5 444   343332111    011 122211111122221


Q ss_pred             HHhcCCcchH-HHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC----Cc-hHH-----
Q 024997          141 VLEDGGNNIF-EFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER----EE-DKD-----  209 (259)
Q Consensus       141 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~-----  209 (259)
                              ++ ++..+...++.+.+.+.|++++              +... +.+++++|++++.    .+ .++     
T Consensus       321 --------~~~~~~~~~~~~~~~~l~~~L~~~~--------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l  377 (467)
T 2oqx_A          321 --------GMNLDWLAYRIAQVQYLVDGLEEIG--------------VVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQAL  377 (467)
T ss_dssp             --------TTCHHHHHHHHHHHHHHHHHHHHTT--------------CCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHH
T ss_pred             --------hhhHHHHHHHHHHHHHHHHHHHHCC--------------Ceee-cCCceEEEEechhhcccCCcccccHHHH
Confidence                    12 1234556677888888888652              3344 5678889998742    22 222     


Q ss_pred             HHHHHHHcCeeeecCCcc--cC----------CCCeEEEEee---cChhhHHHHHHHHHHHhh
Q 024997          210 CYGILKAAKIIGREGKKF--RA----------EARFVRLSLL---KSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       210 ~~~ll~~~gi~~~~g~~f--~~----------~~~~~Ris~~---~~~~~~~~~~~~l~~~l~  257 (259)
                      ...++.++||.+.|+..|  +.          +.+++|++++   .+++++++++++|+++++
T Consensus       378 ~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~  440 (467)
T 2oqx_A          378 ACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE  440 (467)
T ss_dssp             HHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence            445547889999995543  11          1379999997   678999999999998875

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.72  E-value=3e-17  Score=144.52  Aligned_cols=200  Identities=13%  Similarity=0.009  Sum_probs=132.0

Q ss_pred             hcccCC---CCceEEEEcCCCCCChh-hH--------HHhhcCCCcEEEeeccc--cCCCCC--CCC--CCCCCeEEEec
Q 024997           28 WGNASS---DTHLVEFVTAPNNPDGQ-MN--------KAVLKGPYAKSIYDHAY--FWPHFA--PIP--APADEELMIFT   89 (259)
Q Consensus        28 l~~~~~---~~~~~i~i~~p~NPtG~-~~--------~~la~~~~~~vi~De~y--~~~~~~--~~~--~~~~~~i~~~S   89 (259)
                      |++.++   +++++|+++.++||||. ++        .++|+++|+++|+||+|  |+....  ...  +....   +.|
T Consensus       221 le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~d---i~t  297 (449)
T 2cjg_A          221 ARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPD---IVA  297 (449)
T ss_dssp             HHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCS---EEE
T ss_pred             HHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCce---EEE
Confidence            777773   56777454444689995 43        38999999999999999  321111  111  22222   348


Q ss_pred             cccccCCCcceEEEEEecCHHHHHHHH-----HhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 024997           90 ISKLTGHAGSRFGWAVIKDEAVYQRMS-----AYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENL  164 (259)
Q Consensus        90 ~SK~~g~~G~R~G~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (259)
                      +||.+     |+||++++ +++++.+.     ......+++.+++.|.++.++++...+       +...++++++++.+
T Consensus       298 ~sK~l-----~iG~~~~~-~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~-------~~~~~~~~~~~~~l  364 (449)
T 2cjg_A          298 FGKKT-----QVCGVMAG-RRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEA-------EGLFERAVQHGKYL  364 (449)
T ss_dssp             ECGGG-----SSEEEEEC-GGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHH-------HTHHHHHHHHHHHH
T ss_pred             ecCcc-----cEEEEEEC-HHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHH
Confidence            99988     78999999 58887522     222335678899999999988874311       23466778888888


Q ss_pred             HHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--c
Q 024997          165 SKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--K  240 (259)
Q Consensus       165 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~  240 (259)
                      .+.|+++..    .++.    .+....+. |.+++++++..  ..++...++ ++||.++|+     +.+++|+++.  .
T Consensus       365 ~~~L~~l~~----~~~~----~~~~~~~~-g~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~-----g~~~iRi~~~~~~  429 (449)
T 2cjg_A          365 RARLDELAA----DFPA----VVLDPRGR-GLMCAFSLPTTADRDELIRQLW-QRAVIVLPA-----GADTVRFRPPLTV  429 (449)
T ss_dssp             HHHHHHHHH----HSTT----TSEEEEEE-TTEEEEECSSHHHHHHHHHHHH-HTTEECEEE-----TTTEEEECCCTTC
T ss_pred             HHHHHHHHh----hCCC----ceeeEeec-cEEEEEEECChHHHHHHHHHHH-HCCeEEecC-----CCCEEEEECCCCC
Confidence            888876420    0000    02223344 45556788653  234555555 689999985     2589999764  4


Q ss_pred             ChhhHHHHHHHHHHHhhh
Q 024997          241 SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       241 ~~~~~~~~~~~l~~~l~~  258 (259)
                      +++++++++++|++++++
T Consensus       430 t~e~i~~~l~~l~~~l~~  447 (449)
T 2cjg_A          430 STAEIDAAIAAVRSALPV  447 (449)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999999998764

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.71  E-value=1.1e-16  Score=137.87  Aligned_cols=217  Identities=11%  Similarity=0.049  Sum_probs=145.2

Q ss_pred             ccChhhhcccCC-CCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEeeccccCCCCCCCC-CCCCCeEEEeccc
Q 024997           22 EGEANLWGNASS-DTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIYDHAYFWPHFAPIP-APADEELMIFTIS   91 (259)
Q Consensus        22 ~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~De~y~~~~~~~~~-~~~~~~i~~~S~S   91 (259)
                      .+|+++|++.+. ++++++++++++||||.+++        ++|+++|+++|+|+++-  ....+. ...+.++++.|++
T Consensus       121 ~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~--g~~~~~~~~~~~d~~~~s~~  198 (379)
T 3ke3_A          121 PVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS--GCVWLDMKELGIDVLISAPQ  198 (379)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC--TTCCCCHHHHTCSEEEECTT
T ss_pred             CCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc--CCccccccccCCCEEEecch
Confidence            378888998884 47888899999999999862        78999999999999873  111221 1224678999999


Q ss_pred             cccCCCcceEEEEEecCHHHHHHHHHhhh------------------h----hcCCCCHHHHHHHHHHHHHHHhcCCcch
Q 024997           92 KLTGHAGSRFGWAVIKDEAVYQRMSAYIS------------------L----NTMGVSRECQLRAFKLLKVVLEDGGNNI  149 (259)
Q Consensus        92 K~~g~~G~R~G~i~~~~~~~~~~~~~~~~------------------~----~~~~~~~~~q~~~~~~l~~~~~~~~~~~  149 (259)
                      |.++ .+..+|+++++ +++++.+.....                  .    ....++...++++.++++...+    .-
T Consensus       199 K~l~-~~~g~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~----~g  272 (379)
T 3ke3_A          199 KGWS-STPCAGLVMLS-AAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKE----IG  272 (379)
T ss_dssp             TTTC-SCCCEEEEEEC-HHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHH----HC
T ss_pred             hhcC-CCCceEEEEEC-HHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHH----hc
Confidence            9885 23348999999 698887764110                  0    1124566666666666664311    11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccC
Q 024997          150 FEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRA  229 (259)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~  229 (259)
                      +++..++++++.+.+.+.|++++ +.+.  .+        .....+....+..+..+.. ....|.++||.+.+|..+..
T Consensus       273 ~~~~~~~~~~l~~~l~~~l~~~g-~~~~--~~--------~~~~~~~i~~~~~~~~~~~-~~~~L~~~Gi~v~~g~~~~~  340 (379)
T 3ke3_A          273 FDILRDAQWELGNRVRKVLTDKG-IESV--AA--------EGFEAPGVVVSYTERDDMH-KGSAFAEAGLQIAAGVPLKV  340 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT-CCBS--BC--------TTCBCSSEEEEECSCHHHH-SSHHHHHTTCCCEECCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC-CEec--CC--------ccccCceEEEEccCCcchH-HHHHHHHCCeEEeCCccccc
Confidence            56677888889999999998764 2211  10        0011222333333322111 24556788999999986542


Q ss_pred             ----CCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          230 ----EARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       230 ----~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                          +.+.+|+|+..  +++++++++++|++++++
T Consensus       341 ~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~  375 (379)
T 3ke3_A          341 GEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDE  375 (379)
T ss_dssp             CCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHH
T ss_pred             cccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHH
Confidence                25799999864  889999999999988753

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.70  E-value=1.1e-16  Score=140.89  Aligned_cols=220  Identities=13%  Similarity=-0.008  Sum_probs=128.8

Q ss_pred             CCCcccchhhhhhccCcccc------------cccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEE
Q 024997            1 MPFYPLYQEQTDYFESVDYK------------FEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKS   63 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~------------~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~v   63 (259)
                      +|+|+.+...+...|.++..            +.+|+++|   +.++++++++++ +|+||.++     .++|+++|+++
T Consensus       103 ~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~l  178 (446)
T 2x3l_A          103 RNVHKSVLHALDISQQEGHFIETHQSPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPV  178 (446)
T ss_dssp             TTCCHHHHHHHHHHTCCEEECEEEECTTTSSEEEEEC----------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCE
T ss_pred             cCccHHHHHHHHHcCCeEEEEeCeeccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeE
Confidence            47888888888888876532            23455555   456788989998 56699987     38999999999


Q ss_pred             Eeecccc-----CCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHH--HHHHhhhhhc-CCCCHHHHHHH
Q 024997           64 IYDHAYF-----WPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQ--RMSAYISLNT-MGVSRECQLRA  134 (259)
Q Consensus        64 i~De~y~-----~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~--~~~~~~~~~~-~~~~~~~q~~~  134 (259)
                      |+||+|.     .+.  +.. ...+..+++.|+||.++ .+.++||+++++ ++++  .+........ ..++.....++
T Consensus       179 ivDea~~~~~~f~~~--~~~~~~~g~Di~~~S~~K~l~-~~~g~g~l~~~~-~~i~~~~~~~~~~~~~~~s~~~~~~aal  254 (446)
T 2x3l_A          179 LIDEAHGAHFGLQGF--PDSTLNYQADYVVQSFHKTLP-ALTMGSVLYIHK-NAPYRENIIEYLSYFQTSSPSYLIMASL  254 (446)
T ss_dssp             EEECTTCTTTTSTTS--CCCGGGGTCSEEEECHHHHSS-SCTTCEEEEEET-TCTTHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred             EEcchhhhhhccCCC--CCChHHcCCCEEEECCccccc-cccccEEEEEcC-CcCCHHHHHHHHHHHcCCCchHHHHHHH
Confidence            9999982     111  121 11234699999999653 233479999984 6544  3333222222 33333333322


Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHH
Q 024997          135 FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGIL  214 (259)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  214 (259)
                      ..+++...+ ...   ++..++.++..+.+.+.     +             +....+..+.++|++++..+...+.+.|
T Consensus       255 ~~a~~~l~~-~g~---~~~~~~~~~l~~~l~~~-----g-------------~~~~~~~~~~~l~i~~~~~~~~~l~~~L  312 (446)
T 2x3l_A          255 ESAAQFYKT-YDS---TLFFAKRAQLIECLENK-----G-------------FEMLQVDDPLKLLIKYEGFTGHDIQNWF  312 (446)
T ss_dssp             HHHHHHHHH-CCC---HHHHHHHHHHHHHHHHH-----T-------------CEEEECSSTTEEEEECTTSCHHHHHHHH
T ss_pred             HHHHHHHHH-hCH---HHHHHHHHHHHHHHHHc-----C-------------CEECcCCCCeEEEEEeCCcCHHHHHHHH
Confidence            223332110 011   11233333333333332     1             3333444556789988754555555666


Q ss_pred             HHcCeeee-cCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          215 KAAKIIGR-EGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       215 ~~~gi~~~-~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      .++||.++ +|      .+++|++++.  +++++ .++++|+++++
T Consensus       313 ~~~GI~v~~~g------~~~iRi~~~~~~t~e~i-~l~~aL~~~~~  351 (446)
T 2x3l_A          313 MNAHIYLELAD------DYQALAILPLWHHDDTY-LFDSLLRKIED  351 (446)
T ss_dssp             HHTTEEESEEC------SSCEEEECCCCCTTCCC-CHHHHHHHHHT
T ss_pred             HHCCCEEEecC------CCEEEEEeecCCCHHHH-HHHHHHHHHHH
Confidence            66799997 42      3689999975  78889 99999988765

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.68  E-value=1.7e-16  Score=141.47  Aligned_cols=234  Identities=11%  Similarity=0.073  Sum_probs=146.2

Q ss_pred             CCcccchhhhhhccC---cc------cccccChhhhcccCCC----C--ceEEEEcCCCCCChhhH-----HHhhcCCCc
Q 024997            2 PFYPLYQEQTDYFES---VD------YKFEGEANLWGNASSD----T--HLVEFVTAPNNPDGQMN-----KAVLKGPYA   61 (259)
Q Consensus         2 P~y~~~~~~~~~~g~---~~------~~~~~d~~~l~~~~~~----~--~~~i~i~~p~NPtG~~~-----~~la~~~~~   61 (259)
                      +.|+.+...++..|.   .+      ..+.+|+++|++.+.+    .  +.++++++|+||||.+.     .++|+++|+
T Consensus       210 ~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~  289 (497)
T 2qma_A          210 KSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDM  289 (497)
T ss_dssp             TSCTHHHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTC
T ss_pred             CchHHHHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            455666666666654   22      2356789999988843    2  34788899999999976     389999999


Q ss_pred             EEEeecccc--C--CCCCC-CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCC----C------
Q 024997           62 KSIYDHAYF--W--PHFAP-IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMG----V------  126 (259)
Q Consensus        62 ~vi~De~y~--~--~~~~~-~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~----~------  126 (259)
                      ++++|++|-  .  ..+.. +.+....++++.|++|.++.+ .++|++++.++..++.+.....+....    +      
T Consensus       290 ~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p-~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~  368 (497)
T 2qma_A          290 WMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQT-ISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKS  368 (497)
T ss_dssp             EEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCC-SSCEEEEESCGGGGGGGCC-------------------
T ss_pred             EEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCC-cceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccC
Confidence            999999992  1  11111 112224467888999988755 689999987544343332111010000    0      


Q ss_pred             -------CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceee-CCCCCeeE
Q 024997          127 -------SRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKI-RPPSPAYA  198 (259)
Q Consensus       127 -------~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  198 (259)
                             ..+.++++...+       ....+.+..++..++++.+.+.|+++++             +... ++..+ ++
T Consensus       369 ~~~~r~~~al~~~~~l~~l-------g~~g~~~~~~~~~~~a~~l~~~L~~~~~-------------~~~~~~~~~~-~v  427 (497)
T 2qma_A          369 IATTKRFDALKVFMTMQNV-------GPKALGDMYDHLLAQTLEVADMIRTNDQ-------------FELLAEPSLS-TV  427 (497)
T ss_dssp             -CCSCCCTHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHHHHHHHTCTT-------------EEECSCCSSS-EE
T ss_pred             CCCCCchhHHHHHHHHHHh-------CHHHHHHHHHHHHHHHHHHHHHHhhCCC-------------eEEEcCCCce-EE
Confidence                   112233333332       2345667788888999999999987654             3332 34444 45


Q ss_pred             EEecCCCc------hHHHHHHHHHcCeeeecCCcccCCCCeEEEEee---cChhhHHHHHHHHHHHhhh
Q 024997          199 WVKCEREE------DKDCYGILKAAKIIGREGKKFRAEARFVRLSLL---KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       199 ~~~~~~~~------~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~---~~~~~~~~~~~~l~~~l~~  258 (259)
                      ++.+....      .+.+.+.+.+.|+.+.++..+. +.+++|+++.   .++++++.++++|++++++
T Consensus       428 ~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~-g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~  495 (497)
T 2qma_A          428 LFRATHETADLDELNKALRLEALTRGIAVLGETIVD-GKTALKFTILNPCLTTSDFESLLSKINMLAVE  495 (497)
T ss_dssp             EEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEET-TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEEC-CEEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            55554321      1233344556799887755443 3468999983   2899999999999988753

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.51  E-value=2.2e-18  Score=151.73  Aligned_cols=208  Identities=12%  Similarity=0.046  Sum_probs=137.5

Q ss_pred             cChhhhcccCC---CCceEEEEcCCCCCChhhHH---------HhhcCCCcEEEeeccccCCCCCCC-C-CCCCCeEEEe
Q 024997           23 GEANLWGNASS---DTHLVEFVTAPNNPDGQMNK---------AVLKGPYAKSIYDHAYFWPHFAPI-P-APADEELMIF   88 (259)
Q Consensus        23 ~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~~---------~la~~~~~~vi~De~y~~~~~~~~-~-~~~~~~i~~~   88 (259)
                      .|++.|++.++   +++++|++...+|++|.+.+         ++|+++|+++|+||+|- -..... . +..+....+.
T Consensus       218 ~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~  296 (465)
T 2yky_A          218 NDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLT  296 (465)
Confidence            46788888886   57778555444667997652         89999999999999992 110001 0 1122233466


Q ss_pred             ccccccCCCcceEEEEEecCHHHHHHHHH-----hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 024997           89 TISKLTGHAGSRFGWAVIKDEAVYQRMSA-----YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWEN  163 (259)
Q Consensus        89 S~SK~~g~~G~R~G~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (259)
                      ||||.+| .|+|+||++++ +++++.+..     .....+++.+++.|+++.+.|+...   .    +...++++++.++
T Consensus       297 t~sK~lg-~G~piG~v~~~-~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~---~----~~~~~~~~~~~~~  367 (465)
T 2yky_A          297 TLGKYIG-GGMSFGAFGGR-RDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIY---T----RQAASDLSASGDR  367 (465)
Confidence            9999998 59999999999 699998876     2344667889999999988887431   1    1245666667777


Q ss_pred             HHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-C--------------chHHHHHHHHHcCeeeecCCccc
Q 024997          164 LSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-E--------------EDKDCYGILKAAKIIGREGKKFR  228 (259)
Q Consensus       164 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------~~~~~~~ll~~~gi~~~~g~~f~  228 (259)
                      +.+.|+++..    ..+      +....+..|.++|+.+.. .              ..+++..++ ++||.+.|+. |.
T Consensus       368 l~~~L~~~~~----~~~------~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll-~~GV~v~p~~-~~  435 (465)
T 2yky_A          368 FRANLNRIAV----ENQ------APLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHML-RKGIYLAPRG-MY  435 (465)
Confidence            7766665421    000      111133456666766543 0              123444555 6899999865 32


Q ss_pred             CCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          229 AEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       229 ~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                         .   +++..+++++++++++|.+++++
T Consensus       436 ---~---~s~~~t~edid~~l~~l~~~l~~  459 (465)
T 2yky_A          436 ---A---LSLEIADAGRDAFAEALADFIGE  459 (465)
Confidence               1   77767999999999999988753

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.68  E-value=1.2e-15  Score=131.84  Aligned_cols=232  Identities=13%  Similarity=0.029  Sum_probs=144.9

Q ss_pred             CCCcccchhhhhhccCccc------ccccChhhhcccCCC---CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEee
Q 024997            1 MPFYPLYQEQTDYFESVDY------KFEGEANLWGNASSD---THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYD   66 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~---~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~D   66 (259)
                      +|+|+.+...++..|.++.      .+.+|+++|++.+++   +++++++++   |||...     .++|+++|+++|+|
T Consensus        79 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~D  155 (394)
T 1o69_A           79 SFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIED  155 (394)
T ss_dssp             SSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             CCccHHHHHHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEE
Confidence            5899999999988887652      346788889888854   688888875   888765     38899999999999


Q ss_pred             cccc-CC--CCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCC--------------CCHH
Q 024997           67 HAYF-WP--HFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMG--------------VSRE  129 (259)
Q Consensus        67 e~y~-~~--~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~--------------~~~~  129 (259)
                      ++|. +-  .........  .+.+.|+||..+++|.|+||++++++++++.+.........+              .+++
T Consensus       156 ea~~~g~~~~~~~~~~~~--~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  233 (394)
T 1o69_A          156 AAEALGSFYKNKALGTFG--EFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNV  233 (394)
T ss_dssp             CTTCTTCEETTEETTSSS--SEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHH
T ss_pred             CcCcccceeCCccccccc--CcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHH
Confidence            9992 21  111111112  255566643334457799999996468888887754322111              2333


Q ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCC-CCCe-eEEEecCC---
Q 024997          130 CQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP-PSPA-YAWVKCER---  204 (259)
Q Consensus       130 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~---  204 (259)
                      ...++...+         +++++..++++++++.+.+.|+++  +.+  .++        ... ..++ .+++.++.   
T Consensus       234 ~aa~~l~~l---------~~l~~~~~~~~~~~~~l~~~L~~~--~~~--~~~--------~~~~~~~~~~~~i~~~~~~~  292 (394)
T 1o69_A          234 LGAIGVAQM---------EVLEQRVLKKREIYEWYKEFLGEY--FSF--LDE--------LENSRSNRWLSTALINFDKN  292 (394)
T ss_dssp             HHHHHHHHH---------TTHHHHHHHHHHHHHHHHHHHTTT--EEC--CCC--------CTTEECCCSSEEEEESCCGG
T ss_pred             HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhccc--ccc--cCC--------CCCCcceeEEEEEEecchhh
Confidence            333222222         246667888889999998888764  111  111        000 1222 34555552   


Q ss_pred             -------------------CchHHHHHHHHHcCeeeecCCcc---cC--CC--------------CeEEEEeec--Chhh
Q 024997          205 -------------------EEDKDCYGILKAAKIIGREGKKF---RA--EA--------------RFVRLSLLK--SQDD  244 (259)
Q Consensus       205 -------------------~~~~~~~~ll~~~gi~~~~g~~f---~~--~~--------------~~~Ris~~~--~~~~  244 (259)
                                         .+.+.+.+.|.++||.+++|...   .+  ..              +.+|+....  ++++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ed  372 (394)
T 1o69_A          293 ELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDD  372 (394)
T ss_dssp             GSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHH
T ss_pred             ccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHH
Confidence                               13455666677899999998432   11  00              234444433  8999


Q ss_pred             HHHHHHHHHHHhhh
Q 024997          245 FDLLLHRLDELISK  258 (259)
Q Consensus       245 ~~~~~~~l~~~l~~  258 (259)
                      ++.+++.|+++++.
T Consensus       373 i~~~~~~l~~~~~~  386 (394)
T 1o69_A          373 VYEISKLILKSIKA  386 (394)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988764

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.68  E-value=6.8e-16  Score=135.35  Aligned_cols=226  Identities=12%  Similarity=0.109  Sum_probs=138.2

Q ss_pred             CCCcccchhhhh----hccCcccc-----cccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEee
Q 024997            1 MPFYPLYQEQTD----YFESVDYK-----FEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYD   66 (259)
Q Consensus         1 ~P~y~~~~~~~~----~~g~~~~~-----~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~D   66 (259)
                      +|+|+.|...++    ..|.++..     +.+|+++    +++++++|++++| ||||.+.     .++|+++|+++++|
T Consensus       157 ~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd  231 (438)
T 1wyu_A          157 QGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAV  231 (438)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEE
T ss_pred             CccCHhHHHHHHHHHHHCCCEEEEEcCcCCccCHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEE
Confidence            467887776553    35765532     2344433    6778999999999 9999987     38899999999966


Q ss_pred             c--cccCCCCCCCCCCCCCeEEEeccccccC----CCcceEEEEEecCHHHHHHHHHh----------------------
Q 024997           67 H--AYFWPHFAPIPAPADEELMIFTISKLTG----HAGSRFGWAVIKDEAVYQRMSAY----------------------  118 (259)
Q Consensus        67 e--~y~~~~~~~~~~~~~~~i~~~S~SK~~g----~~G~R~G~i~~~~~~~~~~~~~~----------------------  118 (259)
                      -  ..|+..  ..++..+..++++| +|.||    +.|.|+||++++ +++++.+...                      
T Consensus       232 ~d~~a~g~~--~~~~~~g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~  307 (438)
T 1wyu_A          232 ADPLSLGVL--KPPGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATK-KAFVRQLPGRLVSETVDVEGRRGFILTLQARE  307 (438)
T ss_dssp             CCTTGGGTB--CCHHHHTCSEEEEE-CTTTTCCCGGGCSCCEEEEEC-GGGGGGCCSCCEEEEEBTTSCEEEEECCGGGS
T ss_pred             echhhccCc--CCCccCCCCEEEEC-CcccCCCccCCCCCeeEEEEc-HHHHHhCCCceeccccccCCCcceeeeccccc
Confidence            2  212211  11122234567777 66654    456789999999 5776654211                      


Q ss_pred             ----hhhhcCCC---CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeC
Q 024997          119 ----ISLNTMGV---SRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIR  191 (259)
Q Consensus       119 ----~~~~~~~~---~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  191 (259)
                          ....+.++   +......+...+...    ....+.+..+++.++++++.+.|++++++             ....
T Consensus       308 ~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~----~~~g~~~~~~~~~~~~~~l~~~L~~~~g~-------------~~~~  370 (438)
T 1wyu_A          308 QYIRRAKAKSNITTNAQLTALMGAMYLAAL----GPEGLREVALKSVEMAHKLHALLLEVPGV-------------RPFT  370 (438)
T ss_dssp             HHHHGGGSSCCCCSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTTSTTC-------------EECS
T ss_pred             cccchhcccCCccchHHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHHHHHHhcCCCe-------------EECC
Confidence                00112222   222222122123321    12236677888889999999999877542             2222


Q ss_pred             CCCCeeE--EEecCCCchHHHHHHHHHcCeee--ecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHh
Q 024997          192 PPSPAYA--WVKCEREEDKDCYGILKAAKIIG--REGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       192 ~~~~~~~--~~~~~~~~~~~~~~ll~~~gi~~--~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l  256 (259)
                      +. +++.  .+..+. +...+.+.|.++||.+  +++..|+  ++++|+|+..  +++++++++++|++++
T Consensus       371 ~~-~~~~~~~~~~~~-~~~~~~~~L~~~gi~v~~~~~~~~~--~~~lRis~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          371 PK-PFFNEFALALPK-DPEAVRRALAERGFHGATPVPREYG--ENLALFAATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             CS-SBCSEEEEECSS-CHHHHHHHHHHTTCCCCEECCTTSC--SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             CC-CeEEEEEEeCCC-CHHHHHHHHHHCCceeccccccccC--CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence            22 2332  233332 3344444455679999  6777665  5899999974  8899999999998875

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.66  E-value=5.6e-15  Score=130.81  Aligned_cols=214  Identities=13%  Similarity=0.048  Sum_probs=145.5

Q ss_pred             cccChhhhcccCC-CCceEEEEcCCCCCChhhH---HHhhcCCCcEEEeecccc-----CCC-CCCCCCCCCCeEEEecc
Q 024997           21 FEGEANLWGNASS-DTHLVEFVTAPNNPDGQMN---KAVLKGPYAKSIYDHAYF-----WPH-FAPIPAPADEELMIFTI   90 (259)
Q Consensus        21 ~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~---~~la~~~~~~vi~De~y~-----~~~-~~~~~~~~~~~i~~~S~   90 (259)
                      +.+|+++|++.+. .++++|++++|+||+..-+   .++|+++|+++++|++++     .+. ..++   ....+++.|+
T Consensus       188 ~~iD~d~le~~l~~~~~klIi~~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~---~~aDiv~~S~  264 (490)
T 2a7v_A          188 GLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF---KHADIVTTTT  264 (490)
T ss_dssp             CSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG---GTCSEEEEES
T ss_pred             CCcCHHHHHHHHhhcCCcEEEEcCCCCCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCC---CCCCEEEECC
Confidence            5788999999884 4788888899999986444   489999999999999973     111 1122   1346899999


Q ss_pred             ccccCCCcceEEEEEecCH--------------HHHHHHHHhhhhhcCC-CCHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q 024997           91 SKLTGHAGSRFGWAVIKDE--------------AVYQRMSAYISLNTMG-VSRECQLRAFKLLKVVLEDGGNNIFEFGYN  155 (259)
Q Consensus        91 SK~~g~~G~R~G~i~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~  155 (259)
                      ||.++  |.|.|++++++.              ++.+.++........+ ++.....+...++...    ......+..+
T Consensus       265 hK~l~--Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~----~~~~~~~~~~  338 (490)
T 2a7v_A          265 HKTLR--GARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQA----CTPMFREYSL  338 (490)
T ss_dssp             SGGGC--SCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH----HSHHHHHHHH
T ss_pred             cccCc--cccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHH----hhhhHHHHHH
Confidence            99984  566799999842              2556666554433333 3333333334344432    1123466788


Q ss_pred             HHHHHHHHHHHHHHhcCCCccccccccccccceeeC-CCCCeeEEEecCCC--chHHHHHHHHHcCeeeecCCccc----
Q 024997          156 TMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIR-PPSPAYAWVKCERE--EDKDCYGILKAAKIIGREGKKFR----  228 (259)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~g~~f~----  228 (259)
                      ++.++++.+.+.|++.+              +.... ......+|+++...  +.+.+.+.|++.||.+..+..++    
T Consensus       339 ~~~~na~~L~~~L~~~G--------------~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p  404 (490)
T 2a7v_A          339 QVLKNARAMADALLERG--------------YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSA  404 (490)
T ss_dssp             HHHHHHHHHHHHHHHTT--------------CEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCS
T ss_pred             HHHHHHHHHHHHHHHcC--------------cEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCCCC
Confidence            89999999999998764              22222 23356788887643  46778888889999998653333    


Q ss_pred             CCCCeEEEEe------ecChhhHHHHHHHHHHHhh
Q 024997          229 AEARFVRLSL------LKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       229 ~~~~~~Ris~------~~~~~~~~~~~~~l~~~l~  257 (259)
                      ..+..+||+.      +.++++++++.+.|.++++
T Consensus       405 ~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~  439 (490)
T 2a7v_A          405 ITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             SSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEecccccccCCCCHHHHHHHHHHHHHHHH
Confidence            1357899976      2378899999998888764

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.66  E-value=6.6e-16  Score=132.94  Aligned_cols=234  Identities=14%  Similarity=0.081  Sum_probs=152.5

Q ss_pred             CCCcccchhhhhhccCcc-------cccccChhhhcccC-CCC--ceEEEEcCCCCCChhhH-----HHhhcCCCcEEEe
Q 024997            1 MPFYPLYQEQTDYFESVD-------YKFEGEANLWGNAS-SDT--HLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIY   65 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~-------~~~~~d~~~l~~~~-~~~--~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~   65 (259)
                      +|+|+.+...++..|.++       ..|.+|+++|++.+ +++  +++|+   |+||+|...     .++|+ +|+++|+
T Consensus        85 ~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~  160 (377)
T 3ju7_A           85 SFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVV  160 (377)
T ss_dssp             SSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEE
T ss_pred             CCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEE
Confidence            478999998888888865       24678899999987 556  88855   788999876     38899 9999999


Q ss_pred             eccc-cCCC--CCCCCCCCCCeEEEecc--ccccCCCcceEEEEEecCHHHHHHHHHhhhhh------------cCCCCH
Q 024997           66 DHAY-FWPH--FAPIPAPADEELMIFTI--SKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN------------TMGVSR  128 (259)
Q Consensus        66 De~y-~~~~--~~~~~~~~~~~i~~~S~--SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~------------~~~~~~  128 (259)
                      |++| ++..  ...+ +..-..+.+.||  +|.++. | +.|+++++++++.+.++......            ....+.
T Consensus       161 D~a~a~g~~~~~~~~-g~~~~d~~~~S~~~~K~l~~-g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~  237 (377)
T 3ju7_A          161 DAAPGFGLMNGGMHY-GQDFSGMIIYSFHATKPFGI-G-EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSE  237 (377)
T ss_dssp             ECTTCTTCEETTEET-TTTCSSEEEEECBTTSSSCC-B-SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCH
T ss_pred             ECCCccCCeECCEec-cCCCCcEEEEECCCCCcCCC-C-CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCH
Confidence            9998 3211  1111 000123555555  699984 5 67888887788888887765422            345667


Q ss_pred             HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-ch
Q 024997          129 ECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-ED  207 (259)
Q Consensus       129 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  207 (259)
                      +.++++...++         .+++..++.+++++.+.+.|++++++.+...+..       .......|+.+.++.. +.
T Consensus       238 ~~aa~~~~~l~---------~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  301 (377)
T 3ju7_A          238 YAAAIGIATMK---------KWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQK-------TEAVIQQFMPILCPEEVRN  301 (377)
T ss_dssp             HHHHHHHHHHH---------THHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCC-------CSCBCCSSEEEECCTTSCH
T ss_pred             HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhcCCCCccccccCCC-------CCcceEEEEEEEeCChhhH
Confidence            76666655555         3455677778888888888888764322211110       0011112334444432 36


Q ss_pred             HHHHHHHHHcCeeeecCCc--cc-----C-------------CCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          208 KDCYGILKAAKIIGREGKK--FR-----A-------------EARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       208 ~~~~~ll~~~gi~~~~g~~--f~-----~-------------~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      +.+.+.|+++||.++.+..  +.     .             ..+.+||.+..  ++++++..++.|+++++
T Consensus       302 ~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~  373 (377)
T 3ju7_A          302 KQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVV  373 (377)
T ss_dssp             HHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHh
Confidence            6777788889999887651  11     0             03468999865  88999999999988765

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.64  E-value=6.3e-15  Score=127.92  Aligned_cols=161  Identities=12%  Similarity=0.021  Sum_probs=112.9

Q ss_pred             CCcccchhh----------hhhccCccc------ccccChhhhcccCCCCceEEEEcC----CCCCChhhHH-----Hhh
Q 024997            2 PFYPLYQEQ----------TDYFESVDY------KFEGEANLWGNASSDTHLVEFVTA----PNNPDGQMNK-----AVL   56 (259)
Q Consensus         2 P~y~~~~~~----------~~~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~----p~NPtG~~~~-----~la   56 (259)
                      |.|+.+...          ++..|.++.      .+.+|+++|++.+++++++|++++    |+||||.+.+     ++|
T Consensus       110 ~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la  189 (409)
T 3jzl_A          110 QPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFV  189 (409)
T ss_dssp             SCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHH
T ss_pred             CCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHH
Confidence            667777643          344455442      234789999999998999999999    9999999983     889


Q ss_pred             cC--CCcEEEeeccccCCCCCCCCCCCCCeEEEeccccccCCCc-ceEEEEEecCHHHHHHHHHhhhh----hcCCCCHH
Q 024997           57 KG--PYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAYISL----NTMGVSRE  129 (259)
Q Consensus        57 ~~--~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~~~~----~~~~~~~~  129 (259)
                      ++  +|+++++|++|-......-+...+.+++++|+||.+|.+| .+.||++++ +++++++......    ...+++..
T Consensus       190 ~~~~~~~~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~~g~~~~  268 (409)
T 3jzl_A          190 KNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGK-EALVDLCGYRLTTPGIGREAGASLY  268 (409)
T ss_dssp             HHHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTT
T ss_pred             HhhCCCCEEEEeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeC-HHHHHHHHHHhccccccccccccHH
Confidence            99  9999999999821111111112345799999999998555 446999999 7999998875432    11222222


Q ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcC
Q 024997          130 CQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSN  172 (259)
Q Consensus       130 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (259)
                      .+.++.+.+.         ....++++..++...+.+.|++++
T Consensus       269 ~~~~~l~gl~---------~~~~r~~~~~~~a~~la~~L~~~g  302 (409)
T 3jzl_A          269 SLLEMYQGFF---------LAPHVTAQAIKGARFTAAMLAEFG  302 (409)
T ss_dssp             CHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHhCC
Confidence            1333444443         345568888999999999999876

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.64  E-value=6.5e-15  Score=128.37  Aligned_cols=161  Identities=10%  Similarity=-0.011  Sum_probs=111.9

Q ss_pred             CCcccch-----------hhhhhccCccc-----ccccChhhhcccCC--CCceEEEEcC----CCCCChhhHH-----H
Q 024997            2 PFYPLYQ-----------EQTDYFESVDY-----KFEGEANLWGNASS--DTHLVEFVTA----PNNPDGQMNK-----A   54 (259)
Q Consensus         2 P~y~~~~-----------~~~~~~g~~~~-----~~~~d~~~l~~~~~--~~~~~i~i~~----p~NPtG~~~~-----~   54 (259)
                      |.|+.+.           ..++..|.++.     .+.+|+++|++.++  +++++|++++    |+||||.+..     +
T Consensus       125 ~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~  204 (427)
T 3hvy_A          125 MPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIK  204 (427)
T ss_dssp             SCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHH
T ss_pred             CCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHH
Confidence            6676665           23344565542     34578999999987  8999999999    9999999873     8


Q ss_pred             hhcC--CCcEEEeeccccCCCCCCCCCCCCCeEEEeccccccCCCc-ceEEEEEecCHHHHHHHHHhhhhhc----CCCC
Q 024997           55 VLKG--PYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAYISLNT----MGVS  127 (259)
Q Consensus        55 la~~--~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~~~~~~----~~~~  127 (259)
                      +|++  +|+++++|++|-......-+...+.+++++|+||.+|.+| .+.||++++ ++++++++.......    .+++
T Consensus       205 ia~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~-~~li~~l~~~~~~~~~g~~~~~~  283 (427)
T 3hvy_A          205 SIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGK-EEYVTQATFRVTVPGIGGECGST  283 (427)
T ss_dssp             HHHHHCSSSEEEEECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCC
T ss_pred             HHHHhCCCCEEEEECCccccccCCCCcccCCeEEEECCcccccccccceEEEEEEC-HHHHHHHHHHhhcCCcccccCCC
Confidence            8999  8999999999821111111112345799999999998544 456999998 799999987543211    1222


Q ss_pred             HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcC
Q 024997          128 RECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSN  172 (259)
Q Consensus       128 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (259)
                      ......+.+.+.         ....++++..++...+.+.|++++
T Consensus       284 ~~~a~~~~~gl~---------~~~~r~~~~~~~a~~la~~L~~~g  319 (427)
T 3hvy_A          284 FGVMRSLYEGLF---------MAPHVTIEAVKGAVFCARIMELAG  319 (427)
T ss_dssp             TTCHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhHh---------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence            221333444443         345578889999999999999876

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.63  E-value=6.6e-15  Score=128.33  Aligned_cols=141  Identities=10%  Similarity=-0.036  Sum_probs=102.1

Q ss_pred             ccChhhhcccCC--CCceEEEEcC----CCCCChhhHH-----HhhcC--CCcEEEeeccccCCCCCCCCCCCCCeEEEe
Q 024997           22 EGEANLWGNASS--DTHLVEFVTA----PNNPDGQMNK-----AVLKG--PYAKSIYDHAYFWPHFAPIPAPADEELMIF   88 (259)
Q Consensus        22 ~~d~~~l~~~~~--~~~~~i~i~~----p~NPtG~~~~-----~la~~--~~~~vi~De~y~~~~~~~~~~~~~~~i~~~   88 (259)
                      .+|+++|++.++  +++++|++++    |+||||.+.+     ++|++  +|+++++|++|-......-+...+.+++++
T Consensus       161 ~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~  240 (427)
T 3i16_A          161 KPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAG  240 (427)
T ss_dssp             SCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGGGTCSEEEE
T ss_pred             CcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccCCccccCCeEEEe
Confidence            478899999986  7899999999    9999999873     88999  999999999982111111111234579999


Q ss_pred             ccccccCCCc-ceEEEEEecCHHHHHHHHHhhhh--hcCCCCH-HH-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 024997           89 TISKLTGHAG-SRFGWAVIKDEAVYQRMSAYISL--NTMGVSR-EC-QLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWEN  163 (259)
Q Consensus        89 S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~~~~--~~~~~~~-~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (259)
                      |+||.+|.+| .+.||++++ ++++++++.....  .....++ .. ...+.+.+.         ....++++..+++..
T Consensus       241 S~sK~lgg~g~~~gG~i~~~-~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~---------~~~~r~~~~~~~a~~  310 (427)
T 3i16_A          241 SLIKNIGGGIAPTGGYLAGT-KDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLF---------LAPHISMEALKGAIL  310 (427)
T ss_dssp             ETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred             cCcccCCCCCCceEEEEEEC-HHHHHHHHHhcccCccCccCCccHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence            9999998655 667999999 7999998874422  1111122 22 233333333         455678899999999


Q ss_pred             HHHHHHhcC
Q 024997          164 LSKIISLSN  172 (259)
Q Consensus       164 ~~~~l~~~~  172 (259)
                      +.+.|++++
T Consensus       311 la~~L~~~g  319 (427)
T 3i16_A          311 CSRIMELAG  319 (427)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHhCC
Confidence            999999876

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.62  E-value=5.4e-15  Score=132.11  Aligned_cols=234  Identities=12%  Similarity=0.022  Sum_probs=148.7

Q ss_pred             CCcccchhhhhhccC---cc------cccccChhhhcccCCCC------ceEEEEcCCCCCChhhH-----HHhhcCCCc
Q 024997            2 PFYPLYQEQTDYFES---VD------YKFEGEANLWGNASSDT------HLVEFVTAPNNPDGQMN-----KAVLKGPYA   61 (259)
Q Consensus         2 P~y~~~~~~~~~~g~---~~------~~~~~d~~~l~~~~~~~------~~~i~i~~p~NPtG~~~-----~~la~~~~~   61 (259)
                      ++|+.+...++..|.   .+      ..+.+|+++|++.+.+.      ++++++++|+||||.+.     .++|+++|+
T Consensus       200 ~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~  279 (511)
T 3vp6_A          200 QSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNL  279 (511)
T ss_dssp             TSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTC
T ss_pred             CchHHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCC
Confidence            577778888888876   33      23578999999988543      88999999999999986     389999999


Q ss_pred             EEEeecccc-----CCCCC-CCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh-hh------------
Q 024997           62 KSIYDHAYF-----WPHFA-PIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS-LN------------  122 (259)
Q Consensus        62 ~vi~De~y~-----~~~~~-~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~-~~------------  122 (259)
                      ++++|++|-     .+.+. .+.+....++++.+.+|.++.+ ..+|++++.++++......... +.            
T Consensus       280 ~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~  358 (511)
T 3vp6_A          280 WLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYD  358 (511)
T ss_dssp             EEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGC
T ss_pred             EEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhccCCccccCcccccccccC
Confidence            999999991     12111 1112234477889999998744 5689988876556555432110 00            


Q ss_pred             --------cCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeC---
Q 024997          123 --------TMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIR---  191 (259)
Q Consensus       123 --------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---  191 (259)
                              +.....+...++...+.       ...+++..++..++.+++.+.|++++++.             ...   
T Consensus       359 ~~~~~~~~~r~~~al~~~~al~~~g-------~~gl~~~~~~~~~~a~~l~~~L~~~pg~~-------------l~~~~~  418 (511)
T 3vp6_A          359 TGDKAIQCGRHVDIFKFWLMWKAKG-------TVGFENQINKCLELAEYLYAKIKNREEFE-------------MVFNGE  418 (511)
T ss_dssp             CGGGSSCSSCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHSCTTEE-------------ESSSSC
T ss_pred             ccCCCCCCCCchHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHhcCCCEE-------------EEecCC
Confidence                    00112333444444443       24677788899999999999998776532             222   


Q ss_pred             CCCCeeEEEecCCC------c----------hHHHHHHHHHcCeeeecCCcccC-CCCeEEEEeec---ChhhHHHHHHH
Q 024997          192 PPSPAYAWVKCERE------E----------DKDCYGILKAAKIIGREGKKFRA-EARFVRLSLLK---SQDDFDLLLHR  251 (259)
Q Consensus       192 ~~~~~~~~~~~~~~------~----------~~~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~---~~~~~~~~~~~  251 (259)
                      |..+.+.|.-.+..      +          ...+.+.|.+.|+.+.. ..+.. +.+++|++++.   +.++++.+++.
T Consensus       419 p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~-~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~  497 (511)
T 3vp6_A          419 PEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVG-YQPQGDKANFFRMVISNPAATQSDIDFLIEE  497 (511)
T ss_dssp             CSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEE-EEEETTEEEEEEECCCCTTCCHHHHHHHHHH
T ss_pred             CCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE-EEEeCCceEEEEEEecCCCCCHHHHHHHHHH
Confidence            44444433222211      0          11344445556765544 22222 23579999943   78999999999


Q ss_pred             HHHHhh
Q 024997          252 LDELIS  257 (259)
Q Consensus       252 l~~~l~  257 (259)
                      |+++-+
T Consensus       498 i~~~~~  503 (511)
T 3vp6_A          498 IERLGQ  503 (511)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            887643

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.62  E-value=1.1e-15  Score=135.31  Aligned_cols=205  Identities=11%  Similarity=0.016  Sum_probs=132.1

Q ss_pred             ChhhhcccCCC------CceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeeccc--cCCCC--CCCCCCCCC-
Q 024997           24 EANLWGNASSD------THLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHF--APIPAPADE-   83 (259)
Q Consensus        24 d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~--~~~~~~~~~-   83 (259)
                      |++.|++.+++      ++++|+++..+|++|.+.         .++|+++|+++|+||+|  |+...  ..+. ..+. 
T Consensus       241 d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~-~~gv~  319 (472)
T 1ohv_A          241 CLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHE-HWGLD  319 (472)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGG-GGCCS
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhcc-ccCCC
Confidence            56778888754      678866666688899753         28999999999999999  32211  1111 1111 


Q ss_pred             -eEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 024997           84 -ELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWE  162 (259)
Q Consensus        84 -~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (259)
                       ...+.||||.+ +.|   ||++ + +++. .+.......+.+.+++.|.++.++++...+       +...++++++++
T Consensus       320 ~~~Di~t~sK~~-l~G---G~~~-~-~~~~-~~~~~~~~~T~~~~~~~~aaa~aal~~~~~-------~~~~~~~~~~~~  385 (472)
T 1ohv_A          320 DPADVMTFSKKM-MTG---GFFH-K-EEFR-PNAPYRIFNTWLGDPSKNLLLAEVINIIKR-------EDLLSNAAHAGK  385 (472)
T ss_dssp             SCCSEEEECGGG-SSE---EEEE-C-GGGS-CSSSSSSCCSSSSCHHHHHHHHHHHHHHHH-------TTHHHHHHHHHH
T ss_pred             CCCCEEEEcccc-ccC---CccC-c-hhhc-ccccccccCccCccHHHHHHHHHHHHHHHh-------CCHHHHHHHHHH
Confidence             12356999995 346   7777 5 4652 222333345667899999999888875321       124677788888


Q ss_pred             HHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHcCeeeecCCcccCCCCeEEEEee-
Q 024997          163 NLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL-  239 (259)
Q Consensus       163 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~-  239 (259)
                      ++.+.|+++..    .++.    .+....+. |.++++++...  ..++...++ ++||.+.|+     +.+++|++++ 
T Consensus       386 ~l~~~L~~l~~----~~~~----~v~~~~~~-g~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~-----g~~~iRi~~~~  450 (472)
T 1ohv_A          386 VLLTGLLDLQA----RYPQ----FISRVRGR-GTFCSFDTPDESIRNKLISIAR-NKGVMLGGC-----GDKSIRFRPTL  450 (472)
T ss_dssp             HHHHHHHHHHH----HCTT----TCEEEEEE-TTEEEEECSSHHHHHHHHHHHH-HTTEECEEE-----TTTEEEECCCT
T ss_pred             HHHHHHHHHHh----hCCC----cEEeecCC-ceEEEEEeCChhHHHHHHHHHH-HCCeEEecC-----CCCEEEEECCC
Confidence            88888776420    0100    02223444 44556677542  234555555 689999984     2579999775 


Q ss_pred             -cChhhHHHHHHHHHHHhhh
Q 024997          240 -KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       240 -~~~~~~~~~~~~l~~~l~~  258 (259)
                       .+++++++++++|++++++
T Consensus       451 ~~t~e~i~~~~~~l~~~l~~  470 (472)
T 1ohv_A          451 VFRDHHAHLFLNIFSDILAD  470 (472)
T ss_dssp             TCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHh
Confidence             3899999999999998764

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.61  E-value=7.4e-15  Score=131.39  Aligned_cols=236  Identities=11%  Similarity=0.001  Sum_probs=146.7

Q ss_pred             CCcccchhhhhhccC---cc------cccccChhhhcccCCC------CceEEEEcCCCCCChhhH-----HHhhcCCCc
Q 024997            2 PFYPLYQEQTDYFES---VD------YKFEGEANLWGNASSD------THLVEFVTAPNNPDGQMN-----KAVLKGPYA   61 (259)
Q Consensus         2 P~y~~~~~~~~~~g~---~~------~~~~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~-----~~la~~~~~   61 (259)
                      +.|+.+...++..|.   .+      ..+.+|+++|++.+.+      ++++|++++|+||||.+.     .++|+++|+
T Consensus       211 ~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~  290 (515)
T 2jis_A          211 ECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGL  290 (515)
T ss_dssp             TSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTC
T ss_pred             CccHHHHHHHHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC
Confidence            456777777777665   33      2356788999988843      488999999999999886     389999999


Q ss_pred             EEEeecccc-----CCCCC-CCCCCCCCeEEEeccccccCCCcceEEEEEecCH-HHHHHHH----Hhhhh---------
Q 024997           62 KSIYDHAYF-----WPHFA-PIPAPADEELMIFTISKLTGHAGSRFGWAVIKDE-AVYQRMS----AYISL---------  121 (259)
Q Consensus        62 ~vi~De~y~-----~~~~~-~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~-~~~~~~~----~~~~~---------  121 (259)
                      ++++|++|-     .+.+. .+.+..+.++++.|++|.++.+ .++|++++.++ ++++...    .+...         
T Consensus       291 ~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p-~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~  369 (515)
T 2jis_A          291 WLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAG-LQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVAL  369 (515)
T ss_dssp             EEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESCCSCHHHHHHCC---------CCSCGGG
T ss_pred             eEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCC-CCeeEEEEeChHHHHHHHhcCCchhccCCcccccccC
Confidence            999999992     11111 1222334578999999998733 56999999863 3655421    11100         


Q ss_pred             --h------cCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeC-C
Q 024997          122 --N------TMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIR-P  192 (259)
Q Consensus       122 --~------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~  192 (259)
                        .      ......+.++++.+.+..       ..+++..++..++.+++.+.|++++++.             ... +
T Consensus       370 ~~~~~~~~~~rr~~al~~~~~l~~lg~-------~g~~~~~~~~~~~a~~l~~~L~~~~g~~-------------~~~~~  429 (515)
T 2jis_A          370 DTGDKVVQCGRRVDCLKLWLMWKAQGD-------QGLERRIDQAFVLARYLVEEMKKREGFE-------------LVMEP  429 (515)
T ss_dssp             CCGGGCSCSSCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTSTTEE-------------ESSCC
T ss_pred             CCCCCCCCCCCcccHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHhcCCCEE-------------EeCCC
Confidence              0      001123444555555542       2466678888899999999998876532             222 3


Q ss_pred             CCCeeEEEecCC------CchH----------HHHHHHHHcCeeeecCCcccCCCCeEEEEee---cChhhHHHHHHHHH
Q 024997          193 PSPAYAWVKCER------EEDK----------DCYGILKAAKIIGREGKKFRAEARFVRLSLL---KSQDDFDLLLHRLD  253 (259)
Q Consensus       193 ~~~~~~~~~~~~------~~~~----------~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~---~~~~~~~~~~~~l~  253 (259)
                      ..+.+.+...+.      ...+          .+...+.+.|+............+++|++++   .+.++++.++++|+
T Consensus       430 ~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~  509 (515)
T 2jis_A          430 EFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELE  509 (515)
T ss_dssp             SSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            344444433221      0011          1233344567654321111122468999995   38999999999999


Q ss_pred             HHhhh
Q 024997          254 ELISK  258 (259)
Q Consensus       254 ~~l~~  258 (259)
                      +++++
T Consensus       510 ~~~~~  514 (515)
T 2jis_A          510 RLGQD  514 (515)
T ss_dssp             HHHTT
T ss_pred             HHHhh
Confidence            88753

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.58  E-value=1.2e-13  Score=118.95  Aligned_cols=227  Identities=13%  Similarity=-0.011  Sum_probs=140.6

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcC-CCCCChhh-HHHhhcCCCcEEEeeccccC
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTA-PNNPDGQM-NKAVLKGPYAKSIYDHAYFW   71 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~-p~NPtG~~-~~~la~~~~~~vi~De~y~~   71 (259)
                      +|+|+.+...++..|.++.       .+.+|+++|++.++++++++++++ ++||.=.- +.++|+++|+++|+|++|-.
T Consensus        87 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~  166 (390)
T 3b8x_A           87 AVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLEDNCESM  166 (390)
T ss_dssp             SSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEECGGGCCCCHHHHHHHHTTSCCEEEEECTTCT
T ss_pred             CCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEECCccChhhHHHHHHHHHHcCCEEEEECcCcc
Confidence            4788888888888787652       267788999999988889888876 55662111 14899999999999999921


Q ss_pred             CCCCCCCCCCCCeEEEecccc----ccCCCcceEEEEEecCHHHHHHHHHhhhhh-------------------------
Q 024997           72 PHFAPIPAPADEELMIFTISK----LTGHAGSRFGWAVIKDEAVYQRMSAYISLN-------------------------  122 (259)
Q Consensus        72 ~~~~~~~~~~~~~i~~~S~SK----~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~-------------------------  122 (259)
                      ...... ...+....+.++||    .++ +| +.|+++++++++.+.+.......                         
T Consensus       167 g~~~~~-~~~g~~~~~~~~s~~~~k~~~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  243 (390)
T 3b8x_A          167 GATFNN-KCAGTFGLMGTFSSFYSNHIA-TM-EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFK  243 (390)
T ss_dssp             TCEETT-EETTSSSSEEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSC
T ss_pred             cCEECC-cccccccceEEEEccCCCCCc-cC-CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccc
Confidence            111111 11122223444444    442 23 34999988557777665543211                         


Q ss_pred             ------cCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCC--CC
Q 024997          123 ------TMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP--PS  194 (259)
Q Consensus       123 ------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~  194 (259)
                            ..+.+++...++...++         .+++..++.+++++++.+.|++++++.+             ..+  ..
T Consensus       244 ~~~~g~~~~~~~~~aa~~l~~l~---------~l~~~~~~~~~~~~~l~~~L~~~~~~~~-------------~~~~~~~  301 (390)
T 3b8x_A          244 FVLPGYNVRPLEMSGAIGIEQLK---------KLPRFISVRRKNAEYFLDKFKDHPYLDV-------------QQETGES  301 (390)
T ss_dssp             BCSCCCBCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHTTCSSEEE-------------CCCCSBC
T ss_pred             eeccccccCcCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhcCCCCccc-------------CCCCCCc
Confidence                  11155665555555444         4556777888888888888887654221             111  23


Q ss_pred             Ce-eEEEecC---CCchHHHHHHHHHcCeeeec---CCcccC-C--------------------CCeEEEEeec--Chhh
Q 024997          195 PA-YAWVKCE---REEDKDCYGILKAAKIIGRE---GKKFRA-E--------------------ARFVRLSLLK--SQDD  244 (259)
Q Consensus       195 ~~-~~~~~~~---~~~~~~~~~ll~~~gi~~~~---g~~f~~-~--------------------~~~~Ris~~~--~~~~  244 (259)
                      ++ .+++.++   ..+.+.+.+.|.++||.+++   |..+.. +                    .+.+||++..  ++++
T Consensus       302 ~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~d  381 (390)
T 3b8x_A          302 SWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDE  381 (390)
T ss_dssp             CCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHH
T ss_pred             ccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHH
Confidence            33 2455555   22456666777789999987   321111 0                    1358999866  8899


Q ss_pred             HHHHHHHH
Q 024997          245 FDLLLHRL  252 (259)
Q Consensus       245 ~~~~~~~l  252 (259)
                      ++.+++.|
T Consensus       382 i~~i~~~l  389 (390)
T 3b8x_A          382 IDYLREVL  389 (390)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99988875

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.56  E-value=2.5e-14  Score=126.93  Aligned_cols=232  Identities=9%  Similarity=-0.038  Sum_probs=149.0

Q ss_pred             CCcccchhhhhhccCcc------cccccChhhhcccCCCC------ceEEEEcCCCCCChhhH-----HHhhcCCCcEEE
Q 024997            2 PFYPLYQEQTDYFESVD------YKFEGEANLWGNASSDT------HLVEFVTAPNNPDGQMN-----KAVLKGPYAKSI   64 (259)
Q Consensus         2 P~y~~~~~~~~~~g~~~------~~~~~d~~~l~~~~~~~------~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi   64 (259)
                      +.++.+...++..|..+      ..+.+|+++|++.+++.      +.+++++.++|+||.+-     .++|+++|++++
T Consensus       196 ~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lh  275 (481)
T 4e1o_A          196 QAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLH  275 (481)
T ss_dssp             TSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEE
T ss_pred             cchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEE
Confidence            45556666666666654      24578999999998432      67789999999999886     389999999999


Q ss_pred             eecccc-----CCCCCCC-CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHH-hhhhh---------------
Q 024997           65 YDHAYF-----WPHFAPI-PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSA-YISLN---------------  122 (259)
Q Consensus        65 ~De~y~-----~~~~~~~-~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~-~~~~~---------------  122 (259)
                      +|++|-     .+..... .+....+.+..+++|.++.+ .-+|++++.+++....... ...+.               
T Consensus       276 vDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~  354 (481)
T 4e1o_A          276 IDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVH-FDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQ  354 (481)
T ss_dssp             EECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGS
T ss_pred             eehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCC-CceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCccccc
Confidence            999991     1212111 12223367788999998754 3367777776555432111 00000               


Q ss_pred             ---cCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEE
Q 024997          123 ---TMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAW  199 (259)
Q Consensus       123 ---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (259)
                         +.....+.++++...+..       +.+++..++..++.+.+.+.|+++++             +....+.....++
T Consensus       355 ~~~~r~~~~l~~~~al~~~g~-------~g~~~~~~~~~~~a~~l~~~L~~~~g-------------~~~~~~~~~~~v~  414 (481)
T 4e1o_A          355 IPLSRRFRSVKLWFVIRSFGV-------KNLQAHVRHGTEMAKYFESLVRNDPS-------------FEIPAKRHLGLVV  414 (481)
T ss_dssp             SSSCCCCTHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTCTT-------------EECCSCCCSSEEE
T ss_pred             ccCCCCccHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHhcCCC-------------eEEecCCceeEEE
Confidence               011134555655555542       35677788899999999999998765             3333444556667


Q ss_pred             EecCCC---chHHHHHHHHHcC-eeeecCCcccCCCCeEEEEeec---ChhhHHHHHHHHHHHhh
Q 024997          200 VKCERE---EDKDCYGILKAAK-IIGREGKKFRAEARFVRLSLLK---SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       200 ~~~~~~---~~~~~~~ll~~~g-i~~~~g~~f~~~~~~~Ris~~~---~~~~~~~~~~~l~~~l~  257 (259)
                      ++++..   ..++...+. +.| +.+.|+...  +..++|++++.   ++++++.++++|+++.+
T Consensus       415 f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~~~--g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~  476 (481)
T 4e1o_A          415 FRLKGPNSLTENVLKEIA-KAGRLFLIPATIQ--DKLIIRFTVTSQFTTRDDILRDWNLIRDAAT  476 (481)
T ss_dssp             EEESSCHHHHHHHHHHHH-HHCSSBCEEEEET--TEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEeCCchHHHHHHHHHHH-hCCeEEEEeeEEC--CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            777543   234445545 455 455543322  35689999864   67899999999988765

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.56  E-value=2.9e-14  Score=126.32  Aligned_cols=232  Identities=10%  Similarity=0.014  Sum_probs=145.1

Q ss_pred             CCcccchhhhhhccCccc------ccccChhhhcccCCCC------ceEEEEcCCCCCChhhH-----HHhhcCCCcEEE
Q 024997            2 PFYPLYQEQTDYFESVDY------KFEGEANLWGNASSDT------HLVEFVTAPNNPDGQMN-----KAVLKGPYAKSI   64 (259)
Q Consensus         2 P~y~~~~~~~~~~g~~~~------~~~~d~~~l~~~~~~~------~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi   64 (259)
                      +.++.+...++..|..+.      .+ +|+++|++.+++.      +.+++++.++|+||.+.     .++|+++|++++
T Consensus       190 ~~H~s~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lh  268 (475)
T 3k40_A          190 QAHSSVERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIH  268 (475)
T ss_dssp             TSCHHHHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEE
T ss_pred             CchHHHHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEE
Confidence            345556666666676542      34 8999999988432      67789999999999986     389999999999


Q ss_pred             eecccc-----CCCCCC-CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHH-HHHHH---hhhhh-----------c
Q 024997           65 YDHAYF-----WPHFAP-IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVY-QRMSA---YISLN-----------T  123 (259)
Q Consensus        65 ~De~y~-----~~~~~~-~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~-~~~~~---~~~~~-----------~  123 (259)
                      +|++|-     .+.... +.+....+.+..|++|.++.| ..+|+++..+++.. +.+..   +....           +
T Consensus       269 vD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~  347 (475)
T 3k40_A          269 VDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVN-FDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQ  347 (475)
T ss_dssp             EECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESSGGGC--------------------------
T ss_pred             EeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCC-CceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCccccc
Confidence            999991     121111 112223477889999987633 44788887754432 22211   11000           0


Q ss_pred             C-C---CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEE
Q 024997          124 M-G---VSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAW  199 (259)
Q Consensus       124 ~-~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (259)
                      . +   ...+.++++...+..       ..+++..++..++.+++.+.|+++++             +....+.....++
T Consensus       348 ~~~sr~~~~l~l~~al~~~g~-------~g~~~~~~~~~~~a~~l~~~L~~~~g-------------~~l~~~~~~~iv~  407 (475)
T 3k40_A          348 IPLGRRFRALKLWFVLRLYGV-------ENLQAHIRRHCNFAKQFGDLCVADSR-------------FELAAEINMGLVC  407 (475)
T ss_dssp             -CCCGGGTHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHSTT-------------EEESSCCBTTEEE
T ss_pred             ccCCCcccHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHhcCCC-------------EEEecCCceEEEE
Confidence            0 0   123444445444432       34667788889999999999998765             3333444445556


Q ss_pred             EecCCC---chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec---ChhhHHHHHHHHHHHhh
Q 024997          200 VKCERE---EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK---SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       200 ~~~~~~---~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~---~~~~~~~~~~~l~~~l~  257 (259)
                      ++++..   ..++...+.++.++.+.|+...  +..++|++++.   ++++++.++++|+++.+
T Consensus       408 f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~--g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~  469 (475)
T 3k40_A          408 FRLKGSNERNEALLKRINGRGHIHLVPAKIK--DVYFLRMAICSRFTQSEDMEYSWKEVSAAAD  469 (475)
T ss_dssp             EEESSCHHHHHHHHHHHHHHTSCBCEEEEET--TEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEeCCchHHHHHHHHHHHhCCcEEEEeeEEC--CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            666432   2345555555544455554433  35789999864   78899999999988764

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.55  E-value=5e-13  Score=123.47  Aligned_cols=244  Identities=9%  Similarity=0.020  Sum_probs=143.1

Q ss_pred             CCcccchhh-hhhccCccc-------cc----ccChhhh-----cccCCCC------c----eEEEEcCCCCCChhhH--
Q 024997            2 PFYPLYQEQ-TDYFESVDY-------KF----EGEANLW-----GNASSDT------H----LVEFVTAPNNPDGQMN--   52 (259)
Q Consensus         2 P~y~~~~~~-~~~~g~~~~-------~~----~~d~~~l-----~~~~~~~------~----~~i~i~~p~NPtG~~~--   52 (259)
                      |+|+.+... +++.|.++.       .|    .+|+++|     ++.++++      +    +++++++| ||+|.+.  
T Consensus       221 ~~H~S~~~~~~~l~Ga~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl  299 (730)
T 1c4k_A          221 NNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNA  299 (730)
T ss_dssp             TCCHHHHHHHTTTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECH
T ss_pred             CchHHHHHHHHHHCCCEEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCH
Confidence            566666655 666676542       12    2688888     8888654      4    88899999 6999987  


Q ss_pred             ---HHhhcCCCcEEEeecccc-----CCCC---CCCC----CC-CCCeEEEeccccccCCCcceE-EEEEecCHHH----
Q 024997           53 ---KAVLKGPYAKSIYDHAYF-----WPHF---APIP----AP-ADEELMIFTISKLTGHAGSRF-GWAVIKDEAV----  111 (259)
Q Consensus        53 ---~~la~~~~~~vi~De~y~-----~~~~---~~~~----~~-~~~~i~~~S~SK~~g~~G~R~-G~i~~~~~~~----  111 (259)
                         .++|+++|+++++|++|.     .+..   ..+.    +. .+++++++|+||.++  |.+. |+++++++.+    
T Consensus       300 ~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~--g~~~gg~I~v~~~~l~g~~  377 (730)
T 1c4k_A          300 HEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA--GFSQTSQIHKKDSHIKGQL  377 (730)
T ss_dssp             HHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSS--CCTTCEEEEEECGGGTTST
T ss_pred             HHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCC--CCCCEEEEEecchhhcCcc
Confidence               389999999999999982     2211   1121    11 235699999999874  4444 5665553221    


Q ss_pred             ----HHHHHHhhh-hhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh-cCCCccccccc----
Q 024997          112 ----YQRMSAYIS-LNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISL-SNRFSLQEIAP----  181 (259)
Q Consensus       112 ----~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~----  181 (259)
                          ...+..... ..+..++....++...+++..    ......++.+++.++.+.+++.|++ ++++.+..-..    
T Consensus       378 ~~i~~~~~~~~~~~~~stsp~~~~iaal~aA~~~l----~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~  453 (730)
T 1c4k_A          378 RYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQ----EGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGK  453 (730)
T ss_dssp             TCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTE
T ss_pred             cccCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccc
Confidence                123333222 222344444444433344422    1112344567788888888888887 56554321100    


Q ss_pred             -----------cccccceeeC---------C-CCCee-----EEEecCC------------CchHHHHHHHHHcCeeeec
Q 024997          182 -----------QYCTYFKKIR---------P-PSPAY-----AWVKCER------------EEDKDCYGILKAAKIIGRE  223 (259)
Q Consensus       182 -----------~~~~~~~~~~---------~-~~~~~-----~~~~~~~------------~~~~~~~~ll~~~gi~~~~  223 (259)
                                 ....+|...+         . .+.++     +.+..+.            .+...+.+.|+++||.+..
T Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~  533 (730)
T 1c4k_A          454 KWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEK  533 (730)
T ss_dssp             EGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSE
T ss_pred             cccccccccccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEE
Confidence                       0001111100         0 11111     4555532            2345666677778998865


Q ss_pred             CCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          224 GKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       224 g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                           .+.+.+|++++.  ++++++.+++.|.++.+
T Consensus       534 -----~~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~  564 (730)
T 1c4k_A          534 -----SDLNSILFLMTPAETPAKMNNLITQLLQLQR  564 (730)
T ss_dssp             -----ECSSEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             -----CCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence                 235788999865  88999999999887754

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.50  E-value=2.2e-13  Score=116.70  Aligned_cols=216  Identities=12%  Similarity=0.042  Sum_probs=140.0

Q ss_pred             ccChhhhcccCCCCceEEEEcCCCCCChhhHHHhhcCCCcEEEeeccc-cCCCCCCCCCCCCCeEEEeccccccCCCcce
Q 024997           22 EGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAY-FWPHFAPIPAPADEELMIFTISKLTGHAGSR  100 (259)
Q Consensus        22 ~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~la~~~~~~vi~De~y-~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R  100 (259)
                      ..+++.++..++++++++.+++-.|.||.+++-+|+++|+++++|.+. ++.....+ +..+  ++..|..|.+|.+|  
T Consensus       139 ~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pii~~~~~~~~~vD~~q~~g~~~id~-~~~~--~~~~s~~K~~gp~G--  213 (377)
T 3e77_A          139 TKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSNFLSKPVDV-SKFG--VIFAGAQKNVGSAG--  213 (377)
T ss_dssp             CSCCCGGGCCCCTTCSCEEEESEETTTTEECSSCCCCTTCCEEEECTTTTTSSCCCG-GGCS--EEEEEGGGTTSCTT--
T ss_pred             CCCCChHHhccCCCccEEEEeCccCchheEchhhhccCCCEEEEEcccccCCCCCch-hhcC--EEEEecccccCCCc--
Confidence            456677777788899998999888999999866788999999999977 22111112 2223  47789999999999  


Q ss_pred             EEEEEecCHHHHHHHH----------Hh-hhhhcCCCC-HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 024997          101 FGWAVIKDEAVYQRMS----------AY-ISLNTMGVS-RECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKII  168 (259)
Q Consensus       101 ~G~i~~~~~~~~~~~~----------~~-~~~~~~~~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (259)
                      +|++++. +++++.+.          .. ......+.+ ...-+++.++++...+   ..=++...++.++..+++.+.|
T Consensus       214 ~g~l~~~-~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~---~GG~~~i~~~~~~l~~~l~~~L  289 (377)
T 3e77_A          214 VTVVIVR-DDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKN---NGGAAAMEKLSSIKSQTIYEII  289 (377)
T ss_dssp             CEEEEEE-TTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEc-HHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHHH
Confidence            7888887 35532211          11 111123333 3333444455553211   1125667888889999999999


Q ss_pred             HhcCCCccccccccccccceeeCCCCCeeEEEecCCCc--h---HHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--C
Q 024997          169 SLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREE--D---KDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--S  241 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~  241 (259)
                      ++++++.+....+         ...++..+.+.++..+  .   ..+...++++||.+++|...   .+.+|+|+..  +
T Consensus       290 ~~~~g~~~~~~~~---------~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~---~g~iRiS~~~~~t  357 (377)
T 3e77_A          290 DNSQGFYVCPVEP---------QNRSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRS---VGGIRASLYNAVT  357 (377)
T ss_dssp             HTSTTSEECCSCG---------GGBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTT---TCSEEEECCTTSC
T ss_pred             HhcCCceecCCCH---------HHcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCc---CCEEEEECCCCCC
Confidence            9876533211000         1234445566666531  1   23444455789999987632   3569999976  8


Q ss_pred             hhhHHHHHHHHHHHhhh
Q 024997          242 QDDFDLLLHRLDELISK  258 (259)
Q Consensus       242 ~~~~~~~~~~l~~~l~~  258 (259)
                      .++++.+++.|++++++
T Consensus       358 ~edId~l~~al~~~~~~  374 (377)
T 3e77_A          358 IEDVQKLAAFMKKFLEM  374 (377)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998865

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.49  E-value=1.7e-12  Score=110.70  Aligned_cols=209  Identities=16%  Similarity=0.148  Sum_probs=140.4

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhHHHhhcCCCcEEEeeccc-cCCCCCCCCCCCCCeEEEeccccccCCCcceE
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAY-FWPHFAPIPAPADEELMIFTISKLTGHAGSRF  101 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~la~~~~~~vi~De~y-~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~  101 (259)
                      ++++.  + ++++++++.+++.+|.||.+++.+++. |+++++|.+. ++.....+   .+-.+++.|..|.+|.+|  +
T Consensus       131 ~~~~~--~-l~~~t~lv~~~~~e~~tG~~~~~i~~~-~~~~~vD~~q~~g~~~id~---~~~d~~~~s~~K~~gp~G--~  201 (361)
T 3m5u_A          131 HIPRV--E-FSDNADYAYICSNNTIYGTQYQNYPKT-KTPLIVDASSDFFSRKVDF---SNIALFYGGVQKNAGISG--L  201 (361)
T ss_dssp             SCCCC--C-CCTTSSEEEEESEETTTTEECSSCCCC-SSCEEEECGGGTTSSCCCC---TTEEEEEEETTTTSSCTT--C
T ss_pred             cCChh--h-cCCCCCEEEEeCCCCCcceeCCccccc-CCEEEEEcccccCCCCCCc---ccCCEEEEechhccCCCc--c
Confidence            45555  3 788999999998899999997777765 9999999987 32112222   234688999999999999  8


Q ss_pred             EEEEecCHHHHHHHHH--------hh----hhhcCCC-CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 024997          102 GWAVIKDEAVYQRMSA--------YI----SLNTMGV-SRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKII  168 (259)
Q Consensus       102 G~i~~~~~~~~~~~~~--------~~----~~~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (259)
                      |++++. +++++.+..        +.    .....+. +...-.++.++++...+   ..-++...++.++..+++.+.|
T Consensus       202 g~l~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~---~gG~~~i~~~~~~l~~~l~~~L  277 (361)
T 3m5u_A          202 SCIFIR-KDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLN---QGGLDKVHEKNSQKATMLYECI  277 (361)
T ss_dssp             EEEEEE-HHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEc-HHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHHH
Confidence            999999 688877653        11    1112233 33444445555553211   1025667888889999999999


Q ss_pred             HhcCCC-ccccccccccccceeeCCCCCeeEEEecCC---CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--Ch
Q 024997          169 SLSNRF-SLQEIAPQYCTYFKKIRPPSPAYAWVKCER---EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQ  242 (259)
Q Consensus       169 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~  242 (259)
                      ++++++ .+. ..+         ...++..+.+.+++   .+ +.+...|+++||.+++|...   .+.+|+|+..  +.
T Consensus       278 ~~~~g~~~~~-~~~---------~~rs~~ivsf~~~~~~~~~-~~~~~~L~~~gI~~~~g~~~---~g~iRiS~~~~~t~  343 (361)
T 3m5u_A          278 DLSNGFYKGH-ADK---------KDRSLMNVSFNIAKNKDLE-PLFVKEAEEAGMIGLKGHRI---LGGIRASIYNALNL  343 (361)
T ss_dssp             HTSTTSEEES-SCG---------GGBCSSEEEEEESSCTTHH-HHHHHHHHHTTEECCBCCTT---TCSEEEECCTTSCH
T ss_pred             HHCCCeeecc-CCH---------HHcCCeEEEEECCCchhhh-HHHHHHHHHCCCEEecCCCc---cCeEEEEccCCCCH
Confidence            887743 111 000         11233445566664   23 34556778899999887643   2459999976  89


Q ss_pred             hhHHHHHHHHHHHhhh
Q 024997          243 DDFDLLLHRLDELISK  258 (259)
Q Consensus       243 ~~~~~~~~~l~~~l~~  258 (259)
                      ++++.+++.|+++.++
T Consensus       344 edId~l~~al~~~~~~  359 (361)
T 3m5u_A          344 DQVKTLCEFMKEFQGK  359 (361)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998764

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.48  E-value=2.2e-13  Score=119.09  Aligned_cols=161  Identities=12%  Similarity=-0.043  Sum_probs=107.4

Q ss_pred             CCcccchhhhh----------hccCccc------ccccChhhhcccCCCCceEEEEcC-CCCCChhhH--------HHhh
Q 024997            2 PFYPLYQEQTD----------YFESVDY------KFEGEANLWGNASSDTHLVEFVTA-PNNPDGQMN--------KAVL   56 (259)
Q Consensus         2 P~y~~~~~~~~----------~~g~~~~------~~~~d~~~l~~~~~~~~~~i~i~~-p~NPtG~~~--------~~la   56 (259)
                      |.|+.+...+.          ..|.++.      .+.+|+++|++.+++++++|++++ ||||+|...        .++|
T Consensus       116 ~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la  195 (431)
T 3ht4_A          116 KPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFV  195 (431)
T ss_dssp             SCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHH
T ss_pred             CCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHH
Confidence            67777775543          2455442      245789999999998999999995 888888765        2889


Q ss_pred             cC--CCcEEEeeccccCCCCCCCCCCCCCeEEEeccccccCC-CcceEEEEEecCHHHHHHHHHhhhhhc----CCCCHH
Q 024997           57 KG--PYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGH-AGSRFGWAVIKDEAVYQRMSAYISLNT----MGVSRE  129 (259)
Q Consensus        57 ~~--~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g~-~G~R~G~i~~~~~~~~~~~~~~~~~~~----~~~~~~  129 (259)
                      ++  +|+++|+|++|-......-+...+.+++++|+||.+|. .+...||++++ +++++.+........    .+++..
T Consensus       196 ~~~~~~~~livDea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~~~~~~~  274 (431)
T 3ht4_A          196 KEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTGGYIVGK-EQYVEACAYRLTSPGIGAEAGASLY  274 (431)
T ss_dssp             HHHCTTCEEEEECTTCTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTTTSCSCCCS
T ss_pred             HhhCCCCEEEEeCCChhhccCCCccccCCeEEEcCccccCCCCCCCceEEEEec-HHHHHHHHHHhccCCcccccCccHH
Confidence            99  99999999999211100001112357999999999652 12333999999 799999887544221    122222


Q ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcC
Q 024997          130 CQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSN  172 (259)
Q Consensus       130 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (259)
                      ...++...+.         ....+.++..++...+.+.|++++
T Consensus       275 ~~~~~~~~l~---------~~~~~~~~~~~~a~~l~~~L~~~g  308 (431)
T 3ht4_A          275 SLQEMYQGFF---------LAPHVAGQALKGAIFTAAFLEKLG  308 (431)
T ss_dssp             CSHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhHhh---------hHHHHHHHHHHHHHHHHHHHHhCc
Confidence            1233444443         344567788899999999999876

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.45  E-value=4e-12  Score=118.23  Aligned_cols=241  Identities=8%  Similarity=0.016  Sum_probs=141.1

Q ss_pred             CCCcccchhhhhhccCccc-------ccc----c-----ChhhhcccCC--CCce--------EEEEcCCCCCChhhH--
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFE----G-----EANLWGNASS--DTHL--------VEFVTAPNNPDGQMN--   52 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~----~-----d~~~l~~~~~--~~~~--------~i~i~~p~NPtG~~~--   52 (259)
                      .|+|+.+...+...|.++.       .|+    +     |++.|++.++  ++++        ++++++| ||+|.+.  
T Consensus       252 ~~~h~s~~~~~~~~G~~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl  330 (755)
T 2vyc_A          252 RNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNA  330 (755)
T ss_dssp             SSCCHHHHHHHHHHCCEEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECH
T ss_pred             CCchHHHHHHHHHcCCEEEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCH
Confidence            3667776666777777642       122    3     8888988873  2443        8899998 7999997  


Q ss_pred             ---HHhhcCCCcEEEeecccc-----CCC---CCCC----CC-CCCCeEEEeccccccCCCcce-EEEEEecCHH---H-
Q 024997           53 ---KAVLKGPYAKSIYDHAYF-----WPH---FAPI----PA-PADEELMIFTISKLTGHAGSR-FGWAVIKDEA---V-  111 (259)
Q Consensus        53 ---~~la~~~~~~vi~De~y~-----~~~---~~~~----~~-~~~~~i~~~S~SK~~g~~G~R-~G~i~~~~~~---~-  111 (259)
                         .++|+++|+++++|++|.     .+.   ...+    .+ ..++++++.|+||.++  |.+ .|++++++ +   + 
T Consensus       331 ~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~--g~~~g~~i~~~~-~~~~i~  407 (755)
T 2vyc_A          331 KEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN--ALSQASYIHVRE-GRGAIN  407 (755)
T ss_dssp             HHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSS--CCTTCEEEEEEC-CBTCCC
T ss_pred             HHHHHHHHHcCCEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECcccccc--CcCCeeeeeecC-cccccC
Confidence               389999999999999982     221   1111    12 2345779999999874  555 57777764 3   1 


Q ss_pred             HHHHHHhhh-hhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCC---------Cccccccc
Q 024997          112 YQRMSAYIS-LNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNR---------FSLQEIAP  181 (259)
Q Consensus       112 ~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~  181 (259)
                      ...+..... ..+..++.+..++...+++..    ...-..++.+++.++.+.+++.|+++++         +.+  +.+
T Consensus       408 ~~~~~~~~~~~~s~sp~~~~iaal~aA~~~l----~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~--~~~  481 (755)
T 2vyc_A          408 FSRFNQAYMMHATTSPLYAICASNDVAVSMM----DGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKP--WNK  481 (755)
T ss_dssp             HHHHHHHHHHTSCSSCCHHHHHHHHHHHHHH----STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEE--SSC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeec--cCc
Confidence            123333222 223345555444444444432    1111344566777777777777776654         211  111


Q ss_pred             ccc-----------------------ccceeeCC---------CCC------eeEEEecCC-----------CchHHHHH
Q 024997          182 QYC-----------------------TYFKKIRP---------PSP------AYAWVKCER-----------EEDKDCYG  212 (259)
Q Consensus       182 ~~~-----------------------~~~~~~~~---------~~~------~~~~~~~~~-----------~~~~~~~~  212 (259)
                      ...                       .+|...+.         ..+      .-+.+.++.           .+...+.+
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~  561 (755)
T 2vyc_A          482 EVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTA  561 (755)
T ss_dssp             SEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHH
T ss_pred             hhccccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHH
Confidence            000                       00100000         011      233454542           12366777


Q ss_pred             HHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHh
Q 024997          213 ILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       213 ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l  256 (259)
                      .|+++||.+..     .+.+.+|++++.  ++++++.+++.|.++.
T Consensus       562 ~L~~~gI~~e~-----~~~~~v~~~~~~g~t~~~~~~l~~al~~~~  602 (755)
T 2vyc_A          562 WLGRHGIVPTR-----TTDFQIMFLFSMGVTRGKWGTLVNTLCSFK  602 (755)
T ss_dssp             HHHTTTCCCSE-----ECSSEEEEECCTTCCTTTTHHHHHHHHHHH
T ss_pred             HHHHCCCEEee-----cCCCeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence            78789987754     246889999865  8888998888888764

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.36  E-value=1.6e-11  Score=105.66  Aligned_cols=209  Identities=13%  Similarity=0.028  Sum_probs=132.4

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhh-H--HHhhcCCCcEEEeeccc-cCCCCCCCCCCCCCeEEEeccccccCCCc
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQM-N--KAVLKGPYAKSIYDHAY-FWPHFAPIPAPADEELMIFTISKLTGHAG   98 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~-~--~~la~~~~~~vi~De~y-~~~~~~~~~~~~~~~i~~~S~SK~~g~~G   98 (259)
                      ++++.++..++++++++.+++-+|.||.+ .  .+++  +|+++++|.++ ++.....+ +..+  +.+.|..|.+|.+|
T Consensus       154 ~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~pi~~i~--~g~~~~vDa~qs~g~~pidv-~~~~--~~~~s~hK~lGP~G  228 (386)
T 3qm2_A          154 AVKPMREWQLSDNAAYLHYCPNETIDGIAIDETPDFG--PEVVVTADFSSTILSAPLDV-SRYG--VIYAGAQKNIGPAG  228 (386)
T ss_dssp             EECCGGGCCCCTTCSCEEECSEETTTTEECCCCCCCC--TTCCEEEECTTTTTSSCCCG-GGCS--EEEEETTTTTCCTT
T ss_pred             CCchHHHhhcCCCCcEEEEECCcCCcCEecCchhhhc--CCCEEEEEcccccCCCCCCc-cccC--EEEEecccccCCCc
Confidence            67778888888999998999888999997 4  3555  79999999977 22111122 2223  56789999999999


Q ss_pred             ceEEEEEecCHHHHHHHH--------------HhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 024997           99 SRFGWAVIKDEAVYQRMS--------------AYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENL  164 (259)
Q Consensus        99 ~R~G~i~~~~~~~~~~~~--------------~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (259)
                        +|++++. +++++.+.              ......+.+++.  -.++.++++...+   ..-++...++.++..+++
T Consensus       229 --~g~l~v~-~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~--i~~l~~Al~~~~~---~gG~~~i~~~~~~l~~~l  300 (386)
T 3qm2_A          229 --LTLVIVR-EDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFA--WYLSGLVFKWLKA---QGGVAAMHKINQQKAELL  300 (386)
T ss_dssp             --EEEEEEE-GGGCSCCCTTSCGGGCHHHHHHC-------CCSH--HHHHHHHHHHHHH---HTHHHHHHHHHHHHHHHH
T ss_pred             --cEEEEEC-HHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHH--HHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHH
Confidence              8999988 46532111              011122323333  3344445543211   002566777888888888


Q ss_pred             HHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC--CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--
Q 024997          165 SKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--  240 (259)
Q Consensus       165 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--  240 (259)
                      .+.|++++.+... ..         ....++..+.+.+++  .+ +.+...|+++||.+++|...-   +.+|+|+..  
T Consensus       301 ~~~l~~~~~~~~~-~~---------~~~rs~~iv~f~~~~~~~~-~~~~~~L~~~gI~~~~g~~~~---~~iRiS~~~~~  366 (386)
T 3qm2_A          301 YGVIDNSDFYRND-VA---------QANRSRMNVPFQLADNTLD-KVFLEESFAAGLHALKGHRVV---GGMRASIYNAM  366 (386)
T ss_dssp             HHHHHTCSSEECC-BC---------GGGBCSSEEEEEESSGGGH-HHHHHHHHHTTEECCBCCTTT---CSEEEECCTTS
T ss_pred             HHHHHHCCCcccC-CC---------HHHcCceEEEEECCCcccc-HHHHHHHHHCCCEEeCCCCCc---CeEEEEcCCCC
Confidence            8888876421110 00         012334455666663  23 344445778999998876542   459999976  


Q ss_pred             ChhhHHHHHHHHHHHhhh
Q 024997          241 SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       241 ~~~~~~~~~~~l~~~l~~  258 (259)
                      +.++++.+++.|+++.++
T Consensus       367 t~edId~l~~~l~~~~~~  384 (386)
T 3qm2_A          367 PIEGVKALTDFMIDFERR  384 (386)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            899999999999998764

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.29  E-value=7e-12  Score=117.52  Aligned_cols=198  Identities=15%  Similarity=0.148  Sum_probs=120.6

Q ss_pred             CceEEEEcCC--CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeEEEeccccccCCC
Q 024997           35 THLVEFVTAP--NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEELMIFTISKLTGHA   97 (259)
Q Consensus        35 ~~~~i~i~~p--~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i~~~S~SK~~g~~   97 (259)
                      ++.+ |+..|  ++..|.+.         .++|++||+++|+||++  |+.-...+.    +..+ +  +.++||.++ .
T Consensus       594 ~iaa-vi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~P-D--iitlsK~L~-g  668 (831)
T 4a0g_A          594 HVGA-LIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKP-D--IACFAKLLT-G  668 (831)
T ss_dssp             EEEE-EEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCC-S--EEEECGGGG-T
T ss_pred             cEEE-EEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCC-c--EEEEecccc-c
Confidence            3555 55556  67777665         28999999999999998  422111111    2222 2  348999997 5


Q ss_pred             c-ceEEEEEecCHHHHHHHHHh------hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-HHHHHHHHH
Q 024997           98 G-SRFGWAVIKDEAVYQRMSAY------ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKR-WENLSKIIS  169 (259)
Q Consensus        98 G-~R~G~i~~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~  169 (259)
                      | +++|+++++ +++.+.+...      ....+++.+++.++++.+.|+...++...+.+.+..+.+++. .+.+.+.++
T Consensus       669 G~~Plgav~~~-~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~  747 (831)
T 4a0g_A          669 GMVPLAVTLAT-DAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQIS  747 (831)
T ss_dssp             TSSCCEEEEEC-HHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHH
T ss_pred             CccCcEEEEEC-HHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7 899999999 7999987642      134568889999999998888653221111111111111110 112333444


Q ss_pred             hcCCCccccccccccccceeeCCCCCeeEEEecCCC---------chHHHHHHHHHcCeeeecCCcccCCCCeEEEEe--
Q 024997          170 LSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---------EDKDCYGILKAAKIIGREGKKFRAEARFVRLSL--  238 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~--  238 (259)
                      +.+.             +..+... |.+..+.+...         ....+...+.++||.++|+      .+.+||+.  
T Consensus       748 ~~~~-------------v~~vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~------g~~lrl~pp~  807 (831)
T 4a0g_A          748 SHSA-------------VQRVVVI-GTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPL------GNVIYLMCGP  807 (831)
T ss_dssp             HSTT-------------EEEEEEE-TTEEEEEEC---------CHHHHHHHHHHHHTTEECCCB------TTEEEEECCT
T ss_pred             hCCC-------------ceeEeec-ccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEec------CCEEEEECCC
Confidence            4432             2233333 33344444211         1233444555789999973      27899995  


Q ss_pred             ecChhhHHHHHHHHHHHhhh
Q 024997          239 LKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       239 ~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ..+++++++++++|.+++++
T Consensus       808 ~~t~e~id~~~~~l~~~l~~  827 (831)
T 4a0g_A          808 CTSPEICRRLLTKLYKRLGE  827 (831)
T ss_dssp             TCCHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHHH
Confidence            34999999999999998864

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.19  E-value=1.7e-10  Score=101.27  Aligned_cols=202  Identities=13%  Similarity=0.009  Sum_probs=123.3

Q ss_pred             CceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----C-CCCCeEEEeccccccCCC
Q 024997           35 THLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----A-PADEELMIFTISKLTGHA   97 (259)
Q Consensus        35 ~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~-~~~~~i~~~S~SK~~g~~   97 (259)
                      +..+ +|..| +.-.|.+.         .++|+++|+++|.||++  |+.....+.    + .+|    +-+++|.+| .
T Consensus       226 ~iAA-vivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PD----ivt~gK~lg-g  299 (456)
T 4atq_A          226 QVAA-IIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPD----IITMAKGIA-G  299 (456)
T ss_dssp             GEEE-EEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCS----EEEECGGGG-T
T ss_pred             ceEE-EEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCc----hhhhhhccc-C
Confidence            4556 55555 33334333         39999999999999998  422111111    1 222    557889997 8


Q ss_pred             cceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 024997           98 GSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQ  177 (259)
Q Consensus        98 G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  177 (259)
                      |+.+|.+++. +++.+.+.......+++.+++.-+++.+.|+...++   +.    .++.++.-+++.+.|+++.    .
T Consensus       300 g~P~~av~~~-~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~~---~l----~~~~~~~g~~l~~~L~~l~----~  367 (456)
T 4atq_A          300 GLPLSAITGR-ADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQH---DL----NGRARHIEELALGKLRELA----A  367 (456)
T ss_dssp             TSSCEEEEEE-HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHT---TH----HHHHHHHHHHHHHHHHHHH----H
T ss_pred             cCCceeeEec-HHHHhcccccCCCCCCCCChHHHHhhHHHHHHHhhc---cH----HHHHHHHHHHHHHHHHHHH----H
Confidence            8999999999 799988877666778999999999999998865322   22    3334444444444444332    1


Q ss_pred             cccccccccceeeCCCCCeeEEEecCCC-----c---hHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHH
Q 024997          178 EIAPQYCTYFKKIRPPSPAYAWVKCERE-----E---DKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDL  247 (259)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~  247 (259)
                      .++....+.+..+... |+++-+++...     +   ...+...+.++|+.+.+.   +...+.+||+..  .+++++++
T Consensus       368 ~~~~~~~~~v~~VRG~-Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~---g~~~~~irl~PpL~it~~~id~  443 (456)
T 4atq_A          368 ELSAGGGSVVGDIRGR-GAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTC---GTYGNVIRLLPPLVISDELLID  443 (456)
T ss_dssp             HCC-----CEEEEEEE-TTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEE---CTTSCEEEECCCTTCCHHHHHH
T ss_pred             hcccccCCceEEeeec-ceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEec---CCCCCEEEEECCCCCCHHHHHH
Confidence            1111111112222333 33444444221     1   233444455789998863   233478999863  38999999


Q ss_pred             HHHHHHHHhhh
Q 024997          248 LLHRLDELISK  258 (259)
Q Consensus       248 ~~~~l~~~l~~  258 (259)
                      ++++|.+.|+.
T Consensus       444 ~l~~l~~al~a  454 (456)
T 4atq_A          444 GLEVLAAAIKA  454 (456)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.16  E-value=1.4e-10  Score=101.58  Aligned_cols=204  Identities=15%  Similarity=0.119  Sum_probs=123.4

Q ss_pred             cChhhhcccCC---CCceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeecccc---CCCCCC--CCCCCCCe
Q 024997           23 GEANLWGNASS---DTHLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAYF---WPHFAP--IPAPADEE   84 (259)
Q Consensus        23 ~d~~~l~~~~~---~~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y~---~~~~~~--~~~~~~~~   84 (259)
                      .|.+.+++.+.   +++.+ ||..| ....|.+.         .++|+++|+++|.||++-   +..+..  ..-.+|  
T Consensus       205 nd~~~l~~~l~~~~~~iAa-vIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tGR~G~~~a~e~~gv~PD--  281 (454)
T 4ao9_A          205 NDAQTARAQIERHGPEIAV-VLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTSRLAPHGLANKLGIRSD--  281 (454)
T ss_dssp             TCHHHHHHHHHHTGGGEEE-EEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGGGGSTTCHHHHHTCCCS--
T ss_pred             chHHHHHHHHhhcCCceEE-EEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcCCCccccchhccCCCCc--
Confidence            35566777662   35666 44455 44455544         289999999999999982   111100  001222  


Q ss_pred             EEEeccccccCCCcceEEEEEecCHHHHHHHHHh----hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 024997           85 LMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAY----ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKR  160 (259)
Q Consensus        85 i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  160 (259)
                        +-+++|.+| .|+.+|.+.+. +++.+.+...    ....+++.+++..+++.+.|+..   ..+    +..++++++
T Consensus       282 --i~t~gK~lg-gG~Piga~~~~-~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l---~~~----~~~~~~~~~  350 (454)
T 4ao9_A          282 --LTTLGKYIG-GGMSFGAFGGR-ADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKL---FTP----EAAGALAER  350 (454)
T ss_dssp             --EEEEEGGGG-TTSSCEEEEEC-HHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHT---SCH----HHHHHHHHH
T ss_pred             --EEEeccccC-CCCcceeeeeH-HHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHH---hcc----ChhHHHHHH
Confidence              458999998 78999999999 7999877542    23356778899999998888864   122    335556666


Q ss_pred             HHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-----------Cch----HHHHHHHHHcCeeeecCC
Q 024997          161 WENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-----------EED----KDCYGILKAAKIIGREGK  225 (259)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~----~~~~~ll~~~gi~~~~g~  225 (259)
                      -+++.+.|+++..    ..+   .  ...+...|.+ +-+.+..           .+.    .++..++ ++||.+.|  
T Consensus       351 g~~l~~~L~~l~~----~~~---~--~~~vrg~G~m-~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll-~~Gv~~~p--  417 (454)
T 4ao9_A          351 GEALRARLNALCA----NEG---V--AMQFTGIGSL-MNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLL-NEDIYSSP--  417 (454)
T ss_dssp             HHHHHHHHHHHHH----HHT---B--SCEEEEETTE-EEEESCCSCCCSGGGGTTCCHHHHHHHHHHHH-HTTEECCT--
T ss_pred             HHHHHHHHHHHHh----hCC---C--CEEEeeeceE-EEEEEecCCCCCHHHHHhhhHHHHHHHHHHHH-HCCEEEcC--
Confidence            6666666654320    000   0  1111222222 1222211           111    2333444 67999876  


Q ss_pred             cccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          226 KFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       226 ~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                           .+.+.++...++++++++++++++++++
T Consensus       418 -----~~~~~~s~~~T~~dId~~l~al~~~l~~  445 (454)
T 4ao9_A          418 -----RGFVVLSLPLTDADIDRYVAAIGSFIGG  445 (454)
T ss_dssp             -----TCEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -----CCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence                 2445666666999999999999999874

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.07  E-value=8e-09  Score=94.97  Aligned_cols=161  Identities=11%  Similarity=0.001  Sum_probs=98.1

Q ss_pred             CCcccchhhhhhccCccc-------ccc----c-----ChhhhcccCC--CCce---EEEEcCCCCCChhhH-----HHh
Q 024997            2 PFYPLYQEQTDYFESVDY-------KFE----G-----EANLWGNASS--DTHL---VEFVTAPNNPDGQMN-----KAV   55 (259)
Q Consensus         2 P~y~~~~~~~~~~g~~~~-------~~~----~-----d~~~l~~~~~--~~~~---~i~i~~p~NPtG~~~-----~~l   55 (259)
                      |+|..+....++.|+.+.       .|.    +     |++.|++.+.  ++++   ++++++| ||+|.++     .++
T Consensus       243 ~~H~S~~~~l~lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~el  321 (715)
T 3n75_A          243 NCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKT  321 (715)
T ss_dssp             SCCHHHHHHHHHSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHH
T ss_pred             CccHHHHHHHHHcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHH
Confidence            567777777777777652       233    2     7888998883  3334   7899999 9999998     267


Q ss_pred             hcCCCcEEEeecccc-----CCCCC---CCCC--CCCCe-EEEeccccccCCCcc-eEEEEEecCHHH-HHHHHHhhhhh
Q 024997           56 LKGPYAKSIYDHAYF-----WPHFA---PIPA--PADEE-LMIFTISKLTGHAGS-RFGWAVIKDEAV-YQRMSAYISLN  122 (259)
Q Consensus        56 a~~~~~~vi~De~y~-----~~~~~---~~~~--~~~~~-i~~~S~SK~~g~~G~-R~G~i~~~~~~~-~~~~~~~~~~~  122 (259)
                      |++++  +++||+|.     .+...   .+..  ..+.+ ++++|+||+++.  + ..|++++++ ++ .+.+.......
T Consensus       322 a~~~~--livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~g--ltqgs~i~v~~-~i~~~~~~~~~~~~  396 (715)
T 3n75_A          322 LDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA--FSQASMIHVKG-DVNEETFNEAYMMH  396 (715)
T ss_dssp             CCCSE--EEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSC--CTTCEEEEEES-CCCHHHHHHHHHHT
T ss_pred             hCcCc--EEEccccccccccCCccccccccccCcCCCEEEEEEecccccccC--CCCeeEEEeCc-hhhHHHHHHHHHhh
Confidence            77663  78999982     22111   1211  12443 569999999863  2 248888874 42 22344333322


Q ss_pred             -cCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcC
Q 024997          123 -TMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSN  172 (259)
Q Consensus       123 -~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (259)
                       +.+++.+..++...+++...    ...-.++++++.++.+.+++.|++++
T Consensus       397 ~STSpsy~~~AsldaA~~~~~----~~~g~~~~~~l~~~a~~~r~~L~~i~  443 (715)
T 3n75_A          397 TTTSPHYGIVASTETAAAMMK----GNAGKRLINGSIERAIKFRKEIKRLR  443 (715)
T ss_dssp             SCSSCCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHHHHHHH----hhccHHHHHHHHHHHHHHHHHHHHhh
Confidence             34566655555444544220    01233456777788888888887765

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.01  E-value=4.9e-09  Score=92.40  Aligned_cols=175  Identities=14%  Similarity=0.099  Sum_probs=112.5

Q ss_pred             HhhcCCCcEEEeeccc--cCCCCCCCC----C-CCCCeEEEeccccccCCCc-ceEEEEEecCHHHHHHHHHhh------
Q 024997           54 AVLKGPYAKSIYDHAY--FWPHFAPIP----A-PADEELMIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAYI------  119 (259)
Q Consensus        54 ~la~~~~~~vi~De~y--~~~~~~~~~----~-~~~~~i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~~------  119 (259)
                      ++|+++|+++|.||++  |+.-...+.    + .+|    +-+++|.++ .| +.+|.+++. +++.+.+....      
T Consensus       264 ~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PD----i~t~~K~l~-gG~~Pl~av~~~-~~i~~~~~~~~~~~~~~  337 (473)
T 4e3q_A          264 PILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPD----AIISSKNLT-AGFFPMGAVILG-PELSKRLETAIEAIEEF  337 (473)
T ss_dssp             HHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCS----EEEECGGGG-TTSSCCEEEEEC-HHHHHHHHHHHHHHSCC
T ss_pred             HHhcccceEEeccCccccCCcccchhHHHhcCCCCC----hHHhccccc-CCCCCccccccc-HHHHHHhcccccccccc
Confidence            8999999999999999  532221111    1 223    557899997 56 899999999 69998886532      


Q ss_pred             -hhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeE
Q 024997          120 -SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYA  198 (259)
Q Consensus       120 -~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (259)
                       ...+++.+++.-+++.+.|+...+   ++.    .++.++.-+++.+.|+++...     +     .+..+...| ++.
T Consensus       338 ~hg~T~~Gnpla~Aaala~L~~i~~---~~l----~~~~~~~g~~l~~~L~~l~~~-----~-----~v~~vRG~G-l~~  399 (473)
T 4e3q_A          338 PHGFTASGHPVGCAIALKAIDVVMN---EGL----AENVRRLAPRFEERLKHIAER-----P-----NIGEYRGIG-FMW  399 (473)
T ss_dssp             CCCCTTTTCHHHHHHHHHHHHHHHH---SSH----HHHHHHHHHHHHHHHHHHTTS-----T-----TEEEEEEET-TEE
T ss_pred             ccCCCCCCCcchhhhhhhhhhhhcc---ccH----HHHHHHHHHHHHHHHHHHhcC-----C-----CeeEEeecc-eEE
Confidence             345778899988888888886532   232    445555666666666655321     0     022223222 222


Q ss_pred             EEecCC-C--------c---hHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          199 WVKCER-E--------E---DKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       199 ~~~~~~-~--------~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                      -+.+.. .        +   ...+...+.++|+.++|.     + +.+|++..  .++++++++++++.+.+++
T Consensus       400 gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-----g-~~i~l~PPL~it~~eid~~~~~l~~al~~  467 (473)
T 4e3q_A          400 ALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL-----G-QSVVLCPPFILTEAQMDEMFDKLEKALDK  467 (473)
T ss_dssp             EEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE-----T-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCccccccccccHHHHHHHHHHHHHCCcEEEec-----C-CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            333211 0        1   234555555789999872     2 67888753  3899999999999888764

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=98.90  E-value=9.5e-08  Score=82.40  Aligned_cols=213  Identities=14%  Similarity=0.086  Sum_probs=141.2

Q ss_pred             cccChhhhcccCC-CCceEEEEcCCCCCChhhH---HHhhcCCCcEEEeecccc-----CC-CCCCCCCCCCCeEEEecc
Q 024997           21 FEGEANLWGNASS-DTHLVEFVTAPNNPDGQMN---KAVLKGPYAKSIYDHAYF-----WP-HFAPIPAPADEELMIFTI   90 (259)
Q Consensus        21 ~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~---~~la~~~~~~vi~De~y~-----~~-~~~~~~~~~~~~i~~~S~   90 (259)
                      ..+|.+++++... .++++|++-.=.+|-=.-+   .++|.+.|+++++|-+++     +. ...+++   ...++..|.
T Consensus       188 ~~IDyd~~~~~A~~~kPklIi~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~---~ADvVTtTT  264 (490)
T 3ou5_A          188 GLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK---HADIVTTTT  264 (490)
T ss_dssp             TEECHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG---TCSEEEEES
T ss_pred             CcccHHHHHHHHhhcCCCeEEECCccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccc---cceEEeccc
Confidence            3588888888874 4899966655556665555   489999999999999994     21 222232   247889999


Q ss_pred             ccccCCCcceEEEEEecCH--------------HHHHHHHHhhhhhcCCCCHHHHHHHHHH-HHHHHhcCCcchHHHHHH
Q 024997           91 SKLTGHAGSRFGWAVIKDE--------------AVYQRMSAYISLNTMGVSRECQLRAFKL-LKVVLEDGGNNIFEFGYN  155 (259)
Q Consensus        91 SK~~g~~G~R~G~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~q~~~~~~-l~~~~~~~~~~~~~~~~~  155 (259)
                      .|+|  .|=|-|.|.+.+.              ++.+++....-+...+.+.....++.++ +.+.    ....+.+..+
T Consensus       265 HKTL--rGPrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea----~~p~fk~Ya~  338 (490)
T 3ou5_A          265 HKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQA----CTPMFREYSL  338 (490)
T ss_dssp             SSTT--CSCSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH----HSHHHHHHHH
T ss_pred             cccc--cCCCceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHH----HhHhHHHHHH
Confidence            9998  3556699987731              4666777665555556555444443332 3322    2335667788


Q ss_pred             HHHHHHHHHHHHHHhcCCCccccccccccccceeeCC-CCCeeEEEecCCC--chHHHHHHHHHcCeeee----cCCccc
Q 024997          156 TMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP-PSPAYAWVKCERE--EDKDCYGILKAAKIIGR----EGKKFR  228 (259)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~----~g~~f~  228 (259)
                      ++.+|.+.|.+.|.+.+              ++.+.. ...=.+++++...  +...+...|++.||.+.    |++.-.
T Consensus       339 qVv~NAkaLA~~L~~~G--------------~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp  404 (490)
T 3ou5_A          339 QVLKNARAMADALLERG--------------YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSA  404 (490)
T ss_dssp             HHHHHHHHHHHHHHHTT--------------CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCS
T ss_pred             HHHHHHHHHHHHHHhCC--------------CeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCC
Confidence            89999999999998866              332221 1122566777543  57889999999999764    544211


Q ss_pred             CCCCeEEEEe------ecChhhHHHHHHHHHHHh
Q 024997          229 AEARFVRLSL------LKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       229 ~~~~~~Ris~------~~~~~~~~~~~~~l~~~l  256 (259)
                      ..+..+||+.      +..++++++..+-|.+++
T Consensus       405 ~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l  438 (490)
T 3ou5_A          405 ITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGV  438 (490)
T ss_dssp             SSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            1356899997      226788888877777665

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=98.69  E-value=4.7e-07  Score=78.44  Aligned_cols=219  Identities=12%  Similarity=0.077  Sum_probs=125.6

Q ss_pred             cccChhhhcccCC---CCceEEEEcCC-CCCChhhH-----HHhhcCCCcEEEeeccccCCC--CCCCC----CCCCCeE
Q 024997           21 FEGEANLWGNASS---DTHLVEFVTAP-NNPDGQMN-----KAVLKGPYAKSIYDHAYFWPH--FAPIP----APADEEL   85 (259)
Q Consensus        21 ~~~d~~~l~~~~~---~~~~~i~i~~p-~NPtG~~~-----~~la~~~~~~vi~De~y~~~~--~~~~~----~~~~~~i   85 (259)
                      ..+|++.+++++.   .+..++++++| .|-.|.+-     +++|+++|+++++|+||+...  ...++    ....-++
T Consensus       198 ~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~  277 (501)
T 3hl2_A          198 LRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDA  277 (501)
T ss_dssp             EEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcE
Confidence            5788899998883   23444444444 45333322     499999999999999993111  11111    1123578


Q ss_pred             EEeccccccCCC-cceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 024997           86 MIFTISKLTGHA-GSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENL  164 (259)
Q Consensus        86 ~~~S~SK~~g~~-G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (259)
                      ++.|..|.+-++ |  -|.+...++++.+++..... ... .+.+.....+..+.-     +.+-+.+..++-.++.+.+
T Consensus       278 vVqS~HK~llvpIG--G~ii~~~d~e~l~~~~~~yP-Gr~-S~Spsldl~~tLL~l-----Gr~Gy~~ll~e~~ela~~L  348 (501)
T 3hl2_A          278 FVQSLDKNFMVPVG--GAIIAGFNDSFIQEISKMYP-GRA-SASPSLDVLITLLSL-----GSNGYKKLLKERKEMFSYL  348 (501)
T ss_dssp             EEEEHHHHHCCCSS--CEEEEESCHHHHHHHHHTSC-SCB-CSHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred             EEecccccceeecC--ceEEEeCCHHHHHHHHHhCC-CCC-CCcHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence            999999998544 3  24444566788887644221 112 233333233333332     2234566777777888888


Q ss_pred             HHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC------chHHHHHHHHHcCee----eecCC---------
Q 024997          165 SKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE------EDKDCYGILKAAKII----GREGK---------  225 (259)
Q Consensus       165 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~gi~----~~~g~---------  225 (259)
                      .+.|+++..    ...+..   .  ..+...+-+.+.+...      +...+-.+|=..+|.    |.+|.         
T Consensus       349 ~~~L~~la~----~~ge~l---l--~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f  419 (501)
T 3hl2_A          349 SNQIKKLSE----AYNERL---L--HTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTF  419 (501)
T ss_dssp             HHHHHHHHH----TTTCCB---C--CCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEE
T ss_pred             HHHHHHHHH----hcChhh---c--CCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCeee
Confidence            888887653    111100   0  1344555566666543      122333334345662    44555         


Q ss_pred             -cccC-----CCCeEEEEe--ecChhhHHHHHHHHHHHhh
Q 024997          226 -KFRA-----EARFVRLSL--LKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       226 -~f~~-----~~~~~Ris~--~~~~~~~~~~~~~l~~~l~  257 (259)
                       .|+.     +-.|+-++-  +.+.++++..+++|.+.+.
T Consensus       420 ~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~  459 (501)
T 3hl2_A          420 RGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLK  459 (501)
T ss_dssp             SSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence             5552     345666664  3499999999999998875

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=98.22  E-value=2.2e-05  Score=68.25  Aligned_cols=144  Identities=9%  Similarity=-0.001  Sum_probs=84.4

Q ss_pred             cccChhhhcccCCC---CceEEEEcCCC-CCChhhH-----HHhhcCCCcEEEeeccccCC--CCCCCC----CCCCCeE
Q 024997           21 FEGEANLWGNASSD---THLVEFVTAPN-NPDGQMN-----KAVLKGPYAKSIYDHAYFWP--HFAPIP----APADEEL   85 (259)
Q Consensus        21 ~~~d~~~l~~~~~~---~~~~i~i~~p~-NPtG~~~-----~~la~~~~~~vi~De~y~~~--~~~~~~----~~~~~~i   85 (259)
                      ..+|++.|++++.+   +.+++|+.+|+ +.+|.+-     +++|+++|+++++|+||...  ....++    ....-+.
T Consensus       180 ~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~  259 (450)
T 3bc8_A          180 LRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDA  259 (450)
T ss_dssp             EECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCE
T ss_pred             CCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhcccCCCE
Confidence            57889999999832   34566777775 5566543     49999999999999999311  111111    1124477


Q ss_pred             EEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 024997           86 MIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLS  165 (259)
Q Consensus        86 ~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (259)
                      ++.|..|.++.+ ...+++...+++..+++.....  ....+.+........+..     +.+-+.+..++..++.+.+.
T Consensus       260 ~v~S~HK~l~a~-~~~~~l~~rd~~~~~~~~~~~~--g~~s~SpsL~l~~~l~~~-----G~~g~~~~i~~~~~~a~~l~  331 (450)
T 3bc8_A          260 FVQSLDKNFMVP-VGGAIIAGFNEPFIQDISKMYP--GRASASPSLDVLITLLSL-----GCSGYRKLLKERKEMFVYLS  331 (450)
T ss_dssp             EEEEHHHHHSCC-SSCEEEEESCHHHHHHHHHHSC--SCBCSHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCccCCCch-hccEEEEecCHHHHHHHHHHhh--cCCcccHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence            889999998632 2256666655777776654321  112233333322222221     22234444455566667777


Q ss_pred             HHHHhcC
Q 024997          166 KIISLSN  172 (259)
Q Consensus       166 ~~l~~~~  172 (259)
                      +.+++++
T Consensus       332 ~~l~~~~  338 (450)
T 3bc8_A          332 TQLKKLA  338 (450)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhH
Confidence            7777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	259
d2hoxa1	425	c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ	9e-64
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	7e-09
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	1e-08
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	3e-07
d1xi9a_	395	c.67.1.1 (A:) Putative alanine aminotransferase {P	2e-05
d1o4sa_	375	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	1e-04
d1v2da_	368	c.67.1.1 (A:) Glutamine aminotransferase {Thermus	0.002

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

 Score =  203 bits (517), Expect = 9e-64
 Identities = 125/265 (47%), Positives = 183/265 (69%), Gaps = 9/265 (3%)

Query: 2   PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYA 61
           PFYP+++EQT YF+   Y + G A  + N S+    +E VT+PNNP+G +  AV+KG   
Sbjct: 163 PFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKG--C 220

Query: 62  KSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL 121
           KSIYD  Y+WPH+ PI   ADE++++FT+SK TGH+GSRFGWA+IKDE+VY  +  Y++ 
Sbjct: 221 KSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTK 280

Query: 122 NTMGVSRECQLRAFKLLKVVLED------GGNNIFEFGYNTMKKRWENLSKIISLSNRFS 175
           NT G  RE QLR+ K+LK V+           ++  FG+  +++RW N++ ++  S+RFS
Sbjct: 281 NTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFS 340

Query: 176 LQEI-APQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFV 234
            QE+   +YC YF+++RPPSP+YAWVKCE EEDKDCY   +  +I  + G  F A +R+V
Sbjct: 341 YQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYV 400

Query: 235 RLSLLKSQDDFDLLLHRLDELISKE 259
           RLSL+K+QDDFD L++ L +++  +
Sbjct: 401 RLSLIKTQDDFDQLMYYLKDMVKAK 425

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score = 53.2 bits (127), Expect = 7e-09
 Identities = 44/278 (15%), Positives = 74/278 (26%), Gaps = 41/278 (14%)

Query: 2   PFYPLYQEQTDYFESVDYKFEGEANLWG--------NASSDTHLVEFVTAPNNPDGQMN- 52
           P++  Y E   +   V  + E                A +       V +PNNP G +  
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYP 182

Query: 53  ----KAVLKGPYAKSIY--------DHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSR 100
               +A+ +       Y           Y   HF+P     +  L +   +K     G R
Sbjct: 183 KEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWR 242

Query: 101 FGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKR 160
            G+A    E +    S      T   +                              +  
Sbjct: 243 IGYACGPKEVIKAMASVSRQSTTSPDTIAQW-----------------ATLEALTNQEAS 285

Query: 161 WENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAK 218
              +        R     +        K +RP    Y  +       ++      L  A 
Sbjct: 286 RAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAG 345

Query: 219 IIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELI 256
           +    G  F A    VRLS   S+++    L R   ++
Sbjct: 346 VAVVPGTDFAAF-GHVRLSYATSEENLRKALERFARVL 382

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score = 52.9 bits (126), Expect = 1e-08
 Identities = 41/283 (14%), Positives = 78/283 (27%), Gaps = 48/283 (16%)

Query: 2   PFYPLYQEQTDYFE-SVDYKFEGEANLWG-------NASSDTHLVEFVTAPNNPDGQMNK 53
           PF+  Y E     E +           +         A +    +     P+NP G +  
Sbjct: 122 PFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYT 181

Query: 54  -----------------AVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGH 96
                             +    Y K +YD A      A  P   +  ++    +K    
Sbjct: 182 PDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAM 241

Query: 97  AGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNT 156
            G R G+       V +  +     +T  V    Q        +   +   +  +     
Sbjct: 242 TGWRVGFLAGPVPLV-KAATKIQGHSTSNVCTFAQ-----YGAIAAYENSQDCVQEMLAA 295

Query: 157 MKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKD---CYGI 213
             +R   +          +L  +    C      +P    Y +    +        C  +
Sbjct: 296 FAERRRYMLD--------ALNAMPGLECP-----KPDGAFYMFPSIAKTGRSSLDFCSEL 342

Query: 214 LKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELI 256
           L   ++    G  F A+   +RLS     D     + RL++ +
Sbjct: 343 LDQHQVATVPGAAFGAD-DCIRLSYATDLDTIKRGMERLEKFL 384

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 48.7 bits (115), Expect = 3e-07
 Identities = 32/239 (13%), Positives = 69/239 (28%), Gaps = 38/239 (15%)

Query: 40  FVTAPNNPDGQMNK--------AVLKGPYAKSIYDHAYFW--------PHFAPIPAPADE 83
            + +P NP G +            +       I D  Y             A +    + 
Sbjct: 164 IINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFER 223

Query: 84  ELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLE 143
            + +   SK     G R G+       + + +   +   T  V+      A  L      
Sbjct: 224 TITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKAL------ 277

Query: 144 DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCE 203
              +         M+K +          +R                ++P    Y + +  
Sbjct: 278 --KDERSWKAVEEMRKEY----------DRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIR 325

Query: 204 REEDKD---CYGILKAAKIIGREGKKF-RAEARFVRLSLLKSQDDFDLLLHRLDELISK 258
                       +LK A++    G  F +A   +VR+S   + +  +  + R++ ++ +
Sbjct: 326 DTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKE 384

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 30/203 (14%), Positives = 61/203 (30%), Gaps = 27/203 (13%)

Query: 65  YDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDE----AVYQRMSAYIS 120
                               +++  +SK+    G R G+    D     +  +     ++
Sbjct: 210 LMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLA 269

Query: 121 LNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIA 180
              +  +   Q  A   L      G  +  +     +K+R + + K         L EI 
Sbjct: 270 RIRLCPNTPAQFAAIAGL-----TGPMDYLKEYMKKLKERRDYIYKR--------LNEIP 316

Query: 181 PQYCTYFKKIRPPSPAYAWVKCEREEDKD----CYGILKAAKIIGREGKKF-RAEARFVR 235
               T     +P    Y + K E    K+       +L  A ++   G  F    A   R
Sbjct: 317 GISTT-----KPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFR 371

Query: 236 LSLLKSQDDFDLLLHRLDELISK 258
              L   +  +  + R ++ + +
Sbjct: 372 AVFLPPIEILEEAMDRFEKFMKE 394

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 187 FKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFD 246
            K + P    Y + K   ++ K C  +L+  K+    G  F     FVRLS   S +   
Sbjct: 305 VKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKP-GFVRLSFATSIERLT 363

Query: 247 LLLHRLDELIS 257
             L R+++ ++
Sbjct: 364 EALDRIEDFLN 374

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 6/73 (8%)

Query: 187 FKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAE---ARFVRLSLLKSQD 243
            +   P    +   +       D + +++ A++       F  E       R +  K+++
Sbjct: 299 LRVYVPEGTYFLMAELP---GWDAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEE 355

Query: 244 DFDLLLHRLDELI 256
           +  L L RL  ++
Sbjct: 356 ELHLALERLGRVV 368

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	100.0
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	100.0
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	100.0
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	100.0
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	100.0
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	100.0
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	100.0
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	100.0
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	100.0
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	100.0
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	100.0
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	100.0
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	100.0
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	100.0
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	100.0
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	100.0
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	100.0
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	100.0
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	100.0
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.98
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.97
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.97
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.97
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.97
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.96
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.93
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.74
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.71
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.7
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.7
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.69
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.67
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.67
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.66
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.66
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.65
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.65
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.65
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.63
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.62
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.6
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.58
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.55
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.53
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.5
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.44
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.42
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.41
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.34
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.3
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.3
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.29
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.29
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.28
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.26
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.21
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.2
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.18
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.17
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.16
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.1
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.09
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.09
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.08
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.08
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.06
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.03
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	98.99
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	98.93
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	98.91
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	98.91
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	98.87
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	98.87
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	98.85
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	98.82
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	98.79
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	98.76
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	98.75
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	98.69
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	98.64
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	98.35
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	98.26
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	97.91
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	97.02

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=100.00  E-value=2.6e-43  Score=304.91  Aligned_cols=257  Identities=47%  Similarity=0.939  Sum_probs=224.4

Q ss_pred             CCCcccchhhhhhccCcccccccChhhhcccCCCCceEEEEcCCCCCChhhHHHhhcCCCcEEEeeccccCCCCCCCCCC
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAYFWPHFAPIPAP   80 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~la~~~~~~vi~De~y~~~~~~~~~~~   80 (259)
                      .|+|+.|...++.++....+|.+|.+.+++.++++++++++||||||||.+  +-+...++.+|.||+|+++++.+++..
T Consensus       162 ~P~y~~Y~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ii~l~sPnNPtG~l--~~~v~~~~~~I~DEaY~~~~f~~~~~~  239 (425)
T d2hoxa1         162 APFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLL--RHAVIKGCKSIYDMVYYWPHYTPIKYK  239 (425)
T ss_dssp             SSCCHHHHHHHHHSCBTTEEEEEEGGGGTTCSCGGGEEEEEESSCTTTCCC--CCCSSTTCEEEEECTTCSTTTSCCCSC
T ss_pred             cCccccHHHHHHHcCCCCCccCCCHHHHHhhCCCCceEEEEECCCCCCcch--hhhhhhCCEEEEeccccCccccchhhh
Confidence            499999999999999999999999999999999999999999999999987  345567899999999998888888888


Q ss_pred             CCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHh------cCCcchHHHHH
Q 024997           81 ADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLE------DGGNNIFEFGY  154 (259)
Q Consensus        81 ~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~------~~~~~~~~~~~  154 (259)
                      .+++|+++||||+||++|||+||++++++.+.+++..+....+.+++.+.|.++..+++....      ....++++..+
T Consensus       240 ~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~  319 (425)
T d2hoxa1         240 ADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGF  319 (425)
T ss_dssp             BCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHH
T ss_pred             cCCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999998888788999999998888899999999999988875321      12456788889


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcccccc-ccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCe
Q 024997          155 NTMKKRWENLSKIISLSNRFSLQEIA-PQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARF  233 (259)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~  233 (259)
                      +.++++++.+.+.|++.+.+.+..++ +..++|+....+..+.|+|+++...+.+++.++|+++||.++||+.|+.++++
T Consensus       320 ~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~~~~~~lL~e~gI~v~pGs~FG~~~~y  399 (425)
T d2hoxa1         320 KKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRY  399 (425)
T ss_dssp             HHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTE
T ss_pred             HHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCChHHHHHHHHHhCCEEEEechhcCCCCCE
Confidence            99999999999999998876665554 34456666677788889999987666677888899999999999999977799


Q ss_pred             EEEEeecChhhHHHHHHHHHHHhhhC
Q 024997          234 VRLSLLKSQDDFDLLLHRLDELISKE  259 (259)
Q Consensus       234 ~Ris~~~~~~~~~~~~~~l~~~l~~~  259 (259)
                      +|||++.++++++++++||+++++.+
T Consensus       400 vRisl~~~~e~ld~~l~rL~~~v~ak  425 (425)
T d2hoxa1         400 VRLSLIKTQDDFDQLMYYLKDMVKAK  425 (425)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHHHTCC
T ss_pred             EEEEecCCHHHHHHHHHHHHHHHhcC
Confidence            99999889999999999999999875

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=100.00  E-value=4.1e-42  Score=295.98  Aligned_cols=238  Identities=16%  Similarity=0.205  Sum_probs=204.6

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|...        .+|.+|+++|++.+++++++++++|||||||.+++        ++|+++|++||
T Consensus       121 ~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI  200 (388)
T d1j32a_         121 APFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVL  200 (388)
T ss_dssp             SSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             CCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEE
Confidence            599999999999887754        35789999999999999999999999999999983        78999999999


Q ss_pred             eeccc----cC-CCCCCCC----CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 024997           65 YDHAY----FW-PHFAPIP----APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAF  135 (259)
Q Consensus        65 ~De~y----~~-~~~~~~~----~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~  135 (259)
                      +||+|    |. +...++.    ...+++++++||||.|+++|+|+||++++ +++++.+.+.......+++.+.|.++.
T Consensus       201 ~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~a~~  279 (388)
T d1j32a_         201 SDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGP-VPLVKAATKIQGHSTSNVCTFAQYGAI  279 (388)
T ss_dssp             EECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECC-HHHHHHHHHHHHTTTCSCCHHHHHHHH
T ss_pred             chhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEEC-HHHHHHHHHhhhhccccccHHHHHHHh
Confidence            99999    22 2233332    12357999999999999999999999999 799999988888778889999999888


Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---chHHHHH
Q 024997          136 KLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---EDKDCYG  212 (259)
Q Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  212 (259)
                      ..+.     ..++++++.++.++++++.+.+.|+++++             +.+..|++|+|+|++++..   +.+++.+
T Consensus       280 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-------------~~~~~p~gg~~l~~~l~~~~~~~~~~~~~  341 (388)
T d1j32a_         280 AAYE-----NSQDCVQEMLAAFAERRRYMLDALNAMPG-------------LECPKPDGAFYMFPSIAKTGRSSLDFCSE  341 (388)
T ss_dssp             HHHH-----SCSHHHHHHHHHHHHHHHHHHHHHHTCTT-------------CBCCCCCBTTEECCBCGGGTCCHHHHHHH
T ss_pred             hccc-----chHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CEecCCCceEEEEEECCCCCCCHHHHHHH
Confidence            8887     36778999999999999999999987654             5556899999999998753   3577788


Q ss_pred             HHHHcCeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          213 ILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       213 ll~~~gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      +++++||.++||+.|+. ++++|+|++.+.++++++++||+++++.
T Consensus       342 ll~~~gV~v~pG~~F~~-~~~~Rls~~~~~e~l~~al~rl~~~l~~  386 (388)
T d1j32a_         342 LLDQHQVATVPGAAFGA-DDCIRLSYATDLDTIKRGMERLEKFLHG  386 (388)
T ss_dssp             HHHHHCEECEEGGGGTC-TTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCEEEEeccccCC-CCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            89899999999999986 4899999988999999999999999863

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=3.4e-42  Score=296.38  Aligned_cols=240  Identities=17%  Similarity=0.201  Sum_probs=202.6

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|..+        .+|++|+++|++.+++++++++++|||||||.+++        ++|+++|++||
T Consensus       117 ~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi  196 (388)
T d1gdea_         117 TPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVI  196 (388)
T ss_dssp             ESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCccCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence            599999999999998875        35789999999999999999999999999999983        78999999999


Q ss_pred             eeccc--c--C-CCCC---CCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 024997           65 YDHAY--F--W-PHFA---PIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFK  136 (259)
Q Consensus        65 ~De~y--~--~-~~~~---~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~  136 (259)
                      +||+|  |  . ....   .+....+++|+++||||.||++|+|+||++++ +++++.+.........+++.+.|.++..
T Consensus       197 ~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (388)
T d1gdea_         197 SDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAP-SWIIERMVKFQMYNATCPVTFIQYAAAK  275 (388)
T ss_dssp             EECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECC-HHHHHHHHHHHHTTTCSCCHHHHHHHHH
T ss_pred             EEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEee-ccchhhhhhccccccccccccchhhHHH
Confidence            99999  2  1 2222   22245578999999999999999999999999 6999999998888889999999999988


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---chHHHHHH
Q 024997          137 LLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---EDKDCYGI  213 (259)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l  213 (259)
                      +++..   ....++...++.+++++..+.+.+...+              +.+..|++|+|+|++++..   +.+++..+
T Consensus       276 ~l~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------~~~~~p~gg~fl~~~l~~~~~~~~~~~~~l  338 (388)
T d1gdea_         276 ALKDE---RSWKAVEEMRKEYDRRRKLVWKRLNEMG--------------LPTVKPKGAFYIFPRIRDTGLTSKKFSELM  338 (388)
T ss_dssp             HHTCH---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--------------CCCCCCCBTTEECCBCGGGTCCHHHHHHHH
T ss_pred             HHhhc---cchhHHHHHHHHHHHhhhhhhhhhhhcc--------------ccccCCCceEEEEEECCCCCCCHHHHHHHH
Confidence            88631   1234567777888888888888888654              4556889999999998753   35667788


Q ss_pred             HHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          214 LKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       214 l~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ++++||.++||+.|+. +++++|||++.+.++++++++||++++++
T Consensus       339 l~e~gV~v~PG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~~l~e  384 (388)
T d1gdea_         339 LKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKE  384 (388)
T ss_dssp             HHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCEEEEechhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            8899999999999985 57899999988889999999999999986

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.4e-41  Score=292.14  Aligned_cols=238  Identities=20%  Similarity=0.263  Sum_probs=198.6

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|..+        .+|.+|++.+++.++++++++++||||||||.+++        ++|+++|++||
T Consensus       122 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii  201 (382)
T d1b5pa_         122 SPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLV  201 (382)
T ss_dssp             ESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEE
Confidence            599999999999998765        35788999999999999999999999999999993        78999999999


Q ss_pred             eeccc----cC-CCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q 024997           65 YDHAY----FW-PHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLK  139 (259)
Q Consensus        65 ~De~y----~~-~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~  139 (259)
                      +||+|    |. ....+.....+++++++|+||.|+++|+|+||++++ +++++.+.........+++.+.|.++...+.
T Consensus       202 ~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (382)
T d1b5pa_         202 SDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGP-KEVIKAMASVSRQSTTSPDTIAQWATLEALT  280 (382)
T ss_dssp             EECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECC-HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHH
T ss_pred             EEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHhheEEEEEC-HHHHHHHHHHHHhcccCcccccccccccccc
Confidence            99999    22 222233345678999999999999999999999999 7999999888887888889999988877775


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHc
Q 024997          140 VVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAA  217 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~  217 (259)
                      ...  ..+.++...++.++++++.+.+.++..+              +.++.|++|+|+|++++..  +...+.+.|.++
T Consensus       281 ~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~g--------------~~~~~p~gg~~~~~~~~~~~~~~~~~~~~l~e~  344 (382)
T d1b5pa_         281 NQE--ASRAFVEMAREAYRRRRDLLLEGLTALG--------------LKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEA  344 (382)
T ss_dssp             CHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------CCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHT
T ss_pred             ccc--chhHHHHHHHHHHHhhhhHHHHHHhhcC--------------CeEecCCceEEEeEeCCCCCCCHHHHHHHHHHC
Confidence            311  1344567778888888888888888755              5567899999999999654  466677777789


Q ss_pred             CeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          218 KIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       218 gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      ||.++||+.|+. .+++||+++.++++++++++||+++|
T Consensus       345 gV~v~PG~~F~~-~~~iRis~~~~~e~l~~al~rl~~~L  382 (382)
T d1b5pa_         345 GVAVVPGTDFAA-FGHVRLSYATSEENLRKALERFARVL  382 (382)
T ss_dssp             TEECEESGGGTC-TTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred             CEEEEeCcccCC-CCeEEEEEcCCHHHHHHHHHHHHHhC
Confidence            999999999986 48999999889999999999998875

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=5.8e-41  Score=289.42  Aligned_cols=240  Identities=17%  Similarity=0.231  Sum_probs=197.9

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++        .+|.+|++.+++.+.+++++++++|||||||.+++        ++|+++|++||
T Consensus       124 ~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii  203 (395)
T d1xi9a_         124 GPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVI  203 (395)
T ss_dssp             ESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEE
T ss_pred             CCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhcccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEE
Confidence            599999999999999865        35789999999999899999999999999999993        88999999999


Q ss_pred             eeccc----cCCCCCCCC--CCCCCeEEEeccccccCCCcceEEEEEecC-HHHHHHH---HHhhhhhcCCCCHHHHHHH
Q 024997           65 YDHAY----FWPHFAPIP--APADEELMIFTISKLTGHAGSRFGWAVIKD-EAVYQRM---SAYISLNTMGVSRECQLRA  134 (259)
Q Consensus        65 ~De~y----~~~~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~-~~~~~~~---~~~~~~~~~~~~~~~q~~~  134 (259)
                      +||+|    |.....+..  ...+++|+++||||.|+++|+|+||+++++ ...+..+   .........+++.+.|.++
T Consensus       204 ~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~  283 (395)
T d1xi9a_         204 SDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAA  283 (395)
T ss_dssp             EECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHH
T ss_pred             eccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHH
Confidence            99999    222221111  345689999999999999999999987653 1222222   2233345678889999999


Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC----chHHH
Q 024997          135 FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE----EDKDC  210 (259)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  210 (259)
                      ..++.     +.++++.+.++.++++++.+.+.|++++.             +.+..|++|+|+|++++..    +.+++
T Consensus       284 ~~~l~-----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-------------~~~~~p~gg~~~~~~l~~~~~~~~~~~~  345 (395)
T d1xi9a_         284 IAGLT-----GPMDYLKEYMKKLKERRDYIYKRLNEIPG-------------ISTTKPQGAFYIFPKIEVGPWKNDKEFV  345 (395)
T ss_dssp             HHHHH-----SCCHHHHHHHHHHHHHHHHHHHHHHTSTT-------------EECCCCCBSSEECCEECSCSCSSHHHHH
T ss_pred             HHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------ceecCCCeeEEEeEECCCCCCCCHHHHH
Confidence            88887     36779999999999999999999997653             4566899999999998753    45778


Q ss_pred             HHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          211 YGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       211 ~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      .++++++||.++||+.|+. +++++|||++.++++++++++||++++++
T Consensus       346 ~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~~~l~e  394 (395)
T d1xi9a_         346 LDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKE  394 (395)
T ss_dssp             HHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCEEEEcChhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            8999999999999999986 47899999988999999999999999986

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=100.00  E-value=5e-39  Score=279.18  Aligned_cols=243  Identities=14%  Similarity=0.180  Sum_probs=202.4

Q ss_pred             CCCcccchhhhhhccCccc----------------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------Hhh
Q 024997            1 MPFYPLYQEQTDYFESVDY----------------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVL   56 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~----------------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la   56 (259)
                      +|+|+.|...+...|.++.                .|..+.+.+.....+.++++++++||||||.+++        ++|
T Consensus       121 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a  200 (418)
T d2r5ea1         121 EPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLC  200 (418)
T ss_dssp             ESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhccccceecCCcCccccccccHHHHHHHhhhh
Confidence            5999999999999887752                2456667777777889999999999999999993        789


Q ss_pred             cCCCcEEEeeccc--c--CC-C---CCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCH
Q 024997           57 KGPYAKSIYDHAY--F--WP-H---FAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSR  128 (259)
Q Consensus        57 ~~~~~~vi~De~y--~--~~-~---~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~  128 (259)
                      +++|++||+||+|  +  .+ .   ...+.+..+++++++|+||.++++|+|+||++++ +++++.+.+.......++++
T Consensus       201 ~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~-~~~i~~~~~~~~~~~~~~~~  279 (418)
T d2r5ea1         201 KKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGP-EALLKNLQMVHQNCVYTCAT  279 (418)
T ss_dssp             HHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESC-HHHHHHHHHHHTTTTCSCCH
T ss_pred             hcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCccccccccc-chhhhhhhhccccccccccc
Confidence            9999999999999  2  22 1   2233356678999999999999999999999999 69999999988877888999


Q ss_pred             HHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-
Q 024997          129 ECQLRAFKLLKVVLE--DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-  205 (259)
Q Consensus       129 ~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  205 (259)
                      +.|.+++..+.....  ...+.++++.++.++++++.+.+.|++++              +.+..|+||+|+|++++.. 
T Consensus       280 ~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g--------------~~~~~P~gg~f~~~~~~~~~  345 (418)
T d2r5ea1         280 PIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVG--------------MNPTVPQGGYFMVADWSSLD  345 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHTT--------------CEEEECSBSSEEEEECGGGS
T ss_pred             chhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhcC--------------CcccCCCceeEEEEEccccc
Confidence            999888777754211  12467889999999999999999999865              6678999999999998532 


Q ss_pred             -------------chHHHHHHHHHcCeeeecCCcccC------CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          206 -------------EDKDCYGILKAAKIIGREGKKFRA------EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       206 -------------~~~~~~~ll~~~gi~~~~g~~f~~------~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                                   +.+++..+++++||.++||+.|+.      +++++|||++.+++++++++++|++++-.
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~~~e~l~~a~~rl~~~lg~  417 (418)
T d2r5ea1         346 SKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKGS  417 (418)
T ss_dssp             TTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred             ccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEecCCHHHHHHHHHHHHHHHcc
Confidence                         357788889999999999999974      25899999988999999999999998753

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.1e-38  Score=273.30  Aligned_cols=233  Identities=22%  Similarity=0.268  Sum_probs=197.3

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|.......+...        ..|.+|.+.++....+++++++++|||||||.+++        ++|++++++||
T Consensus       119 ~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii  198 (375)
T d1o4sa_         119 SPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYII  198 (375)
T ss_dssp             ESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             cCccccchhhhhccccccccccccccccccchhHHHHHhhccCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCcee
Confidence            599999999998887655        34677788888888889999999999999999993        78999999999


Q ss_pred             eeccc--c--CCCCC---CCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Q 024997           65 YDHAY--F--WPHFA---PIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKL  137 (259)
Q Consensus        65 ~De~y--~--~~~~~---~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  137 (259)
                      +||+|  +  .....   ...+..+++++++|+||.|+++|+|+||++++ +++++.+...........+...|......
T Consensus       199 ~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (375)
T d1o4sa_         199 SDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISS-EKVATAVSKIQSHTTSCINTVAQYAALKA  277 (375)
T ss_dssp             EECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECC-HHHHHHHHHHHHHHTCSCCHHHHHHHHHH
T ss_pred             hHhhhccccccccccccccccCCCCCEEEEeechhhccCCcccccccccc-ccchhhhhhhhccccccccccchhhhhhh
Confidence            99988  2  11111   12356789999999999999999999999999 69999998888877788888887766655


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHc
Q 024997          138 LKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAA  217 (259)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  217 (259)
                      ++        .+....++.++++++.+.+.|+..+              +.+..|++|+|+|++++..+.+++.++++++
T Consensus       278 ~~--------~~~~~~~~~~~~r~~~~~~~l~~~g--------------~~~~~p~gg~f~~~~~~~~~~~~~~~ll~~~  335 (375)
T d1o4sa_         278 LE--------VDNSYMVQTFKERKNFVVERLKKMG--------------VKFVEPEGAFYLFFKVRGDDVKFCERLLEEK  335 (375)
T ss_dssp             TT--------CCCHHHHHHHHHHHHHHHHHHHHTT--------------CCCCCCSBSSEEEEECSSCHHHHHHHHHHHH
T ss_pred             cc--------cchhhhHHHHHHHHHHHHHHHHhcC--------------ceEecCCccEEEEEECCCCHHHHHHHHHHhC
Confidence            44        3556678889999999999998765              5567899999999999887789999999999


Q ss_pred             CeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          218 KIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       218 gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      ||.++||+.|+. ++++|||++.++++++++++||+++|+
T Consensus       336 gV~v~pG~~F~~-~g~iRis~~~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         336 KVALVPGSAFLK-PGFVRLSFATSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             CEECEEGGGGTC-TTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred             CEEEEEccccCC-CCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence            999999999985 589999998899999999999999986

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-38  Score=273.60  Aligned_cols=242  Identities=12%  Similarity=0.184  Sum_probs=201.6

Q ss_pred             CCCcccchhhhhhccCccc------------------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------H
Q 024997            1 MPFYPLYQEQTDYFESVDY------------------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------A   54 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~------------------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~   54 (259)
                      +|+|+.|...+...|....                  +|.+|.+++....++.++++++++||||||.+++        +
T Consensus       119 ~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~  198 (418)
T d1w7la_         119 EPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVAS  198 (418)
T ss_dssp             ESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             ccccchhHHHHHHcCCEeeccccccccccccccccccCcccchhhhhccccccccceeccCcCCcccccccHHHHHHHHH
Confidence            5899999999999887641                  3456666666677889999999999999999992        7


Q ss_pred             hhcCCCcEEEeeccc----cC-CC---CCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCC
Q 024997           55 VLKGPYAKSIYDHAY----FW-PH---FAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGV  126 (259)
Q Consensus        55 la~~~~~~vi~De~y----~~-~~---~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~  126 (259)
                      +|++++++||+||+|    |. ..   ...+.+..++++++.|+||.++++|+|+||++++ +++++.+.+.......++
T Consensus       199 ~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~-~~~~~~l~~~~~~~~~~~  277 (418)
T d1w7la_         199 LCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGP-DHIMKHLRTVHQNSVFHC  277 (418)
T ss_dssp             HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECC-HHHHHHHHHHHHTTTSCC
T ss_pred             HHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCCcccccccc-hhhhhhhccccccccccc
Confidence            899999999999999    32 22   2233355678999999999999999999999999 699999999988888999


Q ss_pred             CHHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC
Q 024997          127 SRECQLRAFKLLKVVLE--DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER  204 (259)
Q Consensus       127 ~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (259)
                      +++.|.++..++.....  ....+++...++.++++++.+.+.|++++              +.+..|+||+|+|++++.
T Consensus       278 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g--------------~~~~~P~gg~f~~~~~~~  343 (418)
T d1w7la_         278 PTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVG--------------LKPLIPQGSYFLITDISD  343 (418)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTT--------------CEEEECSBSSEEEEECHH
T ss_pred             cchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhcC--------------CcccCCCceeEEEEECcc
Confidence            99999999888875321  12356788889999999999999998765              667789999999998853


Q ss_pred             C---------------chHHHHHHHHHcCeeeecCCcccC------CCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          205 E---------------EDKDCYGILKAAKIIGREGKKFRA------EARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       205 ~---------------~~~~~~~ll~~~gi~~~~g~~f~~------~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      .               +.+++.++|+++||.++||+.|+.      ..+++|||++.+++++++++++|+++..
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~~~~~l~~a~~rl~~~~~  417 (418)
T d1w7la_         344 FKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWKV  417 (418)
T ss_dssp             HHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHHHHHHHHHHHC
T ss_pred             cccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEcCCHHHHHHHHHHHHHHhc
Confidence            1               357788999999999999999973      3589999998899999999999999864

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.3e-38  Score=269.20  Aligned_cols=235  Identities=15%  Similarity=0.196  Sum_probs=199.5

Q ss_pred             CCCcccchhhhhhccCcc-------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEe
Q 024997            1 MPFYPLYQEQTDYFESVD-------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIY   65 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~-------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~   65 (259)
                      +|+|+.|.......|...       .++.+|.+++++.+++++++++++|||||||.+++        ++|.+++.+++.
T Consensus       118 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~  197 (382)
T d1u08a_         118 DPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVIS  197 (382)
T ss_dssp             ESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEE
T ss_pred             cccccchhhhhhhccccceecccccccccCCHHHHhhhhccCccEEEECCCCcccccccccccchhhhhhhccccceeee
Confidence            499999999999988654       35678889999999999999999999999999993        778899999999


Q ss_pred             eccc----cCCCC-CC---CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Q 024997           66 DHAY----FWPHF-AP---IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKL  137 (259)
Q Consensus        66 De~y----~~~~~-~~---~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  137 (259)
                      |+.|    +.+.. ..   .....+++|++.|+||.++++|+|+||++++ +++++.+.........+++.+.|.++..+
T Consensus       198 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~-~~~~~~~~~~~~~~~~~~~~~~q~a~~~~  276 (382)
T d1u08a_         198 DEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAP-APISAEIRKVHQYLTFSVNTPAQLALADM  276 (382)
T ss_dssp             ECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECC-HHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred             ecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhcc-chhHHHHHhhhcccccccccccccccccc
Confidence            9988    11111 11   1134678999999999999999999999999 79999999988888899999999999999


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC----chHHHHHH
Q 024997          138 LKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE----EDKDCYGI  213 (259)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l  213 (259)
                      ++.     .++++...++.++++++.+.+.++..+              +.+..|+||+|+|++++..    +.+++.++
T Consensus       277 l~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------~~~~~p~gg~~~~~~~~~~~~~d~~e~~~~l  337 (382)
T d1u08a_         277 LRA-----EPEHYLALPDFYRQKRDILVNALNESR--------------LEILPCEGTYFLLVDYSAVSTLDDVEFCQWL  337 (382)
T ss_dssp             HHH-----CTHHHHTHHHHHHHHHHHHHHHTTSSS--------------CEECCCCBSSEEEEECTTTCCSCHHHHHHHH
T ss_pred             ccc-----chHHHHHHHHHHHhhhhhhhhhhccCC--------------cEEecCCceEEEEEecCCCCCCCHHHHHHHH
Confidence            985     567888999999999999888776433              6677899999999999853    35778888


Q ss_pred             HHHcCeeeecCCcccC---CCCeEEEEeecChhhHHHHHHHHHHH
Q 024997          214 LKAAKIIGREGKKFRA---EARFVRLSLLKSQDDFDLLLHRLDEL  255 (259)
Q Consensus       214 l~~~gi~~~~g~~f~~---~~~~~Ris~~~~~~~~~~~~~~l~~~  255 (259)
                      ++++||.++||+.|+.   +.+++|||++.++++++++++||+++
T Consensus       338 l~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL~~l  382 (382)
T d1u08a_         338 TQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL  382 (382)
T ss_dssp             HHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTTC
T ss_pred             HHHCCEEEEcchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHhCC
Confidence            9999999999999974   35799999988999999999999864

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=1e-37  Score=270.44  Aligned_cols=239  Identities=15%  Similarity=0.160  Sum_probs=191.4

Q ss_pred             CCCcccchhhhhhccCcc--------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVD--------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|+|+.|...++..|.++        .+|..+++.|++...+.+++++++|||||||.+++        ++|+++|++||
T Consensus       132 ~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi  211 (412)
T d1bw0a_         132 QPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLF  211 (412)
T ss_dssp             ESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEE
T ss_pred             eccchhhhhhhhccCccccccccccccccchhhHHHHhhhhccccccccccccccccccchhhhccccccccccCCeeee
Confidence            599999999999999876        34678888899888899999999999999999982        78899999999


Q ss_pred             eeccc----cCC-C-CCCC---C--CCCCCeEEEeccccccCCCcceEEEEEecC-----HHHHHHHHHhhhhhcCCCCH
Q 024997           65 YDHAY----FWP-H-FAPI---P--APADEELMIFTISKLTGHAGSRFGWAVIKD-----EAVYQRMSAYISLNTMGVSR  128 (259)
Q Consensus        65 ~De~y----~~~-~-~~~~---~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~-----~~~~~~~~~~~~~~~~~~~~  128 (259)
                      +||+|    |.. . ....   .  ....++++++|+||.++++|+|+||+++++     .+++........ ...+++.
T Consensus       212 ~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  290 (412)
T d1bw0a_         212 SDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGM-LVCGPCT  290 (412)
T ss_dssp             EECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHH-HHTCSCH
T ss_pred             chhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCCcccccccchhhcchhhhhhhccccc-cccCCch
Confidence            99999    221 1 1111   1  234568899999999999999999999874     233443333333 3355667


Q ss_pred             HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---
Q 024997          129 ECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---  205 (259)
Q Consensus       129 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  205 (259)
                      +.|..+...+..    ..++++.+.++.++++++.+.+.|.+..+             +.+..|++|+|+|++++..   
T Consensus       291 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~r~~~~~~l~~~~g-------------~~~~~p~gg~~l~~~~~~~~~~  353 (412)
T d1bw0a_         291 VVQAALGEALLN----TPQEHLDQIVAKIEESAMYLYNHIGECIG-------------LAPTMPRGAMYLMSRIDLEKYR  353 (412)
T ss_dssp             HHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHHHHHHTTSTT-------------EEECCCCBTTEEEEEECGGGBS
T ss_pred             hhhhhccccccc----ccccccccccchhHHHHHHHHHHHHHhcC-------------ceecCCCCceEEEEeCChhhcC
Confidence            777766666553    35678899999999999999999976543             6677899999999987632   


Q ss_pred             ----chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          206 ----EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       206 ----~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                          +.+++.++++++||.++||+.|+. ++++|||++.+.++++++++||++++++
T Consensus       354 ~~~~~~~~~~~ll~~~gV~v~PG~~Fg~-~g~iRis~~~~~e~l~eal~Rl~~~l~~  409 (412)
T d1bw0a_         354 DIKTDVEFFEKLLEEENVQVLPGTIFHA-PGFTRLTTTRPVEVYREAVERIKAFCQR  409 (412)
T ss_dssp             SCCSHHHHHHHHHHHHCEECEEGGGGTC-TTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCEEEEeccccCC-CCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence                457888999999999999999985 5899999988999999999999999975

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=100.00  E-value=5.5e-38  Score=270.61  Aligned_cols=242  Identities=14%  Similarity=0.106  Sum_probs=190.0

Q ss_pred             CCCcccchhhhhhccCcc---------cccccChhhhcccC-CCCceEEEEcCCCCCChhhHH--------HhhcCCCcE
Q 024997            1 MPFYPLYQEQTDYFESVD---------YKFEGEANLWGNAS-SDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAK   62 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~---------~~~~~d~~~l~~~~-~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~   62 (259)
                      +|.|++|....+..|...         ..|.+|.+.++..+ .++++++++||||||||.+++        ++|+++|++
T Consensus       120 ~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~  199 (394)
T d1c7na_         120 TPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLM  199 (394)
T ss_dssp             SSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCE
T ss_pred             cCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhccccceEEEecccccccceeccHHHhhhhhcccccccee
Confidence            589999999999888754         23567777777766 567999999999999999993        789999999


Q ss_pred             EEeeccc----cCC-CCCCCC----CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHH
Q 024997           63 SIYDHAY----FWP-HFAPIP----APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLR  133 (259)
Q Consensus        63 vi~De~y----~~~-~~~~~~----~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~  133 (259)
                      ||+||+|    |.. ...+..    ...++++++.|+||.|+++|+|+||++++++.+.+.+.........+++...+.+
T Consensus       200 ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  279 (394)
T d1c7na_         200 LWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYK  279 (394)
T ss_dssp             EEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHH
T ss_pred             EeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccccChhhhhhhhhhhhhccccccccccch
Confidence            9999999    222 222221    2346899999999999999999999999877788888777765555555555554


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---chHHH
Q 024997          134 AFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---EDKDC  210 (259)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  210 (259)
                      +......    ..+.+.++.++.++++++.+.+.++...       .+     +.+..|+|++|+|++++..   +.+++
T Consensus       280 a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~-----~~~~~p~g~~~~~~~~~~~~~~~~~~~  343 (394)
T d1c7na_         280 ACEICYK----ECGKWLDGCIKVIDKNQRIVKDFFEVNH-------PE-----IKAPLIEGTYLQWIDFRALKMDHKAME  343 (394)
T ss_dssp             HHHHHHH----HCHHHHHHHHHHHHHHHHHHHHHHHHHC-------TT-----SBCCCCSBSSEEEEECGGGCCCHHHHH
T ss_pred             hhhhhhc----chhhhhcccccccchhhhhhhhhhhccc-------cc-----eeecCCCceeEEEEECCCCCCCHHHHH
Confidence            4444432    2567888888889999888888887532       11     4556889999999998753   35677


Q ss_pred             HHHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          211 YGILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       211 ~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ..+++++||.++||+.|+. +++++|||++.++++++++++||++++++
T Consensus       344 ~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~~~l~~  392 (394)
T d1c7na_         344 EFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKD  392 (394)
T ss_dssp             HHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCEEEEcchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            8888888999999999985 57899999988889999999999999874

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=100.00  E-value=2.6e-37  Score=269.08  Aligned_cols=241  Identities=19%  Similarity=0.251  Sum_probs=187.1

Q ss_pred             CCCcccchhhhhhc-cCcc--------cccccChhhhcccC------CCCceEEEEcCCCCCChhhHH--------Hhhc
Q 024997            1 MPFYPLYQEQTDYF-ESVD--------YKFEGEANLWGNAS------SDTHLVEFVTAPNNPDGQMNK--------AVLK   57 (259)
Q Consensus         1 ~P~y~~~~~~~~~~-g~~~--------~~~~~d~~~l~~~~------~~~~~~i~i~~p~NPtG~~~~--------~la~   57 (259)
                      +|+|+.|...+... |.++        .+|.+|.+.++..+      .+++++++++|||||||.+++        ++|+
T Consensus       139 ~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~  218 (428)
T d1iaya_         139 SPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTN  218 (428)
T ss_dssp             SSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             cCCchHHHHHHHHhcCCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeec
Confidence            59999998877754 5544        34678877665442      567899999999999999983        7899


Q ss_pred             CCCcEEEeeccc----c-CCCCCCCC----------CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhh
Q 024997           58 GPYAKSIYDHAY----F-WPHFAPIP----------APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN  122 (259)
Q Consensus        58 ~~~~~vi~De~y----~-~~~~~~~~----------~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~  122 (259)
                      ++|++||+||+|    | ++.+.++.          ...+++++++||||.|+++|+|+||++++++.+.+.+...... 
T Consensus       219 ~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~~-  297 (428)
T d1iaya_         219 QHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSF-  297 (428)
T ss_dssp             TTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTT-
T ss_pred             cCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhhcc-
Confidence            999999999999    3 22222221          2457899999999999999999999999766777776665543 


Q ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEec
Q 024997          123 TMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKC  202 (259)
Q Consensus       123 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (259)
                       ..++.+.|.++.+.+...  +..++++.+.++.++++++.+.+.|+..+              +.+..|++|+|+|+++
T Consensus       298 -~~~~~~~~~~~~a~l~~~--~~~~~~~~~~~~~l~~r~~~~~~~L~~~g--------------i~~~~p~gg~f~w~~l  360 (428)
T d1iaya_         298 -GLVSTQTQYFLAAMLSDE--KFVDNFLRESAMRLGKRHKHFTNGLEVVG--------------IKCLKNNAGLFCWMDL  360 (428)
T ss_dssp             -SCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------------CCBCCCSSSSEEEEEC
T ss_pred             -cccccccccchhhhhhhh--ccccccccccccccchhHHHHHHHHHhCC--------------CEEecCCcceEEEEEC
Confidence             456777777766665421  01245678888889999999999998654              5567899999999998


Q ss_pred             CCC--------chHHHHHHHHHcCeeeecCCcccC-CCCeEEEEeec-ChhhHHHHHHHHHHHhhhC
Q 024997          203 ERE--------EDKDCYGILKAAKIIGREGKKFRA-EARFVRLSLLK-SQDDFDLLLHRLDELISKE  259 (259)
Q Consensus       203 ~~~--------~~~~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~~  259 (259)
                      +..        +.+++..+++++||.++||+.|+. +++++||||+. ++++++++++||+++|..+
T Consensus       361 ~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~~~~~~l~~al~Rl~~~l~~~  427 (428)
T d1iaya_         361 RPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVE  427 (428)
T ss_dssp             GGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHhhc
Confidence            753        235677888889999999999985 57999999986 6778999999999998754

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=100.00  E-value=7.7e-37  Score=266.31  Aligned_cols=240  Identities=19%  Similarity=0.226  Sum_probs=185.7

Q ss_pred             CCCcccchhhhhhc-cCcc--------cccccChhhhcccC------CCCceEEEEcCCCCCChhhHH--------Hhhc
Q 024997            1 MPFYPLYQEQTDYF-ESVD--------YKFEGEANLWGNAS------SDTHLVEFVTAPNNPDGQMNK--------AVLK   57 (259)
Q Consensus         1 ~P~y~~~~~~~~~~-g~~~--------~~~~~d~~~l~~~~------~~~~~~i~i~~p~NPtG~~~~--------~la~   57 (259)
                      +|+|+.|...+... |...        .+|.+|++.+++.+      ..++++++++|||||||.+++        ++|+
T Consensus       140 ~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~  219 (431)
T d1m7ya_         140 TPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVE  219 (431)
T ss_dssp             ESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCcccccccccccccccccccccc
Confidence            49999999888754 4443        34778887777655      347889999999999999982        7889


Q ss_pred             CCCcEEEeeccc----cC-CCCCCC------------CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhh
Q 024997           58 GPYAKSIYDHAY----FW-PHFAPI------------PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS  120 (259)
Q Consensus        58 ~~~~~vi~De~y----~~-~~~~~~------------~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~  120 (259)
                      ++|++||+||+|    |. +.+.++            ....+++++++|+||.||++|+|+||+++++ +++........
T Consensus       220 ~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~-~~i~~~~~~~~  298 (431)
T d1m7ya_         220 DKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSND-DMVVAAATKMS  298 (431)
T ss_dssp             HHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESC-HHHHHHHHHHG
T ss_pred             ccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccch-hhhHHHHHHHh
Confidence            999999999999    32 222221            1234679999999999999999999999995 66555544443


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEE
Q 024997          121 LNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWV  200 (259)
Q Consensus       121 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (259)
                      . ..+++++.|.++.+.+...  +..++++.+.++.++++++.+.+.|++.+              +.+++|++|+|+|+
T Consensus       299 ~-~~~~~~~~~~~~~a~l~~~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--------------i~~~~p~gg~f~w~  361 (431)
T d1m7ya_         299 S-FGLVSSQTQHLLSAMLSDK--KLTKNYIAENHKRLKQRQKKLVSGLQKSG--------------ISCLNGNAGLFCWV  361 (431)
T ss_dssp             G-GSCCCHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHHHHTTT--------------CEECCCCSSSEEEE
T ss_pred             c-cccccccccchhhhhhccc--hhhhhhhhhhhhhhhhhhhhhhhhhhcCC--------------cEEecCCceeEEEE
Confidence            2 3556666777666666521  01245788888999999999999998654              66778999999999


Q ss_pred             ecCCC--------chHHHHHHHHHcCeeeecCCcccC-CCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          201 KCERE--------EDKDCYGILKAAKIIGREGKKFRA-EARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       201 ~~~~~--------~~~~~~~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      +++..        +.+++.++++++||.++||+.|+. +++|+|||++. ++++++++++||++++++
T Consensus       362 ~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a~~~e~~l~~al~rL~~~l~~  429 (431)
T d1m7ya_         362 DMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGE  429 (431)
T ss_dssp             ECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             ECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHH
Confidence            98753        236678889899999999999985 57899999986 777899999999999875

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.1e-36  Score=260.05  Aligned_cols=235  Identities=14%  Similarity=0.221  Sum_probs=199.8

Q ss_pred             CCCcccchhhhhhccCcc---------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEE
Q 024997            1 MPFYPLYQEQTDYFESVD---------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKS   63 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~---------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~v   63 (259)
                      +|+|+.|...++..|...         ..+.+|.+.+++.+++.+++++++|||||||.+++        ++|+++|+++
T Consensus       109 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~i  188 (368)
T d1v2da_         109 EPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFL  188 (368)
T ss_dssp             ESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred             CCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhhccCceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCee
Confidence            589999999999988654         24789999999999999999999999999999982        7899999999


Q ss_pred             Eeecccc---CCCCCCC--CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 024997           64 IYDHAYF---WPHFAPI--PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLL  138 (259)
Q Consensus        64 i~De~y~---~~~~~~~--~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l  138 (259)
                      |+||+|.   .......  ....++.+++.|+||.++++|+|+||++++ +++++.+.+.......+++.+.|.++..++
T Consensus       189 i~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l  267 (368)
T d1v2da_         189 ISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGP-KEFMPRLAGMRQWTSFSAPTPLQAGVAEAL  267 (368)
T ss_dssp             EEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECC-TTTHHHHHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred             eechhhhhhcccccccccccccccccceeeccccccccccccccccccc-ccccchhhhhhhcccccccccccccccccc
Confidence            9999882   1111111  135677899999999999999999999999 599999999988888999999999988888


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcC
Q 024997          139 KVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAK  218 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g  218 (259)
                      ...   ..+.++++.++.++++++.+.+.|++++              +.+..|++++|+|++++..+   ..++++++|
T Consensus       268 ~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~g--------------~~~~~p~g~~~~~~~l~~~~---~~~ll~~~g  327 (368)
T d1v2da_         268 KLA---RREGFYEALREGYRRRRDLLAGGLRAMG--------------LRVYVPEGTYFLMAELPGWD---AFRLVEEAR  327 (368)
T ss_dssp             HHH---HHTTHHHHHHHHHHHHHHHHHHHHHHTT--------------CCEECCSBSSEEEEECTTCC---HHHHHHHTC
T ss_pred             ccc---cchhhHHHHHHHHHHhhhhhhhhHHhcC--------------cEEecCCceeEEEEeCCccH---HHHHHHhCC
Confidence            653   2456889999999999999999999875              66778999999999998543   345788999


Q ss_pred             eeeecCCcccC---CCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          219 IIGREGKKFRA---EARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       219 i~~~~g~~f~~---~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      |.++||+.|+.   +++++|||++.+++++++++++|+++|
T Consensus       328 I~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         328 VALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVV  368 (368)
T ss_dssp             EECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred             EEEEechhhCCCCCCCCEEEEEecCCHHHHHHHHHHHHHhC
Confidence            99999999974   478999999889999999999999875

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=9.4e-36  Score=256.04  Aligned_cols=239  Identities=15%  Similarity=0.167  Sum_probs=190.3

Q ss_pred             CCCcccchhhhhhccCccc-------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEEe
Q 024997            1 MPFYPLYQEQTDYFESVDY-------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSIY   65 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~-------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi~   65 (259)
                      +|+|+.|....+..|....       ++..+.+.+.....+++++++++|||||||.+++        ++|+++|++||+
T Consensus       118 ~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~  197 (389)
T d2gb3a1         118 EPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIV  197 (389)
T ss_dssp             ESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCccccccccccCccccccccccccccchhhhhhhhcccCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEE
Confidence            5999999999999987652       2344445566667889999999999999999983        889999999999


Q ss_pred             eccc--c--CCC-CCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q 024997           66 DHAY--F--WPH-FAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKV  140 (259)
Q Consensus        66 De~y--~--~~~-~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  140 (259)
                      ||+|  +  .+. ........++++++.|+||.++++|+|+||++++++.+.+ ..........+++.+.|.++..++. 
T Consensus       198 De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~l~-  275 (389)
T d2gb3a1         198 DEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELIS-HAMKLAQGRLAPPLLEQIGSVGLLN-  275 (389)
T ss_dssp             ECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHH-HHHHHHHHSCCCCHHHHHHHHHHHT-
T ss_pred             eccccccccccccccccccccccccccccccccccCcccceeeeeccchhHHH-HHhhhhhcccccccccccccccccc-
Confidence            9999  2  222 2222245678999999999999999999999998644444 4444444567778888887777776 


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCc-hHHHHHHHHH---
Q 024997          141 VLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREE-DKDCYGILKA---  216 (259)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~---  216 (259)
                          ..+.++++.++.++++++.+.+.|++++.             ..+..|++|+|+|++++..+ .+++..++++   
T Consensus       276 ----~~~~~~~~~~~~~~~~~~~~~~~L~~~~~-------------~~~~~p~~g~~~~~~lp~~~~~~~~~~ll~e~~l  338 (389)
T d2gb3a1         276 ----LDDSFFDFVRETYRERVETVLKKLEEHGL-------------KRFTKPSGAFYITAELPVEDAEEFARWMLTDFNM  338 (389)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------CCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCCB
T ss_pred             ----ccchhcccccccccccchhhhhhhhhhcc-------------ccccCCCceEEEEEeCCCCCHHHHHHHHHHhhhh
Confidence                36778999999999999999999998764             33457899999999998664 5667777764   


Q ss_pred             --cCeeeecCCcccC----CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          217 --AKIIGREGKKFRA----EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       217 --~gi~~~~g~~f~~----~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                        +||.+.||+.|+.    +++++|||++.+++++++++++|.+.|++
T Consensus       339 ~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~~a~~~L~~~lk~  386 (389)
T d2gb3a1         339 DGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKM  386 (389)
T ss_dssp             TTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             hhCCEEEEeCcccccCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence              4789999998874    36799999988999999999999998864

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=3.4e-35  Score=249.64  Aligned_cols=231  Identities=18%  Similarity=0.240  Sum_probs=181.7

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCCcEEE
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAKSI   64 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~vi   64 (259)
                      +|.|+.|.......+....        +|.++ +.+++.+.+++++++++|||||||.+++        ++|+++++++|
T Consensus       103 ~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li  181 (355)
T d1lc5a_         103 TPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLI  181 (355)
T ss_dssp             ESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             CCccceeccccccccccceeeeeeccCCccce-eeeeeccccccceeeeecccCcccccchhhhhhhhhhhccccccccc
Confidence            4889999888888777552        23443 3456667888999999999999999972        78899999999


Q ss_pred             eecccc--C---CCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q 024997           65 YDHAYF--W---PHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLK  139 (259)
Q Consensus        65 ~De~y~--~---~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~  139 (259)
                      +||+|+  .   ..........+++++++|+||.+|++|+|+||++++++.+.+.++...  ..+..+.+.|.++..+++
T Consensus       182 ~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~l~  259 (355)
T d1lc5a_         182 LDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQ--MPWSVNALAALAGEVALQ  259 (355)
T ss_dssp             EECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHS--CTTCSCHHHHHHHHHGGG
T ss_pred             cccceeeeeeecccccccccccccceeecccccccccccccccceeccchhhhHHHHhhc--CCcccccccccccccccc
Confidence            999993  2   122223356678999999999999999999999998644555555433  346788999999988887


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCe
Q 024997          140 VVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKI  219 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi  219 (259)
                            ...++.+.++.++++++++.+.|.++++             +. ..|.+|+|+|++++..+.++...+ .++||
T Consensus       260 ------~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~-~~p~~~~f~~~~~~~~~~~~~~~L-~~~gv  318 (355)
T d1lc5a_         260 ------DSAWQQATWHWLREEGARFYQALCQLPL-------------LT-VYPGRANYLLLRCEREDIDLQRRL-LTQRI  318 (355)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHTSTT-------------EE-ECCCSSSEEEEEESCTTCCHHHHH-HTTTE
T ss_pred             ------ccchhHHHHHHHHHHHHHHHHHHhhcCC-------------cE-ECCCCCEEEEEECCCCHHHHHHHH-HHCCc
Confidence                  4567888899999999999999987653             33 356788999999987555555555 57899


Q ss_pred             eeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          220 IGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       220 ~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      .++||..|+. +++++|||++ ++++++.++++|+++|
T Consensus       319 ~vr~~~~f~~~~~~~iRis~~-~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         319 LIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVL  355 (355)
T ss_dssp             ECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred             EEEeCccCCCCCCCEEEEEeC-CHHHHHHHHHHHHHhC
Confidence            9999998874 5789999995 7888999999999875

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-35  Score=251.22  Aligned_cols=241  Identities=11%  Similarity=0.086  Sum_probs=183.1

Q ss_pred             CCCcccchhhhhhccCcc---------cccccChhhhcccC-CCCceEEEEcCCCCCChhhHH--------HhhcCCCcE
Q 024997            1 MPFYPLYQEQTDYFESVD---------YKFEGEANLWGNAS-SDTHLVEFVTAPNNPDGQMNK--------AVLKGPYAK   62 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~---------~~~~~d~~~l~~~~-~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~~   62 (259)
                      +|+|+.|..+++..|...         .+|.+|++.+++.+ ++++++++++|||||||.+++        ++|+++|++
T Consensus        89 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~  168 (361)
T d1d2fa_          89 TPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVR  168 (361)
T ss_dssp             ESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCE
T ss_pred             cccccchhHHHHhhcceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhhhhhhhhhhhee
Confidence            599999999999888764         23568888888888 568999999999999999983        789999999


Q ss_pred             EEeeccc--c--C-CCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHh-hhhhc-CCCCHHHHHHH
Q 024997           63 SIYDHAY--F--W-PHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAY-ISLNT-MGVSRECQLRA  134 (259)
Q Consensus        63 vi~De~y--~--~-~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~-~~~~~-~~~~~~~q~~~  134 (259)
                      +|+||+|  |  . ....++. ...++++++.|+||.++++|+|+||+++++....+..... ..... .+++...+.++
T Consensus       169 lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  248 (361)
T d1d2fa_         169 VISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAH  248 (361)
T ss_dssp             EEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHH
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccccceeeecchhHHHHHHhhhcccccccccchhhhHHHH
Confidence            9999999  2  2 1222222 3456799999999999999999999987754554544333 32222 23344444444


Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---chHHHH
Q 024997          135 FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---EDKDCY  211 (259)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  211 (259)
                      ...++.     .+.+.++.+..++++++.+.+.+....       .+     +.+..|++|+|+|++++..   +.+++.
T Consensus       249 ~~~~~~-----~~~~~~~~~~~~~~r~~~~~~~~~~~~-------~~-----~~~~~p~gg~~~~~~l~~~~~~~~~~~~  311 (361)
T d1d2fa_         249 IAAYQQ-----GAPWLDALRIYLKDNLTYIADKMNAAF-------PE-----LNWQIPQSTYLAWLDLRPLNIDDNALQK  311 (361)
T ss_dssp             HHHHHH-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-------SS-----CCCCCCSBCSEEEEECGGGCCCHHHHHH
T ss_pred             HHHhhc-----cchhhhcccccchhhHHHHHHHhhhhc-------cc-----ccccccCceeEEEEEccCCCCCHHHHHH
Confidence            444442     456778888888888888887766432       11     4556889999999998632   457777


Q ss_pred             HHHHHcCeeeecCCcccC-CCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          212 GILKAAKIIGREGKKFRA-EARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       212 ~ll~~~gi~~~~g~~f~~-~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ++++++||.++||+.|+. +.+++|||++.+++++++++++|++++++
T Consensus       312 ~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l~~  359 (361)
T d1d2fa_         312 ALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRA  359 (361)
T ss_dssp             HHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCEEEEeccccCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence            888889999999999985 57899999988899999999999999874

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.1e-35  Score=255.22  Aligned_cols=244  Identities=13%  Similarity=0.136  Sum_probs=191.9

Q ss_pred             CCCcccchhhhhhccCcccc-----cccChhhhcccC---------CCCceEEEEcCCCCCChhhH--------HHhhcC
Q 024997            1 MPFYPLYQEQTDYFESVDYK-----FEGEANLWGNAS---------SDTHLVEFVTAPNNPDGQMN--------KAVLKG   58 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~-----~~~d~~~l~~~~---------~~~~~~i~i~~p~NPtG~~~--------~~la~~   58 (259)
                      +|+|+.|...++..|..+..     .++|++.++..+         ++.+.++++++||||||.++        .++|++
T Consensus       135 ~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~  214 (420)
T d1vp4a_         135 DPAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEK  214 (420)
T ss_dssp             ESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             cccccchhHHHHHHhhhcccccccccccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhc
Confidence            59999999999999887632     344554443221         33456778899999999998        288999


Q ss_pred             CCcEEEeeccc----cCC-CCCCCC--CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHH
Q 024997           59 PYAKSIYDHAY----FWP-HFAPIP--APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQ  131 (259)
Q Consensus        59 ~~~~vi~De~y----~~~-~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q  131 (259)
                      +++++|+||+|    |.. ...+..  ...+++++++|+||+++ +|+|+||++++ +++++++.+.......+++.+.|
T Consensus       215 ~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~-~G~RiG~~~~~-~~~i~~l~~~~~~~~~~~~~~~q  292 (420)
T d1vp4a_         215 YDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAGS-KEFIRKIVQAKQSADLCSPAITH  292 (420)
T ss_dssp             TTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEECC-HHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             ccccccccchhhhccccCcccccccccccccceeEEeccccccc-ccccccccccc-chhhhhhhhhhhhccccCchhhh
Confidence            99999999999    222 222221  35678999999999985 99999999999 79999999988888899999999


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHH
Q 024997          132 LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDC  210 (259)
Q Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  210 (259)
                      .+++.++...   ...+++++.++.++++++.+.+.|++...    ..+     .+.+..|++|+|+|+++++. +...+
T Consensus       293 ~~~a~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~~~----~~~-----g~~~~~p~gg~f~~~~~~~~~d~~~~  360 (420)
T d1vp4a_         293 RLAARYLERY---DLLEQLKPTIELYRRKRTVMLNALEEYFS----DIP-----GVKWVKSEGGLFIWLTLPEGFDTWEM  360 (420)
T ss_dssp             HHHHHHHHHS---CHHHHTHHHHHHHHHHHHHHHHHHHHHST----TST-----TCEECCCSBSSEEEEECCTTCCTTTT
T ss_pred             hhhhhhcccc---cccccchhHHHHhhhhcccchhhhhhhhc----cCC-----CcEEecCCceEEEEEECCCCCCHHHH
Confidence            9998888752   34556778888999999999999886431    111     16677899999999999764 44455


Q ss_pred             HHHHHHcCeeeecCCcccC---CCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          211 YGILKAAKIIGREGKKFRA---EARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       211 ~~ll~~~gi~~~~g~~f~~---~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      .++|+++||.++||+.|+.   +.+++|||++. ++++++++++||++++++
T Consensus       361 ~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~~~~~e~l~~a~~rL~~~l~~  412 (420)
T d1vp4a_         361 FEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLE  412 (420)
T ss_dssp             HHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCeEEEechhhCCCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHH
Confidence            5677789999999999984   36799999986 888999999999999864

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=100.00  E-value=6.3e-35  Score=251.93  Aligned_cols=242  Identities=16%  Similarity=0.141  Sum_probs=191.4

Q ss_pred             CCCcccchhhhhhccCcccccccC-----hhh-------hcccCCCCceEEEEcCCCCCChhhHH--------HhhcCCC
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEGE-----ANL-------WGNASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPY   60 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~d-----~~~-------l~~~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~   60 (259)
                      +|+|+.|...+...|.+......+     ...       .....++.+.++++++||||||.+++        ++|+++|
T Consensus       125 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~  204 (403)
T d1wsta1         125 APTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYD  204 (403)
T ss_dssp             ESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred             CCcchhhhHHHhhccccceeEeecccCCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcC
Confidence            599999999999998876433222     111       11122456778899999999999983        7899999


Q ss_pred             cEEEeeccc--c--C-CCCCCCC--CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHH
Q 024997           61 AKSIYDHAY--F--W-PHFAPIP--APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLR  133 (259)
Q Consensus        61 ~~vi~De~y--~--~-~~~~~~~--~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~  133 (259)
                      ++||+||+|  +  . ....++.  ...+++++++|+||.++ +|+|+||++++ +++++.+.........+++...|.+
T Consensus       205 ~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~G~RiG~~i~~-~~~i~~~~~~~~~~~~~~~~~~~~~  282 (403)
T d1wsta1         205 FLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILA-PGFRIGWVAAH-PHLIRKMEIAKQSIDLCTNTFGQAI  282 (403)
T ss_dssp             CEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTC-GGGCCEEEEEC-HHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             ceeccccchhheecCCCCCCcccccCCCCcEEEEccccceec-Ccccccccccc-hHHHHHHHHHHhhhccccccchhhh
Confidence            999999999  2  2 2222332  45678999999999996 99999999999 7999999988887788899999988


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHH
Q 024997          134 AFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYG  212 (259)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  212 (259)
                      ...++...   ..+.++++.++.++++++.+.+.|.....           ..+.+..|.+|+|+|++++.. +.+.+.+
T Consensus       283 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~~~-----------~~~~~~~p~gg~~~~~~~~~~~~~~~~~~  348 (403)
T d1wsta1         283 AWKYVENG---YLDEHIPKIIEFYKPRRDAMLEALEEYMP-----------EGVEWTKPEGGMFVRVTLPEGIDTKLMME  348 (403)
T ss_dssp             HHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------TTCEECCCSBSSEEEEECCTTCCTTTTHH
T ss_pred             HHhhhhcc---ccchhHHHHHHHHHHHHHHHHHHHHhhcc-----------CCeEEeCCCceeEEEEECCCCCCHHHHHH
Confidence            87777642   24456788888999999999998886431           115567899999999999875 4566666


Q ss_pred             HHHHcCeeeecCCcccC---CCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          213 ILKAAKIIGREGKKFRA---EARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       213 ll~~~gi~~~~g~~f~~---~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                      +|.++||.++||+.|+.   +++++||+++. +++++++++++|++++++
T Consensus       349 ~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l~~  398 (403)
T d1wsta1         349 RAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKE  398 (403)
T ss_dssp             HHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCEEEEechhhcCCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence            77788999999999974   36899999986 889999999999999886

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-34  Score=243.62  Aligned_cols=229  Identities=19%  Similarity=0.188  Sum_probs=179.0

Q ss_pred             CCCcccchhhhhhccCcc------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH-------HhhcCCCcEEEeec
Q 024997            1 MPFYPLYQEQTDYFESVD------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-------AVLKGPYAKSIYDH   67 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-------~la~~~~~~vi~De   67 (259)
                      +|+|+.|...++..|.++      .+|.+|.++++..+ +++++++++|||||||.+++       ..+.+++.++|+||
T Consensus       105 ~P~y~~~~~~~~~~g~~v~~~~~~~~~~~d~~~l~~~~-~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd  183 (354)
T d1fg7a_         105 PPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKL-DGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADE  183 (354)
T ss_dssp             SSSCTHHHHHHHHHTCEEEECCCCTTSCCCHHHHHTSC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEEC
T ss_pred             ccccccchhhhhccCceeeccccccccccchhhhhhcc-cccceeeccCCCccceeEeeecccccccccccccccccccc
Confidence            599999999999998875      45789999888776 47899999999999999983       23445678888888


Q ss_pred             ccc--C--CCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 024997           68 AYF--W--PHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLE  143 (259)
Q Consensus        68 ~y~--~--~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~  143 (259)
                      +|+  .  ..........+++++++||||.||++|+|+||++++ +++++.+.+....  +.++.+.|.++..++...  
T Consensus       184 ~~~~f~~~~~~~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~-~~~i~~l~~~~~~--~~~~~~~~~~a~~~~~~~--  258 (354)
T d1fg7a_         184 AYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLAN-EEVINLLMKVIAP--YPLSTPVADIAAQALSPQ--  258 (354)
T ss_dssp             TTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEEC-HHHHHHHHHHSCS--SCSCHHHHHHHHHHTSHH--
T ss_pred             cchhhccccccchhhcccccceEEeCCccccCCCcccccccccc-chhhhhhhhhcCc--cchhhHHHHHHHHHHhhh--
Confidence            884  1  222223356788999999999999999999999999 7999999877654  567788887776666531  


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeec
Q 024997          144 DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGRE  223 (259)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~  223 (259)
                        ...+.....+.+.++++.+...+..+++             +....|.+++|+|+++++  .+.+.+.|.++||.+++
T Consensus       259 --~~~~~~~~~~~~~~~r~~l~~~l~~~~~-------------~~~~~p~~~~f~~~~~~~--~~~~~~~L~~~gIlvr~  321 (354)
T d1fg7a_         259 --GIVAMRERVAQIIAEREYLIAALKEIPC-------------VEQVFDSETNYILARFKA--SSAVFKSLWDQGIILRD  321 (354)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHSTT-------------EEEECCCSSSEEEEEETT--HHHHHHHHHHTTEECEE
T ss_pred             --ccccccccchhhhhHHHHHHHHHHhCCC-------------cceeCCCCceEEEEeCCC--HHHHHHHHHHCCcEEec
Confidence              2334566677788888999999887764             445578899999999974  44455556678999999


Q ss_pred             CCcccCCCCeEEEEeecChhhHHHHHHHHH
Q 024997          224 GKKFRAEARFVRLSLLKSQDDFDLLLHRLD  253 (259)
Q Consensus       224 g~~f~~~~~~~Ris~~~~~~~~~~~~~~l~  253 (259)
                      +..|+..++|+|||++ ++++++.++++|+
T Consensus       322 ~~~~~~~~~~lRisig-t~ee~~~~l~aLk  350 (354)
T d1fg7a_         322 QNKQPSLSGCLRITVG-TREESQRVIDALR  350 (354)
T ss_dssp             CTTSTTCTTEEEEECC-CHHHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEEeC-CHHHHHHHHHHHh
Confidence            9988765689999995 6778888888876

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8.1e-34  Score=239.23  Aligned_cols=224  Identities=20%  Similarity=0.218  Sum_probs=178.5

Q ss_pred             CCCcccchhhhhhccCcccccccChhhhc-ccCCCCceEEEEcCCCCCChhhHH----HhhcCCCcEEEeeccccCC---
Q 024997            1 MPFYPLYQEQTDYFESVDYKFEGEANLWG-NASSDTHLVEFVTAPNNPDGQMNK----AVLKGPYAKSIYDHAYFWP---   72 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~~~d~~~l~-~~~~~~~~~i~i~~p~NPtG~~~~----~la~~~~~~vi~De~y~~~---   72 (259)
                      +|+|+.|...+++.|.+...+..+.+... +...+++++++++|||||||.+++    +.+.+++.++|+||+|++.   
T Consensus       103 ~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~~~~~l~l~nP~NPtG~~~s~~~l~~~~~~~~~ii~Dd~~~~~~~~  182 (334)
T d2f8ja1         103 PPTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHVFEREEIERILKTGAFVALDEAYYEFHGE  182 (334)
T ss_dssp             SSCCHHHHHHHHHHTCCEEECCCCTTSCCCCCCCCTTEEEEEESSCTTTCCCCCHHHHHHHHTTTCEEEEECTTGGGTCC
T ss_pred             cccccccccchhccCCccccccccccccccccccccceEEEecccccccceeecHHHhhccccceeEEeecccchhhccc
Confidence            69999999999999998866655543222 333567899999999999999994    3356789999999999521   


Q ss_pred             CCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHH
Q 024997           73 HFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEF  152 (259)
Q Consensus        73 ~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  152 (259)
                      .........+++++++|+||.++++|+|+||++++ +++++++......  .+++.+.|.++..++.      ..++.++
T Consensus       183 ~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~-~~~i~~l~~~~~~--~~~s~~~~~~a~~~l~------~~~~~~~  253 (334)
T d2f8ja1         183 SYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVAS-EKFIDAYNRVRLP--FNVSYVSQMFAKVALD------HREIFEE  253 (334)
T ss_dssp             CCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEEC-HHHHHHHHHHSCT--TCSCHHHHHHHHHHHH------THHHHHH
T ss_pred             ccccccccCceEEEEecCccccchhhhhhhhcccc-hHHHHHHHHhhcc--cccchhhhhhcccccc------cccchhh
Confidence            11112245678999999999999999999999999 7999999887654  6788999998888887      4568888


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCC
Q 024997          153 GYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEAR  232 (259)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~  232 (259)
                      .++.++++++.+.+.|++++              +++.+++| .|+|+.++..+.+.+.+.|.++||.++++      ++
T Consensus       254 ~~~~~~~~r~~l~~~L~~~g--------------~~~~~~~g-~f~~~~~~~~~~~~~~~~L~~~GI~vr~~------~~  312 (334)
T d2f8ja1         254 RTKFIVEERERMKSALREMG--------------YRITDSRG-NFVFVFMEKEEKERLLEHLRTKNVAVRSF------RE  312 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT--------------CEECCCCS-SEEEEECCHHHHHHHHHHHHHTTEECEEE------TT
T ss_pred             HHHHHHHHHHHHHHHHHHCC--------------CeECCCCc-eEEEEECCCCCHHHHHHHHHHCCCEECCC------CC
Confidence            99999999999999999875              55556655 57899888766666777777899999862      37


Q ss_pred             eEEEEeecChhhHHHHHHHHHHH
Q 024997          233 FVRLSLLKSQDDFDLLLHRLDEL  255 (259)
Q Consensus       233 ~~Ris~~~~~~~~~~~~~~l~~~  255 (259)
                      ++|||++ ++++++.++++|+++
T Consensus       313 ~vRis~g-~~ee~~~l~~~l~~f  334 (334)
T d2f8ja1         313 GVRITIG-KREENDMILRELEVF  334 (334)
T ss_dssp             EEEEECC-CHHHHHHHHHHHHHC
T ss_pred             eEEEEcC-CHHHHHHHHHHHhcC
Confidence            9999995 567788899888764

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.98  E-value=1.5e-32  Score=236.95  Aligned_cols=234  Identities=11%  Similarity=-0.002  Sum_probs=179.7

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccC---CCCceEEEEcCCCCCChhhHH--------HhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNAS---SDTHLVEFVTAPNNPDGQMNK--------AVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~---~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~   61 (259)
                      +|+|+.|...++..|.++.        .+..+.+.+.+.+   .++++++++++||||||.+++        ++|+++++
T Consensus       130 ~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~  209 (401)
T d7aata_         130 KPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNL  209 (401)
T ss_dssp             ESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred             cCCCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceE
Confidence            5999999999999998863        3556666666555   467899999999999999993        89999999


Q ss_pred             EEEeeccc----cCCC-CCC-----CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHh-------hhhhcC
Q 024997           62 KSIYDHAY----FWPH-FAP-----IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAY-------ISLNTM  124 (259)
Q Consensus        62 ~vi~De~y----~~~~-~~~-----~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~-------~~~~~~  124 (259)
                      +||+||+|    |++. ...     .....++++++.|+||.++++|+|+||++++. ++++.+...       ......
T Consensus       210 ~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  288 (401)
T d7aata_         210 LAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVIC-RDAEEAKRVESQLKILIRPMYS  288 (401)
T ss_dssp             EEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEEC-SSHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeeccccceeecch-HHHHHHHHHHHHHHHHhhcccc
Confidence            99999999    2211 111     11345678999999999999999999999984 666554432       334557


Q ss_pred             CCCHHHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecC
Q 024997          125 GVSRECQLRAFKLLKVVLE-DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCE  203 (259)
Q Consensus       125 ~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (259)
                      +++.+.|.++...+....- .....++++.+++++++++.+.+.|+.++.-          ..|.++.+++|+|+|+++ 
T Consensus       289 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~----------~~~~~~~~~~G~F~~~~l-  357 (401)
T d7aata_         289 NPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSS----------HNWQHITDQIGMFCFTGL-  357 (401)
T ss_dssp             SCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------SCCHHHHHCCSSEEECCC-
T ss_pred             ccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----------CCcceECCCCeEEEecCC-
Confidence            8889999988888763210 0023456777888889999999999876520          014456789999999877 


Q ss_pred             CCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHhh
Q 024997          204 REEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       204 ~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l~  257 (259)
                        +.+++.+|++++||.+.||         .|||++. ++++++.+.++|.++++
T Consensus       358 --s~e~~~~L~~e~gV~~~pg---------~Ris~a~~~~~~i~~la~ai~~v~k  401 (401)
T d7aata_         358 --KPEQVERLTKEFSIYMTKD---------GRISVAGVASSNVGYLAHAIHQVTK  401 (401)
T ss_dssp             --CHHHHHHHHHHHCEECCTT---------CEEEGGGCCTTTHHHHHHHHHHHHC
T ss_pred             --CHHHHHHHHHhCCEEECCC---------cEEEeccCCHHHHHHHHHHHHHHhC
Confidence              4678889999999999996         3999986 88999999999998864

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.97  E-value=1.6e-31  Score=231.14  Aligned_cols=234  Identities=12%  Similarity=0.069  Sum_probs=178.2

Q ss_pred             CCCcccchhhhhhccCccc--------ccccChhhhcccC---CCCceEEEEcCCCCCChhhHH--------HhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDY--------KFEGEANLWGNAS---SDTHLVEFVTAPNNPDGQMNK--------AVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~--------~~~~d~~~l~~~~---~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~   61 (259)
                      +|+|+.|...++..|..+.        .+..+.+.+++.+   ++.++++++++||||||.+++        ++|+++++
T Consensus       131 ~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~  210 (412)
T d1yaaa_         131 KPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNH  210 (412)
T ss_dssp             ESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred             cccCchhHHHHHHcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCE
Confidence            5999999999999998762        3456666666555   457889999999999999993        88999999


Q ss_pred             EEEeeccc--c--CCC-CCC--------CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHH-----------HHH
Q 024997           62 KSIYDHAY--F--WPH-FAP--------IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQR-----------MSA  117 (259)
Q Consensus        62 ~vi~De~y--~--~~~-~~~--------~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~-----------~~~  117 (259)
                      ++|+||+|  |  +.. ...        .....++++++.|+||.++++|+|+||+++++ ++++.           +..
T Consensus       211 ~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~-~~~~~~~~~~~~~~~~~~~  289 (412)
T d1yaaa_         211 IALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLAL-TKQAQNKTIKPAVTSQLAK  289 (412)
T ss_dssp             EEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEEC-CSCTTHHHHHHHHHHHHHH
T ss_pred             EEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEch-hhhhhHHHHHHHHHHHHHH
Confidence            99999999  2  211 001        11456789999999999999999999999984 43322           222


Q ss_pred             hhhhhcCCCCHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCe
Q 024997          118 YISLNTMGVSRECQLRAFKLLKVVLED-GGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPA  196 (259)
Q Consensus       118 ~~~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (259)
                      .......+++.+.|.++..++...... ....+++..++.++++++.+.+.|+.++.-          ..|.++.+++|+
T Consensus       290 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~----------~~~~~~~~~gG~  359 (412)
T d1yaaa_         290 IIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTP----------GNWDHIVNQCGM  359 (412)
T ss_dssp             HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS----------SCCTHHHHCCSS
T ss_pred             HHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----------CCCceeCCCceE
Confidence            334556888999999998888742100 123457778888999999999999876520          014556889999


Q ss_pred             eEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHhh
Q 024997          197 YAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       197 ~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l~  257 (259)
                      |+|+.+   +.+++.++++++||.+.||.         |||++. ++++++.+.++|+++++
T Consensus       360 F~~~~l---s~e~~~~L~~e~~V~~~~g~---------Ris~~g~~~~~i~~l~~ai~~v~k  409 (412)
T d1yaaa_         360 FSFTGL---TPQMVKRLEETHAVYLVASG---------RASIAGLNQGNVEYVAKAIDEVVR  409 (412)
T ss_dssp             EEECCC---CHHHHHHHHHHHCEECCTTS---------EEEGGGCCTTTHHHHHHHHHHHHH
T ss_pred             EEecCc---CHHHHHHHHHhCCEEECCCC---------EEEeccCCHHHHHHHHHHHHHHHH
Confidence            999877   46889999999999998853         999976 88889988888888765

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.97  E-value=1e-31  Score=232.36  Aligned_cols=235  Identities=11%  Similarity=0.064  Sum_probs=178.4

Q ss_pred             CCCcccchhhhhhccCccc---------ccccChhhhcccC---CCCceEEEEcCCCCCChhhHH--------HhhcCCC
Q 024997            1 MPFYPLYQEQTDYFESVDY---------KFEGEANLWGNAS---SDTHLVEFVTAPNNPDGQMNK--------AVLKGPY   60 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~---------~~~~d~~~l~~~~---~~~~~~i~i~~p~NPtG~~~~--------~la~~~~   60 (259)
                      +|+|+.|..+++..|.+..         .+..|.+.+++.+   .++++++++|+||||||.+++        ++|+++|
T Consensus       137 ~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~  216 (412)
T d1ajsa_         137 SPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRF  216 (412)
T ss_dssp             ESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             CCcchhhHHHHHHcCCeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCC
Confidence            5999999999999997642         2456666655543   678899999999999999993        8999999


Q ss_pred             cEEEeeccc--c--CCC-CCC-----CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHH-------hhhhhc
Q 024997           61 AKSIYDHAY--F--WPH-FAP-----IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSA-------YISLNT  123 (259)
Q Consensus        61 ~~vi~De~y--~--~~~-~~~-----~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~-------~~~~~~  123 (259)
                      ++||+||+|  +  ... ...     .....++++++.|+||.++++|+|+||++++. ..++.+.+       ......
T Consensus       217 ~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~  295 (412)
T d1ajsa_         217 LFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVA-KEPDSILRVLSQMQKIVRVTW  295 (412)
T ss_dssp             CEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEEC-SSHHHHHHHHHHHHHHHHTTT
T ss_pred             EEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCccccccch-hHHHHHHHHHHHHHHHhhccc
Confidence            999999999  2  211 111     11456779999999999999999999999984 54444332       233445


Q ss_pred             CCCCHHHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEec
Q 024997          124 MGVSRECQLRAFKLLKVVLE-DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKC  202 (259)
Q Consensus       124 ~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (259)
                      .+++...|.++..++..... ...+++++..+++++++++.+.+.|+.++.-          ..|.++.+++|+|+|+.+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~----------~~~~~i~~~~G~F~~~~l  365 (412)
T d1ajsa_         296 SNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTP----------GTWNHITDQIGMFSFTGL  365 (412)
T ss_dssp             SSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS----------SCCHHHHHCCSSEEECCC
T ss_pred             cccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----------CCeeeecCCCeEEEecCC
Confidence            67888889888877753210 0123456777888999999999999876520          014455788999999776


Q ss_pred             CCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHhhh
Q 024997          203 EREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       203 ~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l~~  258 (259)
                         +.+++.++++++||.+.||.         |||++. ++++++.+.++|++++++
T Consensus       366 ---s~~~v~~L~~e~gV~~vpg~---------Ri~~ag~~~~~i~~~a~aI~~av~~  410 (412)
T d1ajsa_         366 ---NPKQVEYLINQKHIYLLPSG---------RINMCGLTTKNLDYVATSIHEAVTK  410 (412)
T ss_dssp             ---CHHHHHHHHHTTCEECCTTS---------EEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHhCCEEEeCCC---------eEEeccCCHHHHHHHHHHHHHHHHh
Confidence               46788899999999999863         999976 889999999999999875

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=8.7e-32  Score=231.78  Aligned_cols=233  Identities=11%  Similarity=-0.018  Sum_probs=164.2

Q ss_pred             CCCcccchhhhhhccCcccc--------cccChhhhcccC---CCCceEEEEcCCCCCChhhHH--------HhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDYK--------FEGEANLWGNAS---SDTHLVEFVTAPNNPDGQMNK--------AVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~--------~~~d~~~l~~~~---~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~   61 (259)
                      +|+|+.|...++..|.++..        +..|.+.+.+.+   ++++++++++|||||||.+++        ++|+++++
T Consensus       128 ~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~  207 (397)
T d3tata_         128 DPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKAREL  207 (397)
T ss_dssp             SSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTC
T ss_pred             ccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCe
Confidence            69999999999999988733        344555444443   467889999999999999993        89999999


Q ss_pred             EEEeeccc----cCCC--CCC---CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHH-------hhhhhcCC
Q 024997           62 KSIYDHAY----FWPH--FAP---IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSA-------YISLNTMG  125 (259)
Q Consensus        62 ~vi~De~y----~~~~--~~~---~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~-------~~~~~~~~  125 (259)
                      +||+||+|    |+..  ...   .....++++++.|+||.++++|+|+||+++++ ..++....       .......+
T Consensus       208 ~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  286 (397)
T d3tata_         208 IPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMC-EDAEAAGRVLGQLKATVRRNYSS  286 (397)
T ss_dssp             CCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEEC-SSTTHHHHHHHHHHHHTTTTTSS
T ss_pred             eEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccccccccch-hHHHHHHHHHHHHHHHhhccccc
Confidence            99999999    2211  111   11456789999999999999999999999884 44433332       33445577


Q ss_pred             CCHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC
Q 024997          126 VSRECQLRAFKLLKVVLED-GGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER  204 (259)
Q Consensus       126 ~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (259)
                      ++...|.++...+...... ...++++..+++++++++.+.+.|..+.       ++ +.  |.+..+++|+|+|+.+  
T Consensus       287 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-------~~-~~--~~~~~~~~G~F~~~~l--  354 (397)
T d3tata_         287 PPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEM-------PE-RN--FDYLLNQRGMFSYTGL--  354 (397)
T ss_dssp             CCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-------TT-SC--TTHHHHCCSSBCCCCC--
T ss_pred             ccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-Cc--eEEEcCCCceEEecCc--
Confidence            7888898888877632100 0112233334444444444444443221       11 11  4455789999999877  


Q ss_pred             CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHh
Q 024997          205 EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELI  256 (259)
Q Consensus       205 ~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l  256 (259)
                       +.+++.+|++++||.+.||.         |||++. ++++++.+.++|++++
T Consensus       355 -s~e~~~~L~~e~~V~l~~g~---------Ri~~a~~~~~~i~~~~~ai~~v~  397 (397)
T d3tata_         355 -SAAQVDRLREEFGVYLIASG---------RMCVAGLNTANVQRVAKAFAAVM  397 (397)
T ss_dssp             -CHHHHHHHTTTTCEECCSSS---------CCBTTSCCTTTHHHHHHHHHHHC
T ss_pred             -CHHHHHHHHHhCCEEeCCCC---------EEEeccCCHHHHHHHHHHHHHhC
Confidence             36788999999999999863         999976 8899999999998874

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.9e-31  Score=229.60  Aligned_cols=233  Identities=12%  Similarity=0.050  Sum_probs=173.7

Q ss_pred             CCCcccchhhhhhccCcccc--------cccChhhhcc---cCCCCceEEEEcCCCCCChhhHH--------HhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDYK--------FEGEANLWGN---ASSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~--------~~~d~~~l~~---~~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~   61 (259)
                      +|+|+.|...++..|.++..        +..+...+.+   ...++++++++++||||||.+++        ++|+++++
T Consensus       127 ~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~  206 (396)
T d2q7wa1         127 NPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGW  206 (396)
T ss_dssp             ESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred             cCCCccchHHHHHcCCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCe
Confidence            59999999999999987632        2334433333   23567889999999999999993        88999999


Q ss_pred             EEEeeccc--c--CCC-CC-C---CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhh-------hhhcCC
Q 024997           62 KSIYDHAY--F--WPH-FA-P---IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI-------SLNTMG  125 (259)
Q Consensus        62 ~vi~De~y--~--~~~-~~-~---~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~-------~~~~~~  125 (259)
                      +||+||+|  +  +.. .. .   ..+..++.+++.|+||.++++|+|+||++++. ..++.+....       .....+
T Consensus       207 ~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  285 (396)
T d2q7wa1         207 LPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVA-ADSETVDRAFSQMKAAIRANYSN  285 (396)
T ss_dssp             EEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEEC-SSHHHHHHHHHHHHHHHHTTTSS
T ss_pred             EEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccCCCccccccch-hHHHHHHHhhhhhhhhhhccccC
Confidence            99999999  2  211 11 1   11345778999999999999999999999984 6555544332       334567


Q ss_pred             CCHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC
Q 024997          126 VSRECQLRAFKLLKVVL-EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER  204 (259)
Q Consensus       126 ~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (259)
                      ++...|.++..++.... ....++++++.+++++++++.+.+.|+.++.       +  . .|..+.+++|+|.|+.+  
T Consensus       286 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-------~--~-~~~~~~~~~G~F~~~~l--  353 (396)
T d2q7wa1         286 PPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA-------N--R-DFSFIIKQNGMFSFSGL--  353 (396)
T ss_dssp             CCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTC-------C--S-CCTHHHHCCSSEEECCC--
T ss_pred             CCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------C--C-CcceecCCCeEEEeeCC--
Confidence            88888888777765211 0013456778888999999999999987652       0  0 03345778999999877  


Q ss_pred             CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHHh
Q 024997          205 EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDELI  256 (259)
Q Consensus       205 ~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~l  256 (259)
                       +.+++.++++++||.+.||.         |||++. ++++++.+.++|.+++
T Consensus       354 -~~e~~~~L~~e~gV~~~~g~---------Ri~~a~l~~~~i~~~~~ai~~v~  396 (396)
T d2q7wa1         354 -TKEQVLRLREEFGVYAVASG---------RVNVAGMTPDNMAPLCEAIVAVL  396 (396)
T ss_dssp             -CHHHHHHHHHHHCEECCTTC---------EEEGGGCCTTTHHHHHHHHHHHC
T ss_pred             -CHHHHHHHHHhCCEEECCCC---------EEEecCCCHHHHHHHHHHHHHhC
Confidence             46789999999999998853         999987 8999999999998874

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.96  E-value=2.6e-29  Score=215.97  Aligned_cols=232  Identities=14%  Similarity=0.029  Sum_probs=169.7

Q ss_pred             CCCcccchhhhhhccCccccc--------ccChhhhccc---CCCCceEEEEcCCCCCChhhHH--------HhhcCCCc
Q 024997            1 MPFYPLYQEQTDYFESVDYKF--------EGEANLWGNA---SSDTHLVEFVTAPNNPDGQMNK--------AVLKGPYA   61 (259)
Q Consensus         1 ~P~y~~~~~~~~~~g~~~~~~--------~~d~~~l~~~---~~~~~~~i~i~~p~NPtG~~~~--------~la~~~~~   61 (259)
                      +|+|+.|..+++..|.+...+        ..+.+.+++.   ..++++++++++||||||.+++        ++|+++++
T Consensus       124 ~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~  203 (394)
T d2ay1a_         124 DPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGA  203 (394)
T ss_dssp             ESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred             cccccchHHHHHHcCCEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceE
Confidence            599999999999999876432        3333334333   3567889999999999999993        89999999


Q ss_pred             EEEeeccc--c--CCC-CCCCC----CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHh-------hhhhcCC
Q 024997           62 KSIYDHAY--F--WPH-FAPIP----APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAY-------ISLNTMG  125 (259)
Q Consensus        62 ~vi~De~y--~--~~~-~~~~~----~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~-------~~~~~~~  125 (259)
                      +||+||+|  +  ... .....    ....+++++.|+||.++.+|+|+||++++. ..++.....       ......+
T Consensus       204 ~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  282 (394)
T d2ay1a_         204 LPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALC-ADAATRELAQGAMAFLNRQTYSF  282 (394)
T ss_dssp             EEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEEC-SSHHHHHHHHHHHHHHHHTTTSS
T ss_pred             EEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccccchhhch-hHHHHHHHhhhhhHhhhcccccc
Confidence            99999999  2  211 11111    234568999999999999999999999984 555544332       2334566


Q ss_pred             CCHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC
Q 024997          126 VSRECQLRAFKLLKVVL-EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER  204 (259)
Q Consensus       126 ~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (259)
                      ++...|.++...+.... .....++++..+++++++++.+.+.|+.++.-.          .|.++.+++|+|+|+++  
T Consensus       283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~----------~~~~~~~~~G~F~~~~l--  350 (394)
T d2ay1a_         283 PPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSD----------RFGFVAEHRGMFSRLGA--  350 (394)
T ss_dssp             CCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS----------TTTHHHHCCSSEEECCC--
T ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----------ceeeECCCceeEEecCc--
Confidence            77777877766665311 001234566677788888888888888754210          14456789999999877  


Q ss_pred             CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec-ChhhHHHHHHHHHHH
Q 024997          205 EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK-SQDDFDLLLHRLDEL  255 (259)
Q Consensus       205 ~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~-~~~~~~~~~~~l~~~  255 (259)
                       +.+++.++++++||.+.||.         |||++. ++++++.+.++|.++
T Consensus       351 -s~~~~~~L~~~~~V~~~~g~---------Ri~~a~l~~~~i~~l~~ai~~v  392 (394)
T d2ay1a_         351 -TPEQVKRIKEEFGIYMVGDS---------RINIAGLNDNTIPILARAIIEV  392 (394)
T ss_dssp             -CHHHHHHHHHHHCEECCTTC---------EEEGGGCCTTTHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHhCCEEecCCC---------EEEecCCCHHHHHHHHHHHHHh
Confidence             46788999999999999852         999987 999999999998875

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.93  E-value=6.8e-26  Score=192.62  Aligned_cols=224  Identities=12%  Similarity=0.052  Sum_probs=153.9

Q ss_pred             CCcccchhhhhhccCcccccccChhhhcccCCCCceEEEEcCCCCCChh-hH-----HHhhcCCCcEEEeeccc----cC
Q 024997            2 PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQ-MN-----KAVLKGPYAKSIYDHAY----FW   71 (259)
Q Consensus         2 P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~-~~-----~~la~~~~~~vi~De~y----~~   71 (259)
                      |+|+.|....++.|++.... -|+++|++.+++++++|++++|+||++. ..     .++|+++|+++|+||+|    |.
T Consensus       101 ~~~~~~~~~~~l~g~~~v~~-~d~e~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~  179 (366)
T d2aeua1         101 PGHPSIERSCKIVNAKYFES-DKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRL  179 (366)
T ss_dssp             SCCTHHHHHHHHTTCEEEEE-SCHHHHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHH
T ss_pred             CcchhHHHHHHhcCCeEECC-CCHHHHHHhcCCCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccc
Confidence            78999999999888876443 3788899999999999999999998654 33     38999999999999999    21


Q ss_pred             CCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHH
Q 024997           72 PHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFE  151 (259)
Q Consensus        72 ~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~  151 (259)
                      ....+.....+.+++++|+||.+  +|+|+||++++ ++++++++......+.+++++.|+++.+.++..    ....++
T Consensus       180 ~~~~~~~~~~~~di~~~S~sK~~--~g~~~G~i~~~-~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl----~~~r~~  252 (366)
T d2aeua1         180 LFNQPPALKLGADLVVTSTDKLM--EGPRGGLLAGK-KELVDKIYIEGTKFGLEAQPPLLAGIYRALKNF----NLERIR  252 (366)
T ss_dssp             HTTCCCHHHHTCSEEEEETTSSS--SSCSCEEEEEE-HHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHC----CHHHHH
T ss_pred             cccCCCHhhcCceEEEecccccc--cccceeEEEec-HHHHHHHHHHHhcccccCCHHHHHHHHHHHHhc----cHHHHH
Confidence            11111111223468999999976  48999999999 799999999888888889999999998888742    111111


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-------chHHHHHHHHHcCeeeecC
Q 024997          152 FGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-------EDKDCYGILKAAKIIGREG  224 (259)
Q Consensus       152 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ll~~~gi~~~~g  224 (259)
                      +..+..++....+.+.+....    ..+++.   ......+.++.++|......       +.+++..+++++||.+.||
T Consensus       253 ~~~~~~~~i~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip~  325 (366)
T d2aeua1         253 KAFERAKNFDLSKIEKLNKEL----KAIDDN---INIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITV  325 (366)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHH----TTTCTT---EEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTT
T ss_pred             HHHHHHHHHHHHHHhhhhccc----cccccc---cCcccccCccchhccCCCcceeecccCHHHHHHHHHHhCCEEEEEC
Confidence            111111111111222222111    111110   01223345667777765443       3467888999999999999


Q ss_pred             CcccCCCCeEEEEeec
Q 024997          225 KKFRAEARFVRLSLLK  240 (259)
Q Consensus       225 ~~f~~~~~~~Ris~~~  240 (259)
                      ..|+.+.+++|||++.
T Consensus       326 ~~~p~~~~~lRis~~~  341 (366)
T d2aeua1         326 AGMPGASKSLRIDLTS  341 (366)
T ss_dssp             SSSCSSCCSEEEETTS
T ss_pred             CCCCCCCCEEEEeccc
Confidence            9997778899999976

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.74  E-value=2.5e-17  Score=139.78  Aligned_cols=220  Identities=11%  Similarity=0.005  Sum_probs=146.5

Q ss_pred             hccCccccc-ccChhhhcccC---C-CCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc-c---CCCCCCCC
Q 024997           13 YFESVDYKF-EGEANLWGNAS---S-DTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY-F---WPHFAPIP   78 (259)
Q Consensus        13 ~~g~~~~~~-~~d~~~l~~~~---~-~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y-~---~~~~~~~~   78 (259)
                      +.+.+...| ..|++.+++.+   . ...++|++..-.+.+|.+.+     +++++||+++++||++ |   ++....+.
T Consensus       150 ls~a~~~~f~Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~  229 (396)
T d2bwna1         150 RNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA  229 (396)
T ss_dssp             HSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH
T ss_pred             ccccCceEeecchHHHhhhHHhhhcccCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccch
Confidence            334444334 45666666554   2 35678888888999999873     8999999999999999 4   33332222


Q ss_pred             ----CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhh--cCCCCHHHHHHHHHHHHHHHhcCCcchHHH
Q 024997           79 ----APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN--TMGVSRECQLRAFKLLKVVLEDGGNNIFEF  152 (259)
Q Consensus        79 ----~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  152 (259)
                          ...+.+++++||||+||..|   |++.++ +++++.+++.....  +.+.++....++.+.++-.    ......+
T Consensus       230 ~~~~~~~~~di~~gTlsKa~g~~G---g~v~~~-~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~----~~~~~~~  301 (396)
T d2bwna1         230 ERDGLMHRIDIFNGTLAKAYGVFG---GYIAAS-ARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFL----KTAEGQK  301 (396)
T ss_dssp             HHHTCGGGCSEEEEESSSTTCSCC---EEEEEC-HHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHH----TSHHHHH
T ss_pred             hhcCCceeeeeeeecccccccccc---cccchh-HHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHh----hcchHHH
Confidence                13456899999999999999   999988 79999998776543  3334444444444444432    2223455


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHcCeeeecCCcccC-
Q 024997          153 GYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAKIIGREGKKFRA-  229 (259)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~g~~f~~-  229 (259)
                      .++.++.+.+.+...+..++              +......++.. -+.+.+.  ..+...++|+++||.+.+...... 
T Consensus       302 ~r~~l~~~~~~~~~~l~~~g--------------~~~~~~~spIv-pv~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp  366 (396)
T d2bwna1         302 LRDAQQMHAKVLKMRLKALG--------------MPIIDHGSHIV-PVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVP  366 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT--------------CCBCCCSSSCE-EEECCCHHHHHHHHHHHHHHHCEECCEECTTTSC
T ss_pred             HHHHHHHHHHHHHHHHHhcC--------------CCcCCCCCCEE-EEEeCCHHHHHHHHHHHHHhCCEEEEEECCCcCC
Confidence            67778888888888888765              22222223322 2223322  245566778888999877543332 


Q ss_pred             -CCCeEEEEeec--ChhhHHHHHHHHHHH
Q 024997          230 -EARFVRLSLLK--SQDDFDLLLHRLDEL  255 (259)
Q Consensus       230 -~~~~~Ris~~~--~~~~~~~~~~~l~~~  255 (259)
                       +...+||++..  ++++|+++++.|+++
T Consensus       367 ~g~~rlRi~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         367 RGTERLRFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             TTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence             35679999965  999999999999875

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=3.4e-17  Score=139.50  Aligned_cols=236  Identities=12%  Similarity=0.049  Sum_probs=143.0

Q ss_pred             CCcccchhhhhh---ccCcc------cccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeec
Q 024997            2 PFYPLYQEQTDY---FESVD------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDH   67 (259)
Q Consensus         2 P~y~~~~~~~~~---~g~~~------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De   67 (259)
                      +.|+.+...++.   .|.++      ....+|++.+++.++++|+++++++|+||||.++     .++|+++|+++++|.
T Consensus       101 ~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~  180 (391)
T d1p3wa_         101 TEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDA  180 (391)
T ss_dssp             TSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEEC
T ss_pred             cccchHHHHHHHHHHcCCEEEEeCCCCCCeEcHHHHHHhCCCCcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEee
Confidence            556665554443   35544      1246788899999999999999999999999988     388999999999999


Q ss_pred             ccc-CCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhh-------hhhcCCCCHHHHHHHHHHHH
Q 024997           68 AYF-WPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI-------SLNTMGVSRECQLRAFKLLK  139 (259)
Q Consensus        68 ~y~-~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~q~~~~~~l~  139 (259)
                      +|. +.....+ ...+.++++.|..|.+|.+|  +|+++... +.........       .......+.....+....+.
T Consensus       181 ~~~~g~~~~d~-~~~~~D~~~~s~~k~~g~~g--~g~~~~~~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~  256 (391)
T d1p3wa_         181 TQSVGKLPIDL-SQLKVDLMSFSGHKIYGPKG--IGALYVRR-KPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYR  256 (391)
T ss_dssp             TTTBTTBCCCT-TTSCCSEEEEESTTTTSCSS--CEEEEECB-TTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHH
T ss_pred             ccccCCccccc-hhccccccccccccccCCCc--eEEEEEec-chhcccCCcccCCccccCcccCcchhhhhhhhhhhhh
Confidence            883 2111222 33456788999999998887  68877773 4333322111       11112223333333333333


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCe
Q 024997          140 VVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKI  219 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi  219 (259)
                      .     .........+++++....+.+.|..+....+...          ........+.+..+....+.+...+  .++
T Consensus       257 ~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l--~~i  319 (391)
T d1p3wa_         257 I-----AKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGD----------LEHGAPNILNVSFNYVEGESLIMAL--KDL  319 (391)
T ss_dssp             H-----HHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSC----------TTTSCTTEEEEEETTSCHHHHHHHT--TTE
T ss_pred             H-----HHHHhhHHHHHHHHHHHHHHHHHHhhcCeeeccc----------ccccCceEEEEEeCCCChHHHHHHh--CCC
Confidence            2     1123344455666666666666665553221110          1111222333444544455554444  478


Q ss_pred             eeecCCcccC------------------CCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          220 IGREGKKFRA------------------EARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       220 ~~~~g~~f~~------------------~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      .++.|..+..                  ..+.+|+|++.  +.++++.+++.|++++++
T Consensus       320 ~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~  378 (391)
T d1p3wa_         320 AVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGR  378 (391)
T ss_dssp             ECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence            8877765432                  12579999976  889999999999998764

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.70  E-value=8e-16  Score=129.31  Aligned_cols=221  Identities=13%  Similarity=0.093  Sum_probs=151.1

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEecccccc-CC
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLT-GH   96 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~-g~   96 (259)
                      .|.+++++++++++++|++.+|+||+..+.     .++|+++|+++|+|+.+ ......-+-..+-+|++.|.||.+ |.
T Consensus       121 ~~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~-atP~~~~Pl~~GaDiVvhS~TKyi~Gh  199 (380)
T d1ibja_         121 TKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSI-MSPVLSRPLELGADIVMHSATKFIAGH  199 (380)
T ss_dssp             TSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTT-TCTTTCCGGGTTCSEEEEETTTTTTCS
T ss_pred             chHHHHHHHhccCccEEEeccccccccccccHHHHHHHHHHcCCeEEeeccc-cccccccccccCCCEEEecccceeccc
Confidence            456778888899999999999999999998     48999999999999988 222211122345689999999999 45


Q ss_pred             CcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 024997           97 AGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSL  176 (259)
Q Consensus        97 ~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  176 (259)
                      ..+-.|.++..++++.+.++..........++...+.+.+.++         .+..++++..++...+.+.|++.+.+..
T Consensus       200 sDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~---------Tl~lRm~~~~~nA~~lA~~L~~hp~V~~  270 (380)
T d1ibja_         200 SDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIK---------TMALRIEKQQENARKIAMYLSSHPRVKK  270 (380)
T ss_dssp             SCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHT---------THHHHHHHHHHHHHHHHHHHHTCTTCCE
T ss_pred             cCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcch---------hhhhhHHHHHHHHHHHHHHHHhCCCeeE
Confidence            6667788777767788888888888888899988887777776         5677899999999999999999998765


Q ss_pred             cccccccccc----ceeeCCCCCeeEEEecCCCchHHHHHHHHHcCe---eeecCC------------cc----------
Q 024997          177 QEIAPQYCTY----FKKIRPPSPAYAWVKCEREEDKDCYGILKAAKI---IGREGK------------KF----------  227 (259)
Q Consensus       177 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi---~~~~g~------------~f----------  227 (259)
                      ...|+...+.    .+.....+|..+.+.+.  +.+...+++++-.+   .+.-|.            +.          
T Consensus       271 V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~--~~~~a~~f~d~l~l~~~a~SlG~~~SLi~~p~~~th~~~~~e~r~~~  348 (380)
T d1ibja_         271 VYYAGLPDHPGHHLHFSQAKGAGSVFSFITG--SVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREAR  348 (380)
T ss_dssp             EECTTSTTSTTHHHHTTTCSCCCSEEEEECS--CHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSS
T ss_pred             EeccccccCcccccccccccccccccccccc--HHHHHHHHHHhCCcCeEeeccCCccccccCchhhhhhcCCHHHHHHc
Confidence            5544321111    11111223333334444  34555566555443   111121            01          


Q ss_pred             cCCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          228 RAEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       228 ~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      +..++.+|||++-  |+.+++++-|.+.|+
T Consensus       349 Gi~~~lvRlSvGl--E~~eDLi~Dl~qAl~  376 (380)
T d1ibja_         349 GLTEDLVRISAGI--EDVDDLISDLDIAFK  376 (380)
T ss_dssp             SCCTTCEEEECCS--SCHHHHHHHHHHHHH
T ss_pred             CCCcCeEEEEecc--CCHHHHHHHHHHHHH
Confidence            1125779999987  444445555555543

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=2.6e-16  Score=133.59  Aligned_cols=218  Identities=13%  Similarity=0.010  Sum_probs=142.2

Q ss_pred             cCccccc-ccChhhhcccC---CCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccc-c---CCCCCCCC--C
Q 024997           15 ESVDYKF-EGEANLWGNAS---SDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAY-F---WPHFAPIP--A   79 (259)
Q Consensus        15 g~~~~~~-~~d~~~l~~~~---~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y-~---~~~~~~~~--~   79 (259)
                      +.....| ..|+++|++.+   .++.++|++..+++++|.+.+     ++|++||+++++||++ +   ++......  .
T Consensus       143 ~~~~~~~~hnd~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~  222 (383)
T d1bs0a_         143 PSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQ  222 (383)
T ss_dssp             SSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHT
T ss_pred             CCcceEecchHHHHHHHHhcccCCCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHc
Confidence            3333334 46777787766   456788899999999999973     8999999999999999 3   22222111  1


Q ss_pred             CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhh--cCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 024997           80 PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN--TMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTM  157 (259)
Q Consensus        80 ~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  157 (259)
                      .....+++.|+||.+|..|   |++.++ .++++.++......  +...+++.-.++.+.++-.    ........++++
T Consensus       223 ~~~~~~~~~t~~ka~g~~G---g~v~~~-~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~----~~~~~~~~~~~l  294 (383)
T d1bs0a_         223 KVKPELLVVTFGKGFGVSG---AAVLCS-STVADYLLQFARHLIYSTSMPPAQAQALRASLAVI----RSDEGDARREKL  294 (383)
T ss_dssp             TCCCSEEEEESSSTTSSCC---EEEEEC-HHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH----HSHHHHHHHHHH
T ss_pred             CCccccccccccccccccc---cccccc-hhHHHHHHhhchhhhhcccccchHHHHHHHHHHHH----HhhhhHHHHHHH
Confidence            2345677889999999888   999999 79999888764432  3334444434444444421    122345567788


Q ss_pred             HHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCe-eEEEecCCCchHHHHHHHHHcCeeeecCCcccC--CCCeE
Q 024997          158 KKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPA-YAWVKCEREEDKDCYGILKAAKIIGREGKKFRA--EARFV  234 (259)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~--~~~~~  234 (259)
                      .++..++.+.|++++              +......+++ .+++.-+. ....+.+.|.++||.+.+......  +...+
T Consensus       295 ~~~~~~~~~~l~~~g--------------~~~~~~~s~Ii~v~~g~~~-~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~l  359 (383)
T d1bs0a_         295 AALITRFRAGVQDLP--------------FTLADSCSAIQPLIVGDNS-RALQLAEKLRQQGCWVTAIRPPTVPAGTARL  359 (383)
T ss_dssp             HHHHHHHHHHHTTSS--------------CEECSCCSSBCCEEEESHH-HHHHHHHHHHHTTEECCEECTTSSCTTCEEE
T ss_pred             HHHHHHHHHHHHhcC--------------CccCCCCCCEEEEEECCHH-HHHHHHHHHHHCCceEEEEcCCCCCCCCceE
Confidence            888899999888765              2222333332 23332211 122344455578999987442222  34569


Q ss_pred             EEEeec--ChhhHHHHHHHHHHH
Q 024997          235 RLSLLK--SQDDFDLLLHRLDEL  255 (259)
Q Consensus       235 Ris~~~--~~~~~~~~~~~l~~~  255 (259)
                      ||++..  ++++++.+++.|+.+
T Consensus       360 Ri~~~a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         360 RLTLTAAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             CCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhc
Confidence            999965  999999999998764

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.69  E-value=2.6e-16  Score=133.34  Aligned_cols=210  Identities=13%  Similarity=0.079  Sum_probs=137.7

Q ss_pred             hhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcC----CCcEEEeecccc-CCCCCCCCCCCCCeEEEecccccc
Q 024997           25 ANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKG----PYAKSIYDHAYF-WPHFAPIPAPADEELMIFTISKLT   94 (259)
Q Consensus        25 ~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~----~~~~vi~De~y~-~~~~~~~~~~~~~~i~~~S~SK~~   94 (259)
                      .+.+++.++++++++++++||||||.+++     ++|++    +++++++|.++- +.....+ ...+.++++.|+.|.+
T Consensus       135 ~~~l~~~i~~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~-~~~~~D~~~~s~~K~~  213 (381)
T d1elua_         135 AAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDF-SRLEVDYYAFTGHKWF  213 (381)
T ss_dssp             HHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCT-TTSCCSEEEEESSSTT
T ss_pred             HHHHHhhhcccccccccccccccccccchhhHHHHHHhhcccccccccccccccccccccccc-cccccccccccccccc
Confidence            35577788899999999999999999983     77765    579999999872 2111112 3446789999999998


Q ss_pred             CCCcceEEEEEecCHHHHHHHHHhh----------------------hhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHH
Q 024997           95 GHAGSRFGWAVIKDEAVYQRMSAYI----------------------SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEF  152 (259)
Q Consensus        95 g~~G~R~G~i~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  152 (259)
                      +. ..++|++++. ++..+.+....                      ......++.....++.++++...   .....+.
T Consensus       214 ~~-p~G~g~l~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~---~~g~~~~  288 (381)
T d1elua_         214 AG-PAGVGGLYIH-GDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQ---RQGTAEE  288 (381)
T ss_dssp             CC-CTTCEEEEEC-TTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHH---HHCCHHH
T ss_pred             cc-cchhhHHHhh-HHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHH---Hhccccc
Confidence            63 2347888888 46665543210                      01111234444444445554321   1122344


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCC
Q 024997          153 GYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEA  231 (259)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~  231 (259)
                      ..++..++++.+.+.|+.++++.+.          ....+.++ ++++.++.. +.+.+.+.|+++||.++.   ++ .+
T Consensus       289 ~~~~~~~~~~~l~~~L~~~~~~~~~----------~~~~~~~~-~vsf~~~~~~~~~~i~~~L~~~gi~v~~---~~-~~  353 (381)
T d1elua_         289 RYQAICQRSEFLWRGLNQLPHVHCL----------ATSAPQAG-LVSFTVDSPLGHRAIVQKLEEQRIYLRT---IA-DP  353 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTEEES----------CSSCCSSS-EEEEEECSSSCHHHHHHHHHHTTEECEE---ET-TT
T ss_pred             chhhhhhHHHHHHHHHhcCCCeEec----------CCCCcccc-EEEEEcCCCCCHHHHHHHHHhCCcEEEe---cC-CC
Confidence            5677888889999999988753321          11234444 444455443 456777888899998865   22 35


Q ss_pred             CeEEEEeec--ChhhHHHHHHHHHHH
Q 024997          232 RFVRLSLLK--SQDDFDLLLHRLDEL  255 (259)
Q Consensus       232 ~~~Ris~~~--~~~~~~~~~~~l~~~  255 (259)
                      +++|+|++.  +.++++.+++.|+++
T Consensus       354 ~~lRis~~~~nt~edid~ll~~l~e~  379 (381)
T d1elua_         354 DCIRACCHYITDEEEINHLLARLADF  379 (381)
T ss_dssp             TEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             CEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            899999875  889999999999875

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.67  E-value=5.6e-16  Score=130.55  Aligned_cols=221  Identities=14%  Similarity=0.180  Sum_probs=147.0

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEecccccc-CC
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLT-GH   96 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~-g~   96 (259)
                      -|.+++++++++++++|++.+|+||+..+.     .++|+++|+++++|+.| ......-+-..+-+|++.|.||.+ |.
T Consensus       132 ~d~~~~~~ai~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~-atP~~~~Pl~~GaDivihS~TKyi~Gh  210 (392)
T d1gc0a_         132 ADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTY-CTPYLQRPLELGADLVVHSATKYLSGH  210 (392)
T ss_dssp             TCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTT-THHHHCCGGGGTCSEEEEETTTTTTCS
T ss_pred             cCHHHHHHhCCCCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCc-cCccccChHHhCCCEEEEecceeecCC
Confidence            466889999999999999999999999998     48999999999999988 111111111234579999999999 56


Q ss_pred             CcceEEEEEecCHHHHHHHH--HhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024997           97 AGSRFGWAVIKDEAVYQRMS--AYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRF  174 (259)
Q Consensus        97 ~G~R~G~i~~~~~~~~~~~~--~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  174 (259)
                      ..+-.|.+++. ++.+.+.+  ..+...+..+++...+.+.+.++         .+..++++..++...+.+.|++.+.+
T Consensus       211 sd~~~G~v~~~-~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~---------TL~lRm~~~~~nA~~lA~~L~~hp~V  280 (392)
T d1gc0a_         211 GDITAGIVVGS-QALVDRIRLQGLKDMTGAVLSPHDAALLMRGIK---------TLNLRMDRHCANAQVLAEFLARQPQV  280 (392)
T ss_dssp             SSCCCEEEEEC-HHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHT---------THHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             cccccccccch-hHHHHHHHHHHHHHccCCcCChhhHHHHHhccc---------cHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            77888888888 67776654  44555678888988777777766         67778999999999999999999876


Q ss_pred             ccccccccccc----cceeeCCCCCeeEEEecCCCchHHHHHHHHHcCe---eeecCCc---------------------
Q 024997          175 SLQEIAPQYCT----YFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKI---IGREGKK---------------------  226 (259)
Q Consensus       175 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi---~~~~g~~---------------------  226 (259)
                      .....|.....    .++.....+|..+.+.++. +.+.+.++++.-.+   ...-|..                     
T Consensus       281 ~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~-~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~  359 (392)
T d1gc0a_         281 ELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG-GIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERA  359 (392)
T ss_dssp             EEEEEC----------------CCTTEEEEEETT-HHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHH
T ss_pred             cEEeeccccCCcccccccccccCCCcEEEEEEeC-CHHHHHHHHHhCCcceEeeccCCcChhhcCccccccccCCHHHHH
Confidence            54444421111    1222222334445566653 34555566655544   2222211                     


Q ss_pred             -ccCCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          227 -FRAEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       227 -f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                       .+.+++.+|||++-  |+.+++++-|.+.|+
T Consensus       360 ~~Gi~~~liRlSVGl--Ed~eDLi~Dl~~AL~  389 (392)
T d1gc0a_         360 HYGISEGLVRLSVGL--EDIDDLLADVQQALK  389 (392)
T ss_dssp             HTTCCTTEEEEECCS--SCHHHHHHHHHHHHH
T ss_pred             HcCCCcCeEEEEeee--CCHHHHHHHHHHHHH
Confidence             11135789999987  444455555555554

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=7.4e-16  Score=131.81  Aligned_cols=215  Identities=16%  Similarity=0.100  Sum_probs=145.6

Q ss_pred             ccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCC-CCCCCeEEEeccccccC
Q 024997           22 EGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIP-APADEELMIFTISKLTG   95 (259)
Q Consensus        22 ~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~-~~~~~~i~~~S~SK~~g   95 (259)
                      .+|.+.+++++++++++++++..+|.||.++     .++|+++|+++++|.++..+. .++. ...+.++++.|+.|.+|
T Consensus       150 ~~~~~~~~~~i~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~-~~id~~~~~~D~~~~s~hK~~G  228 (405)
T d1jf9a_         150 TLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMH-HPVDVQALDCDFYVFSGHKLYG  228 (405)
T ss_dssp             CBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTT-SCCCHHHHTCSEEEEEGGGTTS
T ss_pred             cCCHHHHHHhccCCcEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccc-cccchhhcCCceeecccccccc
Confidence            5677888888999999999999999999998     389999999999999873221 2221 24456899999999999


Q ss_pred             CCcceEEEEEecCHHHHHHHHHhh----------------------hhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHH
Q 024997           96 HAGSRFGWAVIKDEAVYQRMSAYI----------------------SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFG  153 (259)
Q Consensus        96 ~~G~R~G~i~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~  153 (259)
                      .+|  +|+++.. ++..+.+....                      +......+.....++..+++...+    .-.+..
T Consensus       229 p~G--~g~l~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~----~g~~~i  301 (405)
T d1jf9a_         229 PTG--IGILYVK-EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSA----LGLNNI  301 (405)
T ss_dssp             CSS--CEEEEEC-HHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHH----HCHHHH
T ss_pred             CCC--ceeeeec-hhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHH----hChHHH
Confidence            888  8999998 67766542210                      001112334444444455543211    113344


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCccccccccccccceeeC-CCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccC---
Q 024997          154 YNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIR-PPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRA---  229 (259)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~---  229 (259)
                      .++.+...+.+...++.++..             .... ...+..+.+.++..+.+.+...|+++||.++.|+.+..   
T Consensus       302 ~~~~~~L~~~~~~~l~~~~~~-------------~~~~~~~r~~ivsf~~~~~~~~~~~~~L~~~gI~v~~G~~c~~~~~  368 (405)
T d1jf9a_         302 AEYEQNLMHYALSQLESVPDL-------------TLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLM  368 (405)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTE-------------EEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHH
T ss_pred             HHHHHHHHHHHHhhhhcCCcc-------------cccCCcCcCcEEEEEcCCCCHHHHHHHHHHCCcEEEccchhhhhHH
Confidence            445555555566666655431             1112 22233445667766667777888899999999887652   


Q ss_pred             ----CCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          230 ----EARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       230 ----~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                          .++.+|+|++.  +.++++.+++.|+++++
T Consensus       369 ~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r  402 (405)
T d1jf9a_         369 AYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHR  402 (405)
T ss_dssp             HHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                25789999976  88999999999988865

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.66  E-value=1.7e-16  Score=133.42  Aligned_cols=232  Identities=13%  Similarity=0.098  Sum_probs=135.0

Q ss_pred             CCcccchhhhhhccCcc--------cccccChhhhcccCC-----CCceEEEEcCCCCCChhhH-----HHhhcCCCcEE
Q 024997            2 PFYPLYQEQTDYFESVD--------YKFEGEANLWGNASS-----DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKS   63 (259)
Q Consensus         2 P~y~~~~~~~~~~g~~~--------~~~~~d~~~l~~~~~-----~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~v   63 (259)
                      |+|+.....++..|..+        ..+.+|++.+++.++     .+++++++++|+||||.+.     .++|+++|+++
T Consensus        94 ~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~l  173 (364)
T d2e7ja1          94 NCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPL  173 (364)
T ss_dssp             TCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCE
T ss_pred             ccccccchHHHhccceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccchh
Confidence            45544445566667654        235788888988872     3467889999999999997     38999999999


Q ss_pred             EeeccccCCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhh--------hcCCCCHHHHHHH
Q 024997           64 IYDHAYFWPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL--------NTMGVSRECQLRA  134 (259)
Q Consensus        64 i~De~y~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~q~~~  134 (259)
                      ++|++|-... .+.. ...+.+++++|++|.++.+| ++||++++ +++++.+......        ...........++
T Consensus       174 ivD~a~~~g~-~~~~~~~~g~D~~~~S~~K~~~~~g-~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (364)
T d2e7ja1         174 LVNGAYAIGR-MPVSLKEIGADFIVGSGHKSMAASG-PIGVMGMK-EEWAEIVLRRSEKYKNKEVELLGCTARGATIITL  250 (364)
T ss_dssp             EEECTTTBTT-BCCCHHHHTCSEEEEEHHHHSSCCS-SCEEEEEC-TTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHH
T ss_pred             hccccchhhh-hhhcccccccceeeeccccccCCCC-CEEEEEEC-HHHHHHHHhhccccCcccccccccccchhHHHHH
Confidence            9999992111 1121 12235689999999998666 79999999 4777655332111        0011112222333


Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---------
Q 024997          135 FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---------  205 (259)
Q Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  205 (259)
                      ...++..     .+.+....+.+ ++.+.+...++.++.   ..+.+         .+......+...+..         
T Consensus       251 ~~~l~~~-----~~~~~~~~~~~-~~~~~~~~~l~~~g~---~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  312 (364)
T d2e7ja1         251 MASFPHV-----RERIKRWDEEV-EKARRFAAEMEKLGI---KQLGD---------NPHNHDLMFFHAEVLYEISKKAKG  312 (364)
T ss_dssp             HHHHHHH-----HHHGGGHHHHH-HHHHHHHHHHHHTTC---EEESS---------SSCCSSEEEEECHHHHHHHHHSSS
T ss_pred             HHHHHHH-----HHHHHHHHHHH-HHHHHHHHHHHHcCC---eecCC---------CCCCcceEEEeccchHHHHHHhhc
Confidence            3344321     11222233333 445556666766542   11111         122222233332211         


Q ss_pred             chHHHHHHHHHcCeeeecCCcccCCCCeEEEEe-ecChhhHHHHHHHHHHHhhh
Q 024997          206 EDKDCYGILKAAKIIGREGKKFRAEARFVRLSL-LKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       206 ~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~-~~~~~~~~~~~~~l~~~l~~  258 (259)
                      ........+.+.|+....   .+. ...+|++. +.+++++++++++|++++++
T Consensus       313 ~~~~~~~~l~~~~~~~~~---~g~-~~~~~~~~~~~t~edid~~~~~l~ei~~~  362 (364)
T d2e7ja1         313 GRFFLYRELKSRKIHGIK---PGL-TRYFKLSTYGLSDEEVDYVLNAFKEIIEK  362 (364)
T ss_dssp             GGGHHHHHHHHTTEECSC---TTC-CSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHhcCCceec---CCC-cceEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence            223455556666764321   222 35667774 44889999999999999875

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.6e-15  Score=127.49  Aligned_cols=187  Identities=12%  Similarity=0.090  Sum_probs=135.0

Q ss_pred             ccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEecccccc-C
Q 024997           22 EGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLT-G   95 (259)
Q Consensus        22 ~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~-g   95 (259)
                      ..|.+++++.+++++++|++.+|+|||..+.     .++|+++|+++|+|+.+ ......-+-..+-+|++.|.||.+ |
T Consensus       122 ~~d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~-atP~~~~Pl~~GaDiVvhS~TKyi~G  200 (384)
T d1cs1a_         122 QGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTF-LSPALQNPLALGADLVLHSCTKYLNG  200 (384)
T ss_dssp             TTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT-TCTTTCCGGGGTCSEEEEETTTTTTC
T ss_pred             CCCHHHHHhhccccccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccc-cCcccccccccCCCEEEEcccccccc
Confidence            4567788888899999999999999999998     48999999999999988 222212222345689999999999 5


Q ss_pred             CCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 024997           96 HAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFS  175 (259)
Q Consensus        96 ~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  175 (259)
                      ...+=.|.++..++++.+.+...........++...+.+.+.++         .+..++++..++...+.+.|++.+.+.
T Consensus       201 hsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~---------TL~lRm~~~~~nA~~lA~~L~~hp~V~  271 (384)
T d1cs1a_         201 HSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR---------TLVPRMELAQRNAQAIVKYLQTQPLVK  271 (384)
T ss_dssp             SSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT---------THHHHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred             CCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccc---------hhHHHHHHHHHHHHHHHHhcccCCcee
Confidence            66677788888767888888887777788889988887777666         577789999999999999999998765


Q ss_pred             ccccccccccc----ceeeCCCCCeeEEEecCCCchHHHHHHHHHcCe
Q 024997          176 LQEIAPQYCTY----FKKIRPPSPAYAWVKCEREEDKDCYGILKAAKI  219 (259)
Q Consensus       176 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi  219 (259)
                      ....|+...+.    ++.....+|..+.+.+.. +.+.+.+++++-.+
T Consensus       272 ~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~-~~~~a~~f~~~L~l  318 (384)
T d1cs1a_         272 KLYHPSLPENQGHEIAARQQKGFGAMLSFELDG-DEQTLRRFLGGLSL  318 (384)
T ss_dssp             EEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-CHHHHHHHHHTCSS
T ss_pred             eeeeccccchhHHHHHHhhcCCCcceeEEeecc-hHHHHHHHHHhCCc
Confidence            44444311111    111122234444555544 35566667765544

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=3.1e-15  Score=127.57  Aligned_cols=211  Identities=10%  Similarity=0.014  Sum_probs=138.2

Q ss_pred             ccChhhhcccC------CCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc-c---CCCCCCC----CCCCC
Q 024997           22 EGEANLWGNAS------SDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY-F---WPHFAPI----PAPAD   82 (259)
Q Consensus        22 ~~d~~~l~~~~------~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y-~---~~~~~~~----~~~~~   82 (259)
                      ..|.+++++.+      .+...+|++.+..+..|.+.     .++|+++|+++|+||++ +   ++.....    ....+
T Consensus       158 ~~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~  237 (401)
T d1fc4a_         158 NNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGR  237 (401)
T ss_dssp             TTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTC
T ss_pred             CCChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCC
Confidence            45665666544      23456766666677788763     38999999999999999 3   2322221    12446


Q ss_pred             CeEEEeccccccC-CCcceEEEEEecCHHHHHHHHHhhh--hhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 024997           83 EELMIFTISKLTG-HAGSRFGWAVIKDEAVYQRMSAYIS--LNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKK  159 (259)
Q Consensus        83 ~~i~~~S~SK~~g-~~G~R~G~i~~~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  159 (259)
                      .+++++|+||.+| ..|   |++.++ +++++.+.....  ..+.+.+++...++...++..      ....+.++++++
T Consensus       238 ~dii~~tl~Ka~gg~~G---g~v~g~-~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~------~~~~~~~~~l~~  307 (401)
T d1fc4a_         238 VDIITGTLGKALGGASG---GYTAAR-KEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV------EAGSELRDRLWA  307 (401)
T ss_dssp             CSEEEEESSSTTCSSSC---EEEEEC-HHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH------HTCHHHHHHHHH
T ss_pred             CeEEEeecccccccCCc---ccccCC-HHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhccc------ccCHHHHHHHHH
Confidence            6899999999994 345   999988 799998876543  244556666666666666532      123456889999


Q ss_pred             HHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHcCeeeecCCcccC--CCCeEE
Q 024997          160 RWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAKIIGREGKKFRA--EARFVR  235 (259)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~g~~f~~--~~~~~R  235 (259)
                      +.+.+.+.+...+.              .....++++. .+.+.+.  ..++... |.++||.+.+-.....  +...+|
T Consensus       308 ~~~~~~~~l~~~g~--------------~~~~~~~pIv-~v~~~~~~~a~~~~~~-L~~~Gi~v~~i~~PtVp~g~~~lR  371 (401)
T d1fc4a_         308 NARQFREQMSAAGF--------------TLAGADHAII-PVMLGDAVVAQKFARE-LQKEGIYVTGFFYPVVPKGQARIR  371 (401)
T ss_dssp             HHHHHHHHHHHTTC--------------CBCCSSSSEE-EEEEECHHHHHHHHHH-HHHTTEECCEECTTSSCTTCEEEE
T ss_pred             HHHHHHhhhcccCC--------------ccCCCCCCEE-EEEECCHHHHHHHHHH-HHHCCceEEeECCCCCCCCCceEE
Confidence            99999999987652              2222333332 2223222  2244444 5578999876322111  345699


Q ss_pred             EEeec--ChhhHHHHHHHHHHHhhh
Q 024997          236 LSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       236 is~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      +++..  ++++++++++.|+++.++
T Consensus       372 i~~~a~hT~edId~~v~al~ev~~~  396 (401)
T d1fc4a_         372 TQMSAAHTPEQITRAVEAFTRIGKQ  396 (401)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHH
Confidence            99864  999999999999998764

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.65  E-value=6.3e-15  Score=124.28  Aligned_cols=212  Identities=12%  Similarity=0.069  Sum_probs=144.6

Q ss_pred             cCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEeccccccC-CCcceEEEE
Q 024997           31 ASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTG-HAGSRFGWA  104 (259)
Q Consensus        31 ~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~i  104 (259)
                      .+++++++|++.+|.||+..+.     .++|+++|+++|+|+.+ ......-+-..+-+|++.|.||.++ ...+-.|.+
T Consensus       149 ~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~-atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v  227 (398)
T d1qgna_         149 LNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTF-ATPLNQKALALGADLVLHSATKFLGGHNDVLAGCI  227 (398)
T ss_dssp             HHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT-TCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEE
T ss_pred             hccccceEEEccCccccccccchHHHHHHHHhhcCCEEEeccee-eccccCCchhhCCCEEEEechhhcCcccceeehhh
Confidence            3478999999999999999998     48999999999999988 2222111123456899999999994 555566777


Q ss_pred             EecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccc
Q 024997          105 VIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYC  184 (259)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  184 (259)
                      +.+ +++...++......+...++...+.+.+.++         .+..++++..++...+.+.|++.+.+.....|+...
T Consensus       228 ~~~-~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~---------TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s  297 (398)
T d1qgna_         228 SGP-LKLVSEIRNLHHILGGALNPNAAYLIIRGMK---------TLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQS  297 (398)
T ss_dssp             EEC-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHGG---------GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSS
T ss_pred             cch-hhhhhhhhhhcccCCCcCCHHHHHHHHhcch---------HHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCC
Confidence            777 7999999988888888899988777766665         677789999999999999999999765444443211


Q ss_pred             c----cceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCccc--------------------------CCCCeE
Q 024997          185 T----YFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFR--------------------------AEARFV  234 (259)
Q Consensus       185 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~--------------------------~~~~~~  234 (259)
                      +    .++.....+|..+.+.+.. +.+.+.+++++-.+.. .+.++|                          .+++.+
T Consensus       298 ~p~~~~~~~~~~g~g~~~sf~~~g-~~~~a~~f~~~L~l~~-~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~li  375 (398)
T d1qgna_         298 HPEHHIAKKQMTGFGGAVSFEVDG-DLLTTAKFVDALKIPY-IAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLV  375 (398)
T ss_dssp             STTHHHHHHHCSCCCSEEEEEESS-CHHHHHHHHHHCSSSE-ECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEE
T ss_pred             CcchhhhhhhcCCCCceeeeeecC-CHHHHHHHHHcCCcce-eeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEE
Confidence            1    1222222233344455543 4555666666554421 122221                          135789


Q ss_pred             EEEeecChhhHHHHHHHHHHHhh
Q 024997          235 RLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       235 Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                      |||++-  |+.+++++.|++.|+
T Consensus       376 RlSvGl--Ed~eDLi~Dl~~AL~  396 (398)
T d1qgna_         376 RFSFGV--EDFDDLKADILQALD  396 (398)
T ss_dssp             EEECCS--SCHHHHHHHHHHHHH
T ss_pred             EEEecc--CCHHHHHHHHHHHHh
Confidence            999987  344445555555543

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.65  E-value=3.9e-15  Score=125.43  Aligned_cols=220  Identities=11%  Similarity=0.116  Sum_probs=148.9

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEecccccc-CC
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLT-GH   96 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~-g~   96 (259)
                      -|++.+++++++++++|++.+|.||+..+.     .++|+++|+++++|+.+ ......-+-..+-+|++.|.+|.+ |.
T Consensus       136 ~d~~~~~~~i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~-atP~~~~Pl~~GaDivihS~TKyi~Gh  214 (397)
T d1y4ia1         136 GKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTF-MSPYCQQPLQLGADIVVHSVTKYINGH  214 (397)
T ss_dssp             TSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT-TCTTTCCGGGGTCSEEEEETTTTTTCS
T ss_pred             CCHHHHHHhcCCCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcc-cCcccCcchhcCCCEEEEehhhhcCCC
Confidence            456889999999999999999999999998     38999999999999987 222222222334589999999999 56


Q ss_pred             CcceEEEEEecCHHHHHHHH--HhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024997           97 AGSRFGWAVIKDEAVYQRMS--AYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRF  174 (259)
Q Consensus        97 ~G~R~G~i~~~~~~~~~~~~--~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  174 (259)
                      ..+=.|.+++. ++.+.+.+  ..+...+..+++...+.+.+.++         .+..++++..++...+.+.|++.+.+
T Consensus       215 sdvl~G~v~~~-~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~---------TL~lRm~~~~~nA~~lA~~L~~hp~V  284 (397)
T d1y4ia1         215 GDVIGGIIVGK-QEFIDQARFVGLKDITGGCMSPFNAWLTLRGVK---------TLGIRMERHCENALKIARFLEGHPSI  284 (397)
T ss_dssp             SCCCCEEEEEC-HHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHT---------THHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             cceeeeccCCC-HHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcC---------cHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            66767788888 57776543  44555677888888887777776         57778999999999999999999976


Q ss_pred             cccccccccccc----ceee-CCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCccc---------------------
Q 024997          175 SLQEIAPQYCTY----FKKI-RPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFR---------------------  228 (259)
Q Consensus       175 ~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~---------------------  228 (259)
                      .....|....+.    ++.. ...+|++ .+.++. +.+...+++++-.+.. .+.+++                     
T Consensus       285 ~~V~yPgl~s~p~h~~~~~~~~g~gg~~-sf~~~~-~~~~~~~f~~~L~l~~-~a~SlGg~eSLi~~p~~~th~~~~~e~  361 (397)
T d1y4ia1         285 TRVYYPGLSSHPQYELGQRQMSLPGGII-SFEIAG-GLEAGRRMINSVELCL-LAVSLGDTETLIQHPASMTHSPVAPEE  361 (397)
T ss_dssp             EEEECTTSTTCTTHHHHHHHCSSCCSEE-EEEETT-HHHHHHHHHHTCSSSE-ECSCCSCSSCEEECTTTTTTSSSCHHH
T ss_pred             CeEeCCCCCCCccccccccccCCCCeEE-EEEecC-CHHHHHHHHHcCCccc-eeeccCcccceeeCccccccccCCHHH
Confidence            544444321110    1111 2234444 455553 3455566666554421 121111                     


Q ss_pred             -----CCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          229 -----AEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       229 -----~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                           ..++.+|||++-  |+.+++++-|.+.|++
T Consensus       362 r~~~Gi~~~liRlsvGl--Ed~~DLi~Dl~~AL~~  394 (397)
T d1y4ia1         362 RLKAGITDGLIRLSVGL--EDPEDIINDLEHAIRK  394 (397)
T ss_dssp             HHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred             HHHcCCCcCEEEEEecc--CCHHHHHHHHHHHHHH
Confidence                 135789999987  4444555555555543

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=3.6e-15  Score=125.78  Aligned_cols=223  Identities=11%  Similarity=0.139  Sum_probs=148.4

Q ss_pred             ccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhc----CCCcEEEeeccccCCCCCCCCCCCCCeEEEecccc
Q 024997           22 EGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLK----GPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISK   92 (259)
Q Consensus        22 ~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~----~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK   92 (259)
                      ..+.+++++.+++++++|++.+|.||+..+.     .++|+    ++|+++|+|+.+ ..+...-+-..+-+|++.|.+|
T Consensus       125 ~~~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~-atP~~~~Pl~~GADiVvhS~TK  203 (393)
T d1n8pa_         125 NDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTF-LSPYISNPLNFGADIVVHSATK  203 (393)
T ss_dssp             SSHHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTT-THHHHCCGGGGTCSEEEEETTT
T ss_pred             ecchHHHHHHhhhhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCc-cCcccCCchhhCCCEEEEcccc
Confidence            4456789999999999999999999999998     25555    889999999988 1111111112345899999999


Q ss_pred             cc-CCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhc
Q 024997           93 LT-GHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLS  171 (259)
Q Consensus        93 ~~-g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  171 (259)
                      .+ |...+-.|.++..++++.+.++......+..+++...+.+.+.++         .+..+.++..++...+.+.|+..
T Consensus       204 yi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~---------Tl~lR~~~~~~nA~~lA~~L~~~  274 (393)
T d1n8pa_         204 YINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLK---------TLHLRVRQAALSANKIAEFLAAD  274 (393)
T ss_dssp             TTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---------THHHHHHHHHHHHHHHHHHHTSC
T ss_pred             ccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCc---------chhhHHHHHHHHHHHHHHHHHhc
Confidence            99 567788888887767888899988888888899987777766665         67778999999999999999764


Q ss_pred             -CCCcccccccccccc----ce-ee-CCCCCeeEEEecCCCchHHHHHHHHHcCee---eecCCcc--------------
Q 024997          172 -NRFSLQEIAPQYCTY----FK-KI-RPPSPAYAWVKCEREEDKDCYGILKAAKII---GREGKKF--------------  227 (259)
Q Consensus       172 -~~~~~~~~~~~~~~~----~~-~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~---~~~g~~f--------------  227 (259)
                       +.+.....|......    ++ .. ...+|..+.+.++. +.+.+.++++.-.+.   ..-|...              
T Consensus       275 ~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~-~~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~  353 (393)
T d1n8pa_         275 KENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKG-GAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGI  353 (393)
T ss_dssp             TTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESS-CHHHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSS
T ss_pred             cCcEEEEecccccccccchhhhhccccCCCCceEEEEEeC-CHHHHHHHHHhCCcceecccCCCcCceEeCchhhccccC
Confidence             444333333211110    11 11 11235556667654 345555666554442   1112110              


Q ss_pred             --------cCCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          228 --------RAEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       228 --------~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                              +.+++.+|||++-  |+.+++++-|.+.|+
T Consensus       354 ~~~~r~~~gi~~~liRlSvGl--E~~~DLi~Dl~~AL~  389 (393)
T d1n8pa_         354 PKEAREASGVFDDLVRISVGI--EDTDDLLEDIKQALK  389 (393)
T ss_dssp             CTTTTTTTSCCTTEEEEECCS--SCHHHHHHHHHHHHH
T ss_pred             CHHHHHhcCCCcCEEEEEecc--CCHHHHHHHHHHHHH
Confidence                    1124689999987  455555555555554

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.62  E-value=1e-14  Score=124.64  Aligned_cols=220  Identities=17%  Similarity=0.131  Sum_probs=149.9

Q ss_pred             ccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccccCCCCCCCC-CCCCCeEEEeccccccC
Q 024997           22 EGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYFWPHFAPIP-APADEELMIFTISKLTG   95 (259)
Q Consensus        22 ~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~~~~~~~~~-~~~~~~i~~~S~SK~~g   95 (259)
                      ..+.+.|++.+++++++++++..+|-||.+++     ++|+++|+++++|.++..+ ..++. ...+.++++.|..|.+|
T Consensus       150 ~~~~~~l~~~~~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g-~~~id~~~~~~D~~~~s~hK~~g  228 (408)
T d1t3ia_         150 SFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAP-HYPLDVQLIDCDWLVASGHKMCA  228 (408)
T ss_dssp             SBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTT-TSCCCHHHHTCSEEEEEGGGTTS
T ss_pred             cccHHHhhhccCCCceEEEEecccccccccCcHHHHhhhhhccCceeeeccceecc-cccccccccCCceEEeccccccC
Confidence            45678888889999999999999999999983     7899999999999987311 11221 23456899999999988


Q ss_pred             CCcceEEEEEecCHHHHHHHHHhhh--------------------hhcCC-CCHHHHHHHHHHHHHHHhcCCcchHHHHH
Q 024997           96 HAGSRFGWAVIKDEAVYQRMSAYIS--------------------LNTMG-VSRECQLRAFKLLKVVLEDGGNNIFEFGY  154 (259)
Q Consensus        96 ~~G~R~G~i~~~~~~~~~~~~~~~~--------------------~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  154 (259)
                      .+|  +|+++.. +++...+.....                    ....| .+.....++..+++...+    --+++..
T Consensus       229 p~G--~g~l~v~-~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~----~g~~~i~  301 (408)
T d1t3ia_         229 PTG--IGFLYGK-EEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTD----LGMENIH  301 (408)
T ss_dssp             CTT--CEEEEEC-HHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHH----HCHHHHH
T ss_pred             CCC--ccccccc-hhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHH----cCHHHHH
Confidence            777  7999998 587765432110                    01122 333444444455543211    1234556


Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccC-----
Q 024997          155 NTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRA-----  229 (259)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~-----  229 (259)
                      ++.....+++.+.++..+...+....+        .....+..+.+.++..+.+.+...|+++||.++.|..+..     
T Consensus       302 ~~~~~l~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~iv~f~~~~~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~  373 (408)
T d1t3ia_         302 NYEVELTHYLWQGLGQIPQLRLYGPNP--------KHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRL  373 (408)
T ss_dssp             HHHHHHHHHHHHHHHTCTTEEEESCCG--------GGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHH
T ss_pred             HHHHHHHhHHhhhhccCccccccCCCc--------cccCcceEEEEEeCCCCHHHHHHHHhhCCcEEecCcccccHHHHh
Confidence            666777777778887776533221111        0122233445566666677777888899999999887642     


Q ss_pred             --CCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          230 --EARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       230 --~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                        .++.+|+|++.  +.++++.+++.|+++++
T Consensus       374 ~~~~g~vRiS~~~ynt~~did~li~~L~~~~~  405 (408)
T d1t3ia_         374 FDASGSARASLYFYNTKEEIDLFLQSLQATIR  405 (408)
T ss_dssp             TTCCCCEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             hcCCccEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence              35789999976  89999999999999875

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=3.6e-14  Score=119.62  Aligned_cols=220  Identities=11%  Similarity=0.096  Sum_probs=145.9

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhc--CCCcEEEeeccccCCCCCCCCCCCCCeEEEeccccccC
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLK--GPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTG   95 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~--~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g   95 (259)
                      .|.+++++.+++++++|++.+|+||+..+.     .++|+  ++|+++|+|+.+ ......-+-..+-+|++.|.||.++
T Consensus       131 ~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~-atP~~~~Pl~~GaDivvhS~TKy~~  209 (391)
T d1cl1a_         131 LIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTW-AAGVLFKALDFGIDVSIQAATKYLV  209 (391)
T ss_dssp             TCGGGGGGTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTT-TTTTSSCGGGGTCSEEEEETTTTTT
T ss_pred             ccccccccccccccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccc-cchhhhcccccccceEEeecchhcc
Confidence            467888999999999999999999999997     25664  469999999988 2222111113345899999999994


Q ss_pred             -CCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024997           96 -HAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRF  174 (259)
Q Consensus        96 -~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  174 (259)
                       ...+=.|.++.. +++.+.+..........+++...+.+.+.++         .+..++++..++...+.+.|++.+.+
T Consensus       210 GhsdvlgG~vv~~-~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~---------TL~lR~~~~~~nA~~vA~~L~~hp~V  279 (391)
T d1cl1a_         210 GHSDAMIGTAVCN-ARCWEQLRENAYLMGQMVDADTAYITSRGLR---------TLGVRLRQHHESSLKVAEWLAEHPQV  279 (391)
T ss_dssp             CSSSCCCEEEEEC-TTTHHHHHHHHHHTTCCCCHHHHHHHHHHHT---------THHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             ccccccccceecc-ccccccchhhhhcccccCCchhhhhhhccch---------hHHHHHHHHHHHHHHHHHHHHhcccc
Confidence             555667888877 5888888888777788888887777766665         67778999999999999999999876


Q ss_pred             cccccccccccc----cee-eCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCccc--------------------
Q 024997          175 SLQEIAPQYCTY----FKK-IRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFR--------------------  228 (259)
Q Consensus       175 ~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~--------------------  228 (259)
                      .....|......    ++. ....+|++ .+.+... +.+.+.+.+++-.+. ..+.++|                    
T Consensus       280 ~~V~yPgl~s~p~~~~~~~~~~g~gg~~-sf~l~~~~~~e~~~~f~d~L~l~-~~a~SlG~~~SLi~~~~~~~~~~~~~~  357 (391)
T d1cl1a_         280 ARVNHPALPGSKGHEFWKRDFTGSSGLF-SFVLKKKLNNEELANYLDNFSLF-SMAYSWGGYESLILANQPEHIAAIRPQ  357 (391)
T ss_dssp             EEEECTTSTTSTTHHHHHHHCSCCCSEE-EEEESSCCCHHHHHHHHTTCSSC-BCCSCCCSSSCEEEEECHHHHHHTSTT
T ss_pred             cccccccccchhhHHHHhhccCCCCcce-eeeecCCCCHHHHHHHHHcCCcc-eEeeCCCCCccceeCCcccccccCCch
Confidence            544444311110    111 12233433 3344432 445566666544432 1122222                    


Q ss_pred             ----CCCCeEEEEeecChhhHHHHHHHHHHHhh
Q 024997          229 ----AEARFVRLSLLKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       229 ----~~~~~~Ris~~~~~~~~~~~~~~l~~~l~  257 (259)
                          .+++.+|||++-  |+.+++++-|.+.|+
T Consensus       358 ~~~gi~~~liRlSVGl--Ed~eDLi~Dl~~AL~  388 (391)
T d1cl1a_         358 GEIDFSGTLIRLHIGL--EDVDDLIADLDAGFA  388 (391)
T ss_dssp             CCCCCCSCEEEEECCS--SCHHHHHHHHHHHHH
T ss_pred             HhcCCCcCEEEEEecc--CCHHHHHHHHHHHHH
Confidence                135679999987  344444444444443

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=2.6e-14  Score=120.62  Aligned_cols=219  Identities=12%  Similarity=0.107  Sum_probs=131.8

Q ss_pred             cccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhh--cCCCcEEEeeccccCCC-CCCCCCCCCCeEEEecccc
Q 024997           21 FEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVL--KGPYAKSIYDHAYFWPH-FAPIPAPADEELMIFTISK   92 (259)
Q Consensus        21 ~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la--~~~~~~vi~De~y~~~~-~~~~~~~~~~~i~~~S~SK   92 (259)
                      ..+|+++++++++++++++++++++|+||...     .+++  +..++++++|.+++.+. ...+ ...+.+++++|++|
T Consensus       125 ~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~-~~~~~D~~~~s~~K  203 (376)
T d1eg5a_         125 GVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSL-EKLEVDYASFSAHK  203 (376)
T ss_dssp             SCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCC-TTTCCSEEEEEGGG
T ss_pred             CeECHHHHHHhcCCCceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeeccccccccc-cccCccceecccce
Confidence            46888999999999999999999999999976     2544  56799999999884222 2222 34567899999999


Q ss_pred             ccCCCcceEEEEEecCHHHHHHHHH---hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHH
Q 024997           93 LTGHAGSRFGWAVIKDEAVYQRMSA---YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIIS  169 (259)
Q Consensus        93 ~~g~~G~R~G~i~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  169 (259)
                      .+|.+|..+.|+--. ..+......   .........+..............     ................++.+.|.
T Consensus       204 ~~gp~G~~~l~~~~~-~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~  277 (376)
T d1eg5a_         204 FHGPKGVGITYIRKG-VPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIA-----VEELSEAAKHMEKLRSKLVSGLM  277 (376)
T ss_dssp             GTSCTTCEEEEECTT-SCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH-----HHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecCCCceeEEeccC-cccCCcccCCCCcccccCCcccchhhhhHHHHhhcc-----ccchhhhhhhhhhhhhhhccccc
Confidence            999999766665322 111000000   001111112233333333333321     11233344455556666666666


Q ss_pred             hcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCC------------------C
Q 024997          170 LSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAE------------------A  231 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~------------------~  231 (259)
                      ......+..           ............++....+.+...|+++||.+++|..+..+                  .
T Consensus       278 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~  346 (376)
T d1eg5a_         278 NLGAHIITP-----------LEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQ  346 (376)
T ss_dssp             TTTCEECSC-----------TTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHH
T ss_pred             ccccccccc-----------ccccccceeeeccCCCCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCC
Confidence            544211110           01111223344455556677788899999999998765421                  2


Q ss_pred             CeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          232 RFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       232 ~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                      +.+|+|++.  +.++++.+++.|+++++
T Consensus       347 ~~iRiS~~~ynt~edid~l~~~L~~iv~  374 (376)
T d1eg5a_         347 GAIRISLCKYNTEEEVDYFLKKIEEILS  374 (376)
T ss_dssp             HEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence            469999976  89999999999999875

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.55  E-value=2e-13  Score=115.07  Aligned_cols=184  Identities=10%  Similarity=0.044  Sum_probs=125.1

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH-----HH-hhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEecccccc-C
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KA-VLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLT-G   95 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~-la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~-g   95 (259)
                      -|.+++++.+++++++|++.+|.||+..+.     .+ +++++|+.+|+|+.+ ......-+-..+-+|++.|.||.+ |
T Consensus       132 ~d~~~~~~~i~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~-atP~~~~Pl~~GaDiVvhS~TKy~~G  210 (394)
T d1e5ea_         132 AIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTF-CSPMITNPVDFGVDVVVHSATKYING  210 (394)
T ss_dssp             TSTTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTT-TCTTTCCGGGGTCSEEEEETTTTTTC
T ss_pred             CCHHHHHHhhcccccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcc-cCcccCCchhcCCCEEEechhhhcCC
Confidence            456788899999999999999999999986     14 445688999999988 222211112334589999999999 5


Q ss_pred             CCcceEEEEEecCHHHHHHHHH--hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCC
Q 024997           96 HAGSRFGWAVIKDEAVYQRMSA--YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNR  173 (259)
Q Consensus        96 ~~G~R~G~i~~~~~~~~~~~~~--~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  173 (259)
                      ...+-.|.++++ .+.....+.  .+...+..+++...+.+.+.++         .+..++++..++...+.+.|++.+.
T Consensus       211 hsDv~~G~v~~~-~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~---------TL~lRm~r~~~nA~~lA~~L~~hp~  280 (394)
T d1e5ea_         211 HTDVVAGLICGK-ADLLQQIRMVGIKDITGSVISPHDAWLITRGLS---------TLNIRMKAESENAMKVAEYLKSHPA  280 (394)
T ss_dssp             SSCCCCEEEEEC-HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHT---------THHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             Ccccccccccch-hhHHHHHHHHHHHHhhCCCCChHHHHHHHhhch---------hHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            677777888888 577765543  3344567788887777766666         6777899999999999999999997


Q ss_pred             Cccccccccccc----cceee-CCCCCeeEEEecCCCchHHHHHHHHHcCe
Q 024997          174 FSLQEIAPQYCT----YFKKI-RPPSPAYAWVKCEREEDKDCYGILKAAKI  219 (259)
Q Consensus       174 ~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~gi  219 (259)
                      +.....|.....    .++.. ...|+++. +.+.. +.+...+++++-.+
T Consensus       281 V~~V~yPgl~s~p~~~~~~~~~~~~G~~~s-f~~~~-~~~~a~~f~~~l~l  329 (394)
T d1e5ea_         281 VEKVYYPGFEDHEGHDIAKKQMRMYGSMIT-FILKS-GFEGAKKLLDNLKL  329 (394)
T ss_dssp             EEEEECTTCSSSTTHHHHHHHCSSCCSEEE-EEETT-HHHHHHHHHHTCSS
T ss_pred             ccEEeCCCcccccchhhhhcccccCCCeee-eeccC-CHHHHHHHHHhCCc
Confidence            654444321111    01111 22344444 34433 34556666666554

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.53  E-value=7.1e-14  Score=115.50  Aligned_cols=184  Identities=8%  Similarity=0.040  Sum_probs=125.3

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhH-----HHh-hcCCCcEEEeeccccCCCCCCCCCCCCCeEEEecccccc-C
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAV-LKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLT-G   95 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~l-a~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~-g   95 (259)
                      -|.+.+++++++++++|++.+|.||+..+.     .++ ++++|+++|+|+.+- .....-+-..+-+|++.|.||.+ |
T Consensus        71 ~d~~~~~~~i~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~a-tp~~~~pl~~GaDiVv~S~TKy~~G  149 (331)
T d1pffa_          71 AVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFA-SPILTNPLDLGVDIVVHSATKYING  149 (331)
T ss_dssp             TSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTT-HHHHCCGGGGTCSEEEEETTTTTSS
T ss_pred             cchhhHhhhcccccceeeeecccccccccccchhhhhhhhcccCceEEeecccc-ccccccccccCCCEEEecchhhcCC
Confidence            456788899999999999999999999997     255 567899999999881 11000011223489999999999 4


Q ss_pred             CCcceEEEEEecCHHHHHHHHH--hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCC
Q 024997           96 HAGSRFGWAVIKDEAVYQRMSA--YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNR  173 (259)
Q Consensus        96 ~~G~R~G~i~~~~~~~~~~~~~--~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  173 (259)
                      ....-.|.++.. ++.....+.  .........++...+.+.+.++         .+..+.++..++...+.+.|++.+.
T Consensus       150 h~d~~~G~v~~~-~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~---------Tl~~Rm~~~~~nA~~lA~~L~~hp~  219 (331)
T d1pffa_         150 HTDVVAGLVCSR-ADIIAKVKSQGIKDITGAIISPHDAWLITRGTL---------TLDMRVKRAAENAQKVAEFLHEHKA  219 (331)
T ss_dssp             SSSCCCEEEEEC-HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCcccccccccc-ccchhhhhhhhhhhccCCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhhCCc
Confidence            566667888877 566555443  2344567788887777777776         6777899999999999999999998


Q ss_pred             Ccccccccccccc----ceeeCCCCCeeEEEecCCCchHHHHHHHHHcCe
Q 024997          174 FSLQEIAPQYCTY----FKKIRPPSPAYAWVKCEREEDKDCYGILKAAKI  219 (259)
Q Consensus       174 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi  219 (259)
                      +.....|+.....    ++.....+|..+.+.+..  .+...+++++-.+
T Consensus       220 V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~--~~~~~~f~d~l~l  267 (331)
T d1pffa_         220 VKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG--LEKAKKVLDNCHV  267 (331)
T ss_dssp             CCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS--HHHHHHHHHTCSS
T ss_pred             EEeeccccccCccHHHHHhhcccccCcccceeecc--HHHHHHHHHhCCc
Confidence            7655444311111    112222334445566653  4556666765543

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.50  E-value=2.5e-13  Score=115.14  Aligned_cols=218  Identities=11%  Similarity=0.035  Sum_probs=141.3

Q ss_pred             hhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEeccccccC-CCcc
Q 024997           26 NLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTG-HAGS   99 (259)
Q Consensus        26 ~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~   99 (259)
                      +..++.+++++++|++.+|.|||..+.     .++|+++|+.+|+|+.+..+....-+-..+-+|++.|.||.++ ...+
T Consensus       135 ~~~~~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~  214 (421)
T d2ctza1         135 EEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAV  214 (421)
T ss_dssp             HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCC
T ss_pred             chhccccCCCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEecccccccceeccccccCCcEEEEechhhccCCCCe
Confidence            344556788999999999999999998     4899999999999998831122111223456899999999994 5666


Q ss_pred             eEEEEEecCH------------------------------HHH-HHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcc
Q 024997          100 RFGWAVIKDE------------------------------AVY-QRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNN  148 (259)
Q Consensus       100 R~G~i~~~~~------------------------------~~~-~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  148 (259)
                      =.|.++..++                              .++ +......+..+.++++...+.+.+.++         
T Consensus       215 l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~---------  285 (421)
T d2ctza1         215 IAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGME---------  285 (421)
T ss_dssp             CCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHT---------
T ss_pred             EEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCc---------
Confidence            6677775421                              111 112223344678889988887777776         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc----ce-eeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeec
Q 024997          149 IFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTY----FK-KIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGRE  223 (259)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~  223 (259)
                      .+..++++..++...+.+.|++.+.+.-...|+...+.    ++ ......|..+.+.++. +.+.+.++++.-.+. ..
T Consensus       286 TL~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~l~~-~~~~a~~f~~~L~l~-~~  363 (421)
T d2ctza1         286 TLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKG-GYEAAKRFISRLKLI-SH  363 (421)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETT-HHHHHHHHHHTCSSS-EE
T ss_pred             chhhHHHHHHHHHHHHHhhhccCCCeeEEecCCcCCCccHHHHHHhcCCCCceEEEEEecC-CHHHHHHHHHcCCcC-ee
Confidence            67778999999999999999999977544444322111    11 1122234456666654 355566666655441 22


Q ss_pred             CCccc--------------------------CCCCeEEEEeecChhhHHHHHHHHHHHh
Q 024997          224 GKKFR--------------------------AEARFVRLSLLKSQDDFDLLLHRLDELI  256 (259)
Q Consensus       224 g~~f~--------------------------~~~~~~Ris~~~~~~~~~~~~~~l~~~l  256 (259)
                      +.++|                          ..++.+|||++-  |+.+++++-|.+.|
T Consensus       364 a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~~liRlSvGl--Ed~eDLi~DL~qAL  420 (421)
T d2ctza1         364 LANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL--EHVEDLKAELKEAL  420 (421)
T ss_dssp             CSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHT
T ss_pred             ccccccccceeeCcccccchhCCHHHHHhcCCCcCeEEEEecc--CCHHHHHHHHHHhc
Confidence            22221                          135789999987  44455566666554

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3e-12  Score=108.14  Aligned_cols=218  Identities=9%  Similarity=0.000  Sum_probs=137.5

Q ss_pred             ccChhhhcccC-CCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCC-CCCCCCCCCCeEEEecccccc
Q 024997           22 EGEANLWGNAS-SDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPH-FAPIPAPADEELMIFTISKLT   94 (259)
Q Consensus        22 ~~d~~~l~~~~-~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~-~~~~~~~~~~~i~~~S~SK~~   94 (259)
                      .+|.+.+++.+ .++++++++++.+|.||.+.     .++|+++|+++++|.++..+. ...+ +..+.++++.|..|.+
T Consensus       130 ~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~-~~~~~D~~~~s~~K~~  208 (388)
T d1h0ca_         130 HYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYM-DRQGIDILYSGSQKAL  208 (388)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCT-TTTTCSEEEEESSSTT
T ss_pred             ccchHHHHHHhccCCcceEEEeeeeeccccccCHHHHHHHhhcccccceeccccccccccccc-cccccceecccccccc
Confidence            45555665555 55888999999999999987     489999999999999873111 1122 3455678999999988


Q ss_pred             C-CCcceEEEEEecCHHHHHHHHHhhh----------------------hhcCC-CCHHHHHHHHHHHHHHHhcCCcchH
Q 024997           95 G-HAGSRFGWAVIKDEAVYQRMSAYIS----------------------LNTMG-VSRECQLRAFKLLKVVLEDGGNNIF  150 (259)
Q Consensus        95 g-~~G~R~G~i~~~~~~~~~~~~~~~~----------------------~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~  150 (259)
                      + .+|  +|+++.. ++.++.+.....                      ....+ ++...-.+...+++...+.    -+
T Consensus       209 ~gp~g--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~----g~  281 (388)
T d1h0ca_         209 NAPPG--TSLISFS-DKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQ----GL  281 (388)
T ss_dssp             CCCTT--CEEEEEC-HHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHH----CH
T ss_pred             cCCCc--eEEEeec-HHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHh----cc
Confidence            4 455  6777777 577766532110                      01112 3333333344444432111    13


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-Cc-hHHHHHHHHHcCeeeecCCccc
Q 024997          151 EFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-EE-DKDCYGILKAAKIIGREGKKFR  228 (259)
Q Consensus       151 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~ll~~~gi~~~~g~~f~  228 (259)
                      ....++.++....+.+.++..+...+.  .+        ........+.+.+++ .+ .++...+++++||.++.|....
T Consensus       282 ~~~~~~~~~l~~~l~~~~~~~g~~~~~--~~--------~~~rs~~i~~~~~p~~~~~~~~~~~L~~~~gI~v~~G~~~~  351 (388)
T d1h0ca_         282 ENSWRQHREAAAYLHGRLQALGLQLFV--KD--------PALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPS  351 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCBSS--CS--------GGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGG
T ss_pred             ccccccccchhHHHHHHHhhcCccccc--CC--------HHHcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEeCCchhh
Confidence            445666677777777777766531110  00        011222344555643 33 4566677778899999986544


Q ss_pred             CCCCeEEEE-eec--ChhhHHHHHHHHHHHhhh
Q 024997          229 AEARFVRLS-LLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       229 ~~~~~~Ris-~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      . .+.+||| ++.  +.++++.+++.|+++|++
T Consensus       352 ~-~~~iRis~~g~~~t~edid~li~aL~~~L~~  383 (388)
T d1h0ca_         352 T-GKVLRIGLLGCNATRENVDRVTEALRAALQH  383 (388)
T ss_dssp             T-TTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             c-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            3 4789999 654  789999999999999874

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.42  E-value=3e-13  Score=111.39  Aligned_cols=209  Identities=11%  Similarity=0.053  Sum_probs=125.6

Q ss_pred             ccChhhhcccCCC------Cce-EEEEcCCCCCChhhH--------HHhhcCCCcEEEeecccc----CCCCCCCC-CCC
Q 024997           22 EGEANLWGNASSD------THL-VEFVTAPNNPDGQMN--------KAVLKGPYAKSIYDHAYF----WPHFAPIP-APA   81 (259)
Q Consensus        22 ~~d~~~l~~~~~~------~~~-~i~i~~p~NPtG~~~--------~~la~~~~~~vi~De~y~----~~~~~~~~-~~~   81 (259)
                      ..|++.+++.+..      .+. +++.+.++|+.|.++        .++|+++|+++++|+++.    ........ ...
T Consensus       109 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~  188 (343)
T d1m6sa_         109 AMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAG  188 (343)
T ss_dssp             EECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHH
T ss_pred             ccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhcc
Confidence            5566666666632      233 445556678888765        277899999999999982    11111100 011


Q ss_pred             CCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 024997           82 DEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRW  161 (259)
Q Consensus        82 ~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  161 (259)
                      .....+  ++|..+..|.+.|+++.. .+.+............+.+.....++.......   .....    .+...++.
T Consensus       189 ~~~~~~--~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~~----~~~~~~~~  258 (343)
T d1m6sa_         189 YADSVM--FCLSKGLCAPVGSVVVGD-RDFIERARKARKMLGGGMRQAGVLAAAGIIALT---KMVDR----LKEDHENA  258 (343)
T ss_dssp             TCSEEE--EESSSTTCCSSCEEEEEC-HHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHH---HSSTT----HHHHHHHH
T ss_pred             cccccc--cccccccccccccccccc-HHHHhhhHhhCcccccccchhHHHHHhhhhhhh---hhHHH----HHHHHHHH
Confidence            112223  333333456667888888 688777776665444444444443333333221   12222    34455666


Q ss_pred             HHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHcCeeeecCCcccCCCCeEEEEee
Q 024997          162 ENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL  239 (259)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~  239 (259)
                      ..+...+..+..             .....+..+.+++++++..  +...+.+.|.++||.++|.     +.+++|++++
T Consensus       259 ~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~a~~l~~~L~~~Gi~v~~~-----~~~~iRi~~~  320 (343)
T d1m6sa_         259 RFLALKLKEIGY-------------SVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAV-----SDTEIRLVTH  320 (343)
T ss_dssp             HHHHHHHHHHTC-------------BCCGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEE-----ETTEEEEECC
T ss_pred             HHhhhHHHHhcc-------------CccCCCCCceEEEEEeCCCcccHHHHHHHHHHCCCEEecC-----CCCEEEEECC
Confidence            666666665543             1122445567888888754  3445556666789999872     3578999986


Q ss_pred             c--ChhhHHHHHHHHHHHhhh
Q 024997          240 K--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       240 ~--~~~~~~~~~~~l~~~l~~  258 (259)
                      .  ++++++++++.|++++++
T Consensus       321 ~~~t~edid~~v~~l~~v~~~  341 (343)
T d1m6sa_         321 KDVSRNDIEEALNIFEKLFRK  341 (343)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
Confidence            4  899999999999999875

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.41  E-value=5e-13  Score=114.86  Aligned_cols=216  Identities=10%  Similarity=0.007  Sum_probs=132.6

Q ss_pred             cccChhhhcccCC-----CCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc--C---CCCCCCCCCCCCeE
Q 024997           21 FEGEANLWGNASS-----DTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF--W---PHFAPIPAPADEEL   85 (259)
Q Consensus        21 ~~~d~~~l~~~~~-----~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~--~---~~~~~~~~~~~~~i   85 (259)
                      +.+|+++|++.+.     ..+.++++++|++++|.+.     .++|+++|+++++|++|-  .   +.....+.....++
T Consensus       192 ~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~  271 (434)
T d2z67a1         192 VYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDA  271 (434)
T ss_dssp             EECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSE
T ss_pred             cCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcce
Confidence            4689999999883     3677889999999999985     489999999999999981  0   00000012234578


Q ss_pred             EEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 024997           86 MIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLS  165 (259)
Q Consensus        86 ~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (259)
                      ++.|++|.++. +...|++...++++++.+...........+.....+....+..       ..+.+..++..++.+++.
T Consensus       272 ~~~s~hK~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~-------~g~~~~~~~~~~~a~~l~  343 (434)
T d2z67a1         272 VVSSSDKNLLT-PIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGS-------KNYLELVKNQKNSKKLLD  343 (434)
T ss_dssp             EEEEHHHHHCC-CSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCcccccc-CCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHH-------hcchhHHHHHHHHHHHHH
Confidence            89999998863 2335667766678888777655433333333333333333331       234455666667777777


Q ss_pred             HHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeec----CCccc------CCCCeEE
Q 024997          166 KIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGRE----GKKFR------AEARFVR  235 (259)
Q Consensus       166 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~----g~~f~------~~~~~~R  235 (259)
                      +.|+++....-          ......+......+.+.. +...+...|.+.||....    +...+      ...+++|
T Consensus       344 ~~L~~l~~~~g----------~~ll~~~~~~~~~~~~~~-~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~  412 (434)
T d2z67a1         344 ELLNDLSKKTG----------GKFLDVESPIASCISVNS-DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIV  412 (434)
T ss_dssp             HHHHHHHHHSS----------CCBCCCCCSSEEEEECSS-CHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEE
T ss_pred             HHHHHhhhhcC----------ceecCCCCCceeeeecCC-CHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEE
Confidence            77766532100          112222333333333333 344555566678985432    21111      1357899


Q ss_pred             EEeec--ChhhHHHHHHHHHHH
Q 024997          236 LSLLK--SQDDFDLLLHRLDEL  255 (259)
Q Consensus       236 is~~~--~~~~~~~~~~~l~~~  255 (259)
                      ++.+.  ++++++.++++|+++
T Consensus       413 ~~~s~~~T~edID~~i~~L~kI  434 (434)
T d2z67a1         413 MNAAIGVRTEDIVNSVSKLEKI  434 (434)
T ss_dssp             EECCTTCCHHHHHHHHHHHHTC
T ss_pred             EecCCCCCHHHHHHHHHHHhcC
Confidence            99865  899999999999874

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=7.6e-12  Score=107.62  Aligned_cols=238  Identities=11%  Similarity=0.012  Sum_probs=138.9

Q ss_pred             cccchhhhhhccCcc---------cccccChhhhcccC----CCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEe
Q 024997            4 YPLYQEQTDYFESVD---------YKFEGEANLWGNAS----SDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIY   65 (259)
Q Consensus         4 y~~~~~~~~~~g~~~---------~~~~~d~~~l~~~~----~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~   65 (259)
                      ++.....++..|...         ..+.+|+++|++.+    .+++.++++++|+|++|.+.     .++|+++|+++++
T Consensus       150 H~s~~~a~~~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~v  229 (445)
T d3bc8a1         150 QKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVV  229 (445)
T ss_dssp             CHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEE
T ss_pred             cHHHHHHHHHcCCeeEEEEeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEE
Confidence            344455666667653         23578999999887    34688999999999999986     4999999999999


Q ss_pred             eccccCCC-----CCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q 024997           66 DHAYFWPH-----FAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLK  139 (259)
Q Consensus        66 De~y~~~~-----~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~  139 (259)
                      |++|....     ..... ...+..++..|.+|.++.+ .-.|+++..++++.+.+.........+.+...+.+....+.
T Consensus       230 D~a~~~~~~~~~~~~~~~~~~~~vd~~~~s~hK~~~~p-~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  308 (445)
T d3bc8a1         230 NNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLG  308 (445)
T ss_dssp             ECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH
T ss_pred             EccchhhhhhccccchhccCcCCcceEEecCccccccC-CCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHh
Confidence            99982100     00000 1234468899999987633 23577777767777776654443333333344444433333


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC------chHHHHHH
Q 024997          140 VVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE------EDKDCYGI  213 (259)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l  213 (259)
                      .       .-..+..+...++.+.+.+.|+++....-..+         ...+......++.+...      +...+...
T Consensus       309 ~-------~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~---------l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~  372 (445)
T d3bc8a1         309 C-------SGYRKLLKERKEMFVYLSTQLKKLAEAHNERL---------LQTPHNPISLAMTLKTIDGHHDKAVTQLGSM  372 (445)
T ss_dssp             H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCB---------CCCTTCSSEEEEECTTTSSSSSCHHHHHHHH
T ss_pred             h-------hcchhhHHHHHHHHHHHHHHHHHHHhhcCcee---------ecCCCCCcceEEEeeeccccCCCCHHHHHHH
Confidence            1       22344445555556666666655431000000         01233334444443322      23344445


Q ss_pred             HHHcCeeeec----CC----------cccC-----CCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          214 LKAAKIIGRE----GK----------KFRA-----EARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       214 l~~~gi~~~~----g~----------~f~~-----~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      |.+.||....    +.          .|+.     ...++|++.+.  ++++++.++++|++++++
T Consensus       373 L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~  438 (445)
T d3bc8a1         373 LFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNI  438 (445)
T ss_dssp             HHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCcceeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHH
Confidence            6667774221    11          1111     24568998765  889999999999998764

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.30  E-value=1.2e-11  Score=105.06  Aligned_cols=206  Identities=13%  Similarity=0.092  Sum_probs=127.8

Q ss_pred             hhhcccCCC-CceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeEEEe
Q 024997           26 NLWGNASSD-THLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEELMIF   88 (259)
Q Consensus        26 ~~l~~~~~~-~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i~~~   88 (259)
                      +.++..+.+ +..+ |+..| +...|.+.         .++|+++|+++|+||++  |+.......    +..+ +  +-
T Consensus       176 ~~l~~~~~~~~iAa-vi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~P-D--iv  251 (404)
T d1z7da1         176 EALEEELKDPNVCA-FIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKP-D--VI  251 (404)
T ss_dssp             HHHHHHHTSTTEEE-EEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCC-S--EE
T ss_pred             HHHHHHhcCCCEEE-EEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCC-C--EE
Confidence            445555544 5566 55566 33344433         38999999999999999  422111111    2111 2  44


Q ss_pred             ccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 024997           89 TISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKII  168 (259)
Q Consensus        89 S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (259)
                      +++|.++.-+.-+|.+++. +++.+.+.......+++.+++..+++.+.|+...+   ++..+...+.-....+.+.+.+
T Consensus       252 t~gK~l~gG~~p~~~v~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~---~~~~~~~~~~~~~~~~~l~~~~  327 (404)
T d1z7da1         252 LLGKALSGGHYPISAVLAN-DDIMLVIKPGEHGSTYGGNPLAASICVEALNVLIN---EKLCENAEKLGGPFLENLKREL  327 (404)
T ss_dssp             EECGGGGTTSSCCEEEEEC-HHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEcccccCCCCCcccccch-HHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhc---chhhhhhccchhHHHHHHHHHH
Confidence            9999997333789999999 79988887766667788899999999888886422   2333333333333444444444


Q ss_pred             HhcCCCccccccccccccceeeCCCCCeeEEEecCCC--chHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhh
Q 024997          169 SLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE--EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDD  244 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~  244 (259)
                      ++.+.             +..+...|. ...+.+...  ....+...+.++||.+.+     .+.+.+|++..  .++++
T Consensus       328 ~~~~~-------------v~~vrg~Gl-~~~i~~~~~~~~~~~~~~~l~~~Gl~~~~-----~~~~~ir~~Ppl~it~~~  388 (404)
T d1z7da1         328 KDSKI-------------VRDVRGKGL-LCAIEFKNELVNVLDICLKLKENGLITRD-----VHDKTIRLTPPLCITKEQ  388 (404)
T ss_dssp             TTCTT-------------EEEEEEETT-EEEEEECTTTCCHHHHHHHHHHTTEECCE-----ETTTEEEECCCTTCCHHH
T ss_pred             hcCCC-------------eEEEEeeCc-EEEEEEcCCcccHHHHHHHHHhCCeEEec-----CCCCEEEEECCcCCCHHH
Confidence            44331             222333333 344555432  233344445578999876     23467899853  49999


Q ss_pred             HHHHHHHHHHHhhh
Q 024997          245 FDLLLHRLDELISK  258 (259)
Q Consensus       245 ~~~~~~~l~~~l~~  258 (259)
                      +++++++|.+.+++
T Consensus       389 id~~~~~l~~alk~  402 (404)
T d1z7da1         389 LDECTEIIVKTVKF  402 (404)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998864

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.3e-11  Score=104.91  Aligned_cols=206  Identities=12%  Similarity=0.075  Sum_probs=133.0

Q ss_pred             cChhhhcccCCC-CceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCCCCeE
Q 024997           23 GEANLWGNASSD-THLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APADEEL   85 (259)
Q Consensus        23 ~d~~~l~~~~~~-~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~~~~i   85 (259)
                      .|.+++++.+.+ +..+ ++..| ..-.|...         .++|+++|+++|+||++  |+.......    +..+ + 
T Consensus       175 ~d~~~l~~~l~~~~iAa-viiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~P-D-  251 (404)
T d2byla1         175 NDLPALERALQDPNVAA-FMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRP-D-  251 (404)
T ss_dssp             TCHHHHHHHHTSTTEEE-EEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCC-S-
T ss_pred             cCHHHHHHhcCCCCeEE-EEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCC-C-
Confidence            456678877754 5566 55566 33344332         39999999999999998  422211111    1111 2 


Q ss_pred             EEeccccccCCCc-ceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 024997           86 MIFTISKLTGHAG-SRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENL  164 (259)
Q Consensus        86 ~~~S~SK~~g~~G-~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (259)
                       +-+++|.++ .| +.+|.+++. +++.+.+.......+++.+++.-+++.+.|+.+.+   ++    ..+..++.-..+
T Consensus       252 -i~~~gK~l~-gG~~p~~av~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~---~~----l~~~~~~~g~~l  321 (404)
T d2byla1         252 -IVLLGKALS-GGLYPVSAVLCD-DDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEE---EN----LAENADKLGIIL  321 (404)
T ss_dssp             -EEEECGGGG-TTSSCCEEEEEC-HHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH---TT----HHHHHHHHHHHH
T ss_pred             -EEEECchhh-CCCccceeeeec-hhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHh---cC----chhhhhHhhHHH
Confidence             449999998 55 899999999 79988887766667888899999999998886522   12    344555666667


Q ss_pred             HHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---chHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--
Q 024997          165 SKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--  239 (259)
Q Consensus       165 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--  239 (259)
                      .+.|+++..           +++..+...| +..-+.+...   ....+...+.++||.+.+     ...+.+|++..  
T Consensus       322 ~~~l~~l~~-----------~~i~~vRg~G-l~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~-----~~~~~i~l~PpL~  384 (404)
T d2byla1         322 RNELMKLPS-----------DVVTAVRGKG-LLNAIVIKETKDWDAWKVCLRLRDNGLLAKP-----THGDIIRFAPPLV  384 (404)
T ss_dssp             HHHHHTSCT-----------TTEEEEEEET-TEEEEEECCCSSCCHHHHHHHHHHTTEECEE-----EETTEEEECCCTT
T ss_pred             HHHHHhhcc-----------ccceeeeecc-cEEEEEEecCCchhHHHHHHHHHhCCeEEec-----CCCCEEEEECCcC
Confidence            777765431           1122233333 3333444332   222333444478999886     22468899853  


Q ss_pred             cChhhHHHHHHHHHHHhhh
Q 024997          240 KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       240 ~~~~~~~~~~~~l~~~l~~  258 (259)
                      .+++++++++++|.+.|..
T Consensus       385 it~~~id~~~~~l~~al~~  403 (404)
T d2byla1         385 IKEDELRESIEIINKTILS  403 (404)
T ss_dssp             CCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHc
Confidence            4899999999999998863

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=2.5e-11  Score=102.51  Aligned_cols=204  Identities=12%  Similarity=0.138  Sum_probs=140.1

Q ss_pred             cChhhhcccCCCCceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----C-CCCCeE
Q 024997           23 GEANLWGNASSDTHLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----A-PADEEL   85 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~-~~~~~i   85 (259)
                      .|.+.|++.+.++..+ |+..| ..-.|...         .++|+++|+++|.||++  |+.......    + .+|   
T Consensus       165 ~d~~~l~~~~~~~iAa-vi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PD---  240 (387)
T d1vefa1         165 NDVEALKRAVDEETAA-VILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD---  240 (387)
T ss_dssp             TCHHHHHHHCCTTEEE-EEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS---
T ss_pred             CCHHHHHHhcCCCeEE-EEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCc---
Confidence            3677888888888888 44566 23334432         28999999999999999  532222221    1 233   


Q ss_pred             EEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 024997           86 MIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLS  165 (259)
Q Consensus        86 ~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (259)
                       +-+++|.++ .|+-++.++.. +++.+.+.......+++.+++..+++.+.++...+.   +    ..+++++.-+++.
T Consensus       241 -i~~~gK~l~-gG~~~~~~~~~-~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~---~----~~~~v~~~g~~l~  310 (387)
T d1vefa1         241 -ILTLAKALG-GGVPLGVAVMR-EEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERT---R----LWERAAELGPWFM  310 (387)
T ss_dssp             -EEEECGGGG-TTSSCEEEEEE-HHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHH---T----THHHHHHHHHHHH
T ss_pred             -eeeecccCC-CCccccccccc-eeeeeccccCCccccCCCCcchhhhcccchhhcccc---c----ccchHhhhhHHHH
Confidence             667899997 78889999988 688887766666678888999999999888865222   2    3455666667777


Q ss_pred             HHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChh
Q 024997          166 KIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQD  243 (259)
Q Consensus       166 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~  243 (259)
                      +.|+++..           ..+..+... |+..-+++.......+.+++.++|+.+.+     .+++.+|++..  .+++
T Consensus       311 ~~L~~l~~-----------~~v~~vrg~-Gl~~~ie~~~~~~~~~~~~~~~~g~l~~~-----~g~~~ir~~Ppl~it~~  373 (387)
T d1vefa1         311 EKLRAIPS-----------PKIREVRGM-GLMVGLELKEKAAPYIARLEKEHRVLALQ-----AGPTVIRFLPPLVIEKE  373 (387)
T ss_dssp             HHHHTSCC-----------TTEEEEEEE-TTEEEEEESSCSHHHHHHHHHHHCEECEE-----SSTTEEEECCCTTCCHH
T ss_pred             HHHHhcCC-----------CceEEEeec-ceEEEEEEeCCchHHHHHHHHHCCCeEEe-----cCCCEEEEECCccCCHH
Confidence            77776532           112222222 34445666655556666776678887765     33578898864  4999


Q ss_pred             hHHHHHHHHHHHhh
Q 024997          244 DFDLLLHRLDELIS  257 (259)
Q Consensus       244 ~~~~~~~~l~~~l~  257 (259)
                      ++++++++++++|+
T Consensus       374 ~ld~~~~~i~~aLS  387 (387)
T d1vefa1         374 DLERVVEAVRAVLA  387 (387)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999999875

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.29  E-value=2.2e-10  Score=95.30  Aligned_cols=208  Identities=14%  Similarity=0.041  Sum_probs=133.4

Q ss_pred             cccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc-CCCCCCCCCCCCCeEEEecccccc-CCCcceE
Q 024997           29 GNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF-WPHFAPIPAPADEELMIFTISKLT-GHAGSRF  101 (259)
Q Consensus        29 ~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~-~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~  101 (259)
                      .....++++++.++.-+|-||..+     .++|+++|+++++|.++- +.....+ +..+.++++.|..|.+ |.+|  +
T Consensus       121 ~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~-~~~~~D~~~~s~~K~l~gp~G--~  197 (361)
T d1m32a_         121 ILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDI-AALHIDYLISSANKCIQGVPG--F  197 (361)
T ss_dssp             HHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCT-TTTTCSEEEEESSSTTCCCSS--E
T ss_pred             HHHhccCccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcccccc-cccccceEEeeecccccCCCC--c
Confidence            333467899999999999999998     388999999999999882 2111122 4556799999999987 5678  8


Q ss_pred             EEEEecCHHHHHHHHH------------------hhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 024997          102 GWAVIKDEAVYQRMSA------------------YISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWEN  163 (259)
Q Consensus       102 G~i~~~~~~~~~~~~~------------------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (259)
                      |+++.. ++..+....                  ........++.....+....+....+   +.......++.+...+.
T Consensus       198 g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~  273 (361)
T d1m32a_         198 AFVIAR-EQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAK---EGGVAARHQRYQQNQRS  273 (361)
T ss_dssp             EEEEEE-HHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH---HTHHHHHHHHHHHHHHH
T ss_pred             eEEEec-hhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHH---hcchhhhHHHHHHHHHH
Confidence            888888 565543321                  11112234555555555555554322   12334445566666677


Q ss_pred             HHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC---CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEee-
Q 024997          164 LSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER---EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL-  239 (259)
Q Consensus       164 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~-  239 (259)
                      +.+.++..+.. ..  .+        ....+...+.+.+++   .+...+...|.++||.+.+|....  ++.+|||.. 
T Consensus       274 l~~~~~~~g~~-~~--~~--------~~~rs~~v~~~~~p~~~~~~~~~~~~~l~~~gi~i~~G~~~~--~~~~Ris~~g  340 (361)
T d1m32a_         274 LVAGMRALGFN-TL--LD--------DELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQ--SDCFRIGNIG  340 (361)
T ss_dssp             HHHHHHHTTCC-BS--SC--------GGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSS--SCEEEEECCS
T ss_pred             HHHHHhhcCCc-cc--CC--------hhhcCCcEEEEECCCCCCCCHHHHHHHHHHCCcEEECCCcCC--CCEEEEeCCC
Confidence            77777765521 10  00        011222333444443   245566677778999998875433  578999953 


Q ss_pred             c-ChhhHHHHHHHHHHHh
Q 024997          240 K-SQDDFDLLLHRLDELI  256 (259)
Q Consensus       240 ~-~~~~~~~~~~~l~~~l  256 (259)
                      . ++++++.+++.|+++|
T Consensus       341 ~~~~~di~~lv~al~~~L  358 (361)
T d1m32a_         341 EVYAADITALLTAIRTAM  358 (361)
T ss_dssp             SCCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHc
Confidence            3 8999999999999876

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=6.6e-11  Score=99.54  Aligned_cols=217  Identities=8%  Similarity=0.032  Sum_probs=131.2

Q ss_pred             ccChhhhcccC-CCCceEEEEcCCCCCChhhHH-----Hh--hcCCCcEEEeeccc-cCCCCCCCCCCCCCeEEEecccc
Q 024997           22 EGEANLWGNAS-SDTHLVEFVTAPNNPDGQMNK-----AV--LKGPYAKSIYDHAY-FWPHFAPIPAPADEELMIFTISK   92 (259)
Q Consensus        22 ~~d~~~l~~~~-~~~~~~i~i~~p~NPtG~~~~-----~l--a~~~~~~vi~De~y-~~~~~~~~~~~~~~~i~~~S~SK   92 (259)
                      ..+.+.+++.+ .+++++++++..+|.||...+     +.  ++.+++++++|.+. ++.....+ +..+.++++.|..|
T Consensus       121 ~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~-~~~giD~~~~s~~K  199 (382)
T d2bkwa1         121 SVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEF-DEWGVDFALTASQK  199 (382)
T ss_dssp             CCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCT-TTTTCSEEEEESSS
T ss_pred             ccchhHHHHHhhhccchheeeeeccccccccccchhhhhhccccccceeeeeecccccccccccc-cccCeeEEeecccc
Confidence            34556666665 567889899999999999872     44  44667999999977 22111122 45567999999999


Q ss_pred             cc-CCCcceEEEEEecCHHHHHHHHHhhhh-------------------------hcCC-CCHHHHHHHHHHHHHHHhcC
Q 024997           93 LT-GHAGSRFGWAVIKDEAVYQRMSAYISL-------------------------NTMG-VSRECQLRAFKLLKVVLEDG  145 (259)
Q Consensus        93 ~~-g~~G~R~G~i~~~~~~~~~~~~~~~~~-------------------------~~~~-~~~~~q~~~~~~l~~~~~~~  145 (259)
                      .+ |.+|  +|+++.. +++++.+......                         .+.+ ++...-++...+++...+. 
T Consensus       200 ~l~gP~G--~g~l~vs-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~-  275 (382)
T d2bkwa1         200 AIGAPAG--LSISLCS-SRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEE-  275 (382)
T ss_dssp             TTCCCSC--EEEEEEC-HHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHH-
T ss_pred             cCcCCCc--hhhhhcc-HHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHh-
Confidence            88 7899  8999999 6877765332110                         1122 3333344455555543211 


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCC--CCeeEEEecCCCchHHHHHHHHHcCeeeec
Q 024997          146 GNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPP--SPAYAWVKCEREEDKDCYGILKAAKIIGRE  223 (259)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~  223 (259)
                         -.+...++.++..+.+...+....++....          ..+..  +...+.+..+  +...+.++|+++||.+..
T Consensus       276 ---g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~----------~~~~~~~s~~v~~~~~~--~~~~~~~~L~~~gi~i~~  340 (382)
T d2bkwa1         276 ---GLHKRWDLHREMSDWFKDSLVNGLQLTSVS----------RYPSNMSAHGLTAVYVA--DPPDVIAFLKSHGVVIAG  340 (382)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHTTTCCEESS----------CSSSTTBCSSCEEEECS--CHHHHHHHHHHTTEECBC
T ss_pred             ---hhhhhHHHHHHHHHHHHHHhhhcccccccc----------cCchhccCCcEEEEcCC--CHHHHHHHHHHCCeEEEC
Confidence               234445556666777777776543321111          11111  1122334444  355677788899999998


Q ss_pred             CCcccCCCCeEEEE-eec--Chhh---HHHHHHHHHHHhhh
Q 024997          224 GKKFRAEARFVRLS-LLK--SQDD---FDLLLHRLDELISK  258 (259)
Q Consensus       224 g~~f~~~~~~~Ris-~~~--~~~~---~~~~~~~l~~~l~~  258 (259)
                      |.+-..+.+.+||| ++.  +.++   +..+++.+++.|++
T Consensus       341 G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~~  381 (382)
T d2bkwa1         341 GIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR  381 (382)
T ss_dssp             CCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred             CCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHCc
Confidence            86544445789999 654  3343   66666666666654

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.26  E-value=3.4e-11  Score=101.96  Aligned_cols=218  Identities=13%  Similarity=0.062  Sum_probs=126.7

Q ss_pred             ccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCC-CCCCCeEEEeccccccC
Q 024997           22 EGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIP-APADEELMIFTISKLTG   95 (259)
Q Consensus        22 ~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~-~~~~~~i~~~S~SK~~g   95 (259)
                      ..+++.+++++++++++++++..+|.||.++     .++|+++|+.+++|.++.... .++. +..+.++++.|..|.++
T Consensus       151 ~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~-~~~~~~~~~~d~~~~s~~K~~~  229 (404)
T d1qz9a_         151 VDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGA-VPVDLHQAGADYAIGCTYKYLN  229 (404)
T ss_dssp             ESSGGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTT-SCCCHHHHTCSEEEECSSSTTC
T ss_pred             cccchhHHHhcCCCceEEEEecccccccceecHHHHhccccccccceeEEeeccccc-cccccccccceEEEEechhhcc
Confidence            4667788899999999999999999999998     388999999999999873111 1222 33456788999999874


Q ss_pred             CCcceEEEEEecCHHHHHHHHHh-----------------------hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHH
Q 024997           96 HAGSRFGWAVIKDEAVYQRMSAY-----------------------ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEF  152 (259)
Q Consensus        96 ~~G~R~G~i~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  152 (259)
                      .+.--.|+++.. .+..+.+...                       ........+..........+.... ......+.+
T Consensus       230 ~~~g~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~  307 (404)
T d1qz9a_         230 GGPGSQAFVWVS-PQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFA-QTDMASLRR  307 (404)
T ss_dssp             CCTTCCCEEEEC-TTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHT-TSCHHHHHH
T ss_pred             cCCceEEEEEec-hhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHH-HhhHHHHHH
Confidence            332234677766 3554433210                       011112233333333333333221 012222333


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCC
Q 024997          153 GYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEAR  232 (259)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~  232 (259)
                      ....+......+...+....++.+.  .+.      .....++ .+.+..++  ...+.+.|.++||.+..    . .++
T Consensus       308 ~~~~~~~~~~~l~~~~~~~~~~~i~--~p~------~~~~r~~-~vsf~~~~--~~~v~~~L~~~gi~~~~----r-~~~  371 (404)
T d1qz9a_         308 KSLALTDLFIELVEQRCAAHELTLV--TPR------EHAKRGS-HVSFEHPE--GYAVIQALIDRGVIGDY----R-EPR  371 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCEEC--SCS------SGGGBCS-EEEEECTT--HHHHHHHHHTTTEECEE----E-TTT
T ss_pred             HHHHhHHHHHHHHHhhccCCCEEEE--CCC------Cccceee-EEEEecCC--HHHHHHHHHHCCCEEee----c-CCC
Confidence            3333333333344444443432221  110      0011123 34455553  45566667788996532    1 247


Q ss_pred             eEEEEeec---ChhhHHHHHHHHHHHhhh
Q 024997          233 FVRLSLLK---SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       233 ~~Ris~~~---~~~~~~~~~~~l~~~l~~  258 (259)
                      .+|+|+++   +.++++.+++.|++++++
T Consensus       372 ~lRiS~~h~ynt~~did~~~~~L~~vl~~  400 (404)
T d1qz9a_         372 IMRFGFTPLYTTFTEVWDAVQILGEILDR  400 (404)
T ss_dssp             EEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence            89999973   889999999999999986

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.21  E-value=3.8e-10  Score=97.07  Aligned_cols=215  Identities=11%  Similarity=0.037  Sum_probs=132.8

Q ss_pred             cccChhhhcccCC----CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeecccc----------CCCCCC-
Q 024997           21 FEGEANLWGNASS----DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAYF----------WPHFAP-   76 (259)
Q Consensus        21 ~~~d~~~l~~~~~----~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y~----------~~~~~~-   76 (259)
                      +.+|++.|++.++    ..+.++++.+|+|+.|...         .++|+++|+.+++|++.+          ...+.. 
T Consensus       156 ~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~  235 (456)
T d1c7ga_         156 GDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENV  235 (456)
T ss_dssp             TCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTS
T ss_pred             ccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCC
Confidence            4678888998883    2456889999999988432         389999999999999862          111111 


Q ss_pred             -CCC-----CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhh-----cCCCCHHHHHHHHHHHHHHHhcC
Q 024997           77 -IPA-----PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN-----TMGVSRECQLRAFKLLKVVLEDG  145 (259)
Q Consensus        77 -~~~-----~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~q~~~~~~l~~~~~~~  145 (259)
                       +.+     ...-.++..|++|.++.++  -|+++.+++++.++++......     ..+.+.....+....+...   .
T Consensus       236 ~i~~i~~~~~~~ad~~s~s~~K~~~~~~--GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~---~  310 (456)
T d1c7ga_         236 SIKDIVHEMFSYADGCTMSGKKDCLVNI--GGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREA---M  310 (456)
T ss_dssp             CHHHHHHHHHTTCSEEEEETTTTTCCSS--CEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHH---T
T ss_pred             ChhhhccccccccccEEEeccccccccc--eeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHh---c
Confidence             110     0123577789999997553  3888888778888777654221     1223333333333333321   1


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC----C------chHHHHHHHH
Q 024997          146 GNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER----E------EDKDCYGILK  215 (259)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~ll~  215 (259)
                      .++    ..++..++.+++.+.|++.+              +....+.++...+++...    .      ..+.+..++.
T Consensus       311 ~~~----~l~~r~~~~~~L~e~L~~~g--------------~~vv~p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~  372 (456)
T d1c7ga_         311 QYE----YIEHRVKQVRYLGDKLREAG--------------VPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYM  372 (456)
T ss_dssp             CHH----HHHHHHHHHHHHHHHHHHTT--------------CCBCSSCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHH
T ss_pred             CHH----HHHHHHHHHHHHHHHHHhcc--------------CCcccCCCCcceeEechhhccCCCcccccHHHHHHHHHH
Confidence            122    23344555677778888765              334456666666665321    1      2356777777


Q ss_pred             HcCeeeecCCccc------------CCCCeEEEEeec---ChhhHHHHHHHHHHHhhh
Q 024997          216 AAKIIGREGKKFR------------AEARFVRLSLLK---SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       216 ~~gi~~~~g~~f~------------~~~~~~Ris~~~---~~~~~~~~~~~l~~~l~~  258 (259)
                      +.||...+...+.            +....+|+++..   +.++++..++.|++++++
T Consensus       373 ~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~  430 (456)
T d1c7ga_         373 ETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH  430 (456)
T ss_dssp             HHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTT
T ss_pred             HhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhh
Confidence            8899755421111            113469999863   889999999999998763

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.20  E-value=3.3e-10  Score=95.22  Aligned_cols=217  Identities=10%  Similarity=-0.026  Sum_probs=128.6

Q ss_pred             cChhhhcccC-CCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc-cCCCCCCCCCCCCCeEEEecccccc-
Q 024997           23 GEANLWGNAS-SDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY-FWPHFAPIPAPADEELMIFTISKLT-   94 (259)
Q Consensus        23 ~d~~~l~~~~-~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y-~~~~~~~~~~~~~~~i~~~S~SK~~-   94 (259)
                      .+.+..++.. ..+++++++++-+|.||...     .++|+++|+.+++|.+. ++.....+ +..+.++++.|-.|.+ 
T Consensus       129 ~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~-~~~~~d~~~~s~~K~~~  207 (388)
T d2ch1a1         129 FSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYM-DKWEIDAVYTGAQKVLG  207 (388)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCT-TTTTCCEEECCCC-CCC
T ss_pred             cchhhhhhhhccCCcceeeeeecccccccccchhhhcchhccccceeeeeeeecccccccch-hccCceEEEEccccccC
Confidence            3444444444 45788989999999999997     48999999999999987 22111222 4556788899999977 


Q ss_pred             CCCcceEEEEEecCHHHHHHHHHhhh----------------------hhcCCCCH-HHHHHHHHHHHHHHhcCCcchHH
Q 024997           95 GHAGSRFGWAVIKDEAVYQRMSAYIS----------------------LNTMGVSR-ECQLRAFKLLKVVLEDGGNNIFE  151 (259)
Q Consensus        95 g~~G~R~G~i~~~~~~~~~~~~~~~~----------------------~~~~~~~~-~~q~~~~~~l~~~~~~~~~~~~~  151 (259)
                      |.+|  +|+++.. ++.++.+.....                      ..+...+. ..-..+...++....+    -..
T Consensus       208 gp~G--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~----~~~  280 (388)
T d2ch1a1         208 APPG--ITPISIS-PKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEE----GLE  280 (388)
T ss_dssp             CCSS--CEEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHH----CHH
T ss_pred             CCCe--EEEEecc-HHHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHh----hhH
Confidence            5677  7888887 577765543110                      01122222 2222333333322111    122


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-Cc-hHHHHHHHHHcCeeeecCCcccC
Q 024997          152 FGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-EE-DKDCYGILKAAKIIGREGKKFRA  229 (259)
Q Consensus       152 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~ll~~~gi~~~~g~~f~~  229 (259)
                      ...++.++........+........          .......+...+.+.+++ .+ .++...+++++||.+.+|.+...
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~rs~~v~~~~~p~g~~~~~l~~~l~~~~gI~v~~G~~~~~  350 (388)
T d2ch1a1         281 NQIKRRIECAQILYEGLGKMGLDIF----------VKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTF  350 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCBS----------SCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGT
T ss_pred             HHHHHHHHHHHHHHhhhhhcccccc----------cCCHHHhCCeEEEEECCCCCCHHHHHHHHhhcCCEEEeCCCcccc
Confidence            2333344444444444444331100          000112234455667754 34 45556666778999999876443


Q ss_pred             CCCeEEEE-eec--ChhhHHHHHHHHHHHhhh
Q 024997          230 EARFVRLS-LLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       230 ~~~~~Ris-~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                       .+.+||| ++.  +.++++.+++.|+++|+.
T Consensus       351 -~~~~RIs~~g~~~t~edI~~ll~alke~L~~  381 (388)
T d2ch1a1         351 -GKAWRVGIMGECSTVQKIQFYLYGFKESLKA  381 (388)
T ss_dssp             -TTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             -CCEEEEcCCcCCCCHHHHHHHHHHHHHHHHh
Confidence             3789999 665  679999999999999874

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=1.2e-10  Score=99.45  Aligned_cols=179  Identities=12%  Similarity=0.029  Sum_probs=113.2

Q ss_pred             HhhcCCCcEEEeeccc--cCCCCCCCC----C-CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCC
Q 024997           54 AVLKGPYAKSIYDHAY--FWPHFAPIP----A-PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGV  126 (259)
Q Consensus        54 ~la~~~~~~vi~De~y--~~~~~~~~~----~-~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~  126 (259)
                      ++|+++|+++|.||++  |+.......    + .+|    +-+++|.+| .|+.+|.+++. +++.+.+.......+++.
T Consensus       226 ~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PD----i~~~gK~l~-gG~P~~av~~~-~~i~~~~~~~~~~~T~~g  299 (425)
T d1sffa_         226 ALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPD----LTTFAKSIA-GGFPLAGVTGR-AEVMDAVAPGGLGGTYAG  299 (425)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCS----EEEECGGGG-TSSCCEEEEEE-HHHHTTSCTTSBCCSSSS
T ss_pred             HHHHHcCceEEeccccccCCCcchhhHHHhcCCCcc----ceecccccC-CCcceEEEEEc-HHHHHhhCCCCCCCCCCc
Confidence            8999999999999998  321111111    1 223    667999997 68999999999 799888877666678899


Q ss_pred             CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC--
Q 024997          127 SRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER--  204 (259)
Q Consensus       127 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  204 (259)
                      +++..+++.+.|+...+.   +..+...+.-+..++.+.+.++..+.             +..+...|.+ ..+.+..  
T Consensus       300 npl~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~l~~~~~~~~~-------------v~~vrg~Gl~-~~i~f~~~~  362 (425)
T d1sffa_         300 NPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLAIAEKHPE-------------IGDVRGLGAM-IAIELFEDG  362 (425)
T ss_dssp             CHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHTCTT-------------EEEEEEETTE-EEEEEBGGG
T ss_pred             CHHHHHHHHHHHHHHHHh---hhhhhhhhhhhhhhhhhhhhHhhCCc-------------eEEEEccccE-EEEEEeccC
Confidence            999999999999875322   33222222223333333333443331             2222333333 2333311  


Q ss_pred             ----Cc---hHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          205 ----EE---DKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       205 ----~~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                          .+   ...+...+.++||.+.++.   ...+.+|++..  .++++++++++++.+.+++
T Consensus       363 ~~~~~~~~~~~~~~~~l~~~Gvl~~~~g---~~~n~i~~~PpL~it~~eid~~l~~l~~al~e  422 (425)
T d1sffa_         363 DHNKPDAKLTAEIVARARDKGLILLSCG---PYYNVLRILVPLTIEDAQIRQGLEIISQCFDE  422 (425)
T ss_dssp             CTTSBCHHHHHHHHHHHHHTTEECEEES---TTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccHHHHHHHHHHHHHCCCEEeccC---CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                11   1223334446899988732   22467899864  4999999999999998874

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.17  E-value=5.5e-10  Score=93.38  Aligned_cols=205  Identities=10%  Similarity=0.002  Sum_probs=129.5

Q ss_pred             CCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc-CCCCCCCCCCCCCeEEEecccccc-CCCcceEEEEE
Q 024997           33 SDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF-WPHFAPIPAPADEELMIFTISKLT-GHAGSRFGWAV  105 (259)
Q Consensus        33 ~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~-~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~i~  105 (259)
                      ++.++++.+++-+|.||.+.     .++|+++|+.+++|.++. +.....+ +..+.++++.|..|.+ |.+|  +|++.
T Consensus       141 ~~~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~-~~~~~d~~~~s~~K~~~gp~g--~~~~~  217 (377)
T d1vjoa_         141 THRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFL-DAWGVDLAYSCSQKGLGCSPG--ASPFT  217 (377)
T ss_dssp             HHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCT-TTTTCSEEECCSSSTTCSCSS--CEEEE
T ss_pred             cCcceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhcc-cccccceeeecccccccCCCE--EEEec
Confidence            55788889999999999998     489999999999999882 2112222 4556688899999976 4455  67777


Q ss_pred             ecCHHHHHHHHHhh-------------------hhhcCCCCHHHH-HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 024997          106 IKDEAVYQRMSAYI-------------------SLNTMGVSRECQ-LRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLS  165 (259)
Q Consensus       106 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (259)
                      .. ++.++......                   ......++.+.. .....+....    ...-.....++.+++...+.
T Consensus       218 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~g~~~~~~~~~~~~~~l~  292 (377)
T d1vjoa_         218 MS-SRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLI----AQEGLANCWQRHQKNVEYLW  292 (377)
T ss_dssp             EC-HHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHH----HHHCHHHHHHHHHHHHHHHH
T ss_pred             ch-hhHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhh----hhcCchHHHHHHHHHhhhhh
Confidence            77 57776544321                   111222223222 2222333221    11234556777777888888


Q ss_pred             HHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC-Cc-hHHHHHHHHHcCeeeecCCcccCCCCeEEEE-eec--
Q 024997          166 KIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-EE-DKDCYGILKAAKIIGREGKKFRAEARFVRLS-LLK--  240 (259)
Q Consensus       166 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris-~~~--  240 (259)
                      +.+...+. ... .+         ........+.+.+++ .+ .++...+++++||.+..|..... ++.+|+| ++.  
T Consensus       293 ~~l~~~~~-~~~-~~---------~~~rs~~v~~~~~p~~~~~~~l~~~L~~~~gI~v~~G~~~~~-~~~~Ris~~g~~~  360 (377)
T d1vjoa_         293 ERLEDIGL-SLH-VE---------KEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELA-GKVWRVGLMGFNS  360 (377)
T ss_dssp             HHHHHTTC-CBS-SC---------GGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGT-TTEEEEECCGGGC
T ss_pred             hhhhccCc-eee-cC---------hHhcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEecCccccc-CCEEEEecCcCCC
Confidence            88876542 110 00         011233344555643 33 45556777888999998875443 4789999 554  


Q ss_pred             ChhhHHHHHHHHHHHhh
Q 024997          241 SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       241 ~~~~~~~~~~~l~~~l~  257 (259)
                      +.++++.+++.|+++|+
T Consensus       361 t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         361 RKESVDQLIPALEQVLR  377 (377)
T ss_dssp             SHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHhC
Confidence            68899999999999874

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.16  E-value=2.6e-09  Score=87.09  Aligned_cols=206  Identities=12%  Similarity=0.011  Sum_probs=114.9

Q ss_pred             ccChhhhcccCCC-------CceEEEEcCCCCCChhhH--------HHhhcCCCcEEEeecccc-------CCCCCCCCC
Q 024997           22 EGEANLWGNASSD-------THLVEFVTAPNNPDGQMN--------KAVLKGPYAKSIYDHAYF-------WPHFAPIPA   79 (259)
Q Consensus        22 ~~d~~~l~~~~~~-------~~~~i~i~~p~NPtG~~~--------~~la~~~~~~vi~De~y~-------~~~~~~~~~   79 (259)
                      ..+++.++..+.+       ....++.+++.|+.|...        .++|+++|+++++|+++.       .........
T Consensus       115 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  194 (345)
T d1v72a1         115 KLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTW  194 (345)
T ss_dssp             CCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTG
T ss_pred             cccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhc
Confidence            4666677766632       123456666777777654        268999999999999981       111111111


Q ss_pred             CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 024997           80 PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKK  159 (259)
Q Consensus        80 ~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  159 (259)
                      .........+..|..+ .+.  |........................+.....++ .....    ..+....+......+
T Consensus       195 ~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~-~~~~~----~~~~~~~~~~~~~~~  266 (345)
T d1v72a1         195 KAGVDALSFGATKNGV-LAA--EAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSA-QIDAY----LTDDLWLRNARKANA  266 (345)
T ss_dssp             GGTCCEEEECCGGGTC-SSC--EEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHH-HHHHH----TSTTHHHHHHHHHHH
T ss_pred             cccccccccCcccccc-ccc--cccccchhhhhhhccccccccccccchhhHHhh-hhHHH----HHHhhhhhhccchhh
Confidence            2233344444444433 222  222322223333222222222222222222222 22222    133444555666667


Q ss_pred             HHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEee
Q 024997          160 RWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL  239 (259)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~  239 (259)
                      +...+...+..+++             +....|..+++++++++   .+....++ +.|+.+.++.   .+++.+||+++
T Consensus       267 ~~~~~~~~l~~~~g-------------~~~~~p~~~niv~~~~~---~~~~~~L~-~~gi~v~~~~---~~~~~lR~~~~  326 (345)
T d1v72a1         267 AAQRLAQGLEGLGG-------------VEVLGGTEANILFCRLD---SAMIDALL-KAGFGFYHDR---WGPNVVRFVTS  326 (345)
T ss_dssp             HHHHHHHHHTTCTT-------------EEEESCCCSSEEEEEEC---HHHHHHHH-HTTCBCBCSS---SSTTEEEEECC
T ss_pred             HHHHHHHHHHhcCC-------------cEeccCCCccEEEEEcC---HHHHHHHH-HcCCCccccC---CCCCEEEEECC
Confidence            77777777776664             44456667778888874   44555555 6798875432   24689999997


Q ss_pred             c--ChhhHHHHHHHHHHH
Q 024997          240 K--SQDDFDLLLHRLDEL  255 (259)
Q Consensus       240 ~--~~~~~~~~~~~l~~~  255 (259)
                      .  ++++++.+++.|++.
T Consensus       327 ~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         327 FATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             TTCCHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            5  899999999999864

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.10  E-value=3e-10  Score=98.01  Aligned_cols=214  Identities=13%  Similarity=0.062  Sum_probs=121.3

Q ss_pred             cccChhhhcccCC---C-CceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeecccc--------CCCCCCCC-
Q 024997           21 FEGEANLWGNASS---D-THLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAYF--------WPHFAPIP-   78 (259)
Q Consensus        21 ~~~d~~~l~~~~~---~-~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y~--------~~~~~~~~-   78 (259)
                      +.+|.+.|+++++   + .+.+++++.++|..|...         .++|+++|+++|+|+++.        ........ 
T Consensus       164 ~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~  243 (465)
T d1ax4a_         164 GDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNA  243 (465)
T ss_dssp             TCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTC
T ss_pred             CccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhccccccccccccc
Confidence            4678889998883   3 344544445555544321         389999999999999982        00111110 


Q ss_pred             C--------CCCCeEEEeccccccCCCcceEEEEEecCH-HHHHHHHHhh----h-hhcCCCCHHHHHHHHHHHHHHHhc
Q 024997           79 A--------PADEELMIFTISKLTGHAGSRFGWAVIKDE-AVYQRMSAYI----S-LNTMGVSRECQLRAFKLLKVVLED  144 (259)
Q Consensus        79 ~--------~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~-~~~~~~~~~~----~-~~~~~~~~~~q~~~~~~l~~~~~~  144 (259)
                      .        ..-..++..|.+|..  .+.+.|+++.++. .+........    . ....+.......++...+..    
T Consensus       244 ~~~~i~~~~~~~~d~~s~s~~k~~--~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e----  317 (465)
T d1ax4a_         244 TIKEVIFDMYKYADALTMSAKKDP--LLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEE----  317 (465)
T ss_dssp             CHHHHHHHHGGGCSEEEEETTSTT--CCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHH----
T ss_pred             chhhhccccccccceeEeecccCc--ccccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHH----
Confidence            0        011245555666665  4666799988742 2233222211    1 11122233333333333332    


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC----------chHHHHHHH
Q 024997          145 GGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE----------EDKDCYGIL  214 (259)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ll  214 (259)
                         ....+..++..++.+++.+.|++++              ++...+.++.++..+....          .......++
T Consensus       318 ---~~~~~~~~~~~~~~~~l~~~L~~~g--------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  380 (465)
T d1ax4a_         318 ---GTEEEYLHYRIGQVKYLGDRLREAG--------------IPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALY  380 (465)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHHHHHHTT--------------CCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHH
T ss_pred             ---hhhHHHHHHHHHHHHHHHHHHHhhc--------------CccccCCCcceeeeehhhhcCCCccccchhHHHHHHHH
Confidence               1122334555666778888888765              4445666777776665432          234567777


Q ss_pred             HHcCeeeecCCc------------ccCCCCeEEEEeec---ChhhHHHHHHHHHHHhh
Q 024997          215 KAAKIIGREGKK------------FRAEARFVRLSLLK---SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       215 ~~~gi~~~~g~~------------f~~~~~~~Ris~~~---~~~~~~~~~~~l~~~l~  257 (259)
                      .+.||.......            .....+.+|+++..   ++++++.+++.|+++++
T Consensus       381 ~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~  438 (465)
T d1ax4a_         381 LESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKE  438 (465)
T ss_dssp             HHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHH
T ss_pred             HhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence            788987643221            11124579999732   88999999999998875

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.09  E-value=3.1e-10  Score=96.96  Aligned_cols=206  Identities=15%  Similarity=0.098  Sum_probs=120.4

Q ss_pred             cChhhhcccCC---CCceEEEEcCCC-CCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----C-CCC
Q 024997           23 GEANLWGNASS---DTHLVEFVTAPN-NPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----A-PAD   82 (259)
Q Consensus        23 ~d~~~l~~~~~---~~~~~i~i~~p~-NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~-~~~   82 (259)
                      .|.+.+++.+.   .+..+ ++..|- --.|.+.         .++|+++|+++|.||++  |.. .....    + .+|
T Consensus       184 ~~~~~le~~~~~~~~~iaa-vi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~-g~~~~~~~~gi~PD  261 (427)
T d2gsaa_         184 NDLEAVKALFAENPGEIAG-VILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRI-AYGGVQEKFGVTPD  261 (427)
T ss_dssp             TCHHHHHHHHTTSTTTEEE-EEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTT-BTTCHHHHTTCCCS
T ss_pred             chHHHHHHHHHhCCCCeEE-EEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeecccccccee-cccchHHhcCCCHH
Confidence            45677777774   24555 555662 2123322         38999999999999999  311 11110    1 222


Q ss_pred             CeEEEeccccccCCCcceEEEEEecCHHHHHHHHHh---hhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 024997           83 EELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAY---ISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKK  159 (259)
Q Consensus        83 ~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  159 (259)
                          +-+++|.+| .|+-+|.+++. +++.+.+...   ....+++.+++.-+++.+.|+...   .++.    .+.+++
T Consensus       262 ----i~~~gK~lg-gG~p~~a~~~~-~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~---~~~l----~~~~~~  328 (427)
T d2gsaa_         262 ----LTTLGKIIG-GGLPVGAYGGK-REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLR---QPGT----YEYLDQ  328 (427)
T ss_dssp             ----EEEECGGGG-TTSCCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHT---STTH----HHHHHH
T ss_pred             ----HHhhhhccC-CCcceeeeeeh-HHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhh---hhhH----HhhhhH
Confidence                567788887 78889999999 6998877642   233567889999999999988652   2233    344445


Q ss_pred             HHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecC----------CCch----HHHHHHHHHcCeeeecCC
Q 024997          160 RWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCE----------REED----KDCYGILKAAKIIGREGK  225 (259)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~----~~~~~ll~~~gi~~~~g~  225 (259)
                      +-+++.+.|+++..    ..+   .  ...+...++++.+.-..          ..+.    .+...++ ++||.+.|+.
T Consensus       329 ~g~~l~~~L~~l~~----~~~---~--~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll-~~Gv~l~p~~  398 (427)
T d2gsaa_         329 ITKRLSDGLLAIAQ----ETG---H--AACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGML-EQGIYLAPSQ  398 (427)
T ss_dssp             HHHHHHHHHHHHHH----HTT---C--CCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSST
T ss_pred             HHHHHHHHHHHHHh----hcC---C--CcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHH-HCCEEECCCC
Confidence            55555544443320    000   0  00112223332111111          0111    2233444 6899988743


Q ss_pred             cccCCCCeEEEEeecChhhHHHHHHHHHHHhhh
Q 024997          226 KFRAEARFVRLSLLKSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       226 ~f~~~~~~~Ris~~~~~~~~~~~~~~l~~~l~~  258 (259)
                      .     ..+-+++..++++++++++++++++++
T Consensus       399 ~-----~~~~~~l~~Te~dId~~l~al~~al~~  426 (427)
T d2gsaa_         399 F-----EAGFTSLAHTEEDIDATLAAARTVMSA  426 (427)
T ss_dssp             T-----SCEECCTTCCHHHHHHHHHHHHHHHTC
T ss_pred             C-----cceeCCCCCCHHHHHHHHHHHHHHHHh
Confidence            1     112356667999999999999999874

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.09  E-value=7.8e-09  Score=85.84  Aligned_cols=214  Identities=12%  Similarity=0.025  Sum_probs=146.8

Q ss_pred             ccccChhhhcccCC-CCceEEEEcCCCCCChhhH---HHhhcCCCcEEEeecccc-----CC-CCCCCCCCCCCeEEEec
Q 024997           20 KFEGEANLWGNASS-DTHLVEFVTAPNNPDGQMN---KAVLKGPYAKSIYDHAYF-----WP-HFAPIPAPADEELMIFT   89 (259)
Q Consensus        20 ~~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~---~~la~~~~~~vi~De~y~-----~~-~~~~~~~~~~~~i~~~S   89 (259)
                      ...+|.+++++.+. .++++|++..=.+|-=.-+   .++|++.|++++.|-+++     +. ...++   ..-.++.+|
T Consensus       147 ~~~ID~d~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~---~~aDvvt~t  223 (405)
T d1kl1a_         147 THVIDYDDVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPV---PYAHFVTTT  223 (405)
T ss_dssp             TCSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST---TTCSEEEEE
T ss_pred             cccccHHHHHHHHHhhCcceEEecccccccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChh---hhhhheecc
Confidence            34688899998884 5899966666556665555   488999999999999984     22 22233   224788999


Q ss_pred             cccccCCCcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHH-HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 024997           90 ISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFK-LLKVVLEDGGNNIFEFGYNTMKKRWENLSKII  168 (259)
Q Consensus        90 ~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (259)
                      +.|+|.  |=|-|.|.+. +++.+++.+..-+...+.+...+.++.+ .+.+.    ....+.+..+++.++.+.|.+.|
T Consensus       224 ThKtlr--GPrgg~I~~~-~~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea----~~~~fk~Ya~qvv~NAkaLa~~L  296 (405)
T d1kl1a_         224 THKTLR--GPRGGMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEA----LQDDFKAYAKRVVDNAKRLASAL  296 (405)
T ss_dssp             SSSTTC--CCSCEEEEEC-HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH----HSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccc--CCCCceEEec-chhHHHHHhhhCcccccCcchhHHHHHHHHHHHH----hChHHHHHHHHHHHHHHHHHHHH
Confidence            999983  5566999988 6999888887766666665555544322 22321    22345667888999999999999


Q ss_pred             HhcCCCccccccccccccceeeC-CCCCeeEEEecCCC--chHHHHHHHHHcCeeee----cCCcccC-CCCeEEEEe--
Q 024997          169 SLSNRFSLQEIAPQYCTYFKKIR-PPSPAYAWVKCERE--EDKDCYGILKAAKIIGR----EGKKFRA-EARFVRLSL--  238 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~----~g~~f~~-~~~~~Ris~--  238 (259)
                      .+.+              +.... ....-.+|+++...  +...+.+.|++.||.+.    |++.-.+ .+..+||+.  
T Consensus       297 ~~~G--------------~~vv~ggTd~H~vlvdl~~~~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a  362 (405)
T d1kl1a_         297 QNEG--------------FTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAA  362 (405)
T ss_dssp             HHTT--------------CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHH
T ss_pred             hcCC--------------ceeecCCCccceeeccccccCCcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHH
Confidence            9866              22222 11222567787543  57788889999999765    4332111 246899997  


Q ss_pred             ----ecChhhHHHHHHHHHHHhh
Q 024997          239 ----LKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       239 ----~~~~~~~~~~~~~l~~~l~  257 (259)
                          +..+++++++.+.|.++++
T Consensus       363 ~TtrG~~e~dm~~ia~~I~~~l~  385 (405)
T d1kl1a_         363 VTTRGFGLEEMDEIAAIIGLVLK  385 (405)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHh
Confidence                2277889988888888775

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=1.1e-08  Score=85.21  Aligned_cols=213  Identities=12%  Similarity=0.046  Sum_probs=143.3

Q ss_pred             ccChhhhcccC-CCCceEEEEcCCCCCChhhH---HHhhcCCCcEEEeecccc-----CC-CCCCCCCCCCCeEEEeccc
Q 024997           22 EGEANLWGNAS-SDTHLVEFVTAPNNPDGQMN---KAVLKGPYAKSIYDHAYF-----WP-HFAPIPAPADEELMIFTIS   91 (259)
Q Consensus        22 ~~d~~~l~~~~-~~~~~~i~i~~p~NPtG~~~---~~la~~~~~~vi~De~y~-----~~-~~~~~~~~~~~~i~~~S~S   91 (259)
                      .+|.+++++.+ ..++++|++..=.+|-=.-+   .++|.+.|+++++|.+++     +. ...+++   .-.++.+|+.
T Consensus       151 ~IDyd~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~---~aDvvt~tTh  227 (416)
T d1dfoa_         151 HIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVP---HAHVVTTTTH  227 (416)
T ss_dssp             SBCHHHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTT---TSSEEEEESS
T ss_pred             CccHHHHHHHHHHhccceEEecccccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCccc---ccceeeeehh
Confidence            47888888887 45899977665445544444   489999999999999994     11 222332   2379999999


Q ss_pred             cccCCCcceEEEEEec--CHHHHHHHHHhhhhhcCCCCHHHHHHH-HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 024997           92 KLTGHAGSRFGWAVIK--DEAVYQRMSAYISLNTMGVSRECQLRA-FKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKII  168 (259)
Q Consensus        92 K~~g~~G~R~G~i~~~--~~~~~~~~~~~~~~~~~~~~~~~q~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (259)
                      |+|.  |=|-|.|.+.  ++++.+++.+..-+...+.+...+.++ +..+.+.    ....+.+..+++.++.+.|.+.|
T Consensus       228 Ktlr--GPrggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea----~~~~fk~Y~~qvv~NA~~La~~L  301 (416)
T d1dfoa_         228 KTLA--GPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEA----MEPEFKTYQQQVAKNAKAMVEVF  301 (416)
T ss_dssp             STTC--CCSCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT----TSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccc--CCCceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHHHHH
Confidence            9983  5566999985  368888887766655556555544443 2233321    23345677889999999999999


Q ss_pred             HhcCCCccccccccccccceeeCC-CCCeeEEEecCCC--chHHHHHHHHHcCeeee----cCCcccC-CCCeEEEEee-
Q 024997          169 SLSNRFSLQEIAPQYCTYFKKIRP-PSPAYAWVKCERE--EDKDCYGILKAAKIIGR----EGKKFRA-EARFVRLSLL-  239 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~----~g~~f~~-~~~~~Ris~~-  239 (259)
                      .+.+              ++.... ...-.+++++...  +...+...|++.||.+.    |++.-.+ .+..+||+.. 
T Consensus       302 ~~~G--------------~~iv~ggTdnHlvlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a  367 (416)
T d1dfoa_         302 LERG--------------YKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPA  367 (416)
T ss_dssp             HHTT--------------CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHH
T ss_pred             HhCC--------------cccccCCCCCceeEEEecccCCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHH
Confidence            9876              332221 1222457887543  57889999999999764    4332111 2568999972 


Q ss_pred             -----cChhhHHHHHHHHHHHhh
Q 024997          240 -----KSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       240 -----~~~~~~~~~~~~l~~~l~  257 (259)
                           ..+++++++.+.|.++++
T Consensus       368 ~TtrG~~e~d~~~iA~~I~~~l~  390 (416)
T d1dfoa_         368 ITRRGFKEAEAKELAGWMCDVLD  390 (416)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHH
Confidence                 267889888888887765

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=1.2e-09  Score=93.21  Aligned_cols=181  Identities=10%  Similarity=-0.013  Sum_probs=119.0

Q ss_pred             HhhcCCCcEEEeeccc--cCCCCCCCC-CCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhh-----hhhcCC
Q 024997           54 AVLKGPYAKSIYDHAY--FWPHFAPIP-APADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI-----SLNTMG  125 (259)
Q Consensus        54 ~la~~~~~~vi~De~y--~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~-----~~~~~~  125 (259)
                      ++|+++|+++|.||++  |+....... ...+..--+-+++|.++.-++.+|.+++. +++.+.+....     ...+++
T Consensus       233 ~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~gK~l~gG~~p~~av~~~-~~i~~~~~~~~~~~~~~~~T~~  311 (429)
T d1s0aa_         233 KICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTT-REVAETISNGEAGCFMHGPTFM  311 (429)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEEC-HHHHHHHHTSTTSSCSCCCTTT
T ss_pred             HHHHHcCcceehhhccccccccccccccccceecccccccccccccccccccchhhH-HHHHhccCCCCCcceeecCCCC
Confidence            8999999999999999  422211111 11111112667899997445899999999 79998876532     245788


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC
Q 024997          126 VSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE  205 (259)
Q Consensus       126 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (259)
                      .+++.-+++.+.|+...   .++    ..+..++.-+++.+.|+++...          ..+..+...| ++.-+++...
T Consensus       312 gnp~~~aaa~a~L~~i~---~~~----~~~~~~~~g~~l~~~L~~l~~~----------~~v~~vrg~G-l~~~~e~~~~  373 (429)
T d1s0aa_         312 GNPLACAAANASLAILE---SGD----WQQQVADIEVQLREQLAPARDA----------EMVADVRVLG-AIGVVETTHP  373 (429)
T ss_dssp             TCHHHHHHHHHHHHHHH---TCH----HHHHHHHHHHHHHHHHGGGGGC----------TTEEEEEEET-TEEEEEESSC
T ss_pred             CCcccchhhhccccccc---ccc----ccchhhHHHHHHHHHHHHhccC----------CceEEEeecc-cEEEEEecCc
Confidence            89999999999988652   122    3556666666777777654320          1132233333 4444555443


Q ss_pred             -chHHHHHHHHHcCeeeecCCcccCCCCeEEEEe--ecChhhHHHHHHHHHHHhhhC
Q 024997          206 -EDKDCYGILKAAKIIGREGKKFRAEARFVRLSL--LKSQDDFDLLLHRLDELISKE  259 (259)
Q Consensus       206 -~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~--~~~~~~~~~~~~~l~~~l~~~  259 (259)
                       ....+...+.++|+.+.+.      .+.+|++.  ..+++++++++++|.+.++++
T Consensus       374 ~~~~~~~~~~~~~Gl~~~~~------g~~i~~~Ppl~it~~eid~~~~~l~~al~e~  424 (429)
T d1s0aa_         374 VNMAALQKFFVEQGVWIRPF------GKLIYLMPPYIILPQQLQRLTAAVNRAVQDE  424 (429)
T ss_dssp             BCHHHHHHHHHHTTEECCCB------TTEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred             ccHHHHHHHHHHCCcEEEec------CCEEEEeCCcCCCHHHHHHHHHHHHHHHHhh
Confidence             3455556666789998762      26899985  339999999999999998763

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.06  E-value=2.9e-09  Score=88.97  Aligned_cols=231  Identities=11%  Similarity=-0.009  Sum_probs=133.4

Q ss_pred             CcccchhhhhhccCcc-------cccccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc-
Q 024997            3 FYPLYQEQTDYFESVD-------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY-   69 (259)
Q Consensus         3 ~y~~~~~~~~~~g~~~-------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y-   69 (259)
                      +|+.....+...|..+       ..+.+|++.|++.+++++++|++++   ..|...     .++|+++|++||+|.++ 
T Consensus        80 ~~~~~~~ai~~~g~~pv~~d~~~~~~~~d~~~l~~~i~~~tkaIi~~h---~~G~~~~~~~i~~i~~~~~i~vIeD~a~a  156 (376)
T d1mdoa_          80 TWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVH---YAGAPADLDAIYALGERYGIPVIEDAAHA  156 (376)
T ss_dssp             SCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTC
T ss_pred             cccccccchhccccceeeecccccccCCCHHHHHHhcCCCCeEEEEeC---CCCCccchhHHHHHHHhcCceEEeccchh
Confidence            4555555566666655       2467889999999999999988765   344432     48999999999999988 


Q ss_pred             cCCCCCCC-CCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhh------------------------cC
Q 024997           70 FWPHFAPI-PAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN------------------------TM  124 (259)
Q Consensus        70 ~~~~~~~~-~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~------------------------~~  124 (259)
                      ++...... .+..+..++-...+|.++..+  -|.++.+++++.+.++......                        ..
T Consensus       157 ~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~--GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~  234 (376)
T d1mdoa_         157 TGTSYKGRHIGARGTAIFSFHAIKNITCAE--GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKY  234 (376)
T ss_dssp             TTCEETTEETTSSSEEEEECCTTSSSCSSS--CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBC
T ss_pred             ccCeeCCeecccccCccccCCCcCCCCCCC--CCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhccccc
Confidence            32111111 122232233233458875322  4888888888888776654221                        12


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEE-ecC
Q 024997          125 GVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWV-KCE  203 (259)
Q Consensus       125 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  203 (259)
                      ..+.+..+.+..-+.         .+++..++.+++++.+.+.|+++..+.......         .....++.++ .+.
T Consensus       235 ~~~~~~Aai~~~qL~---------~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~---------~~~~~~~~~~~~~~  296 (376)
T d1mdoa_         235 NLPDLNAAIALAQLQ---------KLDALNARRAAIAAQYHQAMADLPFQPLSLPSW---------EHIHAWHLFIIRVD  296 (376)
T ss_dssp             CCCHHHHHHHHHHHH---------THHHHHHHHHHHHHHHHHHHHTSSCEECCCCSS---------CEECCCSCEEEECC
T ss_pred             ccchhhhhhhhhhhh---------hhhHHHHHHhhhhhhhhhhcccccccccccccc---------cccccccccccccc
Confidence            233343333333333         345556677777888888888766432211110         0011121222 122


Q ss_pred             C----CchHHHHHHHHHcCeeeecCCc-----------ccC---------CCCeEEEEeec--ChhhHHHHHHHHHHHh
Q 024997          204 R----EEDKDCYGILKAAKIIGREGKK-----------FRA---------EARFVRLSLLK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       204 ~----~~~~~~~~ll~~~gi~~~~g~~-----------f~~---------~~~~~Ris~~~--~~~~~~~~~~~l~~~l  256 (259)
                      .    .+.+.+.+.|+++||.+++...           +..         ....+.|-+..  +.+++++.++.|++++
T Consensus       297 ~~~~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~  375 (376)
T d1mdoa_         297 EARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA  375 (376)
T ss_dssp             HHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            1    1235566777889998875321           000         02345654433  7899999999999875

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=2.6e-09  Score=91.65  Aligned_cols=232  Identities=14%  Similarity=0.044  Sum_probs=144.3

Q ss_pred             cchhhhhhccCcc-------cccccChhhhcccCCCCceEEEEcCCCCCChhhHH-----------HhhcCCCcEEEeec
Q 024997            6 LYQEQTDYFESVD-------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----------AVLKGPYAKSIYDH   67 (259)
Q Consensus         6 ~~~~~~~~~g~~~-------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----------~la~~~~~~vi~De   67 (259)
                      .+...++.+|...       ..+.+|+++|++.+++++.+|+.+.++|.||.+-+           +.|+++|+++.+|.
T Consensus       163 s~~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDA  242 (450)
T d1pmma_         163 CWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDA  242 (450)
T ss_dssp             HHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_pred             HHHHHHHHcCCCceEeeecCCCCcCcHHHHHHHhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeeh
Confidence            4556667776643       24789999999999999999999999999998751           45788999999999


Q ss_pred             ccc-------CCCCCCCCCCCCCeEEEeccccccC-CCcceEEEEEecCHHHHHHHHHh----hh----hhcCCCCH---
Q 024997           68 AYF-------WPHFAPIPAPADEELMIFTISKLTG-HAGSRFGWAVIKDEAVYQRMSAY----IS----LNTMGVSR---  128 (259)
Q Consensus        68 ~y~-------~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~R~G~i~~~~~~~~~~~~~~----~~----~~~~~~~~---  128 (259)
                      +|.       .+......+....+-+..|..|.++ ..|  +||+...+++........    ..    ..+...+.   
T Consensus       243 A~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~  320 (450)
T d1pmma_         243 ASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLG--CGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAG  320 (450)
T ss_dssp             TTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSH
T ss_pred             hhccceeeeechhhhhhhcccceeEeecChhhccCCCCC--eeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchH
Confidence            982       1111111234456778999999875 345  899998764432211110    00    01111111   


Q ss_pred             --HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCC-CCeeEEEecCC-
Q 024997          129 --ECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPP-SPAYAWVKCER-  204 (259)
Q Consensus       129 --~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-  204 (259)
                        ..+++....+.       ..-+.+..++..++.+++.+.|++++.+.+..          ...+. +...+.+++.. 
T Consensus       321 ~~~~~~~~l~~~G-------~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~----------~~~p~~~l~~V~Fr~~~~  383 (450)
T d1pmma_         321 QVIAQYYEFLRLG-------REGYTKVQNASYQVAAYLADEIAKLGPYEFIC----------TGRPDEGIPAVCFKLKDG  383 (450)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEE----------ECCTTTBSSEEEEEECTT
T ss_pred             HHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe----------CCCCCCceEEEEEecCCc
Confidence              22333333332       23467778888899999999999887643321          01111 12223444422 


Q ss_pred             ----CchHHHHHHHHHcCeeeecCCcccC---CCCeEEEEeec--ChhhHHHHHHHHHHHhh
Q 024997          205 ----EEDKDCYGILKAAKIIGREGKKFRA---EARFVRLSLLK--SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       205 ----~~~~~~~~ll~~~gi~~~~g~~f~~---~~~~~Ris~~~--~~~~~~~~~~~l~~~l~  257 (259)
                          .+...+...|+++|..+.. ..+.+   ....+|+.+..  +.+.++.+++.|++.++
T Consensus       384 ~~~~~~~~~l~~~L~~~Gw~v~~-~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~  444 (450)
T d1pmma_         384 EDPGYTLYDLSERLRLRGWQVPA-FTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLK  444 (450)
T ss_dssp             CCCSSCHHHHHHHHHTTTCBCCE-EECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHcCCeeec-cCcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence                2344566777788976632 22322   24579999965  78888888888887764

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=98.99  E-value=1.8e-08  Score=83.40  Aligned_cols=204  Identities=11%  Similarity=0.020  Sum_probs=124.4

Q ss_pred             CCCCceEEEEcCCCCCChhhH-----HHhhcCC--CcEEEeeccc-cCCCCCCCCCCCCCeEEEecccccc-CCCcceEE
Q 024997           32 SSDTHLVEFVTAPNNPDGQMN-----KAVLKGP--YAKSIYDHAY-FWPHFAPIPAPADEELMIFTISKLT-GHAGSRFG  102 (259)
Q Consensus        32 ~~~~~~~i~i~~p~NPtG~~~-----~~la~~~--~~~vi~De~y-~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G  102 (259)
                      ..++++.+++++..+.||.+.     .++|+++  +.++++|.+. ++.....+ +..+-++++.|.-|.+ |.+|  +|
T Consensus       117 ~~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~-d~~~iD~~~~~sqK~l~gppG--~~  193 (348)
T d1iuga_         117 AKEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVAL-EAMGVDAAASGSQKGLMCPPG--LG  193 (348)
T ss_dssp             CCSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCS-GGGTCSEEEEESSSTTCCCSC--EE
T ss_pred             cccCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhccccccccc-ccccCCEEEeccccceecCCc--ee
Confidence            356788889999999999987     3677654  5788999866 32111122 3445789999999988 8899  79


Q ss_pred             EEEecCHHHHHHHHH-------------hhhhhcCC-CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 024997          103 WAVIKDEAVYQRMSA-------------YISLNTMG-VSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKII  168 (259)
Q Consensus       103 ~i~~~~~~~~~~~~~-------------~~~~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (259)
                      +++.. ++.+++++.             .....+.. ++...-++..++++...     +...+..+..+.....+...+
T Consensus       194 ~v~~s-~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~-----~~~~~~~~~~~~~~~~~~~~~  267 (348)
T d1iuga_         194 FVALS-PRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVL-----PRLEEHLALKAWQNALLYGVG  267 (348)
T ss_dssp             EEEEC-HHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeec-hHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHhhhh
Confidence            99998 577665321             11111222 33334445556665431     122333333333333444444


Q ss_pred             HhcCCCccccccccccccceeeCCCCCeeEEEecCC-CchHHHHHHHHHcCeeeecCCcccCCCCeEEEEee-c-ChhhH
Q 024997          169 SLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER-EEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLL-K-SQDDF  245 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~-~-~~~~~  245 (259)
                      +..+ +.  .+++          ..+...+.+.+++ .+.+.+...|+++|+.+.+|..-- ....+||+.. . +.+++
T Consensus       268 ~~~g-l~--~~~~----------~~s~~v~~~~~P~g~~~~~~~~~l~~~gi~i~~G~~~l-~~~~~RIg~mG~~~~~d~  333 (348)
T d1iuga_         268 EEGG-LR--PVPK----------RFSPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPL-KGKVFRLSLMGAYDRYEA  333 (348)
T ss_dssp             HHTT-CE--ESCS----------SBCTTCEEEECCTTCCHHHHHHHHHTTTEECEECCGGG-TTTEEEECCCSSCCHHHH
T ss_pred             hhhh-hc--cChh----------hcCCeEEEEECCCCCCHHHHHHHHHHCCeEEEcCcccc-CCCEEEEeCCCCCCHHHH
Confidence            4332 11  1111          1122245566654 356677778889999998875322 3468999964 3 88999


Q ss_pred             HHHHHHHHHHhhh
Q 024997          246 DLLLHRLDELISK  258 (259)
Q Consensus       246 ~~~~~~l~~~l~~  258 (259)
                      +.+++.|+++|++
T Consensus       334 ~~~~~~l~~~l~~  346 (348)
T d1iuga_         334 LGVAGMFREVLEE  346 (348)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998864

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=98.93  E-value=5e-10  Score=90.64  Aligned_cols=192  Identities=12%  Similarity=0.042  Sum_probs=107.1

Q ss_pred             CceEEEEcCCCCCChhhH-------HHhhcCCCcEEEeecccc----CCCCCCCC---CCCCCeEEEeccccccCCCcce
Q 024997           35 THLVEFVTAPNNPDGQMN-------KAVLKGPYAKSIYDHAYF----WPHFAPIP---APADEELMIFTISKLTGHAGSR  100 (259)
Q Consensus        35 ~~~~i~i~~p~NPtG~~~-------~~la~~~~~~vi~De~y~----~~~~~~~~---~~~~~~i~~~S~SK~~g~~G~R  100 (259)
                      .+.++++++++|+.+...       .+.|+++|.++++|++|.    ........   ......+...+.+|..  .+.+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  208 (340)
T d1svva_         131 IPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAG--GMFG  208 (340)
T ss_dssp             EEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTT--CSSC
T ss_pred             cceeeeecccccccccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCcccc--cccc
Confidence            455656666666665543       267888999999999982    11111111   1112244444555544  3444


Q ss_pred             EEEEEecCHHHHHHHHHhhhhh--cCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 024997          101 FGWAVIKDEAVYQRMSAYISLN--TMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQE  178 (259)
Q Consensus       101 ~G~i~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  178 (259)
                      .++.... ..............  .........+++...++       ........++...++..+...++..+      
T Consensus       209 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~g------  274 (340)
T d1svva_         209 EALIILN-DALKPNARHLIKQRGALMAKGWLLGIQFEVLMK-------DNLFFELGAHSNKMAAILKAGLEACG------  274 (340)
T ss_dssp             EEEEECS-GGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTS-------TTHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred             ccccccc-hhhhhhhhhhcccccCccchhhHHHHHHHHHhh-------hhHHHHHHHHHHHHHhhhHHHHhcCC------
Confidence            5666655 34444333322221  22222222222222222       23345556677788888888888765      


Q ss_pred             ccccccccceeeCCCCCeeEEEecCCCchHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHH
Q 024997          179 IAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDEL  255 (259)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~  255 (259)
                              +....|..+.+++++++   .+...+++++..+...+...  .+.+.+|+|++.  ++++++.+++.|+++
T Consensus       275 --------~~~~~p~~~~~v~~~~~---~~~~~~l~~~~~~~~~~~~~--~~~~~vR~s~~~~~t~edid~~l~~l~~l  340 (340)
T d1svva_         275 --------IRLAWPSASNQLFPILE---NTMIAELNNDFDMYTVEPLK--DGTCIMRLCTSWATEEKECHRFVEVLKRL  340 (340)
T ss_dssp             --------CCBSSCCSSSEECBEEE---HHHHHHHTTTEECEEEEEET--TTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred             --------CeeecCCCceEEEEeCC---HHHHHHHHHhhhhhcccccC--CCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence                    44445666777887774   45555555442222222111  246889998864  999999999999874

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.91  E-value=6.9e-08  Score=81.63  Aligned_cols=214  Identities=13%  Similarity=0.044  Sum_probs=143.0

Q ss_pred             cccChhhhcccCC-CCceEEEEcCCCCCChhhH---HHhhcCCCcEEEeecccc------CCCCCCCCCCCCCeEEEecc
Q 024997           21 FEGEANLWGNASS-DTHLVEFVTAPNNPDGQMN---KAVLKGPYAKSIYDHAYF------WPHFAPIPAPADEELMIFTI   90 (259)
Q Consensus        21 ~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~---~~la~~~~~~vi~De~y~------~~~~~~~~~~~~~~i~~~S~   90 (259)
                      ..+|.+++++.+. .++++|++..=.+|-=.-+   .++|.+.|++++.|-+++      +....+++   .-.++.+|+
T Consensus       165 ~~IDyd~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~---~aDvvt~tT  241 (470)
T d1rv3a_         165 GYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE---HCHVVTTTT  241 (470)
T ss_dssp             CSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG---TCSEEEEES
T ss_pred             CcccHHHHHHHHHhhCcceEeechhhccccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhh---eeeeeeeeh
Confidence            4688888888874 4899966655556655555   489999999999999984      11222332   237999999


Q ss_pred             ccccCCCcceEEEEEecCH--------------HHHHHHHHhhhhhcCCCCHHHHHHHHH-HHHHHHhcCCcchHHHHHH
Q 024997           91 SKLTGHAGSRFGWAVIKDE--------------AVYQRMSAYISLNTMGVSRECQLRAFK-LLKVVLEDGGNNIFEFGYN  155 (259)
Q Consensus        91 SK~~g~~G~R~G~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~q~~~~~-~l~~~~~~~~~~~~~~~~~  155 (259)
                      .|+|  .|=|-|.|.+...              ++.+++....-+...+.+...+.++.+ ++.+.    ....+.+..+
T Consensus       242 HKtl--rGPrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea----~~~~fk~Ya~  315 (470)
T d1rv3a_         242 HKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA----MTPEFKEYQR  315 (470)
T ss_dssp             SGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH----TSHHHHHHHH
T ss_pred             hhhc--cCCcceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHh----cChHHHHHHH
Confidence            9998  3555599887631              377777766555556655555554432 33322    2334677788


Q ss_pred             HHHHHHHHHHHHHHhcCCCccccccccccccceeeC-CCCCeeEEEecCCC--chHHHHHHHHHcCeeee----cCCccc
Q 024997          156 TMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIR-PPSPAYAWVKCERE--EDKDCYGILKAAKIIGR----EGKKFR  228 (259)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~~----~g~~f~  228 (259)
                      ++.++.+.|.+.|.+.+              +.... ....-.+++++...  +...+.+.|++.||.+.    |++.-.
T Consensus       316 qvv~NAk~La~~L~~~G--------------~~v~~ggTdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~D~~~  381 (470)
T d1rv3a_         316 QVVANCRALSAALVELG--------------YKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSA  381 (470)
T ss_dssp             HHHHHHHHHHHHHHHTT--------------CEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCT
T ss_pred             HHHHHHHHHHHHHHhCC--------------ceeccCCCCCceEEEeecccCCcHHHHHHHHHHcCcEECCCcCCCCCCC
Confidence            89999999999999866              22222 22233557777543  67889999999999763    554322


Q ss_pred             CCCCeEEEEe------ecChhhHHHHHHHHHHHhh
Q 024997          229 AEARFVRLSL------LKSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       229 ~~~~~~Ris~------~~~~~~~~~~~~~l~~~l~  257 (259)
                      ..+..+||+.      +..+++++++.+.|.++++
T Consensus       382 ~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~  416 (470)
T d1rv3a_         382 LRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE  416 (470)
T ss_dssp             TSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            2357899997      2267888888887777653

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.91  E-value=4.3e-08  Score=82.66  Aligned_cols=214  Identities=14%  Similarity=0.077  Sum_probs=143.1

Q ss_pred             cccChhhhcccCC-CCceEEEEcCCCCCChhhH---HHhhcCCCcEEEeecccc-----CC-CCCCCCCCCCCeEEEecc
Q 024997           21 FEGEANLWGNASS-DTHLVEFVTAPNNPDGQMN---KAVLKGPYAKSIYDHAYF-----WP-HFAPIPAPADEELMIFTI   90 (259)
Q Consensus        21 ~~~d~~~l~~~~~-~~~~~i~i~~p~NPtG~~~---~~la~~~~~~vi~De~y~-----~~-~~~~~~~~~~~~i~~~S~   90 (259)
                      ..+|.+++++.+. .++++|++..=.+|--.-+   .++|.+.|++++.|-+++     +. ...+++   .-.++.+|+
T Consensus       161 ~~IDyd~~~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~---~aDvvt~tT  237 (463)
T d2a7va1         161 GLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK---HADIVTTTT  237 (463)
T ss_dssp             CSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG---TCSEEEEES
T ss_pred             CcCcHHHHHHHHhhcCCceEEecccccccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhh---hhhhhhchh
Confidence            3588888988884 4899966666556666555   489999999999999994     21 122232   237899999


Q ss_pred             ccccCCCcceEEEEEecCH--------------HHHHHHHHhhhhhcCCCCHHHHHHHHH-HHHHHHhcCCcchHHHHHH
Q 024997           91 SKLTGHAGSRFGWAVIKDE--------------AVYQRMSAYISLNTMGVSRECQLRAFK-LLKVVLEDGGNNIFEFGYN  155 (259)
Q Consensus        91 SK~~g~~G~R~G~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~q~~~~~-~l~~~~~~~~~~~~~~~~~  155 (259)
                      .|+|  .|=|-|.|.+.+.              ++.+++....-+...+.+...+.++.+ ++.+.    ....+.+..+
T Consensus       238 HKTl--rGPrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea----~~~~fk~Ya~  311 (463)
T d2a7va1         238 HKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQA----CTPMFREYSL  311 (463)
T ss_dssp             SGGG--CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH----HSHHHHHHHH
T ss_pred             hhhh--cCCCceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHh----cCchHHHHHH
Confidence            9998  4556698888631              566777766555556655555554332 22321    2234667788


Q ss_pred             HHHHHHHHHHHHHHhcCCCccccccccccccceeeCC-CCCeeEEEecCCC--chHHHHHHHHHcCeee----ecCCccc
Q 024997          156 TMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRP-PSPAYAWVKCERE--EDKDCYGILKAAKIIG----REGKKFR  228 (259)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~ll~~~gi~~----~~g~~f~  228 (259)
                      ++.++.+.|.+.|.+.+              +..+.. ...-.+++++...  +...+...|++.||.+    .|++.-.
T Consensus       312 qVv~NAk~La~~L~~~G--------------~~vv~ggTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~~~  377 (463)
T d2a7va1         312 QVLKNARAMADALLERG--------------YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSA  377 (463)
T ss_dssp             HHHHHHHHHHHHHHHTT--------------CEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCS
T ss_pred             HHHHHHHHHHHHHHhCC--------------CeeecCCCCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCCCCC
Confidence            89999999999998876              222221 2222567787553  6788999999999976    3444222


Q ss_pred             CCCCeEEEEee------cChhhHHHHHHHHHHHhh
Q 024997          229 AEARFVRLSLL------KSQDDFDLLLHRLDELIS  257 (259)
Q Consensus       229 ~~~~~~Ris~~------~~~~~~~~~~~~l~~~l~  257 (259)
                      ..+..+||+..      ..+++++++.+.|.+++.
T Consensus       378 ~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~  412 (463)
T d2a7va1         378 ITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  412 (463)
T ss_dssp             SSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            23568999972      266888888777776653

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=98.87  E-value=2.8e-08  Score=82.45  Aligned_cols=212  Identities=11%  Similarity=0.002  Sum_probs=113.3

Q ss_pred             ccChhhhcccCCCCceEEEEcCCCCCChhhHH-----HhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEeccccccCC
Q 024997           22 EGEANLWGNASSDTHLVEFVTAPNNPDGQMNK-----AVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGH   96 (259)
Q Consensus        22 ~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~-----~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g~   96 (259)
                      .++++.+++.+...+.. .+   +|.||...+     ++|+++|+++++|.+...+ ..++ +..+-.+.+.|.+|.++.
T Consensus       127 ~~~~~~~~~~~~~~~~~-~v---~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g-~~~i-d~~~~di~~~s~~k~~~~  200 (361)
T d2c0ra1         127 YMTLPKLQEIQLQDNAA-YL---HLTSNETIEGAQFKAFPDTGSVPLIGDMSSDIL-SRPF-DLNQFGLVYAGAQKNLGP  200 (361)
T ss_dssp             TCSCCCGGGCCCCTTEE-EE---EEESEETTTTEECSSCCCCTTSCEEEECTTTTT-SSCC-CGGGCSEEEEETTTTTCC
T ss_pred             ccchhhhhhhcccCcce-EE---EEecccceecceEEEeeccCCceEEEEeecccc-cccc-ccccceeEEEeccccccc
Confidence            45556677666554433 22   466777763     8899999999999977211 1222 222335667788999987


Q ss_pred             CcceEEEEEecCHH-------------HHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 024997           97 AGSRFGWAVIKDEA-------------VYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWEN  163 (259)
Q Consensus        97 ~G~R~G~i~~~~~~-------------~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (259)
                      +|.-.+++. . +.             +..........  ...++.....+........   .........++.+..+..
T Consensus       201 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  273 (361)
T d2c0ra1         201 SGVTVVIVR-E-DLVAESPKHLPTMLRYDTYVKNNSLY--NTPPSFGIYMVNEVLKWIE---ERGGLEGVQQANRKKASL  273 (361)
T ss_dssp             SSCEEEEEE-G-GGSSSCCTTSCGGGCHHHHHHTTTCS--SCCCHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHH
T ss_pred             ccCcEEEEE-h-HHhhhCcccccccccccccccccccc--ccccceeeehhhhHHHhhh---hccchHHHHHHHHHHHHH
Confidence            773333332 2 12             11111111111  1122221122211111110   112233344455555555


Q ss_pred             HHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--
Q 024997          164 LSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--  240 (259)
Q Consensus       164 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--  240 (259)
                      +................         ....+...+.+.+++. +.+.+...|+++||.++.|...-   +.+|||+..  
T Consensus       274 ~~~~~~~~~~~~~~~~~---------~~~rS~~~~~~~~~~~~~~~~~~~~L~~~GI~~~~G~~~~---g~~RIs~~~~~  341 (361)
T d2c0ra1         274 IYDAIDQSGGFYRGCVD---------VDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSV---GGLRASIYNAV  341 (361)
T ss_dssp             HHHHHHTSTTSSEESSC---------GGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTT---CSEEEECCTTS
T ss_pred             hhhhhhhcccccccCCC---------hhhccceEEEEECCCcccHHHHHHHHHHCCCEEecCCCcC---CeEEEEecCCC
Confidence            55554443321111000         1112334456666543 45778888899999999985332   349999866  


Q ss_pred             ChhhHHHHHHHHHHHhhh
Q 024997          241 SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       241 ~~~~~~~~~~~l~~~l~~  258 (259)
                      +.++++++++.|+++.++
T Consensus       342 ~~edv~~Lv~~l~~~~~~  359 (361)
T d2c0ra1         342 PYESCEALVQFMEHFKRS  359 (361)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            899999999999987653

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=98.87  E-value=4.5e-08  Score=84.00  Aligned_cols=213  Identities=10%  Similarity=0.045  Sum_probs=115.0

Q ss_pred             cCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeecccc-----CCCC-CCCC-------CCCCCeEEEecccc
Q 024997           31 ASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYF-----WPHF-APIP-------APADEELMIFTISK   92 (259)
Q Consensus        31 ~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~-----~~~~-~~~~-------~~~~~~i~~~S~SK   92 (259)
                      ...+++..+++...+|-.|.+.     .++|+++|+++++|+++.     .+.. ....       ...+.++++.|++|
T Consensus       169 ~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK  248 (462)
T d1c4ka2         169 AKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHK  248 (462)
T ss_dssp             HTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHH
T ss_pred             hhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCc
Confidence            3345555556666667789876     388999999999999982     1110 0110       12234889999999


Q ss_pred             ccCCCcceEEEEE-ecCHHHH---------HHHHHhhhh-hcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 024997           93 LTGHAGSRFGWAV-IKDEAVY---------QRMSAYISL-NTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRW  161 (259)
Q Consensus        93 ~~g~~G~R~G~i~-~~~~~~~---------~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  161 (259)
                      ++|..+  .|.++ ..+ +.+         +.++..... .+.+++.........+....    ......+..++..++.
T Consensus       249 ~lg~~~--~g~ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~----~~~~g~~l~~~~~~~a  321 (462)
T d1c4ka2         249 QQAGFS--QTSQIHKKD-SHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQ----EGEAGRKLWHDLLITT  321 (462)
T ss_dssp             HSSCCT--TCEEEEEEC-GGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHH
T ss_pred             cccccc--ceEEEEecc-ccccccchhhhHHHHHHhhhhcccCCchHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHH
Confidence            998543  24444 342 221         223332222 23444444433333333321    1223455566777788


Q ss_pred             HHHHHHHHhcCCCcccccccc----------------ccccceeeCC----------CCCee------EEEecCCC----
Q 024997          162 ENLSKIISLSNRFSLQEIAPQ----------------YCTYFKKIRP----------PSPAY------AWVKCERE----  205 (259)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~~~----------------~~~~~~~~~~----------~~~~~------~~~~~~~~----  205 (259)
                      +.+++.++++.+.......+.                ...++. ..+          ....+      +.+..+..    
T Consensus       322 ~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~  400 (462)
T d1c4ka2         322 IEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWR-FEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPET  400 (462)
T ss_dssp             HHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGB-CCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTT
T ss_pred             HHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhc-cCCcchhccccccCccceecccceeEEecCCccccc
Confidence            888888887664321111000                000000 000          00000      22222211    


Q ss_pred             --------chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHh
Q 024997          206 --------EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       206 --------~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l  256 (259)
                              ....+.+.|+++||.+--     .+.+.+|++++.  ++++++.+++.|+++-
T Consensus       401 g~~~~~G~~~~~~~~~L~~~gI~~e~-----~~~~~i~~~~s~~~T~edid~li~aL~ei~  456 (462)
T d1c4ka2         401 GDYEDFGVPATIVANYLRDHGIIPEK-----SDLNSILFLMTPAETPAKMNNLITQLLQLQ  456 (462)
T ss_dssp             TEECSSCCCHHHHHHHHHHTTCCCSE-----ECSSEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred             cchhhcCCcHHHHHHHHHHcCCeeec-----cCCCeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence                    235666778889986532     245789999976  8999999999888764

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=98.85  E-value=6e-08  Score=82.57  Aligned_cols=181  Identities=17%  Similarity=0.079  Sum_probs=109.1

Q ss_pred             HhhcCCCcEEEeeccc--cCCCCCCCC----C-CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhh--hhhcC
Q 024997           54 AVLKGPYAKSIYDHAY--FWPHFAPIP----A-PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI--SLNTM  124 (259)
Q Consensus        54 ~la~~~~~~vi~De~y--~~~~~~~~~----~-~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~--~~~~~  124 (259)
                      ++|+++|+++|.||++  |+.....+.    + .+|    +-+++|.++ .|+-+|.+++. +++.+......  ...+.
T Consensus       229 ~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PD----i~~~gK~l~-gG~p~~av~~~-~~~~~~~~~~~~~~~~T~  302 (431)
T d1zoda1         229 RKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPD----ILTLSKTLG-AGLPLAAIVTS-AAIEERAHELGYLFYTTH  302 (431)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS----EEEECHHHH-TTSSCEEEEEC-HHHHHHHHHTTCCCCCTT
T ss_pred             HHHHhcCceEEeccccccccccccccccccCCCCcc----hhccccccc-cccccceeeee-ecchhhhhcccccccCCC
Confidence            8999999999999999  432222221    1 233    677899997 78889999988 68877765432  34567


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecC-
Q 024997          125 GVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCE-  203 (259)
Q Consensus       125 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  203 (259)
                      +.+++.-+++.+.++...+   ++.+++..+.-+...+.+.+.+++.+.             +..+...|.++ -+.+. 
T Consensus       303 ~g~pl~~aaa~a~l~~i~~---~~~~~~~~~~g~~l~~~l~~~~~~~~~-------------i~~vrG~Glm~-~ie~~~  365 (431)
T d1zoda1         303 VSDPLPAAVGLRVLDVVQR---DGLVARANVMGDRLRRGLLDLMERFDC-------------IGDVRGRGLLL-GVEIVK  365 (431)
T ss_dssp             TTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTT-------------EEEEEEETTEE-EEEEEE
T ss_pred             CCCcchHHHHHHHHHHhhh---hhhhHHHHHHHHHHhhhhhhhhhcCCC-------------eEEEeecceEE-EEEEec
Confidence            8888888888877775422   233333333333334444444444332             22233333332 22221 


Q ss_pred             --C---Cc---hHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHHHHHHHHHHhhh
Q 024997          204 --R---EE---DKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDLLLHRLDELISK  258 (259)
Q Consensus       204 --~---~~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~~~~~l~~~l~~  258 (259)
                        .   .+   ...+.+.+.++|+...... .....+.+|++..  .+++++++++++|.+.+++
T Consensus       366 ~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~-~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~  429 (431)
T d1zoda1         366 DRRTKEPADGLGAKITRECMNLGLSMNIVQ-LPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER  429 (431)
T ss_dssp             ETTTTEECTTHHHHHHHHHHHTTEECCEEC-CTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCccHHHHHHHHHHHHHhCcccCeee-ecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence              1   01   2334444556888653211 1223578999864  4899999999999999875

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=98.82  E-value=7.9e-08  Score=80.57  Aligned_cols=238  Identities=11%  Similarity=0.061  Sum_probs=137.2

Q ss_pred             CcccchhhhhhccCcc-------cccccChhhhcccCCCCceEEEEcCCCCCChhhH--HHhhcCCCcEEEeeccc-cCC
Q 024997            3 FYPLYQEQTDYFESVD-------YKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMN--KAVLKGPYAKSIYDHAY-FWP   72 (259)
Q Consensus         3 ~y~~~~~~~~~~g~~~-------~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~--~~la~~~~~~vi~De~y-~~~   72 (259)
                      +|+.....+...|..+       ..+.+|++.+++.+++++++|++++.......+-  .++|+++|+++|+|.++ ++.
T Consensus        83 t~~a~~~ai~~~g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk~i~~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga  162 (384)
T d1b9ha_          83 TFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIMPVHMAGLMADMDALAKISADTGVPLLQDAAHAHGA  162 (384)
T ss_dssp             SCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTC
T ss_pred             ccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccchhhhhhhhhhhhhhhceeccc
Confidence            3444455555566654       2357888999999999999987776643322222  48899999999999987 321


Q ss_pred             CC--CCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhhhhh-----------------cCCCCHHHHHH
Q 024997           73 HF--APIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLN-----------------TMGVSRECQLR  133 (259)
Q Consensus        73 ~~--~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~q~~  133 (259)
                      ..  .......+-.++-.+.+|.++. | .-|.++++++++.+.++.+....                 ....+.++.+.
T Consensus       163 ~~~g~~~g~~g~~~~~Sf~~~K~i~~-g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aai  240 (384)
T d1b9ha_         163 RWQGKRVGELDSIATFSFQNGKLMTA-G-EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASV  240 (384)
T ss_dssp             EETTEEGGGSSSCEEEECCTTSSSCS-S-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHH
T ss_pred             ccCCEecCcccccceecccccccccc-c-ccchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhh
Confidence            11  1111122333444455798752 2 24888888778888776654321                 12345554443


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCC-eeEEEecCCCc---hHH
Q 024997          134 AFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSP-AYAWVKCEREE---DKD  209 (259)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~  209 (259)
                      +..-|+         .+++..++-+++.+.+.+.|+++.++.....+.        ...... .+..+.++...   .+.
T Consensus       241 g~~qL~---------~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~Rd~  303 (384)
T d1b9ha_         241 LRAQLA---------RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDV--------RADRNSHYMAMFRIPGLTEERRNA  303 (384)
T ss_dssp             HHHHHT---------THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCT--------TCCBCCCSEEEEECTTCCHHHHHH
T ss_pred             hhhhhh---------hcccchhhhhhhhhhhhhhhhcccccccccccc--------cccccccccccceecccccccHHH
Confidence            444443         345556666777778888888776543221111        011112 22233344332   345


Q ss_pred             HHHHHHHcCeeeecCCc----------ccC------------------CCCeEEEEeec--C-hhhHHHHHHHHHHHhhh
Q 024997          210 CYGILKAAKIIGREGKK----------FRA------------------EARFVRLSLLK--S-QDDFDLLLHRLDELISK  258 (259)
Q Consensus       210 ~~~ll~~~gi~~~~g~~----------f~~------------------~~~~~Ris~~~--~-~~~~~~~~~~l~~~l~~  258 (259)
                      +.+.|+++||.+++...          ++.                  ..+.+.|-.-.  + +++++..++.|++++.+
T Consensus       304 l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~  383 (384)
T d1b9ha_         304 LVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR  383 (384)
T ss_dssp             HHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence            66777889998876421          110                  01234555432  4 46899999999999876


Q ss_pred             C
Q 024997          259 E  259 (259)
Q Consensus       259 ~  259 (259)
                      .
T Consensus       384 ~  384 (384)
T d1b9ha_         384 A  384 (384)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.79  E-value=1.3e-07  Score=81.44  Aligned_cols=227  Identities=11%  Similarity=-0.021  Sum_probs=134.3

Q ss_pred             hhhhhhccCcc------cccccChhhhcccCCC------CceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccc-
Q 024997            8 QEQTDYFESVD------YKFEGEANLWGNASSD------THLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAY-   69 (259)
Q Consensus         8 ~~~~~~~g~~~------~~~~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y-   69 (259)
                      .+.++..|...      ..+.+|+++|++.+.+      .+.+|+.+..++.||.+-     .++|+++|+|+.+|.+| 
T Consensus       196 ~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~G  275 (476)
T d1js3a_         196 ERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYA  275 (476)
T ss_dssp             HHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTG
T ss_pred             HHHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEecccc
Confidence            34445555443      3478999999998832      356777778899999996     48999999999999998 


Q ss_pred             -c---CCCCCC-CCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHH----h--------------hhh---hc
Q 024997           70 -F---WPHFAP-IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSA----Y--------------ISL---NT  123 (259)
Q Consensus        70 -~---~~~~~~-~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~----~--------------~~~---~~  123 (259)
                       +   .+.... +.+...-+-+..+++|.++.|. -.|.+...++........    +              ...   .+
T Consensus       276 g~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~-~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  354 (476)
T d1js3a_         276 GSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF-DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLG  354 (476)
T ss_dssp             GGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS-SCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSC
T ss_pred             hhhhhhcchhhhhcCCcccceeeecCccccccCC-cceeecccchHHHHHHHhcChhhhccccccccccccccccccccc
Confidence             2   122211 1223334677888999987543 467777775443321100    0              000   01


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecC
Q 024997          124 MGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCE  203 (259)
Q Consensus       124 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (259)
                      .....+..+.....+.       ..-+.+..++..+..+++.+.+++.+++             ....+..-.-+.++..
T Consensus       355 r~~~al~lw~~l~~~G-------~~g~~~~i~~~~~lA~~l~~~l~~~~~f-------------el~~~p~l~iV~Fr~~  414 (476)
T d1js3a_         355 RRFRSLKMWFVFRMYG-------VKGLQAYIRKHVQLSHEFEAFVLQDPRF-------------EVCAEVTLGLVCFRLK  414 (476)
T ss_dssp             CCCTHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHCTTE-------------EECSCCCSSEEEEEES
T ss_pred             hhhHHHHHHHHHHHHh-------HhHHHHHHHHHHHHHHHHHHHHhcCCCe-------------EEECCCceEEEEEEcc
Confidence            1111233333433333       2346667777788888899999887763             3333333333445554


Q ss_pred             CCc---hHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec---ChhhHHHHHHHHHHHhh
Q 024997          204 REE---DKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK---SQDDFDLLLHRLDELIS  257 (259)
Q Consensus       204 ~~~---~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~---~~~~~~~~~~~l~~~l~  257 (259)
                      ..+   .+...++.+...+.+.+..  -.+..++|++++.   ++++++.+++.|+++-+
T Consensus       415 ~~d~~n~~l~~~l~~~G~~~~s~t~--~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~  472 (476)
T d1js3a_         415 GSDGLNEALLERINSARKIHLVPCR--LRGQFVLRFAICSRKVESGHVRLAWEHIRGLAA  472 (476)
T ss_dssp             SCHHHHHHHHHHHHHHTSCBCEEEE--ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhcCCEEEeeee--ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            332   2344444433334444311  1234589999873   67889999999988754

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=1.2e-07  Score=78.12  Aligned_cols=214  Identities=14%  Similarity=-0.043  Sum_probs=120.2

Q ss_pred             cChhhhcccCCCCceEEEEcCCCCCChhhHH---HhhcCCCcEEEeeccccCCCCCCCC-CCCCCeEEEeccccccCCCc
Q 024997           23 GEANLWGNASSDTHLVEFVTAPNNPDGQMNK---AVLKGPYAKSIYDHAYFWPHFAPIP-APADEELMIFTISKLTGHAG   98 (259)
Q Consensus        23 ~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~---~la~~~~~~vi~De~y~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G   98 (259)
                      .+.+.+++.+.++++++.++..||-||...+   ..++.+++.+++|.+.   .....+ +..+-.+++.|.+|.++.++
T Consensus       126 ~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~~i~~~~~~~~v~vDa~~---~~~~~~vd~~~~dv~~~ss~k~~~~~~  202 (360)
T d1bjna_         126 LRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADVVVAADFSS---TILSRPIDVSRYGVIYAGAQKNIGPAG  202 (360)
T ss_dssp             EEEECCGGGCCCCSSCSCEEECSEETTTTEECCCCCCCCTTCCEEEECTT---TTTSSCCCGGGCSEEEEETTTTTSSTT
T ss_pred             cchhhhhhhhccCCceeEEEecccccccCccccceecccccceeeeeeec---cccceeeeeccceeEEEEcccccccCC
Confidence            3344556666777887788888999988873   4566788999999865   222222 33445788888999987554


Q ss_pred             ceEEEEEecCHHHHH------------HHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 024997           99 SRFGWAVIKDEAVYQ------------RMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSK  166 (259)
Q Consensus        99 ~R~G~i~~~~~~~~~------------~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (259)
                      - .|.++... ...+            .............++....+....+...    .........++.++.......
T Consensus       203 ~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  276 (360)
T d1bjna_         203 L-TIVIVRED-LLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLK----ANGGVAEMDKINQQKAELLYG  276 (360)
T ss_dssp             C-EEEEEEGG-GCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH----HTTHHHHHHHHHHHHHHHHHH
T ss_pred             C-ceeEeeeh-hhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHH
Confidence            3 34444331 2111            1111111111112222222222222211    122344445555555555555


Q ss_pred             HHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--Chh
Q 024997          167 IISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQD  243 (259)
Q Consensus       167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~  243 (259)
                      .+...........+          ...+...+.+.+++. +.+.+..+|+++||.++.|...-   +.+|+|+..  +++
T Consensus       277 ~~~~~~~~~~~~~~----------~~rs~~v~~f~~~~~~~~~~~~~~l~~~Gi~~~~G~~~~---g~~Ris~~~~~t~e  343 (360)
T d1bjna_         277 VIDNSDFYRNDVAK----------RNRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVV---GGMRASIYNAMPLE  343 (360)
T ss_dssp             HHHHCSSEECCBCG----------GGBCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTTT---CSEEEECCTTSCHH
T ss_pred             hhhccccccccCCc----------ccccceEEEEEcCCcccHHHHHHHHHHCCCEeecCCCcc---CeEEEEecCCCCHH
Confidence            55554432111111          112233455666543 55677788889999999874322   349999966  899


Q ss_pred             hHHHHHHHHHHHhhh
Q 024997          244 DFDLLLHRLDELISK  258 (259)
Q Consensus       244 ~~~~~~~~l~~~l~~  258 (259)
                      +++++++.|+++.++
T Consensus       344 dV~~li~~l~e~~~~  358 (360)
T d1bjna_         344 GVKALTDFMVEFERR  358 (360)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999997653

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.75  E-value=2.5e-08  Score=85.63  Aligned_cols=194  Identities=10%  Similarity=0.098  Sum_probs=110.8

Q ss_pred             CCceEEEEcCC-CCCChhhH---------HHhhcCCCcEEEeeccc--cCCCCCCCC----CCC-CCeEEEeccccccCC
Q 024997           34 DTHLVEFVTAP-NNPDGQMN---------KAVLKGPYAKSIYDHAY--FWPHFAPIP----APA-DEELMIFTISKLTGH   96 (259)
Q Consensus        34 ~~~~~i~i~~p-~NPtG~~~---------~~la~~~~~~vi~De~y--~~~~~~~~~----~~~-~~~i~~~S~SK~~g~   96 (259)
                      ++..+ ++..| +.-.|.+.         .++|+++|+++|.||++  |+.....+.    +.. ..+  +-+++|.++ 
T Consensus       247 ~~iAa-vivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PD--iv~~gK~l~-  322 (461)
T d1ohwa_         247 KTVAG-IIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPAD--VMTFSKKMM-  322 (461)
T ss_dssp             CCEEE-EEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCS--EEEECGGGS-
T ss_pred             Cccce-eeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCch--hhhhhhccc-
Confidence            34556 55555 44344433         38999999999999999  432221111    111 122  448899986 


Q ss_pred             CcceEEEEEecCHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 024997           97 AGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSL  176 (259)
Q Consensus        97 ~G~R~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  176 (259)
                      .    |+....  ++...........+++.+++.-+++.+.|+...+   ++.    .+..++.-+++.+.|+++..   
T Consensus       323 ~----g~~~~~--~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~---~~l----~~~~~~~g~~l~~~l~~l~~---  386 (461)
T d1ohwa_         323 T----GGFFHK--EEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKR---EDL----LSNAAHAGKVLLTGLLDLQA---  386 (461)
T ss_dssp             S----EEEEEC--GGGSCSSTTSSCCSCSSCHHHHHHHHHHHHHHHH---TTH----HHHHHHHHHHHHHHHHHHHH---
T ss_pred             c----cccccc--cccccccccccccccccccccchhhcccchhhhh---hhH----HHHHHHHHHHHHHHHHHHHh---
Confidence            3    444444  2222222233445678888888888888886532   222    33444444444455444321   


Q ss_pred             ccccccccccceeeCCCCCeeEEEecCCCc-hHHHHHHHHHcCeeeecCCcccCCCCeEEEEee--cChhhHHHHHHHHH
Q 024997          177 QEIAPQYCTYFKKIRPPSPAYAWVKCEREE-DKDCYGILKAAKIIGREGKKFRAEARFVRLSLL--KSQDDFDLLLHRLD  253 (259)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~--~~~~~~~~~~~~l~  253 (259)
                       ..+    .++..+... |++.-+++++.. .+.+...+.++|+.+.+.     +.+.+||...  .++++++.++++|.
T Consensus       387 -~~~----~~i~~vrG~-Gl~~~ie~~~~~~~~~i~~~~~~~Gll~~~~-----~~~~ir~~PpL~it~~eid~~~~~l~  455 (461)
T d1ohwa_         387 -RYP----QFISRVRGR-GTFCSFDTPDESIRNKLISIARNKGVMLGGC-----GDKSIRFRPTLVFRDHHAHLFLNIFS  455 (461)
T ss_dssp             -HCT----TTCEEEEEE-TTEEEEECSSHHHHHHHHHHHHHTTEECEEE-----TTTEEECCCCTTCCHHHHHHHHHHHH
T ss_pred             -hCC----CceEEeeee-eEEEEEEcCCHHHHHHHHHHHHHCCeEEeeC-----CCCEEEEeCCcCCCHHHHHHHHHHHH
Confidence             000    012223333 444456665542 234445555789998772     3478898853  38999999999999


Q ss_pred             HHhhh
Q 024997          254 ELISK  258 (259)
Q Consensus       254 ~~l~~  258 (259)
                      ++|++
T Consensus       456 ~~l~e  460 (461)
T d1ohwa_         456 DILAD  460 (461)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            99875

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=1.2e-07  Score=81.32  Aligned_cols=214  Identities=13%  Similarity=0.035  Sum_probs=119.0

Q ss_pred             cccChhhhcccCC----CCceEEEEcCCCCCChhhH---------HHhhcCCCcEEEeecccc----------CCCC--C
Q 024997           21 FEGEANLWGNASS----DTHLVEFVTAPNNPDGQMN---------KAVLKGPYAKSIYDHAYF----------WPHF--A   75 (259)
Q Consensus        21 ~~~d~~~l~~~~~----~~~~~i~i~~p~NPtG~~~---------~~la~~~~~~vi~De~y~----------~~~~--~   75 (259)
                      ..+|++.|++.+.    +.++++++.+.+|..|...         .++|+++|+++++|+++.          ...+  .
T Consensus       165 ~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~  244 (467)
T d2v1pa1         165 GNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW  244 (467)
T ss_dssp             TCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTS
T ss_pred             cCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCC
Confidence            3678888988872    3467777778787666432         389999999999999972          0011  1


Q ss_pred             CCC----C-CCCCeEEEeccccccCCCcceEEEEEecCHHHHHHHHHhh---h-----hhcCCCCHHHHHHHHHHHHHHH
Q 024997           76 PIP----A-PADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYI---S-----LNTMGVSRECQLRAFKLLKVVL  142 (259)
Q Consensus        76 ~~~----~-~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~~~~~~---~-----~~~~~~~~~~q~~~~~~l~~~~  142 (259)
                      ++.    . .....++..|.+|.++.+  +.|+++..+..+........   .     ....+.......+....+... 
T Consensus       245 ~~~~i~~~~~~~~d~~s~s~~K~~~~~--~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-  321 (467)
T d2v1pa1         245 TIEQITRETYKYADMLAMSAKKDAMVP--MGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDG-  321 (467)
T ss_dssp             CHHHHHHHHGGGCSEEEEESSSTTCCS--SCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHT-
T ss_pred             cccccchhhcccCCEEEecCCCCCCCC--CceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHh-
Confidence            110    0 123466777888887643  35777777533333222211   1     111233333333333333321 


Q ss_pred             hcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEe----cCCC------chHHHHH
Q 024997          143 EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVK----CERE------EDKDCYG  212 (259)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~~~  212 (259)
                            ...+..++..++.+.+.+.|++.+..              ..++ .+....++    +...      .......
T Consensus       322 ------~~~~~~~~~~~~~~~l~~~L~~~~~~--------------v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (467)
T d2v1pa1         322 ------MNLDWLAYRIAQVQYLVDGLEEIGVV--------------CQQA-GGHAAFVDAGKLLPHIPADQFPAQALACE  380 (467)
T ss_dssp             ------TCHHHHHHHHHHHHHHHHHHHHTTCC--------------EEEE-CSSCEEEEHHHHSTTSCGGGCHHHHHHHH
T ss_pred             ------hhHHHHHHHHHHHHHHHHHHHhcCCc--------------ccCC-CccceeecchhhcCCcchhhhhhHHHHHH
Confidence                  11234555567778888888875420              1111 11111111    1111      2355677


Q ss_pred             HHHHcCeeeecCCc------------ccCCCCeEEEEeec---ChhhHHHHHHHHHHHhhh
Q 024997          213 ILKAAKIIGREGKK------------FRAEARFVRLSLLK---SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       213 ll~~~gi~~~~g~~------------f~~~~~~~Ris~~~---~~~~~~~~~~~l~~~l~~  258 (259)
                      ++.+.||.......            .......+|+++..   +.++++++++.|++++++
T Consensus       381 ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~  441 (467)
T d2v1pa1         381 LYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_dssp             HHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence            77888986532211            01135679999753   889999999999998763

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=98.64  E-value=5.2e-06  Score=68.77  Aligned_cols=230  Identities=10%  Similarity=-0.018  Sum_probs=127.2

Q ss_pred             hhhhhhccCcccc------cccChhhhcccCCCCceEEEEcCCC-CCChhh-HHHhhcCCCcEEEeeccc-cCCCC--CC
Q 024997            8 QEQTDYFESVDYK------FEGEANLWGNASSDTHLVEFVTAPN-NPDGQM-NKAVLKGPYAKSIYDHAY-FWPHF--AP   76 (259)
Q Consensus         8 ~~~~~~~g~~~~~------~~~d~~~l~~~~~~~~~~i~i~~p~-NPtG~~-~~~la~~~~~~vi~De~y-~~~~~--~~   76 (259)
                      ...+...|.++.-      ...+++.+++.+++++++++.++.. +|.-.- +.++|+++|+++|+|.++ ++...  ..
T Consensus        87 ~~ai~~~G~~pv~vDi~~~~~~~~~~~~~~~~~~t~avi~vh~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~  166 (371)
T d2fnua1          87 ANMLLESGYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKK  166 (371)
T ss_dssp             HHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEE
T ss_pred             ceeeeccCcccccccccccccccchhhhhhccchhhccccccccccccccccccccccccchhhccchhhccCceecccc
Confidence            3344445666521      2344566788888999998877642 322221 258999999999999987 32111  11


Q ss_pred             CCCCCCCeEEEecc--ccccCCCcceEEEEEecCHHHHHHHHHhhhh----------------hcCCCCHHHHHHHHHHH
Q 024997           77 IPAPADEELMIFTI--SKLTGHAGSRFGWAVIKDEAVYQRMSAYISL----------------NTMGVSRECQLRAFKLL  138 (259)
Q Consensus        77 ~~~~~~~~i~~~S~--SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~----------------~~~~~~~~~q~~~~~~l  138 (259)
                      .....  .+.+.||  +|.++..+  -|.++++++++.+.++.....                .....+.+..+.+..-|
T Consensus       167 ~G~~g--~~~~~Sf~~~K~l~~g~--GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL  242 (371)
T d2fnua1         167 VGGFA--LASVFSFHAIKPITTAE--GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQL  242 (371)
T ss_dssp             TTSSS--SEEEEECCTTSSSCCSS--CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHH
T ss_pred             CCccc--ccccccccccccccccc--ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhh
Confidence            11122  4445555  78885332  589998888998888775432                12334555444444444


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCCC---chHHHHHHHH
Q 024997          139 KVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCERE---EDKDCYGILK  215 (259)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~  215 (259)
                      +         .+++..++-+++.....+.|++.+.+.+..-..        ..........+-+...   ..+.+.+.|+
T Consensus       243 ~---------~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~--------~~~~~~~~~~i~~~~~~~~~r~~~~~~L~  305 (371)
T d2fnua1         243 K---------KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLL--------KDKSSNHLYPILMHQKFFTCKKLILESLH  305 (371)
T ss_dssp             T---------THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGC--------SSCCCCSCEEEEECGGGGGGHHHHHHHHH
T ss_pred             h---------hccchhhhhhhhhhhhccccccccccccccccc--------ccccccccccccccccchhHHHHHHHHHH
Confidence            4         334444445555566666677655432211000        0011111112222221   2356667778


Q ss_pred             HcCeeeecCCc-------c----cCC---------CCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          216 AAKIIGREGKK-------F----RAE---------ARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       216 ~~gi~~~~g~~-------f----~~~---------~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      ++||.+++...       |    ..+         ...+.|-+..  +.++++..++.+.+++++
T Consensus       306 ~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~  370 (371)
T d2fnua1         306 KRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFES  370 (371)
T ss_dssp             HTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            89999876432       0    001         1234443323  889999999999998864

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=98.35  E-value=6.7e-06  Score=67.41  Aligned_cols=194  Identities=13%  Similarity=-0.023  Sum_probs=99.6

Q ss_pred             CCCChhhHH-----HhhcCCCcEEEeeccccCCCCCCCCCCCCCeEEEeccccccCCCcceEEEEEecCHHHHHH-----
Q 024997           45 NNPDGQMNK-----AVLKGPYAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQR-----  114 (259)
Q Consensus        45 ~NPtG~~~~-----~la~~~~~~vi~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~~-----  114 (259)
                      +|-||.+.+     ++|+++|+++|+|.+...++ .++ +..+-.+.+.+++|..+++|- .|+++.. +...+.     
T Consensus       146 ~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~-~~i-d~~~~~vd~~~~~~~k~~~~~-~~~~~~~-~~~~~~~~~~~  221 (360)
T d1w23a_         146 HITSNNTIYGTQYQNFPEINHAPLIADMSSDILS-RPL-KVNQFGMIYAGAQKNLGPSGV-TVVIVKK-DLLNTKVEQVP  221 (360)
T ss_dssp             EEESEETTTTEECSSCCCCCSSCEEEECTTTTTS-SCC-CGGGCSEEEEETTTTTSCTTC-EEEEEEH-HHHCSCCTTCC
T ss_pred             EecCCccccceeeeeccccceeeEEeeccccccc-ccc-ccccccceEEeeccccccCCc-ceeeEec-hhhhcccccCC
Confidence            456677763     89999999999999772111 122 112224555666777654442 3444444 222111     


Q ss_pred             -------HHHhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q 024997          115 -------MSAYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYF  187 (259)
Q Consensus       115 -------~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  187 (259)
                             ...... ....+...........+....+   ........++.+....................         
T Consensus       222 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  288 (360)
T d1w23a_         222 TMLQYATHIKSDS-LYNTPPTFSIYMLRNVLDWIKD---LGGAEAIAKQNEEKAKIIYDTIDESNGFYVGH---------  288 (360)
T ss_dssp             GGGCHHHHHHTTT-CSSCCCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHTTTTSSEES---------
T ss_pred             cchhhhhhhhhhh-hcccccceeeechhHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHHhhcccccccC---------
Confidence                   111111 1122233322222222222111   11222233333333333333333322211110         


Q ss_pred             eeeCCCCCeeEEEecCCC-chHHHHHHHHHcCeeeecCCcccCCCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          188 KKIRPPSPAYAWVKCERE-EDKDCYGILKAAKIIGREGKKFRAEARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gi~~~~g~~f~~~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      ......+...+.+++++. ..+.+...|.++||.++.|....   +.+|+|+-.  +.++++++++.++++.++
T Consensus       289 ~~~~~rS~~vvsf~i~~~~~~~~~~~~l~~~GI~~~~G~~~~---ggiRiS~~~~~t~e~V~~Li~~~~~~~~~  359 (360)
T d1w23a_         289 AEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHRSV---GGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             SCGGGBCSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCTTT---CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CChhhcceeEEEEEcCCCccHHHHHHHHHHCCCeeeeCCCcc---CcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence            001122333566677653 34566677889999999886543   349999855  899999999999998875

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.26  E-value=3.2e-05  Score=63.84  Aligned_cols=233  Identities=12%  Similarity=0.035  Sum_probs=125.0

Q ss_pred             cccchhhhhhccCcccccccC-------hh--hhcccCCCCceEEEEcCCC-CCChhh-HHHhhcCCCcEEEeeccc-cC
Q 024997            4 YPLYQEQTDYFESVDYKFEGE-------AN--LWGNASSDTHLVEFVTAPN-NPDGQM-NKAVLKGPYAKSIYDHAY-FW   71 (259)
Q Consensus         4 y~~~~~~~~~~g~~~~~~~~d-------~~--~l~~~~~~~~~~i~i~~p~-NPtG~~-~~~la~~~~~~vi~De~y-~~   71 (259)
                      |+.-...+...|..++-..+|       .+  .+....+++++++++++.. +|.... +.++|+++|++||+|.++ |+
T Consensus        71 ~~a~~~~~~~~g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~~~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g  150 (374)
T d1o69a_          71 FIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIEDAAEALG  150 (374)
T ss_dssp             CGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTT
T ss_pred             hHhhHHHHhhccceeEecccccccccccccccccchhcccccccccccccccchhhhHHHHHHhhccCcchhhhhhhhhc
Confidence            344445555567665322222       22  2334456788888888774 554433 359999999999999987 32


Q ss_pred             CCC--CCCCCCCCCeEEEecc--ccccCCCcceEEEEEecCHHHHHHHHHhhhh--------------hcCCCCHHHHHH
Q 024997           72 PHF--APIPAPADEELMIFTI--SKLTGHAGSRFGWAVIKDEAVYQRMSAYISL--------------NTMGVSRECQLR  133 (259)
Q Consensus        72 ~~~--~~~~~~~~~~i~~~S~--SK~~g~~G~R~G~i~~~~~~~~~~~~~~~~~--------------~~~~~~~~~q~~  133 (259)
                      ..+  ..+...  ..+.+.||  +|.++..|  -|.++..++++.+.++.+...              .....+.+..+.
T Consensus       151 ~~~~~~~~G~~--gd~~~fSf~~~K~l~tge--GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aai  226 (374)
T d1o69a_         151 SFYKNKALGTF--GEFGVYSYNGNKIITTSG--GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAI  226 (374)
T ss_dssp             CEETTEETTSS--SSEEEEECCTTSSSCCSS--CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHH
T ss_pred             ceECCeecCCC--CceEEEeccCcccccccc--ceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhh
Confidence            111  111111  25556666  48886433  488888888998888765421              123355555555


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCeeEEEecCC---------
Q 024997          134 AFKLLKVVLEDGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAYAWVKCER---------  204 (259)
Q Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  204 (259)
                      +..-++         .+.+..++-++.++...+.|++...+... ....       .....-.++.+....         
T Consensus       227 g~~qL~---------~l~~~i~~r~~i~~~y~~~L~~~~~~~~~-~~~~-------~s~~~~~~~~~~~~~~~~~~~~~~  289 (374)
T d1o69a_         227 GVAQME---------VLEQRVLKKREIYEWYKEFLGEYFSFLDE-LENS-------RSNRWLSTALINFDKNELNACQKD  289 (374)
T ss_dssp             HHHHHT---------THHHHHHHHHHHHHHHHHHHTTTEECCCC-CTTE-------ECCCSSEEEEESCCGGGSCCCCEE
T ss_pred             hHHHHh---------hhhhhcchhHHHHHHHHhhcccccccccc-ccCC-------CCChhheeeeeccccccccccccc
Confidence            544444         23333444445555666666654321111 0000       000011112211110         


Q ss_pred             -----------CchHHHHHHHHHcCeeeecCCccc------CC-------------CCeEEEEeec--ChhhHHHHHHHH
Q 024997          205 -----------EEDKDCYGILKAAKIIGREGKKFR------AE-------------ARFVRLSLLK--SQDDFDLLLHRL  252 (259)
Q Consensus       205 -----------~~~~~~~~ll~~~gi~~~~g~~f~------~~-------------~~~~Ris~~~--~~~~~~~~~~~l  252 (259)
                                 ...+.+.+.|+++||.+++....-      ..             ...+.|=+..  +.+++++.++.|
T Consensus       290 ~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I  369 (374)
T d1o69a_         290 INISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLI  369 (374)
T ss_dssp             EECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHH
T ss_pred             cccchhhccchhhHHHHHHHHHHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHH
Confidence                       024556777888999988743100      00             1123333322  889999999999


Q ss_pred             HHHhh
Q 024997          253 DELIS  257 (259)
Q Consensus       253 ~~~l~  257 (259)
                      .++++
T Consensus       370 ~~~lk  374 (374)
T d1o69a_         370 LKSIK  374 (374)
T ss_dssp             HHHHC
T ss_pred             HHHHC
Confidence            99874

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=97.91  E-value=0.00013  Score=61.15  Aligned_cols=200  Identities=12%  Similarity=0.084  Sum_probs=107.1

Q ss_pred             CCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCC--CCCCCCeEEEeccccccC------CCc
Q 024997           32 SSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPI--PAPADEELMIFTISKLTG------HAG   98 (259)
Q Consensus        32 ~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~--~~~~~~~i~~~S~SK~~g------~~G   98 (259)
                      +.+++.++++.+||. .|.+-     .+++++.|.+++.|-.-.  ....+  ++..+-+|++++ +|.||      .||
T Consensus       193 ~~~~~Aavmi~~Pnt-~G~~ed~~~i~~~~h~~G~l~~~~ad~~--al~~l~~Pg~~GaDi~~g~-~q~fg~p~g~GGP~  268 (437)
T d1wyua1         193 VGEEVGAVVVQNPNF-LGALEDLGPFAEAAHGAGALFVAVADPL--SLGVLKPPGAYGADIAVGD-GQSLGLPMGFGGPH  268 (437)
T ss_dssp             CCTTEEEEEEESSCT-TSBCCCHHHHHHHHHHTTCEEEEECCTT--GGGTBCCHHHHTCSEEEEE-CTTTTCCCGGGCSC
T ss_pred             hccceeEEEEccccc-cccccchHHHHHHhhhccceEEeeechh--hhhccccccccccceEeec-cceeccccCCCcCc
Confidence            467899999999964 45543     478899999877764111  11111  122244666666 55543      244


Q ss_pred             ceEEEEEecCHHHHHHHH----------------------------HhhhhhcCCCCHHHHHHHHHHHHHHHhcCCcchH
Q 024997           99 SRFGWAVIKDEAVYQRMS----------------------------AYISLNTMGVSRECQLRAFKLLKVVLEDGGNNIF  150 (259)
Q Consensus        99 ~R~G~i~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~  150 (259)
                        .|++.+. +++...+-                            +.+.....|.+....+..+.++-..+   +.+=+
T Consensus       269 --~G~~a~~-~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~l---G~~GL  342 (437)
T d1wyua1         269 --FGFLATK-KAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAAL---GPEGL  342 (437)
T ss_dssp             --CEEEEEC-GGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHH---HHHHH
T ss_pred             --ccccccc-chhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhc---CcccH
Confidence              6788877 46554431                            11111223333322222222221110   22234


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCee-EEEecCCCchHHHHHHHHHcCeeeecCCccc-
Q 024997          151 EFGYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPAY-AWVKCEREEDKDCYGILKAAKIIGREGKKFR-  228 (259)
Q Consensus       151 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~gi~~~~g~~f~-  228 (259)
                      .+.-+....+..++.+.|.+++++.             ...+..-+. +.++++.. .+.+.+.|.++|+...- ..|. 
T Consensus       343 ~~ia~~a~~~A~yl~~~L~~~~g~~-------------~~~~~~~f~ef~v~~~~~-~~~i~k~L~d~G~~~~~-~~~~~  407 (437)
T d1wyua1         343 REVALKSVEMAHKLHALLLEVPGVR-------------PFTPKPFFNEFALALPKD-PEAVRRALAERGFHGAT-PVPRE  407 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTCE-------------ECSCSSBCSEEEEECSSC-HHHHHHHHHHTTCCCCE-ECCTT
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCCee-------------ccCCCCeeeEEEEECCCC-HHHHHHHHHhCCCCCCc-ccccC
Confidence            5555666677777777787665432             112222222 23444443 44444445568885311 1121 


Q ss_pred             CCCCeEEEEeec--ChhhHHHHHHHHHHHh
Q 024997          229 AEARFVRLSLLK--SQDDFDLLLHRLDELI  256 (259)
Q Consensus       229 ~~~~~~Ris~~~--~~~~~~~~~~~l~~~l  256 (259)
                      .+.+.+.++++-  ++++++..++.|++++
T Consensus       408 ~~~~~lli~~TE~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         408 YGENLALFAATELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             SCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             CCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence            135789999964  8899999999999875

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=97.02  E-value=0.0027  Score=53.55  Aligned_cols=215  Identities=10%  Similarity=0.012  Sum_probs=114.6

Q ss_pred             ccChhhhcccCCCCceEEEEcCCCCCChhhH-----HHhhcCCCcEEEeeccccCCCCCCCC--CCCCCeEEEecccccc
Q 024997           22 EGEANLWGNASSDTHLVEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIP--APADEELMIFTISKLT   94 (259)
Q Consensus        22 ~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~-----~~la~~~~~~vi~De~y~~~~~~~~~--~~~~~~i~~~S~SK~~   94 (259)
                      ..|.+.++....+++..+++.+|+++-+..-     .+++++.+..+++|.+-. +....+.  ....-.+++....+.|
T Consensus       189 ~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~-~~~~~l~~p~~~g~div~vg~~q~~  267 (471)
T d1wyub1         189 EVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANL-NAIMGWARPGDMGFDVVHLNLHKTF  267 (471)
T ss_dssp             SBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGG-GGTTTTCCHHHHTCSEEECCTTTTT
T ss_pred             cccchhhhhhhhccccceeeccCCCcccccchhhhhHHHHHhccccccccccch-hhhhhccccCccccccccccccccc
Confidence            4555666666677888889999987655432     477888888777775431 1111111  1112234434444444


Q ss_pred             CC----CcceEEEEEecCHHHHHHHHHh----------------h--hhhcCCCCHHHHHHHHHHHHHHHhcCCcchHHH
Q 024997           95 GH----AGSRFGWAVIKDEAVYQRMSAY----------------I--SLNTMGVSRECQLRAFKLLKVVLEDGGNNIFEF  152 (259)
Q Consensus        95 g~----~G~R~G~i~~~~~~~~~~~~~~----------------~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  152 (259)
                      |.    .|--+|++.+. +++..++-..                +  +-...|.+...-+.++.+.-.++   +.+=+.+
T Consensus       268 G~P~~~GGP~~G~~a~~-~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsll---G~~GL~e  343 (471)
T d1wyub1         268 TVPHGGGGPGSGPVGVK-AHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTL---GLEGLKK  343 (471)
T ss_dssp             CCCCTTSCCCCCCEEEC-GGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHH---HHHHHHH
T ss_pred             ccccccccccccceeeh-hhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHh---CchhHHH
Confidence            32    23337888888 4766554210                0  00112333322222222222221   2233555


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCccccccccccccceeeCCCCCe--eEEEecCCC-ch-HHHHHHHHHcCeeeecCCccc
Q 024997          153 GYNTMKKRWENLSKIISLSNRFSLQEIAPQYCTYFKKIRPPSPA--YAWVKCERE-ED-KDCYGILKAAKIIGREGKKFR  228 (259)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~-~~~~~ll~~~gi~~~~g~~f~  228 (259)
                      .-+..-.+..++.+.|+. .++.+.             . .+.+  -..++++.. +. +..+.++ ++|+.. +...|+
T Consensus       344 lA~~~~~~A~Yla~~L~~-~G~~~~-------------~-~~~ff~EFvv~~~~~~~~~~i~k~L~-~~G~~~-~~~~~p  406 (471)
T d1wyub1         344 AAALAVLNARYLKELLKE-KGYRVP-------------Y-DGPSMHEFVAQPPEGFRALDLAKGLL-ELGFHP-PTVYFP  406 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TTCBCS-------------S-CSSCCSCEEEBCSTTCCHHHHHHHHH-HTTCCC-CEESCS
T ss_pred             HHHHHHHHHHHHHHHHhh-cCceec-------------c-CcceeeEEeecCCCCCCHHHHHHHHH-HcCCCC-CcccCc
Confidence            666667777778888865 332221             1 1111  112344432 33 4455555 578853 333444


Q ss_pred             C-CCCeEEEEeec--ChhhHHHHHHHHHHHhhh
Q 024997          229 A-EARFVRLSLLK--SQDDFDLLLHRLDELISK  258 (259)
Q Consensus       229 ~-~~~~~Ris~~~--~~~~~~~~~~~l~~~l~~  258 (259)
                      . .++.+-++++-  ++++|+..++.|++++++
T Consensus       407 ~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e  439 (471)
T d1wyub1         407 LIVKEALMVEPTETEAKETLEAFAEAMGALLKK  439 (471)
T ss_dssp             TTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred             CCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            3 46788899854  899999999999998874